Citrus Sinensis ID: 017967

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRWR
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHcccccccccccccEEEccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccHHHHcccEEEEEccccHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHcccccccccccccccccccHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEcccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccHcHHccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccEEccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccHHHHcccEEEEEEEHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHcccEEEEEEcEEccccEEcHHHHHHHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccHHHHcHHHHHHHHcccccEEEEEcccccccHHHcEEEEEEEcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHcc
Coil and Loop (DISEMBL)
MASTMLSIasatpsaslsmHEKLKGKvklgsttnstagfiktksfGRVSMVAAVNvsrfegvtmappdpilgvseafkadtdekklnlgvgayrteelqPYVLDVVKKAENLMlergenkeylpieGLAAFNKVTAELLfgadnsvlKEQRVATVQGLSGTGSLRLAAALIERYFPgakvlissptwgnhknifndarvpwseyryydpktvgldfEGMIADikaapggsfillhgcahnptgidptpeQWEKIADVIQEknhipffdvayqgfasgsldndassVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLarpmysnpppmlLGIQLssmngkqrwr
Flexible Loop (DISEMBL)
mastmlsiasatpsaslsMHEKLKGKvklgsttnstagfiktksfgrVSMVAAVNVSrfegvtmappdpILGVSEAFKADTDEKKLnlgvgayrteelqpyvLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATvqglsgtgSLRLAAALIERYFPGAKVLissptwgnhknifndarvpwsEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLArpmysnpppmllgiqlssmngkqrwr
Low Complexity Region (SEG)
MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRWR
Disordered region (IsUnstruct)
************************************AGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA************************************
Disordered Region (DISOPRED)
********************************************************SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRWR
Disordered Region (DISEMBL)
*******************HEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLS*********
Disordered Region (DISPRO)
*********************************************GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRWR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
P46248	453	Aspartate aminotransferas	yes	no	0.933	0.748	0.831	1e-167
P26563	454	Aspartate aminotransferas	N/A	no	0.898	0.718	0.828	1e-160
P37833	407	Aspartate aminotransferas	no	no	0.796	0.710	0.572	8e-99
P28734	405	Aspartate aminotransferas	N/A	no	0.796	0.713	0.582	8e-99
P28011	418	Aspartate aminotransferas	N/A	no	0.796	0.691	0.572	3e-97
P46645	405	Aspartate aminotransferas	no	no	0.796	0.713	0.558	1e-95
P46644	449	Aspartate aminotransferas	no	no	0.796	0.643	0.555	1e-94
P12344	430	Aspartate aminotransferas	yes	no	0.782	0.660	0.568	3e-94
P05202	430	Aspartate aminotransferas	yes	no	0.782	0.660	0.564	8e-94
P00505	430	Aspartate aminotransferas	yes	no	0.782	0.660	0.564	8e-94

>sp|P46248|AAT5_ARATH Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2

 Score =  588 bits (1515), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/345 (83%), Positives = 308/345 (89%), Gaps = 6/345 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
           MAS MLS+ S     SL   E  K K+KLG  T+++  F+K KSF RV+M  AV  SRFE
Sbjct: 1   MASLMLSLGST----SLLPREINKDKLKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFE 54

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct: 55  GITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
           EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct: 115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct: 175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct: 235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           SYSKNLGLYAERIGA+NVVCSS+D A RVKSQLKR+ARPMYSNPP
Sbjct: 295 SYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPP 339

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1

>sp|P26563|AATM_LUPAN Aspartate aminotransferase P2, mitochondrial (Fragment) OS=Lupinus angustifolius PE=2 SV=1

 Score =  564 bits (1453), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/327 (82%), Positives = 292/327 (89%), Gaps = 1/327 (0%)

Query: 20  HEKLK-GKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFK 78
           ++KLK G   L  +   +  F   KS  R+SMVAAVNVSRFEG+ MAPPDPILGVSEAF+
Sbjct: 14  NDKLKVGGNSLRFSKEQSNTFSNAKSSCRISMVAAVNVSRFEGIPMAPPDPILGVSEAFR 73

Query: 79  ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL 138
           ADT + KLNLGVGAYRTEELQPYVL VV KAENLMLERG+NKEYL IEGLAAFNK TAEL
Sbjct: 74  ADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLMLERGQNKEYLAIEGLAAFNKATAEL 133

Query: 139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR 198
           L GADN  +K+QRVATVQGLSGTGSLRL AALIERYFPGAKVLIS+PTWGNHKNIFNDAR
Sbjct: 134 LLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFPGAKVLISAPTWGNHKNIFNDAR 193

Query: 199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI 258
           VPWSEYRYYDPKTVGLDFEGMI DIKAAP G+F+LLHGCAHNPTGIDPTPEQWEKIADVI
Sbjct: 194 VPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLHGCAHNPTGIDPTPEQWEKIADVI 253

Query: 259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV 318
           QEKNHIPFFDVAYQGFASGSLD DA+SVRLF  RG+E+LVAQSYSKNLGLYAERIGA+NV
Sbjct: 254 QEKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGLEVLVAQSYSKNLGLYAERIGAINV 313

Query: 319 VCSSSDLAARVKSQLKRLARPMYSNPP 345
           + SS + AARVKSQLKR+ARPMYSNPP
Sbjct: 314 ISSSPESAARVKSQLKRIARPMYSNPP 340

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Lupinus angustifolius (taxid: 3871)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P37833|AATC_ORYSJ Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1

 Score =  360 bits (925), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 166/290 (57%), Positives = 217/290 (74%), Gaps = 1/290 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F G+  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VL+VV++AE +++  
Sbjct: 5   SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 64

Query: 117 GEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct: 65  PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 124

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + I  PTWGNH  +F  A +    YRYYDP T GLDF+G++ D+ +AP G+ +LLH
Sbjct: 125 HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLH 184

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct: 185 ACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGE 244

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           LL+AQSY+KN+GLY ER+GA+++VC S+D+A RV+SQLK + RPMYSNPP
Sbjct: 245 LLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPP 294

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P28734|AATC_DAUCA Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1

 Score =  360 bits (925), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 169/290 (58%), Positives = 219/290 (75%), Gaps = 1/290 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           S F  V  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VVKKAE +++ +
Sbjct: 3   SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           +   KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct: 63  QSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               V I  PTWGNH  IF  A +    YRYY+P+T GLDFEGM+ D+ +AP G+ +LLH
Sbjct: 123 HEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct: 183 ACAHNPTGVDPTIEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDADAQSVRIFVADGGE 242

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            L AQSY+KN+GLY ER+GA+++VC ++D+A++V+SQLK + RPMYS+PP
Sbjct: 243 CLAAQSYAKNMGLYGERVGALSIVCKTADVASKVESQLKLVIRPMYSSPP 292

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P28011|AAT1_MEDSA Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2

 Score =  355 bits (911), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 166/290 (57%), Positives = 217/290 (74%), Gaps = 1/290 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           S F  +  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VLDVV++ E  +L +
Sbjct: 16  SVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPLVLDVVRRVERQLLND 75

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              NKEY+PI GLA FNK++A+L+FGAD+  ++E RV TVQGLSGTGSLR+    + +++
Sbjct: 76  MSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQGLSGTGSLRVGGEFLAKHY 135

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + + +PTWGNH  +FN A +    YRYY P T GLDF+G++ D+ +AP GS +LLH
Sbjct: 136 HQRIIYLPTPTWGNHTKVFNLAGLTVKTYRYYAPATRGLDFQGLLEDLGSAPSGSVVLLH 195

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQWE+I  +I+ K+ +PFFD AYQGFASGSLD DA  VRLF   G E
Sbjct: 196 ACAHNPTGVDPTLEQWEQIRQLIRSKSLLPFFDSAYQGFASGSLDADAQPVRLFVADGGE 255

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           LLVAQSY+KN+GLY ER+GA+++V  S+D+++RV+SQLK + RPMYS+PP
Sbjct: 256 LLVAQSYAKNMGLYGERVGALSIVSKSADVSSRVESQLKLVIRPMYSSPP 305

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P46645|AAT2_ARATH Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2

 Score =  350 bits (897), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 162/290 (55%), Positives = 216/290 (74%), Gaps = 1/290 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLE 115
           S F  V  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VLDVV+KAE  L+ +
Sbjct: 3   SVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLVND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               KEY+PI G++ FNK++A+L+ GAD+  + E RV TVQ LSGTGSLR+ A  ++ ++
Sbjct: 63  PSRVKEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTHY 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
             + + I  PTWGNH  +FN A +    +RYYDP T GLDF+G++ D+ AAP G+ +LLH
Sbjct: 123 HQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR F   G E
Sbjct: 183 ACAHNPTGVDPTSEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDTDAQSVRTFVADGGE 242

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            L+AQSY+KN+GLY ER+GA+++VC S+D+A++V+SQ+K + RPMYS+PP
Sbjct: 243 CLIAQSYAKNMGLYGERVGALSIVCKSADVASKVESQVKLVVRPMYSSPP 292

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P46644|AAT3_ARATH Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1

 Score =  346 bits (888), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 161/290 (55%), Positives = 212/290 (73%), Gaps = 1/290 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLE 115
           S F  +  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VV+KAE  L+ +
Sbjct: 47  SVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLIND 106

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           R   KEYLPI GL  FNK++A+L+ GAD+  ++E R+ TV+ LSGTGSLR+    + +++
Sbjct: 107 RTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAKHY 166

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + I+ PTWGNH  IF  A +    YRYYDP T GL+F+G++ D+ AA  GS +LLH
Sbjct: 167 HQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAAPGSIVLLH 226

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA  +R+F   G E
Sbjct: 227 ACAHNPTGVDPTIQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADGGE 286

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            LVAQSY+KN+GLY ER+GA+++VC S+D+A RV+SQLK + RPMYS+PP
Sbjct: 287 CLVAQSYAKNMGLYGERVGALSIVCKSADVAGRVESQLKLVIRPMYSSPP 336

Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P12344|AATM_BOVIN Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2

 Score =  345 bits (886), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 162/285 (56%), Positives = 204/285 (71%), Gaps = 1/285 (0%)

Query: 62  VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
           V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KE
Sbjct: 36  VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKE 95

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-V 180
           YLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V
Sbjct: 96  YLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFFKFSRDV 155

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
            +  PTWGNH  IF DA +    YRYYDPKT G DF G I DI   P  S ILLH CAHN
Sbjct: 156 FLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILLHACAHN 215

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DP PEQW+++A V+++ N   FFD+AYQGFASG  + DA +VR F  +G+ + + Q
Sbjct: 216 PTGVDPRPEQWKEMATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQ 275

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           SY+KN+GLY ER+GA  VVC  ++ A RV+SQLK L RPMYSNPP
Sbjct: 276 SYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNPP 320

Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P05202|AATM_MOUSE Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1

 Score =  343 bits (881), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 161/285 (56%), Positives = 205/285 (71%), Gaps = 1/285 (0%)

Query: 62  VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
           V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KE
Sbjct: 36  VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKE 95

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-V 180
           YLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V
Sbjct: 96  YLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDV 155

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
            +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI   P  S +LLH CAHN
Sbjct: 156 FLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHN 215

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DP PEQW++IA V+++KN   FFD+AYQGFASG  D DA +VR F  +G+ + + Q
Sbjct: 216 PTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQ 275

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           SY+KN+GLY ER+GA  VVC  ++ A RV+SQLK L RP+YSNPP
Sbjct: 276 SYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPP 320

Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P00505|AATM_HUMAN Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=3

 Score =  343 bits (881), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 161/285 (56%), Positives = 205/285 (71%), Gaps = 1/285 (0%)

Query: 62  VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
           V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KE
Sbjct: 36  VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKE 95

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-V 180
           YLPI GLA F K +AEL  G ++ VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V
Sbjct: 96  YLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDV 155

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
            +  PTWGNH  IF DA +    YRYYDPKT G DF G + DI   P  S +LLH CAHN
Sbjct: 156 FLPKPTWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHN 215

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DP PEQW++IA V++++N   FFD+AYQGFASG  D DA +VR F  +G+ + + Q
Sbjct: 216 PTGVDPRPEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQ 275

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           SY+KN+GLY ER+GA  +VC  +D A RV+SQLK L RPMYSNPP
Sbjct: 276 SYAKNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNPP 320

Plays a key role in amino acid metabolism. Important for metabolite exchange between mitochondria and cytosol. Facilitates cellular uptake of long-chain free fatty acids.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
224092554	466	predicted protein [Populus trichocarpa]	0.950	0.740	0.883	0.0
224143258	466	predicted protein [Populus trichocarpa]	0.950	0.740	0.875	1e-180
255548798	464	aspartate aminotransferase, putative [Ri	0.944	0.739	0.852	1e-174
81074221	462	aspartate aminotransferase-like [Solanum	0.950	0.746	0.839	1e-173
225430398	462	PREDICTED: aspartate aminotransferase, c	0.939	0.738	0.849	1e-173
147766607	462	hypothetical protein VITISV_000267 [Viti	0.939	0.738	0.846	1e-172
449441882	464	PREDICTED: aspartate aminotransferase, c	0.950	0.743	0.842	1e-168
400531510	368	aspartate aminotransferase, partial [Ile	0.950	0.937	0.818	1e-167
297798764	453	hypothetical protein ARALYDRAFT_491537 [	0.933	0.748	0.840	1e-166
15236129	453	aspartate aminotransferase [Arabidopsis	0.933	0.748	0.831	1e-165

>gi|224092554|ref|XP_002309659.1| predicted protein [Populus trichocarpa] gi|222855635|gb|EEE93182.1| predicted protein [Populus trichocarpa]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/352 (88%), Positives = 327/352 (92%), Gaps = 7/352 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTA-------GFIKTKSFGRVSMVAA 53
           MASTMLS+AS TPSASLSM E LKGK +LGS + ST         FIK KSFGR+SM  A
Sbjct: 1   MASTMLSLASTTPSASLSMQEILKGKARLGSGSVSTLFNKEKGNPFIKAKSFGRISMTVA 60

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VNVSRFEG+ MAPPDPILGVSEAF+ADTD KKLNLGVGAYRTEELQPYVLDVVKKAENLM
Sbjct: 61  VNVSRFEGIAMAPPDPILGVSEAFRADTDVKKLNLGVGAYRTEELQPYVLDVVKKAENLM 120

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYLPIEGLAAFNKVTAELLFGADN V+K+QRVATVQGLSGTGSLRLAAALIER
Sbjct: 121 LERGENKEYLPIEGLAAFNKVTAELLFGADNPVIKQQRVATVQGLSGTGSLRLAAALIER 180

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGA+VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI+DIKAAP GSF+L
Sbjct: 181 YFPGAQVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVL 240

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNH+PFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 241 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHVPFFDVAYQGFASGSLDADASSVRLFAARG 300

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           MELL+AQSYSKNLGLYAERIGA+NVVCSS+D AARVKSQLKR+ARPMYSNPP
Sbjct: 301 MELLIAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPP 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143258|ref|XP_002324896.1| predicted protein [Populus trichocarpa] gi|222866330|gb|EEF03461.1| predicted protein [Populus trichocarpa]

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 308/352 (87%), Positives = 327/352 (92%), Gaps = 7/352 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTA-------GFIKTKSFGRVSMVAA 53
           MASTM+S+ASATPSASLS+ E LKGK++LGS++ ST          IK KSFGR+SM  A
Sbjct: 1   MASTMISLASATPSASLSVQETLKGKMRLGSSSVSTLFNKEKGNPSIKKKSFGRISMTVA 60

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VNVSRFEG+ MAPPDPILGVSEAF+AD D KKLNLGVGAYRTEELQPYVLDVVKKAENLM
Sbjct: 61  VNVSRFEGIAMAPPDPILGVSEAFRADIDVKKLNLGVGAYRTEELQPYVLDVVKKAENLM 120

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYL IEGLAAFNKVTAELLFGADN V+++QRVATVQGLSGTGSLRLAAALIER
Sbjct: 121 LERGENKEYLAIEGLAAFNKVTAELLFGADNQVIEQQRVATVQGLSGTGSLRLAAALIER 180

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGA+VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI+DIKAAP GSF+L
Sbjct: 181 YFPGAQVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVL 240

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 241 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARG 300

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AARVKSQLKR+ARPMYSNPP
Sbjct: 301 MELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPP 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548798|ref|XP_002515455.1| aspartate aminotransferase, putative [Ricinus communis] gi|223545399|gb|EEF46904.1| aspartate aminotransferase, putative [Ricinus communis]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/352 (85%), Positives = 319/352 (90%), Gaps = 9/352 (2%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGS-------TTNSTAGFIKTKSFGRVSMVAA 53
           MAS+M S+A A  S S SMH+ LK KV+LGS       T +    F+KTKS GR+SM AA
Sbjct: 1   MASSMFSLAGA--SLSPSMHDTLKEKVRLGSGSIGTWFTKDKVHSFMKTKSSGRISMTAA 58

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VN+SRFEG+TMA PDPILGVSEAF+AD D KKLNLGVGAYRTEEL PYVLDVVKKAENLM
Sbjct: 59  VNISRFEGITMALPDPILGVSEAFRADNDAKKLNLGVGAYRTEELHPYVLDVVKKAENLM 118

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYLPIEGLAAFNKVTAELLFGADN V+ +QRVATVQGLSGTGSLRLAAALIER
Sbjct: 119 LERGENKEYLPIEGLAAFNKVTAELLFGADNPVINQQRVATVQGLSGTGSLRLAAALIER 178

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YF GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP+TVGLDFEGMI+DIKAAP GSF+L
Sbjct: 179 YFLGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPRTVGLDFEGMISDIKAAPEGSFVL 238

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RG
Sbjct: 239 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADAASVRLFAARG 298

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AARVKSQLKR+ARPMYSNPP
Sbjct: 299 MELLVAQSYSKNLGLYAERIGALNVVCSSADAAARVKSQLKRIARPMYSNPP 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|81074221|gb|ABB55364.1| aspartate aminotransferase-like [Solanum tuberosum]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 292/348 (83%), Positives = 318/348 (91%), Gaps = 3/348 (0%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNST---AGFIKTKSFGRVSMVAAVNVS 57
           MASTM S+AS TPSAS+S+ + LK K+KLG+++        F+K KS G+ +M  AVNVS
Sbjct: 1   MASTMFSLASVTPSASISLQDNLKPKLKLGTSSQRAFPRKDFMKAKSNGQTTMAVAVNVS 60

Query: 58  RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG 117
           RFEG+TMAPPDPILGVSEAFKADT+E KLNLGVGAYRTE+LQPYVL+VVKKAENL+LERG
Sbjct: 61  RFEGITMAPPDPILGVSEAFKADTNELKLNLGVGAYRTEDLQPYVLNVVKKAENLILERG 120

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
           ENKEYLPIEGLAAFNKVTAELLFG DN VL++QRVAT+QGLSGTGSLR+AAALIERYFPG
Sbjct: 121 ENKEYLPIEGLAAFNKVTAELLFGKDNPVLQQQRVATIQGLSGTGSLRIAAALIERYFPG 180

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           +K+LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF GMI DIKAAP GSFILLHGC
Sbjct: 181 SKILISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFAGMIEDIKAAPEGSFILLHGC 240

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
           AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVR+FA RGMELL
Sbjct: 241 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDASSVRMFAARGMELL 300

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           VAQSYSKNLGLY ERIGA+NV+CSS+  A RVKSQLKRLARPMYSNPP
Sbjct: 301 VAQSYSKNLGLYGERIGAINVLCSSAYAATRVKSQLKRLARPMYSNPP 348

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430398|ref|XP_002285385.1| PREDICTED: aspartate aminotransferase, chloroplastic [Vitis vinifera] gi|296082090|emb|CBI21095.3| unnamed protein product [Vitis vinifera]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 299/352 (84%), Positives = 319/352 (90%), Gaps = 11/352 (3%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNST-------AGFIKTKSFGRVSMVAA 53
           MASTMLS+ SA    +L + E  KGK+ LGS+  S+         F+KTKSFGR++M  A
Sbjct: 1   MASTMLSLVSA----ALPLQENHKGKMNLGSSDCSSFLRKEKRNPFMKTKSFGRINMAIA 56

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VN SRFEGVTMAPPDPILGVSEAF+AD  E KLNLGVGAYRTEELQPYVL+VVKKAENLM
Sbjct: 57  VNTSRFEGVTMAPPDPILGVSEAFRADNSEMKLNLGVGAYRTEELQPYVLNVVKKAENLM 116

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           LERGENKEYLPIEGLAAFNKVTAELLFGA N V+++QRVATVQGLSGTGSLRLAAALIER
Sbjct: 117 LERGENKEYLPIEGLAAFNKVTAELLFGAGNPVIEQQRVATVQGLSGTGSLRLAAALIER 176

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF+GMI+DIKAAP GSF+L
Sbjct: 177 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFDGMISDIKAAPEGSFVL 236

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 237 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARG 296

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AARVKSQLKR+ARPMYSNPP
Sbjct: 297 MELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPP 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766607|emb|CAN76227.1| hypothetical protein VITISV_000267 [Vitis vinifera]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/352 (84%), Positives = 319/352 (90%), Gaps = 11/352 (3%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNST-------AGFIKTKSFGRVSMVAA 53
           MASTMLS+ SA    +L + E  KGK+ LGS+  S+         F+KTKSFGR++M  A
Sbjct: 1   MASTMLSLVSA----ALPLQENHKGKMNLGSSDCSSFLRKEKRNPFMKTKSFGRINMAIA 56

Query: 54  VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLM 113
           VN SRFEGVTMAPPDPILGVSEAF+AD  E KLNLGVGAYRTEELQPYVL+VVKKAENLM
Sbjct: 57  VNTSRFEGVTMAPPDPILGVSEAFRADNSEMKLNLGVGAYRTEELQPYVLNVVKKAENLM 116

Query: 114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER 173
           L+RGENKEYLPIEGLAAFNKVTAELLFGA N V+++QRVATVQGLSGTGSLRLAAALIER
Sbjct: 117 LKRGENKEYLPIEGLAAFNKVTAELLFGAGNPVIEQQRVATVQGLSGTGSLRLAAALIER 176

Query: 174 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL 233
           YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF+GMI+DIKAAP GSF+L
Sbjct: 177 YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFDGMISDIKAAPEGSFVL 236

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG 293
           LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG
Sbjct: 237 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARG 296

Query: 294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           MELLVAQSYSKNLGLYAERIGA+NVVCSS+D AARVKSQLKR+ARPMYSNPP
Sbjct: 297 MELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPP 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441882|ref|XP_004138711.1| PREDICTED: aspartate aminotransferase, chloroplastic-like [Cucumis sativus] gi|449499236|ref|XP_004160763.1| PREDICTED: aspartate aminotransferase, chloroplastic-like [Cucumis sativus]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/350 (84%), Positives = 317/350 (90%), Gaps = 5/350 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTT-----NSTAGFIKTKSFGRVSMVAAVN 55
           MAS++L +AS +PSAS S  +  K K+ LGS++     +    F K KSF R+SMVA+VN
Sbjct: 1   MASSVLPLASVSPSASRSSFDNNKKKLNLGSSSLTFDLDKNHPFAKAKSFSRISMVASVN 60

Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           VSRFEG+TMAPPDPILGVSEAFKADT   KLNLGVGAYRTEELQPYVLDVVKK E LMLE
Sbjct: 61  VSRFEGITMAPPDPILGVSEAFKADTHGNKLNLGVGAYRTEELQPYVLDVVKKVEALMLE 120

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           RG+NKEYLPIEGLAAFNK TAELLFGADN V+K+QRVAT+QGLSGTGSLRLAAALIERYF
Sbjct: 121 RGDNKEYLPIEGLAAFNKATAELLFGADNPVIKQQRVATIQGLSGTGSLRLAAALIERYF 180

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
           PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI+DIKAAP GSF+LLH
Sbjct: 181 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVLLH 240

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DASSVRLFA RG+E
Sbjct: 241 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARGLE 300

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           LLVAQSYSKNLGLYAERIGA+NVVC+S+D A RVKSQLKRLARPMYSNPP
Sbjct: 301 LLVAQSYSKNLGLYAERIGAINVVCTSADAAIRVKSQLKRLARPMYSNPP 350

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400531510|gb|AFP86894.1| aspartate aminotransferase, partial [Ilex paraguariensis]

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 289/353 (81%), Positives = 316/353 (89%), Gaps = 8/353 (2%)

Query: 1   MAS-TMLSIASATPSASLSMHEKLKGKVKLGSTTNST-------AGFIKTKSFGRVSMVA 52
           MAS TMLS+AS + S  LS+ + LK K+KL S+ +++         F  TK+FGR++M  
Sbjct: 1   MASNTMLSLASTSASPLLSLQDTLKTKLKLTSSNHTSFLGKGKSVPFTNTKTFGRITMAV 60

Query: 53  AVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENL 112
           AV VSRFE +TMAPPDPILGVSEAF+ADT+E KLNLGVGAYRTEELQPYVL+VVKKAENL
Sbjct: 61  AVKVSRFESITMAPPDPILGVSEAFRADTNEMKLNLGVGAYRTEELQPYVLNVVKKAENL 120

Query: 113 MLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE 172
           MLERGENKEYLPIEGLAAFNKVTAELLFGADN V+++QRVATVQGLSGTGSLRLAAALIE
Sbjct: 121 MLERGENKEYLPIEGLAAFNKVTAELLFGADNPVIQQQRVATVQGLSGTGSLRLAAALIE 180

Query: 173 RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI 232
           RYFPGAKVLISSPTWGNHKNIFNDA VPWSEYRYY PKTVGLDF+GMI+DIKAAP GSF+
Sbjct: 181 RYFPGAKVLISSPTWGNHKNIFNDAGVPWSEYRYYGPKTVGLDFDGMISDIKAAPEGSFV 240

Query: 233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR 292
           LLHG AHNPTGIDPTPEQWE IADVIQEKN IPFFDVAYQGFASGSLD DASSVRLFA R
Sbjct: 241 LLHGRAHNPTGIDPTPEQWEIIADVIQEKNLIPFFDVAYQGFASGSLDADASSVRLFAAR 300

Query: 293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           GMELLVAQSYSKNLGLYAERIGA+NV+CS+++ A RVKSQLKRLARPMYSNPP
Sbjct: 301 GMELLVAQSYSKNLGLYAERIGAINVICSTAEAATRVKSQLKRLARPMYSNPP 353

Source: Ilex paraguariensis

Species: Ilex paraguariensis

Genus: Ilex

Family: Aquifoliaceae

Order: Aquifoliales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798764|ref|XP_002867266.1| hypothetical protein ARALYDRAFT_491537 [Arabidopsis lyrata subsp. lyrata] gi|297313102|gb|EFH43525.1| hypothetical protein ARALYDRAFT_491537 [Arabidopsis lyrata subsp. lyrata]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/345 (84%), Positives = 311/345 (90%), Gaps = 6/345 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
           MAS+MLS+ S TP   L   E  K K+KLG  T+S+  F+K KSF RV+M  AV  SRFE
Sbjct: 1   MASSMLSLGS-TP---LLPREINKDKLKLG--TSSSNPFLKAKSFSRVTMTVAVKPSRFE 54

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G+TMAPPDPILGVSEAFKADT+E KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct: 55  GITMAPPDPILGVSEAFKADTNEMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
           EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct: 115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct: 175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct: 235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           SYSKNLGLYAERIGA+NVVCSS+D A RVKSQLKR+ARPMYSNPP
Sbjct: 295 SYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPP 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236129|ref|NP_194927.1| aspartate aminotransferase [Arabidopsis thaliana] gi|30689228|ref|NP_849483.1| aspartate aminotransferase [Arabidopsis thaliana] gi|20532373|sp|P46248.2|AAT5_ARATH RecName: Full=Aspartate aminotransferase, chloroplastic; AltName: Full=Transaminase A; Flags: Precursor gi|2827636|emb|CAA16590.1| aspartate aminotransferase [Arabidopsis thaliana] gi|7270103|emb|CAB79917.1| aspartate aminotransferase [Arabidopsis thaliana] gi|15451160|gb|AAK96851.1| aspartate aminotransferase [Arabidopsis thaliana] gi|20148355|gb|AAM10068.1| aspartate aminotransferase [Arabidopsis thaliana] gi|222423613|dbj|BAH19775.1| AT4G31990 [Arabidopsis thaliana] gi|332660587|gb|AEE85987.1| aspartate aminotransferase [Arabidopsis thaliana] gi|332660588|gb|AEE85988.1| aspartate aminotransferase [Arabidopsis thaliana]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/345 (83%), Positives = 308/345 (89%), Gaps = 6/345 (1%)

Query: 1   MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
           MAS MLS+ S     SL   E  K K+KLG  T+++  F+K KSF RV+M  AV  SRFE
Sbjct: 1   MASLMLSLGST----SLLPREINKDKLKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFE 54

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct: 55  GITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
           EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct: 115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct: 175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct: 235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           SYSKNLGLYAERIGA+NVVCSS+D A RVKSQLKR+ARPMYSNPP
Sbjct: 295 SYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPP 339

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2116682	462	ASP5 "aspartate aminotransfera	0.933	0.733	0.831	2.3e-149
UNIPROTKB|P26563	454	P26563 "Aspartate aminotransfe	0.933	0.746	0.811	5.1e-145
UNIPROTKB|P37833	407	LOC_Os01g55540 "Aspartate amin	0.796	0.710	0.572	2.2e-89
UNIPROTKB|P28734	405	P28734 "Aspartate aminotransfe	0.796	0.713	0.582	9.6e-89
TAIR|locus:2180826	405	ASP2 "aspartate aminotransfera	0.796	0.713	0.558	6e-87
TAIR|locus:2144226	449	ASP3 "aspartate aminotransfera	0.796	0.643	0.551	3.8e-85
UNIPROTKB|P12344	430	GOT2 "Aspartate aminotransfera	0.848	0.716	0.536	4.9e-85
MGI|MGI:95792	430	Got2 "glutamate oxaloacetate t	0.873	0.737	0.520	8e-85
UNIPROTKB|P00505	430	GOT2 "Aspartate aminotransfera	0.826	0.697	0.544	1e-84
ZFIN|ZDB-GENE-030131-7917	428	got2b "glutamic-oxaloacetic tr	0.804	0.682	0.549	1.3e-84

TAIR|locus:2116682 ASP5 "aspartate aminotransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
 Identities = 287/345 (83%), Positives = 308/345 (89%)

Query:     1 MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFE 60
             MAS MLS+ S     SL   E  K K+KLG  T+++  F+K KSF RV+M  AV  SRFE
Sbjct:     1 MASLMLSLGST----SLLPREINKDKLKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFE 54

Query:    61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
             G+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NK
Sbjct:    55 GITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNK 114

Query:   121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
             EYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV
Sbjct:   115 EYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKV 174

Query:   181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
             +ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHN
Sbjct:   175 VISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHN 234

Query:   241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
             PTGIDPTPEQW KIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLFA RGME  VAQ
Sbjct:   235 PTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGMEFFVAQ 294

Query:   301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
             SYSKNLGLYAERIGA+NVVCSS+D A RVKSQLKR+ARPMYSNPP
Sbjct:   295 SYSKNLGLYAERIGAINVVCSSADAATRVKSQLKRIARPMYSNPP 339

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0033853 "aspartate-prephenate aminotransferase activity" evidence=IDA

GO:0033854 "glutamate-prephenate aminotransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|P26563 P26563 "Aspartate aminotransferase P2, mitochondrial" [Lupinus angustifolius (taxid:3871)]

 Score = 1417 (503.9 bits), Expect = 5.1e-145, P = 5.1e-145
 Identities = 279/344 (81%), Positives = 302/344 (87%)

Query:     3 STMLSIASATPSASLSMHEKLK-GKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEG 61
             S++LSI    PS SL  ++KLK G   L  +   +  F   KS  R+SMVAAVNVSRFEG
Sbjct:     1 SSLLSI----PSLSLQYNDKLKVGGNSLRFSKEQSNTFSNAKSSCRISMVAAVNVSRFEG 56

Query:    62 VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
             + MAPPDPILGVSEAF+ADT + KLNLGVGAYRTEELQPYVL VV KAENLMLERG+NKE
Sbjct:    57 IPMAPPDPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLMLERGQNKE 116

Query:   122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL 181
             YL IEGLAAFNK TAELL GADN  +K+QRVATVQGLSGTGSLRL AALIERYFPGAKVL
Sbjct:   117 YLAIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFPGAKVL 176

Query:   182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241
             IS+PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI DIKAAP G+F+LLHGCAHNP
Sbjct:   177 ISAPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLHGCAHNP 236

Query:   242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301
             TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD DA+SVRLF  RG+E+LVAQS
Sbjct:   237 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGLEVLVAQS 296

Query:   302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
             YSKNLGLYAERIGA+NV+ SS + AARVKSQLKR+ARPMYSNPP
Sbjct:   297 YSKNLGLYAERIGAINVISSSPESAARVKSQLKRIARPMYSNPP 340

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

UNIPROTKB|P37833 LOC_Os01g55540 "Aspartate aminotransferase, cytoplasmic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 166/290 (57%), Positives = 217/290 (74%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
             S F G+  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VL+VV++AE +++  
Sbjct:     5 SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 64

Query:   117 GEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
                 KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct:    65 PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 124

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
                 + I  PTWGNH  +F  A +    YRYYDP T GLDF+G++ D+ +AP G+ +LLH
Sbjct:   125 HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLH 184

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct:   185 ACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGE 244

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
             LL+AQSY+KN+GLY ER+GA+++VC S+D+A RV+SQLK + RPMYSNPP
Sbjct:   245 LLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPP 294

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006522 "alanine metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006807 "nitrogen compound metabolic process" evidence=ISS

UNIPROTKB|P28734 P28734 "Aspartate aminotransferase, cytoplasmic" [Daucus carota (taxid:4039)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 169/290 (58%), Positives = 219/290 (75%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
             S F  V  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VVKKAE +++ +
Sbjct:     3 SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVND 62

Query:   116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
             +   KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++
Sbjct:    63 QSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
                 V I  PTWGNH  IF  A +    YRYY+P+T GLDFEGM+ D+ +AP G+ +LLH
Sbjct:   123 HEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLH 182

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR+F   G E
Sbjct:   183 ACAHNPTGVDPTIEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDADAQSVRIFVADGGE 242

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
              L AQSY+KN+GLY ER+GA+++VC ++D+A++V+SQLK + RPMYS+PP
Sbjct:   243 CLAAQSYAKNMGLYGERVGALSIVCKTADVASKVESQLKLVIRPMYSSPP 292

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

TAIR|locus:2180826 ASP2 "aspartate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 162/290 (55%), Positives = 216/290 (74%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLE 115
             S F  V  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VLDVV+KAE  L+ +
Sbjct:     3 SVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLVND 62

Query:   116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
                 KEY+PI G++ FNK++A+L+ GAD+  + E RV TVQ LSGTGSLR+ A  ++ ++
Sbjct:    63 PSRVKEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTHY 122

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               + + I  PTWGNH  +FN A +    +RYYDP T GLDF+G++ D+ AAP G+ +LLH
Sbjct:   123 HQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLLH 182

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT EQWE+I  +++ K+ +PFFD AYQGFASGSLD DA SVR F   G E
Sbjct:   183 ACAHNPTGVDPTSEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDTDAQSVRTFVADGGE 242

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
              L+AQSY+KN+GLY ER+GA+++VC S+D+A++V+SQ+K + RPMYS+PP
Sbjct:   243 CLIAQSYAKNMGLYGERVGALSIVCKSADVASKVESQVKLVVRPMYSSPP 292

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

TAIR|locus:2144226 ASP3 "aspartate aminotransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 160/290 (55%), Positives = 212/290 (73%)

Query:    57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
             S F  +  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VV+KAE  ++ +
Sbjct:    47 SVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLIND 106

Query:   116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
             R   KEYLPI GL  FNK++A+L+ GAD+  ++E R+ TV+ LSGTGSLR+    + +++
Sbjct:   107 RTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAKHY 166

Query:   176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
                 + I+ PTWGNH  IF  A +    YRYYDP T GL+F+G++ D+ AA  GS +LLH
Sbjct:   167 HQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAAPGSIVLLH 226

Query:   236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
              CAHNPTG+DPT +QWE+I  +++ K  +PFFD AYQGFASGSLD DA  +R+F   G E
Sbjct:   227 ACAHNPTGVDPTIQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADGGE 286

Query:   296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
              LVAQSY+KN+GLY ER+GA+++VC S+D+A RV+SQLK + RPMYS+PP
Sbjct:   287 CLVAQSYAKNMGLYGERVGALSIVCKSADVAGRVESQLKLVIRPMYSSPP 336

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0010150 "leaf senescence" evidence=IEP

GO:0005777 "peroxisome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009735 "response to cytokinin stimulus" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|P12344 GOT2 "Aspartate aminotransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 167/311 (53%), Positives = 216/311 (69%)

Query:    46 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDV 105
             G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  
Sbjct:    20 GLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPS 79

Query:   106 VKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR 165
             V+KAE  +  +  +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR
Sbjct:    80 VRKAEAQIAAKNLDKEYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALR 139

Query:   166 LAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224
             + A+ ++R+F  ++ V +  PTWGNH  IF DA +    YRYYDPKT G DF G I DI 
Sbjct:   140 IGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDIS 199

Query:   225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS 284
               P  S ILLH CAHNPTG+DP PEQW+++A V+++ N   FFD+AYQGFASG  + DA 
Sbjct:   200 KIPAQSVILLHACAHNPTGVDPRPEQWKEMATVVKKNNLFAFFDMAYQGFASGDGNKDAW 259

Query:   285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNP 344
             +VR F  +G+ + + QSY+KN+GLY ER+GA  VVC  ++ A RV+SQLK L RPMYSNP
Sbjct:   260 AVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPMYSNP 319

Query:   345 PPMLLGIQLSS 355
             P  + G +++S
Sbjct:   320 P--INGARIAS 328

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0019551 "glutamate catabolic process to 2-oxoglutarate" evidence=IEA

GO:0019550 "glutamate catabolic process to aspartate" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0006533 "aspartate catabolic process" evidence=IEA

GO:0006532 "aspartate biosynthetic process" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

MGI|MGI:95792 Got2 "glutamate oxaloacetate transaminase 2, mitochondrial" [Mus musculus (taxid:10090)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 167/321 (52%), Positives = 220/321 (68%)

Query:    46 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDV 105
             G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  
Sbjct:    20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPS 79

Query:   106 VKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR 165
             V+KAE  +  +  +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR
Sbjct:    80 VRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALR 139

Query:   166 LAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224
             + A+ ++R+F  ++ V +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI 
Sbjct:   140 VGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDIS 199

Query:   225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS 284
               P  S +LLH CAHNPTG+DP PEQW++IA V+++KN   FFD+AYQGFASG  D DA 
Sbjct:   200 KIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAW 259

Query:   285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNP 344
             +VR F  +G+ + + QSY+KN+GLY ER+GA  VVC  ++ A RV+SQLK L RP+YSNP
Sbjct:   260 AVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNP 319

Query:   345 P---PMLLGIQLSSMNGKQRW 362
             P     +    L+S + +++W
Sbjct:   320 PLNGARIAATILTSPDLRKQW 340

GO:0003824 "catalytic activity" evidence=IEA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=ISO;IDA

GO:0005543 "phospholipid binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006107 "oxaloacetate metabolic process" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=ISO

GO:0006531 "aspartate metabolic process" evidence=ISO

GO:0006532 "aspartate biosynthetic process" evidence=IDA

GO:0006533 "aspartate catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0019550 "glutamate catabolic process to aspartate" evidence=IDA

GO:0019551 "glutamate catabolic process to 2-oxoglutarate" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0031406 "carboxylic acid binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043204 "perikaryon" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043648 "dicarboxylic acid metabolic process" evidence=ISO

GO:0045471 "response to ethanol" evidence=ISO

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

UNIPROTKB|P00505 GOT2 "Aspartate aminotransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 164/301 (54%), Positives = 211/301 (70%)

Query:    46 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDV 105
             G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  
Sbjct:    20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPS 79

Query:   106 VKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR 165
             V+KAE  +  +  +KEYLPI GLA F K +AEL  G ++ VLK  R  TVQ +SGTG+LR
Sbjct:    80 VRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALR 139

Query:   166 LAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK 224
             + A+ ++R+F  ++ V +  PTWGNH  IF DA +    YRYYDPKT G DF G + DI 
Sbjct:   140 IGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDIS 199

Query:   225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS 284
               P  S +LLH CAHNPTG+DP PEQW++IA V++++N   FFD+AYQGFASG  D DA 
Sbjct:   200 KIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLFAFFDMAYQGFASGDGDKDAW 259

Query:   285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNP 344
             +VR F  +G+ + + QSY+KN+GLY ER+GA  +VC  +D A RV+SQLK L RPMYSNP
Sbjct:   260 AVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTMVCKDADEAKRVESQLKILIRPMYSNP 319

Query:   345 P 345
             P
Sbjct:   320 P 320

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0016212 "kynurenine-oxoglutarate transaminase activity" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=IEA

GO:0006532 "aspartate biosynthetic process" evidence=IEA

GO:0019550 "glutamate catabolic process to aspartate" evidence=IEA

GO:0019551 "glutamate catabolic process to 2-oxoglutarate" evidence=IEA

GO:0045471 "response to ethanol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=EXP;ISS;IDA

GO:0006533 "aspartate catabolic process" evidence=IDA

GO:0015908 "fatty acid transport" evidence=IEP

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0006531 "aspartate metabolic process" evidence=ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0006536 "glutamate metabolic process" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0006094 "gluconeogenesis" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0019470 "4-hydroxyproline catabolic process" evidence=TAS

ZFIN|ZDB-GENE-030131-7917 got2b "glutamic-oxaloacetic transaminase 2b, mitochondrial (aspartate aminotransferase 2)" [Danio rerio (taxid:7955)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 162/295 (54%), Positives = 211/295 (71%)

Query:    62 VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE 121
             V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE+L+  +  +KE
Sbjct:    34 VQMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAESLIASKALDKE 93

Query:   122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-V 180
             YL I GL  FNK  AEL  G D+ VLK +R  TVQ +SGTGSLR+ A  + R+   A+ V
Sbjct:    94 YLGIVGLGDFNKACAELALGQDSDVLKSKRSITVQTISGTGSLRVGANFLSRFHTVARDV 153

Query:   181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
              +  P+WGNH  IF DA +    YRYYDP T G DF G + DI   P  S ILLH CAHN
Sbjct:   154 YLPKPSWGNHTPIFRDAGMQLKAYRYYDPATCGFDFTGALDDISKIPQNSVILLHACAHN 213

Query:   241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
             PTG+DP PEQW++++ VI+E+  +PFFD+AYQGFASG +D DA +VR F  +G  +L++Q
Sbjct:   214 PTGVDPRPEQWKELSAVIKERKLLPFFDMAYQGFASGDIDRDAWAVRYFIEQGHNILLSQ 273

Query:   301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSS 355
             S++KN+GLY ER+G   VVC  ++ A RV+SQLK L RP+YSNPP  + G +++S
Sbjct:   274 SFAKNMGLYGERVGGFTVVCGDAEEAKRVESQLKILIRPIYSNPP--MNGARIAS 326

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0080130 "L-phenylalanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0004069 "L-aspartate:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P12344	AATM_BOVIN	2, ., 6, ., 1, ., 1	0.5684	0.7823	0.6604	yes	no
P05202	AATM_MOUSE	2, ., 6, ., 1, ., 1	0.5649	0.7823	0.6604	yes	no
P46248	AAT5_ARATH	2, ., 6, ., 1, ., 1	0.8318	0.9338	0.7483	yes	no
Q28F67	AATM_XENTR	2, ., 6, ., 1, ., 1	0.5310	0.7961	0.6768	yes	no
Q5REB0	AATM_PONAB	2, ., 6, ., 1, ., 1	0.5614	0.7823	0.6604	yes	no
P00508	AATM_CHICK	2, ., 6, ., 1, ., 1	0.5368	0.7823	0.6713	yes	no
P00507	AATM_RAT	2, ., 6, ., 1, ., 1	0.5578	0.7823	0.6604	yes	no
P00506	AATM_PIG	2, ., 6, ., 1, ., 1	0.5344	0.8292	0.7	yes	no
P00505	AATM_HUMAN	2, ., 6, ., 1, ., 1	0.5649	0.7823	0.6604	yes	no
Q55F21	AATM_DICDI	2, ., 6, ., 1, ., 1	0.5209	0.8539	0.7276	yes	no
P08907	AATM_HORSE	2, ., 6, ., 1, ., 1	0.5379	0.7961	0.7206	yes	no
P26563	AATM_LUPAN	2, ., 6, ., 1, ., 1	0.8287	0.8980	0.7180	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.976
4th Layer	2.6.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0013044701	aspartate transaminase (EC-2.6.1.1) (466 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.V.2829.1	SubName- Full=Putative uncharacterized protein; (566 aa)						•	•		0.967
	estExt_fgenesh4_pm.C_LG_I0800	asparagine synthase (glutamine-hydrolyzing) (EC-6.3.5.4) (588 aa)						•	•		0.967
	estExt_Genewise1_v1.C_LG_IX3026	asparagine synthase (glutamine-hydrolyzing) (EC-6.3.5.4) (590 aa)						•	•		0.966
	gw1.IV.4171.1	proline dehydrogenase (EC-1.5.99.8) (435 aa)						•	•		0.927
	gw1.123.99.1	proline dehydrogenase (EC-1.5.99.8) (440 aa)						•	•		0.927
	eugene3.00030830	lactate dehydrogenase (EC-1.1.1.27) (351 aa)						•	•		0.911
	estExt_fgenesh4_pg.C_LG_XVI0748	adenylosuccinate synthase (EC-6.3.4.4); Plays an important role in the de novo pathway of purin [...] (491 aa)				•		•	•		0.902
	eugene3.00081537	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)						•	•		0.900
	estExt_Genewise1_v1.C_2730019	malate dehydrogenase (EC-1.1.1.37) (332 aa)						•	•		0.900
	eugene3.00021309	malate dehydrogenase (EC-1.1.1.37) (332 aa)						•	•		0.900

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
PLN02397	423	PLN02397, PLN02397, aspartate transaminase	0.0
PTZ00376	404	PTZ00376, PTZ00376, aspartate aminotransferase; Pr	1e-167
PRK09257	396	PRK09257, PRK09257, aromatic amino acid aminotrans	1e-152
COG1448	396	COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr	1e-149
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	5e-82
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	5e-35
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	5e-08
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	2e-06
PRK08637	388	PRK08637, PRK08637, hypothetical protein; Provisio	2e-06
PRK14809	357	PRK14809, PRK14809, histidinol-phosphate aminotran	6e-05

>gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase

 Score =  595 bits (1537), Expect = 0.0
 Identities = 208/309 (67%), Positives = 247/309 (79%)

Query: 37  AGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTE 96
             F+K KS  R SM AA   SRFE V  APPDPILGV+EAF AD    KLNLGVGAYRTE
Sbjct: 2   NPFLKAKSRSRSSMAAAAASSRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTE 61

Query: 97  ELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ 156
           E +P VL+VV+KAE  +L    NKEYLPIEGLA FNK++A+L +GAD+  +KE RVATVQ
Sbjct: 62  EGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQ 121

Query: 157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF 216
            LSGTGSLRL A  + R++PG+ + I +PTWGNH NIF DA VP   YRYYDPKT GLDF
Sbjct: 122 CLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDF 181

Query: 217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS 276
           +G++ D+KAAP GSF+LLH CAHNPTG+DPTPEQWE+I+D+I+ KNH+PFFD AYQGFAS
Sbjct: 182 DGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFAS 241

Query: 277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL 336
           G LD DA SVR+F   G E+LVAQSY+KN+GLY ER+GA++VVC S+D+A RVKSQLK +
Sbjct: 242 GDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLI 301

Query: 337 ARPMYSNPP 345
           ARPMYSNPP
Sbjct: 302 ARPMYSNPP 310

Length = 423

>gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional

 Score =  472 bits (1218), Expect = e-167
 Identities = 173/290 (59%), Positives = 222/290 (76%), Gaps = 1/290 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V + PPDPILG++ AFKAD    K+NLG+GAYR E  +PYVL+ V+KAE ++ E+
Sbjct: 3   SLFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEK 62

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPIEGL +F +   +LLFG  +  L E+R+ATVQ LSGTG+LRL    ++R+ P
Sbjct: 63  NLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLP 122

Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               V +S+PTW NH NIF  A +   EYRYYDPKT GLDF+GM+ D++ AP GS +LLH
Sbjct: 123 AGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DPT EQW++IADV++ KN IPFFD+AYQGFASG LD DA ++RLFA RG+E
Sbjct: 183 ACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVE 242

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            LVAQS+SKN+GLY ERIGA+++VC++ + AA V SQLK + RPMYS+PP
Sbjct: 243 FLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPP 292

Length = 404

>gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase; Provisional

 Score =  433 bits (1117), Expect = e-152
 Identities = 157/287 (54%), Positives = 197/287 (68%), Gaps = 1/287 (0%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +  AP DPILG+ EAF+AD    K+NLGVG Y+ E+ +  VL  VKKAE  +LE   
Sbjct: 2   FEHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YLPIEGLAA+ +   ELLFGAD+  L   RVATVQ   GTG+LR+ A  ++R FP A
Sbjct: 62  TKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDA 121

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           KV +S PTW NH+ IF  A +    Y YYD  T GLDF+ M+AD+  AP G  +LLHGC 
Sbjct: 122 KVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCC 181

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTG D TPEQW+++A++++E+  IPF D+AYQGF  G L+ DA  +R FA  G+ELLV
Sbjct: 182 HNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDG-LEEDAYGLRAFAAAGLELLV 240

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A S+SKN GLY ER+GA++VV   ++ A RV SQLK   R  YSNPP
Sbjct: 241 ASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPP 287

Length = 396

>gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score =  426 bits (1098), Expect = e-149
 Identities = 168/288 (58%), Positives = 208/288 (72%), Gaps = 1/288 (0%)

Query: 58  RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG 117
            FE +  AP DPILG+ EAFKAD    K+NLG+G Y+ E+ +  VL  VKKAE  +LE+ 
Sbjct: 1   MFEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQE 60

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
           + K YLPIEGL  F +   +LLFGAD+  L E RVATVQ L GTG+LR+AA  + R+FP 
Sbjct: 61  KTKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPD 120

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           A V IS PTW NHK IF  A +    Y YYD +T GLDF+GM+AD+K AP GS +LLHGC
Sbjct: 121 ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGC 180

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTGIDPT EQW+++AD+I+E+  IPFFD+AYQGFA G L+ DA ++RLFA  G ELL
Sbjct: 181 CHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELL 239

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           VA S+SKN GLY ER+GA++VV   ++ A RV SQLK + R  YSNPP
Sbjct: 240 VASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPP 287

Length = 396

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score =  253 bits (649), Expect = 5e-82
 Identities = 90/260 (34%), Positives = 121/260 (46%), Gaps = 14/260 (5%)

Query: 83  EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA 142
             K+NLG   Y  +      L  V KAE   L  G    Y P +GL    +  A+ L   
Sbjct: 1   TDKINLGSNEYLGDS---GTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLG-- 55

Query: 143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWS 202
            + VLK  R A V   SG G+   A   + R  PG  +L+ +PT+ ++  IF  A     
Sbjct: 56  RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVV 115

Query: 203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN 262
            Y  Y      LDF+ + A +K A  G+ ++LH   HNPTG   T E+ EK+ D+ +E N
Sbjct: 116 RYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHN 175

Query: 263 HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS 322
            +   D AY GF  G    DA + R     G  LLV  S+SK  GL   R+G +      
Sbjct: 176 ILLLVDEAYAGFVFG--SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNA-- 231

Query: 323 SDLAARVKSQLKRLARPMYS 342
                 V SQL++LARP YS
Sbjct: 232 -----AVISQLRKLARPFYS 246

Length = 357

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score =  130 bits (330), Expect = 5e-35
 Identities = 53/262 (20%), Positives = 94/262 (35%), Gaps = 23/262 (8%)

Query: 86  LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS 145
           ++L +G          +  +   A      R     Y P  GL    +  AE L      
Sbjct: 1   IDLSIGEPDFPPPPEVLEALAAAAL-----RAGLLGYYPDPGLPELREAIAEWLGRRGGV 55

Query: 146 VLKEQRVATVQGLSGTGSLRLAA-ALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY 204
            +  + +  V       +L L   AL+    PG +VL+  PT+  ++     A       
Sbjct: 56  DVPPEEI--VVTNGAQEALSLLLRALLN---PGDEVLVPDPTYPGYEAAARLAGAEVVPV 110

Query: 205 RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHI 264
              +     LD E  + +    P    + L+   +NPTG   + E+ E++A++ ++   +
Sbjct: 111 PLDEEGGFLLDLE--LLEAAKTPKTKLLYLNNP-NNPTGAVLSEEELEELAELAKKHGIL 167

Query: 265 PFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD 324
              D AY        D +             ++V +S+SK  GL   RIG +  +     
Sbjct: 168 IISDEAYAELVY---DGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYL--IAP--- 219

Query: 325 LAARVKSQLKRLARPMYSNPPP 346
               +  +LK+L     S P  
Sbjct: 220 -PEELLERLKKLLPYTTSGPST 240

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 47/285 (16%)

Query: 75  EAFKADTDEKKLNLGVGAYRTEELQP------YVLDVVKKAENLMLERGENKEYLPIEGL 128
            A +    E  ++L +G       +P      ++++   +A    LE G    Y P  G+
Sbjct: 20  AAAELKGKEDVIDLSIG-------EPDFPTPEHIIEAAIEA----LEEGGTH-YTPSAGI 67

Query: 129 AAFNKVTAELL---FGADNSVLKEQRVATVQGLSGTGSLRLAA-ALIERYFPGAKVLISS 184
               +  AE     +G D  V  E+ +    G     +L LA  AL+    PG +VLI  
Sbjct: 68  PELREAIAEKYKRRYGLD--VDPEEEIIVTAG--AKEALFLAFLALLN---PGDEVLIPD 120

Query: 185 PTWGNHKNIFN--DARVPWSEYRYYDPKTVGLDFEGMIADIKAA--PGGSFILLHGCAHN 240
           P + +++        +                 F+  + D++AA  P    I+L    +N
Sbjct: 121 PGYPSYEAAVKLAGGKP-----VPVPLDEEENGFKPDLEDLEAAITPKTKAIIL-NSPNN 174

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG   + E+ + I ++ +E + I   D  Y+         +  S+   A      +   
Sbjct: 175 PTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYD--GAEHPSILELAGARDRTITIN 232

Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           S+SK  G+   RIG +  V    +L A     L++L   + S  P
Sbjct: 233 SFSKTYGMTGWRIGWV--VGPPEELIAA----LRKLKSYLTSCAP 271

Length = 393

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 167 AAALIERYF-----PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA 221
           +  LIE        PG  VLI  PT+  ++     A     +      K   LD + ++A
Sbjct: 84  SDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPL---KEFRLDLDAILA 140

Query: 222 DIKAAPGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD 280
            I+      F+    C  +NPTG     E+   + + +  +  +   D AY  F+     
Sbjct: 141 AIRDKTKLVFL----CNPNNPTGTLLPREELRALLEAL-PEGGLVVIDEAYIEFS----- 190

Query: 281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIG 314
              SS+ L       L+V +++SK  GL   R+G
Sbjct: 191 -PESSLELLKYPP-NLIVLRTFSKAFGLAGLRVG 222

Length = 356

>gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 176 PGAKVLISSPTWGNHKNIFNDAR-VPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFIL 233
            G  VL+    WGN+K  FN  R      Y  +D +  G D + +   ++AA   G  I+
Sbjct: 92  QGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFD-EDGGFDTDALKEALQAAYNKGKVIV 150

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGF 274
           +    +NPTG  PT ++   I + I+E        +   D AY G 
Sbjct: 151 ILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGL 196

Length = 388

>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 15/171 (8%)

Query: 160 GTGSLR-LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG 218
           G G+L  LA A+++   PG  VL+  P +  +      AR    E R Y P +   DFE 
Sbjct: 91  GDGALDYLARAMLD---PGDTVLVPDPGFAYYGM---SARYHHGEVREY-PVSKADDFEQ 143

Query: 219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS 278
               +  A  G  I+     HNPTG +   ++ E +A+   E+  +   D AY  FA   
Sbjct: 144 TADTVLDAYDGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLV-VVDEAYGEFA--- 199

Query: 279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV 329
                S+V L   R  ++ V +++SK  GL   R+G   V    +D  ARV
Sbjct: 200 --ERPSAVALVEERD-DVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARV 247

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	100.0
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	100.0
PLN02397	423	aspartate transaminase	100.0
PTZ00376	404	aspartate aminotransferase; Provisional	100.0
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	100.0
PRK09257	396	aromatic amino acid aminotransferase; Provisional	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PLN00175	413	aminotransferase family protein; Provisional	100.0
PLN02187	462	rooty/superroot1	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
PLN02368	407	alanine transaminase	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	100.0
PRK07366	388	succinyldiaminopimelate transaminase; Validated	100.0
PRK08636	403	aspartate aminotransferase; Provisional	100.0
PRK08068	389	transaminase; Reviewed	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
PRK06348	384	aspartate aminotransferase; Provisional	100.0
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	100.0
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	100.0
PLN02656	409	tyrosine transaminase	100.0
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PTZ00377	481	alanine aminotransferase; Provisional	100.0
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	100.0
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	100.0
PRK06855	433	aminotransferase; Validated	100.0
PRK09148	405	aminotransferase; Validated	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
PRK07682	378	hypothetical protein; Validated	100.0
PRK06290	410	aspartate aminotransferase; Provisional	100.0
PRK05942	394	aspartate aminotransferase; Provisional	100.0
PRK12414	384	putative aminotransferase; Provisional	100.0
PTZ00433	412	tyrosine aminotransferase; Provisional	100.0
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	100.0
PLN02231	534	alanine transaminase	100.0
PRK07337	388	aminotransferase; Validated	100.0
PRK07550	386	hypothetical protein; Provisional	100.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	100.0
PRK05839	374	hypothetical protein; Provisional	100.0
PRK06107	402	aspartate aminotransferase; Provisional	100.0
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	100.0
PRK07683	387	aminotransferase A; Validated	100.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
PRK08912	387	hypothetical protein; Provisional	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
PRK09082	386	methionine aminotransferase; Validated	100.0
PRK07777	387	aminotransferase; Validated	100.0
PRK08361	391	aspartate aminotransferase; Provisional	100.0
PRK07324	373	transaminase; Validated	100.0
PRK08637	388	hypothetical protein; Provisional	100.0
PRK08175	395	aminotransferase; Validated	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
PRK09265	404	aminotransferase AlaT; Validated	100.0
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	100.0
PRK08363	398	alanine aminotransferase; Validated	100.0
PRK07568	397	aspartate aminotransferase; Provisional	100.0
PRK05764	393	aspartate aminotransferase; Provisional	100.0
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	100.0
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	100.0
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	100.0
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	100.0
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	100.0
PRK01533	366	histidinol-phosphate aminotransferase; Validated	100.0
PRK09275	527	aspartate aminotransferase; Provisional	100.0
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	100.0
PRK06358	354	threonine-phosphate decarboxylase; Provisional	100.0
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	100.0
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	100.0
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	100.0
PRK06836	394	aspartate aminotransferase; Provisional	100.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	100.0
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08056	356	threonine-phosphate decarboxylase; Provisional	100.0
PRK07392	360	threonine-phosphate decarboxylase; Validated	100.0
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	100.0
PRK09105	370	putative aminotransferase; Provisional	100.0
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	100.0
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	100.0
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03321	352	putative aminotransferase; Provisional	100.0
KOG0634	472	consensus Aromatic amino acid aminotransferase and	100.0
PRK08354	311	putative aminotransferase; Provisional	100.0
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.98
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.98
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.98
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.97
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.97
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.97
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.97
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.97
PRK07908	349	hypothetical protein; Provisional	99.97
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.97
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.94
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.94
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.92
PRK07049	427	methionine gamma-lyase; Validated	99.91
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.9
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.9
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.89
PLN02242	418	methionine gamma-lyase	99.86
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.86
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.86
PRK06234	400	methionine gamma-lyase; Provisional	99.86
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.85
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.85
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.85
PRK10534	333	L-threonine aldolase; Provisional	99.85
PLN02721	353	threonine aldolase	99.85
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.84
PRK02627	396	acetylornithine aminotransferase; Provisional	99.83
PRK08045	386	cystathionine gamma-synthase; Provisional	99.83
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.83
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.83
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.83
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.83
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.83
PRK08249	398	cystathionine gamma-synthase; Provisional	99.83
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.83
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.82
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.82
PRK08776	405	cystathionine gamma-synthase; Provisional	99.82
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.81
PRK07811	388	cystathionine gamma-synthase; Provisional	99.81
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.81
PLN02822	481	serine palmitoyltransferase	99.8
PRK07503	403	methionine gamma-lyase; Provisional	99.8
PRK07050	394	cystathionine beta-lyase; Provisional	99.8
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.8
PRK06460	376	hypothetical protein; Provisional	99.8
PRK02948	381	cysteine desulfurase; Provisional	99.8
PRK08861	388	cystathionine gamma-synthase; Provisional	99.79
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.79
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.79
PRK07582	366	cystathionine gamma-lyase; Validated	99.79
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.79
PRK08574	385	cystathionine gamma-synthase; Provisional	99.79
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.79
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.79
PLN02483	489	serine palmitoyltransferase	99.79
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.78
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.78
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.78
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.78
PRK06767	386	methionine gamma-lyase; Provisional	99.78
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.77
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.77
PRK13392	410	5-aminolevulinate synthase; Provisional	99.77
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.77
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.76
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.76
PLN02409	401	serine--glyoxylate aminotransaminase	99.76
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.76
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.76
PRK07179	407	hypothetical protein; Provisional	99.76
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.75
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.75
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.75
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.75
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.74
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.74
PRK05939	397	hypothetical protein; Provisional	99.74
PRK09028	394	cystathionine beta-lyase; Provisional	99.74
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.74
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.73
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.73
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.73
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.73
PRK07671	377	cystathionine beta-lyase; Provisional	99.72
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.72
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.72
PRK09064	407	5-aminolevulinate synthase; Validated	99.71
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.71
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.71
PRK08064	390	cystathionine beta-lyase; Provisional	99.71
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.71
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.7
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.7
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.7
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.7
PRK14012	404	cysteine desulfurase; Provisional	99.69
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.69
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.68
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.67
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.67
PRK07505	402	hypothetical protein; Provisional	99.67
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.67
PLN02509	464	cystathionine beta-lyase	99.67
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.67
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.67
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.66
PRK05968	389	hypothetical protein; Provisional	99.66
PRK13393	406	5-aminolevulinate synthase; Provisional	99.66
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.65
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.65
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.64
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.64
PRK05967	395	cystathionine beta-lyase; Provisional	99.64
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.64
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.62
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.62
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.62
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.62
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.61
PRK04260	375	acetylornithine aminotransferase; Provisional	99.61
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.61
PLN02651	364	cysteine desulfurase	99.59
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.59
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.59
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.58
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.54
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.54
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.53
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.53
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.52
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.51
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.5
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.5
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.5
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.5
PLN00144	382	acetylornithine transaminase	99.49
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.49
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.48
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.48
PLN02624	474	ornithine-delta-aminotransferase	99.48
PRK08114	395	cystathionine beta-lyase; Provisional	99.47
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.46
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.46
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.46
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.46
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.45
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.44
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.44
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.43
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.43
PLN02955	476	8-amino-7-oxononanoate synthase	99.42
PRK04311	464	selenocysteine synthase; Provisional	99.4
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.37
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.36
PRK06434	384	cystathionine gamma-lyase; Validated	99.36
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.36
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.35
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.34
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.33
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.28
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.28
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	99.28
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.28
PRK13237	460	tyrosine phenol-lyase; Provisional	99.27
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.26
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.25
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.25
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.25
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.23
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.19
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.16
PRK02769	380	histidine decarboxylase; Provisional	99.16
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.14
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.12
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.11
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.09
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.07
PLN03032	374	serine decarboxylase; Provisional	99.07
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.07
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.05
PRK06541	460	hypothetical protein; Provisional	99.04
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.03
PRK15029	755	arginine decarboxylase; Provisional	99.01
PRK03715	395	argD acetylornithine transaminase protein; Provisi	98.99
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	98.93
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	98.93
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	98.91
PLN02263	470	serine decarboxylase	98.91
PTZ00094	452	serine hydroxymethyltransferase; Provisional	98.9
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.9
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	98.88
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	98.86
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	98.85
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	98.84
PRK13580	493	serine hydroxymethyltransferase; Provisional	98.84
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	98.83
PLN02724	805	Molybdenum cofactor sulfurase	98.81
COG4100	416	Cystathionine beta-lyase family protein involved i	98.79
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	98.76
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	98.76
PLN02590	539	probable tyrosine decarboxylase	98.72
PRK15400	714	lysine decarboxylase CadA; Provisional	98.72
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	98.69
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	98.68
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	98.67
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	98.67
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	98.67
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	98.66
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	98.66
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	98.66
PLN02880	490	tyrosine decarboxylase	98.64
PLN03226	475	serine hydroxymethyltransferase; Provisional	98.64
PRK03080	378	phosphoserine aminotransferase; Provisional	98.63
PLN02271	586	serine hydroxymethyltransferase	98.63
PRK07482	461	hypothetical protein; Provisional	98.63
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	98.62
PRK06062	451	hypothetical protein; Provisional	98.6
PRK15399	713	lysine decarboxylase LdcC; Provisional	98.59
PRK12403	460	putative aminotransferase; Provisional	98.58
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	98.57
PRK05965	459	hypothetical protein; Provisional	98.57
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	98.56
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	98.53
PRK07046	453	aminotransferase; Validated	98.53
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.53
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	98.52
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.52
PRK13578	720	ornithine decarboxylase; Provisional	98.51
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	98.51
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	98.51
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	98.5
PRK07678	451	aminotransferase; Validated	98.5
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	98.49
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	98.49
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.47
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	98.45
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	98.42
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	98.41
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.4
PRK07481	449	hypothetical protein; Provisional	98.4
PRK06917	447	hypothetical protein; Provisional	98.4
PRK07483	443	hypothetical protein; Provisional	98.4
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	98.4
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	98.36
PRK07036	466	hypothetical protein; Provisional	98.36
PLN02760	504	4-aminobutyrate:pyruvate transaminase	98.36
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.35
PRK07480	456	putative aminotransferase; Validated	98.35
PRK06105	460	aminotransferase; Provisional	98.32
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.28
PRK05367	954	glycine dehydrogenase; Provisional	98.26
PRK06149	972	hypothetical protein; Provisional	98.24
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.21
PRK06148	1013	hypothetical protein; Provisional	98.2
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.17
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	98.14
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	98.13
PRK12566	954	glycine dehydrogenase; Provisional	98.11
PRK08297	443	L-lysine aminotransferase; Provisional	98.05
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	98.0
PRK05367	954	glycine dehydrogenase; Provisional	97.97
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	97.88
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	97.83
PLN02452	365	phosphoserine transaminase	97.79
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	97.79
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	97.7
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	97.65
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	97.61
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	97.61
PRK12462	364	phosphoserine aminotransferase; Provisional	97.54
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	97.49
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.45
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	97.41
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	97.38
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	97.35
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	97.33
PLN02672	1082	methionine S-methyltransferase	97.25
PLN02414	993	glycine dehydrogenase (decarboxylating)	97.23
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	96.6
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	96.37
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	96.26
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	96.15
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	96.07
KOG0629	510	consensus Glutamate decarboxylase and related prot	95.9
COG3844	407	Kynureninase [Amino acid transport and metabolism]	95.81
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	95.81
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	94.21
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	93.43
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	91.32
PRK12566	954	glycine dehydrogenase; Provisional	90.13
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	87.67

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.2e-53  Score=386.81  Aligned_cols=300  Identities=56%  Similarity=0.945  Sum_probs=288.5

Q ss_pred             cCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (363)
                      |+.++..++|||+++.+.|++++++++|||++|.|.|+.+.+++++.|+++...+.+......|.|..|.++++++++++
T Consensus         2 F~~i~~~p~DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~l   81 (396)
T COG1448           2 FEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKL   81 (396)
T ss_pred             ccccccCCCCchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999998777779999999999999999999


Q ss_pred             HhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHH
Q 017967          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (363)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (363)
                      +++...+.+.++++..+||.|||||+.+.+.++..+.|..+|.|++|+|+++..+++..|.++..||+++.++.++|++.
T Consensus        82 lFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~  161 (396)
T COG1448          82 LFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDG  161 (396)
T ss_pred             hcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHH
Confidence            99988778889999999999999999999999999889889999999999999999999999999999999899999999


Q ss_pred             HHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEE
Q 017967          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (363)
Q Consensus       219 l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~  298 (363)
                      +.+.|++.+++.++++++++|||||..++.++|.+|+++.++++++.+.|-+|++|..+ .++|...+|.|+.....+++
T Consensus       162 mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lv  240 (396)
T COG1448         162 MLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLV  240 (396)
T ss_pred             HHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999988 77899999999988888999


Q ss_pred             EEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       299 ~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      +.||||+||++|.|||.+.+++.|++.+.++.+|+..+++.+|++||..+..+++.+|++.
T Consensus       241 a~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p  301 (396)
T COG1448         241 ASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNP  301 (396)
T ss_pred             EehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCH
Confidence            9999999999999999999999999999999999999999999999999999999998854

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=100.00  E-value=8.4e-53  Score=376.38  Aligned_cols=315  Identities=58%  Similarity=0.990  Sum_probs=301.5

Q ss_pred             cCccchhhhhcccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC
Q 017967           45 FGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP  124 (363)
Q Consensus        45 ~~~~~~~~~~~~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~  124 (363)
                      .+..++++....|||++|+++|||||+.+++.|+.++++.+|||++|.|+|+++.|++++.|++|+.++.....+.+|.|
T Consensus        14 ~~~~a~~~~~~~s~~s~V~maPpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlp   93 (427)
T KOG1411|consen   14 LGLAAAASARASSWWSHVEMAPPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLP   93 (427)
T ss_pred             cchhhhhcccccchhhcCCCCCCCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhcc
Confidence            34445566666789999999999999999999999999999999999999999999999999999999887777799999


Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEE
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEY  204 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v  204 (363)
                      ..|+++|.+..+++.++...+.+...+|+++|+.+||||+.+.+.++..+-++..|.+++|+|.++.++++.+|+.+..|
T Consensus        94 I~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~y  173 (427)
T KOG1411|consen   94 ITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFY  173 (427)
T ss_pred             ccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeee
Confidence            99999999999999999998999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchh
Q 017967          205 RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (363)
Q Consensus       205 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~  284 (363)
                      .++++.+.++|++.+.+.+.+.+++..++++.+.|||||+..+.++|++|.++.++++++.|.|.+|++|..++.+.|..
T Consensus       174 rYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~  253 (427)
T KOG1411|consen  174 RYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQ  253 (427)
T ss_pred             eeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             HHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       285 ~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ++|.|++.+.+++++.||.|++||+|.|+|.+.++|.+++.+.++.+|++.+.+.++++||..+.+|++.+|++.
T Consensus       254 avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~  328 (427)
T KOG1411|consen  254 AVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDP  328 (427)
T ss_pred             HHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCCh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998865

>PLN02397 aspartate transaminase

Probab=100.00  E-value=2e-48  Score=379.99  Aligned_cols=324  Identities=65%  Similarity=1.057  Sum_probs=270.8

Q ss_pred             CCccccccccCccchhhhhcccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHc
Q 017967           36 TAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE  115 (363)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~  115 (363)
                      .++|-+.|++++-+|+.+...|.|+++...+.++|..+.+.++.+..+.+++|+.|.+.+.++++.+.+.+.++...+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~   80 (423)
T PLN02397          1 SNPFLKAKSRSRSSMAAAAASSRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLA   80 (423)
T ss_pred             CCcccccccccccchhhhhhhhHHHcCCcCCCChHHHHHHHHhhCCCcceEecccceeeCCCCCcccchHHHHHHHHhhc
Confidence            36788899999999999988999999999999999999998888777789999999866777777778889988777654


Q ss_pred             cCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh
Q 017967          116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN  195 (363)
Q Consensus       116 ~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~  195 (363)
                      .+...+|++..|.++||+++++++.+.......+++|...++.+|+|+..++..++..+.|||+|++++|+|+.|...++
T Consensus        81 ~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~  160 (423)
T PLN02397         81 GSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFR  160 (423)
T ss_pred             cCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH
Confidence            44446899999999999999999977665555556665556778888877776677767799999999999999999999


Q ss_pred             hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCc
Q 017967          196 DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA  275 (363)
Q Consensus       196 ~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~  275 (363)
                      ..|++++.+++.+++++++|++.+++.+...+++++++++++||||||.+++.+++++|+++|++||++||+||+|.+|.
T Consensus       161 ~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~  240 (423)
T PLN02397        161 DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFA  240 (423)
T ss_pred             HcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCcc
Confidence            99999999998544568999999998887543467899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcc
Q 017967          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSS  355 (363)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~  355 (363)
                      +++...+..++..+....+++|+++||||.|+++|||+||+++++++++.++++.+++....+..+.+++.+.|.+++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~  320 (423)
T PLN02397        241 SGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATI  320 (423)
T ss_pred             CCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH
Confidence            85321123455555444568999999999999999999999545666777777887888777777888999999999998


Q ss_pred             cccc
Q 017967          356 MNGK  359 (363)
Q Consensus       356 l~~~  359 (363)
                      |+..
T Consensus       321 L~~~  324 (423)
T PLN02397        321 LGDP  324 (423)
T ss_pred             hCCH
Confidence            8764

>PTZ00376 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.5e-47  Score=369.72  Aligned_cols=302  Identities=57%  Similarity=0.972  Sum_probs=247.6

Q ss_pred             ccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHH
Q 017967           58 RFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (363)
Q Consensus        58 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (363)
                      .|.++...+.+++..+.+.++...+++++||+.|.|.+..++..+.+.+.++...+.......+|++..|.++||+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~   83 (404)
T PTZ00376          4 LFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQK   83 (404)
T ss_pred             hhhcCCcCCCChHHHHHHHHhhcCCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHH
Confidence            36677777888888888877766556899999999755566666677888887665533334789999999999999999


Q ss_pred             HHhcCCCCcccCCcEEEEeccchhHHHHHHHHHH-HHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCH
Q 017967          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALI-ERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (363)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~-~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (363)
                      |+.+..+..+++++|++.+|.|+++|+.++..++ ..+.|||+|++++|+|+.|...++..|++++.+|+++++++++|+
T Consensus        84 ~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~  163 (404)
T PTZ00376         84 LLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDF  163 (404)
T ss_pred             HhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCH
Confidence            9977766677889998556999999999886544 345799999999999999999999999999999996555689999


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeE
Q 017967          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~v  296 (363)
                      +.+++.++...++++++++||||||||.+++.+++++|+++|++|+++||+||+|.+|.+++.+.+..++..+.+..+++
T Consensus       164 ~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~v  243 (404)
T PTZ00376        164 DGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEF  243 (404)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcE
Confidence            99999987533456788899999999999999999999999999999999999999999853211233444444445689


Q ss_pred             EEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       297 i~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      |+++||||.|+++|+|+||++++..+++.++++++++.+..+..+.+++.++|.+++.+|++.
T Consensus       244 i~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  306 (404)
T PTZ00376        244 LVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDP  306 (404)
T ss_pred             EEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCH
Confidence            999999999999999999995545668777778887777666677788999999999998764

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-47  Score=338.28  Aligned_cols=304  Identities=48%  Similarity=0.839  Sum_probs=289.9

Q ss_pred             ccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHc-cCCCCCCCCCcchHHHHHH
Q 017967           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGENKEYLPIEGLAAFNKV  134 (363)
Q Consensus        56 ~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-~~~~~~Y~~~~G~~~lr~a  134 (363)
                      +|+|.+++.+++..++.+.+.|+++..|.++||++|.|+++++.||++|.|+++...+.+ .+.+++|.|..|++.|+++
T Consensus         3 ~s~f~~I~~a~p~~vf~~~~~y~~d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~   82 (410)
T KOG1412|consen    3 MSFFANIPVAPPIEVFKLNASYGEDLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKA   82 (410)
T ss_pred             cchhcCCccCChHHHHhhHHHhcccCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhh
Confidence            578999999999999999999999999999999999999999999999999999887763 4678999999999999999


Q ss_pred             HHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC-CeEEEecccCCCCC
Q 017967          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV-PWSEYRYYDPKTVG  213 (363)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~-~~~~v~~~~~~~~~  213 (363)
                      .++.+.+...+.+.++++.-+|+.+||||+.+.+.++..+.+...|.+.+|+|.++..+++..|. ++..+++++.+..+
T Consensus        83 A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~  162 (410)
T KOG1412|consen   83 ATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKC  162 (410)
T ss_pred             hHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCce
Confidence            99999999999999999999999999999999999999888888999999999999999999994 68899999888899


Q ss_pred             CCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC
Q 017967          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (363)
Q Consensus       214 ~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~  293 (363)
                      +|++.|...++.+|++.++++..+.|||||...+.++|.+|+++.++++++.+.|-+|++|..++++.|.+.+|.|++.+
T Consensus       163 ~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g  242 (410)
T KOG1412|consen  163 VDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQG  242 (410)
T ss_pred             ecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcC
Confidence            99999999999999999888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       294 ~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ..++++.||+|+||++|.|+|.+.++..++..+..+.+||..+.+..+++||.++.+|++++|+.+
T Consensus       243 ~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP  308 (410)
T KOG1412|consen  243 FELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTP  308 (410)
T ss_pred             CeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCH
Confidence            999999999999999999999999999999999999999999999999999999999999998854

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=100.00  E-value=6.5e-46  Score=360.04  Aligned_cols=298  Identities=52%  Similarity=0.878  Sum_probs=242.7

Q ss_pred             cCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (363)
                      |.++...+++++..+...++....+++|+|++|.|.+.+..++..+.+.++..+........+|.+..|.++||++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~   81 (396)
T PRK09257          2 FEHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQEL   81 (396)
T ss_pred             cccCCCCCCChHHHHHHHHhhCCCcCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHH
Confidence            55677778888888877777655568999999986433333333578888887776443446899999999999999999


Q ss_pred             HhcCCCCcccCCcE--EEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCH
Q 017967          139 LFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (363)
Q Consensus       139 l~~~~~~~~~~~~i--~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (363)
                      +.+..+..+++++|  ++  |.|+++|+.++.+++..+.|||+|++++|+|+.|..+++..|++++.+|+.+++++++|+
T Consensus        82 ~~~~~~~~~~~~~i~v~i--T~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~  159 (396)
T PRK09257         82 LFGADSPALAAGRVATVQ--TPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDF  159 (396)
T ss_pred             hcCCCCcccccCeEEEEe--cCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCH
Confidence            98776666788887  56  999999999996656556899999999999999999999999999999985455689999


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeE
Q 017967          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~v  296 (363)
                      +.+++.++..+.+++++++||||||||.+++.+++++|+++|++|+++||+||+|.+|.++. +.+..++..+....+++
T Consensus       160 ~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~~~v  238 (396)
T PRK09257        160 DAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGL-EEDAYGLRAFAAAGLEL  238 (396)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccch-HHHHHHHHHHHhcCCcE
Confidence            99999887544456888889999999999999999999999999999999999999998641 12244555554456789


Q ss_pred             EEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       297 i~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      |+++||||.|+++|+|+||+++++++++.+.+++++++...+..+.+++.+.|.+++.+|++.
T Consensus       239 i~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  301 (396)
T PRK09257        239 LVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDP  301 (396)
T ss_pred             EEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCH
Confidence            999999999999999999994445566666677777777666777788999999999988763

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=6.2e-46  Score=357.23  Aligned_cols=258  Identities=21%  Similarity=0.261  Sum_probs=223.9

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCc-EEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR-VATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~-i~~~~t~ggt  161 (363)
                      .++|+|++|+|. ..    .++.+.+++.+.+..+.. .|++..|.++||+++|+++.++++..+++++ |++  |.|++
T Consensus        28 ~~vi~l~iG~Pd-~~----~p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiiv--t~Ga~   99 (393)
T COG0436          28 EDVIDLSIGEPD-FP----TPEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIV--TAGAK   99 (393)
T ss_pred             CCEEEeCCCCCC-CC----CCHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--eCCHH
Confidence            479999999982 22    355677777666654332 7889999999999999999999998888877 988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccC-CCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      +|+.++  ++.++.|||+|++++|.|+.|...+...|.+++.++++.+ ++|.+|++.+++++++   +++++++++|||
T Consensus       100 ~al~~~--~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~---ktk~i~ln~P~N  174 (393)
T COG0436         100 EALFLA--FLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP---KTKAIILNSPNN  174 (393)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc---cceEEEEeCCCC
Confidence            999888  6777899999999999999999999999999999998544 4899999999999983   688999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      |||.+++++++++|+++|++||++||.||+|.++.|++.  .+.++.++.+..+++|+++||||.|+++|||+||+  ++
T Consensus       175 PTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~--~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~--v~  250 (393)
T COG0436         175 PTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGA--EHPSILELAGARDRTITINSFSKTYGMTGWRIGWV--VG  250 (393)
T ss_pred             CcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCC--CcCCHhhcCCCcceEEEEecccccccccccceeEe--ec
Confidence            999999999999999999999999999999999999852  24455555444589999999999999999999999  77


Q ss_pred             CChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccccc
Q 017967          321 SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQR  361 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~  361 (363)
                      ++++    +++.+.++++...+|++.++|.++..+|+..++
T Consensus       251 ~~~~----l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~  287 (393)
T COG0436         251 PPEE----LIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS  287 (393)
T ss_pred             ChHH----HHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc
Confidence            7666    777777888888999999999999999998753

>PLN00175 aminotransferase family protein; Provisional

Probab=100.00  E-value=4.5e-41  Score=327.39  Aligned_cols=275  Identities=17%  Similarity=0.192  Sum_probs=222.4

Q ss_pred             CCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHh
Q 017967           61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLF  140 (363)
Q Consensus        61 ~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~  140 (363)
                      ++...+.+.+..+......   ++.|+|+.|.|. .    .+++.+.+++.+.+.... .+|++..|.++||+++++++.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~---~~~i~l~~G~P~-~----~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~Lr~aia~~~~  105 (413)
T PLN00175         35 RLEKFKTTIFTQMSSLAIK---HGAINLGQGFPN-F----DGPDFVKEAAIQAIRDGK-NQYARGFGVPELNSAIAERFK  105 (413)
T ss_pred             HhhcCCCCHHHHHHHHhhc---CCeEecCCCCCC-C----CCCHHHHHHHHHHHhcCC-CCcCCCCCCHHHHHHHHHHHH
Confidence            4445555556555544332   379999999973 2    235667777766664433 689999999999999999998


Q ss_pred             cCCCCcccCC-cEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHH
Q 017967          141 GADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGM  219 (363)
Q Consensus       141 ~~~~~~~~~~-~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l  219 (363)
                      +.++..++++ +|++  |.|+++++.++  +..++.|||.|++++|+|+.|...++..|++++.++++++ ++++|++.+
T Consensus       106 ~~~g~~~~~~~~I~v--t~G~~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~~l  180 (413)
T PLN00175        106 KDTGLVVDPEKEVTV--TSGCTEAIAAT--ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPP-DFAVPEDEL  180 (413)
T ss_pred             HHhCCCCCCCCCEEE--eCCHHHHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcc-cCCCCHHHH
Confidence            8778888887 7988  99999998887  4556789999999999999999999999999999998643 488999999


Q ss_pred             HHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEE
Q 017967          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (363)
Q Consensus       220 ~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~  299 (363)
                      ++.+..   ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++   +..++..+....+++|++
T Consensus       181 ~~~~~~---~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~---~~~s~~~~~~~~~~vi~i  254 (413)
T PLN00175        181 KAAFTS---KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEG---DHISMASLPGMYERTVTM  254 (413)
T ss_pred             HHhcCc---CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC---cccChhhCCCCcCcEEEE
Confidence            998863   46778889999999999999999999999999999999999999998863   223444443335789999


Q ss_pred             EcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       300 ~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      +||||.|+++|+|+||+  +++ ++    +++.+.........+++.+.|.+++.+|+..+.|
T Consensus       255 ~SfSK~~~~~G~RiG~~--v~~-~~----l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~  310 (413)
T PLN00175        255 NSLGKTFSLTGWKIGWA--IAP-PH----LTWGVRQAHSFLTFATATPMQWAAVAALRAPESY  310 (413)
T ss_pred             ecchhhccCcchheeee--EeC-HH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHH
Confidence            99999999999999999  776 66    5666666666666789999999999998776554

>PLN02187 rooty/superroot1

Probab=100.00  E-value=8.8e-41  Score=329.00  Aligned_cols=270  Identities=14%  Similarity=0.154  Sum_probs=214.1

Q ss_pred             CCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccc
Q 017967           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (363)
Q Consensus        80 ~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (363)
                      ....++|+|++|.|. ..+.+.+++.+.+++.+.+..+....|.+..|.++||+++|+++...++..+++++|++  |.|
T Consensus        63 ~~~~~vi~l~~Gdp~-~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~i--t~G  139 (462)
T PLN02187         63 DVNKTILPLGHGDPS-VYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFL--TAG  139 (462)
T ss_pred             CCCCCeEECCCCCCC-CCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEE--eCC
Confidence            334589999999862 22223345667777776665444478999999999999999999887788889999988  999


Q ss_pred             hhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCC
Q 017967          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (363)
Q Consensus       160 gt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~  239 (363)
                      +++++.++.  ..++.|||.|++++|+|+.|...++..|++++.+++.+++++++|++.|+++++   +++++++++|||
T Consensus       140 ~~~al~~~~--~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~---~~~~~v~i~nP~  214 (462)
T PLN02187        140 CNQGIEIVF--ESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD---ENTVAMVVINPN  214 (462)
T ss_pred             HHHHHHHHH--HHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcC---CCcEEEEEeCCC
Confidence            999999984  445689999999999999999999999999999998655679999999998876   356788889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEe
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      ||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+ ....++|+++||||.|++||+|+||+  +
T Consensus       215 NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~--~~~s~~~~-~~~~~vi~l~SfSK~f~~pGlRiG~~--v  289 (462)
T PLN02187        215 NPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN--PFVSMGKF-ASIVPVLTLAGISKGWVVPGWKIGWI--A  289 (462)
T ss_pred             CCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC--CceeHHHh-ccCCcEEEEecchhhcCCccceeEEE--E
Confidence            9999999999999999999999999999999999988642  23344444 22357999999999999999999999  7


Q ss_pred             eCChhHHHHHHHHHHhhhcccc--CCCchHHHHHHhccccc-cccC
Q 017967          320 CSSSDLAARVKSQLKRLARPMY--SNPPPMLLGIQLSSMNG-KQRW  362 (363)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~--~~~s~~~q~~~~~~l~~-~~~w  362 (363)
                      +++++.+..+++.+..+.....  .+++.+.|.++..+|+. .++|
T Consensus       290 ~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~  335 (462)
T PLN02187        290 LNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNF  335 (462)
T ss_pred             ecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHH
Confidence            7655422223345554444332  25689999999998864 3344

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=1.3e-40  Score=323.88  Aligned_cols=275  Identities=16%  Similarity=0.175  Sum_probs=215.6

Q ss_pred             hhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC
Q 017967           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (363)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~  149 (363)
                      +..+.+.+..+..+++|+|++|.|.. .+...+++.+.+++.+........+|.+..|.++||+++|+++.+.++..+++
T Consensus        19 ~~~~~~~~~~~~~~~~i~l~~G~p~~-~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~   97 (409)
T PLN00143         19 VKFLKENFNEDDHRLAISFGFGDPSC-FECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSP   97 (409)
T ss_pred             HHHHHHhcccCCCCceeeCCCCCCCC-CCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCH
Confidence            44444455566677999999999731 12223466777777666544333679999999999999999998888888899


Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      ++|++  |+|+++++.++  +..++.+||.|++++|+|+.|...++..|++++.+++.+++++.+|++.|+++++   ++
T Consensus        98 ~~I~i--t~G~~~al~~~--~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~  170 (409)
T PLN00143         98 DDVYL--TLGCKHAAEII--IKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIAD---EN  170 (409)
T ss_pred             hhEEE--ecChHHHHHHH--HHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcc---cC
Confidence            99988  99999999998  4445789999999999999999999999999999998655678899999998875   34


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      +++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++.  ...++..+ +..+++++++||||.|++|
T Consensus       171 ~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~f~~p  247 (409)
T PLN00143        171 TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK--PFVPMGLF-ASIVPVITLGSISKRWMIP  247 (409)
T ss_pred             CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCC--CCcchhhh-cccCcEEEEccchhhcCCC
Confidence            66777899999999999999999999999999999999999999988642  12233333 4446899999999999999


Q ss_pred             cccceEEEEeeCCh-hHHH--HHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          310 AERIGAMNVVCSSS-DLAA--RVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       310 G~RvG~i~~v~~~~-~~~~--~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |+|+||+  +++++ ..++  .+++.+...... ...++.+.|.++..+|++
T Consensus       248 GlRvG~~--v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~  296 (409)
T PLN00143        248 GWGLGWL--VTCDPSGLLQICEIADSIKKALNP-APFPPTFIQAAIPEILEK  296 (409)
T ss_pred             ccceEEE--EeeCchhhhhhHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhc
Confidence            9999999  77544 2222  123444444332 334588999999988864

>PLN02368 alanine transaminase

Probab=100.00  E-value=2.2e-40  Score=320.54  Aligned_cols=246  Identities=15%  Similarity=0.091  Sum_probs=199.2

Q ss_pred             ccHHHHHHHHHHHc-cCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh-CCCCE
Q 017967          102 VLDVVKKAENLMLE-RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAK  179 (363)
Q Consensus       102 ~~~~v~~a~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~-~~gd~  179 (363)
                      +++.+.++...+.. .....+|++..|.++||+++|+|+.+.++..+++++|++  |.|+++++.++  +..++ .|||.
T Consensus        82 p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~--~~~l~~~pGd~  157 (407)
T PLN02368         82 PADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQI--LNAVIRGEKDG  157 (407)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--cccHHHHHHHH--HHHHcCCCCCE
Confidence            45666666655432 223478999999999999999999887788889999988  99999998887  34445 59999


Q ss_pred             EEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC---CCcEEEEEcCCCCCCCCCCCHHHHHHHHH
Q 017967          180 VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (363)
Q Consensus       180 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~i~~p~NPTG~~~s~~~~~~i~~  256 (363)
                      |++++|+|+.|...++..|.+++.++++++++|++|++.+++.+++..   .++++++++|||||||.+++.+++++|++
T Consensus       158 Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~  237 (407)
T PLN02368        158 VLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILK  237 (407)
T ss_pred             EEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHH
Confidence            999999999999999999999999999766679999999999987411   14678888999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh-------cCCeEEEEEcCcccc-ccccccceEEEEee--CChhHH
Q 017967          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-------RGMELLVAQSYSKNL-GLYAERIGAMNVVC--SSSDLA  326 (363)
Q Consensus       257 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-------~~~~vi~~~S~SK~~-~l~G~RvG~i~~v~--~~~~~~  326 (363)
                      +|+++|++||+||+|.++.|++. ....++..+..       ..+++|+++||||.| |++|||+||+  ++  .+++  
T Consensus       238 ~a~~~~~~II~DE~Y~~l~y~~~-~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~--i~~~~~~~--  312 (407)
T PLN02368        238 FCYQERLVLLGDEVYQQNIYQDE-RPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYF--EMTNIPPK--  312 (407)
T ss_pred             HHHHcCCEEEEEccccccccCCC-CCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEE--EEeCCCHH--
Confidence            99999999999999999998642 12334443321       235899999999998 8999999999  64  3466  


Q ss_pred             HHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          327 ARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       327 ~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                        +++.+.+... ...+++.++|.++..+|+..
T Consensus       313 --li~~~~~~~~-~~~~~~~~~Q~aa~~~l~~~  342 (407)
T PLN02368        313 --TVEEIYKVAS-IALSPNVSGQIFMGLMVNPP  342 (407)
T ss_pred             --HHHHHHHHhc-ccCCCCcHHHHHHHHHhCCC
Confidence              5666666533 34578999999999988754

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-40  Score=322.42  Aligned_cols=276  Identities=15%  Similarity=0.146  Sum_probs=217.3

Q ss_pred             CCCCchhhHHHHHhcC--CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcC
Q 017967           65 APPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA  142 (363)
Q Consensus        65 ~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~  142 (363)
                      ..++.+..+.......  ..++.++|+.|.|.     ..+++.+.+++.+.......+.|. ..|.++||+++|+++...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~-----~~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~   85 (399)
T PRK07681         12 FQSSIFSELGAYKKEKIAAGHKMIDLSIGNPD-----MPPADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNT   85 (399)
T ss_pred             cCccHHHHHHHHHHHhhhcCCCeEEeCCCCCC-----CCCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHH
Confidence            3344555554443221  23478999999863     123566777776665432225564 589999999999999888


Q ss_pred             CCCcccC-CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHH
Q 017967          143 DNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       143 ~~~~~~~-~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      ++..+++ ++|++  |+|+++++.++  +...+.+||.|++++|+|+.|...++..|++++.+|+++++++.+|++.+++
T Consensus        86 ~g~~~~~~~~I~i--t~G~~~al~~~--~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  161 (399)
T PRK07681         86 HNVILNADKEVLL--LMGSQDGLVHL--PMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPE  161 (399)
T ss_pred             hCCCCCCCCeEEE--CCCcHHHHHHH--HHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHH
Confidence            8888888 89988  99999999888  4445789999999999999999999999999999999655567889999998


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      .+.   +++++++++|||||||.+++.+++++|+++|+++|++||+||+|.+|.+++.  ...+...+....+++|+++|
T Consensus       162 ~~~---~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S  236 (399)
T PRK07681        162 EIA---DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGN--KPISFLSVPGAKEVGVEINS  236 (399)
T ss_pred             hcc---ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCC--CCCChhhCCCCcccEEEEee
Confidence            875   3567888899999999999999999999999999999999999999987642  22333333223468999999


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      |||.||++|+|+||+  +++ ++    +++.+.........+++.+.|.++..+|++.++|
T Consensus       237 ~SK~~~~~GlRiG~~--i~~-~~----l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~  290 (399)
T PRK07681        237 LSKSYSLAGSRIGYM--IGN-EE----IVRALTQFKSNTDYGVFLPIQKAACAALRNGAAF  290 (399)
T ss_pred             cccccCCccceeEEE--ecC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHH
Confidence            999999999999999  665 66    5666666655556689999999999998876554

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=100.00  E-value=8.4e-41  Score=308.20  Aligned_cols=277  Identities=16%  Similarity=0.130  Sum_probs=225.8

Q ss_pred             CCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHh
Q 017967           61 GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLF  140 (363)
Q Consensus        61 ~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~  140 (363)
                      ++....++.+-++.+..-+...+..  |+.|.+ |.    .+++.+.+++.++......++|++..|+++|++++++.+.
T Consensus        11 ~l~~~~~~vw~e~~~la~e~~~~~~--LgqGfp-~~----~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~s   83 (420)
T KOG0257|consen   11 NLSTSKPYVWTEINRLAAEHKVPNP--LGQGFP-DF----PPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYS   83 (420)
T ss_pred             cccccCCcHHHHHHHHHHhcCCCCc--ccCCCC-CC----CCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHH
Confidence            4455555566666655544433222  999997 32    3467777777777755445899999999999999999987


Q ss_pred             cCCCCcccC-CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecc------cCCCCC
Q 017967          141 GADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY------DPKTVG  213 (363)
Q Consensus       141 ~~~~~~~~~-~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~------~~~~~~  213 (363)
                      ..++....+ ++|++  |.|+++++..+  ++.++++||+|+|.+|.|+.|...++.+|.+.+.++..      ...+|.
T Consensus        84 e~~~~~~~~~~eVlV--T~GA~~ai~~~--~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~  159 (420)
T KOG0257|consen   84 EFYGGLLDPDDEVLV--TAGANEAISSA--LLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWT  159 (420)
T ss_pred             HHhccccCCcccEEE--ecCchHHHHHH--HHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCcccc
Confidence            755554444 56988  99999997765  77889999999999999999999999999999999986      456799


Q ss_pred             CCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC
Q 017967          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (363)
Q Consensus       214 ~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~  293 (363)
                      +|++.++.++++   +++++++|+||||||.+++++|+++|+++|++||+++|.||+|..+.+++.  .+..+.++.+..
T Consensus       160 ~D~~~le~~~t~---kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~--~h~r~aslPgm~  234 (420)
T KOG0257|consen  160 LDPEELESKITE---KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGN--KHIRIASLPGMY  234 (420)
T ss_pred             CChHHHHhhccC---CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCC--cceeeecCCchh
Confidence            999999999984   688999999999999999999999999999999999999999999999853  234444445667


Q ss_pred             CeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       294 ~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      ++++.++||||.||++|||+||+  +.+ +.    +.+.+..+.+.....++.+.|.+.+..+...+
T Consensus       235 ertitvgS~gKtf~~TGWrlGW~--igp-~~----L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~  294 (420)
T KOG0257|consen  235 ERTITVGSFGKTFGVTGWRLGWA--IGP-KH----LYSALFPVHQNFVFTCPTPIQEASAAAFALEL  294 (420)
T ss_pred             heEEEeccccceeeeeeeeeeee--ech-HH----hhhhHHHHhhccccccCcHHHHHHHHHHhhhh
Confidence            89999999999999999999999  774 65    78888888888888888888998877765543

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=100.00  E-value=3.4e-40  Score=319.18  Aligned_cols=253  Identities=14%  Similarity=0.113  Sum_probs=198.9

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      .++|+|+.|++.     ..+++.+.+++..........+|++..|.++||+++|+++.+.++..++++ +|++  |+|++
T Consensus        30 ~~~i~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~Gs~  102 (388)
T PRK07366         30 KELIDLSLGSSD-----LPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLP--LIGSQ  102 (388)
T ss_pred             CCeEEeCCCCCC-----CCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEE--CCCcH
Confidence            378999999862     122566777776655433346799999999999999999988888888888 6988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++  +..++.|||.|++++|+|+.|...++..|++++.+|++++.++.+|++.+++.+..   +++++++||||||
T Consensus       103 ~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~k~i~l~~p~NP  177 (388)
T PRK07366        103 EGTAHL--PLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLA---QARLMVLSYPHNP  177 (388)
T ss_pred             HHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcc---cceEEEEeCCCCC
Confidence            999988  44457799999999999999999999999999999996555677899999877652   4667888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|++++++||+||+|.+|.+++.. ...++..+....+++++++||||.||+||+|+||+  +++
T Consensus       178 TG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~--v~~  254 (388)
T PRK07366        178 TTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEV-EPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFA--IGN  254 (388)
T ss_pred             CCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCC-CCCChhhCCCCcccEEEEeecccccCCcchhheeh--cCC
Confidence            999999999999999999999999999999999886421 12234333233457899999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCC-chHHHHHHhcc
Q 017967          322 SSDLAARVKSQLKRLARPMYSNP-PPMLLGIQLSS  355 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~-s~~~q~~~~~~  355 (363)
                       ++    +++++.+.......+. +.+.|.+++.+
T Consensus       255 -~~----li~~l~~~~~~~~~~~~~~~~~~a~~~l  284 (388)
T PRK07366        255 -AQ----LIQALRQVKAVVDFNQYRGILNGAIAAL  284 (388)
T ss_pred             -HH----HHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence             66    5666665554444444 34445544443

>PRK08636 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-40  Score=320.90  Aligned_cols=283  Identities=13%  Similarity=0.136  Sum_probs=211.6

Q ss_pred             CCCCCCCchhhHHHHHhcC--CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHH
Q 017967           62 VTMAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELL  139 (363)
Q Consensus        62 v~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l  139 (363)
                      +...+.+.+..+....+..  ..++.++|+.|.|. .   + .++.+.++..+........+|.+..|.++||+++|+|+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~p~-~---~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l   84 (403)
T PRK08636         10 IKRLPKYVFAEVNELKMAARRAGEDIIDFSMGNPD-G---P-TPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWY   84 (403)
T ss_pred             HHhCCccHHHHHHHHHHHHHhcCCCEEEcCCcCCC-C---C-CCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHH
Confidence            3334444444444433221  22478999999863 1   1 23334444433332223378999999999999999999


Q ss_pred             hcCCCCcccCC-cEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHH
Q 017967          140 FGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (363)
Q Consensus       140 ~~~~~~~~~~~-~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (363)
                      ...++..++++ +|++  |+|+++++.++  +..++.|||.|++++|+|+.+...++..|+++++++++.++++++|++.
T Consensus        85 ~~~~~~~~~~~~~I~i--t~G~~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~  160 (403)
T PRK08636         85 KRKYNVDLDPETEVVA--TMGSKEGYVHL--VQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQ  160 (403)
T ss_pred             HHHhCCCCCCCCeEEE--CCChHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhh
Confidence            88778888887 7988  99999999888  4455789999999999999999999999999999998534468999885


Q ss_pred             H----HHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC
Q 017967          219 M----IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (363)
Q Consensus       219 l----~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  294 (363)
                      +    ++++++...++++++++|||||||.++|.+++++|+++|++++++||+||+|.++.+++.  ...++..+....+
T Consensus       161 l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~~~~~~~~~~~  238 (403)
T PRK08636        161 FFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGY--KTPSILEVEGAKD  238 (403)
T ss_pred             hhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCC--CCCChhcCCCccc
Confidence            5    555554334678888899999999999999999999999999999999999999987632  2234444322335


Q ss_pred             eEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       295 ~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ++++++||||.||+||+|+||+  +++ ++    +++.+.+.......+++.+.|.++..+++..++|
T Consensus       239 ~~i~~~S~SK~~~~~GlRiG~i--v~~-~~----li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~  299 (403)
T PRK08636        239 VAVESYTLSKSYNMAGWRVGFV--VGN-KK----LVGALKKIKSWLDYGMFTPIQVAATIALDGDQSC  299 (403)
T ss_pred             cEEEEEecccccCCccceeeee--eCC-HH----HHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHH
Confidence            7888999999999999999999  765 66    5555555554444577788899888776544444

>PRK08068 transaminase; Reviewed

Probab=100.00  E-value=3.8e-40  Score=318.96  Aligned_cols=259  Identities=16%  Similarity=0.171  Sum_probs=207.3

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      ++.|+|+.|.|. .    ..++.+.+++..........+|++..|.++||+++|+++...++..++++ +|++  |.|++
T Consensus        32 ~~~i~l~~~~p~-~----~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~i--t~G~~  104 (389)
T PRK08068         32 HDVINLGQGNPD-Q----PTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAI--LFGGK  104 (389)
T ss_pred             CCeEEecCCCCC-C----CCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cCCcH
Confidence            478999999762 1    22456677766655443446898899999999999999987777778888 7988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++  +..++.+||.|++++|+|+.|...++..|++++.+|++++.++.+|++++++.+..   +++++++||||||
T Consensus       105 ~~l~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~~P~NP  179 (389)
T PRK08068        105 AGLVEL--PQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAE---KAKLMYLNYPNNP  179 (389)
T ss_pred             HHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccc---cceEEEEECCCCC
Confidence            998887  44556799999999999999999999999999999996555678899999988863   4668888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|++++++||+||+|.++.+++.  ...+.....+..+++++++||||.||++|+|+||+  +++
T Consensus       180 TG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~--~~~  255 (389)
T PRK08068        180 TGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQ--KPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFA--VGN  255 (389)
T ss_pred             CCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCC--CCcChhhCCCccCCEEEEecchhccCCccceeEeE--ecC
Confidence            99999999999999999999999999999999887531  12232222234468999999999999999999999  654


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       ++    +++.+.+.......+++.+.|.+++..|...++|
T Consensus       256 -~~----l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  291 (389)
T PRK08068        256 -ES----VIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSC  291 (389)
T ss_pred             -HH----HHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHH
Confidence             76    5666666655556677777888888777654444

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=7.6e-40  Score=318.21  Aligned_cols=266  Identities=16%  Similarity=0.197  Sum_probs=212.0

Q ss_pred             HhcCCCC-CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC-CcEEE
Q 017967           77 FKADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVAT  154 (363)
Q Consensus        77 ~~~~~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~  154 (363)
                      ++.++-+ +.|+|+.|.+.    +..+++.+.+++.+.+......+|++..|.++||+++++++.+.++..+++ ++|++
T Consensus        32 ~~~~~~~~~~i~l~~g~~~----~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~i  107 (405)
T PRK06207         32 LRGEPLPGRPVDFSHGDVD----AHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELII  107 (405)
T ss_pred             hcCCcCCCCceecCCcCCC----CCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE
Confidence            3444433 78999999862    122345666666555533333679989999999999999998877877888 89988


Q ss_pred             EeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEeccc---CCCCCCCHHHHHHHHHcCCCCcE
Q 017967          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD---PKTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~---~~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                        |.|+++++.++  +..++.+||+|++++|+|+.+...++..|++++.++++.   ++++++|++.+++.++.   +++
T Consensus       108 --t~Ga~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~---~~k  180 (405)
T PRK06207        108 --TPGTQGALFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA---GVR  180 (405)
T ss_pred             --eCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh---cCe
Confidence              99999999888  444578999999999999999999999999999999752   23688999999998863   466


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccc
Q 017967          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~  311 (363)
                      +++++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+....+++++++||||.|+++|+
T Consensus       181 ~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~~~~~vi~i~SfSK~~~lpGl  258 (405)
T PRK06207        181 VFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGT--SYTHLRALPIDPENVITIMGPSKTESLSGY  258 (405)
T ss_pred             EEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCchhcCCCCcCcEEEEecchhhccCccc
Confidence            788899999999999999999999999999999999999999988642  122333332235799999999999999999


Q ss_pred             cceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          312 RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       312 RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      |+||+  +++ ++    +++.+.........+.+.++|.++..+|++.+.|
T Consensus       259 RiG~i--i~~-~~----l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~  302 (405)
T PRK06207        259 RLGVA--FGS-PA----IIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGW  302 (405)
T ss_pred             ceEEE--EcC-HH----HHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHH
Confidence            99999  665 66    5666666655566678889999999988764444

>PRK06348 aspartate aminotransferase; Provisional

Probab=100.00  E-value=7.4e-40  Score=316.39  Aligned_cols=272  Identities=16%  Similarity=0.175  Sum_probs=214.9

Q ss_pred             CCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCC
Q 017967           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (363)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (363)
                      ....+..+....+.  .++.++|+.|.+. .   + +++.+.++........ ..+|++..|.++||+++++++.+.++.
T Consensus        14 ~~~~~~~~~~~~~~--~~~~i~l~~g~p~-~---~-~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~   85 (384)
T PRK06348         14 EVNIMAEIATLAKK--FPDIIDLSLGDPD-L---I-TDESIINAAFEDAKKG-HTRYTDSGGDVELIEEIIKYYSKNYDL   85 (384)
T ss_pred             CccHHHHHHHHHHh--cCCcEEcCCCCCC-C---C-CCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCC
Confidence            33345455444432  2478999999863 1   1 2344544333322222 377999999999999999999887888


Q ss_pred             cccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc
Q 017967          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (363)
Q Consensus       146 ~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (363)
                      .+++++|++  |+|+++++.++  +..++.+||+|++++|+|.+|...++..|.+++.+++++++++++|++.+++.+++
T Consensus        86 ~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~  161 (384)
T PRK06348         86 SFKRNEIMA--TVGACHGMYLA--LQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITS  161 (384)
T ss_pred             CCChhhEEE--cCChHHHHHHH--HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCc
Confidence            889999988  99999999988  44457899999999999999999999999999999886555678999999998863


Q ss_pred             CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccc
Q 017967          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (363)
Q Consensus       226 ~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  305 (363)
                         +++++++++||||||.+++.+++++|+++|++++++||+||+|.++.+++   ...++..+....+++|+++||||.
T Consensus       162 ---~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~vi~~~SfSK~  235 (384)
T PRK06348        162 ---KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE---DFVPMATLAGMPERTITFGSFSKD  235 (384)
T ss_pred             ---CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC---CccchhhcCCCcCcEEEEecchhc
Confidence               45567778999999999999999999999999999999999999998763   122343443235789999999999


Q ss_pred             cccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       306 ~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ||+||+|+||+  +++ ++    +++.+.........+++.++|.++..+|...++|
T Consensus       236 ~~l~GlRiG~~--v~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  285 (384)
T PRK06348        236 FAMTGWRIGYV--IAP-DY----IIETAKIINEGICFSAPTISQRAAIYALKHRDTI  285 (384)
T ss_pred             cCCccccceee--ecC-HH----HHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHH
Confidence            99999999999  776 55    5666766666666688999999999888765554

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=100.00  E-value=1.9e-39  Score=314.74  Aligned_cols=273  Identities=17%  Similarity=0.135  Sum_probs=213.5

Q ss_pred             CCCCCCchhhHHHHHhc---CCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHH
Q 017967           63 TMAPPDPILGVSEAFKA---DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELL  139 (363)
Q Consensus        63 ~~~~~~~~~~~~~~~~~---~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l  139 (363)
                      ...+.+.+..+...++.   ....+.|+|+.|+|.     ..+++.+.+++.+.+. . ..+|++..|.++||+++|+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~-----~~~~~~~~~~~~~~~~-~-~~~Y~~~~G~~~lr~~ia~~~   78 (396)
T PRK09147          6 DRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPK-----HPTPAFIKDALAANLD-G-LASYPTTAGLPALREAIAAWL   78 (396)
T ss_pred             hcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCC-----CCCCHHHHHHHHHHhh-h-hcCCCCCCCCHHHHHHHHHHH
Confidence            34455566666665543   234589999999962     1235677777666543 2 377999999999999999999


Q ss_pred             hcCCCCc-ccCC-cEEEEeccchhHHHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCC
Q 017967          140 FGADNSV-LKEQ-RVATVQGLSGTGSLRLAAALIERYFP---GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL  214 (363)
Q Consensus       140 ~~~~~~~-~~~~-~i~~~~t~ggt~al~l~~~l~~~~~~---gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  214 (363)
                      ...++.. ++++ +|++  |.|+++++.++  +..++.|   ||.|++++|+|+.|..+++..|++++.+|+++++++++
T Consensus        79 ~~~~g~~~~~~~~~i~i--t~G~~~al~~~--~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~  154 (396)
T PRK09147         79 ERRYGLPALDPATQVLP--VNGSREALFAF--AQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAP  154 (396)
T ss_pred             HHHhCCCcCCccceEEE--CCChHHHHHHH--HHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCcc
Confidence            8877877 8885 8988  99999999888  4445678   89999999999999999999999999999965556899


Q ss_pred             CHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHH-HHH---
Q 017967          215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR-LFA---  290 (363)
Q Consensus       215 d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~---  290 (363)
                      |++.+++.+..   +++++++||||||||.+++.+++++|+++|++++++||+||+|.++.+++.. ...+.. ...   
T Consensus       155 d~~~l~~~~~~---~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~  230 (396)
T PRK09147        155 DFDAVPAEVWA---RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAA-PPLGLLEAAAELG  230 (396)
T ss_pred             CHHHHHHHHhh---ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCC-CCchhhhhccccC
Confidence            99999887763   4667778999999999999999999999999999999999999999876421 111111 111   


Q ss_pred             -hcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          291 -TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       291 -~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       +..+++|+++||||.|+++|+|+||+  +++ ++    +++++.+.......+++.+.|.++...+.
T Consensus       231 ~~~~~~vi~~~S~SK~~~~~GlRiG~~--~~~-~~----l~~~~~~~~~~~~~~~~~~~q~a~~~~~~  291 (396)
T PRK09147        231 RDDFKRLVVFHSLSKRSNVPGLRSGFV--AGD-AA----LLKKFLLYRTYHGCAMPPAVQAASIAAWN  291 (396)
T ss_pred             ccccccEEEEeccccccCCccceeeee--cCC-HH----HHHHHHHHhhhcccCCCHHHHHHHHHHhc
Confidence             12479999999999999999999999  766 66    55555555444455788899999776664

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=100.00  E-value=1e-39  Score=315.31  Aligned_cols=260  Identities=19%  Similarity=0.173  Sum_probs=209.0

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccch
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (363)
                      .+++++|+.|.+.     ..+++.+.+++.+........+|++..|.++||+++++|+...++..++++ +|++  |+|+
T Consensus        28 ~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~--t~G~  100 (383)
T TIGR03540        28 GVDVISLGIGDPD-----LPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLS--LIGS  100 (383)
T ss_pred             CCCeEEeCCCCCC-----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEE--CCCc
Confidence            3588999999862     223567777776655433347899999999999999999987777777776 6877  9999


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       161 t~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      ++++.++  +..++.+||.|+++.|+|+.+...++..|++++.+|+++++++.+|++.+++.+.+   ++++++++||||
T Consensus       101 ~~~l~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~---~~~~v~i~~P~N  175 (383)
T TIGR03540       101 KEGIAHI--PLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAK---KAKLMFINYPNN  175 (383)
T ss_pred             HHHHHHH--HHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccc---cceEEEEeCCCC
Confidence            9999988  44457899999999999999999999999999999986555677899999988763   466888889999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      |||.+++.+++++|+++|++++++||+||+|.++.+++.  ...++..+....+++++++||||.||++|+|+||+  ++
T Consensus       176 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~--i~  251 (383)
T TIGR03540       176 PTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGY--KAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMA--VG  251 (383)
T ss_pred             CcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCC--CCcCcccCCCcccCEEEEEecccccCCccceeeEE--eC
Confidence            999999999999999999999999999999999987532  22333332222367899999999999999999999  66


Q ss_pred             CChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          321 SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      + ++    +++.+.........+++.+.|.+++.+|++.++|
T Consensus       252 ~-~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  288 (383)
T TIGR03540       252 N-AD----LIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDV  288 (383)
T ss_pred             C-HH----HHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHH
Confidence            5 66    5555555555555678889999999988776665

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=2.7e-39  Score=314.87  Aligned_cols=260  Identities=18%  Similarity=0.153  Sum_probs=211.8

Q ss_pred             CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      ...++|+|++|+|. ......+++.+.+++.+.+......+|.+..|.++||+++++++...++..+++++|++  |.|+
T Consensus        29 ~~~~~i~l~~G~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~  105 (409)
T PLN02656         29 NGKRVISLGMGDPT-AYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFI--TSGC  105 (409)
T ss_pred             cCCeeeecCCCCCC-cCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEE--eCCh
Confidence            33589999999973 11223356788888777665444478999999999999999999887788888999988  9999


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       161 t~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      ++++.++.  ..++.+||+|++++|+|+.|...++..|++++.+++++++++.+|++.+++.++.   +++++++++|||
T Consensus       106 ~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~~P~N  180 (409)
T PLN02656        106 TQAIDVAL--SMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQ---NTVALVIINPGN  180 (409)
T ss_pred             HHHHHHHH--HHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhcc---CceEEEEECCCC
Confidence            99998884  4446899999999999999998899999999999986455678999999988863   466788899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      |||.+++.+++++|+++|++++++||+||+|.+|.+++.  ...+...+ +...++|+++||||.|++||+|+||+  ++
T Consensus       181 PtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~f~~pGlRiG~~--i~  255 (409)
T PLN02656        181 PCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSN--PFVPMGVF-GSIVPVLTLGSLSKRWIVPGWRLGWF--VT  255 (409)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CcccHHHh-cccCcEEEEcccchhccCcceeEEEE--EE
Confidence            999999999999999999999999999999999998642  22333333 44568999999999999999999999  77


Q ss_pred             CC-------hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          321 SS-------SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       321 ~~-------~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++       ++    +++.+.+.... +.+++.++|.++..+|++
T Consensus       256 ~~~~~~~~~~~----~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~  295 (409)
T PLN02656        256 TDPSGSFRDPK----IVERIKKYFDI-LGGPATFIQAAVPTILEQ  295 (409)
T ss_pred             eCcccccccHH----HHHHHHHHHhh-hcCCCHHHHHHHHHHHhc
Confidence            53       34    55555554332 457899999999999874

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=2.3e-39  Score=317.35  Aligned_cols=263  Identities=17%  Similarity=0.195  Sum_probs=209.6

Q ss_pred             HhcCCCC-CcEEeeccccCCCCCCccccHHHHHHHHHHHc-----------cCCCCCCCCCcchHHHHHHHHHHHhcCCC
Q 017967           77 FKADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-----------RGENKEYLPIEGLAAFNKVTAELLFGADN  144 (363)
Q Consensus        77 ~~~~~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-----------~~~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (363)
                      |++..+| ++|+|+++++      ....+.+.+.+.....           ......|.+..|.++||+++|+++.+.++
T Consensus        40 ~~~~~np~g~i~l~~aeN------~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~  113 (447)
T PLN02607         40 YDESHNPSGVIQMGLAEN------QVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRG  113 (447)
T ss_pred             CCcccCCCceEEEechhh------hhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcC
Confidence            4455666 6999999885      3445666655544321           11224477889999999999999987655


Q ss_pred             --CcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEEecccCCCCCCCHHHHHH
Q 017967          145 --SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       145 --~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                        .++++++|++  |+|++++++++  +..++.|||.|+|+.|+|+.|...+. +.|+++++|++++++++.+|++.+++
T Consensus       114 ~~~~v~p~~Ivi--t~G~t~al~~l--~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~  189 (447)
T PLN02607        114 GKARFDPDRIVL--TAGATAANELL--TFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEA  189 (447)
T ss_pred             CCCCcCHHHeEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHH
Confidence              3688999988  99999999998  44557899999999999999998887 68999999998655668899999999


Q ss_pred             HHHcC---CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh------c
Q 017967          222 DIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT------R  292 (363)
Q Consensus       222 ~l~~~---~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~------~  292 (363)
                      ++++.   ..++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++  .++.++.++..      .
T Consensus       190 a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~--~~f~S~~s~~~~~~~~~~  267 (447)
T PLN02607        190 AYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSA--SEFVSVAEIVEARGYKGV  267 (447)
T ss_pred             HHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCC--CCcccHHHHHhhcCCCCC
Confidence            88742   2356778889999999999999999999999999999999999999988864  23455555432      1


Q ss_pred             CCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       293 ~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      .+++++++||||.||++|+|+||+  ++.+++    +++.++..  ..+..+|.++|.+++.+|++.
T Consensus       268 ~~~v~vi~s~SK~fg~~GlRvG~i--vs~n~~----l~~~~~~~--~~~~~~s~~~q~~~~~~L~d~  326 (447)
T PLN02607        268 AERVHIVYSLSKDLGLPGFRVGTI--YSYNDK----VVTTARRM--SSFTLVSSQTQHLLASMLSDE  326 (447)
T ss_pred             cCcEEEEEcchhcCCCCcceEEEE--EEcCHH----HHHHHHHH--hhcCCCCHHHHHHHHHHhCCc
Confidence            468999999999999999999999  776666    55555544  234468999999999998864

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=3.2e-39  Score=315.71  Aligned_cols=263  Identities=17%  Similarity=0.165  Sum_probs=211.1

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      ..++|+|++|+|. .......++.+.+++.+.+.......|++..|.++||+++++++...++..+++++|++  |+|++
T Consensus        51 ~~~~i~l~~G~P~-~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~i--t~G~~  127 (430)
T PLN00145         51 PRPVLPLGHGDPS-AFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYL--TAGCA  127 (430)
T ss_pred             CCCeeeCCCCCCC-CCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEE--eCCHH
Confidence            3479999999873 22223345677777777665433357999999999999999999888888889999988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++++++..  .+..|||+|++++|+|+.|...+...|++++.+++..++++.+|++.+++.+++   ++++++++|||||
T Consensus       128 ~al~l~~~--~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~P~NP  202 (430)
T PLN00145        128 QAIEIIMS--VLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADE---NTVAMVIINPNNP  202 (430)
T ss_pred             HHHHHHHH--HhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCc---CceEEEEeCCCCC
Confidence            99999843  446799999999999999999999999999999976566789999999988763   5678888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++|++||+||+|.+|.+++.  ...++..+ +...++|+++||||.|++||||+||+  +++
T Consensus       203 tG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~~~pG~RlG~i--v~~  277 (430)
T PLN00145        203 CGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSK--PFVPMGVF-GEVAPVLTLGSISKRWVVPGWRLGWI--ATC  277 (430)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCC--Cccchhhh-cccCcEEEEeccccccCCCCeeEEEE--EEe
Confidence            99999999999999999999999999999999988642  23344333 34568999999999999999999999  664


Q ss_pred             Ch-hHHHH--HHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          322 SS-DLAAR--VKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       322 ~~-~~~~~--~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++ ..++.  +++.++... ....+++.+.|.++..+|+.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~  316 (430)
T PLN00145        278 DPNGILKETKVVDSIRNYL-NISTDPATFVQGAIPQIIAN  316 (430)
T ss_pred             cchhhhhhhHHHHHHHHHh-cccCCCCHHHHHHHHHHHhc
Confidence            33 22221  344455443 34557889999999888865

>PTZ00377 alanine aminotransferase; Provisional

Probab=100.00  E-value=1.7e-39  Score=322.23  Aligned_cols=264  Identities=19%  Similarity=0.106  Sum_probs=206.7

Q ss_pred             CCcEEeeccccCC---------------CCCCc---------cccHHHHHHHHHHHcc--CCCCCCCCCcchHHHHHHHH
Q 017967           83 EKKLNLGVGAYRT---------------EELQP---------YVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTA  136 (363)
Q Consensus        83 ~~~i~l~~g~~~~---------------~~~~~---------~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia  136 (363)
                      .++|+|++|+|.+               ...+.         ..+..+.++..+....  .....|++..|.++||+++|
T Consensus        46 ~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia  125 (481)
T PTZ00377         46 DSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVA  125 (481)
T ss_pred             ceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCccccccCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHH
Confidence            4899999999842               22211         1233445555544422  13367999999999999999


Q ss_pred             HHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCC
Q 017967          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (363)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  215 (363)
                      +++.+.++..+++++|++  |+|+++++.++.  ..++ .|||.|+++.|+|+.|...++..|.+++.+++++++++++|
T Consensus       126 ~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~~--~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d  201 (481)
T PTZ00377        126 AFIERRDGVPKDPSDIFL--TDGASSGIKLLL--QLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLD  201 (481)
T ss_pred             HHHHHhcCCCCChhhEEE--cCCHHHHHHHHH--HHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCC
Confidence            999888888899999988  999999999984  3446 69999999999999999999999999999999766678999


Q ss_pred             HHHHHHHHHcCC---CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH--
Q 017967          216 FEGMIADIKAAP---GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA--  290 (363)
Q Consensus       216 ~~~l~~~l~~~~---~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--  290 (363)
                      ++.|++.++...   .++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++. ....++..+.  
T Consensus       202 ~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~-~~~~s~~~~~~~  280 (481)
T PTZ00377        202 QEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGE-KPFISFRKVLLE  280 (481)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCC-CCcccHHHHHHh
Confidence            999999987411   1466777789999999999999999999999999999999999999988431 1233433321  


Q ss_pred             --hc---CCeEEEEEcCccc-cccccccceEEEEee--CChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          291 --TR---GMELLVAQSYSKN-LGLYAERIGAMNVVC--SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       291 --~~---~~~vi~~~S~SK~-~~l~G~RvG~i~~v~--~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                        ..   ..++|+++||||. ++++|||+||+  ++  .+++    +++++.+... ...+++.++|.++..+|+.
T Consensus       281 l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~--~~~~~p~~----li~~l~~~~~-~~~~~~~~~Q~a~~~~l~~  349 (481)
T PTZ00377        281 LPAEYNTDVELVSFHSTSKGIIGECGRRGGYF--ELTNIPPE----VREQIYKLAS-INLCSNVVGQLMTGLMCNP  349 (481)
T ss_pred             hcccccCCeEEEEEecCCcccccCCcCceEEE--EEeCCCHH----HHHHHHHHhh-eecCCChHHHHHHHHHhCC
Confidence              11   2379999999997 69999999999  65  2466    5666666553 3457899999999998864

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=2.8e-39  Score=318.84  Aligned_cols=263  Identities=16%  Similarity=0.164  Sum_probs=206.5

Q ss_pred             HhcCCCC-CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-----------CCCCCCCCCcchHHHHHHHHHHHhcCCC
Q 017967           77 FKADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-----------GENKEYLPIEGLAAFNKVTAELLFGADN  144 (363)
Q Consensus        77 ~~~~~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (363)
                      |+...+| +.|+|+++++      +++.+.+.+.+......           .....|++..|.++||+++|+|+.+.++
T Consensus        31 y~~~~~p~g~i~L~~~En------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~  104 (468)
T PLN02450         31 YDEIKNPSGIIQMGLAEN------QLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRG  104 (468)
T ss_pred             CCcccCCCeeEEeehhHh------HhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhC
Confidence            3444555 7999999986      34445665555443210           1224588889999999999999987655


Q ss_pred             C--cccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEEecccCCCCCCCHHHHHH
Q 017967          145 S--VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       145 ~--~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      .  .+++++|++  |+|+++++.++  +..++.|||.|++++|+|+.|...+. ..|++++++++++++++.+|++.+++
T Consensus       105 ~~~~v~~~~Iii--t~Ga~~al~~l--~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~  180 (468)
T PLN02450        105 NKVTFDPNKLVL--TAGATSANETL--MFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEE  180 (468)
T ss_pred             CCCCcChHHeEE--ccChHHHHHHH--HHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHH
Confidence            3  478999988  99999999888  45557899999999999999998888 68999999998655678889999999


Q ss_pred             HHHcC---CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh-------
Q 017967          222 DIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-------  291 (363)
Q Consensus       222 ~l~~~---~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-------  291 (363)
                      ++.+.   ..+++++++||||||||.+++.+++++|+++|++++++||+||+|.++.+++.  ++.+......       
T Consensus       181 ~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~--~~~s~l~~~~~~~~~~~  258 (468)
T PLN02450        181 AYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSP--GFVSVMEVLKDRKLENT  258 (468)
T ss_pred             HHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCC--CcccHHHHhhhcccccC
Confidence            88642   23566778899999999999999999999999999999999999999887642  2334333321       


Q ss_pred             -cCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          292 -RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       292 -~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                       ..+++++++||||.||++|+|+||+  +++++.    +++.+.+..  .+.++|.++|.+++.+|++.
T Consensus       259 ~~~~~vi~l~S~SK~~~l~GlRiG~l--i~~~~~----l~~~~~~~~--~~~~~s~~~Q~a~~~~L~~~  319 (468)
T PLN02450        259 DVSNRVHIVYSLSKDLGLPGFRVGAI--YSNDEM----VVSAATKMS--SFGLVSSQTQYLLSALLSDK  319 (468)
T ss_pred             CCCCcEEEEEeccccCCCCCccEEEE--EECCHH----HHHHHHHHh--hcCCCCHHHHHHHHHHhCCc
Confidence             2478999999999999999999999  887665    444444442  33467999999999998764

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=100.00  E-value=2e-39  Score=313.47  Aligned_cols=259  Identities=20%  Similarity=0.183  Sum_probs=207.5

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      ++.++|+.|.+.     ..+++.+.+++.+........+|++..|.++||+++++|+...++..++++ +|++  |.|++
T Consensus        31 ~~~i~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~--t~G~~  103 (385)
T PRK09276         31 VDVISLGIGDPD-----LPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVIS--LIGSK  103 (385)
T ss_pred             CCEEEecCCCCC-----CCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--ccCcH
Confidence            478999999862     223567777777665433336798899999999999999987777777776 5877  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++.  ..++.|||.|++++|+|+.|...++..|++++.+++++++++.+|++.+++.+.   +++++++++|||||
T Consensus       104 ~~i~~~~--~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~l~~p~NP  178 (385)
T PRK09276        104 EGIAHIP--LAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA---KKAKLMFINYPNNP  178 (385)
T ss_pred             HHHHHHH--HHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCCCC
Confidence            9999884  344679999999999999999999999999999998655567789999988776   34667888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|++++++||+||+|.++.+++.  ...++..+....+++++++||||.||++|+|+||+  +++
T Consensus       179 tG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~--i~~  254 (385)
T PRK09276        179 TGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGY--KPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFA--VGN  254 (385)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCC--CCCChhccCCCcCCEEEEecchhhcCCcchhheee--eCC
Confidence            99999999999999999999999999999999987532  12333333222467899999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       ++    +++.+.+.......+++.+.|.++..+|+..+.|
T Consensus       255 -~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  290 (385)
T PRK09276        255 -AD----LIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEV  290 (385)
T ss_pred             -HH----HHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHH
Confidence             66    5555655555555677888999998888765555

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=4e-39  Score=319.03  Aligned_cols=275  Identities=16%  Similarity=0.151  Sum_probs=209.8

Q ss_pred             CCCCchhhHHHHHh-----cCCCC-CcEEeeccccCCCCCCccccHHHHHHHHHHH-----------ccCCCCCCCCCcc
Q 017967           65 APPDPILGVSEAFK-----ADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLML-----------ERGENKEYLPIEG  127 (363)
Q Consensus        65 ~~~~~~~~~~~~~~-----~~~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-----------~~~~~~~Y~~~~G  127 (363)
                      .+.++.+..-+.|+     ...+| ++|+|+.+++      ++..+.+.+.+.+..           .......|.+..|
T Consensus        22 ~~~~~~~~~~~~~~~~~y~~~~np~g~i~l~~aEN------~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G   95 (496)
T PLN02376         22 GENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAEN------QLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHG   95 (496)
T ss_pred             CCCCchHHHHHHHhCCCCCcccCCCceEEeecchh------hhhHHHHHHHHHhCchhhccccccccccchhhccCCCCC
Confidence            34444444444443     33455 7999998875      333334333332211           0112246888999


Q ss_pred             hHHHHHHHHHHHhcCCC--CcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEE
Q 017967          128 LAAFNKVTAELLFGADN--SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEY  204 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~--~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v  204 (363)
                      .++||+++|+|+.+.++  ..+++++|++  |+|++++++++  +..++.|||.|++++|+|+.|...++ ..|++++++
T Consensus        96 ~~~LR~aiA~~l~~~~g~~v~v~pe~Ivi--t~Ga~~al~~l--~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v  171 (496)
T PLN02376         96 LKKFRQAIAHFMGKARGGKVTFDPERVVM--SGGATGANETI--MFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPV  171 (496)
T ss_pred             cHHHHHHHHHHHHHHhCCCCcCChhhEEE--ccchHHHHHHH--HHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEE
Confidence            99999999999987766  5688999988  99999999998  45567899999999999999999887 689999999


Q ss_pred             ecccCCCCCCCHHHHHHHHHcC---CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCC
Q 017967          205 RYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (363)
Q Consensus       205 ~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~  281 (363)
                      +++.++++++|++.+++++...   ..++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++.  
T Consensus       172 ~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~--  249 (496)
T PLN02376        172 PCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG--  249 (496)
T ss_pred             eCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC--
Confidence            9965567899999998775431   23567788899999999999999999999999999999999999999988642  


Q ss_pred             chhHHHHHHhc-------CCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhc
Q 017967          282 DASSVRLFATR-------GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLS  354 (363)
Q Consensus       282 ~~~~~~~~~~~-------~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~  354 (363)
                      ++.++..+...       .+++++++||||.||+||+|+||+  +++++.    +++.++...  .+..+|.+.|.+++.
T Consensus       250 ~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~l--i~~~~~----l~~~~~~~~--~~~~vs~~~Q~a~~~  321 (496)
T PLN02376        250 DFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIV--YSFNDS----VVSCARKMS--SFGLVSSQTQLMLAS  321 (496)
T ss_pred             CcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEE--EECCHH----HHHHHHHHh--hcCCCCHHHHHHHHH
Confidence            34455555321       146788999999999999999999  777666    444444433  344689999999999


Q ss_pred             ccccc
Q 017967          355 SMNGK  359 (363)
Q Consensus       355 ~l~~~  359 (363)
                      +|++.
T Consensus       322 ~L~d~  326 (496)
T PLN02376        322 MLSDD  326 (496)
T ss_pred             HhCCh
Confidence            98754

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=100.00  E-value=5.2e-39  Score=321.31  Aligned_cols=281  Identities=20%  Similarity=0.151  Sum_probs=216.0

Q ss_pred             CCCCCCCCchhhHHHHH---hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHH
Q 017967           61 GVTMAPPDPILGVSEAF---KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (363)
Q Consensus        61 ~v~~~~~~~~~~~~~~~---~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (363)
                      ++....++.+..+....   +.. ..++|+|++|.|.. .+. ..++.+.+++.+.+..  ..+|++..|.++||+++|+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~i~l~~G~p~~-~~~-~~p~~~~~~~~~~~~~--~~~Y~~~~G~~~lReaia~  196 (517)
T PRK13355        122 KLDNVLYDVRGPVVDEANRMEAA-GTHILKLNIGNPAP-FGF-RTPDEVVYDMAQQLTD--TEGYSDSKGLFSARKAIMQ  196 (517)
T ss_pred             HhhccCccHHHHHHHHHHHHHHc-CCCeEEecCcCCCc-CCC-CCCHHHHHHHHHHhhc--CCCCCCCcChHHHHHHHHH
Confidence            44444555444443333   333 24899999998732 122 2345566665554432  2579999999999999999


Q ss_pred             HHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHH
Q 017967          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (363)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (363)
                      ++...++..+++++|++  |+|+++++.++  +..++.+||.|++++|+|+.|...++..|++++.++++++.+|.+|++
T Consensus       197 ~~~~~~~~~~~~~~I~i--t~G~~eal~~~--~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~  272 (517)
T PRK13355        197 YAQLKGLPNVDVDDIYT--GNGVSELINLS--MSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDID  272 (517)
T ss_pred             HHHhcCCCCCChhHEEE--eCcHHHHHHHH--HHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHH
Confidence            99776666688999988  99999999888  444578999999999999999999999999999999876667899999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEE
Q 017967          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (363)
Q Consensus       218 ~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi  297 (363)
                      .+++++.   +++++++++|||||||.+++.+++++|+++|++|+++||+||+|.+|.+++.  ...++..+ .....++
T Consensus       273 ~l~~~~~---~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~--~~~s~~~~-~~~~~vi  346 (517)
T PRK13355        273 DIRSKIT---SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGL--EHTSIASL-APDLFCV  346 (517)
T ss_pred             HHHHhcC---cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCC--CcccHHHh-CCCCeEE
Confidence            9999886   3567888899999999999999999999999999999999999999998642  23344443 2233578


Q ss_pred             EEEcCccccccccccceEEEEeeC-ChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          298 VAQSYSKNLGLYAERIGAMNVVCS-SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       298 ~~~S~SK~~~l~G~RvG~i~~v~~-~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      +++||||.|+++|||+||+  +++ +++.++.+++.+.... ....+++.++|.++..+|...
T Consensus       347 ~~~S~SK~~~~~G~RiG~~--i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~aL~~~  406 (517)
T PRK13355        347 TFSGLSKSHMIAGYRIGWM--ILSGNKRIAKDYIEGLNMLA-NMRLCSNVPAQSIVQTALGGH  406 (517)
T ss_pred             EEecchhhccCcccceEEE--EeeCchhhHHHHHHHHHHHh-cCcCCcChHHHHHHHHHhcCC
Confidence            8899999999999999999  653 3444445666665443 344578899999998888653

>PRK06855 aminotransferase; Validated

Probab=100.00  E-value=7.7e-39  Score=313.54  Aligned_cols=262  Identities=15%  Similarity=0.098  Sum_probs=205.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ++++|++|+|. ... ..+++.+.+++.+.......++|.+..|.++||+++++|+...++..+++++|++  |+|++++
T Consensus        33 ~~~~~~~G~p~-~~~-~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~i--t~G~~~a  108 (433)
T PRK06855         33 KITWENIGDPI-AKG-EKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIF--FNGLGDA  108 (433)
T ss_pred             cccccccCCCc-ccC-CCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEE--cCcHHHH
Confidence            68999999873 111 2345667777666654334478999999999999999999888888899999988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      +.++.   .++.|||.|++++|+|+.|.... ...|++++.+++++++++++|++.|++.++..+ ++++++++||||||
T Consensus       109 l~~~~---~l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~-~~~~i~l~~P~NPT  184 (433)
T PRK06855        109 IAKIY---GLLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNP-SIAGILLINPDNPT  184 (433)
T ss_pred             HHHHH---HhcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCC-CceEEEEECCCCCC
Confidence            88873   35789999999999999987553 356889999998655678899999999987422 35677788999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+.. ..++|+++||||.|++||+|+||+  ++++
T Consensus       185 G~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~--~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG~i--i~p~  259 (433)
T PRK06855        185 GAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK--KTVPLSEVIG-DVPGIALKGISKELPWPGSRCGWI--EVYN  259 (433)
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCCHHHHcC-cCCeEEEecCccccCCCcceEEEE--EEeC
Confidence            9999999999999999999999999999999988642  2344444432 246899999999999999999999  7642


Q ss_pred             ---hhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          323 ---SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       323 ---~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                         +..+..+.+.+..... ...+++.+.|.++..+|++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~  298 (433)
T PRK06855        260 ADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHP  298 (433)
T ss_pred             CchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCC
Confidence               2223334454544333 34468899999999998765

>PRK09148 aminotransferase; Validated

Probab=100.00  E-value=4.2e-39  Score=313.05  Aligned_cols=259  Identities=15%  Similarity=0.134  Sum_probs=203.6

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      ++.|+|+.|.|.     ..+++.+.+++.+........+|++..|.++||+++|+++...++..++++ +|++  |.|++
T Consensus        30 ~~~i~l~~~~p~-----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~G~~  102 (405)
T PRK09148         30 ADIIDLGMGNPD-----LPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVA--TLGSK  102 (405)
T ss_pred             CCeEEcCCCCCC-----CCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cCChH
Confidence            478999998862     223556666666655333347899999999999999999977667777887 8988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.+++  ..++.+||+|++++|+|+.|...++..|++++.++++++..+   ++.+++.++...++++++++++||||
T Consensus       103 ~al~~~~--~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~---~~~l~~~~~~~~~~~~~v~l~~P~NP  177 (405)
T PRK09148        103 EGFANMA--QAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEF---FPALERAVRHSIPKPIALIVNYPSNP  177 (405)
T ss_pred             HHHHHHH--HHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCC---ccCHHHHHhhccccceEEEEeCCCCC
Confidence            9999884  445679999999999999999999999999999998543333   45555555533345778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|++++++||+||+|.++.+++.  ...++..+....+++++++||||.||+||+|+||+  +++
T Consensus       178 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~--~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~--v~~  253 (405)
T PRK09148        178 TAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGN--PPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFA--VGN  253 (405)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCC--CCCChhhCCCccCcEEEEeccccccCCcchheeee--eCC
Confidence            99999999999999999999999999999999987531  22233333222357889999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       ++    +++.+.+.......+++.++|.++..+|+..++|
T Consensus       254 -~~----~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~  289 (405)
T PRK09148        254 -ER----LIAALTRVKSYLDYGAFTPIQVAATAALNGPQDC  289 (405)
T ss_pred             -HH----HHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHH
Confidence             66    5666666655555678899999999998765554

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=100.00  E-value=1e-38  Score=310.12  Aligned_cols=276  Identities=14%  Similarity=0.182  Sum_probs=217.2

Q ss_pred             CchhhHHHHHhcCCC--CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCC
Q 017967           68 DPILGVSEAFKADTD--EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (363)
Q Consensus        68 ~~~~~~~~~~~~~~~--~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (363)
                      +++..+.+.++.+.+  .+.++|++|.|. ..+...+.+.+.+++.+........+|.+..|.++||+++++++... +.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~   91 (401)
T TIGR01264        14 NPIRAIVDNMKVKPNPEKPMIKLSIGDPT-VFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DG   91 (401)
T ss_pred             hHHHHHHHHHHhhhhcCCCeeecCCCCCC-CcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CC
Confidence            345566666666544  367999999973 22223456778888777665443367999999999999999998764 55


Q ss_pred             cccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc
Q 017967          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (363)
Q Consensus       146 ~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (363)
                      .+++++|++  |+|+++++.++.  ..++.+||+|++++|+|..|...++..|++++.++++.++++++|++.+++.++.
T Consensus        92 ~~~~~~i~~--t~G~~~al~~~~--~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~  167 (401)
T TIGR01264        92 PIEADDVVL--CSGCSHAIEMCI--AALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE  167 (401)
T ss_pred             CCCHHHEEE--CcChHHHHHHHH--HHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhcc
Confidence            688999988  999999998884  3446799999999999999999999999999999986555789999999988763


Q ss_pred             CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccc
Q 017967          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (363)
Q Consensus       226 ~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  305 (363)
                         ++.+++++|||||||.+++.+++++|+++|+++|++||+||+|.+|.+++.  ...++..+ ....++|+++||||.
T Consensus       168 ---~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~SfSK~  241 (401)
T TIGR01264       168 ---KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGA--TFEPLASL-SSTVPILSCGGLAKR  241 (401)
T ss_pred             ---CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCc--ccccHHHc-CCCCcEEEEccCccc
Confidence               356778899999999999999999999999999999999999999987642  23344444 223369999999999


Q ss_pred             cccccccceEEEEeeCCh-hHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          306 LGLYAERIGAMNVVCSSS-DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       306 ~~l~G~RvG~i~~v~~~~-~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |+++|+|+||+  +++++ +.+..+++.+..+.. ...+++.++|.++..+|.+
T Consensus       242 ~~~~GlRiG~i--v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~  292 (401)
T TIGR01264       242 WLVPGWRLGWI--IIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLR  292 (401)
T ss_pred             CCCccceEEEE--EecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHh
Confidence            99999999999  77642 233345666655543 3457889999999888864

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=6.4e-39  Score=310.21  Aligned_cols=271  Identities=18%  Similarity=0.212  Sum_probs=218.7

Q ss_pred             CCCCCCCchhhHHHHHhcC--CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHH
Q 017967           62 VTMAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELL  139 (363)
Q Consensus        62 v~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l  139 (363)
                      +....+.++.++.......  ..+++++|+.|.+.     ..+++.+.+++.+.+.... .+|.+..|.+++|+++|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~-----~~~~~~v~~a~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~   82 (387)
T PRK08960          9 SRDIEPFHVMALLARANELEAAGHDVIHLEIGEPD-----FTTAEPIVAAGQAALAAGH-TRYTAARGLPALREAIAGFY   82 (387)
T ss_pred             HHhCCchHHHHHHHHHHHHHhcCCCeEEeCCCCCC-----CCCCHHHHHHHHHHHhcCC-CccCCCCCCHHHHHHHHHHH
Confidence            3344556666666544321  23478999999862     2246778888777664333 67999999999999999999


Q ss_pred             hcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHH
Q 017967          140 FGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGM  219 (363)
Q Consensus       140 ~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l  219 (363)
                      ...++..+++++|++  |.|+++++.++.  ..++.+||+|++++|+|+.+...++..|.+++.++++++.++.+|++.+
T Consensus        83 ~~~~g~~~~~~~i~i--t~G~~~al~~~~--~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l  158 (387)
T PRK08960         83 AQRYGVDVDPERILV--TPGGSGALLLAS--SLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALV  158 (387)
T ss_pred             HHHhCCCCChhhEEE--ccCcHHHHHHHH--HHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHH
Confidence            877788888999988  999999999984  3446899999999999999999999999999999986555678999999


Q ss_pred             HHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEE
Q 017967          220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (363)
Q Consensus       220 ~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~  299 (363)
                      ++.+++   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.   ..+.   ....++++++
T Consensus       159 ~~~~~~---~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~---~~~~---~~~~~~vi~~  229 (387)
T PRK08960        159 ERHWNA---DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD---AASV---LEVDDDAFVL  229 (387)
T ss_pred             HHHhCc---cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC---CCCh---hhccCCEEEE
Confidence            998763   466778899999999999999999999999999999999999999987531   2232   2345789999


Q ss_pred             EcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       300 ~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +||||.||++|+|+||+  +++ ++    +++.++++......+++.+.|.++..+|.+
T Consensus       230 ~S~SK~~g~~GlRiG~~--~~~-~~----~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~  281 (387)
T PRK08960        230 NSFSKYFGMTGWRLGWL--VAP-PA----AVPELEKLAQNLYISASTPAQHAALACFEP  281 (387)
T ss_pred             eecccccCCcccEEEEE--EcC-HH----HHHHHHHHHhhhccCCCHHHHHHHHHHhhc
Confidence            99999999999999999  776 55    566666666666678899999999888754

>PRK07682 hypothetical protein; Validated

Probab=100.00  E-value=6.5e-39  Score=309.22  Aligned_cols=257  Identities=18%  Similarity=0.171  Sum_probs=208.6

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      ++.|+|+.|+|. ..    +++.+.+++.+..... ..+|.+..|.++||+++|+++.+.++..++++ +|++  |+|++
T Consensus        20 ~~~i~l~~~~~~-~~----~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~~   91 (378)
T PRK07682         20 EGVISLGVGEPD-FV----TPWNVREASIRSLEQG-YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIV--TVGAS   91 (378)
T ss_pred             CCeEEeCCCCCC-CC----CCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCChH
Confidence            378999999973 11    2445666665555433 36798899999999999999987777777775 7988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++  +..++.|||.|++++|+|+.|...++..|.+++.++++.++++++|++.+++++.+   +++++++++||||
T Consensus        92 ~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~~~~p~NP  166 (378)
T PRK07682         92 QALDVA--MRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITA---KTKAILLCSPNNP  166 (378)
T ss_pred             HHHHHH--HHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCc---ccEEEEEECCCCC
Confidence            999988  44457799999999999999999999999999999985445689999999998863   4667778999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++++++|+||+|.++.+++.   ..++..+.+..+++++++||||.||++|+|+||+  +++
T Consensus       167 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~--~~~  241 (378)
T PRK07682        167 TGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA---YTSFASIKGMRERTILISGFSKGFAMTGWRLGFI--AAP  241 (378)
T ss_pred             cCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC---CCChhhcccccCCEEEEecCcccccChhhhhhhh--hcC
Confidence            99999999999999999999999999999999998641   2233344334578999999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       ++    +++.+.........+++.+.|.++..+|++.+.|
T Consensus       242 -~~----~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~  277 (378)
T PRK07682        242 -VY----FSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDD  277 (378)
T ss_pred             -HH----HHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHH
Confidence             66    5555555544555688999999999998776554

>PRK06290 aspartate aminotransferase; Provisional

Probab=100.00  E-value=9.9e-39  Score=310.40  Aligned_cols=253  Identities=17%  Similarity=0.158  Sum_probs=204.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCc-ccCC-cEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV-LKEQ-RVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~-~~~~-~i~~~~t~ggt  161 (363)
                      ++|+|++|+|. .    .+++.+.+++...........|+ ..|.++||+++|+++...++.. ++++ +|++  |+|++
T Consensus        45 ~~i~L~~g~p~-~----~~~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~i--t~Gs~  116 (410)
T PRK06290         45 ELIDMGVGEPD-E----MADESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIH--SIGSK  116 (410)
T ss_pred             CeEEcCCCCCC-C----CCCHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEE--ccCHH
Confidence            68999999973 1    13456666665544322335685 4899999999999998877777 8886 7988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++  +..++.+||.|+++.|+|+.|...++..|++++.++++++.++.+|++.+++.+..   ++++++++|||||
T Consensus       117 ~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~---~~k~i~l~nP~NP  191 (410)
T PRK06290        117 PALAML--PSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKE---KAKLLYLNYPNNP  191 (410)
T ss_pred             HHHHHH--HHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcc---cceEEEEECCCCC
Confidence            999888  34456799999999999999999999999999999997555678899999988863   4678888899999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|++++++||+||+|.++.+++.   ..++..+.+..+++|+++||||.||++|+|+||+  +++
T Consensus       192 TG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~---~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~i--i~~  266 (410)
T PRK06290        192 TGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK---PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFV--VGN  266 (410)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC---CcChhcCCCccccEEEEeechhhcCCchhheEeE--EeC
Confidence            99999999999999999999999999999999987531   2233333233467899999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                       ++    +++.+......+..+++.++|.++..+|++.
T Consensus       267 -~~----l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~  299 (410)
T PRK06290        267 -EL----IVKAFATVKDNNDSGQFIAIQKAGIYALDHP  299 (410)
T ss_pred             -HH----HHHHHHHHHhccccCCcHHHHHHHHHHhhCc
Confidence             66    5666666666666788889999998888753

>PRK05942 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5.8e-39  Score=311.19  Aligned_cols=258  Identities=17%  Similarity=0.161  Sum_probs=204.0

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCc-EEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR-VATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~-i~~~~t~ggt  161 (363)
                      +++++|+.|.|.   . + +++.+.++............|++..|.++||+++|+|+...++..+++++ |++  |.|++
T Consensus        35 ~~~i~l~~g~p~---~-~-~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~v--t~G~~  107 (394)
T PRK05942         35 LDLIDLGMGNPD---G-A-APQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALP--LLGSK  107 (394)
T ss_pred             CCeEEcCCCCCC---C-C-CCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEE--ccChH
Confidence            368999999763   1 1 23434444333332333378999999999999999999877777778874 877  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++  +..++.|||+|++++|+|+.+...+...|++++.++++.++++++|++.+++.+.   +++++++++|||||
T Consensus       108 ~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~P~NP  182 (394)
T PRK05942        108 EGLTHL--ALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA---QQAKILYFNYPSNP  182 (394)
T ss_pred             HHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcc---ccceEEEEcCCCCC
Confidence            999988  4445789999999999999999999999999999998655567899999998886   35678888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|++++++||+||+|.++.+++.  ...++..+.+..+.+++++||||.||++|+|+||+  +++
T Consensus       183 tG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i--~~~  258 (394)
T PRK05942        183 TTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGY--QPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFV--VGN  258 (394)
T ss_pred             CCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCCChhhCCCccccEEEEecchhccCChhhheeee--ecC
Confidence            99999999999999999999999999999999987542  12233333222456899999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccccc
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQR  361 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~  361 (363)
                       ++    +++.++........+++.++|.++..+|+..++
T Consensus       259 -~~----l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~  293 (394)
T PRK05942        259 -RH----IIQGLRTLKTNLDYGIFSALQKAAETALQLPDS  293 (394)
T ss_pred             -HH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHH
Confidence             66    566666665555567888999999888865443

>PRK12414 putative aminotransferase; Provisional

Probab=100.00  E-value=6.8e-39  Score=309.62  Aligned_cols=256  Identities=14%  Similarity=0.192  Sum_probs=208.7

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC-CcEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt  161 (363)
                      ++.|+|+.|.+.     ..+++.+.+++.+...... .+|.+..|.++||+++++++...+|..+++ ++|++  |.|++
T Consensus        29 ~~~i~l~~g~p~-----~~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~i--t~g~~  100 (384)
T PRK12414         29 HDALNLSQGAPN-----FAPDPALVEGVARAMRDGH-NQYAPMAGIAALREALAEKTERLYGARYDPASEVTV--IASAS  100 (384)
T ss_pred             CCeEEcCCCCCC-----CCCCHHHHHHHHHHHHhCC-CCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--ECChH
Confidence            478999999862     2236677777766554333 679999999999999999987777776665 68988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++  +..++.+||+|++++|+|..+...++..|++++.+++++ +++.+|++.+++.++   +++++++++|||||
T Consensus       101 ~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~---~~~~~v~i~~p~NP  174 (384)
T PRK12414        101 EGLYAA--ISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-EDFRVNWDEVAAAIT---PRTRMIIVNTPHNP  174 (384)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCc-cccccCHHHHHhhcC---cccEEEEEcCCCCC
Confidence            999888  445578999999999999999999999999999999853 457899999999886   24667788999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++++++|+||+|.++.+++.  ...++..+.+..+++++++||||.||++|+|+||+  +++
T Consensus       175 TG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~--v~~  250 (384)
T PRK12414        175 SATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGA--RHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYC--LAP  250 (384)
T ss_pred             CCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCC--CccCcccCcCccCcEEEEecccccccCccceEEEE--ecC
Confidence            99999999999999999999999999999999988642  12233222223468999999999999999999999  776


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccccc
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQR  361 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~  361 (363)
                       ++    +++++.+.......+++.++|.++..+|.+.+.
T Consensus       251 -~~----l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~  285 (384)
T PRK12414        251 -AE----LMDEIRKVHQFMVFSADTPMQHAFAEALAEPAS  285 (384)
T ss_pred             -HH----HHHHHHHHHhheecCCCcHHHHHHHHHhcCChH
Confidence             56    566676666556678999999999998876543

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=100.00  E-value=1.5e-38  Score=309.93  Aligned_cols=275  Identities=16%  Similarity=0.164  Sum_probs=213.8

Q ss_pred             hhhHHHHHhc-CCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCC-----
Q 017967           70 ILGVSEAFKA-DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD-----  143 (363)
Q Consensus        70 ~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~-----  143 (363)
                      +......+.. ...+++|+|+.|.|. .+....+++.+.+++.+.+......+|++..|.++||+++|+++...+     
T Consensus        19 ~~~~~~~~~~~~~~~~~i~l~~g~p~-~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~   97 (412)
T PTZ00433         19 LRTVTDNAKPSPSPKSIIKLSVGDPT-LDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKES   97 (412)
T ss_pred             HHHHHHhhccCCCCCCeeecCCcCCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhcccccc
Confidence            3333444443 244589999999973 221123567888887776654334789989999999999999987543     


Q ss_pred             -CCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHH
Q 017967          144 -NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (363)
Q Consensus       144 -~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  222 (363)
                       +..+++++|++  |+|+++++.++.  ..++.+||+|+++.|+|..|...++..|++++.+++++++++++|++.+++.
T Consensus        98 ~~~~~~~~~i~i--t~G~~~al~~~~--~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~  173 (412)
T PTZ00433         98 LKSTIKKDNVVL--CSGVSHAILMAL--TALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRL  173 (412)
T ss_pred             ccCCCChhhEEE--eCChHHHHHHHH--HHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHH
Confidence             45688999988  999999999984  4446799999999999999999999999999999986556789999999988


Q ss_pred             HHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcC
Q 017967          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (363)
Q Consensus       223 l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~  302 (363)
                      ++.   ++++++++|||||||.+++.+++++|+++|+++|++||+||+|.+|.+++.  ...++..+ ....++++++||
T Consensus       174 ~~~---~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~Sf  247 (412)
T PTZ00433        174 VDD---RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA--TFTSVADF-DTTVPRVILGGT  247 (412)
T ss_pred             hcc---CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCC--Cccchhhc-cCCCceEEEccc
Confidence            763   456777899999999999999999999999999999999999999987642  22344444 223468999999


Q ss_pred             ccccccccccceEEEEeeCCh-hHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          303 SKNLGLYAERIGAMNVVCSSS-DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       303 SK~~~l~G~RvG~i~~v~~~~-~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ||.||++|+|+||+  +++++ ...+.+++.+.+... ...+++.++|.+++.+|..
T Consensus       248 SK~~~~pGlRlG~~--i~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~  301 (412)
T PTZ00433        248 AKNLVVPGWRLGWL--LLVDPHGNGGDFLDGMKRLGM-LVCGPCSVVQAALGEALLN  301 (412)
T ss_pred             hhhcCCCCeeEEEE--EEeCCcccHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHhc
Confidence            99999999999999  65222 112236666665543 3458999999999888764

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=100.00  E-value=2.5e-38  Score=306.65  Aligned_cols=272  Identities=16%  Similarity=0.102  Sum_probs=210.8

Q ss_pred             CCCCchhhHHHHHhcC---CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhc
Q 017967           65 APPDPILGVSEAFKAD---TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG  141 (363)
Q Consensus        65 ~~~~~~~~~~~~~~~~---~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~  141 (363)
                      .+.+++..+...+...   ...+.++|+.|+|.     ..+++.+.+++.+... . ...|++..|.++||+++|+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~-----~~~~~~~~~a~~~~~~-~-~~~Y~~~~G~~~lr~aia~~~~~   79 (393)
T TIGR03538         7 LQPYPFEKLAALLAGVTPPASKPPIALSIGEPK-----HPTPAFVLEALRENLH-G-LSTYPTTKGLPELRQAIARWLER   79 (393)
T ss_pred             CCccHHHHHHHHHHhhhhhcCCCeEEecCCCCC-----CCCCHHHHHHHHHHhh-c-cCCCCCCCCCHHHHHHHHHHHHH
Confidence            3444555555555322   34589999999973     1235677777776543 2 37799999999999999999988


Q ss_pred             CCCCc--ccCC-cEEEEeccchhHHHHHHHHHHHHhCCCCE--EEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCH
Q 017967          142 ADNSV--LKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAK--VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (363)
Q Consensus       142 ~~~~~--~~~~-~i~~~~t~ggt~al~l~~~l~~~~~~gd~--Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (363)
                      .++..  ++++ +|++  |+|+++++.++  +..++.|||.  |++++|+|+.|...++..|++++.+++++++++.+|+
T Consensus        80 ~~~~~~~~~~~~~i~i--t~Ga~~al~~~--~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~  155 (393)
T TIGR03538        80 RFDLPTGVDPERHVLP--VNGTREALFAF--AQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDF  155 (393)
T ss_pred             hhCCcccCCCCceEEE--CCCcHHHHHHH--HHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCH
Confidence            76665  6774 7988  99999999988  3445789986  9999999999999999999999999996555678999


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHH-HHHH----h
Q 017967          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV-RLFA----T  291 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~----~  291 (363)
                      +.+++++.+   ++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++.. ...+. ..+.    +
T Consensus       156 ~~l~~~~~~---~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~-~~~~~~~~~~~~~~~  231 (393)
T TIGR03538       156 DAVPESVWR---RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGN-PPAGLLQAAAQLGRD  231 (393)
T ss_pred             HHHHHHHhh---cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCC-CCcCHHHhccccccc
Confidence            999988863   4567778999999999999999999999999999999999999999875311 11121 1111    1


Q ss_pred             cCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       292 ~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ..+++|+++||||.|+++|+|+||+  +++ ++    +++++.+.......+++.+.|.++...+..
T Consensus       232 ~~~~vi~i~S~SK~~~~~GlRvG~~--i~~-~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  291 (393)
T TIGR03538       232 DFRRCLVFHSLSKRSNLPGLRSGFV--AGD-AE----ILKAFLRYRTYHGCAMPIPTQLASIAAWND  291 (393)
T ss_pred             ccccEEEEecchhhcCCcccceEEE--ecC-HH----HHHHHHHHHHhhccCcCHHHHHHHHHHhcC
Confidence            3468999999999999999999999  766 66    455555554444557889999998776643

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02231 alanine transaminase

Probab=100.00  E-value=7.8e-38  Score=311.66  Aligned_cols=262  Identities=16%  Similarity=0.105  Sum_probs=203.4

Q ss_pred             CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHc--cCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE--RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~--~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      ..++.|+|+.|.+      .++.+.+.++...+..  .....+|++..|.++||+++|+++.+.++..+++++|++  |.
T Consensus       127 ~~p~~i~~~~~~~------~fp~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~i--T~  198 (534)
T PLN02231        127 DHPSLLDKSETHG------LFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFL--TD  198 (534)
T ss_pred             cCCccCCCCCccc------cCCHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEE--eC
Confidence            3357788875432      2334555555443322  223477999999999999999999888888999999988  99


Q ss_pred             chhHHHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC---CCcEEEE
Q 017967          159 SGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILL  234 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~-~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~  234 (363)
                      |+++++.++..  .++. +||.|+++.|+|+.|...++..|.+++.++++++++|++|++.|++.+++..   .++++++
T Consensus       199 Ga~~ai~~~~~--~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~iv  276 (534)
T PLN02231        199 GASPAVHMMMQ--LLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALV  276 (534)
T ss_pred             CHHHHHHHHHH--HhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence            99999999843  3353 7999999999999999999999999999999765678999999999987521   1466777


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh------cCCeEEEEEcCcccc-c
Q 017967          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT------RGMELLVAQSYSKNL-G  307 (363)
Q Consensus       235 i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~------~~~~vi~~~S~SK~~-~  307 (363)
                      ++|||||||.+++.+++++|+++|+++|++||+||+|+++.|++. ....++..+..      ...++++++||||.+ |
T Consensus       277 l~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~-~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g  355 (534)
T PLN02231        277 VINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPD-KKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYG  355 (534)
T ss_pred             EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCcccHHHHHhhhccccCCceEEEEeccCccccc
Confidence            899999999999999999999999999999999999999998531 22334444421      123699999999975 8


Q ss_pred             cccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++|+|+||+.+...+++    +++++.+... ...+++.++|.++..+++.
T Consensus       356 ~pGlRiGy~~~~~~~~~----l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~  401 (534)
T PLN02231        356 ECGKRGGYMEVTGFTSD----VREQIYKVAS-VNLCSNISGQILASLVMSP  401 (534)
T ss_pred             CCccceEEEEEecCCHH----HHHHHHHHHh-hhcCCChHHHHHHHHHhCC
Confidence            99999999933323577    5555555543 3457788899988887754

>PRK07337 aminotransferase; Validated

Probab=100.00  E-value=4.4e-38  Score=304.47  Aligned_cols=251  Identities=18%  Similarity=0.260  Sum_probs=207.2

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .+++++|+.|.+.     ..+++.+.+++.+...... ..|.+..|.++||+++|+++...++..+++++|++  |.|++
T Consensus        29 ~~~~i~l~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~--t~G~~  100 (388)
T PRK07337         29 GRDIIHMGIGEPD-----FTAPEPVVEAAARALRRGV-TQYTSALGLAPLREAIAAWYARRFGLDVAPERIVV--TAGAS  100 (388)
T ss_pred             CCCEEEeCCcCCC-----CCCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEE--ecCcH
Confidence            3589999999862     1234566677666554333 67988999999999999999887788888999988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++.  ..++.+||+|++++|+|+.+...++..|++++.++++.++++++|++.+++.+.   ++++++++++||||
T Consensus       101 ~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NP  175 (388)
T PRK07337        101 AALLLAC--LALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWG---ERTRGVLLASPSNP  175 (388)
T ss_pred             HHHHHHH--HHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcC---ccceEEEEECCCCC
Confidence            9999884  344679999999999999999999999999999998655578999999999886   34667788999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++++++|+||+|.++.+++.   ..+.   ....+++++++||||.||++|+|+||+  +++
T Consensus       176 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~---~~~~---~~~~~~vi~~~S~SK~~~~~G~RiG~~--~~~  247 (388)
T PRK07337        176 TGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA---PVSA---LSLGDDVITINSFSKYFNMTGWRLGWL--VVP  247 (388)
T ss_pred             CCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC---CcCh---hhccCCEEEEEechhhcCCchhheeee--ecC
Confidence            99999999999999999999999999999999987532   1222   233578999999999999999999999  776


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                       ++    +++.+.........+++.++|.++..++.+
T Consensus       248 -~~----l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  279 (388)
T PRK07337        248 -EA----LVGTFEKLAQNLFICASALAQHAALACFEP  279 (388)
T ss_pred             -HH----HHHHHHHHHHHhccCCChHHHHHHHHHhcc
Confidence             55    566666666666678899999999888764

>PRK07550 hypothetical protein; Provisional

Probab=100.00  E-value=6e-38  Score=303.34  Aligned_cols=278  Identities=17%  Similarity=0.147  Sum_probs=217.7

Q ss_pred             CCCCCchhhHHHHHhcC--CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhc
Q 017967           64 MAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG  141 (363)
Q Consensus        64 ~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~  141 (363)
                      ...+..+.++.+.+...  ...+.++|+.|.+.     ..+++.+.+++.+.........|.+..|.++||+++++++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~   82 (386)
T PRK07550          8 ALFPPPIPEVRAWLAGYDGADGPLIDLSQAVPG-----YPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSR   82 (386)
T ss_pred             hcCChHHHHHHHHHHHHhhcCCCeEEeCCCCCC-----CCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHH
Confidence            33444566665554322  23478999999863     123566777766655333346798899999999999999988


Q ss_pred             CCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHH
Q 017967          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      .++..+++++|++  |.|+++++.+++  ..++.+||+|++++|+|..+...++..|++++.++++++.++.+|++.+++
T Consensus        83 ~~g~~~~~~~i~~--t~G~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~  158 (386)
T PRK07550         83 LYGAAISPEQVHI--TSGCNQAFWAAM--VTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEA  158 (386)
T ss_pred             HhCCCCCcceEEE--ecCcHHHHHHHH--HHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHH
Confidence            8888888999988  999999998884  334679999999999999999999999999999999654567789999999


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      .+++   +++++++++||||||.+++.+++++|+++|+++|++||+||+|.+|.++..  ...+.....+..+++++++|
T Consensus       159 ~~~~---~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S  233 (386)
T PRK07550        159 LITP---RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGG--APHDLFADPDWDDTLVHLYS  233 (386)
T ss_pred             Hhcc---cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC--CCcchhhCCCccccEEEEec
Confidence            8874   355666679999999999999999999999999999999999999976421  11122211123568999999


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      |||.||++|+|+||+  +++ ++    +++++.........++|.++|.+++.+|+..++|
T Consensus       234 ~SK~~g~~G~RiG~i--~~~-~~----~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~  287 (386)
T PRK07550        234 FSKSYALTGHRVGAV--VAS-PA----RIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADW  287 (386)
T ss_pred             chhhccCcccceEee--ecC-HH----HHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHH
Confidence            999999999999999  765 55    5666666666667788999999999988765555

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=100.00  E-value=1.2e-37  Score=301.70  Aligned_cols=258  Identities=18%  Similarity=0.204  Sum_probs=209.0

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC-CcEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt  161 (363)
                      ++.|+|+.|.+.     ..+++.+.++..+...... ..|.+..|.++||+++++++...++..+++ ++|++  |+|++
T Consensus        30 ~~~i~l~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~i--t~G~~  101 (391)
T PRK07309         30 PGILKLTLGEPD-----FTTPDHVKEAAKRAIDANQ-SHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILV--TIGAT  101 (391)
T ss_pred             CCeEEcCCCCCC-----CCCCHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCChH
Confidence            479999999873     2235677777776654333 569899999999999999998777777664 78988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++++++  +..++.+||.|++++|+|.++..+++..|++++.++.+ ++++.+|++.+++++...+++++++++++||||
T Consensus       102 ~al~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NP  178 (391)
T PRK07309        102 EALSAS--LTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTT-ENDFVLTPEMLEKAILEQGDKLKAVILNYPANP  178 (391)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecC-CcCCcCCHHHHHHHhhccCCCeEEEEEECCCCC
Confidence            999998  44557799999999999999999999999999999974 345789999999998754345678888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+  ..+++++++||||.||++|+|+||+  +++
T Consensus       179 tG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~--~~~~~~~~--~~~~~i~~~S~SK~~g~~GlRvG~~--v~~  252 (391)
T PRK07309        179 TGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE--PHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLI--FAP  252 (391)
T ss_pred             CCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC--CCCCHHHh--ccCCEEEEecChhhccCccceeEEE--EeC
Confidence            99999999999999999999999999999999998532  22333333  2378999999999999999999999  776


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       ++    +++.+.........+++.++|.++..+|++.+.|
T Consensus       253 -~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  288 (391)
T PRK07309        253 -AE----FTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDD  288 (391)
T ss_pred             -HH----HHHHHHHHHhhcccCCChHHHHHHHHHHhCChhH
Confidence             66    4555555444455688999999999998765443

>PRK05839 hypothetical protein; Provisional

Probab=100.00  E-value=7.1e-38  Score=301.45  Aligned_cols=266  Identities=14%  Similarity=0.068  Sum_probs=201.6

Q ss_pred             CchhhHHHHHhcCCC---CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCC
Q 017967           68 DPILGVSEAFKADTD---EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (363)
Q Consensus        68 ~~~~~~~~~~~~~~~---~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (363)
                      .++..+.+.+.....   .++++|+.|+|. .    .+++.+.+++.+...  ....|++..|.++||+++|+++...++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~-~----~~~~~~~~a~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~g   78 (374)
T PRK05839          6 YPFEKLRELLKEITPNKEYKGLDLTIGEPQ-F----ETPKFIQDALKNNAH--LLNKYPKSAGEESLREAQRGFFKRRFK   78 (374)
T ss_pred             chHHHHHHHHHHhhhcCCCCeEEcCCCCCC-C----CCCHHHHHHHHHHhh--ccCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            344444444432222   389999999873 1    124667777665442  236798899999999999999988888


Q ss_pred             CcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHH
Q 017967          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (363)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (363)
                      ..+++++|++  |+|+++++.++..++....+||.|+++.|+|+.|...++..|+++++++++.++++.+|++..+  +.
T Consensus        79 ~~~~~~~I~i--t~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~~  154 (374)
T PRK05839         79 IELKENELIP--TFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--LQ  154 (374)
T ss_pred             CCCCcceEEE--ecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--hc
Confidence            8889999988  9999999887743221114789999999999999999999999999999865555666654432  22


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH-----hcCCeEEEE
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-----TRGMELLVA  299 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-----~~~~~vi~~  299 (363)
                          +++++++||||||||.+++.+++++|+++|+++|++||+||+|.++.++.   ...++....     ...+++|++
T Consensus       155 ----~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~---~~~s~~~~~~~~~~~~~~~vi~~  227 (374)
T PRK05839        155 ----EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT---PPPSLLEASILVGNESFKNVLVI  227 (374)
T ss_pred             ----cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC---CCCCHhhhhcccCccccCcEEEE
Confidence                35677779999999999999999999999999999999999999987542   122322221     133799999


Q ss_pred             EcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       300 ~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +||||.|++||+|+||+  +++ ++    +++++.........+++.+.|.++...|..
T Consensus       228 ~SfSK~~~~~GlRiG~i--i~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  279 (374)
T PRK05839        228 NSISKRSSAPGLRSGFI--AGD-AS----ILKKYKAYRTYLGCASPLPLQKAAAVAWLD  279 (374)
T ss_pred             eccccccCCccceeEEE--ecC-HH----HHHHHHHHHhhcCCCCChHHHHHHHHHhcc
Confidence            99999999999999999  765 66    556666555444567889999988876653

>PRK06107 aspartate aminotransferase; Provisional

Probab=100.00  E-value=7.1e-38  Score=304.29  Aligned_cols=259  Identities=20%  Similarity=0.247  Sum_probs=212.6

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .+++++|+.|.|.     ..+++.+.+++.+...... .+|.+..|.++||+++++++.+.++..+++++|++  |.|++
T Consensus        32 ~~~~i~l~~g~p~-----~~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~--t~G~~  103 (402)
T PRK06107         32 GRSIVDLTVGEPD-----FDTPDHIKQAAVAAIERGE-TKYTLVNGTPALRKAIIAKLERRNGLHYADNEITV--GGGAK  103 (402)
T ss_pred             cCCEEEcCCCCCC-----CCCCHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--eCCHH
Confidence            3478999999973     1235667777777664433 67999999999999999999877788888999988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +|+.++  +...+.+||+|++++|+|..|...+...|.+++.++++.++++.+|++.+++.+.   ++++++++++||||
T Consensus       104 ~al~~~--~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NP  178 (402)
T PRK06107        104 QAIFLA--LMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAIT---PRTRWLILNAPSNP  178 (402)
T ss_pred             HHHHHH--HHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC---cCceEEEEECCCCC
Confidence            999988  4455779999999999999999999989998888888544567899999999876   34667777999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhc-CCeEEEecCCCCCcCCCCCCchhHHHHHH-hcCCeEEEEEcCccccccccccceEEEEe
Q 017967          242 TGIDPTPEQWEKIADVIQEK-NHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      ||.+++.+++++|+++|+++ ++++|+||+|.++.+++.  ..+++..+. +..+++++++||||.||+||+|+||+  +
T Consensus       179 tG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~--~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~--~  254 (402)
T PRK06107        179 TGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE--PTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYA--A  254 (402)
T ss_pred             CCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCC--CCCCHHHhCcCccCCEEEEeccchhhcCcccceeee--e
Confidence            99999999999999999998 999999999999987642  233443332 22468999999999999999999999  7


Q ss_pred             eCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          320 CSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ++ ++    +++.+.........+++.++|.++..+|+..+.|
T Consensus       255 ~~-~~----~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~  292 (402)
T PRK06107        255 GP-AD----LIAAINKLQSQSSSCPSSISQAAAAAALNGDQSF  292 (402)
T ss_pred             cC-HH----HHHHHHHHHHhcccCCChHHHHHHHHHhcCChHH
Confidence            66 66    5666777766667789999999999998765555

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-38  Score=308.15  Aligned_cols=255  Identities=16%  Similarity=0.208  Sum_probs=216.6

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHc---cCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE---RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~---~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      .+..++|+.|.+.   ...++...+++.......   ......|.+..|.++||+++++++....|..+++++|++  |.
T Consensus        88 ~~~~i~f~~g~p~---~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~Iii--T~  162 (459)
T COG1167          88 DPSVIDFAGGLPD---PSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVI--TS  162 (459)
T ss_pred             CCceecCCCCCCC---cccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEE--eC
Confidence            3689999999863   234456777777766652   221477888899999999999999878899999999998  99


Q ss_pred             chhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCC
Q 017967          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p  238 (363)
                      |+++|++++.++  ++.|||+|++++|+|.....+++..|+++++||++   +.|+|+|.|++.++.. +.+.+|++++.
T Consensus       163 G~q~al~l~~~~--l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d---~~G~~~e~le~~~~~~-~~k~~y~~P~~  236 (459)
T COG1167         163 GAQQALDLLLRL--LLDPGDTVLVEDPTYPGALQALEALGARVIPVPVD---EDGIDPEALEEALAQW-KPKAVYVTPTF  236 (459)
T ss_pred             CHHHHHHHHHHH--hCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC---CCCCCHHHHHHHHhhc-CCcEEEECCCC
Confidence            999999998443  46699999999999999999999999999999995   4599999999999864 45789999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEE
Q 017967          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (363)
Q Consensus       239 ~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~  318 (363)
                      |||||.+||.+++++|+++|+++|++||+||.|.+|.++..+  .+++.. .+..++||+++||||++. ||+|+||+  
T Consensus       237 qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p--~~~l~~-ld~~~rViy~gSFSK~l~-PglRlG~v--  310 (459)
T COG1167         237 QNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPP--PPPLKA-LDAPGRVIYLGSFSKTLA-PGLRLGYV--  310 (459)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCC--CCChHh-hCCCCCEEEEeeehhhcc-cccceeee--
Confidence            999999999999999999999999999999999999998532  223333 356789999999999996 99999999  


Q ss_pred             eeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          319 VCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       319 v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++| ++    +++++...+.....+++.+.|.+++..|.+
T Consensus       311 v~p-~~----~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~  345 (459)
T COG1167         311 VAP-PE----LIEKLLRLKQAADLGPSSLSQAALAAFLLS  345 (459)
T ss_pred             eCC-HH----HHHHHHHHHHHhcCCCChHHHHHHHHHHHc
Confidence            877 56    677777777788889999999999988773

>PRK07683 aminotransferase A; Validated

Probab=100.00  E-value=9.9e-38  Score=301.82  Aligned_cols=256  Identities=16%  Similarity=0.195  Sum_probs=207.8

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      ++.|+|+.|.|.     ..+++.+.+++.+...... .+|++..|.++||+++++++...++..++++ +|++  |.|++
T Consensus        28 ~~~i~l~~~~p~-----~~~~~~~~~a~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~--t~G~~   99 (387)
T PRK07683         28 DNLISLTIGQPD-----FPTPSHVKEAAKRAITENY-TSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIV--TIGAS   99 (387)
T ss_pred             CCeEEecCCCCC-----CCCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCChH
Confidence            478999999862     2235677777777664433 6798899999999999999987777778888 9988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +|+.++.  ..++.+||.|+++.|+|..|...++..|++++.++.+ ++++.+|++.+++.++.   +++++++++||||
T Consensus       100 ~al~~~~--~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~~~---~~~~i~i~~p~NP  173 (387)
T PRK07683        100 EAIDIAF--RTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTR-STGFRLTAEALENAITE---KTRCVVLPYPSNP  173 (387)
T ss_pred             HHHHHHH--HHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecC-cccCCCCHHHHHHhcCc---CceEEEEeCCCCC
Confidence            9999884  3446799999999999999999999999999999985 34677788999988763   4567788999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++|++||+||+|+++.+++.   ..++..+.+..+++++++||||.||+||+|+||+  +++
T Consensus       174 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i--~~~  248 (387)
T PRK07683        174 TGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP---HTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFL--FAP  248 (387)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC---cCChhhccCCcCCeEEEeeccccccCccceeEEE--EcC
Confidence            99999999999999999999999999999999987532   2244444334568999999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       ++    +++.+.+.......+++.++|.++..+|...+.|
T Consensus       249 -~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  284 (387)
T PRK07683        249 -SY----LAKHILKVHQYNVTCASSISQYAALEALTAGKDD  284 (387)
T ss_pred             -HH----HHHHHHHHHHhccCCCChHHHHHHHHHHhCChHH
Confidence             66    4555554444445577889999999888765544

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=100.00  E-value=7.2e-38  Score=304.93  Aligned_cols=253  Identities=16%  Similarity=0.169  Sum_probs=192.0

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHcc----CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      .+++++|+.|++. .    .+++.+.+++.+....    ....+|.+..|.++||+++|+++...++..+++++|++  |
T Consensus        33 ~~~~i~l~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~i--t  105 (409)
T PRK07590         33 EAKIIRLGIGDVT-Q----PLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFI--S  105 (409)
T ss_pred             CCceEEecCcCCC-C----CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEE--C
Confidence            3479999999863 2    2345555555554432    13368999999999999999998888888899999988  9


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC-----------eEEEecccCCCCCCCHHHHHHHHHcC
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP-----------WSEYRYYDPKTVGLDFEGMIADIKAA  226 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~-----------~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (363)
                      +|+++++.++   +..+.|||+|++++|+|+.|...++..|.+           +++++++.++++.+|++.        
T Consensus       106 ~Ga~~al~~l---~~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~--------  174 (409)
T PRK07590        106 DGAKCDTGNI---LDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE--------  174 (409)
T ss_pred             CCHHHHHHHH---HHhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc--------
Confidence            9999998876   345679999999999999999999999987           889998543344444321        


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc
Q 017967          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (363)
Q Consensus       227 ~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  306 (363)
                       ++++++++||||||||.+++.+++++|+++|++++++||+||+|.+|.+++.  ...++..+....+++|+++||||.|
T Consensus       175 -~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~--~~~~~~~~~~~~~~vi~~~SfSK~~  251 (409)
T PRK07590        175 -EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPS--LPHSIYEIEGARECAIEFRSFSKTA  251 (409)
T ss_pred             -cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCC--CCcchhhCCCcccceEEEecCcccc
Confidence             2456777789999999999999999999999999999999999999987532  1223333322235799999999999


Q ss_pred             ccccccceEEEEeeCChhHHHHH--------HHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          307 GLYAERIGAMNVVCSSSDLAARV--------KSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~~~~~~~~~--------~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |+||+|+||+  +++ ++.++++        .+.........+.+++.+.|.+++.+|+.
T Consensus       252 ~~pGlRiG~~--i~~-~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~  308 (409)
T PRK07590        252 GFTGTRCAYT--VVP-KELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSP  308 (409)
T ss_pred             CCcCceeEEE--EcC-HHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcC
Confidence            9999999999  776 5543311        11122222333457899999999888764

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-37  Score=300.63  Aligned_cols=257  Identities=19%  Similarity=0.211  Sum_probs=209.1

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCccc-CCcEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-EQRVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-~~~i~~~~t~ggt  161 (363)
                      +++++|+.|.+.     ..+++.+.+++.+.........|.+..|.+++|+++++++....+..++ +++|++  |.|++
T Consensus        27 ~~~~~l~~g~~~-----~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~--t~G~~   99 (389)
T PRK05957         27 PGTISLGQGVVS-----YPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVV--TAGSN   99 (389)
T ss_pred             CCeEEccCCCCC-----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--eCChH
Confidence            478999999863     2246677777776654333367999999999999999999877777666 678988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++  +...+.+||.|++++|+|..+...++..|++++.++.+  +++++|++.+++.+++   +++++++++||||
T Consensus       100 ~~l~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~klv~~~~p~NP  172 (389)
T PRK05957        100 MAFMNA--ILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD--DNYQLQPEAIEQAITP---KTRAIVTISPNNP  172 (389)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC--CCCCcCHHHHHHhcCc---CceEEEEeCCCCC
Confidence            998877  34446799999999999999999899999999999983  4678999999998863   4667788999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...+...+.+...++|+++||||.||++|+|+||+  +++
T Consensus       173 tG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~--~~~  248 (389)
T PRK05957        173 TGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGV--KHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYM--VIP  248 (389)
T ss_pred             CCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCC--CccChhhCCCccCcEEEEecchhhccCccceeEEE--ecC
Confidence            99999999999999999999999999999999988642  12223233345578999999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       ++    +++++.........+++.+.|.++...|++.+.|
T Consensus       249 -~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  284 (389)
T PRK05957        249 -IH----LLEAIKKIQDTILICPPVVSQYAALGALQVGKSY  284 (389)
T ss_pred             -HH----HHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHH
Confidence             56    5666766666666788999999998888765443

>PRK08912 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=300.91  Aligned_cols=257  Identities=18%  Similarity=0.189  Sum_probs=202.9

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      +++++|+.|.|. .   +. ++.+.++..+...... .+|++..|.++||+++++++...++..++++ +|++  |.|++
T Consensus        26 ~~~i~l~~g~p~-~---~~-p~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~~   97 (387)
T PRK08912         26 HGAINLGQGFPD-D---PG-PEDVRRAAADALLDGS-NQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMV--TSGAT   97 (387)
T ss_pred             CCeEEccCCCCC-C---CC-CHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEE--eCCcH
Confidence            478999999973 2   22 3345555444443333 6799999999999999999987777778888 8988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++  +..++.+||+|+++.|+|+.+...++..|++++.++++ ++++++|++.+++.+..   ++++++++|||||
T Consensus        98 ~al~~~--~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~~~---~~~~v~l~~p~NP  171 (387)
T PRK08912         98 EALAAA--LLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLE-PPHWRLPRAALAAAFSP---RTKAVLLNNPLNP  171 (387)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC-cccCcCCHHHHHHHhCc---cceEEEEeCCCCC
Confidence            999877  44557799999999999999999999999999999984 34688999999998863   4567778899999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|++++++||+||+|.++.+++.  ...++..+.+..+++++++||||.||++|+|+||+  +++
T Consensus       172 tG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~--~~~  247 (387)
T PRK08912        172 AGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGR--RHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFV--CAA  247 (387)
T ss_pred             cCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCC--CCcChhhCCCccCceEEEeechhhccCcCceeEEE--ecC
Confidence            99999999999999999999999999999999988642  22233333223468999999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       ++    +++.+.........+.++..|.++...|...++|
T Consensus       248 -~~----~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  283 (387)
T PRK08912        248 -PP----LLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDY  283 (387)
T ss_pred             -HH----HHHHHHHHHhhccccCChHHHHHHHHHHhCCHHH
Confidence             66    4555555554444567777888887776544444

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.8e-37  Score=299.45  Aligned_cols=259  Identities=20%  Similarity=0.197  Sum_probs=209.8

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      +++++|+.|++.     ..+++.+.+++.+...... ..|.+..|.++||+++++++.+.++..+++++|++  |.|+++
T Consensus        24 ~~~i~l~~g~~~-----~~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~--t~g~~~   95 (382)
T PRK06108         24 EGVLPLWFGESD-----LPTPDFIRDAAAAALADGE-TFYTHNLGIPELREALARYVSRLHGVATPPERIAV--TSSGVQ   95 (382)
T ss_pred             CCeEEecCCCCC-----CCCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEE--eCChHH
Confidence            478999999972     2235678888777664433 56999999999999999999877777788999988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccC-CCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++.++.  ..++.+||.|++++|+|+.+...++..|++++.+|++.+ .++.+|++.+++.++   ++++++++++||||
T Consensus        96 al~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~p~NP  170 (382)
T PRK06108         96 ALMLAA--QALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAIT---PRTRALFINSPNNP  170 (382)
T ss_pred             HHHHHH--HHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcC---ccceEEEEECCCCC
Confidence            998883  445679999999999999999999999999999998643 356799999998886   24667778999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.++.. ....++..+.+..+++++++||||.||++|+|+||+  +++
T Consensus       171 tG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~--~~~  247 (382)
T PRK06108        171 TGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPG-GRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWL--VAP  247 (382)
T ss_pred             CCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCC-CCCCCHhhcCCCcCCEEEEeechhhccCcccceeee--eCC
Confidence            99999999999999999999999999999999987511 122333444344578999999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       ++    +++.+.........+++.+.|.++..+|+..++|
T Consensus       248 -~~----~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~  283 (382)
T PRK06108        248 -PA----LGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDF  283 (382)
T ss_pred             -HH----HHHHHHHHHHhcccCCChHHHHHHHHHHhCChHH
Confidence             66    4555555544456788999999998888765544

>PRK09082 methionine aminotransferase; Validated

Probab=100.00  E-value=8.5e-38  Score=302.22  Aligned_cols=256  Identities=14%  Similarity=0.164  Sum_probs=207.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~  162 (363)
                      ++|+|+.|.+. ..    .++.+.+++.+...... .+|.+..|.++||+++++++.+.++..++++ +|++  |.|+++
T Consensus        31 ~~i~l~~g~~~-~~----~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~--t~G~~~  102 (386)
T PRK09082         31 GAINLSQGFPD-FD----GPPYLVEALAYAMAAGH-NQYPPMTGVAALREAIAAKTARLYGRQYDADSEITV--TAGATE  102 (386)
T ss_pred             CEEEecCCCCC-CC----CCHHHHHHHHHHHHcCC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCHHH
Confidence            78999999863 21    24556666666554333 6799999999999999999877667666665 7888  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++  +..++.+||+|+++.|+|..+...++..|++++.+++++ +++++|++.+++.++.   +++++++++|||||
T Consensus       103 al~~~--~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~---~~~~v~l~~p~NPt  176 (386)
T PRK09082        103 ALFAA--ILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQP-PDFRVDWQRFAAAISP---RTRLIILNTPHNPS  176 (386)
T ss_pred             HHHHH--HHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccccCCHHHHHHhcCc---cceEEEEeCCCCCC
Confidence            99888  445578999999999999999999999999999999853 4689999999998863   46677789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|+++|+++++++|+||+|.++.+++.  ...++..+....+++++++||||.||++|+|+||+  +++ 
T Consensus       177 G~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~i--v~~-  251 (386)
T PRK09082        177 GTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA--GHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYC--VAP-  251 (386)
T ss_pred             CcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCC--CCCChhhCcCccCcEEEEeechhhccchhhhhhhh--hCC-
Confidence            9999999999999999999999999999999988642  22344333333579999999999999999999999  766 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ++    +++.+++.......+++.+.|.+++.+|...++|
T Consensus       252 ~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  287 (386)
T PRK09082        252 AA----LSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEH  287 (386)
T ss_pred             HH----HHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHH
Confidence            66    5666666665556689999999999988644443

>PRK07777 aminotransferase; Validated

Probab=100.00  E-value=2.9e-37  Score=298.65  Aligned_cols=275  Identities=15%  Similarity=0.162  Sum_probs=213.1

Q ss_pred             CCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcC
Q 017967           63 TMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA  142 (363)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~  142 (363)
                      ...+...+..+......   +++++|+.|.|. ...    ++.+.++..+.+.... .+|.+..|.++||+++++++...
T Consensus         7 ~~~~~~~~~~~~~~~~~---~~~i~l~~g~p~-~~~----~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~   77 (387)
T PRK07777          7 RPFGTTIFAEMSALAVR---TGAVNLGQGFPD-EDG----PPEMLEAAQEAIAGGV-NQYPPGPGIPELRAAIAAQRRRR   77 (387)
T ss_pred             hhcCccHHHHHHHHHhh---CCeEEccCCCCC-CCC----CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHH
Confidence            33344455555555543   378999999973 222    2345555555443333 67988999999999999998777


Q ss_pred             CCCcccCC-cEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccC-CCCCCCHHHHH
Q 017967          143 DNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMI  220 (363)
Q Consensus       143 ~~~~~~~~-~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~  220 (363)
                      ++..++++ +|++  |.|+++++.++  +..++.+||+|+++.|+|..+..+++..|.+++.+++++. .++.+|++.++
T Consensus        78 ~g~~~~~~~~i~~--t~G~~~al~~~--~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~  153 (387)
T PRK07777         78 YGLEYDPDTEVLV--TVGATEAIAAA--VLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALR  153 (387)
T ss_pred             hCCCCCCCCcEEE--eCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHH
Confidence            77777775 7988  99999999887  4555679999999999999999999999999999998654 35779999999


Q ss_pred             HHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEE
Q 017967          221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (363)
Q Consensus       221 ~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  300 (363)
                      +.+.+   ++++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++.  ...++..+.+..+++++++
T Consensus       154 ~~~~~---~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~  228 (387)
T PRK07777        154 AAVTP---RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA--RHLPLATLPGMRERTVTIS  228 (387)
T ss_pred             HhcCc---ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC--CcccHhhCCCCcCcEEEEe
Confidence            98763   456777899999999999999999999999999999999999999988542  1223333322346899999


Q ss_pred             cCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       301 S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ||||.||++|+|+||+  +++ ++    +++.+.........+++.+.|.+++.++...++|
T Consensus       229 S~SK~~g~~GlRiG~~--~~~-~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  283 (387)
T PRK07777        229 SAAKTFNVTGWKIGWA--CGP-AP----LIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAW  283 (387)
T ss_pred             echhhccCcCceeEEE--ecC-HH----HHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHH
Confidence            9999999999999999  665 55    5566655554445567888899988888766666

>PRK08361 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.4e-37  Score=299.58  Aligned_cols=256  Identities=18%  Similarity=0.224  Sum_probs=209.2

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      ++.|+|+.|++.     ..+++.+.++..+...... ..|.+..|.++||+++|+++...++..+++++|++  |.|+++
T Consensus        33 ~~~i~l~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~  104 (391)
T PRK08361         33 ENVISLGIGEPD-----FDTPKNIKEAAKRALDEGW-THYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIV--TAGAYE  104 (391)
T ss_pred             cCeEEcCCCCCC-----CCCCHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEE--eCChHH
Confidence            378999999862     1135677777777664433 57988999999999999998776677788999988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++  +..++.+||.|++++|+|..+...++..|++++.++++++.++++|++.+++.++.   +++++++++|||||
T Consensus       105 al~~~--~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~---~~~~v~i~~p~NPt  179 (391)
T PRK08361        105 ATYLA--FESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITK---RTRMIVINYPNNPT  179 (391)
T ss_pred             HHHHH--HHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc---ccEEEEEeCCCCCC
Confidence            99888  44456799999999999999999999999999999996555678999999998873   45677889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|+++|++++++||+||+|.++.+++.  ...+...+  ..+++++++||||.||++|+|+||+  +++ 
T Consensus       180 G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~--~~~~~i~~~s~SK~~~~~GlRiG~~--~~~-  252 (391)
T PRK08361        180 GATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA--KHYPMIKY--APDNTILANSFSKTFAMTGWRLGFV--IAP-  252 (391)
T ss_pred             CcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC--CCCCHhhc--CCCCEEEEecCchhcCCcHhhhhhh--ccC-
Confidence            9999999999999999999999999999999987532  12233222  2368999999999999999999999  765 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ++    +++.+.........+++.+.|.++..+|++.+.|
T Consensus       253 ~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  288 (391)
T PRK08361        253 EQ----VIKDMIKLHAYIIGNVASFVQIAGIEALRSKESW  288 (391)
T ss_pred             HH----HHHHHHHHHhhhccCCChHHHHHHHHHhcCCccc
Confidence            66    4555555555455688999999999998876654

>PRK07324 transaminase; Validated

Probab=100.00  E-value=1.1e-37  Score=299.95  Aligned_cols=246  Identities=17%  Similarity=0.136  Sum_probs=199.8

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++++|++|++. ..++.    .+ ++..+...... .+|++..|.++||+++|+++.+     +++++|++  |+|+++
T Consensus        26 ~~~~~~~~~e~~-~~~~~----~~-~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~-----~~~~~vi~--t~G~~~   91 (373)
T PRK07324         26 SCIDSLTLEELL-ALAGK----NP-EAFYQELGQKK-LTYGWIEGSPEFKEAVASLYQN-----VKPENILQ--TNGATG   91 (373)
T ss_pred             CCCCCCcHHHHH-hccCc----ch-HHHHHHHhcCC-ccCCCCCCCHHHHHHHHHHhcC-----CChhhEEE--cCChHH
Confidence            489999999983 33222    33 34333343333 6899999999999999999753     45789988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++  +..++.+||+|+++.|+|..+...++..|++++.+|++++.++.+|++.+++.++   ++++++++++|||||
T Consensus        92 al~~~--~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~---~~~kli~i~~p~NPt  166 (373)
T PRK07324         92 ANFLV--LYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVR---PNTKLICINNANNPT  166 (373)
T ss_pred             HHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCC---CCCcEEEEeCCCCCC
Confidence            99888  4455789999999999999999999999999999999755567789999988776   346688889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|+++|+++|++||+||+|.++.++.   ...++   .+..+++|+++||||.||++|+|+||+  +++ 
T Consensus       167 G~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~---~~~s~---~~~~~~~I~~~s~SK~~~~~G~RiG~i--~~~-  237 (373)
T PRK07324        167 GALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG---STPSI---ADLYEKGISTNSMSKTYSLPGIRVGWI--AAN-  237 (373)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC---CCCCh---hhccCCEEEEecchhhcCCccceeEEE--ecC-
Confidence            999999999999999999999999999999998753   12233   233468999999999999999999999  764 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      ++    +++++++.......+++.++|.++..+|+..+
T Consensus       238 ~~----li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~  271 (373)
T PRK07324        238 EE----VIDILRKYRDYTMICAGVFDDMLASLALEHRD  271 (373)
T ss_pred             HH----HHHHHHHHhCcEEecCChHHHHHHHHHHcCHH
Confidence            76    66777777666667888999999888776543

>PRK08637 hypothetical protein; Provisional

Probab=100.00  E-value=1e-36  Score=294.82  Aligned_cols=263  Identities=22%  Similarity=0.287  Sum_probs=202.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCccc---CCcEEEEeccch
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK---EQRVATVQGLSG  160 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~---~~~i~~~~t~gg  160 (363)
                      +++|+++|.+.+ .+.+.+.+.+.++..... ....++|++..|.++||+++++++.+..+ ...   .++|++  |+|+
T Consensus         4 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~i--t~G~   78 (388)
T PRK08637          4 TKYNATIGMATE-KGGPMYLSSLQDLLNDLT-PDEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIV--TNAL   78 (388)
T ss_pred             cceecceeeEec-CCCcchHHHHHHHHHhhc-cccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeE--ccch
Confidence            689999999854 445677788888776643 23448899999999999999999876543 222   257877  9999


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEEecccCCCCCCCHHHHHHHHHc-CCCCcEEEEEcCC
Q 017967          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADIKA-APGGSFILLHGCA  238 (363)
Q Consensus       161 t~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~~~~~~i~~p  238 (363)
                      ++++.++.  ..++.|||.|++++|+|+.|...+. ..|++++.+|+.+ +++++|++.+++.++. .++.++++++|||
T Consensus        79 ~~al~~~~--~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~-~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P  155 (388)
T PRK08637         79 THGLSLVA--DLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFD-EDGGFDTDALKEALQAAYNKGKVIVILNFP  155 (388)
T ss_pred             HHHHHHHH--HHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccC-CCCcCCHHHHHHHHHhhccCCCEEEEEeCC
Confidence            99998884  3446799999999999999998865 6899999999842 3468999999998872 1235678889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHh-----cCCeEEEecCCCCCcCCCCCCchhHH-HHHHhcCCeE--EEEEcCcccccccc
Q 017967          239 HNPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGFASGSLDNDASSV-RLFATRGMEL--LVAQSYSKNLGLYA  310 (363)
Q Consensus       239 ~NPTG~~~s~~~~~~i~~~~~~-----~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~~~~~v--i~~~S~SK~~~l~G  310 (363)
                      |||||.+++.+++++|+++|++     ++++||+||+|.+|.+++.  ...++ ..+.+..+++  ++++||||.|++||
T Consensus       156 ~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~--~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pG  233 (388)
T PRK08637        156 NNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDS--YKESLFAALANLHSNILAVKLDGATKEEFVWG  233 (388)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCc--cchhhHHHhhcccccceEEEeccccccCCCcc
Confidence            9999999999999999999875     8999999999999988642  22232 2333444575  45569999999999


Q ss_pred             ccceEEEEeeC-----ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          311 ERIGAMNVVCS-----SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       311 ~RvG~i~~v~~-----~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +|+||+  +++     +++.++++.+.+....+....++|.+.|.++..+|++
T Consensus       234 lRlG~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~  284 (388)
T PRK08637        234 FRVGFI--TFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNS  284 (388)
T ss_pred             cceEEE--EEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCC
Confidence            999999  654     3665555544333233334568999999999999875

>PRK08175 aminotransferase; Validated

Probab=100.00  E-value=5.5e-37  Score=297.42  Aligned_cols=259  Identities=15%  Similarity=0.151  Sum_probs=201.7

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      +++++|+.|.|. ..    .++.+.+++.+........+|.+..|.++||+++++++...++..++++ +|++  |.|++
T Consensus        29 ~~~i~l~~g~p~-~~----~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~--t~G~~  101 (395)
T PRK08175         29 EDIIDFSMGNPD-GP----TPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIV--TIGSK  101 (395)
T ss_pred             CCeEEcCCCCCC-CC----CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--ccCcH
Confidence            579999999863 21    2344444444433333347899999999999999999987778888876 7988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++.  ..++.|||+|++++|+|+.+...++..|++++.++++++   +.+++.+++.++....+++++++++||||
T Consensus       102 ~~l~~~~--~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~---~~~~~~l~~~l~~~~~~~~~v~i~~p~NP  176 (395)
T PRK08175        102 EGLAHLM--LATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEG---VDFFNELERAIRESYPKPKMMILGFPSNP  176 (395)
T ss_pred             HHHHHHH--HHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccC---CCcHHHHHHHHhhccCCceEEEEeCCCCC
Confidence            9998873  445789999999999999999999999999999998532   33578888888753335677888899999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+....+++++++||||.||+||+|+||+  ++ 
T Consensus       177 tG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~--~~-  251 (395)
T PRK08175        177 TAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGW--KAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFM--VG-  251 (395)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCC--CCcchhcCCCcccCEEEEeeccccccCcchhheee--eC-
Confidence            99999999999999999999999999999999987532  12233332222467899999999999999999999  65 


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      +++    +++++.+.......+++.+.|.++..+|+..++|
T Consensus       252 ~~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  288 (395)
T PRK08175        252 NPE----LVSALARIKSYHDYGTFTPLQVAAIAALEGDQQC  288 (395)
T ss_pred             CHH----HHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHH
Confidence            477    5666666655455677888999888887654443

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=1.5e-36  Score=295.01  Aligned_cols=275  Identities=17%  Similarity=0.170  Sum_probs=214.7

Q ss_pred             hhhHHHHHhcCC--CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcc
Q 017967           70 ILGVSEAFKADT--DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVL  147 (363)
Q Consensus        70 ~~~~~~~~~~~~--~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~  147 (363)
                      |.++...++...  ..++++|+.|.|. ......+++.+.+++.+.+.......|.+..|.+++|+++++++....+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~i~l~~g~p~-~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~   94 (403)
T TIGR01265        16 IRAIVDNLKVKPNPEKPIIPLSHGDPS-VFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKL   94 (403)
T ss_pred             HHHHHHHHHHHHhcCCCeEEeCCCCCC-ccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Confidence            445555554432  2489999999973 1112334677888877766543335798999999999999999987667778


Q ss_pred             cCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC
Q 017967          148 KEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (363)
Q Consensus       148 ~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (363)
                      ++++|++  |+|+++++.++..  .++.+||+|++++|+|..+...++..|++++.+++..++++++|++.+++.+..  
T Consensus        95 ~~~~ii~--t~G~t~al~~~~~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~--  168 (403)
T TIGR01265        95 TADDVVL--TSGCSQAIEICIE--ALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADE--  168 (403)
T ss_pred             CHHHEEE--ecChHHHHHHHHH--HhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCc--
Confidence            8899988  9999999998843  345799999999999999999999999999999885455688999999998863  


Q ss_pred             CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       228 ~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                       +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.+|.+++.  ...++..+ ....++|+++||||.|+
T Consensus       169 -~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~~  244 (403)
T TIGR01265       169 -KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDA--PFIPMASF-ASIVPVLSLGGISKRWV  244 (403)
T ss_pred             -CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC--Cccchhhh-ccCCcEEEEeecccccC
Confidence             456777899999999999999999999999999999999999999988642  23344444 33457999999999999


Q ss_pred             cccccceEEEEeeCCh-hH-HHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          308 LYAERIGAMNVVCSSS-DL-AARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~-~~-~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +||+|+||+  +++++ .. ...+++.+..... ...+++.+.|.++..+|.+
T Consensus       245 ~pGlRiG~~--v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~  294 (403)
T TIGR01265       245 VPGWRLGWI--IIHDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILEN  294 (403)
T ss_pred             CCcceEEEE--EEeCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHh
Confidence            999999999  76543 22 2225555554433 3457899999999888754

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK09265 aminotransferase AlaT; Validated

Probab=100.00  E-value=1.7e-36  Score=294.88  Aligned_cols=261  Identities=17%  Similarity=0.108  Sum_probs=202.8

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++.++|+.|.+... .. .+++.+.+++.+....  ..+|++..|.++||+++|+++.......+++++|++  |+|++
T Consensus        32 ~~~~i~l~~g~p~~~-~~-~~~~~i~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~--t~G~~  105 (404)
T PRK09265         32 GHKILKLNIGNPAPF-GF-EAPDEILRDVIRNLPT--AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYI--GNGVS  105 (404)
T ss_pred             CCCeEEecCCCCCcC-CC-CCCHHHHHHHHHHhhc--CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEE--eCChH
Confidence            348899999986311 11 1344555555443322  367999999999999999998765544678999988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++.  ..++.+||+|++++|+|..+...++..|.+++.++++.++++.+|++.+++.+.   +++++++++|||||
T Consensus       106 ~~l~~~~--~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NP  180 (404)
T PRK09265        106 ELIVMAM--QALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKIT---PRTKAIVIINPNNP  180 (404)
T ss_pred             HHHHHHH--HHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcc---ccceEEEEECCCCC
Confidence            9998883  344679999999999999999999999999999987544567899999999886   34667788999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+ ....++++++||||.||+||+|+||+  +++
T Consensus       181 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~vi~~~S~SK~~~~pGlRiG~~--v~~  255 (404)
T PRK09265        181 TGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGA--VHISIASL-APDLLCVTFNGLSKAYRVAGFRVGWM--VLS  255 (404)
T ss_pred             CCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCC--CcCCHHHc-CCCceEEEEecchhhccCcccceEEE--EEe
Confidence            99999999999999999999999999999999987642  22334333 23347999999999999999999999  653


Q ss_pred             -ChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          322 -SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       322 -~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                       +++..+.+++.+... .....+++.++|.++..+|.+.
T Consensus       256 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~  293 (404)
T PRK09265        256 GPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGY  293 (404)
T ss_pred             CchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCc
Confidence             344444455555443 2344588999999999888654

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.4e-36  Score=289.94  Aligned_cols=247  Identities=16%  Similarity=0.121  Sum_probs=200.7

Q ss_pred             cEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchhHH
Q 017967           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGS  163 (363)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~a  163 (363)
                      +++|+.|.|.     ..+++.+.+++.+...  ...+|.+..|.++||+++++++.+.+++.++++ +|++  |+|++++
T Consensus         2 ~~~~~~g~p~-----~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iii--t~Gs~~a   72 (350)
T TIGR03537         2 LFDFGTGDPK-----EPTPPFIRKALIDAVP--EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLP--SAGSKEA   72 (350)
T ss_pred             eEeccCCCCC-----CCCCHHHHHHHHHHHh--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cCChHHH
Confidence            6789988862     2235677777776643  236798899999999999999988778888887 9988  9999999


Q ss_pred             HHHHHHHHHHhCCC---CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          164 LRLAAALIERYFPG---AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       164 l~l~~~l~~~~~~g---d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      +.++  +..++.+|   |.|+++.|+|+.|...++..|++++.+++++++++.+|++.+++++++   +++++++++|||
T Consensus        73 i~~~--~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~p~N  147 (350)
T TIGR03537        73 IFHF--PLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILE---ETKIVWINYPHN  147 (350)
T ss_pred             HHHH--HHHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhh---ccEEEEEeCCCC
Confidence            9888  34456676   699999999999999999999999999986455677899999998873   466788899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      |||.+++.+++++|+++|+++|++||+||+|.++.++..   ..+...+  ..+++++++||||.+|++|+|+||+  ++
T Consensus       148 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~--~~~~~i~~~s~SK~~g~~GlRiG~~--~~  220 (350)
T TIGR03537       148 PTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP---PHSALEV--GIENVLAFHSLSKRSGMTGYRSGFV--AG  220 (350)
T ss_pred             CcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC---CCchhhc--CcCCEEEEeecccccCCccccceee--ec
Confidence            999999999999999999999999999999999876532   2223222  2468999999999999999999999  65


Q ss_pred             CChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          321 SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      + ++    +++++.........+++.+.|.++...+.
T Consensus       221 ~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~  252 (350)
T TIGR03537       221 D-EK----LISFLRKLRANFGVASPDFVQAAAKAAWS  252 (350)
T ss_pred             C-HH----HHHHHHHHHHhhccCCCHHHHHHHHHHhC
Confidence            4 66    55666655555556777788888866665

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK08363 alanine aminotransferase; Validated

Probab=100.00  E-value=1.9e-36  Score=293.94  Aligned_cols=263  Identities=18%  Similarity=0.177  Sum_probs=209.1

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+|+.|.|...+  ..+++.+.+++.+.+.... ..|++..|.++||+++++++...++..+++++|++  |+|+++
T Consensus        30 ~~~i~l~~g~p~~~~--~~p~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G~~~  104 (398)
T PRK08363         30 IKVIRLNIGDPVKFD--FQPPEHMKEAYCRAIKEGH-NYYGPSEGLPELREAIVKREKRKNGVDITPDDVRV--TAAVTE  104 (398)
T ss_pred             CCeEEEeCCCCCcCC--CCCCHHHHHHHHHHHHcCC-CCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEE--eCCHHH
Confidence            479999999973211  1246777888777664332 56988999999999999999887788889999988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++  +..++.+||.|++++|+|..+...++..|.+++.++..+++++.+|++.+++.+.+   ++++++++||||||
T Consensus       105 al~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~~p~NPt  179 (398)
T PRK08363        105 ALQLI--FGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITE---KTKAIAVINPNNPT  179 (398)
T ss_pred             HHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCc---ceEEEEEECCCCCC
Confidence            99988  44457899999999999999999999999998888432345677899999988763   45677789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee-C
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC-S  321 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~-~  321 (363)
                      |.+++.+++++|+++|+++|+++|+||+|.++.+++   ...++..+ ....++++++||||.|+++|+|+||+  ++ .
T Consensus       180 G~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~---~~~~~~~~-~~~~~vi~~~SfSK~~~~~GlRiG~~--~~~~  253 (398)
T PRK08363        180 GALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEG---KHVSPGSL-TKDVPVIVMNGLSKVYFATGWRLGYI--YFVD  253 (398)
T ss_pred             CcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCC---cccCHHHc-CcCCcEEEEecchhccCCccceEEEE--EEeC
Confidence            999999999999999999999999999999998753   12233333 33458999999999999999999999  65 2


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      +++.++.+.+.+...... ..+++.++|.+++.+|...++|
T Consensus       254 ~~~~~~~l~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~  293 (398)
T PRK08363        254 PEGKLAEVREAIDKLARI-RLCPNTPAQFAAIAGLTGPMDY  293 (398)
T ss_pred             cHHHHHHHHHHHHHHhcc-cccCChHHHHHHHHHHhCChHH
Confidence            366566666665544322 2478999999999888655544

>PRK07568 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-36  Score=294.92  Aligned_cols=256  Identities=18%  Similarity=0.204  Sum_probs=202.8

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++++|+.|.+.     ..+++.+.+++.+...  ...+|++..|.+++|+++++++. .++..+++++|++  |.|+++
T Consensus        30 ~~~i~l~~~~~~-----~~~~~~~~~a~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~~i~~--t~G~~~   99 (397)
T PRK07568         30 IKVYHLNIGQPD-----IKTPEVFFEAIKNYDE--EVLAYSHSQGIPELREAFAKYYK-KWGIDVEPDEILI--TNGGSE   99 (397)
T ss_pred             CCEEEecCCCCC-----CCCCHHHHHHHHHHhc--CCcCcCCCCCCHHHHHHHHHHHH-HhCCCCCcceEEE--cCChHH
Confidence            368999999862     1235677777665542  23679999999999999999987 4677788899988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCC-CHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL-DFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~-d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++.++.  ..++.+||+|++++|+|..+...++..|++++.+++++++++.+ +++.+++.+++   +++++++++||||
T Consensus       100 al~~~~--~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~---~~~~v~i~~p~NP  174 (397)
T PRK07568        100 AILFAM--MAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP---KTKAILISNPGNP  174 (397)
T ss_pred             HHHHHH--HHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc---cceEEEEECCCCC
Confidence            999884  34467999999999999999999999999999999853334443 57889888763   4667788999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++++++|+||+|.+|.+++.  ...+...+....+++++++||||.||++|+|+||+  +++
T Consensus       175 tG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~--~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~--~~~  250 (397)
T PRK07568        175 TGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGL--KYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCL--ISK  250 (397)
T ss_pred             CCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCC--CccChhhcCCCcCCEEEEecchhhccCCCcceEEE--ecC
Confidence            99999999999999999999999999999999987642  23344444333578999999999999999999999  777


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      +++    +++.+.+.... ..+++.+.|.+++.+|+..++|
T Consensus       251 ~~~----~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~  286 (397)
T PRK07568        251 NKE----LIAAAMKLCQA-RLSPPTLEQIGAAALLDTPESY  286 (397)
T ss_pred             CHH----HHHHHHHHhhc-cCCCCcHHHHHHHHHhhCCHHH
Confidence            677    44444433332 3478999999999988755443

>PRK05764 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-36  Score=293.84  Aligned_cols=281  Identities=21%  Similarity=0.259  Sum_probs=221.9

Q ss_pred             cCCCCCCCCCchhhHHHHHhc--CCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia  136 (363)
                      ++++...+++++.++....+.  ...++.++|+.|.|.     ..+++.+.++..+.+.... .+|++..|..+||++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia   78 (393)
T PRK05764          5 SKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPD-----FDTPEHIKEAAIEALDDGK-TKYTPAAGIPELREAIA   78 (393)
T ss_pred             hhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCC-----CCCCHHHHHHHHHHHhcCC-CCcCCCCChHHHHHHHH
Confidence            345666667776555544432  112478999999873     1235677777776664433 56999999999999999


Q ss_pred             HHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCH
Q 017967          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (363)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (363)
                      +++...++..+++++|++  |.|+++++.++  +...+.+||.|++++|+|..+..+++..|++++.++++++.++.+|+
T Consensus        79 ~~~~~~~~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  154 (393)
T PRK05764         79 AKLKRDNGLDYDPSQVIV--TTGAKQALYNA--FMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTV  154 (393)
T ss_pred             HHHHHHhCCCCCHHHEEE--eCCcHHHHHHH--HHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCH
Confidence            999777777778899988  99999998887  44457799999999999999999999999999999986555678999


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH-HhcCCe
Q 017967          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-ATRGME  295 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~~  295 (363)
                      +.+++.+.+   +.+++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++.  ...+...+ .+..++
T Consensus       155 ~~l~~~l~~---~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~~  229 (393)
T PRK05764        155 EQLEAAITP---KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGA--EFTSIASLSPELRDR  229 (393)
T ss_pred             HHHHHhhCc---cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCC--CcccHHHcCCCCcCC
Confidence            999998863   466778899999999999999999999999999999999999999987532  22334333 234568


Q ss_pred             EEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccccc
Q 017967          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQR  361 (363)
Q Consensus       296 vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~  361 (363)
                      +++++||||.+|++|+|+||+  +++ ++    +++++.........+++.+.|.++..+|+..++
T Consensus       230 ~i~~~s~SK~~~~~G~RiG~i--~~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~  288 (393)
T PRK05764        230 TITVNGFSKAYAMTGWRLGYA--AGP-KE----LIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQD  288 (393)
T ss_pred             EEEEecCcccccCccceeEEE--ecC-HH----HHHHHHHHHhhcccCCChHHHHHHHHHHcCChH
Confidence            999999999999999999999  654 66    566666665566778999999999988864333

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=6e-37  Score=280.50  Aligned_cols=229  Identities=18%  Similarity=0.194  Sum_probs=200.5

Q ss_pred             CCCCCCCcchHHHHHHHHHHHhcCC--CCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-
Q 017967          119 NKEYLPIEGLAAFNKVTAELLFGAD--NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-  195 (363)
Q Consensus       119 ~~~Y~~~~G~~~lr~aia~~l~~~~--~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-  195 (363)
                      ...|.+..|++.+|+++|+++....  ...++|+++++  ++|+|++.+.+  ++++.+|||..|||.|.|+++...++ 
T Consensus       114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv--~~G~T~ane~l--~fcLadpgdafLvPtPyY~gfdrdl~~  189 (471)
T KOG0256|consen  114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVV--TNGATSANETL--MFCLADPGDAFLVPTPYYPGFDRDLRW  189 (471)
T ss_pred             HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEE--ecccchhhHHH--HHHhcCCCceeeecCCCCCccccccee
Confidence            3568889999999999999996543  34788999988  99999999999  56678899999999999999988887 


Q ss_pred             hCCCCeEEEecccCCCCCCCHHHHHHHHHcC---CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC
Q 017967          196 DARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ  272 (363)
Q Consensus       196 ~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~  272 (363)
                      +.|+++++|.+..++++.++.+.+|+++.++   ..+.+-+++.||+||-|++++++++..+++++.++|+++|+||+|.
T Consensus       190 rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya  269 (471)
T KOG0256|consen  190 RTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYA  269 (471)
T ss_pred             ccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhc
Confidence            7899999999998899999999999998763   2467788889999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCchhHHHHHHh----cCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHH
Q 017967          273 GFASGSLDNDASSVRLFAT----RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPML  348 (363)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~----~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~  348 (363)
                      +..|+..  .+.++.+...    ..++|++++|+||.||+||+|+|.|  .+-|+.    +.++.+++  ..+..+|+..
T Consensus       270 ~sVF~~~--~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGvi--YS~ne~----VvsaA~km--ssf~~vSs~t  339 (471)
T KOG0256|consen  270 GSVFDKS--EFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVI--YSNNED----VVSAATKM--SSFGLVSSQT  339 (471)
T ss_pred             ccccCcc--CceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEE--EecChH----HHHHHHHH--hhccCCcHHH
Confidence            9999863  5666666643    4579999999999999999999999  888887    77777776  4578999999


Q ss_pred             HHHHhccccccccC
Q 017967          349 LGIQLSSMNGKQRW  362 (363)
Q Consensus       349 q~~~~~~l~~~~~w  362 (363)
                      |+.++++|.+ ++|
T Consensus       340 Q~~la~LLSD-~~f  352 (471)
T KOG0256|consen  340 QYLLASLLSD-EEF  352 (471)
T ss_pred             HHHHHHHhch-HHH
Confidence            9999999988 444

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.1e-36  Score=290.10  Aligned_cols=251  Identities=17%  Similarity=0.239  Sum_probs=196.2

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCCCCCcchHHHHHHHHHHHhcCC--CCcccCCcEEEEeccc
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGAD--NSVLKEQRVATVQGLS  159 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~--~~~~~~~~i~~~~t~g  159 (363)
                      +..++|+.|++.     ..+++.+.+++.+...... ...| +..|.++||+++|+|+.+.+  +..+++++|++  |+|
T Consensus        28 ~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~i--t~G   99 (374)
T PRK02610         28 IQLDRLDTNEFP-----YDLPPDLKQKLAWLYQQGIESNRY-PDGGHEALKQAIAEYVNESAAGSSQITPANISV--GNG   99 (374)
T ss_pred             cceeEecCCCCC-----CCCCHHHHHHHHHHHhhcccccCC-CCCchHHHHHHHHHHhCccccccCCCCHHHEEE--cCC
Confidence            358999999862     2245677777665543321 2467 55799999999999987665  46688999988  999


Q ss_pred             hhHHHHHHHHHHHHhCCCC-EEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC-CCCcEEEEEcC
Q 017967          160 GTGSLRLAAALIERYFPGA-KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLHGC  237 (363)
Q Consensus       160 gt~al~l~~~l~~~~~~gd-~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~~~~i~~  237 (363)
                      +++++.++  +...+.+|| .|++++|+|..|...++..|++++.++++ ++++++|++.+++.++.. .+++++++++|
T Consensus       100 a~~al~~~--~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~  176 (374)
T PRK02610        100 SDELIRSL--LIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRD-PETFEIDLAAAQSAIEQTQNPPVRVVFVVH  176 (374)
T ss_pred             hHHHHHHH--HHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCC-cccCCCCHHHHHHHHHhhcCCCceEEEEeC
Confidence            99998866  344566786 89999999999999999999999999974 345899999999988631 13567788889


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       238 p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                      ||||||.+++.+++++|++++  ++++||+||+|.+|.+..      ....+ ...+++|+++||||.||++|+|+||+ 
T Consensus       177 P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~------~~~~~-~~~~~~ivi~SfSK~~g~~GlRiG~~-  246 (374)
T PRK02610        177 PNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT------LVGEL-AQHPNWVILRTFSKAFRLAAHRVGYA-  246 (374)
T ss_pred             CCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCccc------hHHHH-hcCCCEEEEEecchhccCcccceeee-
Confidence            999999999999999999876  499999999999986421      12222 34468999999999999999999999 


Q ss_pred             EeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          318 VVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       318 ~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       +++ ++    +++.+.+...  ..+++.++|.++..+|++.+.|
T Consensus       247 -v~~-~~----l~~~l~~~~~--~~~~~~~~q~a~~~~l~~~~~~  283 (374)
T PRK02610        247 -IGH-PE----LIAVLEKVRL--PYNLPSFSQLAAQLALEHRQEL  283 (374)
T ss_pred             -ecC-HH----HHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHH
Confidence             765 66    5666665542  3467899999999888765544

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-36  Score=272.42  Aligned_cols=261  Identities=17%  Similarity=0.173  Sum_probs=218.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+|.|+.|.|.. .+.....+...+|+.+.++.+-..+|+|..|....|+++|+|+.+...-.+++++|++  |.|.++|
T Consensus        62 ~iipl~~GDPsv-~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~l--tsGC~qA  138 (447)
T KOG0259|consen   62 PILPLGHGDPSV-YPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVL--TSGCSQA  138 (447)
T ss_pred             eeccCCCCCCCc-cccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEE--eccchHH
Confidence            689999999843 3334455677788877776666689999999999999999998888777888999988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                      ++++  +..+.+||..||+|.|+|+-|...+...|++++.|++..+.+|.+|++.+|..+.   ++++.+++.|||||+|
T Consensus       139 Ie~~--i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D---ENT~AivviNP~NPcG  213 (447)
T KOG0259|consen  139 IELA--ISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD---ENTVAIVVINPNNPCG  213 (447)
T ss_pred             HHHH--HHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhc---cCeeEEEEeCCCCCCc
Confidence            9999  4445689999999999999999999999999999999888999999999999887   4688999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      .+++.+.+++|+++|++++++||.||+|..+.|++  .++.++..| ..--.|+.++|+||-|=.||||+||+  +..|+
T Consensus       214 nVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~--~pfvpmg~f-ssiVPVitlggisKrW~VPGWRlGWi--~~hD~  288 (447)
T KOG0259|consen  214 NVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD--KPFVPMGKF-SSIVPVITLGGISKRWIVPGWRLGWI--ALHDP  288 (447)
T ss_pred             ccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC--CCccchhhc-cccCceEeecccccccccCCceeeeE--EEecc
Confidence            99999999999999999999999999999999987  356666666 34468999999999999999999999  66554


Q ss_pred             hHHH---HHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          324 DLAA---RVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       324 ~~~~---~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      .-+-   .+++.+.... ....+++.+-|.++-.+|+.
T Consensus       289 ~gvf~~~~~~q~~~~~~-~~~~~p~TiiQ~AlP~IL~k  325 (447)
T KOG0259|consen  289 RGVFRDTKVVQGIKNFL-DIIPGPATIIQGALPDILEK  325 (447)
T ss_pred             cccccchHHHHHHHHHH-hccCCccHhHHHHhHHHHHh
Confidence            4211   1223344333 24458999999999877754

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=1.7e-36  Score=290.65  Aligned_cols=262  Identities=20%  Similarity=0.230  Sum_probs=208.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHH-HHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      ++|+|+.|.+.....+ ++++.+.++..+ .........|++..|.++||+++|+++.+.++..++++ +|++  +.|+.
T Consensus         2 ~~I~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~--~~G~~   78 (363)
T PF00155_consen    2 DVINLGSNAPLLLSQN-PPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILV--TSGAQ   78 (363)
T ss_dssp             TEEESSSSSTSSTTSS-HHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEE--ESHHH
T ss_pred             CEEEEECCCCCCcccc-cchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEE--ecccc
Confidence            5899999998654444 345555555554 33333448899999999999999999986777888888 9988  88888


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCC---CcEEEEEcCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFILLHGCA  238 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~---~~~~~~i~~p  238 (363)
                      +++.++..++. ..+||+|++++|+|+.+...++..|++++.++++.++++++|++.|++.+++.+.   +..++++++|
T Consensus        79 ~~~~~~~~~~~-~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p  157 (363)
T PF00155_consen   79 AALFLLLRLLK-INPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNP  157 (363)
T ss_dssp             HHHHHHHHHHH-SSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESS
T ss_pred             cchhhhhhccc-ccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccc
Confidence            88777733221 4599999999999999999999999999999987677899999999999986321   3568888999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEE
Q 017967          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (363)
Q Consensus       239 ~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~  318 (363)
                      |||||.+++.+++++|+++|+++|++||+||+|.++.+++.  +..+.....+...++++++||||.||++|+|+||+  
T Consensus       158 ~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i--  233 (363)
T PF00155_consen  158 NNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDP--DFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYI--  233 (363)
T ss_dssp             BTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSS--HTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEE--
T ss_pred             ccccccccccccccchhhhhcccccceeeeeceeccccCCC--ccCcccccccccccceeeeeccccccccccccccc--
Confidence            99999999999999999999999999999999999998752  33333444566667999999999999999999999  


Q ss_pred             eeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          319 VCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       319 v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      ++ +++    ++++++........  +.+.|.++..++.+.+
T Consensus       234 ~~-~~~----~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~  268 (363)
T PF00155_consen  234 VA-PPE----LIERLRRFQRSGLS--SSPMQAAAAAALSDPE  268 (363)
T ss_dssp             EE-EHH----HHHHHHHHHHHTTS--SHHHHHHHHHHHHHHH
T ss_pred             cc-hhh----hhhhhhhccccccc--cchhhHHHHHhhhccc
Confidence            76 466    66667666543333  8888988888776654

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=100.00  E-value=4.9e-36  Score=287.75  Aligned_cols=262  Identities=15%  Similarity=0.098  Sum_probs=199.8

Q ss_pred             cCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (363)
                      +++++..+...+.++........ .++++|+.|.|.     ...++.+.+++......   .+|.+..|.++||++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~p~-----~~~~~~~~~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~   74 (364)
T PRK07865          4 SARLPDFPWDTLAPAKATAAAHP-DGIVDLSVGTPV-----DPVPPVIQEALAAAADA---PGYPTTAGTPELREAIVGW   74 (364)
T ss_pred             cccCCCccHHHHHHHHHHHHhcC-CCEEEcCCCCCC-----CCCCHHHHHHHHHHHhh---CCCCCccCCHHHHHHHHHH
Confidence            44566666556666555554433 368999999863     12246677776554322   5798899999999999999


Q ss_pred             HhcCCCCc-ccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCH
Q 017967          139 LFGADNSV-LKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (363)
Q Consensus       139 l~~~~~~~-~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (363)
                      +.+.++.. +++++|++  |+|+++++.++..  .+ +.+||.|++++|+|+.|...++..|++++.++.         +
T Consensus        75 l~~~~~~~~~~~~~I~i--t~G~~~~i~~~~~--~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~  141 (364)
T PRK07865         75 LARRRGVTGLDPAAVLP--VIGSKELVAWLPT--LLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---------L  141 (364)
T ss_pred             HHHHcCCCCCCcccEEE--ccChHHHHHHHHH--HHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------h
Confidence            98887876 88999988  9999999988733  33 579999999999999999999999999888742         2


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH---HhcC
Q 017967          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF---ATRG  293 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~---~~~~  293 (363)
                      +.+++      +++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++.   ..+....   ....
T Consensus       142 ~~l~~------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~~  212 (364)
T PRK07865        142 TELGP------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAE---PVSILDPRVCGGDH  212 (364)
T ss_pred             hhCCc------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC---CCccccccccCCcc
Confidence            22221      2456777789999999999999999999999999999999999999987531   1111100   0123


Q ss_pred             CeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       294 ~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +++++++||||.||++|+|+||+  +++ ++    ++++++........+++.+.|.++..+|.+
T Consensus       213 ~~~i~~~S~SK~~~~~GlRiG~i--~~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  270 (364)
T PRK07865        213 TGLLAVHSLSKQSNLAGYRAGFV--AGD-PA----LVAELLEVRKHAGMMVPAPVQAAMVAALGD  270 (364)
T ss_pred             ceEEEEeechhccCCCceeeEEE--ecC-HH----HHHHHHHHHHhcCCCcCHHHHHHHHHHhCC
Confidence            68999999999999999999999  665 66    556665555555568899999999888865

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=3.8e-36  Score=288.33  Aligned_cols=242  Identities=14%  Similarity=0.144  Sum_probs=191.7

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .+.|+|+.|++.     ..+++.+.+++...... . ..| |..|.++||+++|+++.      +++++|++  |+|+++
T Consensus        29 ~~~i~l~~nen~-----~~~~~~v~~a~~~~~~~-~-~~Y-p~~g~~~Lr~aia~~~~------~~~~~I~v--t~Gs~e   92 (366)
T PRK01533         29 HSFVKLASNENP-----FGCSPRVLDELQKSWLD-H-ALY-PDGGATTLRQTIANKLH------VKMEQVLC--GSGLDE   92 (366)
T ss_pred             CceEEeCCCCCC-----CCCCHHHHHHHHHHHHh-c-CcC-CCCCHHHHHHHHHHHhC------CCcceEEE--CCCHHH
Confidence            478999999862     22456666666554322 1 335 77899999999999972      45899988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++.  ..++.+||.|++++|+|+.|...++..|++++.++++   ++++|++.+++.+++   +++++++|||||||
T Consensus        93 ~i~~~~--~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~~~~~~---~~~~v~i~~P~NPT  164 (366)
T PRK01533         93 VIQIIS--RAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEISSVVDN---DTKIVWICNPNNPT  164 (366)
T ss_pred             HHHHHH--HHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHHHHhCc---CCcEEEEeCCCCCC
Confidence            999884  4446799999999999999999999999999999983   457999999998863   45677889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|+++|++++ ++|+||+|.+|.+.+.   ..+.....+..+++|+++||||.||++|+|+||+  +++ 
T Consensus       165 G~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~---~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~--i~~-  237 (366)
T PRK01533        165 GTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD---FPETLPLLEKHKNILVLRTFSKAYGLASFRVGYA--VGH-  237 (366)
T ss_pred             CCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc---CcchhHHhccCCCEEEEeCchHHhcChHHHHhHH--hCC-
Confidence            99999999999999998766 5777999999886521   1222233455679999999999999999999999  765 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ++    +++.+.+...  ..+++.++|.++..+|++ ++|
T Consensus       238 ~~----~~~~l~~~~~--~~~~~~~~q~aa~~~l~~-~~~  270 (366)
T PRK01533        238 EE----LIEKLNVVRL--PFNVSSLAQKAATIAFGD-DEF  270 (366)
T ss_pred             HH----HHHHHHHhcC--CCCcCHHHHHHHHHHhCC-HHH
Confidence            77    5666665542  358999999999999865 444

>PRK09275 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-36  Score=296.81  Aligned_cols=245  Identities=13%  Similarity=0.078  Sum_probs=187.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcC-CCCcc-c--CCcEEEEeccc
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA-DNSVL-K--EQRVATVQGLS  159 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~-~~~~~-~--~~~i~~~~t~g  159 (363)
                      +.|+|++|+| +.+.    ++.+.++...+. .   .+|+++.|.+++|+++++++..+ .+... .  +++|++  |.|
T Consensus       101 ~~i~l~~g~p-~~~~----~~~v~e~~~~~~-~---~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~v--T~G  169 (527)
T PRK09275        101 DAVSYVRDQL-GFDA----DEFVYELVDGII-G---DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFA--VEG  169 (527)
T ss_pred             HHHhhcCCCC-CCCC----CHHHHHHHHHHh-c---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eCC
Confidence            5799999997 3322    445555443332 2   35999999999999999966543 22221 2  348988  999


Q ss_pred             hhHHHHHHHHHH---HHhCCCCEEEEcCCCCcchHHHHhhCC--CCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEE
Q 017967          160 GTGSLRLAAALI---ERYFPGAKVLISSPTWGNHKNIFNDAR--VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL  234 (363)
Q Consensus       160 gt~al~l~~~l~---~~~~~gd~Vlv~~P~y~~~~~~~~~~G--~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~  234 (363)
                      +++++.++...+   .++.|||+|++++|+|+.|...++..|  ++++.++.+++++|.+|++.++++++   +++++++
T Consensus       170 a~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~---~~tkai~  246 (527)
T PRK09275        170 GTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRD---PSIKALF  246 (527)
T ss_pred             HHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC---CCCCEEE
Confidence            999998884432   246799999999999999999988765  45566665445578999999998775   3567888


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHHHHHh--cCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccccc
Q 017967          235 HGCAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (363)
Q Consensus       235 i~~p~NPTG~~~s~~~~~~i~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~R  312 (363)
                      ++|||||||.+++.+++++|+++|++  ++++||+||+|.+|.+.     ..+....  ..+++|+++||||.||++|||
T Consensus       247 l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~s~~~~--~~~~~I~v~SfSK~f~mtG~R  319 (527)
T PRK09275        247 LVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD-----FRSLFAV--LPYNTILVYSFSKYFGATGWR  319 (527)
T ss_pred             EeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc-----ccCHHHh--CCCCEEEEeehhhhccCcHhH
Confidence            89999999999999999999999965  49999999999998752     2233222  347999999999999999999


Q ss_pred             ceEEEEeeCChhHHHHHHHH--------------------------------HHhhhccccCCCchHHHHH
Q 017967          313 IGAMNVVCSSSDLAARVKSQ--------------------------------LKRLARPMYSNPPPMLLGI  351 (363)
Q Consensus       313 vG~i~~v~~~~~~~~~~~~~--------------------------------l~~~~~~~~~~~s~~~q~~  351 (363)
                      +||+  +++.++.++++++.                                .+++...+..++|.+.|.+
T Consensus       320 lG~i--~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a  388 (527)
T PRK09275        320 LGVI--ALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQ  388 (527)
T ss_pred             Hhhh--hcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHH
Confidence            9999  78765444444433                                3677778888999999997

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=100.00  E-value=1.6e-35  Score=287.86  Aligned_cols=252  Identities=17%  Similarity=0.160  Sum_probs=187.3

Q ss_pred             CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHcc----CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      +.+++++|+.|++.     ..+++.+.+++...+..    ....+|.|..|.++||+++|+++.+.   .+++++|++  
T Consensus        31 ~~~~~i~l~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d~I~i--  100 (402)
T TIGR03542        31 PSADIIRLGIGDTT-----QPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPEEIFI--  100 (402)
T ss_pred             CCCCeEEcCCCCCC-----CCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHHHEEE--
Confidence            34589999999862     22355666666555432    12256989999999999999986443   267899988  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC-----------CeEEEecccCCCCCCCHHHHHHHHHc
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV-----------PWSEYRYYDPKTVGLDFEGMIADIKA  225 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~-----------~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (363)
                      |+|+++++.++   ..++.+||.|++++|+|..|...++..|+           +++.++++++.++.+|++.      .
T Consensus       101 t~Ga~~al~~l---~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~  171 (402)
T TIGR03542       101 SDGAKCDVFRL---QSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE------E  171 (402)
T ss_pred             CCCcHHHHHHH---HHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc------c
Confidence            99999998876   34467999999999999999999999999           9999988544445444321      1


Q ss_pred             CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccc
Q 017967          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (363)
Q Consensus       226 ~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  305 (363)
                        +++++++++|||||||.+++.+++++|+++|++++++||+||+|.+|.+++.  ...++..+....+++++++||||.
T Consensus       172 --~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~vi~~~SfSK~  247 (402)
T TIGR03542       172 --PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPS--LPHSIFEIPGAKECAIEFRSFSKT  247 (402)
T ss_pred             --CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCC--CCcchhhCCCCcccEEEEecCccc
Confidence              2456777789999999999999999999999999999999999999987531  112332222223679999999999


Q ss_pred             cccccccceEEEEeeCChhHH----HHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          306 LGLYAERIGAMNVVCSSSDLA----ARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       306 ~~l~G~RvG~i~~v~~~~~~~----~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ||+||+|+||+  +++ ++.+    +.+.+.........+.+++.++|.++..++.+
T Consensus       248 ~g~pGlRiG~~--i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~  301 (402)
T TIGR03542       248 AGFTGVRLGWT--VVP-KELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAG  301 (402)
T ss_pred             cCCCCcceEEE--Eec-HHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcC
Confidence            99999999999  776 4432    11223332222234557889999998887764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=7.5e-35  Score=278.43  Aligned_cols=253  Identities=17%  Similarity=0.153  Sum_probs=194.4

Q ss_pred             hhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC
Q 017967           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (363)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~  149 (363)
                      +.++.+...... ++.++|+.|++.  .+   +++.+.+++.+....  ..+|+ ..+.++||+++|+++.      +++
T Consensus         7 ~~~~~~~~~~~~-~~~~~l~~~~~~--~~---~p~~~~~a~~~~~~~--~~~Y~-~~~~~~lr~~ia~~~~------~~~   71 (354)
T PRK06358          7 INEIAREKGLTK-NMILDFSANINP--LG---VPESLKQAITENLDK--LVEYP-DPDYLELRKRIASFEQ------LDL   71 (354)
T ss_pred             HHHHHHHhCCCc-cceEEecCCCCC--CC---CCHHHHHHHHHHHHh--hhcCC-CccHHHHHHHHHHHhC------CCh
Confidence            444444443322 357999998853  11   246677776665432  25684 4578999999999972      468


Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      ++|++  |+|+++++.++..   .+.+ +.|++++|+|+.|...++..|++++.+++++++++.+| +.+.+.+..   +
T Consensus        72 ~~i~i--t~Ga~~~l~~~~~---~~~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~---~  141 (354)
T PRK06358         72 ENVIL--GNGATELIFNIVK---VTKP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKE---E  141 (354)
T ss_pred             hhEEE--CCCHHHHHHHHHH---HhCC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhcc---C
Confidence            99988  9999999988843   2444 68999999999999999999999999998655567888 666665542   3


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      +++++++|||||||.+++.+++++|+++|++++++||+||+|.+|.+++.   ..+.....+..+++|+++||||.||++
T Consensus       142 ~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~---~~~~~~~~~~~~~vi~~~S~SK~~gl~  218 (354)
T PRK06358        142 IDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENE---TISMINYLENFKNLIIIRAFTKFFAIP  218 (354)
T ss_pred             CCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCcc---chhHHHhccCCCCEEEEEechhhccCc
Confidence            56777799999999999999999999999999999999999999997642   223333345568999999999999999


Q ss_pred             cccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       310 G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |+|+||+  ++++++    +++.+.....  ..+++.++|.++..+|++
T Consensus       219 G~RiG~l--v~~~~~----~~~~~~~~~~--~~~~~~~~q~~~~~~l~~  259 (354)
T PRK06358        219 GLRLGYG--LTSNKN----LAEKLLQMRE--PWSINTFADLAGQTLLDD  259 (354)
T ss_pred             chhheee--ecCCHH----HHHHHHHhCC--CCcchHHHHHHHHHHhcc
Confidence            9999999  777677    5555655543  357899999999888864

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=100.00  E-value=1.5e-35  Score=290.52  Aligned_cols=243  Identities=16%  Similarity=0.159  Sum_probs=189.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ..++|+.|.|.     ...++.+.+++.+....  ...|++..|.++||+++++++....+   .+++|++  |+|++++
T Consensus        86 ~~i~L~~g~p~-----~~~~p~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iii--t~G~~~a  153 (431)
T PRK15481         86 PLHDLAGGNPD-----PQRLPDLSRYFARLSRT--PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDL--TSGAIDA  153 (431)
T ss_pred             hhhhhhcCCCC-----hhHhHHHHHHHHHhhhh--hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEE--ecCcHHH
Confidence            57899998762     11234466665554322  25799999999999999999765322   2468988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                      +.++  +..++.|||.|++++|+|+.|...++..|++++.+|+++   .++|++.++++++.  +.+.++++||||||||
T Consensus       154 l~~~--~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~---~g~~~~~l~~~~~~--~~k~i~~~p~p~NPTG  226 (431)
T PRK15481        154 IERL--LCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDA---EGMQPEKLERALAQ--GARAVILTPRAHNPTG  226 (431)
T ss_pred             HHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCC---CCCCHHHHHHHHhc--CCCEEEECCCCCCCCC
Confidence            9988  445578999999999999999999999999999999843   36899999998874  3344555459999999


Q ss_pred             CCCCHHHHHHHHHHHHhc-CCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          244 IDPTPEQWEKIADVIQEK-NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      .+++.+++++|+++|+++ +++||+||+|.+|.+++.    .+.  +....+++++++||||.|+ ||+|+||+  +++ 
T Consensus       227 ~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~----~~~--~~~~~~~vi~~~SfSK~~~-~GlRiG~~--i~~-  296 (431)
T PRK15481        227 CSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY----HSV--IPQTTQRWALIRSVSKALG-PDLRLAFV--ASD-  296 (431)
T ss_pred             ccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC----CCC--CcCCCCCEEEEeeeccccC-CCceeEEE--eCC-
Confidence            999999999999999999 999999999999986421    111  1113468999999999999 99999999  765 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ++    +++.+.........++|.++|.+++.+|++.
T Consensus       297 ~~----~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~  329 (431)
T PRK15481        297 SA----TSARLRLRLNSGTQWVSHLLQDLVYACLTDP  329 (431)
T ss_pred             HH----HHHHHHHHHhccccCCCHHHHHHHHHHHhCc
Confidence            66    4455544434444578999999999999765

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=4e-35  Score=281.85  Aligned_cols=247  Identities=17%  Similarity=0.163  Sum_probs=195.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc--CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      ..|+|+.|++.     ..+++.+.+++.+.+..  .....| +..|.++||+++|+|+.+.++..+++++|++  |+|++
T Consensus        27 ~~i~l~~~~~~-----~~~~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~~~I~i--t~G~~   98 (368)
T PRK03317         27 VPVRLNTNENP-----YPPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTVENVWA--ANGSN   98 (368)
T ss_pred             ceeEecCCCCC-----CCCCHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCChhhEEE--CCCHH
Confidence            56999999862     12356666666654421  123567 5578999999999999888888899999988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++  +..++.|||.|+++.|+|..|...++..|++++.++.  .+++++|++.+++++..  .+.++++++|||||
T Consensus        99 ~~l~~~--~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~~~~--~~~~~i~l~~p~NP  172 (368)
T PRK03317         99 EILQQL--LQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPR--AADFTLDVDAAVAAIAE--HRPDVVFLTSPNNP  172 (368)
T ss_pred             HHHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEccc--CCCCCCCHHHHHHHHhc--cCCCEEEEeCCCCC
Confidence            999988  4444679999999999999999999999999999886  34689999999999874  23456777999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|   ++++|+||+|.+|.+.+.    .+...+.+..+++++++||||.||++|+|+||+  +++
T Consensus       173 tG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~----~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~--~~~  243 (368)
T PRK03317        173 TGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT----PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYL--AAA  243 (368)
T ss_pred             CCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC----cCHHHHHHhCCCEEEEEechhhhccchhhhhhh--hCC
Confidence            99999999999997776   699999999999976531    122233344568999999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                       ++    +++.+.....  .++++.++|.++..+|+..+
T Consensus       244 -~~----~~~~l~~~~~--~~~~s~~~~~a~~~~l~~~~  275 (368)
T PRK03317        244 -PA----VVDALRLVRL--PYHLSAVTQAAARAALRHAD  275 (368)
T ss_pred             -HH----HHHHHHhcCC--CCCCCHHHHHHHHHHhhCHH
Confidence             66    5565655432  34788999999988887544

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.3e-34  Score=277.19  Aligned_cols=250  Identities=19%  Similarity=0.211  Sum_probs=190.5

Q ss_pred             hhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC
Q 017967           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (363)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~  149 (363)
                      +.++.+.+... ..++|+|+.|++.     ..+++.+.+++.+....  ..+|+ ..|.++||+++|+++.      +++
T Consensus        18 ~~~~~~~~~~~-~~~~i~l~~~~~~-----~~~~~~~~~~~~~~~~~--~~~Y~-~~~~~~lr~~ia~~~~------~~~   82 (357)
T PRK14809         18 IEEVARELGLD-PDDLVKLSSNENP-----HGPSPAAVEAIREAAER--VHSYP-KASHADLTAALADRWD------VSP   82 (357)
T ss_pred             HHHHHHHhCCC-ccceeEecCCCCC-----CCCCHHHHHHHHHHHhh--hhcCC-CCCHHHHHHHHHHHhC------CCc
Confidence            33444444332 2379999999862     12344555665554432  25684 5789999999999962      468


Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      ++|++  |+|+++++.++.  ..++.|||.|++++|+|..|...++..|.+++.++++.++++.++++.+++...    +
T Consensus        83 ~~I~i--t~G~~~al~~~~--~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~----~  154 (357)
T PRK14809         83 EQVWL--ANGGDGALDYLA--RAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD----G  154 (357)
T ss_pred             ceEEE--CCCHHHHHHHHH--HHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc----C
Confidence            99988  999999998883  444679999999999999999888899999999998654567778887776542    3


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ++++++||||||||.+++.+++++|+++|++ +++||+||+|.+|.+..      +.....+..+++++++||||.||++
T Consensus       155 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~------~~~~~~~~~~~vi~~~SfSK~~~~~  227 (357)
T PRK14809        155 ERIVYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP------SAVALVEERDDVAVLRTFSKAYGLA  227 (357)
T ss_pred             CcEEEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc------hhHHHHhhCCCEEEEecchhHhcCc
Confidence            4577778999999999999999999999875 78999999999998642      1122234567999999999999999


Q ss_pred             cccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       310 G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |+|+||+  +++ ++    +++.+.+..  ...+++.++|.++..+|.+
T Consensus       228 GlRiG~~--~~~-~~----~~~~~~~~~--~~~~~~~~~~~~a~~~l~~  267 (357)
T PRK14809        228 GLRLGYA--VVP-EE----WADAYARVN--TPFAASELACRAGLAALDD  267 (357)
T ss_pred             chhheee--ecC-HH----HHHHHHHhC--CCCCCCHHHHHHHHHHhCC
Confidence            9999999  776 55    455555543  2457889999999888764

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-34  Score=264.42  Aligned_cols=262  Identities=17%  Similarity=0.147  Sum_probs=220.4

Q ss_pred             CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      ++++++.|.+.+- |..    .++.+.+++++-.+.+. ++|+  .+..++.+++++|..++++..+.++.|++  +.|.
T Consensus        23 g~~DvlPmWVADM-Df~----~pp~i~~Al~~rvdhGv-fGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~--~p~V   92 (388)
T COG1168          23 GNEDVLPMWVADM-DFP----TPPEIIEALRERVDHGV-FGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVF--VPGV   92 (388)
T ss_pred             CCCCcceeeeecc-cCC----CCHHHHHHHHHHHhcCC-CCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEE--cCcc
Confidence            4468999999884 433    45677888777776665 7885  67788999999999999999999999988  9999


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEeccc-CCCCCCCHHHHHHHHHcCCCCcEEEEEcCCC
Q 017967          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (363)
Q Consensus       161 t~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~  239 (363)
                      --++.++  +..+.+|||.|+|..|.|+++....+..|.+++..|+.. +..+.+|++.||+++.+  .+++++++||||
T Consensus        93 Vpgi~~~--I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~--~~vkl~iLCnPH  168 (388)
T COG1168          93 VPGISLA--IRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVD--ERVKLFILCNPH  168 (388)
T ss_pred             hHhHHHH--HHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhc--CCccEEEEeCCC
Confidence            9998888  444467999999999999999999999999999999753 34577799999999985  456899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH-HhcCCeEEEEEcCccccccccccceEEEE
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-ATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~S~SK~~~l~G~RvG~i~~  318 (363)
                      ||||.+++.+|+++|.++|++||+.+|+||+++++.+.+.  .+.++..+ ....++++.+.|-||+|+++|++.+++  
T Consensus       169 NP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~--~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~--  244 (388)
T COG1168         169 NPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH--KHIPFASLSERFADNSITLTSASKTFNLAGLKCAYI--  244 (388)
T ss_pred             CCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC--CccchhhcChhhhcceEEEeeccccccchhhhheeE--
Confidence            9999999999999999999999999999999999999863  23333322 123489999999999999999999999  


Q ss_pred             eeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccCC
Q 017967          319 VCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRWR  363 (363)
Q Consensus       319 v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w~  363 (363)
                      |.+|++..+++.+++.+   ....++|.++..+...+++..+.|+
T Consensus       245 Ii~n~~lr~~~~~~l~~---~~~~~~n~lg~~A~~aAY~~G~~WL  286 (388)
T COG1168         245 IISNRELRAKFLKRLKR---NGLHGPSALGIIATEAAYNQGEPWL  286 (388)
T ss_pred             EecCHHHHHHHHHHHHH---hcCCCCchHHHHHHHHHHHhchHHH
Confidence            99999866667666653   4556899999999999999999995

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=100.00  E-value=4.2e-35  Score=288.48  Aligned_cols=256  Identities=11%  Similarity=0.071  Sum_probs=185.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHH-HHhcCCCCc-ccCC--cEEEEeccc
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE-LLFGADNSV-LKEQ--RVATVQGLS  159 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~-~l~~~~~~~-~~~~--~i~~~~t~g  159 (363)
                      +.|+|++|++. .+    +.+.+.+....+. .   .+|+++.|..++++++++ |+.+..+.. ..++  +|++  |.|
T Consensus        95 ~~i~l~~g~p~-~~----~~~~~~~~~~~~~-~---~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~i--t~G  163 (521)
T TIGR03801        95 DIISYVIDQLG-FD----PDAFLYEMCDGII-G---DNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFA--VEG  163 (521)
T ss_pred             HHHhhcCCCCC-CC----CCHHHHHHHHHhh-c---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eCC
Confidence            57999999972 22    2334433333322 2   358777788888887775 554443332 2333  8988  999


Q ss_pred             hhHHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHHhhC--CCCeEEEecccCCC-----CCCCHHHHHHHHHcCCCC
Q 017967          160 GTGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFNDA--RVPWSEYRYYDPKT-----VGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       160 gt~al~l~~~l~~---~~~~gd~Vlv~~P~y~~~~~~~~~~--G~~~~~v~~~~~~~-----~~~d~~~l~~~l~~~~~~  229 (363)
                      +++++.++...+.   ++.|||+|+++.|+|+.|..+++..  |++++.++.+++++     |.+|++.+++++.   ++
T Consensus       164 at~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~---~~  240 (521)
T TIGR03801       164 GTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD---PS  240 (521)
T ss_pred             HHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC---CC
Confidence            9999988744321   4679999999999999999987754  77888888754333     8899999998765   35


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhc--CCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                      +++++++|||||||.+++.+++++|+++|+++  +++||+||+|.+|.+.     +.++...  ..+++|+++||||.||
T Consensus       241 ~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-----~~sl~~~--~~~~vI~v~SfSK~fg  313 (521)
T TIGR03801       241 IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD-----FRSLFAE--LPYNTIGVYSFSKYFG  313 (521)
T ss_pred             CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc-----ccchhhh--CCCCEEEEEcchhhcc
Confidence            67888899999999999999999999999986  8999999999998752     2233222  3468999999999999


Q ss_pred             cccccceEEEEeeCChhHHHHHH--------------------------------HHHHhhhccccCCCchHHHH-----
Q 017967          308 LYAERIGAMNVVCSSSDLAARVK--------------------------------SQLKRLARPMYSNPPPMLLG-----  350 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~~~~~~~--------------------------------~~l~~~~~~~~~~~s~~~q~-----  350 (363)
                      ++|||+||+  ++++++..++++                                ...+.+...+..++|.+.|.     
T Consensus       314 ~~G~RlG~i--~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~  391 (521)
T TIGR03801       314 ATGWRLGTI--ALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALF  391 (521)
T ss_pred             Cchhhhhhh--hcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence            999999999  777554333333                                33355666677788888887     


Q ss_pred             HHhccccccccC
Q 017967          351 IQLSSMNGKQRW  362 (363)
Q Consensus       351 ~~~~~l~~~~~w  362 (363)
                      ++..+|+..++|
T Consensus       392 a~~all~~~~~y  403 (521)
T TIGR03801       392 SLFALMDKENAY  403 (521)
T ss_pred             HHHHHhccchhH
Confidence            344555544443

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=100.00  E-value=2.3e-34  Score=280.97  Aligned_cols=260  Identities=18%  Similarity=0.121  Sum_probs=192.2

Q ss_pred             HHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC----CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCc
Q 017967           76 AFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR  151 (363)
Q Consensus        76 ~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~  151 (363)
                      ..+...+++.|+|+.|.|.   ..+.+.+.+.+++...+...    ...+|++..|.++||+++|+++...++..+++++
T Consensus        23 ~~~~~~~~~~i~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~   99 (416)
T PRK09440         23 LNDGLRTPGAIMLGGGNPA---HIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQN   99 (416)
T ss_pred             HHHHhcCCCceeccCCCCC---ccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhh
Confidence            3333444688999999863   22333456667666655321    2357999999999999999999887888889999


Q ss_pred             EEEEeccchhHHHHHHHHHHHHh-----CCCCEEEE-cCCCCcchHHHHhhCCC----CeEEEecccCC-CCCCCHHHHH
Q 017967          152 VATVQGLSGTGSLRLAAALIERY-----FPGAKVLI-SSPTWGNHKNIFNDARV----PWSEYRYYDPK-TVGLDFEGMI  220 (363)
Q Consensus       152 i~~~~t~ggt~al~l~~~l~~~~-----~~gd~Vlv-~~P~y~~~~~~~~~~G~----~~~~v~~~~~~-~~~~d~~~l~  220 (363)
                      |++  |+|+++++.++..+  ++     .+||.|++ ++|+|+.|...+...|.    ....+++.++. .+++|++.|+
T Consensus       100 I~i--t~Ga~~al~~~~~~--l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~  175 (416)
T PRK09440        100 IAL--TNGSQSAFFYLFNL--FAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH  175 (416)
T ss_pred             EEE--ccChHHHHHHHHHH--HhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc
Confidence            988  99999999988543  34     26899999 79999999886653332    22222332111 3689999987


Q ss_pred             HHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEE
Q 017967          221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (363)
Q Consensus       221 ~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  300 (363)
                        +.   .+++++++||||||||.+++.+++++|+++|+++|++||+||+|.++....   ......  ....+++|+++
T Consensus       176 --~~---~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~---~~~~~~--~~~~~~vI~~~  245 (416)
T PRK09440        176 --ID---EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI---IFSEAT--PLWNPNIILCM  245 (416)
T ss_pred             --cC---CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc---chhhcC--ccccCCeEEEe
Confidence              22   356788899999999999999999999999999999999999998653210   000100  01247899999


Q ss_pred             cCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       301 S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      ||||. ++||+|+||+  +++ ++    +++.+.........++|.++|.+++.+|++.+
T Consensus       246 SfSK~-~~pGlRiG~~--i~~-~~----l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~  297 (416)
T PRK09440        246 SLSKL-GLPGVRCGIV--IAD-EE----IIEALSNMNGIISLAPGRLGPAIAAEMIESGD  297 (416)
T ss_pred             ccccc-CCCcceEEEE--eCC-HH----HHHHHHHHHHHhccCCCcHHHHHHHHHhccch
Confidence            99996 8999999999  765 66    56666666555566899999999999987653

>PRK06836 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6.2e-34  Score=275.99  Aligned_cols=255  Identities=18%  Similarity=0.249  Sum_probs=202.6

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      +++++|+.|.|.     ..+++.+.+++.......  ...+|.+..|.+++|+++++++...++..+++++|++  |.|+
T Consensus        33 ~~~~~l~~g~p~-----~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~--t~G~  105 (394)
T PRK06836         33 DNVFDFSLGNPS-----VPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVM--TCGA  105 (394)
T ss_pred             CCeEEecCcCCC-----CCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEE--eCCh
Confidence            468999998752     224677777776665321  2377989999999999999999887788888999988  9999


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       161 t~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      ++++.++  +..++.+||.|++++|+|..+...++..|++++.+++++ +++++|++.+++.+++   +++++++++|||
T Consensus       106 ~~al~~~--~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~-~~~~~d~~~l~~~~~~---~~~~v~~~~p~N  179 (394)
T PRK06836        106 AGALNVA--LKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDT-DTFQPDLDALEAAITP---KTKAVIINSPNN  179 (394)
T ss_pred             HHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCC-ccCcCCHHHHHhhcCc---CceEEEEeCCCC
Confidence            9999888  344568999999999999999999999999999999853 3578999999998863   466778899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHh------cCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccce
Q 017967          241 PTGIDPTPEQWEKIADVIQE------KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~------~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG  314 (363)
                      |||.+++.+++++|+++|++      ||++||+||+|.++.+++.  ....+   ....+++++++||||.||+||+|+|
T Consensus       180 PtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~---~~~~~~~i~~~S~SK~~~~pGlRiG  254 (394)
T PRK06836        180 PTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGA--EVPYI---FKYYDNSIVVYSFSKSLSLPGERIG  254 (394)
T ss_pred             CCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCC--CCCCh---HHccCcEEEEecchhhccCcceeeE
Confidence            99999999999999999999      8999999999999987532  11222   2345689999999999999999999


Q ss_pred             EEEEeeCChhHH--HHHHHHHHhhhcc-ccCCCchHHHHHHhccccc
Q 017967          315 AMNVVCSSSDLA--ARVKSQLKRLARP-MYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       315 ~i~~v~~~~~~~--~~~~~~l~~~~~~-~~~~~s~~~q~~~~~~l~~  358 (363)
                      |+  +++ ++..  .+++..+....+. .+.+++.+.|.++..++++
T Consensus       255 ~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  298 (394)
T PRK06836        255 YI--AVN-PEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDA  298 (394)
T ss_pred             EE--ecC-HHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCC
Confidence            99  665 4321  1233333333332 2347889999999888765

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=100.00  E-value=1.9e-34  Score=276.09  Aligned_cols=239  Identities=15%  Similarity=0.095  Sum_probs=186.3

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCc-ccCCcEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV-LKEQRVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~-~~~~~i~~~~t~ggt  161 (363)
                      +++++|+.|.|.     ..+++.+.+++.+...   ...|.+..|.++||+++++++...++.. +++++|++  |.|++
T Consensus        21 ~~~i~l~~~~p~-----~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~i--t~G~~   90 (357)
T TIGR03539        21 DGIVDLSVGTPV-----DPVPPLIRAALAAAAD---APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLP--VIGTK   90 (357)
T ss_pred             CCeEEccCCCCC-----CCCCHHHHHHHHHHHh---hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEE--ccChH
Confidence            378999999863     1235666777665442   2679999999999999999998877876 89999988  99999


Q ss_pred             HHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          162 GSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       162 ~al~l~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      +++.++..  .+ +.+||.|++++|+|+.+...++..|++++.++         +++.++.      .+++++++++|||
T Consensus        91 ~~i~~~~~--~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l~~------~~~~~v~~~~p~N  153 (357)
T TIGR03539        91 ELVAWLPT--LLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD---------DPTELDP------VGPDLIWLNSPGN  153 (357)
T ss_pred             HHHHHHHH--HHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC---------ChhhcCc------cCccEEEEeCCCC
Confidence            99888733  23 47999999999999999999999999888774         1222221      2456777899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH---HHhcCCeEEEEEcCccccccccccceEEE
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL---FATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                      |||.+++.+++++|+++|+++|++||+||+|.++.+++.   ..+...   .....+++++++||||.|+++|+|+||+ 
T Consensus       154 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~-  229 (357)
T TIGR03539       154 PTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGR---PVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFV-  229 (357)
T ss_pred             CcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCC---CccceecccCCCccccEEEEeccccccCCCceeEEEE-
Confidence            999999999999999999999999999999999887531   111100   0012358999999999999999999999 


Q ss_pred             EeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          318 VVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       318 ~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                       +++ ++    +++.+.+.......+++.+.|.++..+|++
T Consensus       230 -i~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  264 (357)
T TIGR03539       230 -AGD-PA----LVAELLTVRKHAGLMVPAPVQAAMVAALGD  264 (357)
T ss_pred             -ecC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHcCC
Confidence             665 66    555555555555568899999999888865

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.9e-34  Score=274.92  Aligned_cols=238  Identities=18%  Similarity=0.183  Sum_probs=190.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      +.++|+.|++.  .+   +++.+.+++.+....   ..|.|..|.+++|+++|+++.      +++++|++  |+|++++
T Consensus        30 ~~i~l~~n~~~--~~---~~~~v~~a~~~~~~~---~~~~p~~g~~~lr~~ia~~~~------~~~~~i~~--t~G~~~~   93 (359)
T PRK03158         30 KIVKLASNENP--YG---PSPKVKEAIAAHLDE---LALYPDGYAPELRTKVAKHLG------VDEEQLLF--GAGLDEV   93 (359)
T ss_pred             ceEEecCCCCC--CC---CCHHHHHHHHHHHHH---hhcCCCCcHHHHHHHHHHHhC------CCHHHEEE--CCCHHHH
Confidence            78999999863  11   355677777665532   456688899999999999973      34789988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                      +.++.  ..++.+||.|++++|+|+.+...+...|++++.+|++   ++++|++.+++.+.+   ++++++++|||||||
T Consensus        94 l~~~~--~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~~---~~~~v~i~~p~NPtG  165 (359)
T PRK03158         94 IQMIS--RALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDE---QTKIVWICNPNNPTG  165 (359)
T ss_pred             HHHHH--HHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcCC---CCCEEEEeCCCCCCC
Confidence            98873  3446799999999999999999999999999999984   468999999988753   456777899999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      .+++.+++.++++.|+ +|++||+||+|.+|.+++.   ..+.....+..+++++++||||.||++|+|+||+  +++ +
T Consensus       166 ~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~--v~~-~  238 (359)
T PRK03158        166 TYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAED---YPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYG--IAS-E  238 (359)
T ss_pred             CCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcc---cccHHHHHHhcCCEEEEEechHhhcCcchhhehh--cCC-H
Confidence            9999999999988875 6999999999999987532   1122223355679999999999999999999999  765 6


Q ss_pred             hHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          324 DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       324 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +    +++++.....  ..+++.++|.++..+|++
T Consensus       239 ~----~~~~~~~~~~--~~~~~~~~q~~~~~~l~~  267 (359)
T PRK03158        239 E----LIEKLNIARP--PFNTTRIAQYAAIAALED  267 (359)
T ss_pred             H----HHHHHHHhcC--CCCCCHHHHHHHHHHhcC
Confidence            6    5566655543  247899999999998864

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=7.4e-34  Score=273.34  Aligned_cols=241  Identities=20%  Similarity=0.253  Sum_probs=189.7

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      +++|+|+.|++.  .   .+++.+.+++.+....  ..+|++..|. +||+++|+++.      +++++|++  |+|+++
T Consensus        36 ~~~i~l~~~~~~--~---~~~~~~~~al~~~~~~--~~~Y~~~~g~-~lr~~ia~~~~------~~~~~i~~--t~G~~~   99 (371)
T PRK05166         36 PRIAKLGSNENP--L---GPSPAVRRAFADIAEL--LRLYPDPQGR-ALREAIAARTG------VPADRIIL--GNGSED   99 (371)
T ss_pred             cceEEcCCCCCC--C---CCCHHHHHHHHHHHHH--hhcCCCCcHH-HHHHHHHHHhC------cCHHHEEE--cCCHHH
Confidence            478999999863  1   2356677776654322  3679888885 99999999962      24789988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++.  ..++.+||.|+++.|+|+.+...++..|++++.++++  .++++|++++++.+++   ++++++++||||||
T Consensus       100 ~l~~~~--~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~~~~---~~~~v~l~~p~NPt  172 (371)
T PRK05166        100 LIAVIC--RAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT--PDLGFDLDALCAAVAR---APRMLMFSNPSNPV  172 (371)
T ss_pred             HHHHHH--HHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHhhhc---CCCEEEEeCCCCCC
Confidence            998884  3446899999999999999999999999999999984  3578999999998874   34567789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH-hcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      |.+++.+++++|+++|++ +++||+||+|.+|.+++   +..+..... +..+++|+++||||.||++|+|+||+  +++
T Consensus       173 G~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~---~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~--i~~  246 (371)
T PRK05166        173 GSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGD---DYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYG--LVS  246 (371)
T ss_pred             CCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCc---CcccHHHHHhhcCCCEEEEeechHhhhcchhheeee--ecC
Confidence            999999999999999874 88999999999999643   122222222 34568999999999999999999998  676


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +++    +++.+.+..  ...+++.++|.++...|..
T Consensus       247 ~~~----l~~~~~~~~--~~~~~~~~~q~~~~~~l~~  277 (371)
T PRK05166        247 DPE----LVGLLDRVR--TPFNVNGAAQAAALAALDD  277 (371)
T ss_pred             CHH----HHHHHHHhc--cCCCCCHHHHHHHHHHhcC
Confidence            677    555555443  2457899999888777654

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=2.1e-33  Score=268.68  Aligned_cols=255  Identities=15%  Similarity=0.140  Sum_probs=190.4

Q ss_pred             CCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCC
Q 017967           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (363)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (363)
                      ++.++......++... .+.++|+.|++.     ..+++.+.+++.+.... . ..|+ ..+..+||+++|+++.     
T Consensus         4 ~~~~~~~~~~~~~~~~-~~~i~l~~~~~~-----~~~p~~~~~a~~~~~~~-~-~~y~-~~~~~~lr~~ia~~~~-----   69 (356)
T PRK08056          4 HGGNIREAATVLGISP-DQLLDFSANINP-----LGMPVSLKRAIIDNLDC-A-ERYP-DVEYRHLHQALARHHQ-----   69 (356)
T ss_pred             CCccHHHHHHHhCCCh-hhEEEeccccCC-----CCCCHHHHHHHHHHHHh-c-ccCc-CccHHHHHHHHHHHhC-----
Confidence            3445555555554433 268999998862     22456667776654432 2 4575 4578999999999962     


Q ss_pred             cccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc
Q 017967          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (363)
Q Consensus       146 ~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (363)
                       +++++|++  |.|+++++.++..   .+.+|+ +++++|+|..|...++..|++++.+|+++++++.+| +.+++.+. 
T Consensus        70 -~~~~~i~i--t~Ga~~~l~~~~~---~l~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~-  140 (356)
T PRK08056         70 -VPASWILA--GNGETESIFAVVS---GLKPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALT-  140 (356)
T ss_pred             -cChhhEEE--CCCHHHHHHHHHH---HhCCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc-
Confidence             35789988  9999999988843   246776 777899999999999999999999998654456666 34555554 


Q ss_pred             CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccc
Q 017967          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (363)
Q Consensus       226 ~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  305 (363)
                        +++++++++|||||||.+++.+++++|+++|++++++||+||+|.+|.+++.  ...+   .....+++++++||||.
T Consensus       141 --~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~---~~~~~~~~i~~~S~SK~  213 (356)
T PRK08056        141 --PDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDET--GFIP---QLADNPHLWVLRSLTKF  213 (356)
T ss_pred             --CCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcch--HHHH---HhccCCCEEEEEechhh
Confidence              3456777899999999999999999999999999999999999999986431  1111   22345789999999999


Q ss_pred             cccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       306 ~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ||++|+|+||+  ++++++    +++.+++..  ...+++.++|.++..+|+.
T Consensus       214 ~~~~G~RiG~~--v~~~~~----~~~~l~~~~--~~~~~~~~~~~~a~~~l~~  258 (356)
T PRK08056        214 YAIPGLRLGYL--VNSDDA----AVARMRRQQ--MPWSINAFAALAGEVILQD  258 (356)
T ss_pred             ccCcchhheee--ecCCHH----HHHHHHHhC--CCCchhHHHHHHHHHHhCC
Confidence            99999999999  776666    445555432  3457788999988887753

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=100.00  E-value=2.2e-33  Score=268.93  Aligned_cols=236  Identities=14%  Similarity=0.101  Sum_probs=177.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      +.|+|+.|++.     ..+++.+.+++.+....  ..+|++. +..+||+++|+++      .+++++|++  |+|++++
T Consensus        23 ~~i~l~~~~n~-----~~~~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~aia~~~------~v~~~~I~i--t~G~~~~   86 (360)
T PRK07392         23 AILDFSASINP-----LGPPESVIAAIQSALSA--LRHYPDP-DYRELRLALAQHH------QLPPEWILP--GNGAAEL   86 (360)
T ss_pred             cEEEeCCcCCC-----CCCCHHHHHHHHHHHHH--hhcCCCc-CHHHHHHHHHHHh------CcChhhEEE--CCCHHHH
Confidence            68999988752     22456666666554432  3678654 5689999999997      246899988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCC---CCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTV---GLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~---~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      +.++..   .+.+||.|++++|+|..|...++..|++++.++++++..+   ..+++.+++..    ++++++++|||||
T Consensus        87 i~~~~~---~l~~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~nP~N  159 (360)
T PRK07392         87 LTWAGR---ELAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL----TPNDGLLLNNPHN  159 (360)
T ss_pred             HHHHHH---HhCCCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc----cCCCEEEEeCCCC
Confidence            988833   3457899999999999999999999999999998543322   23555554432    2467888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      |||.+++.+++.++   ++++++ +|+||+|.+|.+++.   ..+.....+..+++++++||||.||++|+|+||+  ++
T Consensus       160 PTG~~~~~~~l~~l---~~~~~~-~IiDE~y~~~~~~~~---~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~--v~  230 (360)
T PRK07392        160 PTGKLWSREAILPL---LEQFAL-VVVDEAFMDFLPPDA---EQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYA--IA  230 (360)
T ss_pred             CCCCCcCHHHHHHH---HHHCCE-EEEECchhhhccCcc---ccchHHHhhcCCCEEEEEechhhhcCCchheeee--eC
Confidence            99999998776655   667775 666999999987531   2233333455679999999999999999999999  77


Q ss_pred             CChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          321 SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      + ++    +++.+.+..  ...+++.++|.++..+|++
T Consensus       231 ~-~~----~~~~~~~~~--~~~~~s~~~q~~~~~~l~~  261 (360)
T PRK07392        231 H-PD----RLQRWQQWR--DPWPVNGLAAAAAIAALAD  261 (360)
T ss_pred             C-HH----HHHHHHhhC--CCCCCCHHHHHHHHHHhcc
Confidence            6 55    445555443  2357999999999998875

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3e-33  Score=269.80  Aligned_cols=234  Identities=18%  Similarity=0.129  Sum_probs=184.1

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+|+.|++.     ..+++.+.+++....   ....| |..+..+||+++++++.      +++++|++  |.|+++
T Consensus        52 ~~~i~l~~n~~p-----~~~~~~v~~a~~~~~---~~~~Y-p~~~~~~lr~~ia~~~~------~~~~~I~~--t~Ga~~  114 (380)
T PLN03026         52 EDIVKLDANENP-----YGPPPEVLEALGNMK---FPYVY-PDPESRRLRAALAEDSG------LESENILV--GCGADE  114 (380)
T ss_pred             cceEEccCCCCC-----CCCCHHHHHHHHhhH---hhccC-CCCCHHHHHHHHHHHhC------cChhhEEE--cCCHHH
Confidence            479999999852     123455666664421   11346 45678999999999973      35789988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++.  ...+.+||+|++++|+|+.|...++..|++++.++.+  +++++|++.+++.+..  +++++++++||||||
T Consensus       115 ~i~~~~--~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~--~~~~~v~l~~P~NPT  188 (380)
T PLN03026        115 LIDLLM--RCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT--PDFSLDVPRIVEAVET--HKPKLLFLTSPNNPD  188 (380)
T ss_pred             HHHHHH--HHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHHhc--cCCcEEEEeCCCCCC
Confidence            998883  3446799999999999999999999999999999983  4578999999998842  346688889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|++.+    +++|+||+|.+|.+..   ..   ....+..+++++++||||.||++|+|+||+  +++ 
T Consensus       189 G~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~---~~---~~~~~~~~~viv~~SfSK~~glaGlRiGy~--~~~-  255 (380)
T PLN03026        189 GSIISDDDLLKILELP----ILVVLDEAYIEFSTQE---SR---MKWVKKYDNLIVLRTFSKRAGLAGLRVGYG--AFP-  255 (380)
T ss_pred             CCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc---ch---HHHHHhCCCEEEEecchHhhcCccccceee--ecC-
Confidence            9999999999998653    8999999999997642   11   122345689999999999999999999999  665 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++    +++.+.+...  ..+++.++|.++..+|++
T Consensus       256 ~~----~i~~l~~~~~--~~~~~~~~q~aa~~aL~~  285 (380)
T PLN03026        256 LS----IIEYLWRAKQ--PYNVSVAAEVAACAALSN  285 (380)
T ss_pred             HH----HHHHHHHhcC--CCCCCHHHHHHHHHHhhC
Confidence            66    5666665543  347889999999888865

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-33  Score=269.32  Aligned_cols=234  Identities=18%  Similarity=0.167  Sum_probs=182.8

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+|+.|++.     ..+++.+.+++.+...... ..|+ ..|.++||+++|+++.      +++++|++  |.|+++
T Consensus        24 ~~~i~l~~~~~~-----~~~~~~~~~a~~~~~~~~~-~~y~-~~~~~~lr~aia~~~~------~~~~~I~i--t~G~~~   88 (353)
T PRK05387         24 AKLIKLNTNENP-----YPPSPKVLEAIRAALGDDL-RLYP-DPNADALRQAIAAYYG------LDPEQVFV--GNGSDE   88 (353)
T ss_pred             cceeeccCCCCC-----CCCCHHHHHHHHHHhhhhh-hcCC-CCcHHHHHHHHHHHhC------CCHHHEEE--cCCHHH
Confidence            368999999862     1235677777766553322 5685 4467999999999973      45889988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++.  ..++.+||.|++++|+|+.|...++..|++++.++++  +++++|++.+++       ...+++++||||||
T Consensus        89 al~~~~--~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~-------~~~~v~~~~P~NPt  157 (353)
T PRK05387         89 VLAHAF--LAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD--DDFSIDVEDYLR-------PNGGIIFPNPNAPT  157 (353)
T ss_pred             HHHHHH--HHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHh-------cCCEEEEeCCCCCC
Confidence            999984  4457899999999999999999999999999999984  357899998863       13467789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|++.++  ++++|+||+|.+|...    .   ...+.+..+++++++||||.||++|+|+||+  +++ 
T Consensus       158 G~~~~~~~~~~l~~~~~--~~~livDe~y~~~~~~----~---~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~--~~~-  225 (353)
T PRK05387        158 GIALPLAEIERILAANP--DSVVVIDEAYVDFGGE----S---AIPLIDRYPNLLVVQTFSKSRSLAGLRVGFA--IGH-  225 (353)
T ss_pred             CCCCCHHHHHHHHHhCC--CcEEEEeCcccccCCc----c---hHHHHhhCCCEEEEEehhHhhcchhhhceee--ecC-
Confidence            99999999999988643  8999999999887422    1   1122345578999999999999999999999  665 


Q ss_pred             hhHHHHHHHHHHhhhccc-cCCCchHHHHHHhccccc
Q 017967          323 SDLAARVKSQLKRLARPM-YSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~-~~~~s~~~q~~~~~~l~~  358 (363)
                      ++    ++++++...... ..+++.++|.++..+|.+
T Consensus       226 ~~----~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~  258 (353)
T PRK05387        226 PE----LIEALNRVKNSFNSYPLDRLAQAGAIAAIED  258 (353)
T ss_pred             HH----HHHHHHHhhccCCCCCcCHHHHHHHHHHhcC
Confidence            66    556665554332 346889999999888764

>PRK09105 putative aminotransferase; Provisional

Probab=100.00  E-value=2.3e-33  Score=269.62  Aligned_cols=235  Identities=17%  Similarity=0.159  Sum_probs=184.3

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      ++.++|+.|++.     ..+++.+.+++.+.... . ..|++. +.++||+++++++.      +++++|++  |.|+++
T Consensus        43 ~~~i~l~~~~~~-----~~~~~~~~~a~~~~~~~-~-~~Y~~~-~~~~Lr~aia~~~~------v~~e~I~i--t~Gs~~  106 (370)
T PRK09105         43 EGAVFLNANECP-----LGPSPAARDAAARSAAL-S-GRYDLE-LEDDLRTLFAAQEG------LPADHVMA--YAGSSE  106 (370)
T ss_pred             CCcEEecCCCCC-----CCCCHHHHHHHHHHHHH-h-cCCCCc-hHHHHHHHHHHHhC------cChhhEEE--cCChHH
Confidence            578999998852     22456666666554432 1 357544 48999999999852      35899988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++  +..++.+||+|++++|+|+.|...++..|++++.++++  .++.+|++.+++. .   ++++++++|||||||
T Consensus       107 ai~~~--~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~-~---~~~~~v~l~nP~NPT  178 (370)
T PRK09105        107 PLNYA--VLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLR--ADGAHDVKAMLAA-D---PNAGLIYICNPNNPT  178 (370)
T ss_pred             HHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCC--CCCCCCHHHHHhc-C---CCCCEEEEeCCCCCC
Confidence            99988  44456799999999999999999999999999999984  3578899999875 2   246678889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|++.++ +++++|+||+|.+|...      .+...+.+..+++++++||||.||++|+|+||+  +++ 
T Consensus       179 G~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~------~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~--v~~-  248 (370)
T PRK09105        179 GTVTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA------PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLA--AAR-  248 (370)
T ss_pred             CcCcCHHHHHHHHHhCC-CCcEEEEECchHHhccC------cchHHHHhhCCCEEEEecccHhhcCCccceeee--ecC-
Confidence            99999999999998754 59999999999887532      133344455689999999999999999999999  765 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++    +++.+...   ....++.+.|.++...|.+
T Consensus       249 ~~----~i~~l~~~---~~~~~~~~~~~aa~~~L~~  277 (370)
T PRK09105        249 PD----LLAKLARF---GHNPLPVPAAAAGLASLRD  277 (370)
T ss_pred             HH----HHHHHHhc---CCCCcCHHHHHHHHHHHhC
Confidence            66    45555544   2346888899988887765

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.8e-33  Score=264.95  Aligned_cols=232  Identities=18%  Similarity=0.207  Sum_probs=180.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      +.|+|+.|++.     ..+++.+.+++.+.+.......| +..|.++||+++++++.      +++++|++  |+|++++
T Consensus        19 ~~i~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Y-~~~g~~~lr~~ia~~~~------~~~~~I~~--t~G~~~~   84 (337)
T PRK03967         19 YRIWLDKNENP-----FDLPEELKEEIFEELKRVPFNRY-PHITSDPLREAIAEFYG------LDAENIAV--GNGSDEL   84 (337)
T ss_pred             ceEEecCCCCC-----CCCCHHHHHHHHHHhhcCccccC-CCCCHHHHHHHHHHHhC------cCcceEEE--cCCHHHH
Confidence            67999988852     12345666666555432223567 45799999999999974      45799988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                      +.++.   ..+ +||+|+++.|+|+.|...++..|++++.++++  +++++|++.+++.+.    ++++++++|||||||
T Consensus        85 l~~~~---~~~-~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~----~~~~v~~~~P~NPtG  154 (337)
T PRK03967         85 ISYLV---KLF-EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLK--EDFTIDGERIAEKAK----NASAVFICSPNNPTG  154 (337)
T ss_pred             HHHHH---HHh-CCCeEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCcCHHHHHHhcc----CCCEEEEeCCCCCCC
Confidence            87763   223 79999999999999999899999999999984  357899999987643    344666799999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      .+++.+++.+++    ++++++|+||+|.+|...       +...+.+..+++|+++||||.||++|+|+||+  +++ +
T Consensus       155 ~~~~~~~l~~i~----~~~~~ii~De~y~~~~~~-------~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~i--v~~-~  220 (337)
T PRK03967        155 NLQPEEEILKVL----ETGKPVVLDEAYAEFSGK-------SLIGLIDEYPNLILLRTFSKAFGLAGIRAGYA--IAN-E  220 (337)
T ss_pred             CCCCHHHHHHHH----hcCCEEEEECchhhhccc-------chHHHHhhCCCEEEEecchHhhcchhhhheee--ecC-H
Confidence            999998887764    479999999999998632       11223345578999999999999999999999  665 6


Q ss_pred             hHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          324 DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       324 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      +    +++.+.+...  ..+++.++|.++..+|+..
T Consensus       221 ~----~i~~~~~~~~--~~~~~~~~q~~~~~~l~~~  250 (337)
T PRK03967        221 E----IIDALYRIKP--PFSLNILTMKIVRLALDHY  250 (337)
T ss_pred             H----HHHHHHhhcC--CCCCCHHHHHHHHHHHhCH
Confidence            6    5666666543  2478899999999888753

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.9e-33  Score=268.90  Aligned_cols=240  Identities=13%  Similarity=0.106  Sum_probs=186.2

Q ss_pred             CCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccc
Q 017967           80 DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (363)
Q Consensus        80 ~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (363)
                      .+....++|+.|++.     ..+++.+.+++.+....  ...|++. +..+||+++|+++.      +++++|++  |+|
T Consensus        29 ~g~~~~~~l~~~~~~-----~~~~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~~ia~~~~------~~~~~I~i--t~G   92 (369)
T PRK08153         29 RGRPFRARIGANESG-----FGPSPSVIAAMREAAAE--IWKYGDP-ENHDLRHALAAHHG------VAPENIMV--GEG   92 (369)
T ss_pred             cCCcceeEecCCCCC-----CCCCHHHHHHHHHHHHH--hhcCCCC-ccHHHHHHHHHHhC------CCHHHEEE--cCC
Confidence            344456899999862     12345566665544322  2568655 57899999999962      45789988  999


Q ss_pred             hhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCC
Q 017967          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (363)
Q Consensus       160 gt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~  239 (363)
                      +++++.++.  ...+.|||.|++++|+|+.+...++..|.+++.+|+++   .++|++.+++.+..  .+++++++||||
T Consensus        93 ~~~~l~~~~--~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~---~~~~~~~l~~~~~~--~~~~~i~l~~P~  165 (369)
T PRK08153         93 IDGLLGLIV--RLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRD---DREDLDALLDAARR--ENAPLVYLANPD  165 (369)
T ss_pred             HHHHHHHHH--HHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCC---CCCCHHHHHHHhcc--cCCcEEEEeCCC
Confidence            999998883  33467999999999999999999999999999999842   36889988877653  345677779999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEe
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      ||||.+++.+++.+|+++|+ ++++||+||+|.++.+++.   ..+   +....+++++++||||.||++|+|+||+  +
T Consensus       166 NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~---~~~---~~~~~~~~i~~~SfSK~~g~~GlRiG~~--v  236 (369)
T PRK08153        166 NPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA---APP---IDTDDPNVIRMRTFSKAYGLAGARVGYA--I  236 (369)
T ss_pred             CCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc---chh---hhhcCCCEEEEecchHhccCcchheeee--e
Confidence            99999999999999999887 4999999999999986531   222   2233578999999999999999999999  7


Q ss_pred             eCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          320 CSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++ ++    +++.+.+...  ..+++.++|.++..+|++
T Consensus       237 ~~-~~----~~~~l~~~~~--~~~~s~~~q~~~~~~l~~  268 (369)
T PRK08153        237 GA-PG----TIKAFDKVRN--HFGMNRIAQAAALAALKD  268 (369)
T ss_pred             cC-HH----HHHHHHHhhc--CCCCCHHHHHHHHHHhcC
Confidence            75 66    5555655543  247899999999998864

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=5.8e-33  Score=265.69  Aligned_cols=237  Identities=20%  Similarity=0.164  Sum_probs=186.0

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      +++|+|+.|++.     ..+++.+.+++...+.......|++ .|.++||+++|+++...     ..++|++  |.|+++
T Consensus        26 ~~~i~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~~~-----~~~~I~~--t~G~~~   92 (356)
T PRK04870         26 TGMVKLDAMENP-----YRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMGVP-----AGADVLL--GNGSDE   92 (356)
T ss_pred             CCceeCcCCCCC-----CCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhCcC-----CCCcEEE--cCCHHH
Confidence            479999998861     2346777777776554333367865 68899999999997422     1258877  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++.  ..++.+||+|++++|+|..|...++..|++++.++++  +++++|++.+++.+..  .++++++++||||||
T Consensus        93 ~i~~~~--~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~~~~--~~~~~v~l~~p~NPt  166 (356)
T PRK04870         93 LIQLLA--LACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAE--HRPALVFLAYPNNPT  166 (356)
T ss_pred             HHHHHH--HHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhhc--CCCCEEEEcCCCCCC
Confidence            988884  3346799999999999999999999999999999984  3588999999999864  245677779999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|+++|   ++++|+||+|.+|.+.+    ..+   .....+++++++|||| ++++|+|+||+  +++ 
T Consensus       167 G~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~----~~~---~~~~~~~vi~~~S~SK-~~~~GlRiG~~--i~~-  232 (356)
T PRK04870        167 GNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS----WLP---RLARFPNLLVMRTVSK-LGLAGLRLGYL--AGH-  232 (356)
T ss_pred             CCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc----hHH---HHhhCCCEEEEecchh-hhhHHHhhhhh--hCC-
Confidence            9999999999999988   77899999999987532    111   1245578999999999 89999999999  665 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++    +++.+.....  ..+++.++|.++..+++.
T Consensus       233 ~~----~i~~~~~~~~--~~~~~~~~q~~a~~~l~~  262 (356)
T PRK04870        233 PA----WIAELDKVRP--PYNVNVLTQATALFALEH  262 (356)
T ss_pred             HH----HHHHHHHccC--CCcCCHHHHHHHHHHHhC
Confidence            66    5566655432  346888999988777754

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=8.7e-33  Score=261.91  Aligned_cols=236  Identities=19%  Similarity=0.225  Sum_probs=191.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ++++|+.+++.     ..+++.+.++.....+  ..+.| |.....++++++++++..     +++++|++  ++|+++.
T Consensus        23 ~~i~LssNenP-----~gp~~~~~~~~~~~~~--~~~rY-Pd~~~~~l~~a~a~~~~~-----~~~~~V~~--gnGsde~   87 (356)
T COG0079          23 GIIKLSSNENP-----YGPPPKVIEAIRAALD--KLNRY-PDPDYRELRAALAEYYGV-----VDPENVLV--GNGSDEL   87 (356)
T ss_pred             cceeecCCCCC-----CCCCHHHHHHHHHHHH--hhccC-CCCcHHHHHHHHHHHhCC-----CCcceEEE--cCChHHH
Confidence            68999987752     1123666666555443  22667 555889999999999753     34789988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                      ++++.  ...+.+||+|+++.|+|..|...++..|++++.++..  + +.+|++.+.+.+.+   ++.++++||||||||
T Consensus        88 i~~l~--~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~--~-~~~d~~~~~~~~~~---~~~lv~i~nPNNPTG  159 (356)
T COG0079          88 IELLV--RAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLK--E-FRLDLDAILAAIRD---KTKLVFLCNPNNPTG  159 (356)
T ss_pred             HHHHH--HHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEeccc--c-cccCHHHHHHhhhc---CCCEEEEeCCCCCCC
Confidence            99994  4446799999999999999999999999999999984  2 89999999998884   466888899999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      ..++.++++++++.+.+ +.++|+||+|.+|...       +...+....+++++++||||.||++|+|+||+  ++ ++
T Consensus       160 ~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~-------~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~--ia-~~  228 (356)
T COG0079         160 TLLPREELRALLEALPE-GGLVVIDEAYIEFSPE-------SSLELLKYPPNLIVLRTFSKAFGLAGLRVGYA--IA-NP  228 (356)
T ss_pred             CCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCCc-------hhhhhccCCCCEEEEEecHHhhhcchhceeec--cC-CH
Confidence            99999999999999988 9999999999999862       22223345678999999999999999999999  55 47


Q ss_pred             hHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          324 DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       324 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      +    +++.+++...  -++.+.++|.++..+|.+.
T Consensus       229 ~----~i~~l~~vr~--p~~v~~~a~~aa~aal~~~  258 (356)
T COG0079         229 E----LIAALNKVRP--PFNVSSPALAAAIAALRDA  258 (356)
T ss_pred             H----HHHHHHHhcC--CCCCCHHHHHHHHHHcccH
Confidence            7    7777777643  3488999999998877765

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.6e-32  Score=263.40  Aligned_cols=247  Identities=19%  Similarity=0.240  Sum_probs=195.8

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .+.|+|+.|.+.     ..+++.+.+++.+.........|.+..|.++||+++|+++.      +++++|++  |.|+++
T Consensus        28 ~~~i~l~~~~~~-----~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~------~~~~~v~~--~~g~t~   94 (380)
T PRK06225         28 KEMIWMGQNTNH-----LGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLG------LDDDEALI--TAGATE   94 (380)
T ss_pred             CCeEEccCCCCC-----CCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcC------CCCCcEEE--eCCHHH
Confidence            378999988752     33467788888777654434678888999999999999963      34678988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEeccc-CCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++.++.  ..++.+||+|++++|+|..+...++..|++++.++++. ++++++|++.+++.+.+   +++++++++||||
T Consensus        95 al~~~~--~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~~p~Np  169 (380)
T PRK06225         95 SLYLVM--RAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDE---NTRLIYLIDPLNP  169 (380)
T ss_pred             HHHHHH--HHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCC---CceEEEEeCCCCC
Confidence            999884  34467999999999999999999999999999999743 33578999999998863   4567777899999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++|+++|+||+|.+|..+.     .....+  ..++++++.||||.||++|+|+||+  +++
T Consensus       170 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-----~~~~~~--~~~~~i~~~s~SK~~g~~G~RiG~i--~~~  240 (380)
T PRK06225        170 LGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH-----TLAAEY--APEHTVTSYSFSKIFGMAGLRIGAV--VAT  240 (380)
T ss_pred             CCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC-----Cchhhc--CCCCEEEEeechhhcCCccceeEEE--ecC
Confidence            9999999999999999999999999999999886432     112212  2368999999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       ++    +++.+..... ...+++.++|.++...|...++|
T Consensus       241 -~~----l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~~~~~  275 (380)
T PRK06225        241 -PD----LIEVVKSIVI-NDLGTNVIAQEAAIAGLKVKDEW  275 (380)
T ss_pred             -HH----HHHHHHHHHh-cccCCCHHHHHHHHHHHhcchHH
Confidence             66    4555554432 34577889999988777655444

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=1.6e-32  Score=285.81  Aligned_cols=232  Identities=10%  Similarity=0.050  Sum_probs=180.9

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC-CcEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt  161 (363)
                      +++|+|++|++.     ..+++.+.+++.+.....   .|  ..|.+++|+++++++.+.+|...++ ++|++  ++|++
T Consensus       697 ~~vI~LsinE~d-----~ppPp~V~eAi~eal~~~---~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIv--t~Gs~  764 (1082)
T PLN02672        697 SSLIHMDVDESF-----LPVPSAVKASIFESFVRQ---NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVY--GDTSL  764 (1082)
T ss_pred             CCEEEEeCCCCC-----CCCCHHHHHHHHHHHhhc---CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEE--eCCHH
Confidence            489999999862     224667777776654321   22  3356788999999998888887764 58877  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCC-C
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH-N  240 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~-N  240 (363)
                      +++.++  +..++.|||.|+++.|+|+.|...++..|++++.+|+++++++.+|++.++++++..  +...++++||| |
T Consensus       765 elL~ll--l~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~--~~~~I~L~nPnhN  840 (1082)
T PLN02672        765 ALFNKL--VLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETV--KKPWVYISGPTIN  840 (1082)
T ss_pred             HHHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC--CCCEEEEECcCCC
Confidence            998777  455578999999999999999999999999999999965567899999999998631  23356678996 9


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH---hc---CCeEEEEEcCccccccccccce
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA---TR---GMELLVAQSYSKNLGLYAERIG  314 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~---~~---~~~vi~~~S~SK~~~l~G~RvG  314 (363)
                      |||.+++.+++++|+++|++||++||+||+|.++.|++......+.....   +.   ..+|++++||||.|+++|+|+|
T Consensus       841 PTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIG  920 (1082)
T PLN02672        841 PTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFG  920 (1082)
T ss_pred             CcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHhe
Confidence            99999999999999999999999999999999998864211111121111   11   2379999999999999999999


Q ss_pred             EEEEeeCChhHHHHHHHHHHhh
Q 017967          315 AMNVVCSSSDLAARVKSQLKRL  336 (363)
Q Consensus       315 ~i~~v~~~~~~~~~~~~~l~~~  336 (363)
                      |+  ++++++    +++.+...
T Consensus       921 yl--Iap~~e----Li~~l~~~  936 (1082)
T PLN02672        921 FL--ALNDSV----LIDAFHSA  936 (1082)
T ss_pred             eE--EeCCHH----HHHHHHHh
Confidence            99  887776    45555443

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=6.7e-32  Score=257.85  Aligned_cols=237  Identities=17%  Similarity=0.132  Sum_probs=183.7

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      +..++|+.|++.     ..+++.+.++..+.+......+|++ .+..+||+++|+++.      +++++|++  |.|+++
T Consensus        22 ~~~~~l~~~~~~-----~~~p~~~~~a~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~~------~~~~~i~i--t~G~~~   87 (351)
T PRK14807         22 PYKYKMDANETP-----FELPEEVIKNIQEIVKSSQVNIYPD-PTAEKLREELARYCS------VVPTNIFV--GNGSDE   87 (351)
T ss_pred             CceeEccCCCCC-----CCCCHHHHHHHHHHhhcCcccCCCC-ccHHHHHHHHHHHhC------CCcccEEE--ecCHHH
Confidence            356889988862     2245677777766554323356754 457899999999962      34789988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++..  .++.+||+|+++.|+|..+...++..|++++.++++  +++++|++.+++.++.  .++++++++||||||
T Consensus        88 ~l~~~~~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~--~~~k~v~l~~p~NPt  161 (351)
T PRK14807         88 IIHLIML--AFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK--EDYTYDVGSFIKVIEK--YQPKLVFLCNPNNPT  161 (351)
T ss_pred             HHHHHHH--HhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHhhc--cCCCEEEEeCCCCCC
Confidence            9988843  447899999999999999999999999999999984  3578999999998873  245677778999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++.++++   +++.++|+||+|.++. +.   ...+   +.+..+++++++||||.||++|+|+||+  +++ 
T Consensus       162 G~~~~~~~l~~l~~---~~~~~~ivDe~y~~~~-~~---~~~~---~~~~~~~vi~~~S~SK~~~~~GlRiG~~--v~~-  228 (351)
T PRK14807        162 GSVIEREDIIKIIE---KSRGIVVVDEAYFEFY-GN---TIVD---VINEFENLIVLRTLSKAFGLAGLRVGYA--VAN-  228 (351)
T ss_pred             CCCCCHHHHHHHHH---hCCCEEEEeCcchhhc-cc---chHH---HhhhCCCEEEEecchHhcccchhceeee--ecC-
Confidence            99999999888754   5567899999999874 21   1112   2345579999999999999999999999  665 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++    +++.++..+.  ..+++.++|.++..+|++
T Consensus       229 ~~----~~~~~~~~~~--~~~~~~~~q~~~~~~l~~  258 (351)
T PRK14807        229 EN----ILKYLNLVKS--PYNINSLSQVIALKVLRT  258 (351)
T ss_pred             HH----HHHHHHHccC--CCCcCHHHHHHHHHHHhH
Confidence            66    5666665543  356789999999888864

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.5e-32  Score=258.04  Aligned_cols=229  Identities=15%  Similarity=0.113  Sum_probs=173.4

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .+.|+|+.|++.     ..+++.+.+++.+.........|+ ..|.++||+++++++...+   +++++|++  |+|+++
T Consensus        19 ~~~i~l~~~~~~-----~~~p~~~~~~~~~~~~~~~~~~Y~-~~~~~~Lr~aia~~~~~~~---~~~~~i~i--t~Ga~~   87 (335)
T PRK14808         19 RDRTYLALNENP-----FPFPEDLVDEVFRRLNSDTLRIYY-DSPDEELIEKILSYLDTDF---LSKNNVSV--GNGADE   87 (335)
T ss_pred             CceeEecCCCCC-----CCCCHHHHHHHHHHhhhhhhhcCC-CCChHHHHHHHHHHhCCCC---CCcceEEE--cCCHHH
Confidence            378999999862     223456666665544332223364 4589999999999986542   67899988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++..   .+   |.|++++|+|+.|...++..|++++.+|+++  ++.++...    +.    .++++++|||||||
T Consensus        88 ~i~~~~~---~~---d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~----~~----~~~~i~i~nP~NPT  151 (335)
T PRK14808         88 IIYVMML---MF---DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK--DLRIPEVN----VG----EGDVVFIPNPNNPT  151 (335)
T ss_pred             HHHHHHH---Hh---CcEEECCCCHHHHHHHHHHcCCeEEEecCCC--cCCCChhH----cc----CCCEEEEeCCCCCC
Confidence            9988843   23   7899999999999999999999999999843  34444221    22    24678889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|+    +++++||+||+|.+|...    ...   .+....+++++++||||.||++|+|+||+  +++ 
T Consensus       152 G~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~~~----~~~---~~~~~~~~vi~~~S~SK~~~l~GlRvG~~--v~~-  217 (335)
T PRK14808        152 GHVFEREEIERIL----KTGAFVALDEAYYEFHGE----SYV---DLLKKYENLAVIRTFSKAFSLAAQRIGYV--VSS-  217 (335)
T ss_pred             CCCcCHHHHHHHH----hcCCEEEEECchhhhcCC----chH---HHHHhCCCEEEEEechhhccCcccceEEE--EeC-
Confidence            9999999999986    479999999999998521    111   22345579999999999999999999999  776 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++    +++.+.+...  ..+++.++|.++..+++.
T Consensus       218 ~~----~~~~l~~~~~--~~~~~~~~q~a~~~~l~~  247 (335)
T PRK14808        218 EK----FIDAYNRVRL--PFNVSYVSQMFAKVALDH  247 (335)
T ss_pred             HH----HHHHHHHhcC--CCCCCHHHHHHHHHHHhC
Confidence            56    5666665542  357889999998877764

>PRK03321 putative aminotransferase; Provisional

Probab=100.00  E-value=1.5e-32  Score=262.49  Aligned_cols=243  Identities=18%  Similarity=0.211  Sum_probs=189.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ++|+|+.|.+.     ..+++.+.+++.+.... . ..| +..|..++|+++|+++.      +++++|++  |.|++++
T Consensus        23 ~~i~l~~~~~~-----~~~~~~~~~a~~~~~~~-~-~~y-~~~g~~~lr~~ia~~~~------~~~~~I~~--~~G~~~~   86 (352)
T PRK03321         23 GAIKLSSNETP-----FGPLPSVRAAIARAAAG-V-NRY-PDMGAVELRAALAEHLG------VPPEHVAV--GCGSVAL   86 (352)
T ss_pred             cceeccCCCCC-----CCCCHHHHHHHHHHHHh-c-CcC-CCCcHHHHHHHHHHHhC------cCHHHEEE--CCCHHHH
Confidence            68999998862     11355777777665432 2 457 56799999999999974      34789988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                      +.++.  ...+.|||.|+++.|+|..|...++..|++++.++++  .++++|++.+++.++.   +++++++++||||||
T Consensus        87 l~~~~--~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~~~~---~~~~v~l~~p~NPtG  159 (352)
T PRK03321         87 CQQLV--QATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLT--PDHTHDLDAMAAAITD---RTRLIFVCNPNNPTG  159 (352)
T ss_pred             HHHHH--HHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCC--CCCCCCHHHHHHhhcc---CCCEEEEeCCCCCcC
Confidence            88773  3346799999999999999999999999999999984  2478999999998863   455677789999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      .+++.+++.++++.+ ++++++|+||+|.+|.+++..  ..++. ..+..+++++++||||.||++|+|+||+  +++ +
T Consensus       160 ~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~--~~~~~-~~~~~~~vi~~~S~SK~~g~~GlRiG~~--v~~-~  232 (352)
T PRK03321        160 TVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDV--PDGLE-LVRDHPNVVVLRTFSKAYGLAGLRVGYA--VGH-P  232 (352)
T ss_pred             CCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCC--CcHHH-HHhhCCCEEEEecchHHhhhHHHhhhhh--cCC-H
Confidence            999999999998865 479999999999999876421  12222 2345579999999999999999999999  765 6


Q ss_pred             hHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          324 DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       324 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      +    +++.+.+..  ...+++.++|.++...|...++|
T Consensus       233 ~----~~~~~~~~~--~~~~~s~~~q~~a~~~l~~~~~~  265 (352)
T PRK03321        233 E----VIAALRKVA--VPFSVNSLAQAAAIASLAAEDEL  265 (352)
T ss_pred             H----HHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHH
Confidence            6    555555442  34588999999887777655444

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-31  Score=248.08  Aligned_cols=225  Identities=17%  Similarity=0.152  Sum_probs=185.8

Q ss_pred             CCCCCCCcchHHHHHHHHHHHh-cCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC
Q 017967          119 NKEYLPIEGLAAFNKVTAELLF-GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA  197 (363)
Q Consensus       119 ~~~Y~~~~G~~~lr~aia~~l~-~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~  197 (363)
                      .++|++..|.++|+..+.++.. ..+.+.+.+++|++  |.|.|.+++.+.  ..++++||.|+|+.++|+......+..
T Consensus        93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiii--t~G~t~~l~~~l--~~~~N~gd~vlie~~ty~~AL~s~~a~  168 (472)
T KOG0634|consen   93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIII--TNGNTDGLFKVL--RTLINRGDHVLIEEYTYPSALQSMEAL  168 (472)
T ss_pred             hhccccccCcHHHHHHHHHhccccccCCCCCCceEEE--ecCCchHHHHHH--HHhhcCCCceEEecccchHHHHhcccc
Confidence            3899999999999999999754 45667778889988  999999999994  445789999999999999999999999


Q ss_pred             CCCeEEEecccCCCCCCCHHHHHHHHHc-------CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecC
Q 017967          198 RVPWSEYRYYDPKTVGLDFEGMIADIKA-------APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (363)
Q Consensus       198 G~~~~~v~~~~~~~~~~d~~~l~~~l~~-------~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~  270 (363)
                      |+++++|+++   ..|+++|.|++.+..       ++++.++|.|++.|||||.+++.+++++|+++||+|+++||+||.
T Consensus       169 gv~~ipv~md---~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdp  245 (472)
T KOG0634|consen  169 GVKIIPVKMD---QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDP  245 (472)
T ss_pred             CceEEecccc---CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCc
Confidence            9999999984   459999999998876       345789999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCC------CCchhHHHHHH----------hcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHH
Q 017967          271 YQGFASGSL------DNDASSVRLFA----------TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLK  334 (363)
Q Consensus       271 y~~~~~~~~------~~~~~~~~~~~----------~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~  334 (363)
                      |.-+.++..      +.+..+.+.|.          +...+||-..||||.++ ||+|+||+  .+ ++-    ++++..
T Consensus       246 Yy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~i--t~-~~~----~l~ril  317 (472)
T KOG0634|consen  246 YYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWI--TG-NSL----FLKRIL  317 (472)
T ss_pred             cceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEe--ec-CHH----HHHHHh
Confidence            987776521      11122222332          44579999999999997 99999999  44 455    445444


Q ss_pred             hhhccccCCCchHHHHHHhccccc
Q 017967          335 RLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       335 ~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ........++|.++|.++..+|+.
T Consensus       318 ~~ae~~t~~pSg~sq~iv~a~l~~  341 (472)
T KOG0634|consen  318 DLAEVATSGPSGFSQGIVYAMLKR  341 (472)
T ss_pred             hhcceeecCcccccHHHHHHHHHH
Confidence            555667778999999999877653

>PRK08354 putative aminotransferase; Provisional

Probab=100.00  E-value=1.5e-31  Score=251.28  Aligned_cols=215  Identities=14%  Similarity=0.146  Sum_probs=166.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ++|+|+.|++      +..++.+.+++.+..+.  ...|+.   ...+|+++++++.         ++|++  |+|++++
T Consensus         9 ~~i~l~~~~n------p~~p~~~~~a~~~~~~~--~~~yp~---~~~l~~~ia~~~~---------~~I~v--t~G~~~a   66 (311)
T PRK08354          9 GLIDFSASVN------PYPPEWLDEMFERAKEI--SGRYTY---YEWLEEEFSKLFG---------EPIVI--TAGITEA   66 (311)
T ss_pred             ceeEecCCCC------CCCCHHHHHHHHHHHHH--hhcCCC---hHHHHHHHHHHHC---------CCEEE--CCCHHHH
Confidence            7899998874      22345666666554432  245743   4679999999862         47877  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                      +.++.   ..+.+||+|++++|+|+.|...++..|++++.+        ++|++.+++.++    ++.+++++|||||||
T Consensus        67 l~~~~---~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~----~~~~vi~~~P~NPTG  131 (311)
T PRK08354         67 LYLIG---ILALRDRKVIIPRHTYGEYERVARFFAARIIKG--------PNDPEKLEELVE----RNSVVFFCNPNNPDG  131 (311)
T ss_pred             HHHHH---HhhCCCCeEEEeCCCcHHHHHHHHHcCCEEeec--------CCCHHHHHHhhc----CCCEEEEecCCCCCC
Confidence            88773   334589999999999999999999999999765        357888988775    234677799999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      .+++.+++++|+++|+++|+++|+||+|.+|.+++.     +     ...+++++++||||.||++|+|+||+  ++.  
T Consensus       132 ~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~-----~-----~~~~~vi~~~S~SK~~~l~GlRiG~~--v~~--  197 (311)
T PRK08354        132 KFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE-----S-----PEGENIIKLRTFTKSYGLPGIRVGYV--KGF--  197 (311)
T ss_pred             CccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc-----c-----cCCCcEEEEeccHhhcCCccceeeee--eeh--
Confidence            999999999999999999999999999999987631     1     12578999999999999999999999  551  


Q ss_pred             hHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          324 DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       324 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                            ++.+++...  ....+..+|.++..+++
T Consensus       198 ------~~~l~~~~~--~~~~~~~~~~~~~~~~~  223 (311)
T PRK08354        198 ------EEAFRSVRM--PWSIGSTGYAFLEFLIE  223 (311)
T ss_pred             ------HHHHHHcCC--CccCCHHHHHHHHHHHH
Confidence                  334444433  23555677777776655

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-31  Score=256.16  Aligned_cols=211  Identities=19%  Similarity=0.246  Sum_probs=169.7

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCC
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDAR  198 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~~G  198 (363)
                      .+|++. +..+||+++|+++.      +++++|++  |+|+++++.++.  ..++.+| |.|++++|+|..|...++..|
T Consensus        54 ~~Y~~~-~~~~lr~~ia~~~~------~~~~~I~~--t~G~~~~l~~~~--~~~~~~g~~~vlv~~p~y~~~~~~~~~~g  122 (364)
T PRK04781         54 RRYPDP-QPPGLRSALAALYG------CAPEQLLI--GRGSDEAIDLLV--RALCVPGRDAVLVTPPVFGMYAVCARLQN  122 (364)
T ss_pred             ccCCCC-CHHHHHHHHHHHhC------cChHHEEE--eCCHHHHHHHHH--HHhcCCCCCeEEEcCCChHHHHHHHHHcC
Confidence            567544 47999999999973      35789988  999999999884  3445688 799999999999999899999


Q ss_pred             CCeEEEeccc-CCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCC
Q 017967          199 VPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (363)
Q Consensus       199 ~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~  277 (363)
                      ++++.+|+++ ++++.+|++.+++.+..  +++++++++|||||||.+++.+++++|++.|+ ++++||+||+|.+|.+.
T Consensus       123 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~  199 (364)
T PRK04781        123 APLVEVPLVDGADGFHADVPAIVAAALA--SNAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDV  199 (364)
T ss_pred             CEEEEEecCCCccCCCcCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCC
Confidence            9999999843 23466789998766542  34667777999999999999999999999886 47899999999999853


Q ss_pred             CCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      .      +...+.+..+++++++||||.||++|+|+||+  +++ ++    +++.+.+...  ..+.+.++|.++..+|+
T Consensus       200 ~------~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~--v~~-~~----l~~~l~~~~~--~~~~~~~~~~~a~~~l~  264 (364)
T PRK04781        200 P------SAVGLLARYDNLAVLRTLSKAHALAAARIGSL--IAN-AE----LIAVLRRCQA--PYPVPTPCAALAEQALS  264 (364)
T ss_pred             c------chHHHHhhCCCEEEEecChhhcccccceeeee--eCC-HH----HHHHHHhccC--CCCCCHHHHHHHHHHHh
Confidence            1      22233456689999999999999999999999  765 66    6666666643  34788999999888887


Q ss_pred             cc
Q 017967          358 GK  359 (363)
Q Consensus       358 ~~  359 (363)
                      +.
T Consensus       265 ~~  266 (364)
T PRK04781        265 AP  266 (364)
T ss_pred             cc
Confidence            54

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.98  E-value=3.9e-31  Score=250.48  Aligned_cols=217  Identities=14%  Similarity=0.114  Sum_probs=164.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ++|+|+.+++..  ++  +++.+.+.   ..     ..|+.  +..+||+++++++.        +++|++  |+|++++
T Consensus        21 ~~i~l~~ne~p~--~~--~~~~~~~~---~~-----~~yp~--~~~~Lr~~ia~~~~--------~~~I~i--t~Gs~~a   76 (330)
T PRK05664         21 DWLDLSTGIAPW--PW--PVPAIPAD---AW-----ARLPE--TDDGLEAAARAYYG--------APQLLP--VAGSQAA   76 (330)
T ss_pred             HheeecCCcCCC--CC--CCcccCHH---HH-----HhCCC--ChHHHHHHHHHHhC--------CCCEEE--CcCHHHH
Confidence            679999987421  11  11122111   11     23643  33899999999962        368988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                      +.++.    .+.+||+|++++|+|+.|...++..|++++.+|++          .+++.+.    ++++++++|||||||
T Consensus        77 l~~~~----~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~----------~~~~~~~----~~~~v~l~nP~NPTG  138 (330)
T PRK05664         77 IQALP----RLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA----------EVEAALD----SLDVLVVVNPNNPTG  138 (330)
T ss_pred             HHHHH----HccCCCEEEEcCCChHHHHHHHHHcCCeEEEechh----------hHhhhhc----CCCEEEEeCCcCCCC
Confidence            88872    24699999999999999999999999999999862          3444443    244677799999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      .+++.+++++|+++|++++++||+||+|.++...      .+...+ ...+++++++||||.||+||+|+||+  +++ +
T Consensus       139 ~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~------~s~~~~-~~~~~vi~~~SfSK~~gl~GlRiG~~--v~~-~  208 (330)
T PRK05664        139 RRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQ------HSLAAC-AHRPGLIVLRSFGKFFGLAGARLGFV--LAE-P  208 (330)
T ss_pred             CccCHHHHHHHHHHHHhcCCEEEEECCcccCCCc------cccccc-ccCCCEEEEeeccccccCCCcceEEE--EeC-H
Confidence            9999999999999999999999999999887521      123333 34578999999999999999999999  776 6


Q ss_pred             hHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          324 DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       324 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +    +++.+.....  ..+.+.++|.++..+|++
T Consensus       209 ~----l~~~~~~~~~--~~~~~~~~~~~~~~~L~~  237 (330)
T PRK05664        209 A----LLRALAELLG--PWTVSGPTRWLAQAALAD  237 (330)
T ss_pred             H----HHHHHHHhcC--CCCCCHHHHHHHHHHHhC
Confidence            6    5666665543  236778899998888765

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.98  E-value=1.2e-31  Score=256.09  Aligned_cols=206  Identities=18%  Similarity=0.206  Sum_probs=166.9

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCC
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDAR  198 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~~G  198 (363)
                      ..| |.....++++++++++.      +++++|++  |+|+++++.++.  ...+.+| |.|+++.|+|..|...++..|
T Consensus        52 ~~Y-p~~~~~~l~~~~a~~~g------~~~~~I~~--~~Gs~e~i~~~~--~~~~~~g~~~vli~~P~y~~y~~~~~~~G  120 (351)
T PRK01688         52 NRY-PECQPKAVIENYAAYAG------VKPEQVLV--SRGADEGIELLI--RAFCEPGKDAILYCPPTYGMYSVSAETIG  120 (351)
T ss_pred             ccC-CCCChHHHHHHHHHHhC------CCHHHEEE--cCCHHHHHHHHH--HHhcCCCCCEEEEcCCCHHHHHHHHHHcC
Confidence            557 44445799999999852      35899988  999999999984  3446687 899999999999999999999


Q ss_pred             CCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCC
Q 017967          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (363)
Q Consensus       199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~  278 (363)
                      ++++.+|++  +++++|++.+++++.    +++++++||||||||.+++.+++++|++.|++ +.++|+||+|.+|....
T Consensus       121 ~~~~~v~~~--~~~~~d~~~l~~~~~----~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~  193 (351)
T PRK01688        121 VEIRTVPTL--DNWQLDLPAIADNLD----GVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQA  193 (351)
T ss_pred             CEEEEeecC--CCCCCCHHHHHHhcc----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCC
Confidence            999999984  358999999998763    45677889999999999999999999999986 68899999999997431


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                            +...+....+++++++||||.||++|+|+||+  +++ ++    +++.+++...  .++++.+.|.++..+|.+
T Consensus       194 ------s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~--i~~-~~----~i~~l~~~~~--~~~v~~~~~~~a~~~L~~  258 (351)
T PRK01688        194 ------SLAGWLAEYPHLVILRTLSKAFALAGLRCGFT--LAN-EE----VINLLLKVIA--PYPLSTPVADIAAQALSP  258 (351)
T ss_pred             ------ChHHHHhhCCCEEEEecchHhhcCHHHHHhHH--hCC-HH----HHHHHHhccC--CCCCCHHHHHHHHHHHhc
Confidence                  23334455689999999999999999999999  665 66    5566665533  346778888888777764

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.98  E-value=5e-31  Score=250.48  Aligned_cols=237  Identities=13%  Similarity=0.071  Sum_probs=172.5

Q ss_pred             CCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCC
Q 017967           65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (363)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (363)
                      .++..+..+...+.... .++++|+.+++.  .+++  ++.+..  .. .     ..|+.. . .+||+++|+++.-.  
T Consensus         7 ~hg~~~~~~~~~~~~~~-~~~i~ls~Nenp--~~~~--~~~~~~--~~-~-----~~Yp~~-~-~~L~~~ia~~~~~~--   69 (339)
T PRK06959          7 AHGGNLHEAARRYGIPY-DAWLDLSTGINP--HGYP--VPPVPA--DA-W-----RRLPED-D-DGLAACAARYYGAP--   69 (339)
T ss_pred             CCCchHHHHHHHcCCCh-hhhceeccCCCC--CCCC--CCCCCH--HH-H-----HhCCCc-h-HHHHHHHHHHhCCC--
Confidence            34445555554444322 268999988752  2222  111111  11 1     347543 3 89999999996332  


Q ss_pred             CcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHH
Q 017967          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (363)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (363)
                         ++++|++  |+|+++++.++   ...+.+|| |+++.|+|+.|...++..|++++.+++++        +.+.+   
T Consensus        70 ---~~~~I~i--~~Gs~e~i~~l---~~~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~--------~~~~~---  129 (339)
T PRK06959         70 ---DAAHVLP--VAGSQAAIRAL---PALLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA--------DTLPA---  129 (339)
T ss_pred             ---CcccEEE--CcCHHHHHHHH---HHhcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--------hhccc---
Confidence               3589988  99999998866   33456776 89999999999999999999999988632        22211   


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcc
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  304 (363)
                          ...++++||||||||.+++.+++++|++.|++++.++|+||+|.+|.+.      .+...+. ..+++++++||||
T Consensus       130 ----~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~------~s~~~~~-~~~~vi~l~SfSK  198 (339)
T PRK06959        130 ----ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA------ASLAAHT-DRPGLVVLRSVGK  198 (339)
T ss_pred             ----cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc------ccchhcc-CCCCEEEEecChh
Confidence                2346778999999999999999999999999999999999999998743      1232332 3478999999999


Q ss_pred             ccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          305 NLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       305 ~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      .||++|+|+||+  +++ ++    +++++.+...  ..+.+.++|.++..+|++
T Consensus       199 ~~gl~GlRiGy~--v~~-~~----li~~l~~~~~--~~~vs~~~q~a~~~~L~~  243 (339)
T PRK06959        199 FFGLAGVRAGFV--LAA-PA----LLAALRDALG--AWTVSGPARHAVRAAFAD  243 (339)
T ss_pred             hcCCcchheEEE--ecC-HH----HHHHHHHhcC--CCCCcHHHHHHHHHHhCc
Confidence            999999999999  776 66    6666666543  345788999999998875

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.97  E-value=1.2e-30  Score=250.53  Aligned_cols=239  Identities=17%  Similarity=0.186  Sum_probs=186.6

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++++|+.|++.  .+   +++.+.+++.+.... . ..|++.. ..+||+++|+++.      +++++|++  |.|+++
T Consensus        32 ~~~i~l~~~~~~--~~---~~~~~~~a~~~~~~~-~-~~y~~~~-~~~lr~~ia~~~~------~~~~~i~~--t~G~~~   95 (367)
T PRK02731         32 ADIIKLASNENP--LG---PSPKAIEAIRAAADE-L-HRYPDGS-GFELKAALAEKFG------VDPERIIL--GNGSDE   95 (367)
T ss_pred             CceEEecCCCCC--CC---CCHHHHHHHHHHHHh-h-cCCCCCc-HHHHHHHHHHHhC------cCHHHEEE--cCCHHH
Confidence            479999999753  12   245566666655432 2 5686554 4799999999972      34689988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++.  ..++.+||.|++++|+|..+...++..|++++.++.   +++++|++.+++.+++   ++++++++||||||
T Consensus        96 ~l~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~~---~~~~v~l~~p~npt  167 (367)
T PRK02731         96 ILELLA--RAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVTP---RTRLVFIANPNNPT  167 (367)
T ss_pred             HHHHHH--HHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc---cCCCCCHHHHHHHhCC---CCcEEEEeCCCCCC
Confidence            988873  344679999999999999999888999999999987   3578999999998863   45677789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|++.++ +++++|+||+|.++.+++..  ..++ ...+..+++++++||||.||++|+|+||+  +++ 
T Consensus       168 G~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~--~~~~-~~~~~~~~~i~~~S~SK~~g~~G~RiG~l--~~~-  240 (367)
T PRK02731        168 GTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDY--EDGL-ELVAKFPNVVVTRTFSKAYGLAGLRVGYG--IAP-  240 (367)
T ss_pred             CcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCc--ccHH-HHHhhcCCEEEEeeehHhhcCcccceeee--eCC-
Confidence            99999999999998875 69999999999998875321  2223 33355678999999999999999999999  665 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++    ++++++....  ..+.+.++|.++..+|+.
T Consensus       241 ~~----~~~~l~~~~~--~~~~~~~~~~~a~~~l~~  270 (367)
T PRK02731        241 PE----IIDALNRVRQ--PFNVNSLALAAAVAALDD  270 (367)
T ss_pred             HH----HHHHHHHccC--CCCCCHHHHHHHHHHhCC
Confidence            66    5566655543  246788999999888864

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.97  E-value=1.5e-30  Score=246.58  Aligned_cols=197  Identities=16%  Similarity=0.164  Sum_probs=152.7

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV  199 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~  199 (363)
                      ..| |..-..+||+++|+++..      .+++|++  |+|+++++.++..   .+.+| .|++++|+|+.|...++..|+
T Consensus        35 ~~Y-p~~~~~~lr~~ia~~~~~------~~~~I~i--t~Gs~~~l~~~~~---~~~~~-~vv~~~P~y~~y~~~~~~~G~  101 (332)
T PRK06425         35 SIY-PEISYTDIEDQIKIYTQG------LKIKVLI--GPGLTHFIYRLLS---YINVG-NIIIVEPNFNEYKGYAFTHGI  101 (332)
T ss_pred             ccC-cCcCHHHHHHHHHHHhCC------CcceEEE--CCCHHHHHHHHHH---HhCCC-cEEEeCCChHHHHHHHHHcCC
Confidence            457 555678999999999643      3688988  9999999998843   35676 477779999999999999999


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.+|+++   +++|.+.+++      .+++++++||||||||.+++.+++++|+++|++++++||+||+|.+|.++. 
T Consensus       102 ~v~~vp~~~---~~~~~~~l~~------~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~-  171 (332)
T PRK06425        102 RISALPFNL---INNNPEILNN------YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR-  171 (332)
T ss_pred             eEEEEeCCc---ccCcHHHHhh------cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc-
Confidence            999999842   3556554432      135567778999999999999999999999999999999999999998652 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHH
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGI  351 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~  351 (363)
                         ..+...+.+..+++++++||||.||+||+|+||+  +++ ++    +++.+.+....+  ..+...+.+
T Consensus       172 ---~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~--v~~-~~----li~~l~~~~~~~--~~~~~~~~~  231 (332)
T PRK06425        172 ---AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYI--ATD-DY----NMKISRKITEPW--SVCDPAIDF  231 (332)
T ss_pred             ---chhHHHHhccCCCEEEEeecHHhcCCchhhheee--ecC-HH----HHHHHHHcCCCC--ccCHHHHHH
Confidence               1233444455579999999999999999999999  776 66    566666543322  334444443

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.97  E-value=2.5e-30  Score=245.01  Aligned_cols=239  Identities=18%  Similarity=0.174  Sum_probs=182.5

Q ss_pred             CCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCc
Q 017967           67 PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV  146 (363)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~  146 (363)
                      +.++..+.+++.. +.++.++|+.|++.  .    .++... ...     ....+|++..| +++|+++++++.      
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~----~~~~~~-~~~-----~~~~~y~~~~~-~~lr~~la~~~~------   61 (330)
T TIGR01140         2 GGNLRRAAARYGI-PPEDWLDFSTGINP--L----GPPVPP-IPA-----SAWARYPDPEY-DELRAAAAAYYG------   61 (330)
T ss_pred             CccHHHHHHHcCC-ChhheeEccccCCC--C----CCChhh-cch-----HHHhhCCCccH-HHHHHHHHHHhC------
Confidence            4567777777543 34578999999852  1    112111 111     12266866665 999999999963      


Q ss_pred             ccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC
Q 017967          147 LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (363)
Q Consensus       147 ~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (363)
                      +++++|++  |.|+++++.++.   ..+.+| .|++++|+|..+...++..|++++.++         |++.+++.+.  
T Consensus        62 ~~~~~i~~--t~G~~~~i~~~~---~~l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~~--  124 (330)
T TIGR01140        62 LPAASVLP--VNGAQEAIYLLP---RLLAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALE--  124 (330)
T ss_pred             CChhhEEE--CCCHHHHHHHHH---HHhCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhcc--
Confidence            34789988  999999988863   335677 799999999999999999999998886         7888888774  


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc
Q 017967          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (363)
Q Consensus       227 ~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  306 (363)
                       + ..++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+..      ++..+.+..+++++++||||.|
T Consensus       125 -~-~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~------~~~~~~~~~~~~i~~~S~SK~~  196 (330)
T TIGR01140       125 -E-LDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA------SLAPQAARFPGLVVLRSLTKFF  196 (330)
T ss_pred             -c-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc------chhhHhccCCCEEEEEecchhh
Confidence             2 3467779999999999999999999999999999999999999987541      2223334457899999999999


Q ss_pred             ccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      |++|+|+||+  +++ ++    +++.+.....  ..+++.++|.++..++++.
T Consensus       197 g~~G~R~G~i--~~~-~~----~~~~l~~~~~--~~~~s~~~q~~~~~~l~~~  240 (330)
T TIGR01140       197 GLAGLRLGFV--VAH-PA----LLARLREALG--PWTVNGPARAAGRAALADT  240 (330)
T ss_pred             cCchhhhhhe--eCC-HH----HHHHHHhcCC--CCCchHHHHHHHHHHHhch
Confidence            9999999999  665 66    4555555432  3467889999999888743

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=1.5e-30  Score=248.87  Aligned_cols=227  Identities=15%  Similarity=0.130  Sum_probs=173.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      +.++|+.+++.  .++   ++.+     ..  .. ...|++ .+.++||+++|+++.      +++++|++  |+|++++
T Consensus        32 ~~~~l~~ne~~--~~~---~~~~-----~~--~~-~~~Yp~-~~~~~Lr~aia~~~~------~~~~~I~i--t~Gs~~~   89 (354)
T PRK04635         32 GDIWINANESP--FNN---EYKL-----DL--AR-LNRYPE-CQPPELINAYSAYAG------VAPEQILT--SRGADEA   89 (354)
T ss_pred             CcEEeeCCCCC--CCC---Chhh-----hh--HH-hccCCC-CCHHHHHHHHHHHhC------cCHHHEEE--eCCHHHH
Confidence            56899988852  111   1222     11  11 256855 468999999999852      45899988  9999999


Q ss_pred             HHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          164 LRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       164 l~l~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      +.++..  ..+.+| |.|+++.|+|+.|...++..|++++.+|++  +++.+|++.+++ +    ++++++++|||||||
T Consensus        90 i~~~~~--~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~--~~~~~~~~~l~~-~----~~~~li~i~nP~NPT  160 (354)
T PRK04635         90 IELLIR--AFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLT--ADYQLPLDYIEQ-L----DGAKLVFICNPNNPT  160 (354)
T ss_pred             HHHHHH--HhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecC--CCCCCCHHHHHh-c----cCCCEEEEeCCCCCC
Confidence            999843  346788 899999999999999999999999999984  357889988863 3    245677789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|++.|+  +++||+||+|.+|....      +...+....+++++++||||.||++|+|+||+  +++ 
T Consensus       161 G~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~~------s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~--i~~-  229 (354)
T PRK04635        161 GTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPEY------SVADLLASYPNLVVLRTLSKAFALAGARCGFT--LAN-  229 (354)
T ss_pred             CccCCHHHHHHHHHhCC--CcEEEEeCchHhhccCc------chHHHHhhCCCEEEEechHHHhhhhHHHHhhh--hCC-
Confidence            99999999999998876  49999999999987431      23333455688999999999999999999999  665 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++    +++.+.....  ..+.+.+.|.++..+|.+
T Consensus       230 ~~----~~~~l~~~~~--~~~~~~~~~~~a~~~l~~  259 (354)
T PRK04635        230 EE----LIEILMRVIA--PYPVPLPVSEIATQALSE  259 (354)
T ss_pred             HH----HHHHHHhhcC--CCCCCHHHHHHHHHHHhc
Confidence            66    5555554432  346778888888777754

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.97  E-value=3e-30  Score=245.95  Aligned_cols=238  Identities=16%  Similarity=0.203  Sum_probs=185.3

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+|++|.+.     ..+++.+.+++.+....  ...|++..| +++|+++|+++.      +++++|++  |.|+++
T Consensus        19 ~~~i~l~~~~~~-----~~~~~~~~~a~~~~~~~--~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~--~~G~~~   82 (346)
T TIGR01141        19 KEVIKLNSNENP-----FGPPPKAKEALRAEADK--LHRYPDPDP-AELKQALADYYG------VDPEQILL--GNGSDE   82 (346)
T ss_pred             CceEEccCCCCC-----CCCCHHHHHHHHHhHHH--hhcCCCCCH-HHHHHHHHHHhC------cChHHEEE--cCCHHH
Confidence            379999999862     22345666666654421  256866666 899999999974      34689988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++  +..++.+||+|++++|+|+.+...++..|++++.+++++  ++.+|++.+++.+.   ++++++++++|||||
T Consensus        83 ~l~~~--~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~~~---~~~~~v~l~~p~Npt  155 (346)
T TIGR01141        83 IIELL--IRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDE--DGQLDLEDILVAID---DKPKLVFLCSPNNPT  155 (346)
T ss_pred             HHHHH--HHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCC--CCCCCHHHHHHhcC---CCCCEEEEeCCCCCC
Confidence            98877  344467999999999999999988999999999999843  36799999998764   346677789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++.++++.++ +++++|+||+|.++....   ....   +....+++++++||||.||++|+|+||+  +++ 
T Consensus       156 G~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~---~~~~---~~~~~~~~i~~~S~sK~~g~~G~r~G~~--~~~-  225 (346)
T TIGR01141       156 GNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP---STLP---LLAEYPNLIVLRTLSKAFGLAGLRIGYA--IAN-  225 (346)
T ss_pred             CCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc---cHHH---HHhhCCCEEEEehhhHhhhchhhhceee--ecC-
Confidence            99999999999999887 799999999999877531   1111   2233468999999999999999999999  664 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ++    ++++++....  ..+.+.++|.++..+++..
T Consensus       226 ~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~  256 (346)
T TIGR01141       226 AE----IIDALNKVRA--PFNLSRLAQAAAIAALRDD  256 (346)
T ss_pred             HH----HHHHHHhccC--CCCCCHHHHHHHHHHhCCH
Confidence            66    5566655433  3467889999988877654

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK07908 hypothetical protein; Provisional

Probab=99.97  E-value=1e-29  Score=242.67  Aligned_cols=232  Identities=17%  Similarity=0.131  Sum_probs=173.9

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      .....++.++|+.|++.     ..+++.+.+++.+....  ..+|++..|..+||+++++++.      +++++|++  |
T Consensus        17 ~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~~~------~~~~~I~i--t   81 (349)
T PRK07908         17 DQDAGPGLLDFAVNVRH-----DTPPEWLRERLAARLGD--LAAYPSTEDERRARAAVAARHG------RTPDEVLL--L   81 (349)
T ss_pred             cccCCCCeEEecCCCCC-----CCCCHHHHHHHHHHhhH--hhcCCCccchHHHHHHHHHHhC------cChhhEEE--C
Confidence            33444689999998852     23456677776655432  2679888899999999999963      35789988  9


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcC
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~  237 (363)
                      .|+++++.++..    +.+ +.++++.|+|..+...++..|++++.+++++  ++++|++.++       +++++++++|
T Consensus        82 ~Ga~~al~~~~~----l~~-~~viv~~P~y~~~~~~~~~~G~~i~~v~~~~--~~~~d~~~l~-------~~~~~i~l~n  147 (349)
T PRK07908         82 AGAAEGFALLAR----LRP-RRAAVVHPSFTEPEAALRAAGIPVHRVVLDP--PFRLDPAAVP-------DDADLVVIGN  147 (349)
T ss_pred             CCHHHHHHHHHh----cCC-CeEEEeCCCChHHHHHHHHcCCEEEeeccCc--ccCcChhHhc-------cCCCEEEEcC
Confidence            999999988733    556 4677889999999999999999999999853  3788887542       2355788899


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       238 p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                      ||||||.+++.+++.++   |+ ++.++|+||+|.++..+.    ..++...  ..+++++++||||.||++|+|+||+ 
T Consensus       148 p~NPTG~~~~~~~l~~l---~~-~~~~iIvDe~y~~~~~~~----~~~l~~~--~~~~~i~i~S~SK~~~l~GlRiG~~-  216 (349)
T PRK07908        148 PTNPTSVLHPAEQLLAL---RR-PGRILVVDEAFADAVPGE----PESLAGD--DLPGVLVLRSLTKTWSLAGLRVGYA-  216 (349)
T ss_pred             CCCCCCCCcCHHHHHHH---Hh-cCCEEEEECcchhhccCC----ccccccc--cCCCEEEEeecccccCCccceeeee-
Confidence            99999999998876665   54 578888999999986432    2232221  2357999999999999999999999 


Q ss_pred             EeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          318 VVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       318 ~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       +++ ++    +++++......  .+.+.+.|.++..+++
T Consensus       217 -~~~-~~----~~~~~~~~~~~--~~~~~~~~~a~~~~~~  248 (349)
T PRK07908        217 -LGA-PD----VLARLTRGRAH--WPVGTLQLEAIAACCA  248 (349)
T ss_pred             -ecC-HH----HHHHHHhcCCC--CCccHHHHHHHHHHhc
Confidence             665 66    55656554332  4667777887777665

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.97  E-value=1.3e-29  Score=242.82  Aligned_cols=247  Identities=17%  Similarity=0.182  Sum_probs=181.4

Q ss_pred             hhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC
Q 017967           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (363)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~  149 (363)
                      +....+.+..+. .++|+|+.|++.     ..+++.+.+++.+.... . ..|++.. ..++|+++|+++.      +++
T Consensus        22 ~~~~~~~~~~~~-~~~i~l~~~~~~-----~~~~~~~~~~~~~~~~~-~-~~y~~~~-~~~lr~~ia~~~~------~~~   86 (361)
T PRK00950         22 KEEIAREYGIDP-ESIIKLGSNENP-----LGPSPKAVEAIEKELSK-I-HRYPEPD-APELREALSKYTG------VPV   86 (361)
T ss_pred             HHHHHHHhCCCc-cceEEccCCCCC-----CCCCHHHHHHHHHHHHh-h-cCCCCCC-HHHHHHHHHHHhC------CCH
Confidence            434444444332 278999998752     11345566665554432 2 5676554 4999999999973      236


Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      ++|++ .+.|+++++.++.  ...+.+||.|++++|+|+.+...++..|++++.++.  ++++++|++.+++.+..   +
T Consensus        87 ~~i~~-~~~Ga~~~i~~~~--~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~~---~  158 (361)
T PRK00950         87 ENIIV-GGDGMDEVIDTLM--RTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKR--EEDFSLDVDSVLNAITE---K  158 (361)
T ss_pred             HHEEE-eCCCHHHHHHHHH--HHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec--CCCCCcCHHHHHHHhcc---C
Confidence            77754 1467788887773  334579999999999999999999999999999985  34678999999998863   4


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ++++++++||||||.+++.+++.+|   |+++|+++|+||+|.+|...       ....+.+..+++++++||||.||++
T Consensus       159 ~~~v~~~~p~nptG~~~~~~~l~~l---~~~~~~~li~De~y~~~~~~-------~~~~~~~~~~~vi~~~S~SK~~g~~  228 (361)
T PRK00950        159 TKVIFLCTPNNPTGNLIPEEDIRKI---LESTDALVFVDEAYVEFAEY-------DYTPLALEYDNLIIGRTFSKVFGLA  228 (361)
T ss_pred             CCEEEEeCCCCCCCCCcCHHHHHHH---HHHCCcEEEEECchhhhCcc-------chHHHHHhcCCEEEEEeehHhhcCc
Confidence            5577778999999999999987776   56789999999999988622       1222334557899999999999999


Q ss_pred             cccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       310 G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |+|+||+  +++ ++    +++.+++....  .+.+.++|.++..+|++
T Consensus       229 GlRiG~~--~~~-~~----~~~~~~~~~~~--~~~~~~~~~~a~~~l~~  268 (361)
T PRK00950        229 GLRIGYG--FVP-EW----LIDYYMRAKTP--FSLTRLSQAAAIAALSD  268 (361)
T ss_pred             hhhcchh--cCC-HH----HHHHHHHhcCC--CCCCHHHHHHHHHHhcC
Confidence            9999999  765 66    56666655432  35778999988887764

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.94  E-value=3.6e-25  Score=217.30  Aligned_cols=268  Identities=10%  Similarity=0.066  Sum_probs=186.7

Q ss_pred             CCCCCchhhHHHH---HhcCCCCCcEEeeccccC-CCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHH
Q 017967           64 MAPPDPILGVSEA---FKADTDEKKLNLGVGAYR-TEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELL  139 (363)
Q Consensus        64 ~~~~~~~~~~~~~---~~~~~~~~~i~l~~g~~~-~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l  139 (363)
                      ..++..+..+.++   ++... .+.++|++|++. |..++... ..+.++....+..+. .+|++..|.++||+++++++
T Consensus        15 ~v~~~~~~~~~~~~~~l~~~g-~~~~~L~~g~p~~D~~tds~t-~a~~~a~~~a~~~g~-~~Y~~~~g~~~Lreaia~~~   91 (460)
T PRK13238         15 MVEPIRLTTREERERALAEAG-YNPFLLKSEDVFIDLLTDSGT-GAMSDRQWAAMMRGD-EAYAGSRSYYRLEDAVKDIF   91 (460)
T ss_pred             eeccccccCHHHHHHHHHHcC-CCEEeCCCCCCCCCCCCCCCc-hhhhHHHHHHHHhCC-cccCCCCCHHHHHHHHHHHh
Confidence            3444444444433   33333 389999999973 33332211 245555444443333 67999999999999999997


Q ss_pred             hcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccC------CCC-
Q 017967          140 FGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP------KTV-  212 (363)
Q Consensus       140 ~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~------~~~-  212 (363)
                      ..        +++++  |.||++|+.++  +..++.||| |++++|.|..|...++..|.+++.+++++.      +.+ 
T Consensus        92 ~~--------~~vv~--t~ggt~A~~~~--~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~  158 (460)
T PRK13238         92 GY--------PYTIP--THQGRAAEQIL--FPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFK  158 (460)
T ss_pred             CC--------CcEEE--CCCHHHHHHHH--HHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEecccccccccccccc
Confidence            43        46766  99999999988  555688999 999999999999999999999999998531      233 


Q ss_pred             -CCCHHHHHHHHHcCC-CCcEEEEEcCCCCCCC-CCCCHHHHHHHHHHHHhcCCeEEEecCCC--CCcCCCC---CCchh
Q 017967          213 -GLDFEGMIADIKAAP-GGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQ--GFASGSL---DNDAS  284 (363)
Q Consensus       213 -~~d~~~l~~~l~~~~-~~~~~~~i~~p~NPTG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~--~~~~~~~---~~~~~  284 (363)
                       .+|++.|++.+++.. ++++++++++|||||| .+++.+++++|.++|++||+++|+|+++.  ...+...   .....
T Consensus       159 g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~  238 (460)
T PRK13238        159 GNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDK  238 (460)
T ss_pred             CCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCC
Confidence             499999999998532 3578899999999997 99999999999999999999999999652  2222110   00112


Q ss_pred             HHHHHHhcCCeEEEEEcCccccccccccce-----EEEEeeCChhHHHHHHHHHHhhh-----ccccCCCchHHHHHHhc
Q 017967          285 SVRLFATRGMELLVAQSYSKNLGLYAERIG-----AMNVVCSSSDLAARVKSQLKRLA-----RPMYSNPPPMLLGIQLS  354 (363)
Q Consensus       285 ~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG-----~i~~v~~~~~~~~~~~~~l~~~~-----~~~~~~~s~~~q~~~~~  354 (363)
                      ++..+      +..++|++|.+.++|+|+|     ++ +++++++    +.+.++...     ..++.+.+...|.+++.
T Consensus       239 si~~i------~~~~~s~~D~~~~Sg~K~g~~~~GG~-i~~~d~~----l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~  307 (460)
T PRK13238        239 SIKEI------AREMFSYADGLTMSAKKDAMVNIGGL-LCFRDED----LFTECRTLCILYEGFPTYGGLAGRDMEALAV  307 (460)
T ss_pred             CHHHH------hhhhcccCcEEEEecccCCCCcceeE-EEcChHH----HHHHhhhcccccCCcccccCcHHHHHHHHHh
Confidence            22222      3445788888888888874     33 1444456    445454442     23455667777888887


Q ss_pred             cccc
Q 017967          355 SMNG  358 (363)
Q Consensus       355 ~l~~  358 (363)
                      .|.+
T Consensus       308 ~l~e  311 (460)
T PRK13238        308 GLYE  311 (460)
T ss_pred             hHHH
Confidence            6654

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.94  E-value=2.7e-25  Score=210.94  Aligned_cols=251  Identities=20%  Similarity=0.218  Sum_probs=187.1

Q ss_pred             EEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHH
Q 017967           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (363)
Q Consensus        86 i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (363)
                      +||+.|.|.     ....+.+..+............|.+..|..++++.+++++....+....++++++  +.|+++++.
T Consensus         1 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~--~~~~t~a~~   73 (350)
T cd00609           1 IDLSIGEPD-----FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVV--TNGAQEALS   73 (350)
T ss_pred             CCCCCCCCC-----CCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEE--ecCcHHHHH
Confidence            477888763     1223333333332122223367888999999999999999877665555678877  999999988


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCH--HHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          166 LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF--EGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       166 l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~--~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                      .+  +.....+||+|+++.|+|..+...++..|.+++.++.++.  ...+.  +.+++...   +++.++++++++||||
T Consensus        74 ~~--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~tG  146 (350)
T cd00609          74 LL--LRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEE--GGFLLDLELLEAAKT---PKTKLLYLNNPNNPTG  146 (350)
T ss_pred             HH--HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEecccc--cCCccCHHHHHhhcC---ccceEEEEECCCCCCC
Confidence            87  4444568999999999999999999999999999998533  33433  45554433   3466777788999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      .+++.+++++|+++|+++|+++|+|++|.++.+.....   ......+....+++++|++|.++++|.|+||+  +++++
T Consensus       147 ~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i--~~~~~  221 (350)
T cd00609         147 AVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPP---PALALLDAYERVIVLRSFSKTFGLPGLRIGYL--IAPPE  221 (350)
T ss_pred             cccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccc---ccccCcCccCcEEEEeecccccCCcccceEEE--ecCHH
Confidence            99999999999999999999999999999887653211   11111234467899999999999899999999  77643


Q ss_pred             hHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          324 DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       324 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      +    +.+.+.........+++..+|.++..+|+..
T Consensus       222 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  253 (350)
T cd00609         222 E----LLERLKKLLPYTTSGPSTLSQAAAAAALDDG  253 (350)
T ss_pred             H----HHHHHHHHHHhcccCCChHHHHHHHHHHhCc
Confidence            6    5555665555556788999999888877654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.92  E-value=5.3e-24  Score=194.37  Aligned_cols=247  Identities=20%  Similarity=0.162  Sum_probs=194.8

Q ss_pred             ccHHHHHHHHHHHc-cCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEE
Q 017967          102 VLDVVKKAENLMLE-RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (363)
Q Consensus       102 ~~~~v~~a~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~V  180 (363)
                      +.+++..+.+-+-+ .+....|...+|++-.|+.+|+|+.+++|.+.+|++|++  |.|++.|+..+..++. ..+.+.|
T Consensus        88 p~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~L--T~GAS~ai~~il~l~~-~~~~~Gv  164 (475)
T KOG0258|consen   88 PTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFL--TTGASPAIRSILSLLI-AGKKTGV  164 (475)
T ss_pred             CHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeee--cCCCcHHHHHHHHHHh-cCCCCce
Confidence            34455555443322 334577999999999999999999999999899999988  9999999998854431 2377999


Q ss_pred             EEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC--CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHH
Q 017967          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP--GGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (363)
Q Consensus       181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~--~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~  258 (363)
                      +||-|.|+-|...+..+|...++|-++++.+|.+|.++|++.+.++.  -++.++++-||.||||.+++++-+++|+.+|
T Consensus       165 liPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa  244 (475)
T KOG0258|consen  165 LIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFA  244 (475)
T ss_pred             EeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHH
Confidence            99999999999999999999999999888999999999999887743  2456777789999999999999999999999


Q ss_pred             HhcCCeEEEecCCCCCcCCCCCCchhHHHHHH-hc------CCeEEEEEcCcccc-ccccccceEEEEeeCChhHHHHHH
Q 017967          259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TR------GMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       259 ~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~------~~~vi~~~S~SK~~-~l~G~RvG~i~~v~~~~~~~~~~~  330 (363)
                      .+++++++.||+|++-.|.+. ..++++...+ +.      ...++.++|.||.+ |=.|.|-||+-++.-+++    +.
T Consensus       245 ~~~~l~llaDEVYQ~Nvy~~~-skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~pr----v~  319 (475)
T KOG0258|consen  245 AEEGLVLLADEVYQDNVYTTG-SKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPR----VK  319 (475)
T ss_pred             HHcCeEEechHHHHhhccCCC-cchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChh----HH
Confidence            999999999999999998742 3466665543 11      12466678999987 558999999977776776    55


Q ss_pred             HHHHhhhccccCCCchHHHHHHhcccc
Q 017967          331 SQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       331 ~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +++.++. ..-.+++..+|..+-...+
T Consensus       320 ~qi~Kl~-si~lc~~V~GQ~~vdl~Vn  345 (475)
T KOG0258|consen  320 QQIKKLA-SIKLCPQVSGQKLVDLVVN  345 (475)
T ss_pred             HHHHHHH-hhhhcCCccchhhhceecC
Confidence            5555443 2334777778877655443

>PRK07049 methionine gamma-lyase; Validated

Probab=99.91  E-value=1.6e-22  Score=197.30  Aligned_cols=199  Identities=20%  Similarity=0.170  Sum_probs=153.3

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (363)
                      +......|++++|++. +       .+++++  +.||++|+.++  +..++.+||.|+++.|+|+.+...+    +..|+
T Consensus        81 ~~Pt~~~Le~~lA~le-g-------~~~~iv--~~sG~~Ai~~~--l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi  148 (427)
T PRK07049         81 NHPNSEIVEDRLAVYE-G-------AESAAL--FSSGMSAIATT--LLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV  148 (427)
T ss_pred             CCcCHHHHHHHHHHHh-C-------CCcEEE--EccHHHHHHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc
Confidence            4556789999999995 3       245666  89999997777  5667889999999999999997764    46798


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcC--CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHh---cCCeEEEecCCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAA--PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE---KNHIPFFDVAYQGF  274 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~--~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~---~~~~ii~De~y~~~  274 (363)
                      +++.++.      +.|++.+++.+.+.  .++++++++++||||||.+++.+++.+|++.|+.   +++++|+||+|..+
T Consensus       149 ~~v~~~~------~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~  222 (427)
T PRK07049        149 GAVGFAD------GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGP  222 (427)
T ss_pred             EEEEEeC------CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccc
Confidence            8777762      35778888777531  1356788889999999999999999999988754   68999999998765


Q ss_pred             cCCCCCCchhHHHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHh
Q 017967          275 ASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQL  353 (363)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~  353 (363)
                      ....      +.    .. ...++++||||.+| .+|+|+||+  +++ ++    +++.+.........+.+++.|.++.
T Consensus       223 ~~~~------pl----~~-g~divv~S~SK~~gG~~glr~G~v--v~~-~~----l~~~l~~~~~~~g~~ls~~~a~l~~  284 (427)
T PRK07049        223 VFQK------PL----EH-GADLSVYSLTKYVGGHSDLVAGAV--LGR-KA----LIRQVRALRSAIGTQLDPHSCWMLG  284 (427)
T ss_pred             ccCC------cc----cc-CCCEEEEcCceeecCCCCcEEEEE--ECC-HH----HHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            4321      11    11 34688889999999 699999999  654 66    5555665555566789999999998


Q ss_pred             ccccc
Q 017967          354 SSMNG  358 (363)
Q Consensus       354 ~~l~~  358 (363)
                      +.|+.
T Consensus       285 r~L~t  289 (427)
T PRK07049        285 RSLET  289 (427)
T ss_pred             cCCCh
Confidence            88764

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.90  E-value=1.5e-22  Score=179.21  Aligned_cols=264  Identities=17%  Similarity=0.142  Sum_probs=187.1

Q ss_pred             hhhHHHHH-hcCCCCCcEEeeccccCCCCCCccccHHHHHHHH----HHHcc----CCCCCCCCCcchHHHHHHHHHHHh
Q 017967           70 ILGVSEAF-KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN----LMLER----GENKEYLPIEGLAAFNKVTAELLF  140 (363)
Q Consensus        70 ~~~~~~~~-~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~----~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~  140 (363)
                      |.+++... +.-..++.|.|+.|.|.       ..|.+.+..+    +++..    ....+|..++|...|.++++..+.
T Consensus        16 i~~lMdDl~d~Lrt~g~imLggGNPa-------~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~   88 (417)
T COG3977          16 ITQLMDDLNDGLRTPGAIMLGGGNPA-------RIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLR   88 (417)
T ss_pred             HHHHHHHHHhhccCCCceeeCCCCcc-------cChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHH
Confidence            34444433 23344689999988752       2344444443    33322    234789999999999999999999


Q ss_pred             cCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC-CCC--EE-EEcCCCCcchHHHHhhCCCCeEEEe---cccCC--C
Q 017967          141 GADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF-PGA--KV-LISSPTWGNHKNIFNDARVPWSEYR---YYDPK--T  211 (363)
Q Consensus       141 ~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~-~gd--~V-lv~~P~y~~~~~~~~~~G~~~~~v~---~~~~~--~  211 (363)
                      +.+|+.++++||.+  |+|++.+...++.++.-.. .|+  +| +-..|.|.+|..+...-..=|..-|   ..+..  .
T Consensus        89 ~~ygwnit~~NIal--TnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g~FK  166 (417)
T COG3977          89 REYGWNITAQNIAL--TNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAGQFK  166 (417)
T ss_pred             HHhCCCCccceeee--cCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCccccccccee
Confidence            99999999999988  9999999888865544332 343  34 4456899888765432111111111   11111  2


Q ss_pred             CCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh
Q 017967          212 VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (363)
Q Consensus       212 ~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  291 (363)
                      +.+|++.+.-  .   +.+..++++.|.||||.+++.+|+.+|..++++||+.+|+|.+|..-..+-.   +..+.  .-
T Consensus       167 Y~vDF~~l~i--~---e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~ii---fsd~~--~~  236 (417)
T COG3977         167 YHVDFEHLHI--G---ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGII---FSDAT--PL  236 (417)
T ss_pred             eccCHHHccc--c---cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCcee---ccccc--cc
Confidence            5678888753  2   3566888899999999999999999999999999999999999964321100   00111  12


Q ss_pred             cCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       292 ~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      -.++++.+.|+|| +|+||.|.|.+  ++ +++    +++.+..........+..+++.+++.+++..+
T Consensus       237 w~~NiilC~SLSK-~GLPG~R~GIi--Ia-ne~----viqaitnmn~iisLap~~~G~Aia~~mie~gd  297 (417)
T COG3977         237 WNENIILCMSLSK-LGLPGSRCGII--IA-NEK----VIQAITNMNGIISLAPGRMGPAIAAEMIESGD  297 (417)
T ss_pred             CCCCEEEEeehhh-cCCCCcceeEE--Ec-cHH----HHHHHHhccceeeecCCCccHHHHHHHhhcch
Confidence            4589999999999 78999999999  65 577    78888888777778999999999999887654

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.90  E-value=1.6e-23  Score=182.14  Aligned_cols=189  Identities=19%  Similarity=0.173  Sum_probs=154.6

Q ss_pred             CcccCCcEEEEeccchhHHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHH
Q 017967          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      .+.++++|++  ..|+.+.+.++  +.+.+.|| ++|+...|+|+.|.-.+.-++++++.+|.  ..+|.++.|.+.+.+
T Consensus        82 kpLt~dnic~--GvGsDE~ID~i--iR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl--~pdF~lnvdai~evl  155 (375)
T KOG0633|consen   82 KPLTSDNICV--GVGSDELIDLI--IRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPL--NPDFSLNVDAIAEVL  155 (375)
T ss_pred             CCCCccceEE--ecCcHHHHHHH--HhheecCCccceeecCCcceeEEEEeecCCceEEEecC--CCCccccHHHHHHHH
Confidence            4577899988  99999999888  44446699 89999999999998888889999999998  458999999999999


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCc
Q 017967          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  303 (363)
                      +... ..+++++++|+||||..+..+++++|++.-.  |.++++||+|-+|....      +-..+....++++++++||
T Consensus       156 ~~ds-~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFsg~~------S~~~lV~kYpNLivlqTlS  226 (375)
T KOG0633|consen  156 ELDS-KIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFSGVE------SRMKLVKKYPNLIVLQTLS  226 (375)
T ss_pred             hccc-cceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeecccc------ccchHhHhCCceeehhhhh
Confidence            8643 4678888999999999999999999976433  78999999999998632      2333457789999999999


Q ss_pred             cccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       304 K~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |.||++|+|+||-  ..+ ..    +.+-+..++.  -++.|..+..++..+|.
T Consensus       227 KsfGLAGiRvG~~--~~~-~~----ia~iln~~Ka--PYNiS~~~s~~AL~Als  271 (375)
T KOG0633|consen  227 KSFGLAGIRVGYG--AFP-LS----IAEILNRAKA--PYNISVAGSVAALAALS  271 (375)
T ss_pred             hhcCcceeEeecc--ccc-HH----HHHHHHhccC--CccccchhHHHHHHhcC
Confidence            9999999999999  555 44    5555665544  34778778777777665

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.89  E-value=2.1e-21  Score=188.38  Aligned_cols=222  Identities=10%  Similarity=0.064  Sum_probs=160.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      +.+.|..+++.-.-..+---..+.++....+..+. ..|++..|.++|++++++++..        +++++  |.||++|
T Consensus        12 n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd-~~Y~~~~g~~~Leeaia~~~g~--------~~vv~--t~~Gt~A   80 (431)
T cd00617          12 NVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGD-EAYAGSKSFYDLEDAVQDLFGF--------KHIIP--THQGRGA   80 (431)
T ss_pred             CEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCC-CccCCCCCHHHHHHHHHHHHCC--------CeEEE--cCCHHHH
Confidence            78888888762111111111234333333332333 5699999999999999999733        46777  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCC--------CCCCCHHHHHHHHHcC-CCCcEEEE
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--------TVGLDFEGMIADIKAA-PGGSFILL  234 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~--------~~~~d~~~l~~~l~~~-~~~~~~~~  234 (363)
                      +.++  +..++.|||.| +++|+|..+...+...|.+++.++++...        .+.+|++.+++.+++. .+++++++
T Consensus        81 l~la--~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~  157 (431)
T cd00617          81 ENIL--FSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIV  157 (431)
T ss_pred             HHHH--HHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEE
Confidence            9988  45567899987 69999999999999999999999986432        3559999999999853 22366788


Q ss_pred             EcCCCCCC-CCCCCHHHHHHHHHHHHhcCCeEEEecCCCC--CcC-----CCCCCchhHHHHHHhcCCeEEEEEcCcccc
Q 017967          235 HGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG--FAS-----GSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (363)
Q Consensus       235 i~~p~NPT-G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~--~~~-----~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  306 (363)
                      +++||||+ |..++.+++++|.++|+++|+++|+|++..-  ..+     ++  ....++..      .++.++|+||.+
T Consensus       158 v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g--~~~~si~e------i~~e~~s~sd~~  229 (431)
T cd00617         158 LTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEG--YRDKSIAE------IAREMFSYADGC  229 (431)
T ss_pred             EECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhccccc--ccCCCHHH------HHHHhhccCCEE
Confidence            89999998 9999999999999999999999999999321  111     11  01112222      245578899999


Q ss_pred             cccccc------ceEEEEeeCChhHHHHH
Q 017967          307 GLYAER------IGAMNVVCSSSDLAARV  329 (363)
Q Consensus       307 ~l~G~R------vG~i~~v~~~~~~~~~~  329 (363)
                      .+.|+|      .||+  ++++++.++++
T Consensus       230 ~mS~~K~~~~~~GG~i--~~~d~~l~~~~  256 (431)
T cd00617         230 TMSAKKDGLVNIGGFL--ALRDDELYEEA  256 (431)
T ss_pred             EEEeecCCCCccceEE--EeCcHHHHHHH
Confidence            999998      5588  77766644443

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PLN02242 methionine gamma-lyase

Probab=99.86  E-value=2e-20  Score=181.92  Aligned_cols=189  Identities=17%  Similarity=0.146  Sum_probs=138.8

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-----hCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-----DAR  198 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~G  198 (363)
                      +.....+|++.+|++...        +.+++  ++||++|+.++  +..++.+||.|+++.|.|+.+...+.     ..|
T Consensus        74 ~~Pt~~~LE~~lA~l~g~--------~~~l~--~~sG~~Ai~~a--l~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G  141 (418)
T PLN02242         74 FNPTVLNLGRQMAALEGT--------EAAYC--TASGMSAISSV--LLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCN  141 (418)
T ss_pred             CChhHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH--HHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccC
Confidence            456678999999998533        35555  89999998887  55667899999999999998877653     467


Q ss_pred             CCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCC
Q 017967          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (363)
Q Consensus       199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~  278 (363)
                      ++++.++.       .|++.+++++++  ++++++++++|+||||.+.   ++++|+++|+++|+++|+|++|..+.+..
T Consensus       142 ~~~~~~d~-------~d~e~l~~~i~~--~~tklV~lesp~NPtG~v~---dl~~I~~la~~~gi~livDea~~~~~~~~  209 (418)
T PLN02242        142 ITTTFVDI-------TDLEAVKKAVVP--GKTKVLYFESISNPTLTVA---DIPELARIAHEKGVTVVVDNTFAPMVLSP  209 (418)
T ss_pred             ceEEEcCC-------CCHHHHHHhcCc--CCCEEEEEecCCCCCCccc---CHHHHHHHHHHhCCEEEEECCCCccCCCH
Confidence            77766654       378999998863  2367888899999999987   56778888999999999999998776531


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCccccccccccc-eEEEEeeCChhHHHHHHHHHHhhhc--cccCCCchHHHHHHhcc
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLAR--PMYSNPPPMLLGIQLSS  355 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i~~v~~~~~~~~~~~~~l~~~~~--~~~~~~s~~~q~~~~~~  355 (363)
                              .   .. ...++++||||.++.+|+|+ ||+  +++ ++    +++.+.....  ....+++...|.+...+
T Consensus       210 --------~---~~-g~divv~S~SK~l~g~g~~~gG~i--v~~-~~----li~~l~~~~~~~~~~~g~~~~~~~A~l~~  270 (418)
T PLN02242        210 --------A---RL-GADVVVHSISKFISGGADIIAGAV--CGP-AE----LVNSMMDLHHGALMLLGPTMNPKVAFELS  270 (418)
T ss_pred             --------H---Hc-CCcEEEEeCccccCCCCCceEEEE--EcC-HH----HHHHHHHHhhhhhhccCCCCCHHHHHHHH
Confidence                    1   11 35688999999999899885 888  554 66    3444444432  23345555555555443

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.86  E-value=6.1e-20  Score=177.97  Aligned_cols=210  Identities=11%  Similarity=0.062  Sum_probs=145.9

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCc---ch----HHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE---GL----AAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~---G~----~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      .++|||+.|.|.+...    .+.+.++..+...... .+|++..   |.    .++++++|+++..        +++++ 
T Consensus        38 ~~~i~~~~~~~lg~~~----~~~v~~~~~~~~~~~~-~~~~~s~~~~G~~~~~~~le~~ia~~~g~--------~~~ii-  103 (393)
T TIGR01822        38 REVLNFCANNYLGLSS----HPDLIQAAKDALDEHG-FGMSSVRFICGTQDIHKELEAKIAAFLGT--------EDTIL-  103 (393)
T ss_pred             ceEEEeeCCCccccCC----CHHHHHHHHHHHHHhC-CCCCCcCcccCChHHHHHHHHHHHHHhCC--------CcEEE-
Confidence            3789999998753332    3445555544443211 3455544   64    8899999999743        35655 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC---CCCcEE
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFI  232 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~  232 (363)
                       +.||++|+..+  +..++.+||.|++++|.|+.+...++..+.+.+.++       ..|++.+++.+++.   ..++++
T Consensus       104 -~~~~~~a~~~~--~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~~  173 (393)
T TIGR01822       104 -YASCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGARHRL  173 (393)
T ss_pred             -ECchHHHHHHH--HHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCceE
Confidence             68899998877  445578999999999999999988887777664432       47899999988752   115677


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-CCeEEEEEcCccccccccc
Q 017967          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAE  311 (363)
Q Consensus       233 ~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~l~G~  311 (363)
                      +++.+++||||.+.+   +++|+++|+++|+++|+||+|..-..+ .  ...+.....+. .+..++++||||.++  |+
T Consensus       174 v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~-~--~~~~~~~~~~~~~~~di~~~s~sK~l~--g~  245 (393)
T TIGR01822       174 IATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLG-P--TGRGSHELCGVMGRVDIITGTLGKALG--GA  245 (393)
T ss_pred             EEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcC-C--CCCchHHhcCCCCCCeEEEEEChHHhh--CC
Confidence            888889999999876   667778899999999999998422211 1  11111112221 235688999999875  78


Q ss_pred             cceEEEEeeCChhHHH
Q 017967          312 RIGAMNVVCSSSDLAA  327 (363)
Q Consensus       312 RvG~i~~v~~~~~~~~  327 (363)
                      |+||+  +++ ++.++
T Consensus       246 r~G~~--~~~-~~~~~  258 (393)
T TIGR01822       246 SGGFT--TAR-KEVVE  258 (393)
T ss_pred             CcEEE--EeC-HHHHH
Confidence            99999  665 66333

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.86  E-value=6.6e-20  Score=175.20  Aligned_cols=234  Identities=14%  Similarity=0.020  Sum_probs=153.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-CC-CCCC----CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-NKEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-~~~Y----~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      .+|||+.|.|.   +. ..++.+.+++.+.+.. .. ...|    +......++++++++++..       +++|++  +
T Consensus        17 ~~id~~~~~~~---g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~~~i~~--~   83 (360)
T TIGR00858        17 RLLNFSSNDYL---GL-ASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT-------EAALLF--S   83 (360)
T ss_pred             eEEecccCCcc---cC-CCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-------CCEEEE--C
Confidence            78999998642   21 1235566666555432 11 0112    1223456788999998632       456666  6


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC-CCcEEEEEc
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHG  236 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~  236 (363)
                      .| ++++..+  +...+.+||.|+++.|+|..+...++..|++++.++.       +|++.+++.++... .++++++++
T Consensus        84 ~G-~~~~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~~~  153 (360)
T TIGR00858        84 SG-YLANVGV--ISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIVTD  153 (360)
T ss_pred             ch-HHHHHHH--HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEEEe
Confidence            65 4554443  3344679999999999999999999999999888763       58899999887532 246788889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH--hcCCeEEEEEcCccccccccccce
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA--TRGMELLVAQSYSKNLGLYAERIG  314 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~S~SK~~~l~G~RvG  314 (363)
                      +++||||...+   +++|.++|+++|+++|+||+|..+.++..   ..+.....  ...+++++++||||.||++|   |
T Consensus       154 ~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G  224 (360)
T TIGR00858       154 GVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGED---GRGTLEHFGLKPEPVDIQVGTLSKALGSYG---A  224 (360)
T ss_pred             CCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCC---CCchHHhcCCCccCCcEEEEechhhhhccC---c
Confidence            99999998766   56677789999999999999986655421   11111121  23467999999999999766   9


Q ss_pred             EEEEeeCChhHHHHHHHHHHhhhccc--cCCCchHHHHHHhccc
Q 017967          315 AMNVVCSSSDLAARVKSQLKRLARPM--YSNPPPMLLGIQLSSM  356 (363)
Q Consensus       315 ~i~~v~~~~~~~~~~~~~l~~~~~~~--~~~~s~~~q~~~~~~l  356 (363)
                      |+  +++ ++    +++.+.......  ..+++...+.++...+
T Consensus       225 ~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~al  261 (360)
T TIGR00858       225 YV--AGS-QA----LIDYLINRARTLIFSTALPPAVAAAALAAL  261 (360)
T ss_pred             EE--EcC-HH----HHHHHHHhCccceecCCCCHHHHHHHHHHH
Confidence            98  654 55    455554333322  1234444444443444

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.86  E-value=7.8e-20  Score=177.30  Aligned_cols=193  Identities=18%  Similarity=0.130  Sum_probs=141.9

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~  199 (363)
                      +..+..+|++++|+++..        +++++  ++||++|+.++  +...+.+||+|+++.|.|..+...    ++..|+
T Consensus        62 ~~p~~~~Le~~iA~~~g~--------~~~l~--~~sG~~Ai~~a--l~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~  129 (400)
T PRK06234         62 GNPTSTEVENKLALLEGG--------EAAVV--AASGMGAISSS--LWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV  129 (400)
T ss_pred             CCccHHHHHHHHHHHhCC--------CcEEE--EcCHHHHHHHH--HHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe
Confidence            778899999999999642        34555  79999998776  556678999999999998776544    467899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhc--CCeEEEecCCCCCcCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASG  277 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~--~~~ii~De~y~~~~~~  277 (363)
                      +++.++.       .|++++++++++   +++++++++|+||||.+.+   +++|.++|+++  ++++|+|++|......
T Consensus       130 ~v~~vd~-------~d~e~l~~~i~~---~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~  196 (400)
T PRK06234        130 EVTFVDT-------SNLEEVRNALKA---NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ  196 (400)
T ss_pred             EEEEECC-------CCHHHHHHHhcc---CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC
Confidence            9888875       278999998873   4678888999999999887   55666778886  9999999999876543


Q ss_pred             CCCCchhHHHHHHhcCCeEEEEEcCccccccccccc-eEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccc
Q 017967          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                      .      +.    .. ...+++.|+||.++.+|+|+ ||+  +++ ++.++++....  .........+++...++...|
T Consensus       197 ~------~l----~~-g~Divv~S~sK~l~g~g~~~gG~v--~~~-~~~~~~l~~~~--~~~~~g~~l~p~~a~l~~~~l  260 (400)
T PRK06234        197 R------PL----QL-GADVVVHSATKYLNGHGDVIAGFV--VGK-EEFINQVKLFG--IKDMTGSVIGPFEAFLIIRGM  260 (400)
T ss_pred             C------ch----hh-CCcEEEeeccccccCCCCceeEEE--Eec-HHHHHHHHHHH--HHHhcCCCCCHHHHHHHHhcc
Confidence            1      11    11 34588999999999899886 888  655 56444433211  111223466777777776665


Q ss_pred             c
Q 017967          357 N  357 (363)
Q Consensus       357 ~  357 (363)
                      +
T Consensus       261 ~  261 (400)
T PRK06234        261 K  261 (400)
T ss_pred             C
Confidence            5

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.85  E-value=3.3e-20  Score=176.01  Aligned_cols=225  Identities=17%  Similarity=0.099  Sum_probs=155.8

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEE
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vl  181 (363)
                      +++.+.+++.+.... . ..|++..+..++++.+++++.        ++++++  +.||++++.++  +..++.+||.|+
T Consensus        10 ~~~~v~~a~~~~~~~-~-~~~~~~~~~~~l~~~~a~~~g--------~~~~~~--~~~gt~a~~~~--~~~l~~~gd~v~   75 (338)
T cd06502          10 PTPEMLEAMAAANVG-D-DVYGEDPTTAKLEARAAELFG--------KEAALF--VPSGTAANQLA--LAAHTQPGGSVI   75 (338)
T ss_pred             CCHHHHHHHHhcccC-C-cccCCCHHHHHHHHHHHHHhC--------CCeEEE--ecCchHHHHHH--HHHhcCCCCeEE
Confidence            567787777664322 2 367777788999999999864        245656  78889998777  444467999999


Q ss_pred             EcCCCCcchHH---HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC----CCcEEEEEcCCCCCCCCCCCHHHHHHH
Q 017967          182 ISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP----GGSFILLHGCAHNPTGIDPTPEQWEKI  254 (363)
Q Consensus       182 v~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~----~~~~~~~i~~p~NPTG~~~s~~~~~~i  254 (363)
                      ++.|+|..+..   .....|++++.++..   ++.+|++.+++++++..    .+++++++++|||| |.+++.+++++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i  151 (338)
T cd06502          76 CHETAHIYTDEAGAPEFLSGVKLLPVPGE---NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAI  151 (338)
T ss_pred             EecCcceeeecCCcHHHHcCceEEeecCC---CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHH
Confidence            99999875432   344589999999872   36799999999987421    24678888999998 667799999999


Q ss_pred             HHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHH
Q 017967          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLK  334 (363)
Q Consensus       255 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~  334 (363)
                      +++|+++|+++|+||+|..+.......   ++... ....+ +++.|+||.||++|   |++  +..+++    ++++++
T Consensus       152 ~~~~~~~~~~livDea~~~~~~~~~~~---~~~~~-~~~~d-~~~~s~sK~~~~~~---g~~--~~~~~~----~~~~~~  217 (338)
T cd06502         152 SALAKENGLPLHLDGARLANAAAALGV---ALKTY-KSGVD-SVSFCLSKGGGAPV---GAV--VVGNRD----FIARAR  217 (338)
T ss_pred             HHHHHHcCCeEeechHHHHHHHHhcCC---CHHHH-HhcCC-EEEEeccccCCCcc---ceE--EECCHH----HHHHHH
Confidence            999999999999999985442111001   12222 12234 45779999999887   654  445577    444444


Q ss_pred             hhhcc--ccCCCchHHHHHHhccccc
Q 017967          335 RLARP--MYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       335 ~~~~~--~~~~~s~~~q~~~~~~l~~  358 (363)
                      .....  .....+.+.|.++...|+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~a~~~~L~~  243 (338)
T cd06502         218 RRRKQAGGGMRQSGFLAAAGLAALEN  243 (338)
T ss_pred             HHHHHhCCChhhHHHHHHHHHHHhcC
Confidence            33221  1224566777777776654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.85  E-value=9.2e-20  Score=176.18  Aligned_cols=242  Identities=15%  Similarity=0.173  Sum_probs=162.6

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHcc-C-CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      .+++||+.|.+.+..    ..+.+.++..+.... . ....|....|..++++++++++....+.   ++.+++  +.| 
T Consensus        33 ~~~id~~~~~~~g~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~--~sG-  102 (385)
T TIGR01825        33 KEVINLSSNNYLGFA----DHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVF--QSG-  102 (385)
T ss_pred             ceEEEeeccCccCCC----CCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEE--CcH-
Confidence            478999988653221    244555555554432 1 1245777889999999999998766553   345655  655 


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC-CCcEEEEEcCCC
Q 017967          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHGCAH  239 (363)
Q Consensus       161 t~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~~p~  239 (363)
                      ++++.++  +...+.+||.|+++.|+|..+...+...|++++.++       .+|++.+++.+++.. ++++++++++++
T Consensus       103 ~~a~~~a--~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v~  173 (385)
T TIGR01825       103 FNTNQGV--LSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGVF  173 (385)
T ss_pred             HHHHHHH--HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecCC
Confidence            5665555  344577999999999999999888888888876653       478889988887532 356788888899


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEe
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      ||||...+   +++|.++|+++|+++|+||+|..+.++....  .....+--..+.++++.||||.+|++|   ||+  +
T Consensus       174 ~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~--~  243 (385)
T TIGR01825       174 SMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGR--GTVHHFGLEDKVDIQVGTLSKAIGVVG---GYA--A  243 (385)
T ss_pred             cCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCC--ccHhhcCCCcCCcEEEEeccHHhhcCC---CEE--e
Confidence            99999877   5667888999999999999998765542101  111111112467899999999998665   998  5


Q ss_pred             eCChhHHHHHHHHHHhhhc-cccC-CCchHHHHHHhccccc
Q 017967          320 CSSSDLAARVKSQLKRLAR-PMYS-NPPPMLLGIQLSSMNG  358 (363)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~-~~~~-~~s~~~q~~~~~~l~~  358 (363)
                      ++ ++    +++.+..... .... ..++..|.++...|+.
T Consensus       244 ~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  279 (385)
T TIGR01825       244 GH-KE----LIEYLKNRARPFLFSTAQPPAVVAALAAAVDE  279 (385)
T ss_pred             cC-HH----HHHHHHHhCccccccCCCCHHHHHHHHHHHHH
Confidence            54 66    4454544322 2222 2345666666555543

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.85  E-value=8.9e-20  Score=176.82  Aligned_cols=218  Identities=12%  Similarity=0.036  Sum_probs=148.1

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCC---CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccc
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY---LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y---~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (363)
                      .++|||+.|.|.+..    ..+.+.++..+.+.... ..|   ....|..++++++++++...++.   +++|++  |.|
T Consensus        42 ~~~i~l~~~~~~~~~----~~~~i~~a~~~~~~~~~-~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~--tsG  111 (397)
T PRK06939         42 KEVINFCANNYLGLA----NHPELIAAAKAALDSHG-FGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILY--SSC  111 (397)
T ss_pred             CeEEEeeccCccccC----CCHHHHHHHHHHHHHcC-CCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEE--cCh
Confidence            478999998753322    24556666555553311 223   22468888888888777665553   356766  666


Q ss_pred             hhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc---CCCCcEEEEEc
Q 017967          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHG  236 (363)
Q Consensus       160 gt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~~~~~~i~  236 (363)
                       ++++..+  +..++.|||.|++++|+|+.+...++..|.+++.++.       .|++.+++.+++   ...++++++..
T Consensus       112 -~~a~~~~--~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~  181 (397)
T PRK06939        112 -FDANGGL--FETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATD  181 (397)
T ss_pred             -HHHHHHH--HHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEe
Confidence             6776666  4455789999999999999999999999998877754       478888888864   11246677767


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-CCeEEEEEcCccccccccccceE
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~l~G~RvG~  315 (363)
                      +.+||||..   +++++|.++|+++++++|+||+|.....+.. . ..... .... ...+++++||||.++  |+|+||
T Consensus       182 ~v~~~~G~~---~~~~~l~~la~~~~~~li~De~~~~g~~~~~-~-~~~~~-~~~~~~~~~i~~~S~sK~~~--g~r~G~  253 (397)
T PRK06939        182 GVFSMDGDI---APLPEICDLADKYDALVMVDDSHAVGFVGEN-G-RGTVE-HFGVMDRVDIITGTLGKALG--GASGGY  253 (397)
T ss_pred             cCcCCCCCc---CCHHHHHHHHHHhCCEEEEECcccccCcCCC-C-CCHHH-HcCCCCCCcEEEEECHHHhC--ccCceE
Confidence            789999974   4678888999999999999999952211110 0 11111 1121 234699999999995  669999


Q ss_pred             EEEeeCChhHHHHHHHHHHh
Q 017967          316 MNVVCSSSDLAARVKSQLKR  335 (363)
Q Consensus       316 i~~v~~~~~~~~~~~~~l~~  335 (363)
                      +  +++ ++    +++.+..
T Consensus       254 v--~~~-~~----~~~~l~~  266 (397)
T PRK06939        254 T--AGR-KE----VIDWLRQ  266 (397)
T ss_pred             E--EeC-HH----HHHHHHH
Confidence            9  766 66    4455544

>PRK10534 L-threonine aldolase; Provisional

Probab=99.85  E-value=2e-20  Score=177.45  Aligned_cols=233  Identities=15%  Similarity=0.076  Sum_probs=150.4

Q ss_pred             EEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHH
Q 017967           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (363)
Q Consensus        86 i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (363)
                      |+|+..+      .|.+++.+.+++.+... .. ..|+|..+..+|++++++++..        +.+++  +.||+++..
T Consensus         2 ~~~~~~~------~~~p~~~~~~a~~~~~~-~~-~~Y~~~~~~~~L~~~la~~~g~--------~~~~v--~~~g~~a~~   63 (333)
T PRK10534          2 IDLRSDT------VTRPSRAMLEAMMAAPV-GD-DVYGDDPTVNALQDYAAELSGK--------EAALF--LPTGTQANL   63 (333)
T ss_pred             ccccccc------CCCCCHHHHHHHHhccC-CC-cccCCCHHHHHHHHHHHHHhCC--------CeEEE--eCchHHHHH
Confidence            5666443      24467888888766432 23 5688888999999999999532        23345  788888866


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcc-hHHH-HhhCC-CCeEEEecccCCCCCCCHHHHHHHHHcCC---CCcEEEEEcCCC
Q 017967          166 LAAALIERYFPGAKVLISSPTWGN-HKNI-FNDAR-VPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLHGCAH  239 (363)
Q Consensus       166 l~~~l~~~~~~gd~Vlv~~P~y~~-~~~~-~~~~G-~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~i~~p~  239 (363)
                      +.  ++..+.+||+|+++.|+|.. |... ....| ++++.++.+  .++.+|++++++++.+++   .+++++++|||+
T Consensus        64 ~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~  139 (333)
T PRK10534         64 VA--LLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH  139 (333)
T ss_pred             HH--HHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC
Confidence            66  44557799999999888753 3221 23333 677777763  468899999999886311   135677778755


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceE-EEE
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA-MNV  318 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~-i~~  318 (363)
                        ||.+++.+++++|+++|+++++++++||+|..........   ....+....+.++  .||||.||++   +|| +  
T Consensus       140 --~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~---~~~~~~~~~~~~~--~s~SK~~~~~---~G~~~--  207 (333)
T PRK10534        140 --NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGC---ELKEITQYCDSFT--ICLSKGLGTP---VGSLL--  207 (333)
T ss_pred             --CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCC---CHHHHHhcCCEEE--EEeEcCCCCc---ccceE--
Confidence              6999999999999999999999999999976221100001   1122222223333  4899988754   784 6  


Q ss_pred             eeCChhHHHHHHHHHHhhhccccCC--CchHHHHHHhcccc
Q 017967          319 VCSSSDLAARVKSQLKRLARPMYSN--PPPMLLGIQLSSMN  357 (363)
Q Consensus       319 v~~~~~~~~~~~~~l~~~~~~~~~~--~s~~~q~~~~~~l~  357 (363)
                      ++ +++    +++.+++....+..+  .+.+.|.+....|+
T Consensus       208 ~~-~~~----~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~  243 (333)
T PRK10534        208 VG-NRD----YIKRARRWRKMTGGGMRQAGILAAAGLYALK  243 (333)
T ss_pred             Ec-CHH----HHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            44 577    455555554433222  23455665554443

>PLN02721 threonine aldolase

Probab=99.85  E-value=9.1e-20  Score=174.00  Aligned_cols=210  Identities=15%  Similarity=0.087  Sum_probs=139.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+++|+.+.+      +.+.+.+.+++...........|  .....+|++++++++..        +.+++  +.+|+++
T Consensus         6 ~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~--------~~~~~--~~~Gs~a   67 (353)
T PLN02721          6 RVVDLRSDTV------TKPTDAMRAAMANAEVDDDVLGY--DPTALRLEEEMAKIFGK--------EAALF--VPSGTMG   67 (353)
T ss_pred             hhhhhhcccc------cCCCHHHHHHHHhccCCCcccCC--CHHHHHHHHHHHHHhCC--------ceeEE--ecCccHH
Confidence            5788887775      23567777777653111122333  33378999999999743        23444  5666766


Q ss_pred             HHHHHHHHHHhC-CCCEEEEcCCCCcchHH---HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC----CCCcEEEEE
Q 017967          164 LRLAAALIERYF-PGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFILLH  235 (363)
Q Consensus       164 l~l~~~l~~~~~-~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~~~~i  235 (363)
                      ..++  +...+. +||.|++++|+|.....   .+...|++++.++.+  +++.+|++.+++.+++.    .++++++++
T Consensus        68 ~~~~--l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l  143 (353)
T PLN02721         68 NLIS--VLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTTRLICL  143 (353)
T ss_pred             HHHH--HHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcceEEEE
Confidence            5444  344466 99999999999854433   567889999999873  45679999999999742    023556666


Q ss_pred             cC-CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccce
Q 017967          236 GC-AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (363)
Q Consensus       236 ~~-p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG  314 (363)
                      ++ +|||||.+++.+++++|+++|+++|+++|+|++|........  + .....+....+  +++.|+||.++.   ++|
T Consensus       144 ~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~--~-~~~~~~~~~~d--~~~~s~sK~l~~---~~G  215 (353)
T PLN02721        144 ENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVAL--G-VPVHRLVKAAD--SVSVCLSKGLGA---PVG  215 (353)
T ss_pred             eccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhh--C-CCHHHHhhhCC--EEEEecccccCC---cee
Confidence            55 689999999999999999999999999999999752211000  0 11112222223  335579998863   478


Q ss_pred             EEEEeeCChhH
Q 017967          315 AMNVVCSSSDL  325 (363)
Q Consensus       315 ~i~~v~~~~~~  325 (363)
                      |+  +..+++.
T Consensus       216 ~~--~~~~~~~  224 (353)
T PLN02721        216 SV--IVGSKSF  224 (353)
T ss_pred             eE--EecCHHH
Confidence            75  3455773

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.84  E-value=3e-19  Score=172.00  Aligned_cols=192  Identities=15%  Similarity=0.096  Sum_probs=141.3

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~  199 (363)
                      +.....+|++++|++..        .+++++  ++||++|+.++  +..++.+||+|+++.|+|......+.    ..|+
T Consensus        49 ~~p~~~~le~~lA~l~g--------~~~v~~--~~gg~~Ai~~~--l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~  116 (382)
T TIGR02080        49 GNPTRDLLQQALAELEG--------GAGAVV--TNTGMSAIHLV--TTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCF  116 (382)
T ss_pred             CCchHHHHHHHHHHHhC--------CCcEEE--EcCHHHHHHHH--HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCe
Confidence            55567899999999853        256767  99999999988  45557899999999999987655443    2344


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      ++..++       ..|++.+++++++   +++++++++|+||||.+++.   ++|.++|+++|+++|+|++|..+.... 
T Consensus       117 ~v~~~d-------~~d~~~l~~ai~~---~tklV~l~~p~NPtG~~~dl---~~I~~la~~~g~~vvvD~a~~~~~~~~-  182 (382)
T TIGR02080       117 RVLFVD-------QGDEQALRAALAQ---KPKLVLIETPSNPLLRVVDI---AKICHLAKAVGAVVVVDNTFLSPALQN-  182 (382)
T ss_pred             EEEEEC-------CCCHHHHHHhcCc---CceEEEEECCCCCCCEecCH---HHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            444432       2378999998863   46788889999999999875   456777999999999999997664321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                           +.    ..+ ..++++|+||.++ .+|+|.|++  ++.+++    +++.+.........+.+++.+.++.+.|+
T Consensus       183 -----pl----~~g-aDivv~S~sK~l~G~~~~~~G~i--~~~~~~----~~~~l~~~~~~~g~~~sp~~a~l~lr~l~  245 (382)
T TIGR02080       183 -----PL----ALG-ADLVLHSCTKYLNGHSDVIAGAV--IAKDPQ----VAEELAWWANNLGVTGGAFDSYLTLRGLR  245 (382)
T ss_pred             -----ch----hhC-CCEEEeecceeccCCCCceeEEE--EeCCHH----HHHHHHHHHHccCCCCCHHHHHHHHcccc
Confidence                 11    111 2378899999885 578899998  776677    44555544455566788888888776654

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.83  E-value=1.8e-19  Score=174.86  Aligned_cols=244  Identities=13%  Similarity=0.043  Sum_probs=161.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+||+..|.....-++  -.+.+.+++.+.+....   +....+..++++++++++....+    .+++++  ++||++|
T Consensus        40 ~~iD~~~g~~~~~lG~--~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~~v~~--~~gg~eA  108 (396)
T PRK02627         40 EYLDFLAGIAVNNLGH--CHPKLVEAIQEQAAKLI---HTSNLYYIEPQEELAEKLVELSG----MDKVFF--CNSGAEA  108 (396)
T ss_pred             EEEECCccHHhccCCC--CCHHHHHHHHHHHhhcc---ccccccCCHHHHHHHHHHHhhcC----CCEEEE--CCCcHHH
Confidence            7899988765333333  23566666665553211   11112235677788877765533    378988  9999999


Q ss_pred             HHHHHHHHHHhC-C----CCEEEEcCCCCcchHHHHhhCCCCe-EE---EecccCCCC----CCCHHHHHHHHHcCCCCc
Q 017967          164 LRLAAALIERYF-P----GAKVLISSPTWGNHKNIFNDARVPW-SE---YRYYDPKTV----GLDFEGMIADIKAAPGGS  230 (363)
Q Consensus       164 l~l~~~l~~~~~-~----gd~Vlv~~P~y~~~~~~~~~~G~~~-~~---v~~~~~~~~----~~d~~~l~~~l~~~~~~~  230 (363)
                      ++++..+..... +    .++|++..++|.++.......+... ..   .++.  .++    ..|++.+++.+.   +++
T Consensus       109 ~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~i~---~~~  183 (396)
T PRK02627        109 NEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLV--EGFIYVPFNDIEALKAAIT---DKT  183 (396)
T ss_pred             HHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCC--CCceEeCCCCHHHHHHhcC---CCe
Confidence            999966543332 1    1789999999988765544333221 11   1111  111    228899999885   346


Q ss_pred             EEEEEcCCCCCCC-CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          231 FILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       231 ~~~~i~~p~NPTG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      .++++.+++||+| ..++.+.+++|.++|+++|+++|+||+|.+|...+.   ..+...+ ...++   +.+|||.++ +
T Consensus       184 ~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~---~~~~~~~-~~~pd---i~t~sK~~~-~  255 (396)
T PRK02627        184 AAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK---LFAYQHY-GIEPD---IMTLAKGLG-G  255 (396)
T ss_pred             EEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc---eeeehhc-CCCCC---EEEEcchhh-C
Confidence            6777788899999 788999999999999999999999999999865431   1121111 22233   347999999 9


Q ss_pred             cccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       310 G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |+|+||+  +++ ++    +++.+........++.++++|.++...|+.
T Consensus       256 G~rig~~--~~~-~~----~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~  297 (396)
T PRK02627        256 GVPIGAV--LAK-EK----VADVFTPGDHGSTFGGNPLACAAALAVIEI  297 (396)
T ss_pred             CcccEEE--EEc-HH----HHhccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            9999999  776 55    555555433445567899999998877763

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=3.5e-19  Score=171.73  Aligned_cols=193  Identities=17%  Similarity=0.142  Sum_probs=142.2

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~  199 (363)
                      +......|++++|++...        +.+++  +.||++++.++  +..++.|||+|++++|+|+.....+.    ..|+
T Consensus        50 ~~pt~~~L~~~lA~l~g~--------~~~i~--~~sg~~Ai~~~--l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi  117 (386)
T PRK08045         50 GNPTRDVVQRALAELEGG--------AGAVL--TNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_pred             CCccHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe
Confidence            556678999999999532        35666  99999999888  45567899999999999986444333    3344


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      ++..++       ..|++.+++++++   +++++++++|+||||.+++.   ++|.++|+++|+++|+|++|....... 
T Consensus       118 ~v~~vd-------~~d~e~l~~~l~~---~tklV~l~sP~NPtG~v~di---~~I~~ia~~~g~~vivDeay~~~~~~~-  183 (386)
T PRK08045        118 RVLFVD-------QGDEQALRAALAE---KPKLVLVESPSNPLLRVVDI---AKICHLAREAGAVSVVDNTFLSPALQN-  183 (386)
T ss_pred             EEEEeC-------CCCHHHHHHhccc---CCeEEEEECCCCCCCEecCH---HHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            555542       2588999988863   46688889999999999975   566666899999999999998764321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                           +.    +.+.+ ++++|++|.++ ..+.+.|++  ++.+++    +.+.+.........+.+++.+.++.+.|+.
T Consensus       184 -----pl----~~gaD-ivv~S~tK~l~G~~d~~~G~v--i~~~~~----~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t  247 (386)
T PRK08045        184 -----PL----ALGAD-LVLHSCTKYLNGHSDVVAGVV--IAKDPD----VVTELAWWANNIGVTGGAFDSYLLLRGLRT  247 (386)
T ss_pred             -----ch----hhCCC-EEEeecceeccCCCCceeEEE--EeCcHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhhcc
Confidence                 11    12223 88999999985 566789998  776676    445555455556668899999988887753

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.83  E-value=4e-19  Score=171.78  Aligned_cols=190  Identities=16%  Similarity=0.175  Sum_probs=138.2

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~  200 (363)
                      ..-..+|++.+|+++..        +++++  +.||++|+.++  +..++.+||+|+++.+.|.+...    .++..|++
T Consensus        60 ~p~~~~le~~la~l~g~--------~~~v~--~ssG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~  127 (390)
T PRK08133         60 NPTVTMFQERLAALEGA--------EACVA--TASGMAAILAV--VMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIE  127 (390)
T ss_pred             ChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcE
Confidence            34467899999998532        35656  89999998877  45567899999999998876544    45678999


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      ++.++.+       |++.++++++   ++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|.......  
T Consensus       128 v~~vd~~-------d~~~l~~~i~---~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~--  192 (390)
T PRK08133        128 TTFVDLT-------DLDAWRAAVR---PNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ--  192 (390)
T ss_pred             EEEECCC-------CHHHHHHhcC---cCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence            9988762       6888998886   35678888999999999985   5677888999999999999986554321  


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccc
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                          +.    ..+ ..+++.|+||.++.+|.|+|++  +..+++.++++..    ..+......+.+.+.++.+.|
T Consensus       193 ----pl----~~g-~Divv~S~sK~~~g~g~~~GG~--vv~~~~~~~~~~~----~~~~~g~~~~~~~a~~~l~gl  253 (390)
T PRK08133        193 ----PL----KLG-ADVVIHSATKYLDGQGRVLGGA--VVGSKELMEEVFG----FLRTAGPTLSPFNAWVFLKGL  253 (390)
T ss_pred             ----ch----hhC-CcEEEeecceeecCCcceEeEE--EEcCHHHHHHHHH----HHHHhCCCCCHHHHHHHHccc
Confidence                11    112 2477999999999899999655  3444664444433    333344467777777765554

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.83  E-value=4.3e-19  Score=171.18  Aligned_cols=243  Identities=14%  Similarity=0.110  Sum_probs=158.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      ..|||..|...+.-++  ..+.+.+++.+.+....  ...| +..-..+|.+++++++    +    .+++++  ++||+
T Consensus        28 ~~id~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~~~~--~~sg~   94 (379)
T TIGR00707        28 EYLDFVAGIAVNSLGH--AHPKLVEALKEQLEKLVHVSNLY-YTEPQEELAEKLVEHS----G----ADRVFF--CNSGA   94 (379)
T ss_pred             EEEEcCcchhhccCCC--CCHHHHHHHHHHHhhcccccccc-CCHHHHHHHHHHHhhC----C----CCEEEE--eCCcH
Confidence            6899988743222332  34566666655543211  1223 3344556666666663    2    248877  99999


Q ss_pred             HHHHHHHHHHHHhC-----CCCEEEEcCCCCcchHHHHhhCCCCeEE----EecccCCCCC--CCHHHHHHHHHcCCCCc
Q 017967          162 GSLRLAAALIERYF-----PGAKVLISSPTWGNHKNIFNDARVPWSE----YRYYDPKTVG--LDFEGMIADIKAAPGGS  230 (363)
Q Consensus       162 ~al~l~~~l~~~~~-----~gd~Vlv~~P~y~~~~~~~~~~G~~~~~----v~~~~~~~~~--~d~~~l~~~l~~~~~~~  230 (363)
                      +++.++..++..+.     +||+|++++|+|..+...+...+.....    .++..+..+.  .|++.+++.+.+   ++
T Consensus        95 ~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~  171 (379)
T TIGR00707        95 EANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDD---ET  171 (379)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhh---Ce
Confidence            99998865543322     3799999999998887666655443221    2221111111  189999998863   35


Q ss_pred             EEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          231 FILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       231 ~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      .+++++.++||+|.. ++.+++++|.++|+++++++|+||+|.+|.+.+   ...+... ....++++   +|||.++ +
T Consensus       172 ~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g---~~~~~~~-~~~~~d~~---t~sK~~~-~  243 (379)
T TIGR00707       172 AAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG---KFFAYEH-YGIEPDII---TLAKGLG-G  243 (379)
T ss_pred             eEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---hhhhHHh-cCCCCCEE---EEccccc-C
Confidence            566666566777764 799999999999999999999999999886542   1112111 12233433   6899999 9


Q ss_pred             cccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       310 G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |+|+||+  +++ ++    +++.+.........+.+.++|.++...|+
T Consensus       244 G~riG~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~aa~aaL~  284 (379)
T TIGR00707       244 GVPIGAT--LAK-EE----VAEAFTPGDHGSTFGGNPLACAAALAVLE  284 (379)
T ss_pred             CcccEEE--EEc-HH----HHhhhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence            9999999  665 65    56666654444455788999999886665

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.83  E-value=3.6e-19  Score=170.72  Aligned_cols=172  Identities=15%  Similarity=0.028  Sum_probs=131.2

Q ss_pred             chHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEec
Q 017967          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY  206 (363)
Q Consensus       127 G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~  206 (363)
                      -..++++.+|+++..        +++++  |+|+++++.++  +...+.+||+|+++.++|......++..|++++.++.
T Consensus        45 ~~~~l~~~la~~~g~--------~~i~~--~~g~t~al~~~--l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~  112 (361)
T cd06452          45 PIKDFHHDLAEFLGM--------DEARV--TPGAREGKFAV--MHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPN  112 (361)
T ss_pred             hHHHHHHHHHHHcCC--------ceEEE--eCCHHHHHHHH--HHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEec
Confidence            356889999998522        57877  99999998887  4445679999999999887776778899999999998


Q ss_pred             ccCCCCCCCHHHHHHHHHcCC----CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCc
Q 017967          207 YDPKTVGLDFEGMIADIKAAP----GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (363)
Q Consensus       207 ~~~~~~~~d~~~l~~~l~~~~----~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~  282 (363)
                      +.+.++.+|++.+++++++..    ++++++++++|+||||...   ++++|+++|+++|+++|+|++|......     
T Consensus       113 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~---~~~~i~~~~~~~~~~vivD~a~~~g~~~-----  184 (361)
T cd06452         113 TGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH---DAKKIAKVCHEYGVPLLLNGAYTVGRMP-----  184 (361)
T ss_pred             CCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec---cHHHHHHHHHHcCCeEEEECCcccCCcC-----
Confidence            543346899999999886421    2467888899999999764   5677888899999999999998742211     


Q ss_pred             hhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHH
Q 017967          283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA  327 (363)
Q Consensus       283 ~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~  327 (363)
                       ....    ..+..++++|++|.++ ++.|+||+  +++ ++.++
T Consensus       185 -~~~~----~~~~d~~~~s~~K~l~-~~~~~G~l--~~~-~~~~~  220 (361)
T cd06452         185 -VSGK----ELGADFIVGSGHKSMA-ASAPIGVL--ATT-EEWAD  220 (361)
T ss_pred             -CCHH----HcCCCEEEecCCcccc-CCCCeEEE--EEC-HHHHH
Confidence             1111    1134689999999998 56699999  665 55333

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.83  E-value=4.5e-19  Score=168.57  Aligned_cols=193  Identities=14%  Similarity=0.114  Sum_probs=139.2

Q ss_pred             cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEc---CCCCcchHHHHhhCCCCeE
Q 017967          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLIS---SPTWGNHKNIFNDARVPWS  202 (363)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~---~P~y~~~~~~~~~~G~~~~  202 (363)
                      .-..+|++++|+++..      +++++++  ++||++++..+  +..++.|||.|+++   .|+|..+...++..|++++
T Consensus        54 ~~~~~Le~~lA~~~g~------~~e~ilv--~~gg~~a~~~~--~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~~~  123 (346)
T TIGR03576        54 IFEEKVQELGREHLGG------PEEKILV--FNRTSSAILAT--ILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAEYF  123 (346)
T ss_pred             HHHHHHHHHHHHHcCC------CcceEEE--ECCHHHHHHHH--HHHhCCCCCEEEECCCCCCCchhHHHHHHHcCCEEe
Confidence            3456777777777532      3688988  99999998887  55667899999975   4788888888888898753


Q ss_pred             EEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCc
Q 017967          203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (363)
Q Consensus       203 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~  282 (363)
                      .+         .+++.++.    .+ +++++++ +++||+|.+++.+++++|+++|+++|+++|+||+|..+..+...  
T Consensus       124 ~~---------~~l~~l~~----~~-~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~--  186 (346)
T TIGR03576       124 ES---------DELSELKK----ID-GTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYG--  186 (346)
T ss_pred             cc---------CCHHHHhh----Cc-CceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCC--
Confidence            22         13444322    12 3445554 56799999999999999999999999999999999987543111  


Q ss_pred             hhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       283 ~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ..+..   ..+.+ +++.||||  +++|+|+||+  +++ ++    +++.+.+..+...++++++.|.++...|+.
T Consensus       187 ~~~~~---~~~~d-ivv~s~SK--alaG~r~G~v--~~~-~~----li~~l~~~~~~~~~s~~~~~~~aa~~aL~~  249 (346)
T TIGR03576       187 QPPAL---DLGAD-LVVTSTDK--LMDGPRGGLL--AGR-KE----LVDKIKSVGEQFGLEAQAPLLAAVVRALEE  249 (346)
T ss_pred             CCCHH---HcCCc-EEEeccch--hccccceEEE--EeC-HH----HHHHHHHhhcCcccCccHHHHHHHHHHHhh
Confidence            11111   22233 66779999  5789999999  665 66    667777776665556788899888877754

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.83  E-value=4.2e-19  Score=172.42  Aligned_cols=205  Identities=15%  Similarity=0.071  Sum_probs=145.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-CCCCCCCCC-------cchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPI-------EGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~-------~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+.|..+.      ..++++.+.++..+.... ..+..+...       ....++|+++++++...     ++++|++ 
T Consensus        16 ~~iyld~a~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-----~~~~i~~-   83 (398)
T TIGR03392        16 GTVYLDSAA------TALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAP-----DAENIVW-   83 (398)
T ss_pred             CeEEeeCcc------ccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-----CCCeEEE-
Confidence            456666544      345677888887766532 111222222       23457999999997542     2578988 


Q ss_pred             eccchhHHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~--~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                       |.|+|++++++...+.  .+.+||+|++++|.|+.    +...++..|++++.++++  .++.+|++.+++.+++   +
T Consensus        84 -t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~~~~~l~~~i~~---~  157 (398)
T TIGR03392        84 -TRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIG--ADLLPDIRQLPELLTP---R  157 (398)
T ss_pred             -eCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecC--CCCCcCHHHHHHHhcc---C
Confidence             9999999999854332  14689999999999865    455678899999999984  3467899999999863   4


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      +++++++++|||||.+++.   ++|+++|+++|+++|+|++|...... .     .+.    ..+..+++.|++|.+|.+
T Consensus       158 t~lv~i~~~~n~tG~~~~~---~~i~~~~~~~~~~~ivD~a~~~~~~~-~-----~~~----~~~~d~~~~s~~K~~gp~  224 (398)
T TIGR03392       158 TRILALGQMSNVTGGCPDL---ARAITLAHQYGAVVVVDGAQGVVHGP-P-----DVQ----ALDIDFYAFSGHKLYGPT  224 (398)
T ss_pred             ceEEEEECccccccccCCH---HHHHHHHHHcCCEEEEEhhhhcCCCC-C-----Chh----hcCCCEEEEecccccCCC
Confidence            6788889999999999875   55777799999999999998644321 1     111    112346788889998866


Q ss_pred             cccceEEEEeeCChh
Q 017967          310 AERIGAMNVVCSSSD  324 (363)
Q Consensus       310 G~RvG~i~~v~~~~~  324 (363)
                      |  +||+  +.+ ++
T Consensus       225 G--~G~l--~~~-~~  234 (398)
T TIGR03392       225 G--IGVL--YGK-TE  234 (398)
T ss_pred             c--eEEE--EEc-HH
Confidence            6  8999  665 55

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=4.6e-19  Score=171.56  Aligned_cols=194  Identities=20%  Similarity=0.197  Sum_probs=141.7

Q ss_pred             CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCC
Q 017967          123 LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDAR  198 (363)
Q Consensus       123 ~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G  198 (363)
                      .+.....+|++.+|++...        +..++  +.+|++|+.++  +..++.+||+|+++.|+|.....    .+...|
T Consensus        61 ~~~p~~~~le~~lA~l~g~--------~~~i~--~ssG~~Ai~~~--l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~G  128 (398)
T PRK08249         61 NTNPTVQAFEEKVRILEGA--------EAATA--FSTGMAAISNT--LYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMG  128 (398)
T ss_pred             CCChHHHHHHHHHHHHhCC--------CeEEE--eCChHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCC
Confidence            3456678999999999643        34444  68889998877  45567899999999999987644    345678


Q ss_pred             CCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCC
Q 017967          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (363)
Q Consensus       199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~  278 (363)
                      ++++.++.       .|++.+++++++   +++++++++|+||||.+++   +++|.++|+++|+++|+|++|..+....
T Consensus       129 i~v~~vd~-------~d~e~l~~~i~~---~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~  195 (398)
T PRK08249        129 VDVTLCET-------GDHEQIEAEIAK---GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN  195 (398)
T ss_pred             eEEEEcCC-------CCHHHHHHhcCC---CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC
Confidence            88776642       589999998873   4678888999999999997   4557777999999999999998654321


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                            +.    ..+ ..++++|+||.++..|.++|++  ++.+++    ++++++..........+.+.+.++.+.|+.
T Consensus       196 ------~l----~~~-~Divv~S~sK~l~g~~~~~gG~--vv~~~~----l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t  258 (398)
T PRK08249        196 ------PL----ALG-ADLVIHSATKFLSGHADALGGV--VCGSKE----LMEQVYHYREINGATMDPMSAYLILRGMKT  258 (398)
T ss_pred             ------ch----hhC-CCEEeccCceecCCCCCceEEE--EECCHH----HHHHHHHHHHhcCCCCCHHHHHHHHhCcch
Confidence                  11    111 2267899999998778888555  344576    444444444455668888888887766543

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.83  E-value=3.3e-19  Score=164.32  Aligned_cols=220  Identities=21%  Similarity=0.182  Sum_probs=145.7

Q ss_pred             CCCC-CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh---C-CC----------CEEEEc
Q 017967          119 NKEY-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---F-PG----------AKVLIS  183 (363)
Q Consensus       119 ~~~Y-~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~---~-~g----------d~Vlv~  183 (363)
                      ..+| +...|++++|+-+|+.+.-.      +++|    ..||+++++++..++...   . +|          -+.|+|
T Consensus        61 ~RNY~G~l~Gipe~r~l~a~llgv~------~~~v----iv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP  130 (425)
T PF12897_consen   61 CRNYPGGLDGIPEARELFAELLGVP------PENV----IVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP  130 (425)
T ss_dssp             TTSS-S-SS--HHHHHHHHHHHTS-------GGGE----EE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE
T ss_pred             ccCCCCccCChHHHHHHHHHHhCCC------HHHE----EEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec
Confidence            3679 88999999999999997443      6888    468888888876544331   1 22          268999


Q ss_pred             CCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHH-HHhcC
Q 017967          184 SPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV-IQEKN  262 (363)
Q Consensus       184 ~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~-~~~~~  262 (363)
                      .|+|..+..+++.+|++.+.||+.+   .|+|.|.+++.+.+.+..+.+++++-.+||||.++|.+..++++.+ ....+
T Consensus       131 vPGYDRHFai~E~~Giemi~VpM~~---dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~D  207 (425)
T PF12897_consen  131 VPGYDRHFAITEHFGIEMIPVPMTE---DGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPD  207 (425)
T ss_dssp             ES--HHHHHHHHHCT-EEEEEEEET---TEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT
T ss_pred             CCCchHHHHHHHhhCcEEEecCCCC---CCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcC
Confidence            9999999999999999999999964   4999999999998777777789999999999999999999999987 34579


Q ss_pred             CeEEEecCCCCCcC-CCCCCch-hHHHHH---HhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhh
Q 017967          263 HIPFFDVAYQGFAS-GSLDNDA-SSVRLF---ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA  337 (363)
Q Consensus       263 ~~ii~De~y~~~~~-~~~~~~~-~~~~~~---~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~  337 (363)
                      ..|+.|++|.--.. ++.+... ..+...   ....++++.+.|.||+- +||.+|+++   +.+++.++.+.+++..  
T Consensus       208 FRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~---aaS~~Nl~~~~~~~~~--  281 (425)
T PF12897_consen  208 FRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFF---AASEANLAWIKKHLSV--  281 (425)
T ss_dssp             -EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEE---EE-HHHHHHHHHHHHH--
T ss_pred             eEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeee---ecCHHHHHHHHHHhcC--
Confidence            99999999975544 2111111 123222   34668999999999988 599999999   4557777777776653  


Q ss_pred             ccccCCCchHHHHHHhcccccc
Q 017967          338 RPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       338 ~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                        ...++.-+.|..-.+++.+.
T Consensus       282 --~tIgpdKvNQLRHvrff~d~  301 (425)
T PF12897_consen  282 --QTIGPDKVNQLRHVRFFKDA  301 (425)
T ss_dssp             --H-S---HHHHHHHHHHHHSH
T ss_pred             --ceeCccHHHHHHHHHHhcCh
Confidence              34588888888777766553

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.82  E-value=8.1e-19  Score=170.60  Aligned_cols=205  Identities=18%  Similarity=0.089  Sum_probs=145.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCCCC-------CcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLP-------IEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~-------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+.|..+.      ..++++.+.++..+...... +.....       .....++|+.+|+++...     ++++|++ 
T Consensus        19 ~~~yld~a~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-----~~~~i~~-   86 (401)
T PRK10874         19 AGVYLDSAA------TALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAP-----DAKNIVW-   86 (401)
T ss_pred             ceEEEeCCc------ccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCC-----CCCEEEE-
Confidence            456666544      34566778888777663211 000101       122567889999987442     3688988 


Q ss_pred             eccchhHHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~--~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                       |.|+|++++++...+.  .+.+||+|++++|.|+.    +...++..|++++.++.+  .++.+|++.+++.++   ++
T Consensus        87 -~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~---~~  160 (401)
T PRK10874         87 -TRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLG--ADRLPDVDLLPELIT---PR  160 (401)
T ss_pred             -ECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecC--CCCcCCHHHHHHhcC---cC
Confidence             9999999999854432  24699999999999854    556667899999999984  356789999999986   35


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ++++++++||||||..++.   ++|.++|+++|+++|+|++|...... .     .+.    .....+++.|++|.+|.+
T Consensus       161 t~lv~i~~~~n~tG~~~~~---~~i~~l~~~~g~~~ivD~a~~~g~~~-~-----~~~----~~~~d~~~~s~~K~~gp~  227 (401)
T PRK10874        161 TRILALGQMSNVTGGCPDL---ARAITLAHQAGMVVMVDGAQGAVHFP-A-----DVQ----ALDIDFYAFSGHKLYGPT  227 (401)
T ss_pred             cEEEEEeCCcccccCcCCH---HHHHHHHHHcCCEEEEECCccccccc-C-----Cch----hcCCCEEEEecccccCCC
Confidence            6788889999999999875   46677799999999999998543221 1     111    112457789999999877


Q ss_pred             cccceEEEEeeCChh
Q 017967          310 AERIGAMNVVCSSSD  324 (363)
Q Consensus       310 G~RvG~i~~v~~~~~  324 (363)
                      |  +||+  +.. ++
T Consensus       228 G--~G~l--~~~-~~  237 (401)
T PRK10874        228 G--IGVL--YGK-SE  237 (401)
T ss_pred             c--cEEE--EEc-hH
Confidence            7  5998  554 55

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.82  E-value=2.2e-18  Score=166.27  Aligned_cols=238  Identities=14%  Similarity=0.102  Sum_probs=151.1

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHcc-CC-CCCCCCC----cchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-NKEYLPI----EGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-~~~Y~~~----~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      ..+|||+.|.+.   +. ..++.+.+++.+.... .. ...|...    .-..++++++++++.       .++.+++  
T Consensus        39 ~~~id~~~~~~~---g~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-------~~~~i~~--  105 (385)
T PRK05958         39 RRMLNFASNDYL---GL-ARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG-------AERALLF--  105 (385)
T ss_pred             ceEEEeeCCCcc---cC-CCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-------CCcEEEE--
Confidence            489999988642   21 1345566666555422 10 1112222    234667777777753       1344444  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEc
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~  236 (363)
                       .+|++++..+  +...+.+||.|+++.|+|+.+...++..|++++.++.       .|++.+++.++..++++.++++.
T Consensus       106 -~~g~~~~~~~--l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~~  175 (385)
T PRK05958        106 -SSGYAANLAV--LTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVTE  175 (385)
T ss_pred             -CcHHHHHHHH--HHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEEE
Confidence             5566665544  3344679999999999999999999889999888864       37899999887532346677777


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      +++||||...+   +++|.++|+++|+++|+||+|....++......... .-.+..++++++.||||.||.+|   ||+
T Consensus       176 ~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G---g~~  248 (385)
T PRK05958        176 SVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAE-AGLAGEPDVILVGTLGKALGSSG---AAV  248 (385)
T ss_pred             ecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHh-hCCCCCCceEEEEechhhcccCC---cEE
Confidence            89999998755   667778899999999999999765443110111111 11234568899999999998776   888


Q ss_pred             EEeeCChhHHHHHHHHHHhhhcc-cc-CCCchHHHHHHhcccc
Q 017967          317 NVVCSSSDLAARVKSQLKRLARP-MY-SNPPPMLLGIQLSSMN  357 (363)
Q Consensus       317 ~~v~~~~~~~~~~~~~l~~~~~~-~~-~~~s~~~q~~~~~~l~  357 (363)
                        +++ ++    +.+.+...... .. .+.+...+.++...|+
T Consensus       249 --~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~  284 (385)
T PRK05958        249 --LGS-ET----LIDYLINRARPFIFTTALPPAQAAAARAALR  284 (385)
T ss_pred             --EcC-HH----HHHHHHHhCccceecCCCCHHHHHHHHHHHH
Confidence              655 66    44444433222 22 2344444444444444

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.82  E-value=9.6e-19  Score=169.61  Aligned_cols=192  Identities=16%  Similarity=0.168  Sum_probs=138.2

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcc----hHHHHhhCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN----HKNIFNDARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~  200 (363)
                      .....+|++.+|++...       ++.++   +.+|++++.++  +..++.+||+|+++.|+|..    +...++..|++
T Consensus        59 ~p~~~~Le~~lA~l~g~-------~~~v~---~~sG~~Ai~~~--l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~  126 (405)
T PRK08776         59 NPTRDLLGEALAELEGG-------AGGVI---TATGMGAINLV--LNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFA  126 (405)
T ss_pred             ChHHHHHHHHHHHHhCC-------CceEE---EcCHHHHHHHH--HHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcE
Confidence            34467889999988532       24443   57778998887  45557899999999999987    44445667888


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      ++.++.       .|++.+++.+++   +++++++++||||||.+.   ++++|+++|+++|+++|+|++|......   
T Consensus       127 v~~v~~-------~d~~~l~~~i~~---~tklV~l~~P~NPtG~v~---dl~~I~~la~~~gi~vIvD~a~a~~~~~---  190 (405)
T PRK08776        127 LITADL-------TDPRSLADALAQ---SPKLVLIETPSNPLLRIT---DLRFVIEAAHKVGALTVVDNTFLSPALQ---  190 (405)
T ss_pred             EEEECC-------CCHHHHHHhcCc---CCeEEEEECCCCCCCccC---CHHHHHHHHHHcCCEEEEECCCcccccC---
Confidence            888764       378899988863   467888899999999985   5777888899999999999999753221   


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCccccccc-cccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~-G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                         .+.    ..+ -.+++.|.+|.++.+ +...|++  ++.+++    +.+++.........+.+++.+.++...|+.
T Consensus       191 ---~pl----~~g-aDivv~S~tK~l~g~~~~~~G~v--v~~~~~----l~~~l~~~~~~~g~~~s~~~a~l~~~gl~t  255 (405)
T PRK08776        191 ---KPL----EFG-ADLVLHSTTKYINGHSDVVGGAV--VARDAE----LHQQLVWWANALGLTGSPFDAFLTLRGLRT  255 (405)
T ss_pred             ---Ccc----ccc-CCEEEecCceeecCCCCceEEEE--EeCCHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhhCc
Confidence               111    112 237889999999755 4778988  777777    444444333344456788888888765543

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.81  E-value=1.1e-18  Score=169.01  Aligned_cols=193  Identities=14%  Similarity=0.141  Sum_probs=137.7

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (363)
                      +.....+|++++|++....        ...+  +.+|+.++..+  ++..+.+||+|+++.|.|..+...+    ...|+
T Consensus        63 ~~p~~~~Le~~lA~l~G~~--------~~~~--~~sG~~Ai~~~--l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~  130 (398)
T PRK07504         63 SNPTVDMFEKRMCALEGAE--------DARA--TASGMAAVTAA--ILCQVKAGDHVVAARALFGSCRYVVETLLPRYGI  130 (398)
T ss_pred             CCchHHHHHHHHHHHhCCC--------eeeE--ecCHHHHHHHH--HHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCe
Confidence            4556789999999995332        2233  67888887655  4556789999999999999765543    46788


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++       .+|++.++++++   ++++++++++|+||||.+++   +++|.++|+++|+++|+|++|....+.. 
T Consensus       131 ~v~~vd-------~~d~e~l~~ai~---~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~~-  196 (398)
T PRK07504        131 ESTLVD-------GLDLDNWEKAVR---PNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQK-  196 (398)
T ss_pred             EEEEEC-------CCCHHHHHHhcC---cCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccCC-
Confidence            887774       368999999886   35778889999999999987   5566677999999999999998654421 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                           +.    +. ...+++.|+||.++.+|+|+|++  ++.+++.+.+   .++..........+.+.+.++...|+
T Consensus       197 -----~~----~~-gaDivv~S~sK~l~g~g~~~GG~--vv~~~~~i~~---~~~~~~~~~g~~~s~~~A~~~l~~L~  259 (398)
T PRK07504        197 -----PL----EL-GAHIVVYSATKHIDGQGRCLGGV--VLSDKAWIEE---HLQDYFRHTGPSLSPFNAWTLLKGLE  259 (398)
T ss_pred             -----ch----hh-CCCEEEeeccccccCCccceEEE--EEeCcHHHHH---HHHHHHHHhCCCCCHHHHHHHHhccc
Confidence                 11    11 24578999999999899999765  3344443322   23222233345677777777766554

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.81  E-value=1.7e-18  Score=167.34  Aligned_cols=193  Identities=17%  Similarity=0.146  Sum_probs=137.1

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (363)
                      +.....+|++++|++....       ..++   +.+|++|+.++  +..++.+||+|+++.|+|......+    ...|+
T Consensus        59 ~~p~~~~Le~~lA~~~g~~-------~~i~---~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi  126 (388)
T PRK07811         59 GNPTRTALEEQLAALEGGA-------YGRA---FSSGMAATDCL--LRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV  126 (388)
T ss_pred             CCccHHHHHHHHHHHhCCC-------ceEE---eCCHHHHHHHH--HHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe
Confidence            5577899999999996443       2333   47789998888  4555789999999999998654433    34677


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++.       .|++.+++.+++   +++++++++|+||||..   .++++|+++|+++|+++|+|++|....... 
T Consensus       127 ~~~~~d~-------~d~e~l~~~i~~---~tklV~ie~p~NPtg~~---~dl~~I~~la~~~gi~lIvD~a~a~~~~~~-  192 (388)
T PRK07811        127 EYTPVDL-------SDLDAVRAAITP---RTKLIWVETPTNPLLSI---TDIAALAELAHDAGAKVVVDNTFASPYLQQ-  192 (388)
T ss_pred             EEEEeCC-------CCHHHHHHhcCc---CCeEEEEECCCCCccee---cCHHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            7776653       488999998863   56788889999999976   457778888999999999999997654321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                           +.    .. ...+++.|+||.++.+| .+.||+  ++.+++    +.+.+...........+++.+.++...|+.
T Consensus       193 -----p~----~~-gaDivv~S~sK~l~g~~~~~gG~v--v~~~~~----l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t  256 (388)
T PRK07811        193 -----PL----AL-GADVVVHSTTKYIGGHSDVVGGAL--VTNDEE----LDEAFAFLQNGAGAVPGPFDAYLTLRGLKT  256 (388)
T ss_pred             -----ch----hh-CCcEEEecCceeecCCCCcEEEEE--EECCHH----HHHHHHHHHHhcCCCCCHHHHHHHHhccCc
Confidence                 11    11 22388999999998655 467998  776666    334344333333445666666666665543

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.81  E-value=2.8e-18  Score=164.68  Aligned_cols=191  Identities=14%  Similarity=0.152  Sum_probs=141.3

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHHhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~  199 (363)
                      +.....+|++++|++....        ..++  +.||++++.++   +..+.+||+|++++|.|+...    ..++..|+
T Consensus        50 ~~pt~~~le~~la~l~g~~--------~~~~--~~sG~~ai~~~---~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  116 (366)
T PRK08247         50 GNPTRGVLEQAIADLEGGD--------QGFA--CSSGMAAIQLV---MSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV  116 (366)
T ss_pred             CCchHHHHHHHHHHHhCCC--------cEEE--EcCHHHHHHHH---HHHhCCCCEEEEecCCcCcHHHHHHHHhhccCc
Confidence            4556789999999996432        2344  78899998766   345679999999999998753    34556899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++.       .|++.+++++++   +++++++++|+||+|   +..++++|+++|+++|+++|+|++|....... 
T Consensus       117 ~v~~vd~-------~d~~~l~~~i~~---~tklv~le~P~NP~~---~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~-  182 (366)
T PRK08247        117 RFVYVNT-------ASLKAIEQAITP---NTKAIFIETPTNPLM---QETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR-  182 (366)
T ss_pred             eEEEECC-------CCHHHHHHhccc---CceEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCccccccC-
Confidence            9888865       378999998863   467888899999975   57889999999999999999999995432221 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCcccccc-ccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l-~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                           +.    . ....++++|+||.++- .+.+.||+  ++++++    +.+.+.........+.+++.|.++...|+
T Consensus       183 -----p~----~-~g~di~i~S~sK~~~g~~d~~~G~i--v~~~~~----l~~~~~~~~~~~g~~~s~~~a~l~~~~l~  245 (366)
T PRK08247        183 -----PL----E-EGADIVIHSATKYLGGHNDVLAGLV--VAKGQE----LCERLAYYQNAAGAVLSPFDSWLLIRGMK  245 (366)
T ss_pred             -----ch----h-cCCcEEEeecceeccCCCceeeeEE--ecChHH----HHHHHHHHHHhcCCCCChHHHHHHHhccC
Confidence                 11    1 1356899999999973 24689998  776566    44444444444455677888888877665

>PLN02822 serine palmitoyltransferase

Probab=99.80  E-value=1.9e-18  Score=171.14  Aligned_cols=238  Identities=11%  Similarity=0.054  Sum_probs=157.4

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHcc-C-----CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      .+.+||+.|.|.+..++    +.+.++..+.++. +     ....|++..+..+|++++|+++..       ++.|++  
T Consensus       109 ~~~id~~s~~~lgl~~~----~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~-------~~~i~~--  175 (481)
T PLN02822        109 KDVVNFASANYLGLIGN----EKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT-------PDSILY--  175 (481)
T ss_pred             ceEEEeECCCcCCCCCC----HHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC-------CCEEEE--
Confidence            37899999987655444    4444444444422 1     112477778899999999999743       467776  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc---C----CCC
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---A----PGG  229 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~----~~~  229 (363)
                      +.|++ ++..+  +...+++||.|++....+..+...+...|.+++.++..       |.+.++..+.+   .    ++.
T Consensus       176 s~G~~-a~~sa--i~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~~~  245 (481)
T PLN02822        176 SYGLS-TIFSV--IPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHN-------DMESLRNTLEKLTAENKRKKKL  245 (481)
T ss_pred             CCHHH-HHHHH--HHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCC-------CHHHHHHHHHHHhhhhcccCCC
Confidence            76666 44443  44556799999988877777777777888888888763       33444444332   1    122


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh--cCCeEEEEEcCccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT--RGMELLVAQSYSKNLG  307 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~S~SK~~~  307 (363)
                      .+++++..++|+||.+.+   +++|+++|++||+++|+||+|....++..   .........  ..+..+++.||||.||
T Consensus       246 ~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~---G~G~~e~~~v~~~~~dii~~s~sKalg  319 (481)
T PLN02822        246 RRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKS---GRGLSEHFGVPIEKIDIITAAMGHALA  319 (481)
T ss_pred             cEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC---CCChHHHcCCCCCCCeEEEecchhhhh
Confidence            367888889999999998   57788889999999999999985555421   111111111  1245688999999999


Q ss_pred             cccccceEEEEeeCChhHHHHHHHHHHhhhccccCC--CchHHHHHHhcccccc
Q 017967          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSN--PPPMLLGIQLSSMNGK  359 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~--~s~~~q~~~~~~l~~~  359 (363)
                      ++|   ||+  +++ ++    +++.++.......++  .|++.|.++...|+..
T Consensus       320 ~~G---G~i--~g~-~~----ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l  363 (481)
T PLN02822        320 TEG---GFC--TGS-AR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDVL  363 (481)
T ss_pred             hCC---eEE--EcC-HH----HHHHHHhcCCceeeccccCHHHHHHHHHHHHHH
Confidence            888   999  655 66    555555444333333  3466677765555543

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.80  E-value=4.5e-18  Score=165.10  Aligned_cols=194  Identities=18%  Similarity=0.149  Sum_probs=138.8

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHHhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~  199 (363)
                      +.....+|+++++++...        +..++  +.+|++|+.++  +...+.|||+|+++.|.|....    ..++..|+
T Consensus        63 ~~p~~~~le~~lA~l~g~--------~~~i~--~~sG~~Al~~~--l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~  130 (403)
T PRK07503         63 SNPTLALLEQRMASLEGG--------EAAVA--LASGMGAITAT--LWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGV  130 (403)
T ss_pred             CCchHHHHHHHHHHHhCC--------CcEEE--EcCHHHHHHHH--HHHHcCCCCEEEEccCccchHHHHHHHHHhhCCE
Confidence            445578999999998643        22334  67889998887  4455789999999999986543    34557899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++.       .|++.+++++++   +++++++++|+||||.+.+   +++|.++|+++|+++|+|++|....... 
T Consensus       131 ~v~~vd~-------~d~~~l~~~i~~---~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~~-  196 (403)
T PRK07503        131 TVRHVDL-------TDPAALKAAISD---KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQR-  196 (403)
T ss_pred             EEEEeCC-------CCHHHHHHhcCc---cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            9888876       268899988863   4667778999999998876   5667777999999999999997654321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                           +.    .. ...++++|+||.++.+| .|.||+  + .+++.++++...  ........+.+++.+.++.+.|+.
T Consensus       197 -----~l----~~-g~Di~v~S~tK~l~g~gd~~gG~v--~-~~~~l~~~l~~~--~~~~~~g~~~s~~~a~l~l~~L~t  261 (403)
T PRK07503        197 -----PL----EL-GADLVVHSATKYLGGHGDITAGLV--V-GGKALADRIRLE--GLKDMTGAVMSPFDAFLLMRGLKT  261 (403)
T ss_pred             -----ch----hh-CCCEEEccccccccCCCceeEEEE--E-cCHHHHHHHHhh--hHHhCcCCCCCHHHHHHHHcCcch
Confidence                 11    11 23488999999999766 677877  5 557644443221  112334567888888888776653

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.80  E-value=6.9e-18  Score=163.21  Aligned_cols=192  Identities=14%  Similarity=0.087  Sum_probs=141.6

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~  199 (363)
                      +.....+|+++++++..        .+++++  ++||++|+.++  +..++.+||+|+++.|+|..+..    .+...|+
T Consensus        63 ~~pt~~~Le~~lA~l~g--------~~~~l~--~~sgt~Ai~~~--l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi  130 (394)
T PRK07050         63 ATPTSLALAQRLAEIEG--------GRHALL--QPSGLAAISLV--YFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI  130 (394)
T ss_pred             CCHHHHHHHHHHHHHhC--------CCeEEE--eccHHHHHHHH--HHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe
Confidence            55567889999998852        257877  99999999988  44557899999999999998764    4567899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++..       +.+.+++.++   ++++++++++|+||||   +..++++|+++|+++|+++|+|++|.....-. 
T Consensus       131 ~v~~vd~~-------~~~~l~~~i~---~~tklV~le~p~Np~~---~~~di~~I~~ia~~~gi~livD~a~a~~~~~~-  196 (394)
T PRK07050        131 TVRFYDPL-------IGAGIADLIQ---PNTRLIWLEAPGSVTM---EVPDVPAITAAARARGVVTAIDNTYSAGLAFK-  196 (394)
T ss_pred             EEEEECCC-------CHHHHHHhcC---CCCeEEEEECCCCCCc---cHhhHHHHHHHHHHcCCEEEEECCcccccccC-
Confidence            98887641       3467888776   3567888999999996   57789999999999999999999986543211 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                           +    .+. ...+++.|+||.++ -.+.+.|++  ++.+++    +.+.++........+.+++...++.+.|+
T Consensus       197 -----~----l~~-GaDi~v~S~tK~~~g~~~~~gG~v--~~~~~~----~~~~~~~~~~~~G~~~~~~~a~l~lr~l~  259 (394)
T PRK07050        197 -----P----FEH-GVDISVQALTKYQSGGSDVLMGAT--ITADAE----LHAKLKLARMRLGIGVSADDCSLVLRGLP  259 (394)
T ss_pred             -----H----HHc-CCeEEEEECCceecCCCCeeEEEE--EECCHH----HHHHHHHHHHhcCCCCCHHHHHHHHcCCC
Confidence                 1    112 23588999999996 234468988  776677    44444444344455778887777766554

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.80  E-value=1.4e-17  Score=160.34  Aligned_cols=176  Identities=16%  Similarity=0.041  Sum_probs=130.3

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecc
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY  207 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~  207 (363)
                      ..++++.+|+++..        +.+.+  ++|+++++..+  +..++.+||.|++..+.|......++..|++++.++.+
T Consensus        53 ~~~~~e~lA~~~g~--------~~~~i--~~g~~~a~~~~--~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~  120 (370)
T TIGR02539        53 IHDFLEDLAEFLGM--------DEARV--THGAREGKFAV--MHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHT  120 (370)
T ss_pred             HHHHHHHHHHHhCC--------CceEE--ECChHHHHHHH--HHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecC
Confidence            46788889998633        34555  89999998887  44556899999999888554446778999999999975


Q ss_pred             cCCCCCCCHHHHHHHHHcCC----CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCch
Q 017967          208 DPKTVGLDFEGMIADIKAAP----GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (363)
Q Consensus       208 ~~~~~~~d~~~l~~~l~~~~----~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~  283 (363)
                      ++.++.+|++.+++.+++..    ++++++++++|+||||...+   +++|+++|+++|+++|+||+|......   .  
T Consensus       121 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~---~--  192 (370)
T TIGR02539       121 GHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMP---V--  192 (370)
T ss_pred             CcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcC---C--
Confidence            44568899999999986411    24668888999999998766   456677799999999999999864321   1  


Q ss_pred             hHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhh
Q 017967          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL  336 (363)
Q Consensus       284 ~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~  336 (363)
                       ...   .. ...++++||||.++ +|.|+||+  +++ ++    +++.++..
T Consensus       193 -~~~---~~-~~di~v~s~sK~~~-~~g~~G~l--~~~-~~----~i~~l~~~  232 (370)
T TIGR02539       193 -SAK---EI-GADFIVGSGHKSMA-ASGPCGVL--GMS-EE----WEDIVLRK  232 (370)
T ss_pred             -CHH---Hc-CCCEEEeeCccccc-CCCCEEEE--EEC-HH----HHhhhccc
Confidence             111   12 23466799999998 67889999  665 66    45555443

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK06460 hypothetical protein; Provisional

Probab=99.80  E-value=4.1e-18  Score=163.98  Aligned_cols=189  Identities=15%  Similarity=0.077  Sum_probs=129.6

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCC----cchHHHHhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW----GNHKNIFNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y----~~~~~~~~~~G~  199 (363)
                      ......+|++++|++....       ..++   +.+|++++..+  +..++.+||+|+++.|.|    ..+...++..|+
T Consensus        43 ~~p~~~~L~~~lA~l~g~~-------~~v~---~~sG~~ai~~~--l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~  110 (376)
T PRK06460         43 ANPTVLELTKKIVELENAE-------MGVA---FSSGMGAISTT--ALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGV  110 (376)
T ss_pred             CCccHHHHHHHHHHHhCCC-------cEEE---eCCHHHHHHHH--HHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCc
Confidence            3567889999999996432       3443   46677888777  455578999999997654    455667788999


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      ++..++.+       +.+.+++.++   ++++++++++||||||.+++.++   |.++|+++|+++|+||+|......  
T Consensus       111 ~v~~~~~~-------~~~~l~~~~~---~~tklV~l~sp~NPtG~v~d~~~---I~~la~~~g~~vivDea~~~~~~~--  175 (376)
T PRK06460        111 NVDASNPG-------SDNIIEKAKS---KRYDVVFVENITNPLLRVVDITE---LSKVCKENGSILIVDATFSTPINQ--  175 (376)
T ss_pred             EEEEECCC-------CHHHHHHhcC---CCceEEEEECCCCCCCcccCHHH---HHHHHHHcCCEEEEECCcCccccC--
Confidence            98887652       1233444333   35678888999999999999765   667789999999999999764321  


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCcccccc-ccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSS  355 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l-~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~  355 (363)
                          .+.    .. ...++++|+||.++- .|.|+||+  ++ +++    ++++++........+.++..+..+.+.
T Consensus       176 ----~~l----~~-~~divv~S~sK~l~G~~~~~~G~~--~~-~~~----l~~~l~~~~~~~g~~~~~~~a~~~l~~  236 (376)
T PRK06460        176 ----KPL----EL-GADIVVHSASKFLAGHNDVIAGLA--AG-YGK----LLNVIDQMRRTLGTSLDPHAAYLTLRG  236 (376)
T ss_pred             ----Chh----hc-CCCEEEeecceeccCCCCceEEEE--ec-CHH----HHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence                011    11 346899999998852 23679998  55 466    455555554444555666665555443

>PRK02948 cysteine desulfurase; Provisional

Probab=99.80  E-value=1.5e-18  Score=167.59  Aligned_cols=234  Identities=13%  Similarity=-0.021  Sum_probs=151.2

Q ss_pred             CCCCCCccccHHHHHHHHHHHccCCCCCCCC--------CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHH
Q 017967           94 RTEELQPYVLDVVKKAENLMLERGENKEYLP--------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (363)
Q Consensus        94 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~--------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (363)
                      .|..+..++++.+.+++.+...... .++..        ..-..++|+.+++++..      ++++|++  +.|+++++.
T Consensus         4 ld~a~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~------~~~~i~~--~~g~t~a~~   74 (381)
T PRK02948          4 LDYAATTPMSKEALQTYQKAASQYF-GNESSLHDIGGTASSLLQVCRKTFAEMIGG------EEQGIYF--TSGGTESNY   74 (381)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--eCcHHHHHH
Confidence            4455556678888888876663211 11111        11245677888888643      2678987  999999988


Q ss_pred             HHHHHHHH--hCCCCEEEEcCCCCcc---hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          166 LAAALIER--YFPGAKVLISSPTWGN---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       166 l~~~l~~~--~~~gd~Vlv~~P~y~~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      ++...+..  ..+||.|++....|+.   +...++..|++++.++++  +++.+|++.+++.++   ++++++++++|+|
T Consensus        75 ~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~---~~~~lv~~~~~~n  149 (381)
T PRK02948         75 LAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVD--KSGLIRLVDLERAIT---PDTVLASIQHANS  149 (381)
T ss_pred             HHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeC--CCCCCCHHHHHHhcC---CCCEEEEEECCcC
Confidence            77433211  1478999999855544   444567789999999984  356789999999886   3467888999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      |||.+++.+   +|.++|+++|+++++|++ +.+...+.     .+    ......+++.|++|.+|.+|  +|++  +.
T Consensus       150 ~tG~~~~~~---~I~~l~~~~~~~vivD~~-~~~g~~~~-----~~----~~~~~d~~~~s~~K~~gp~G--~G~l--~~  212 (381)
T PRK02948        150 EIGTIQPIA---EIGALLKKYNVLFHSDCV-QTFGKLPI-----DV----FEMGIDSLSVSAHKIYGPKG--VGAV--YI  212 (381)
T ss_pred             CcEeehhHH---HHHHHHHHcCCEEEEECh-hhcccccc-----Cc----ccCCCCEEEecHHhcCCCCc--EEEE--EE
Confidence            999998754   677779999999999954 55543211     11    12245677899999999888  7988  54


Q ss_pred             CChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          321 SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ..+.....+............++++.+++.++...|+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~  250 (381)
T PRK02948        213 NPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAEN  250 (381)
T ss_pred             cCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHH
Confidence            42210000000000000113456777777777666554

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.79  E-value=7.2e-18  Score=162.31  Aligned_cols=193  Identities=12%  Similarity=0.085  Sum_probs=142.8

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (363)
                      +......|++++|++..        .+++++  ++||++++.++  +..++.+||+|+++.|+|......+    ...|+
T Consensus        51 ~npt~~~Le~~lA~leg--------~e~ivv--t~gg~~Ai~~~--l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi  118 (388)
T PRK08861         51 GNPNRGLLEQTLSELES--------GKGAVV--TNCGTSALNLW--VSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF  118 (388)
T ss_pred             CCchHHHHHHHHHHHhC--------CCeEEE--ECCHHHHHHHH--HHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe
Confidence            45667899999999953        268877  99999999888  4555789999999999998644333    34567


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++.       .|++.++++++   ++++++++++|+||||.+++.+   +|.++|+++|+++|+|++|....+.. 
T Consensus       119 ~v~~vd~-------~d~e~l~~~i~---~~tklV~lesP~NPtG~v~dl~---~I~~la~~~gi~vIvDea~~~~~~~~-  184 (388)
T PRK08861        119 KVQFVDQ-------SDAAALDAALA---KKPKLILLETPSNPLVRVVDIA---ELCQKAKAVGALVAVDNTFLTPVLQK-  184 (388)
T ss_pred             EEEEECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCccccccCC-
Confidence            7777642       47899988886   3567888899999999999865   56667899999999999998654321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCcccccc-ccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l-~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                           ++    +.+ -.++++|++|.++- .+.+.|++  ++.+++    +.+.++..........+++...++.+.|+.
T Consensus       185 -----pl----~~G-aDivv~S~tK~l~G~~d~~gG~i--~~~~~~----~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T  248 (388)
T PRK08861        185 -----PL----ELG-ADFVIHSTTKYINGHSDVIGGVL--ITKTKE----HAEELAWWGNCIGATGTPFDSYMTLRGIRT  248 (388)
T ss_pred             -----Cc----ccC-CCEEEeecceeccCCCcceeEEE--EecHHH----HHHHHHHHHhccCCCCChHHHHHHHhcCCC
Confidence                 11    112 23789999999874 34778988  666565    444444444455667888888888776653

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.79  E-value=6.1e-18  Score=163.54  Aligned_cols=194  Identities=15%  Similarity=0.129  Sum_probs=135.9

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHHhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~  199 (363)
                      +.....+|++++|++...        +..++  +.+|+.|+.++  +..++.+||.|+++.|.|...    ...+...|+
T Consensus        57 ~~p~~~~le~~lA~l~g~--------~~av~--~~sG~~Ai~~~--l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~  124 (391)
T TIGR01328        57 GNPTVSNLEGRIAFLEGT--------EAAVA--TSSGMGAIAAT--LLTILKAGDHLISDECLYGCTFALLEHALTKFGI  124 (391)
T ss_pred             CCchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe
Confidence            344567899999999643        23444  78889998777  455578999999999988644    344557898


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++++       |++.+++.++   ++++++++++|+||||.+.+   +++|.++|+++|+++|+|++|....... 
T Consensus       125 ~~~~vd~~-------d~e~l~~~i~---~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~-  190 (391)
T TIGR01328       125 QVDFINMA-------IPEEVKAHIK---DNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLTN-  190 (391)
T ss_pred             EEEEECCC-------CHHHHHHhhc---cCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccCC-
Confidence            88888762       7889988886   34678888999999999886   5567777999999999999997654321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                           +.    ..+ ..++++|+||.+|.+|.|+|++  ++.+++.+++++.....  .......+++...++...|+
T Consensus       191 -----~~----~~g-~Divv~S~sK~lgg~g~~~gG~--v~~~~~li~~l~~~~~~--~~~g~~l~~~~a~l~l~~L~  254 (391)
T TIGR01328       191 -----PV----ALG-VDVVVHSATKYIGGHGDVVAGL--ICGKAELLQQIRMVGIK--DMTGSVISPFDAWLILRGLK  254 (391)
T ss_pred             -----ch----hcC-CCEEEccccccccCCCCceEEE--EEcCHHHHHHHHHHHHH--hCCCCCCCcHHHHHHHhCcC
Confidence                 11    222 2378899999999999987555  35567744444321111  11123566666666666553

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.79  E-value=4.5e-18  Score=165.40  Aligned_cols=217  Identities=14%  Similarity=0.176  Sum_probs=144.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHc-c-----CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-R-----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-~-----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      +.++|..|..       ++++.+++++..... .     .....|....+..++++.+++++....+..  ..+|.+   
T Consensus        20 ~~~~~~~~~~-------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~---   87 (402)
T cd00378          20 ETLELIASEN-------FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQP---   87 (402)
T ss_pred             hCeeeeccCC-------cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeec---
Confidence            5789886653       346788888754331 1     111335566677778776555543333332  234433   


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-----HhhCCCCeEEEecccC-CCCCCCHHHHHHHHHcCCCCcE
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-----FNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~-----~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                      .||++++.++  +..++.|||+|++++|+|+.+...     ++..|.++..+++..+ +++.+|++.+++.+..  .+++
T Consensus        88 ~sgt~a~~~~--l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~--~~~~  163 (402)
T cd00378          88 HSGSQANLAV--YFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE--FKPK  163 (402)
T ss_pred             CCcHHHHHHH--HHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh--CCCC
Confidence            4678998877  455578999999999999877543     5667887777776433 2689999999999863  2455


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCC-CCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc
Q 017967          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G  310 (363)
                      ++++++++||+.     .++++|+++|+++|+++|+|++| .++.+.+..  ...+    . ..+ +++.|+||.+  +|
T Consensus       164 ~v~~~~~~~~~~-----~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~--~~~~----~-~~d-v~~~s~sK~l--~G  228 (402)
T cd00378         164 LIVAGASAYPRP-----IDFKRFREIADEVGAYLLVDMAHVAGLVAGGVF--PNPL----P-GAD-VVTTTTHKTL--RG  228 (402)
T ss_pred             EEEecCcccCCC-----cCHHHHHHHHHhcCCEEEEEccchhhhhhcccC--CCcc----c-CCc-EEEeccccCC--CC
Confidence            777788888753     25778899999999999999994 555543211  1111    1 233 6799999977  79


Q ss_pred             ccceEEEEeeCChhHHHHHHHHHHhhh
Q 017967          311 ERIGAMNVVCSSSDLAARVKSQLKRLA  337 (363)
Q Consensus       311 ~RvG~i~~v~~~~~~~~~~~~~l~~~~  337 (363)
                      +|.||+  ++++++    +++.+....
T Consensus       229 ~~gg~i--~~~~~~----~~~~l~~~~  249 (402)
T cd00378         229 PRGGLI--LTRKGE----LAKKINSAV  249 (402)
T ss_pred             CCceEE--EeccHH----HHHHHHHHh
Confidence            999999  777656    444454433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.79  E-value=4.7e-18  Score=163.03  Aligned_cols=190  Identities=16%  Similarity=0.103  Sum_probs=136.4

Q ss_pred             CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCC
Q 017967          123 LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDAR  198 (363)
Q Consensus       123 ~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G  198 (363)
                      .+.....+|++++|++. .       ++ .++  +.+|++++.++  +..++.+||+|+++.|+|..+...+    +..|
T Consensus        48 y~~p~~~~Le~~lA~l~-~-------~~-~v~--~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G  114 (366)
T PRK07582         48 ASNPTWRALEAALGELE-G-------AE-ALV--FPSGMAAITAV--LRALLRPGDTVVVPADGYYQVRALAREYLAPLG  114 (366)
T ss_pred             CCCccHHHHHHHHHHHc-C-------CC-EEE--ECCHHHHHHHH--HHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCe
Confidence            36778899999999995 2       24 444  57778898777  4556789999999999998887654    4579


Q ss_pred             CCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCC
Q 017967          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (363)
Q Consensus       199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~  278 (363)
                      ++++.++..+.      .+   . +.   ++++++++++|+||||.+.   ++++|+++|+++|+++|+|++|...... 
T Consensus       115 ~~v~~v~~~~~------~~---~-~~---~~t~lV~le~p~NPtg~v~---di~~I~~~a~~~g~~lvVD~t~~~~~~~-  177 (366)
T PRK07582        115 VTVREAPTAGM------AE---A-AL---AGADLVLAETPSNPGLDVC---DLAALAAAAHAAGALLVVDNTTATPLGQ-  177 (366)
T ss_pred             EEEEEECCCCh------HH---H-hc---cCceEEEEECCCCCCCCcc---CHHHHHHHHHHcCCEEEEECCCCCcccc-
Confidence            99999886321      11   1 22   2466777899999999765   5777888899999999999998642211 


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                           .++    +.+. .++++|+||.++ .+|+|+||+  ++.+++    +.+.++.........++++.+.++...|.
T Consensus       178 -----~p~----~~g~-Divv~S~sK~l~G~~g~~~G~v--~~~~~~----l~~~l~~~~~~~g~~~~~~~a~l~~r~l~  241 (366)
T PRK07582        178 -----RPL----ELGA-DLVVASDTKALTGHSDLLLGYV--AGRDPE----LMAAVERWRLLAGAIPGPFEAWLAHRSLG  241 (366)
T ss_pred             -----Cch----hcCC-cEEEecccccccCCCCeeEEEE--EcCcHH----HHHHHHHHHHHhCCCCCHHHHHHHHhccc
Confidence                 111    1222 368899999884 467999999  776676    44445544445566788888888887766


Q ss_pred             c
Q 017967          358 G  358 (363)
Q Consensus       358 ~  358 (363)
                      .
T Consensus       242 t  242 (366)
T PRK07582        242 T  242 (366)
T ss_pred             c
Confidence            3

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.79  E-value=1e-17  Score=159.57  Aligned_cols=209  Identities=16%  Similarity=0.061  Sum_probs=137.6

Q ss_pred             cEEeeccccCCCCCCccccHHHHHHHHHHHccCCC--CCC----CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y----~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      +++|....|.   |.+.. +.+.+++.+.++....  ..|    .......++++.+++++..       ++ .++  +.
T Consensus         3 ~~~~~~~~~~---~~~~~-~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-------~~-~iv--~~   68 (349)
T cd06454           3 VLNFCSNDYL---GLANH-PEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK-------EA-ALV--FS   68 (349)
T ss_pred             ceecccCCcc---ccCCC-HHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC-------CC-EEE--ec
Confidence            4556555443   33322 5666666666542110  112    2233446788888887632       23 333  56


Q ss_pred             chhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC--CCCcEEEEEc
Q 017967          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA--PGGSFILLHG  236 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~--~~~~~~~~i~  236 (363)
                      +|++++..+  +..++.+||.|+++.|.|+.+...++..|++++.++.       +|++.+++.+++.  ++++++++++
T Consensus        69 sg~~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~~  139 (349)
T cd06454          69 SGYAANDGV--LSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVTE  139 (349)
T ss_pred             cHHHHHHHH--HHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEEe
Confidence            667776655  3444679999999999999998888999999988753       4778888888753  2456788889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH-HhcCCeEEEEEcCccccccccccceE
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-ATRGMELLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~S~SK~~~l~G~RvG~  315 (363)
                      +++||||...+   +++|+++|+++|+++|+|++|........ ..  ....+ ......+++++|+||.++.+|   ||
T Consensus       140 ~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~-~~--~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~  210 (349)
T cd06454         140 GVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPH-GR--GVEEFGGLTDDVDIIMGTLGKAFGAVG---GY  210 (349)
T ss_pred             ccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCC-CC--ChhhhccccccCcEEEeechhhhcccC---CE
Confidence            99999998865   56778889999999999999864322211 01  11111 123356899999999998655   98


Q ss_pred             EEEeeCChhHHHH
Q 017967          316 MNVVCSSSDLAAR  328 (363)
Q Consensus       316 i~~v~~~~~~~~~  328 (363)
                      +  +.+ ++..++
T Consensus       211 i--~~~-~~~~~~  220 (349)
T cd06454         211 I--AGS-KELIDY  220 (349)
T ss_pred             E--ECC-HHHHHH
Confidence            8  554 663333

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.79  E-value=1.3e-17  Score=160.77  Aligned_cols=192  Identities=17%  Similarity=0.142  Sum_probs=137.0

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH---hhCCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---NDARVP  200 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~---~~~G~~  200 (363)
                      ......+|++.+|+++..        +++++  +.+|++|+.++  +..++.+||+|+++.|.|..+...+   +..|++
T Consensus        51 ~np~~~~lE~~lA~l~g~--------~~~l~--~~sG~~Ai~~~--l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~  118 (385)
T PRK08574         51 ENPTLRPLEEALAKLEGG--------VDALA--FNSGMAAISTL--FFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVK  118 (385)
T ss_pred             CCccHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcE
Confidence            455678999999999632        45666  79999998877  5566889999999999999887766   445766


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      +..+.        +|++.+++++++  .+++++++++|+||||.+++.   ++|+++|+++|+++|+|++|.......  
T Consensus       119 v~~~~--------~d~~~l~~~i~~--~~tklV~ie~p~NPtG~v~dl---~~I~~la~~~gi~livD~t~a~~~~~~--  183 (385)
T PRK08574        119 VVLAY--------PSTEDIIEAIKE--GRTKLVFIETMTNPTLKVIDV---PEVAKAAKELGAILVVDNTFATPLLYR--  183 (385)
T ss_pred             EEEEC--------CCHHHHHHhcCc--cCceEEEEECCCCCCCEecCH---HHHHHHHHHcCCEEEEECCCCccccCC--
Confidence            65542        367889888863  146677789999999999874   567888999999999999985332111  


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCccccccccccc-eEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                          +.    .. ...+++.|+||.++.+|-++ |++  ++.+++.    .+.++..........+++...++...|+
T Consensus       184 ----~l----~~-GaDivv~S~sK~l~g~~d~~gG~v--i~~~~~~----~~~~~~~~~~~g~~~~p~~a~l~l~~l~  246 (385)
T PRK08574        184 ----PL----RH-GADFVVHSLTKYIAGHNDVVGGVA--VAWSGEF----LEELWEWRRRLGTIMQPFEAYLVLRGLK  246 (385)
T ss_pred             ----hh----hh-CCcEEEeeCceeecCCCCceeEEE--EECcHHH----HHHHHHHHHhcCCCCCHHHHHHHHcccC
Confidence                11    11 24588999999998777765 656  5666764    3444333333344666776666666554

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.79  E-value=2.2e-18  Score=168.10  Aligned_cols=160  Identities=17%  Similarity=0.118  Sum_probs=123.2

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHHhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~  199 (363)
                      +.....+|++.+|+++..        +..++  +.+|+.|+..+  +..++.+||+|+++.+.|.+..    ..++..|+
T Consensus        55 ~~p~~~~le~~lA~l~g~--------~~~v~--~~sG~~Ai~~a--l~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  122 (418)
T TIGR01326        55 MNPTTDVLEQRIAALEGG--------VAALA--VASGQAAITYA--ILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGI  122 (418)
T ss_pred             CChhHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH--HHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCc
Confidence            445568999999999632        34555  89999998777  5556789999999999986543    34567899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++.       .|++.+++++++   +++++++++|+||||.+.+   +++|.++|+++|+++|+|++|....... 
T Consensus       123 ~v~~v~~-------~d~~~l~~~l~~---~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~~~-  188 (418)
T TIGR01326       123 EVRFVDP-------DDPEEFEKAIDE---NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYLCR-  188 (418)
T ss_pred             EEEEECC-------CCHHHHHHhcCc---CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhcCC-
Confidence            9988874       178999998863   4667778999999999876   5677778999999999999986432110 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                           +    .+. ...+++.|+||.++.+|+|+||+  +++
T Consensus       189 -----~----l~~-g~Divv~S~sK~l~g~G~~lGg~--v~~  218 (418)
T TIGR01326       189 -----P----IDH-GADIVVHSATKYIGGHGTAIGGV--IVD  218 (418)
T ss_pred             -----c----hhc-CCeEEEECccccccCCccceEEE--EEe
Confidence                 1    112 35789999999999999999999  554

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.79  E-value=9.6e-18  Score=163.37  Aligned_cols=205  Identities=14%  Similarity=0.046  Sum_probs=143.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCC----CCC----CCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK----EYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~----~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+-|..+.      ..++++.+.+++.+........    .|.    ...-..++|+++|+++...     ++++|++ 
T Consensus        23 ~~iYld~a~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~-   90 (406)
T PRK09295         23 PLAYLDSAA------SAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINAR-----SAEELVF-   90 (406)
T ss_pred             ceEEEeCcc------cccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcC-----CCCeEEE-
Confidence            356665443      3556777888876665321100    110    0122568889999987542     2578988 


Q ss_pred             eccchhHHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~--~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                       |.|+|++++++...+.  .+.+||+|+++++.|+.    +...++..|++++.++.+  .++.+|++.+++.+++   +
T Consensus        91 -t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~---~  164 (406)
T PRK09295         91 -VRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPALFDE---R  164 (406)
T ss_pred             -eCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC--CCCCCCHHHHHHhcCC---C
Confidence             9999999998854331  35699999999987753    455667889999999984  3567899999998863   5


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ++++++++|+||||..++.   ++|.++|+++|+++++|++|...... .     .+    ......+++.|++|.+|.+
T Consensus       165 t~lv~l~~~~n~tG~~~~~---~~i~~~~~~~~~~vivD~a~~~g~~~-~-----~~----~~~~~D~~~~s~~K~~gp~  231 (406)
T PRK09295        165 TRLLAITHVSNVLGTENPL---AEMIALAHQHGAKVLVDGAQAVMHHP-V-----DV----QALDCDFYVFSGHKLYGPT  231 (406)
T ss_pred             cEEEEEecchhcccccCCH---HHHHHHHHHcCCEEEEEcccccCccc-c-----Cc----hhcCCCEEEeehhhccCCC
Confidence            6788889999999999985   55677799999999999998654321 1     11    1112347889999988866


Q ss_pred             cccceEEEEeeCChh
Q 017967          310 AERIGAMNVVCSSSD  324 (363)
Q Consensus       310 G~RvG~i~~v~~~~~  324 (363)
                      |  +||+  +.+ ++
T Consensus       232 G--~G~l--~~~-~~  241 (406)
T PRK09295        232 G--IGIL--YVK-EA  241 (406)
T ss_pred             C--cEEE--EEc-hH
Confidence            6  7999  665 54

>PLN02483 serine palmitoyltransferase

Probab=99.79  E-value=2e-17  Score=164.13  Aligned_cols=220  Identities=13%  Similarity=0.077  Sum_probs=149.7

Q ss_pred             CCcEEeeccccCCCCC-CccccHHHHHHHHHHHcc--CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccc
Q 017967           83 EKKLNLGVGAYRTEEL-QPYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~-~~~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (363)
                      ...+||+...|..... .+.+.+.+.+++.+....  +....|+...+..++++++|+++..       ++.|++  +.|
T Consensus       100 ~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~-------~~ai~~--~~G  170 (489)
T PLN02483        100 RRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK-------PAAIVF--GMG  170 (489)
T ss_pred             ceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC-------CcEEEE--CCH
Confidence            4689999888864432 233456777777665422  2224588888999999999999753       456655  554


Q ss_pred             hhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC-----C-----CC
Q 017967          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-----P-----GG  229 (363)
Q Consensus       160 gt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-----~-----~~  229 (363)
                       ..+...+  +..++.+||.|++.+|+|..+...++..|++++.++..       |.+.+++.+++.     +     .+
T Consensus       171 -~~an~~~--i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~  240 (489)
T PLN02483        171 -YATNSTI--IPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWK  240 (489)
T ss_pred             -HHHHHHH--HHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCc
Confidence             4443333  34457899999999999999999999999999999852       456666665421     1     12


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH--hcCCeEEEEEcCccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA--TRGMELLVAQSYSKNLG  307 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~S~SK~~~  307 (363)
                      ++++++....|++|...   ++++|+++|+++++++|+||+|.....+.   ....+..+.  +..+..|+++||||.||
T Consensus       241 k~livve~v~s~~G~~~---~l~~I~~la~~~~~~livDEa~s~g~~G~---~G~g~~~~~~v~~~~~dI~~~SfSKs~g  314 (489)
T PLN02483        241 KIIVIVEGIYSMEGELC---KLPEIVAVCKKYKAYVYLDEAHSIGAVGK---TGRGVCELLGVDPADVDIMMGTFTKSFG  314 (489)
T ss_pred             eEEEEECCCCCCCCccc---CHHHHHHHHHHcCCEEEEECcCccCccCC---CCCchHHhcCCCcccCcEEEEecchhcc
Confidence            33555444569999875   56677888999999999999987433321   111111221  22356799999999999


Q ss_pred             cccccceEEEEeeCChhHHHHHHHHHHhhh
Q 017967          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLA  337 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~  337 (363)
                      ++|   ||+  +++ ++    +++.++...
T Consensus       315 ~~G---G~i--~~~-~~----li~~l~~~~  334 (489)
T PLN02483        315 SCG---GYI--AGS-KE----LIQYLKRTC  334 (489)
T ss_pred             cCc---eEE--EcC-HH----HHHHHHHhC
Confidence            877   999  654 66    566666543

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.78  E-value=9.3e-18  Score=162.71  Aligned_cols=193  Identities=10%  Similarity=0.035  Sum_probs=140.4

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCC----cchHHHHhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW----GNHKNIFNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y----~~~~~~~~~~G~  199 (363)
                      +.....+|++.+|++...        ++.++  +.+|+.|+..+  +..++.+||+|+++...|    ..+...++..|+
T Consensus        68 ~~p~~~~le~~lA~l~g~--------~~al~--~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~  135 (403)
T PRK07810         68 GNPTVSMFEERLRLIEGA--------EACFA--TASGMSAVFTA--LGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV  135 (403)
T ss_pred             CCchHHHHHHHHHHHhCC--------CcEEE--ECChHHHHHHH--HHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc
Confidence            455578999999999532        35555  79999998876  455678999999988544    444556778899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++.       .|++.+++++++   +++++++.+|+||||.+.+   +++|.++|+++|+++|+|++|....... 
T Consensus       136 ~v~~vd~-------~d~~~l~~ai~~---~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~-  201 (403)
T PRK07810        136 ETVFVDG-------EDLSQWEEALSV---PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQR-  201 (403)
T ss_pred             EEEEECC-------CCHHHHHHhcCc---CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            9998864       388999998873   4678888999999998875   6677778999999999999997554321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccccccccc-eEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                           +.    +. ...+++.|++|.++..|.++ |++  +++ ++.+.   +.++...+....+.+++.+.++.+.|+.
T Consensus       202 -----~~----~~-gaDivv~S~tK~l~g~g~~~gG~v--~~~-~~~~~---~~l~~~~~~~g~~~s~~~a~l~l~~L~t  265 (403)
T PRK07810        202 -----GL----PL-GADVVVYSGTKHIDGQGRVLGGAI--LGD-REYID---GPVQKLMRHTGPALSAFNAWVLLKGLET  265 (403)
T ss_pred             -----hh----hc-CCcEEEccCCceecCCcCceeEEE--EeC-hHHHH---HHHHHHHHHhCCCCCHHHHHHHHhccCc
Confidence                 11    11 23578899999998889998 666  555 44322   2233333344557888888888776653

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.78  E-value=2.1e-17  Score=158.88  Aligned_cols=192  Identities=19%  Similarity=0.149  Sum_probs=141.8

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~  199 (363)
                      ......+|++.++++...        +..++  +.+|++|+.++  +..++.+||+|+++.+.|......    ++..|+
T Consensus        38 ~~p~~~~le~~la~l~g~--------~~a~~--~~sG~~Ai~~~--l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~  105 (369)
T cd00614          38 GNPTVDALEKKLAALEGG--------EAALA--FSSGMAAISTV--LLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI  105 (369)
T ss_pred             CChhHHHHHHHHHHHHCC--------CCEEE--EcCHHHHHHHH--HHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe
Confidence            566678999999998532        34555  78899998888  555578999999999999876543    446788


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      ++..++.+       |++.+++.+++   +++++++.+|+||||.+.+   +++|+++|+++|+++|+|++|....... 
T Consensus       106 ~~~~v~~~-------d~~~l~~~i~~---~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~-  171 (369)
T cd00614         106 EVTFVDPD-------DPEALEAAIKP---ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQR-  171 (369)
T ss_pred             EEEEeCCC-------CHHHHHHhcCC---CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCC-
Confidence            88887652       58889888863   4667888999999999886   5677788999999999999987654321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                           +.    +. ...+++.|+||.++.+| .+.||+  ++.+++.    ++.++........+.+++.+.++...|+
T Consensus       172 -----~~----~~-g~Divv~S~tK~l~g~~~~~gG~v--~~~~~~l----~~~l~~~~~~~g~~~~p~~a~~~l~~l~  234 (369)
T cd00614         172 -----PL----EL-GADIVVHSATKYIGGHSDVIAGVV--VGSGEAL----IQRLRFLRLALGTILSPFDAWLLLRGLK  234 (369)
T ss_pred             -----hh----hh-CCcEEEeccceeccCCCCceEEEE--EeCcHHH----HHHHHHHHHhhCCCCCHHHHHHHHcCCC
Confidence                 11    11 34588999999998666 789999  7765464    4444444333455677888887766664

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.78  E-value=1.4e-17  Score=163.08  Aligned_cols=246  Identities=16%  Similarity=0.119  Sum_probs=160.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.....-|+  -.+.+.+++.+.+.... ..+.+..+..+|++++++++..       .++|++  +.||++|
T Consensus        49 ~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~-~~~~~~~~~~~lae~l~~~~~~-------~~~v~~--~~sGseA  116 (423)
T TIGR00713        49 EYIDYVLSWGPLILGH--AHPRVVEAVKEALERGT-SYGAPTEAEILLAKEIISRVPS-------VEMVRF--VNSGTEA  116 (423)
T ss_pred             EEEEccccccccccCC--CCHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhCCc-------ccEEEE--eCCHHHH
Confidence            7899988864322232  35677777666664432 2223567889999999998532       257877  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh---CCCCeEEEecccC-------CCC---CCCHHHHHHHHHcCCCCc
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFND---ARVPWSEYRYYDP-------KTV---GLDFEGMIADIKAAPGGS  230 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~---~G~~~~~v~~~~~-------~~~---~~d~~~l~~~l~~~~~~~  230 (363)
                      ++.+..+...+...++|++..++|.++...+..   .|......+..+.       ...   ..|++.+++.+...+++.
T Consensus       117 ~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~  196 (423)
T TIGR00713       117 TMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEI  196 (423)
T ss_pred             HHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcE
Confidence            999866655555568999999999987543321   1111111111000       000   127899999887533333


Q ss_pred             -EEEEEcCCCCCCCCCCC-HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc
Q 017967          231 -FILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (363)
Q Consensus       231 -~~~~i~~p~NPTG~~~s-~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l  308 (363)
                       .+++-+.++| +|.+.+ .+.+++|.++|+++|+++|+||+|.+|.++.    ..... .....+++   .+|||.++ 
T Consensus       197 aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~----~~~~~-~~~~~pDi---~t~sK~l~-  266 (423)
T TIGR00713       197 AGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVAL----GGAQE-YFGVEPDL---TTLGKIIG-  266 (423)
T ss_pred             EEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCc----chhHH-HhCCCcch---hhhhhhhc-
Confidence             4455478999 798887 6889999999999999999999999996542    11111 11222332   37999999 


Q ss_pred             ccccceEEEEeeCChhHHHHHHHHHHh---hhccccCCCchHHHHHHhccccc
Q 017967          309 YAERIGAMNVVCSSSDLAARVKSQLKR---LARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       309 ~G~RvG~i~~v~~~~~~~~~~~~~l~~---~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +|+|+||+  +++ ++    +.+.+..   ......++.++++|.++...|+.
T Consensus       267 ~G~pig~v--~~~-~~----i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~  312 (423)
T TIGR00713       267 GGLPVGAF--GGR-RE----IMERLAPEGPVYQAGTLSGNPLAMAAGLATLKL  312 (423)
T ss_pred             CCCceeee--eEH-HH----HHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHH
Confidence            99999999  665 56    4554432   11223447788888887666653

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.78  E-value=1.2e-17  Score=162.89  Aligned_cols=251  Identities=13%  Similarity=0.046  Sum_probs=155.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+||+..|......++  -.+.+.+++.+.+...  ..|....+..++...+++.+....+.  ..+++++  +.||++|
T Consensus        37 ~~id~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~--~~sgsea  108 (413)
T cd00610          37 RYLDFLSGIGVLNLGH--NHPEVVEALKEQLAKL--THFSLGFFYNEPAVELAELLLALTPE--GLDKVFF--VNSGTEA  108 (413)
T ss_pred             EEEEcCccHHhhccCC--CCHHHHHHHHHHHHhC--cCccCcccCCHHHHHHHHHHHHhCCC--CCCEEEE--cCcHHHH
Confidence            7899987642212222  2455666665555321  23433222334444444444333332  3578888  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC-------------CCCeEEEecccC----CCCCCCHHHHHHHHHcC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-------------RVPWSEYRYYDP----KTVGLDFEGMIADIKAA  226 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~~~~~----~~~~~d~~~l~~~l~~~  226 (363)
                      ++.+..++..+.++++|++.+++|.++.......             +.+++.+|..+.    ..+..|++.+++.++..
T Consensus       109 ~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  188 (413)
T cd00610         109 VEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH  188 (413)
T ss_pred             HHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC
Confidence            9998665544568899999999998865443321             224556665211    12445899999998754


Q ss_pred             CCCcEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccc
Q 017967          227 PGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (363)
Q Consensus       227 ~~~~~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  305 (363)
                      +++..++++...+|++|..+ +.+.+++|.++|+++|+++|+||+|.++...+   ..... ...+...+   +.||||.
T Consensus       189 ~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g---~~~~~-~~~~~~~d---~~t~sK~  261 (413)
T cd00610         189 PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTG---KMFAF-EHFGVEPD---IVTLGKG  261 (413)
T ss_pred             CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhhH-hhcCCCCC---eEEEccc
Confidence            34455666555566779876 67779999999999999999999999874332   11111 11121222   4589999


Q ss_pred             cccccccceEEEEeeCChhHHHHHHHHH--HhhhccccCCCchHHHHHHhcccc
Q 017967          306 LGLYAERIGAMNVVCSSSDLAARVKSQL--KRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       306 ~~l~G~RvG~i~~v~~~~~~~~~~~~~l--~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ++ .|+|+||+  +++ ++    +++.+  .........+.++++|.++...|+
T Consensus       262 l~-~g~~~g~~--~~~-~~----~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~  307 (413)
T cd00610         262 LG-GGLPLGAV--LGR-EE----IMDAFPAGPGLHGGTFGGNPLACAAALAVLE  307 (413)
T ss_pred             cc-CccccEEE--EEc-HH----HHHhhccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            99 58999999  664 66    44443  223233345677777777755543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.78  E-value=2e-17  Score=159.89  Aligned_cols=192  Identities=15%  Similarity=0.147  Sum_probs=132.7

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~  199 (363)
                      +.....+|++.+|+++..       ++.+ +  +.+|+.++.++  +..++.+||+|+++.|.|......+.    ..|+
T Consensus        59 ~~pt~~~Le~~lA~l~G~-------~~al-~--~~sG~~Ai~~~--l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi  126 (386)
T PRK06767         59 GNPTVKLFEERMAVLEGG-------EEAL-A--FGSGMAAISAT--LIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMI  126 (386)
T ss_pred             CCcchHHHHHHHHHHhCC-------CcEE-E--ECCHHHHHHHH--HHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCe
Confidence            455578999999999642       2344 3  57778887766  55567899999999998877655543    3455


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      ++..++.       .|++.+++++++   +++++++++|+||||.+++.   ++|.++|+++|+++|+|++|....... 
T Consensus       127 ~~~~~~~-------~d~~~l~~~i~~---~tklV~lesp~NptG~v~dl---~~I~~la~~~g~~vivD~a~a~~~~~~-  192 (386)
T PRK06767        127 THSFCDM-------ETEADIENKIRP---NTKLIFVETPINPTMKLIDL---KQVIRVAKRNGLLVIVDNTFCSPYLQR-  192 (386)
T ss_pred             EEEEeCC-------CCHHHHHHhhCc---CceEEEEeCCCCCCceecCH---HHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            5444432       478999988863   56788889999999999875   566667899999999999986433321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccccccccc-eEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                           +.    ..+ ..+++.|+||.++.+|.|+ ||+  +++ ++.++++.+...   .......+++.+.++...|+
T Consensus       193 -----pl----~~g-~Div~~S~sK~l~g~g~~~gG~v--~~~-~~~i~~~~~~~~---~~~g~~~~~~~a~l~~~~L~  255 (386)
T PRK06767        193 -----PL----ELG-CDAVVHSATKYIGGHGDVVAGVT--ICK-TRALAEKIRPMR---KDIGGIMAPFDAWLLLRGLK  255 (386)
T ss_pred             -----ch----hcC-CcEEEecCcceecCCCCceeEEE--EeC-hHHHHHHHHHHH---HHhCCCCCHHHHHHHHcCCC
Confidence                 11    122 2377889999999889996 788  655 554443333222   22334557777777766655

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.77  E-value=1.7e-17  Score=160.64  Aligned_cols=243  Identities=13%  Similarity=0.075  Sum_probs=154.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.-...-|.  -.+.+.+++.+.++...  ...| ......++.+.++++    .+    .+++++  ++||+
T Consensus        32 ~~lD~~~g~~~~~lGh--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~----~~----~~~v~~--~~sGs   98 (389)
T PRK01278         32 RYLDFASGIAVNSLGH--AHPHLVEALKEQAEKLWHVSNLY-RIPEQERLAERLVEN----SF----ADKVFF--TNSGA   98 (389)
T ss_pred             EEEECCccHhhccCCC--CCHHHHHHHHHHHHhcCcccccc-CChHHHHHHHHHHhh----CC----CCEEEE--cCCcH
Confidence            6888877642222232  23455555555443211  0111 122233444444443    11    368877  99999


Q ss_pred             HHHHHHHHHHHHh--CCCC----EEEEcCCCCcchHHHHhhCCCCeEEEeccc--CCCC----CCCHHHHHHHHHcCCCC
Q 017967          162 GSLRLAAALIERY--FPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYD--PKTV----GLDFEGMIADIKAAPGG  229 (363)
Q Consensus       162 ~al~l~~~l~~~~--~~gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~--~~~~----~~d~~~l~~~l~~~~~~  229 (363)
                      +|++.+..+...+  .+||    +|++.+++|.++.......+..........  ..++    ..|++.+++.+.+   +
T Consensus        99 eA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~  175 (389)
T PRK01278         99 EAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP---N  175 (389)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCC---C
Confidence            9999986655433  3666    899999999988766654443322211100  0111    1589999998863   4


Q ss_pred             cEEEEEcCCCCCCC-CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc
Q 017967          230 SFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (363)
Q Consensus       230 ~~~~~i~~p~NPTG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l  308 (363)
                      ++++++...+||+| .+++.+.+++|.++|++||+++|+||+|.++...+.   ......+ ...++   +.+|||.++ 
T Consensus       176 ~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~-~~~pd---i~t~sK~l~-  247 (389)
T PRK01278        176 TAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK---LFAHEWA-GVTPD---IMAVAKGIG-  247 (389)
T ss_pred             eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc---ceeeccc-CCCCC---EEEEehhcc-
Confidence            66777777788888 789999999999999999999999999998865431   1111111 11122   358999998 


Q ss_pred             ccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       309 ~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +|+|+||+  +++ ++    +.+.+........++.++++|.++...|+
T Consensus       248 ~G~~ig~~--~~~-~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  289 (389)
T PRK01278        248 GGFPLGAC--LAT-EE----AAKGMTPGTHGSTYGGNPLAMAVGNAVLD  289 (389)
T ss_pred             CCcceEEE--EEc-HH----HHhccCCCCCCCCCCccHHHHHHHHHHHH
Confidence            99999999  776 44    45555544455566788899998866554

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.77  E-value=3.3e-17  Score=158.03  Aligned_cols=192  Identities=18%  Similarity=0.186  Sum_probs=136.5

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHHhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~  199 (363)
                      +.....+|++.+++++..        +.+++  +.+|+.|+.++  +..++.+||+|+++.+.|...    ...++..|+
T Consensus        52 ~~p~~~~le~~la~l~g~--------~~~~~--~~sG~~Ai~~a--l~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~  119 (380)
T TIGR01325        52 ANPTVAAFEERIAALEGA--------ERAVA--TATGMSAIQAA--LMTLLQAGDHVVASRSLFGSTVGFISEILPRFGI  119 (380)
T ss_pred             CCchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCC
Confidence            344578999999998532        35555  89999998887  455578999999999988653    345677899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++..       |++.++++++   ++++++++++|+||+|...+   +++|.++|+++|+++|+|++|..+.... 
T Consensus       120 ~v~~v~~~-------d~~~l~~~i~---~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~~-  185 (380)
T TIGR01325       120 EVSFVDPT-------DLNAWEAAVK---PNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQQ-  185 (380)
T ss_pred             EEEEECCC-------CHHHHHHhcC---CCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            98888752       6888888876   34678888999999999875   5667777999999999999997654321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                           ++    +. ...+++.|+||.++.+|.++|.+  +..+++.++++    +..........+++...++...|+
T Consensus       186 -----pl----~~-g~Divv~S~sK~l~g~g~~~gG~--vv~~~~~~~~l----~~~~~~~g~~~~p~~a~~~l~~l~  247 (380)
T TIGR01325       186 -----PL----KL-GADVVVYSATKHIDGQGRVMGGV--IAGSEELMAEV----AVYLRHTGPAMSPFNAWVLLKGLE  247 (380)
T ss_pred             -----ch----hh-CCCEEEeeccceecCCCCeEEEE--EEeCHHHHHHH----HHHHHhhCCCCCHHHHHHHHhccC
Confidence                 11    11 23477889999999888888444  24446644444    333333444556666666655544

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.77  E-value=3.1e-17  Score=160.04  Aligned_cols=239  Identities=13%  Similarity=0.071  Sum_probs=147.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC------CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG------ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      ..++++...|....    ..+.+.++..+....-      ....|+......+|++++|+++..       ++.+++  +
T Consensus        47 ~~~~~~sn~yl~l~----~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~-------~~~i~~--~  113 (410)
T PRK13392         47 RVTIWCSNDYLGMG----QHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK-------ESALLF--T  113 (410)
T ss_pred             eEEEEECCCccCCC----CCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC-------CCEEEE--C
Confidence            57888877664222    3456666665544221      001232333567899999999642       355655  4


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC-CCcEEEEEc
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHG  236 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~  236 (363)
                      . |+.+...+...+....+||.|++..+.|..+...++..|.++..++.       -|.+.+++.+.... +++++++++
T Consensus       114 s-G~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~t~~v~i~  185 (410)
T PRK13392        114 S-GYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH-------NDLADLEEQLASVDPDRPKLIAFE  185 (410)
T ss_pred             c-HHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC-------CCHHHHHHHHHhccCCCCEEEEEe
Confidence            4 56665554222222248898888777777777777888988766643       14556666665322 357788899


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCe-EEEEEcCccccccccccceE
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~-vi~~~S~SK~~~l~G~RvG~  315 (363)
                      +|+||||.+++   +++|.++|+++++++|+||+|....++..   ...+.......++ .++++||||.||++|   ||
T Consensus       186 ~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~---g~g~~~~~~~~~~~div~~tlsK~~g~~G---G~  256 (410)
T PRK13392        186 SVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGAR---GGGIAERDGLMDRIDMIQGTLAKAFGCLG---GY  256 (410)
T ss_pred             CCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCC---CCchhhhccCCCCCcEEEEEChHhhhccc---ch
Confidence            99999999987   56667779999999999999983333211   1111111111123 388899999999988   89


Q ss_pred             EEEeeCChhHHHHHHHHHHhhhccc--cCCCchHHHHHHhcccccc
Q 017967          316 MNVVCSSSDLAARVKSQLKRLARPM--YSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       316 i~~v~~~~~~~~~~~~~l~~~~~~~--~~~~s~~~q~~~~~~l~~~  359 (363)
                      +  ++ +++    +++.+++.....  ....+++.|.++...|+..
T Consensus       257 ~--~~-~~~----~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~  295 (410)
T PRK13392        257 I--AA-SAD----LIDFVRSFAPGFIFTTALPPAVAAGATAAIRHL  295 (410)
T ss_pred             h--hc-CHH----HHHHHHHhCcchhccCcCCHHHHHHHHHHHHHH
Confidence            8  55 466    555555554332  2234556677666666543

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.77  E-value=2.6e-17  Score=159.97  Aligned_cols=237  Identities=16%  Similarity=0.108  Sum_probs=154.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-C-CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      ..+|+..|.....-++  -.+.+.+++.+.+.. . ....|....+ .+|.+.+++++. .   . .++++++  +.||+
T Consensus        44 ~~lD~~s~~~~~~lG~--~~p~v~~ai~~~~~~~~~~~~~~~~~~~-~~la~~l~~~~~-~---~-~~~~v~~--~~sgs  113 (398)
T PRK03244         44 EYLDLLGGIAVNALGH--AHPAVVEAVTRQLATLGHVSNLFATEPQ-IALAERLVELLG-A---P-EGGRVFF--CNSGA  113 (398)
T ss_pred             EEEECCcCHhhccCCC--CCHHHHHHHHHHHHhccCccCccCCHHH-HHHHHHHHHhCC-C---C-CCCEEEE--eCchH
Confidence            7899988754333332  245666666655532 1 1134643333 466666666532 1   1 2468888  99999


Q ss_pred             HHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHh-hCCC------------CeEEEecccCCCCCCCHHHHHHHHHcCC
Q 017967          162 GSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (363)
Q Consensus       162 ~al~l~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (363)
                      +|++.+..+...  +| +.|+..+++|.++..... ..|.            ++..+|.       .|++.+++.+.   
T Consensus       114 ea~~~al~~~~~--~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~---  181 (398)
T PRK03244        114 EANEAAFKLARL--TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVD---  181 (398)
T ss_pred             HHHHHHHHHHHH--HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhc---
Confidence            999999665433  45 577777889987754332 2221            2223322       37889998875   


Q ss_pred             CCcEEEEEcCCCCCCCCCCCHHH-HHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc
Q 017967          228 GGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (363)
Q Consensus       228 ~~~~~~~i~~p~NPTG~~~s~~~-~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  306 (363)
                      ++..++++.+++||||.+++.++ +++|.++|+++|+++|+||+|.+|...+   ...... .....+++   .+|||.+
T Consensus       182 ~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g---~~~~~~-~~~~~pDi---~t~sK~l  254 (398)
T PRK03244        182 DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG---AWFAHQ-HDGVTPDV---VTLAKGL  254 (398)
T ss_pred             CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccc---hHHhhh-hhCCCCCE---EEEchhh
Confidence            34667777888999999997766 9999999999999999999998876542   111111 11222343   3889999


Q ss_pred             ccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      + +|+|+||+  +++ ++    +++.+........++.++++|.++...|+
T Consensus       255 ~-~G~~ig~~--~~~-~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~  297 (398)
T PRK03244        255 G-GGLPIGAC--LAF-GP----AADLLTPGLHGSTFGGNPVACAAALAVLD  297 (398)
T ss_pred             h-CCcccEEE--EEc-HH----HHhhccCCCCcCCCCCCHHHHHHHHHHHH
Confidence            9 99999999  776 55    45555443334455788899998887765

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.76  E-value=3.4e-17  Score=158.95  Aligned_cols=197  Identities=17%  Similarity=0.167  Sum_probs=136.8

Q ss_pred             CCCccccHHHHHHHHHHHccCC---CCCCCCCcc----hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHH
Q 017967           97 ELQPYVLDVVKKAENLMLERGE---NKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAA  169 (363)
Q Consensus        97 ~~~~~~~~~v~~a~~~~~~~~~---~~~Y~~~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~  169 (363)
                      .+...+++.+.+++.+......   ...|....+    ..++|+.+++++...      +++|++  +.|+++++.++..
T Consensus        24 ~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~------~~~v~~--~~~~t~~l~~~~~   95 (397)
T TIGR01976        24 PAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNAD------PPEVVF--GANATSLTFLLSR   95 (397)
T ss_pred             CccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCC------CCeEEE--eCCHHHHHHHHHH
Confidence            3445567788888766653211   123543333    458888888886432      346777  8999999887644


Q ss_pred             HHH-HhCCCCEEEEcCCCCcchH----HHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCC
Q 017967          170 LIE-RYFPGAKVLISSPTWGNHK----NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGI  244 (363)
Q Consensus       170 l~~-~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~  244 (363)
                      .+. .+.|||+|++.+|.|....    ..++..|++++.++.++ +++.+|++.+++.++   ++++++++++|+||||.
T Consensus        96 ~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~  171 (397)
T TIGR01976        96 AISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDE-ATGELHPDDLASLLS---PRTRLVAVTAASNTLGS  171 (397)
T ss_pred             HHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccc-cCCCcCHHHHHHhcC---CCceEEEEeCCCCCCCc
Confidence            332 3569999999999886543    45577899999998843 357789999999886   35678888999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       245 ~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      .++   +++|.++|+++|+++|+|+++.. ...     ...+   .+.+ ..+++.|++|.+|   .|+|++  +++ ++
T Consensus       172 ~~~---~~~i~~~~~~~~~~~ivD~a~~~-~~~-----~~~~---~~~~-~d~~~~s~~K~~g---~~~G~l--~~~-~~  232 (397)
T TIGR01976       172 IVD---LAAITELVHAAGALVVVDAVHYA-PHG-----LIDV---QATG-ADFLTCSAYKFFG---PHMGIL--WGR-PE  232 (397)
T ss_pred             cCC---HHHHHHHHHHcCCEEEEehhhhc-ccc-----CCCH---HHcC-CCEEEEechhhcC---CceEEE--EEc-HH
Confidence            876   66677779999999999999632 111     1111   1222 3355689999874   579999  665 55

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.76  E-value=3.3e-17  Score=159.02  Aligned_cols=206  Identities=14%  Similarity=0.083  Sum_probs=143.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC-----CcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      ++++|++|.+. .    ..++.+.++..+.  . ....|.+     ..|.+++++++++++....+..  .+++.+  +.
T Consensus        21 ~~~~l~~g~~~-~----~~p~~~~~~~~~~--~-~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~--~~~v~~--~~   88 (398)
T cd00613          21 SMSFLGSGTYK-H----NPPAVIKRNILEN--E-FYTAYTPYQPEISQGRLQALFELQTMLCELTGMD--VANASL--QD   88 (398)
T ss_pred             CcccccccccC-C----cCcHHHHHHhccc--c-CcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC--ccceec--cC
Confidence            45899999872 2    1234444444443  1 1245666     6899999999999987766543  346655  56


Q ss_pred             chhHHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHhhCC----CCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEE
Q 017967          159 SGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIFNDAR----VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~~--gd~Vlv~~P~y~~~~~~~~~~G----~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (363)
                      +|+.+.+.+. +.....+  ||.|++++|.|+.+...+...|    ++++.+++.  +++.+|++.+++.+.   +++++
T Consensus        89 ~g~~~~~~~~-~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~t~~  162 (398)
T cd00613          89 EATAAAEAAG-LAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSD--EGGTVDLEALKEEVS---EEVAA  162 (398)
T ss_pred             chHHHHHHHH-HHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccC--CCCCcCHHHHHHhcC---CCeEE
Confidence            4443333332 2233445  9999999999999988887766    899888873  345789999999886   34667


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc---
Q 017967          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY---  309 (363)
Q Consensus       233 ~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~---  309 (363)
                      +++++|+ |||.+.  +.+++|.++|+++|+++|+|+++...... .     ..    ...+..+++.|++|.+ +|   
T Consensus       163 viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~-~-----~~----~~~~~d~~~~s~~K~~-~p~g~  228 (398)
T cd00613         163 LMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGL-K-----PP----GEYGADIVVGNLQKTG-VPHGG  228 (398)
T ss_pred             EEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEeccccccCC-C-----Ch----HHcCCCEEEeeccccC-CCCCC
Confidence            7778875 999983  45689999999999999999986432211 0     00    1124568899999998 56   


Q ss_pred             -cccceEEEEeeCChh
Q 017967          310 -AERIGAMNVVCSSSD  324 (363)
Q Consensus       310 -G~RvG~i~~v~~~~~  324 (363)
                       |+|+||+  +.+ ++
T Consensus       229 Ggp~~g~l--~~~-~~  241 (398)
T cd00613         229 GGPGAGFF--AVK-KE  241 (398)
T ss_pred             CCCceeEE--EEh-hh
Confidence             8999999  554 44

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.76  E-value=4.3e-17  Score=158.43  Aligned_cols=203  Identities=13%  Similarity=0.008  Sum_probs=141.1

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g  177 (363)
                      |+..+++.+.+++....     .+| ...+..++++.+.+.+....+.. ..+.+++  +.+|+++++.+  +...+.+|
T Consensus        16 GP~~~~~~V~~a~~~~~-----~~~-~~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~--~~~gt~a~~~a--~~~~~~~G   84 (401)
T PLN02409         16 GPVNIPERVLRAMNRPN-----EDH-RSPAFPALTKELLEDVKYIFKTK-SGTPFIF--PTTGTGAWESA--LTNTLSPG   84 (401)
T ss_pred             CCCCCCHHHHHHhcCCC-----CCC-CCHHHHHHHHHHHHHHHHHhCCC-CCCEEEE--eCCcHHHHHHH--HHhcCCCC
Confidence            55667888888864422     223 23456667766666655544432 1234555  78889998777  45557899


Q ss_pred             CEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC-CCcEEEEEcCCCCCCCCCCCHHHHHHH
Q 017967          178 AKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPTGIDPTPEQWEKI  254 (363)
Q Consensus       178 d~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~~p~NPTG~~~s~~~~~~i  254 (363)
                      |+|++++++|...  ...++..|++++.++.+  .+.++|++.+++.+++.+ ++++++++++++||||.+++.+++.++
T Consensus        85 d~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~--~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l  162 (401)
T PLN02409         85 DKVVSFRIGQFSLLWIDQMQRLNFDVDVVESP--WGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKL  162 (401)
T ss_pred             CEEEEeCCCchhHHHHHHHHHcCCceEEEECC--CCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHH
Confidence            9999999988655  46778899999999974  345689999999998522 246788889999999999998888888


Q ss_pred             HHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHH
Q 017967          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (363)
Q Consensus       255 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~  328 (363)
                      ++ |+++|+++|+|+++.- ..-+     ..    .+...-.+++.|.+|.++.| .++||+  +.+ ++.+++
T Consensus       163 ~~-~~~~g~~~vvD~v~s~-g~~~-----id----~~~~~~D~~~~s~~K~l~~P-~G~G~l--~~~-~~~~~~  221 (401)
T PLN02409        163 LD-CAQHPALLLVDGVSSI-GALD-----FR----MDEWGVDVALTGSQKALSLP-TGLGIV--CAS-PKALEA  221 (401)
T ss_pred             Hh-hhccCcEEEEEccccc-CCcc-----cc----ccccCccEEEEcCccccCcC-CCccee--EEC-HHHHHH
Confidence            87 9999999999999652 2110     01    11112236667779999754 379999  665 554333

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.76  E-value=4.9e-17  Score=158.16  Aligned_cols=205  Identities=15%  Similarity=0.048  Sum_probs=144.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCC---CC----CCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKE---YL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~---Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +++-|..|..      ..+++.+.++..+...... +..   +.    ...+..++|+.+++++...     ++++|++ 
T Consensus        18 ~~~yld~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~-----~~~~v~~-   85 (403)
T TIGR01979        18 PLVYLDSAAT------SQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAA-----SDEEIVF-   85 (403)
T ss_pred             ceEEEeCccc------cCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcC-----CCCeEEE-
Confidence            4677776653      3456777777766553211 000   10    0124668999999987442     2468888 


Q ss_pred             eccchhHHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~--~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                       |.|+++++.++...+.  .+.+||.|+++++.|+.    +...++..|++++.++.+  .++.+|++.+++.+.   ++
T Consensus        86 -~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~i~---~~  159 (403)
T TIGR01979        86 -TRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD--DDGTLDLDDLEKLLT---EK  159 (403)
T ss_pred             -eCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC--CCCCCCHHHHHHHhc---cC
Confidence             9999999988854332  24689999999998765    345556789999999984  456789999999886   35


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ++++++++++||||..++.   ++|.++|+++|+++|+|++|......      ..+    ......+++.|++|.+|.+
T Consensus       160 ~~lv~~~~~~~~tG~~~~~---~~i~~~~~~~~~~~ivD~a~~~g~~~------~~~----~~~~~d~~~~s~~K~~gp~  226 (403)
T TIGR01979       160 TKLVAITHVSNVLGTVNPV---EEIAKLAHQVGAKVLVDGAQAVPHMP------VDV----QALDCDFYVFSGHKMYGPT  226 (403)
T ss_pred             CeEEEEEcccccccccCCH---HHHHHHHHHcCCEEEEEchhhcCccc------cCc----cccCCCEEEEecccccCCC
Confidence            7788889999999999985   56777799999999999998643211      011    1123458899999998866


Q ss_pred             cccceEEEEeeCChh
Q 017967          310 AERIGAMNVVCSSSD  324 (363)
Q Consensus       310 G~RvG~i~~v~~~~~  324 (363)
                      |  +|++  +.. ++
T Consensus       227 G--~g~l--~~~-~~  236 (403)
T TIGR01979       227 G--IGVL--YGK-EE  236 (403)
T ss_pred             C--ceEE--EEc-hH
Confidence            6  7988  555 54

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.76  E-value=5.2e-17  Score=156.28  Aligned_cols=199  Identities=15%  Similarity=0.063  Sum_probs=139.9

Q ss_pred             CCCCCCccccHHHHHHHHHHHccCC-C-----CCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHH
Q 017967           94 RTEELQPYVLDVVKKAENLMLERGE-N-----KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (363)
Q Consensus        94 ~~~~~~~~~~~~v~~a~~~~~~~~~-~-----~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (363)
                      .|..+..++++.+.++..+.+.... +     +.+.+  ..+..++|+.+++++...     +++++++  |.|+++++.
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~--~~g~t~a~~   75 (373)
T cd06453           3 LDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAP-----SPDEIIF--TRNTTEAIN   75 (373)
T ss_pred             ccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-----CCCeEEE--eCCHHHHHH
Confidence            3445556677788888766652210 0     01101  233567889999887432     2468877  999999999


Q ss_pred             HHHHHHHHhC---CCCEEEEcCCCCcch----HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCC
Q 017967          166 LAAALIERYF---PGAKVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (363)
Q Consensus       166 l~~~l~~~~~---~gd~Vlv~~P~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p  238 (363)
                      ++.  ..+..   +||+|++++++|+..    ...++..|++++.++++  +++.+|++.+++.+.+   ++.+++++++
T Consensus        76 ~~~--~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~---~~~~v~~~~~  148 (373)
T cd06453          76 LVA--YGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD--DDGQLDLEALEKLLTE---RTKLVAVTHV  148 (373)
T ss_pred             HHH--HHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC--CCCCcCHHHHHHHhcC---CceEEEEeCc
Confidence            884  34444   899999999999874    33455789999999984  4577999999999873   5668888999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEE
Q 017967          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (363)
Q Consensus       239 ~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~  318 (363)
                      +||||.+.+.   ++|+++|+++|+++++|++|......      ..+.   +. ...+++.|+.|.++.  .++||+  
T Consensus       149 ~~~tG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~------~~~~---~~-~~d~~~~s~~K~~~~--~g~g~~--  211 (373)
T cd06453         149 SNVLGTINPV---KEIGEIAHEAGVPVLVDGAQSAGHMP------VDVQ---DL-GCDFLAFSGHKMLGP--TGIGVL--  211 (373)
T ss_pred             ccccCCcCCH---HHHHHHHHHcCCEEEEEhhhhcCcee------eecc---cc-CCCEEEeccccccCC--CCcEEE--
Confidence            9999999885   56777799999999999997643211      0111   11 224566788999984  668998  


Q ss_pred             eeCChh
Q 017967          319 VCSSSD  324 (363)
Q Consensus       319 v~~~~~  324 (363)
                      +++ ++
T Consensus       212 ~~~-~~  216 (373)
T cd06453         212 YGK-EE  216 (373)
T ss_pred             EEc-hH
Confidence            665 55

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK07179 hypothetical protein; Provisional

Probab=99.76  E-value=1.8e-16  Score=154.50  Aligned_cols=216  Identities=15%  Similarity=0.063  Sum_probs=144.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      ..++++...|.+...+|.+.+.+.+++.+.....  ....+.......+|.+.+|+++..        +.+++  +.||+
T Consensus        55 ~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--------~~~~~--~~sG~  124 (407)
T PRK07179         55 DAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGF--------ESCLL--CQSGW  124 (407)
T ss_pred             cEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCC--------CcEEE--ECCHH
Confidence            6789988888766555544445544443321111  111122223567888999999632        35555  89999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +|..++  +..+..+||.|++..+.+......++..|++++.++       ..|++.+++.+++  .++.++++++++||
T Consensus       125 ~An~~~--l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~--~~~~lV~v~~v~n~  193 (407)
T PRK07179        125 AANVGL--LQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFR-------HNDVDHLRRQIER--HGPGIIVVDSVYST  193 (407)
T ss_pred             HHHHHH--HHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEec-------CCCHHHHHHHHHh--cCCeEEEECCCCCC
Confidence            998887  444566899999999998888777778888776654       2589999999874  23567888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCe-EEEEEcCccccccccccceEEEEee
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~-vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      ||.+++.   ++|.++|+++|+++|+||+|.....+. .. ...+..+ +..+. .+++.|+||.+|   .|+||+  ++
T Consensus       194 tG~i~pl---~~I~~l~~~~~~~livDea~~~g~~g~-~g-~g~~~~~-~~~~~vdi~~~S~sK~~g---~~~G~l--~~  262 (407)
T PRK07179        194 TGTIAPL---ADIVDIAEEFGCVLVVDESHSLGTHGP-QG-AGLVAEL-GLTSRVHFITASLAKAFA---GRAGII--TC  262 (407)
T ss_pred             CCccccH---HHHHHHHHHcCCEEEEECcccccCcCC-CC-CchHHhc-CCCCCCCEEEeechHhhh---ccCeEE--Ee
Confidence            9999985   567777999999999999987433321 10 1111111 21123 488999999986   379999  66


Q ss_pred             CChhHHHHHHHHHHhh
Q 017967          321 SSSDLAARVKSQLKRL  336 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~  336 (363)
                      + ++    +++.+...
T Consensus       263 ~-~~----~~~~~~~~  273 (407)
T PRK07179        263 P-RE----LAEYVPFV  273 (407)
T ss_pred             C-HH----HHHHHHHh
Confidence            5 55    44444433

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.75  E-value=5.2e-17  Score=159.10  Aligned_cols=205  Identities=16%  Similarity=0.055  Sum_probs=143.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-C----CCCCC---CcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-N----KEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~----~~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+.|..+..      ..+++.+.+++.+...... .    ..|..   .....++|+++++++...     ++++|++ 
T Consensus        32 ~~iyLd~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-----~~~~v~~-   99 (424)
T PLN02855         32 KLVYLDNAAT------SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINAS-----TSREIVF-   99 (424)
T ss_pred             CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCC-----CCCEEEE-
Confidence            4677776553      3456777777766553210 0    11111   122468899999997542     2478988 


Q ss_pred             eccchhHHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~--~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                       |.|+|+++.++...+.  .+.+||+|+++.+.|+.    +...++..|++++.++.+  .++.+|++.+++.+++   +
T Consensus       100 -t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~--~~~~~~~~~l~~~i~~---~  173 (424)
T PLN02855        100 -TRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT--PDEVLDVEQLKELLSE---K  173 (424)
T ss_pred             -eCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHHhcc---C
Confidence             9999999998854332  35689999999997764    455667889999999984  2456899999999873   5


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ++++++++++||||..++.+   +|+++|+++|+++|+|++|..-. ..     ..+    ......+++.|++|.+|.+
T Consensus       174 t~lv~i~~~~n~tG~~~~~~---~I~~l~~~~g~~vivD~a~~~g~-~~-----~~~----~~~~~d~~~~s~~K~~gp~  240 (424)
T PLN02855        174 TKLVATHHVSNVLGSILPVE---DIVHWAHAVGAKVLVDACQSVPH-MP-----VDV----QTLGADFLVASSHKMCGPT  240 (424)
T ss_pred             ceEEEEeCccccccccCCHH---HHHHHHHHcCCEEEEEhhhhcCC-cC-----CCc----hhcCCCEEEeecccccCCC
Confidence            67888899999999999865   56777999999999999974211 10     111    1112346799999988755


Q ss_pred             cccceEEEEeeCChh
Q 017967          310 AERIGAMNVVCSSSD  324 (363)
Q Consensus       310 G~RvG~i~~v~~~~~  324 (363)
                      |  +||+  +.. ++
T Consensus       241 G--~G~l--~~~-~~  250 (424)
T PLN02855        241 G--IGFL--WGK-SD  250 (424)
T ss_pred             c--cEEE--EEc-hh
Confidence            5  8999  655 44

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.75  E-value=1.4e-16  Score=153.05  Aligned_cols=198  Identities=17%  Similarity=0.067  Sum_probs=136.0

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g  177 (363)
                      ++..+.+.+++++.... ......|.  .-..++|+.+++++...    -+++.|++  +.+|+.+++.+  +..++.+|
T Consensus        12 gP~~~~~~~~~a~~~~~-~~~~~~~~--~~~~~~~~~l~~l~~~~----~~~~~i~~--~~~gt~~l~~~--~~~l~~~~   80 (368)
T PRK13479         12 GPLTTSRTVREAMLRDW-GSWDDDFN--ALTASVRAKLVAIATGE----EGYTCVPL--QGSGTFSVEAA--IGSLVPRD   80 (368)
T ss_pred             CCCCCCHHHHHHhCCCC-CCCChHHH--HHHHHHHHHHHHHhCCC----CCceEEEE--cCCcHHHHHHH--HHhccCCC
Confidence            44556677777754322 11111122  24678888888886532    11244656  99999999888  55566799


Q ss_pred             CEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHH
Q 017967          178 AKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (363)
Q Consensus       178 d~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~  255 (363)
                      |.|+++.++|.+.  ...++..|++++.+++.  .++.+|++.+++.+++.+ +.+++.+++++||||...+.   ++|.
T Consensus        81 ~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~~~tG~~~~~---~~i~  154 (368)
T PRK13479         81 GKVLVPDNGAYGARIAQIAEYLGIAHVVLDTG--EDEPPDAAEVEAALAADP-RITHVALVHCETTTGILNPL---DEIA  154 (368)
T ss_pred             CeEEEEeCCchHHHHHHHHHHcCCcEEEEECC--CCCCCCHHHHHHHHHhCC-CCcEEEEEcccCccccccCH---HHHH
Confidence            9999999888766  36778999999999983  356799999999987533 34567789999999999875   5667


Q ss_pred             HHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc-ccccccceEEEEeeCChhHHH
Q 017967          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAA  327 (363)
Q Consensus       256 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~l~G~RvG~i~~v~~~~~~~~  327 (363)
                      ++|+++++++|+| +|+.+....     ..+   .+.+.+ +++.|++|.+ |.+|  +||+  +++ ++.++
T Consensus       155 ~l~~~~~~~livD-a~~~~g~~~-----~~~---~~~~~d-~~v~s~~K~l~g~~G--~G~l--~~~-~~~~~  212 (368)
T PRK13479        155 AVAKRHGKRLIVD-AMSSFGAIP-----IDI---AELGID-ALISSANKCIEGVPG--FGFV--IAR-RSELE  212 (368)
T ss_pred             HHHHHcCCEEEEE-cccccCCcc-----ccc---cccCce-EEEecCccccccCCC--ceEE--EEC-HHHHH
Confidence            7799999999999 556654321     111   112223 6667999965 6677  5999  665 55333

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.75  E-value=1.5e-16  Score=153.12  Aligned_cols=191  Identities=14%  Similarity=0.073  Sum_probs=131.8

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCEE
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~V  180 (363)
                      ..+...+++.+.+..+.  -++...-..++.+.+++++    +    .+++++  |+||++|+.++.  ..+ +.|||+|
T Consensus         9 ~~~~e~~a~~~~~~~~~--~~~~g~~~~~~e~~la~~~----g----~~~~v~--~~sgt~aL~~~l--~al~~~pGd~V   74 (376)
T TIGR02379         9 VTGQELEYIAEAISEGK--LSGDGPFSRRCETWLENRT----G----TKKALL--TPSCTAALEMAA--LLLDIQPGDEV   74 (376)
T ss_pred             CCHHHHHHHHHHHHcCC--ccCCcHHHHHHHHHHHHHh----C----CCeEEE--eCCHHHHHHHHH--HHcCCCCcCEE
Confidence            34455666666554432  1211111244444555542    2    367877  999999998873  333 5799999


Q ss_pred             EEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHh
Q 017967          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (363)
Q Consensus       181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~  260 (363)
                      ++++|+|..+...+...|++++.++++ ++++.+|++.++++++.   ++++++   |+||||...+   +.+|.++|++
T Consensus        75 iv~~~t~~~~~~~~~~~G~~~v~vd~d-~~~~~~d~~~le~~i~~---~tk~Ii---p~~~~G~~~d---~~~I~~la~~  144 (376)
T TIGR02379        75 IMPSYTFVSTANAFVLRGAKIVFVDIR-PDTMNIDETLIESAITH---RTKAIV---PVHYAGVACD---MDTIMALANK  144 (376)
T ss_pred             EECCCCcHHHHHHHHHcCCEEEEEecC-CCcCCCCHHHHHHhcCc---CceEEE---EeCCCCCccC---HHHHHHHHHH
Confidence            999999999999999999999999985 34578999999998873   455655   6789998876   4577778999


Q ss_pred             cCCeEEEecCCCCCc-CCCCCCchhHHHHHHhcCCeEEEEEcC----ccccccccccceEEEEeeCChhHHHHHHH
Q 017967          261 KNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSY----SKNLGLYAERIGAMNVVCSSSDLAARVKS  331 (363)
Q Consensus       261 ~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~vi~~~S~----SK~~~l~G~RvG~i~~v~~~~~~~~~~~~  331 (363)
                      +|++||+|+++.... +++.     ..       .....+.+|    +|.+. +|.|.|++  ++++++..+++..
T Consensus       145 ~~i~vIeDaa~~~g~~~~~~-----~~-------g~~~~~~~fSf~~~K~l~-~g~~gG~v--~~~~~~~~~~~~~  205 (376)
T TIGR02379       145 HQLFVIEDAAQGVMSTYKGR-----AL-------GSIGHLGTFSFHETKNYT-SGGEGGAL--LINDQAFIERAEI  205 (376)
T ss_pred             CCCEEEEECccccCCccCCc-----cc-------CCCCCEEEEeCCCCCcCc-ccCCceEE--EECCHHHHHHHHH
Confidence            999999999987654 3321     11       111123333    48896 78889999  8888885555443

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.75  E-value=2.1e-16  Score=152.93  Aligned_cols=211  Identities=13%  Similarity=-0.015  Sum_probs=149.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-------CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-------NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      .+|||.--+-    + .++++.+.+++.+......       ...+.......++++.+|+++..        +++.+  
T Consensus        19 ~~~~~~~~~~----~-~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~--------~~~~~--   83 (387)
T PRK09331         19 EFINLDPIQR----G-GILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM--------DEARV--   83 (387)
T ss_pred             cccccChhhc----C-CCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC--------CcEEE--
Confidence            5777764331    1 2356777777776652211       11222234578999999999632        35666  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC----CCCcEE
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFI  232 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~~  232 (363)
                      ++|+++++.++  +..++.+||+|+++.++|......++..|++++.++...++++.+|++.+++.+++.    .+++++
T Consensus        84 ~~g~t~a~~~a--l~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~l  161 (387)
T PRK09331         84 THGAREGKFAV--MHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPAL  161 (387)
T ss_pred             eCCHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEE
Confidence            89999998877  555578999999999998777777889999999998732346789999999998742    124678


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccccc
Q 017967          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (363)
Q Consensus       233 ~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~R  312 (363)
                      +++++|+||||...+   +++|+++|+++|+++++|++|..-...   .   ....   . ...+++.|++|.++ .+.|
T Consensus       162 V~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~g~~~---~---~~~~---~-g~D~~~~s~~K~l~-~~~~  227 (387)
T PRK09331        162 ALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTVGRMP---V---DGKK---L-GADFIVGSGHKSMA-ASAP  227 (387)
T ss_pred             EEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCcccCCcC---C---CHHH---c-CCCEEEeeCccccc-CCCC
Confidence            888999999997754   667778899999999999998642211   0   1111   1 23577999999998 5669


Q ss_pred             ceEEEEeeCChhHHHH
Q 017967          313 IGAMNVVCSSSDLAAR  328 (363)
Q Consensus       313 vG~i~~v~~~~~~~~~  328 (363)
                      +||+  +++ ++.+++
T Consensus       228 ~G~l--~~~-~~~i~~  240 (387)
T PRK09331        228 SGVL--ATT-EEYADK  240 (387)
T ss_pred             EEEE--EEC-HHHHhh
Confidence            9999  654 663333

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.74  E-value=2.9e-16  Score=150.57  Aligned_cols=198  Identities=18%  Similarity=0.105  Sum_probs=141.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+||.+ |.. +.-|-.++++.+.+++.+..+.     |.   +..++++++.+++...++.    +++++  |+|+|.|
T Consensus         9 ~~ina~-g~~-t~~g~s~~~~~v~~a~~~~~~~-----~~---~~~~~~~~~~~~~a~~~g~----~~~~~--~~g~t~a   72 (363)
T TIGR01437         9 KVINAS-GKM-TILGVSTVSDEVADAQKRGAQN-----YF---EIKELVNKTGEYIANLLGV----EDAVI--VSSASAG   72 (363)
T ss_pred             eEEECC-cEe-ecCCCCCCCHHHHHHHHHHHhc-----CC---CHHHHHHHHHHHHHHhhCC----CeEEE--EcCHHHH
Confidence            566655 443 4456667889999998877532     32   3456666666665544432    46766  9999999


Q ss_pred             HHHHHHHHHHhCCCC---------------EEEEcCCCCcch----HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHH
Q 017967          164 LRLAAALIERYFPGA---------------KVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (363)
Q Consensus       164 l~l~~~l~~~~~~gd---------------~Vlv~~P~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (363)
                      +.++  +..++.+||               .|+++.|.|..|    ...+...|++++.++.    ++.+|++.++++++
T Consensus        73 l~~a--l~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~----~~~~d~~~le~ai~  146 (363)
T TIGR01437        73 IAQS--VAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY----ANECSAEQLEAAIT  146 (363)
T ss_pred             HHHH--HHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC----CCCCCHHHHHHhcC
Confidence            9988  555577887               999999888766    4677789999999876    34699999999997


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcc
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  304 (363)
                      +  +...++++++||||+|.+.+.+   +|+++|+++|+++|+|++|..   .     ...   +...+ ..+++.|++|
T Consensus       147 ~--~t~ai~~v~~~~~~~g~~~~~~---~i~~~a~~~gi~vivD~a~~~---~-----~~~---~~~~g-~D~~~~S~~K  209 (363)
T TIGR01437       147 E--KTAAILYIKSHHCVQKSMLSVE---DAAQVAQEHNLPLIVDAAAEE---D-----LQK---YYRLG-ADLVIYSGAK  209 (363)
T ss_pred             h--hceEEEEEecCCCCcCCcCCHH---HHHHHHHHcCCeEEEECCCCC---c-----hHH---HHHcC-CCEEEEeCCc
Confidence            4  3333555688999999998865   567789999999999999861   1     111   11222 3567799999


Q ss_pred             ccccccccceEEEEeeCChhH
Q 017967          305 NLGLYAERIGAMNVVCSSSDL  325 (363)
Q Consensus       305 ~~~l~G~RvG~i~~v~~~~~~  325 (363)
                      .+  +|+|.|++  +.+ ++.
T Consensus       210 ~l--~gp~~G~l--~~~-~~~  225 (363)
T TIGR01437       210 AI--EGPTSGLV--LGK-KKY  225 (363)
T ss_pred             cc--CCCceEEE--EEc-HHH
Confidence            76  58899998  654 553

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.74  E-value=6.2e-17  Score=150.87  Aligned_cols=169  Identities=16%  Similarity=0.057  Sum_probs=127.0

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEE
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (363)
                      |..-..++++.+|+++..       ++-+++  ++|+++++..+  +...+.|||+|+++.|+|......+...|++++.
T Consensus        57 ~~g~i~~~~~~~A~~~ga-------~~~~~~--~~Gst~a~~~~--l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~  125 (294)
T cd00615          57 PTGPIKEAQELAARAFGA-------KHTFFL--VNGTSSSNKAV--ILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVY  125 (294)
T ss_pred             CChHHHHHHHHHHHHhCC-------CCEEEE--cCcHHHHHHHH--HHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEE
Confidence            444478899999998643       234444  89999998777  5566789999999999999999899999999988


Q ss_pred             EecccCCC----CCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCC-cCCC
Q 017967          204 YRYYDPKT----VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF-ASGS  278 (363)
Q Consensus       204 v~~~~~~~----~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~-~~~~  278 (363)
                      ++.....+    .++|++.+++++++.+ +++++++++| ||||.+++   +++|+++|+++|+++|+||+|... .+.+
T Consensus       126 v~~~~~~~~~~~~~i~~~~l~~~l~~~~-~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~  200 (294)
T cd00615         126 LKPERNPYYGIAGGIPPETFKKALIEHP-DAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHP  200 (294)
T ss_pred             ecCccCcccCcCCCCCHHHHHHHHHhCC-CceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCc
Confidence            87643222    3789999999997533 4667777888 79999986   567888899999999999998753 3322


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      .   . +..  .......+++.|++|.+  +|+|.|++
T Consensus       201 ~---~-~~~--~~~~~~div~~S~hK~l--~g~~~~~~  230 (294)
T cd00615         201 I---L-PSS--AAMAGADIVVQSTHKTL--PALTQGSM  230 (294)
T ss_pred             c---c-Ccc--hhhcCCcEEEEchhccc--chHhHHHH
Confidence            1   0 111  11235679999999975  68888776

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK05939 hypothetical protein; Provisional

Probab=99.74  E-value=3.7e-16  Score=151.22  Aligned_cols=151  Identities=16%  Similarity=0.145  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeEEEe
Q 017967          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYR  205 (363)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~  205 (363)
                      .+|.+++|++....       ..+ +  +.+|++|+..+  +..++.+||+|+++++.|+.+..   .++..|++++.++
T Consensus        50 ~~lE~~la~leg~~-------~~v-~--~ssG~~Ai~~~--l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~  117 (397)
T PRK05939         50 AALEAKITKMEGGV-------GTV-C--FATGMAAIAAV--FLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVD  117 (397)
T ss_pred             HHHHHHHHHHhCCC-------eEE-E--eCCHHHHHHHH--HHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEEC
Confidence            48999999985332       333 3  57779998877  55567899999999999976543   4567899998887


Q ss_pred             cccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCC-cCCCCCCchh
Q 017967          206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF-ASGSLDNDAS  284 (363)
Q Consensus       206 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~  284 (363)
                      .       .|++.+++.++   ++++++++++|+||||.+   .++++|+++|+++|+++|+|++|... .++.      
T Consensus       118 ~-------~d~e~l~~~l~---~~tklV~vesp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~~~~~~~------  178 (397)
T PRK05939        118 A-------TDVQNVAAAIR---PNTRMVFVETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTSPWLFRP------  178 (397)
T ss_pred             C-------CCHHHHHHhCC---CCCeEEEEECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCcccccccCc------
Confidence            5       37899999886   356788889999999987   57888999999999999999998532 2211      


Q ss_pred             HHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       285 ~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                            ......+++.|+||.++..|.++|++
T Consensus       179 ------~~~gaDivv~S~sK~~~g~g~~igg~  204 (397)
T PRK05939        179 ------KDVGASLVINSLSKYIAGHGNALGGA  204 (397)
T ss_pred             ------cccCCEEEEecCeecccCCCCeEEEE
Confidence                  01135689999999999899999998

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.74  E-value=1.9e-16  Score=152.39  Aligned_cols=196  Identities=14%  Similarity=0.104  Sum_probs=141.5

Q ss_pred             CCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH---
Q 017967          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---  194 (363)
Q Consensus       120 ~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~---  194 (363)
                      +.|..  ..+...|++++|++..+        +++++  +.||++|+..+  +..++.+||+|++++|.|.++...+   
T Consensus        53 ~~Y~r~~npt~~~Le~~iA~le~~--------~~~~~--~~sG~~Ai~~~--l~all~~GD~Vvv~~~~Y~~t~~l~~~~  120 (394)
T PRK09028         53 MFYGRRGTPTHFAFQAAIVELEGG--------AGTAL--YPSGAAAISNA--LLSFLKAGDHLLMVDSCYEPTRDLCDKI  120 (394)
T ss_pred             ceecCCCCchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEECCCcHHHHHHHHHh
Confidence            44655  44567999999998522        35666  99999998887  5566889999999999998887644   


Q ss_pred             -hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC
Q 017967          195 -NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (363)
Q Consensus       195 -~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~  273 (363)
                       ...|+++..++.       .+.+.++++++   ++++++++++|+||||.+   .++++|+++|+++|+++|+|++|..
T Consensus       121 l~~~Gi~v~~v~~-------~~~e~l~~~l~---~~TklV~lespsNPtg~v---~dl~~I~~la~~~g~~lvvD~t~a~  187 (394)
T PRK09028        121 LKGFGIETTYYDP-------MIGEGIRELIR---PNTKVLFLESPGSITMEV---QDVPTLSRIAHEHDIVVMLDNTWAS  187 (394)
T ss_pred             hhhcceEEEEECC-------CCHHHHHHhcC---cCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCccc
Confidence             467888776653       14577888776   357788899999999765   6788999999999999999999975


Q ss_pred             CcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHH
Q 017967          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQ  352 (363)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~  352 (363)
                      ...-.      +.    + ..-.+++.|.+|.++ -.+...|++   +.+++.    .+.+.........+.+++...++
T Consensus       188 p~~~~------Pl----~-~GaDivv~S~tK~l~Gh~d~~~G~~---~~~~~~----~~~l~~~~~~~G~~~~p~~a~l~  249 (394)
T PRK09028        188 PINSR------PF----E-MGVDISIQAATKYIVGHSDVMLGTA---TANEKH----WDQLREHSYLMGQCTSPDDVYLA  249 (394)
T ss_pred             cccCC------cc----c-cCceEEEEeCCeEecCCCCEEEEEE---ECCHHH----HHHHHHHHHhcCCCCCHHHHHHH
Confidence            43211      11    1 134588999999994 345666765   445653    33344333445668888888888


Q ss_pred             hccccc
Q 017967          353 LSSMNG  358 (363)
Q Consensus       353 ~~~l~~  358 (363)
                      .+.|+.
T Consensus       250 ~rgl~T  255 (394)
T PRK09028        250 MRGLRT  255 (394)
T ss_pred             HcccCc
Confidence            776653

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.74  E-value=2.1e-16  Score=151.19  Aligned_cols=196  Identities=15%  Similarity=0.084  Sum_probs=134.7

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCCCcc--hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLPIEG--LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G--~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~  175 (363)
                      +++.+++.+.+++.+...   .+.| +...  ..++++.+++++...     .++.+++  +.||++++.++  +..++.
T Consensus         6 ~~~~~~~~v~~a~~~~~~---~~~~-~~~~~~~~~~~~~la~~~g~~-----~~~~~~~--~~~~t~al~~~--~~~~~~   72 (356)
T cd06451           6 GPSNVPPRVLKAMNRPML---GHRS-PEFLALMDEILEGLRYVFQTE-----NGLTFLL--SGSGTGAMEAA--LSNLLE   72 (356)
T ss_pred             CCcCCCHHHHHHhCCCcc---CCCC-HHHHHHHHHHHHHHHHHhcCC-----CCCEEEE--ecCcHHHHHHH--HHHhCC
Confidence            445667888887643221   1223 2222  457778888886431     1234556  88889998888  445567


Q ss_pred             CCCEEEEcCCCCcc--hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          176 PGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      +||.|+++.++|..  +...++..|++++.++.+  .++.+|++.+++.+++  .++.++++++++||||..++.+   +
T Consensus        73 ~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~~~~---~  145 (356)
T cd06451          73 PGDKVLVGVNGVFGDRWADMAERYGADVDVVEKP--WGEAVSPEEIAEALEQ--HDIKAVTLTHNETSTGVLNPLE---G  145 (356)
T ss_pred             CCCEEEEecCCchhHHHHHHHHHhCCCeEEeecC--CCCCCCHHHHHHHHhc--cCCCEEEEeccCCCcccccCHH---H
Confidence            99999999987765  466778899999999984  3468999999999973  2456777789999999998755   5


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHH
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA  327 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~  327 (363)
                      |.++|+++|+++++|+++. +....     ...   ...+.+ +++.|++|.++. +.++||+  +.+ ++.++
T Consensus       146 i~~~a~~~~~~li~D~~~~-~g~~~-----~~~---~~~~~d-~~~~s~~K~l~~-p~g~G~l--~~~-~~~~~  205 (356)
T cd06451         146 IGALAKKHDALLIVDAVSS-LGGEP-----FRM---DEWGVD-VAYTGSQKALGA-PPGLGPI--AFS-ERALE  205 (356)
T ss_pred             HHHHHHhcCCEEEEeeehh-ccCcc-----ccc---cccCcc-EEEecCchhccC-CCCccee--EEC-HHHHH
Confidence            6677899999999999864 22110     111   112223 556788999984 4468999  665 55333

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.73  E-value=3.5e-16  Score=149.24  Aligned_cols=199  Identities=17%  Similarity=0.123  Sum_probs=135.2

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g  177 (363)
                      ++..+.+.+++++...... ....|.  .-..++|+.+++++....    +...|++  +.||++++..+  +..++.+|
T Consensus         6 ~p~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~la~~~~~~~----~~~~i~~--~~~gt~~l~~~--~~~~~~~~   74 (355)
T TIGR03301         6 GPLSTSATVRDAMLVDWCH-WDSEFN--DVTDQVRDRLLALAGGDD----NHTCVLL--QGSGTFAVEAT--IGSLVPRD   74 (355)
T ss_pred             CCCCCCHHHHHHhhhhccC-CCHHHH--HHHHHHHHHHHHHhcCCC----CCcEEEE--eCCcHHHHHHH--HHhccCCC
Confidence            4455778888887662211 111232  335678888888864431    1124555  89999998888  44556678


Q ss_pred             CEEEEcCCC-Ccc-hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHH
Q 017967          178 AKVLISSPT-WGN-HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (363)
Q Consensus       178 d~Vlv~~P~-y~~-~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~  255 (363)
                      |+|++..+. |+. +...++..|.+++.++.+  +++.+|++.+++.+++++ +.+++++++++||||...+   +++|+
T Consensus        75 ~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~--~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~~~~G~~~~---~~~i~  148 (355)
T TIGR03301        75 GKLLVLINGAYGERLAKICEYLGIPHTDLNFS--EYEPPDLNRIEEALAADP-DITHVATVHHETTTGILNP---LEAIA  148 (355)
T ss_pred             CeEEEECCCchhhHHHHHHHHcCCceEEEecC--CCCCCCHHHHHHHHHhCC-CceEEEEEecCCcccchhH---HHHHH
Confidence            887766655 443 456778899999999873  457899999999998643 3556777889999999876   67788


Q ss_pred             HHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc-ccccccceEEEEeeCChhHHHH
Q 017967          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAAR  328 (363)
Q Consensus       256 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~l~G~RvG~i~~v~~~~~~~~~  328 (363)
                      ++|+++++++|+|+++. +...     ...+    ...+..+++.|++|.+ |.+|  +||+  +++ ++.+++
T Consensus       149 ~l~~~~~~~livD~~~s-~g~~-----~~~~----~~~~~d~~~~s~~K~l~~~~G--~g~~--~~~-~~~~~~  207 (355)
T TIGR03301       149 KVARSHGAVLIVDAMSS-FGAI-----PIDI----EELDVDALIASANKCLEGVPG--FGFV--IAR-RDLLEA  207 (355)
T ss_pred             HHHHHcCCEEEEEeccc-cCCc-----ccch----hhcCccEEEecCCcccccCCc--eeEE--EEC-HHHHHH
Confidence            88999999999998643 3211     1122    1224457789999986 5555  6999  665 664443

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.73  E-value=9.1e-17  Score=155.25  Aligned_cols=199  Identities=12%  Similarity=0.067  Sum_probs=139.0

Q ss_pred             cCCCCCCccccHHHHHHHHHHHcc-----CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHH
Q 017967           93 YRTEELQPYVLDVVKKAENLMLER-----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA  167 (363)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~  167 (363)
                      |.|..+.+++++.+.+++.+....     ...+.| +..+...+++++++++.... . .++++|++  |+|+++++.++
T Consensus         2 yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~-~~~~~~~l~~a~~~~~~~~~-~-~~~~~i~~--t~g~teal~~~   76 (382)
T TIGR03403         2 YLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQF-GTATHPAIAEALDKLYKGIN-A-RDLDDIII--TSCATESNNWV   76 (382)
T ss_pred             cccCcCCCCCCHHHHHHHHHHHHhcCcCCccccHH-HHHHHHHHHHHHHHHHHHcC-c-CCCCeEEE--eCCHHHHHHHH
Confidence            345556667778888888776632     111223 24567788888888864332 1 24689988  99999999988


Q ss_pred             HHHHHH---hCC-CCEEEEcCCCCcchHH---HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          168 AALIER---YFP-GAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       168 ~~l~~~---~~~-gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      ...+..   ..+ +++|+++.+.|+.+..   .++..|++++.+|++  +++.+|++.+++.+++   +++++++++|||
T Consensus        77 ~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~--~~g~~d~~~l~~~i~~---~t~lv~~~~~~n  151 (382)
T TIGR03403        77 LKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPIN--EQGTITAEQVREAITE---KTALVSVMWANN  151 (382)
T ss_pred             HHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecC--CCCCCCHHHHHHhccc---CCeEEEEEcccC
Confidence            443211   145 4789999866655544   456789999999984  3467899999998873   467888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      |||..++.+   +|.++|+++|+++++|+++..-... .     .+   .+.+.+ +++.|++|.+|.+|+  |++
T Consensus       152 ~tG~~~~~~---~I~~la~~~g~~~ivD~a~~~g~~~-~-----~~---~~~~~D-~~~~s~~K~~gp~G~--g~l  212 (382)
T TIGR03403       152 ETGMIFPIK---EIGEICKERGVLFHTDAVQAIGKIP-V-----DV---QKAGVD-FLSFSAHKFHGPKGV--GGL  212 (382)
T ss_pred             CCccccCHH---HHHHHHHHcCCEEEEechhhcCCCc-c-----Cc---cccCCC-EEEEcchhhCCCCce--EEE
Confidence            999999865   6677799999999999995522110 0     11   122233 788999999887784  777

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.73  E-value=3.6e-16  Score=150.85  Aligned_cols=190  Identities=18%  Similarity=0.125  Sum_probs=135.8

Q ss_pred             cHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCEEE
Q 017967          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVL  181 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~Vl  181 (363)
                      .+.-.+++.+.+..+. . | ......+|++++|+++..        ++++.  +.|||+|+.++  +..+ +.+||+|+
T Consensus        13 ~~~e~~~~~~~l~~~~-~-~-~g~~~~~le~~la~~~g~--------~~~v~--~~sgt~al~la--l~al~~~~Gd~Vi   77 (379)
T PRK11658         13 GDEELAAVKEVLRSGW-I-T-TGPKNQALEQAFCQLTGN--------QHAIA--VSSATAGMHIT--LMALGIGPGDEVI   77 (379)
T ss_pred             CHHHHHHHHHHHHcCC-c-c-CCHhHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHcCCCCCCEEE
Confidence            3444555555554432 2 2 344678999999999743        34555  89999999988  4444 57999999


Q ss_pred             EcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhc
Q 017967          182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK  261 (363)
Q Consensus       182 v~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~  261 (363)
                      +++|+|..+...+...|++++.++++ .+++.+|++.+++.+++   ++++++   |+||+|...+   +++|.++|+++
T Consensus        78 v~~~~~~~~~~~~~~~G~~~v~vd~~-~~~~~~d~~~l~~~i~~---~tkav~---~~~~~G~~~d---~~~i~~~a~~~  147 (379)
T PRK11658         78 TPSLTWVSTLNMIVLLGATPVMVDVD-RDTLMVTPEAIEAAITP---RTKAII---PVHYAGAPAD---LDAIRAIGERY  147 (379)
T ss_pred             ECCCcHHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHhccc---CCeEEE---EeCCCCCcCC---HHHHHHHHHHc
Confidence            99999999999999999999999985 34577999999998873   455555   5678998765   56677889999


Q ss_pred             CCeEEEecCCC-CCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHH
Q 017967          262 NHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       262 ~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~  330 (363)
                      |+++|+|+++. +..+.+.     .+   ...+.   .+.||++.-.+++.+.|++  ++.+++..+++.
T Consensus       148 gi~vi~D~a~a~g~~~~~~-----~~---g~~g~---~~~Sf~~~K~l~~g~GG~v--~~~~~~~~~~~~  204 (379)
T PRK11658        148 GIPVIEDAAHAVGTYYKGR-----HI---GARGT---AIFSFHAIKNITCAEGGLV--VTDDDELADRLR  204 (379)
T ss_pred             CCeEEEECCCccCCeECCe-----ec---CCCCC---EEEeCCCCCcCcccCceEE--EECCHHHHHHHH
Confidence            99999999986 3333321     11   11122   4566665555567789988  777787555544

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.73  E-value=4.3e-16  Score=152.16  Aligned_cols=157  Identities=18%  Similarity=0.140  Sum_probs=120.7

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHHhhCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~  200 (363)
                      ......|.+.+|++...        +..++  +.+|++|+.++  +..++.+||+|+++.+.|+...    ..++..|++
T Consensus        63 ~p~~~~Le~~lA~leg~--------~~al~--~~sG~~Ai~~a--l~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~  130 (431)
T PRK08248         63 NPTTDVFEKRIAALEGG--------IGALA--VSSGQAAITYS--ILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGIT  130 (431)
T ss_pred             CchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEE
Confidence            44567899999999532        34555  79999998877  5666789999999999886543    445678999


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      ++.++.       .|++.+++++++   +++++++++|+||||.+++.   ++|.++|+++|+++|+|++|..-. .   
T Consensus       131 v~~vd~-------~d~e~l~~ai~~---~tklV~l~sp~NPtG~v~di---~~I~~la~~~gi~vIvD~t~a~~~-~---  193 (431)
T PRK08248        131 VKFVDP-------SDPENFEAAITD---KTKALFAETIGNPKGDVLDI---EAVAAIAHEHGIPLIVDNTFASPY-L---  193 (431)
T ss_pred             EEEECC-------CCHHHHHHhcCC---CCeEEEEECCCCCCCcccCH---HHHHHHHHHcCCEEEEeCCCCccc-c---
Confidence            999875       378999998863   46677778999999999975   467777999999999999976311 1   


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                        ..++    +. ...+++.|++|.+|.+|.++|+++
T Consensus       194 --~~pl----~~-gaDivv~S~tK~lgg~g~~~Gg~v  223 (431)
T PRK08248        194 --LRPI----EH-GADIVVHSATKFIGGHGTSIGGVI  223 (431)
T ss_pred             --CChh----Hc-CCCEEEEcCccccCCCCCceEEEE
Confidence              1111    22 345788999999999999999983

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.72  E-value=8.1e-16  Score=148.04  Aligned_cols=190  Identities=17%  Similarity=0.150  Sum_probs=130.8

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~  199 (363)
                      ......+|++.+|++...       +..+ +  +.+|++++.++   +..+.|||+|+++.|.|++...    .+...|+
T Consensus        48 ~~p~~~~Le~~lA~l~g~-------~~~~-~--~~sG~aai~~~---~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~  114 (377)
T PRK07671         48 GNPTRAALEELIAVLEGG-------HAGF-A--FGSGMAAITAV---MMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGI  114 (377)
T ss_pred             CChHHHHHHHHHHHHhCC-------CceE-E--eCCHHHHHHHH---HHHhCCCCEEEECCCccchHHHHHHHHHhcCCe
Confidence            344578899999999533       2333 3  56677787655   3457899999999999984433    3456799


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++.       .|++.+++++++   +++++++++|+||||.+.   ++++|.++|+++|+++|+|++|....... 
T Consensus       115 ~v~~v~~-------~d~~~l~~ai~~---~tklV~le~P~NPtg~~~---dl~~I~~la~~~g~~lvvD~a~~~~~~~~-  180 (377)
T PRK07671        115 EHTFVDT-------SNLEEVEEAIRP---NTKAIYVETPTNPLLKIT---DIKKISTIAKEKGLLTIVDNTFMTPYWQS-  180 (377)
T ss_pred             EEEEECC-------CCHHHHHHhcCC---CCeEEEEECCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCCccccCC-
Confidence            9888864       378999998863   567888899999999876   46667777999999999999997543321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                           ++    +. ...+++.|+||.++-++ .-.|++  ++.+++    +.+.+...........+++...++.+.|
T Consensus       181 -----p~----~~-g~Divv~S~sK~l~G~~~~~~G~~--v~~~~~----l~~~~~~~~~~~g~~~~~~~a~l~~~~l  242 (377)
T PRK07671        181 -----PI----SL-GADIVLHSATKYLGGHSDVVAGLV--VVNSPE----LAEDLHFVQNSTGGILGPQDSWLLLRGL  242 (377)
T ss_pred             -----hh----hh-CCeEEEecCcccccCCccceeEEE--EeCcHH----HHHHHHHHHHhhcCCCCHHHHHHHHcCc
Confidence                 11    11 23588999999997444 235666  666666    4444444444334456666666655543

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.72  E-value=1.1e-16  Score=152.18  Aligned_cols=201  Identities=12%  Similarity=-0.052  Sum_probs=143.7

Q ss_pred             cHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh--C-----
Q 017967          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--F-----  175 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~--~-----  175 (363)
                      +..+.+.+........ ..|....+..++++++++++.+..+.+..+.++++  |.|||+|+.++...+...  .     
T Consensus        12 ~~~~~~~~~~~~n~~~-~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~--t~ggt~a~~~al~~~~~~~~~~~~~~   88 (345)
T cd06450          12 PALLLEMLTSAKNAID-FTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVF--TSGGSESNLLALLAARDRARKRLKAG   88 (345)
T ss_pred             HHHHHHHHHHhcCCCC-cccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEE--eCChhHHHHHHHHHHHHHhhhhhhcc
Confidence            4455555555554433 44888889999999999998766665434567877  999999998885443221  1     


Q ss_pred             ---C--CCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc---CCCCcEEEEEcCCCCCCCCCCC
Q 017967          176 ---P--GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPTGIDPT  247 (363)
Q Consensus       176 ---~--gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~~~~~~i~~p~NPTG~~~s  247 (363)
                         +  ++.|+++.++|..+...++..|.+++.+++++  ++.+|++.|++.+.+   ...+++++++++|+||||... 
T Consensus        89 ~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~-  165 (345)
T cd06450          89 GGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDE--DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAID-  165 (345)
T ss_pred             cccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCC--CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCC-
Confidence               2  34788899999999888888899999999843  458999999999974   112466778899999999974 


Q ss_pred             HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          248 PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       248 ~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                        ++++|+++|+++|+++++|++|..+.....   ..... ......-..+..|++|.++ ++.|+|++
T Consensus       166 --~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~---~~~~~-~~~~~~~d~~~~s~~K~l~-~p~g~g~~  227 (345)
T cd06450         166 --PLEEIADLAEKYDLWLHVDAAYGGFLLPFP---EPRHL-DFGIERVDSISVDPHKYGL-VPLGCSAV  227 (345)
T ss_pred             --CHHHHHHHHHHhCCeEEEechhhHHHhhCh---hhHHH-hcCccccCEEEEchhHhhC-CCcchHHH
Confidence              567788889999999999999987764311   00100 1111122345679999775 67888987

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.72  E-value=4.4e-16  Score=151.30  Aligned_cols=197  Identities=17%  Similarity=0.124  Sum_probs=140.5

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~  200 (363)
                      .....+|.+.+|++...        ...+.  +++|++|+.++  ++.++.+||+|+++.++|.+....    +...|++
T Consensus        60 nPtv~~lE~~la~leg~--------~~av~--~~SG~aAi~~a--l~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~  127 (432)
T PRK06702         60 NPTLAAFEQKLAELEGG--------VGAVA--TASGQAAIMLA--VLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGID  127 (432)
T ss_pred             CcHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCE
Confidence            34577899999999543        24555  89999999888  556688999999999999866665    6788999


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      +..++.      .+|++.+++++++   +++++++.+|+|||+.+.+   +++|+++|+++|+++|+|++|..-..-   
T Consensus       128 v~~vd~------~~d~~~l~~~I~~---~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~~---  192 (432)
T PRK06702        128 VTFFNP------NLTADEIVALAND---KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYLC---  192 (432)
T ss_pred             EEEECC------CCCHHHHHHhCCc---CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhhC---
Confidence            888854      4789999999973   4567777899999999887   677777899999999999998421110   


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCcc-----ccccccccc-----eEEEEeeCChhHHH-----------------H-HHHH
Q 017967          281 NDASSVRLFATRGMELLVAQSYSK-----NLGLYAERI-----GAMNVVCSSSDLAA-----------------R-VKSQ  332 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK-----~~~l~G~Rv-----G~i~~v~~~~~~~~-----------------~-~~~~  332 (363)
                         .+    ++. .-.|+++|+||     ..+++|.++     +|.  .+++.+.++                 . +.+.
T Consensus       193 ---~p----l~~-GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  262 (432)
T PRK06702        193 ---QA----FEH-GANIIVHSTTKYIDGHASSLGGIVIDGGNFDWT--NGKYPELVEPDPSYHGVSYVQNFGAAAYIVKA  262 (432)
T ss_pred             ---Ch----hhc-CCCEEEEccccccCCCcceeceEEEeCCCcccc--cccccccccccccccccchhhccchhhHHHHH
Confidence               01    122 23488999999     888888887     676  443333211                 0 1111


Q ss_pred             HHhhhccccCCCchHHHHHHhccccc
Q 017967          333 LKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       333 l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      .....+....+.+++...++.+.|+.
T Consensus       263 ~~~~~~~~g~~~sp~~a~l~~rgL~T  288 (432)
T PRK06702        263 RVQLLRDYGNCMSPFNAYISNIGLET  288 (432)
T ss_pred             HHHHHHHccCCCCHHHHHHHHhccCc
Confidence            11222344568889988888877764

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.71  E-value=1.8e-15  Score=147.45  Aligned_cols=241  Identities=14%  Similarity=0.096  Sum_probs=146.5

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHcc-CC-----CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      ...++|+...|.....    .+.+.+++.+.+.. +.     ...|.+.....+|++.+|+++. .      ++.+++  
T Consensus        46 ~~~~~~~s~dylgl~~----~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g-~------~~~~~~--  112 (407)
T PRK09064         46 REVTVWCSNDYLGMGQ----HPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG-K------EAALVF--  112 (407)
T ss_pred             ceEEEEECCCCcCCCC----CHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC-C------CcEEEE--
Confidence            3688999887753322    34566665544422 11     0123345567889999999863 2      344443  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC-CCcEEEEE
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLH  235 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~i  235 (363)
                       .+|+++...+..++....+++.|+.....+......++..|+++..++.       .|++.+++.++... ++++++++
T Consensus       113 -~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~  184 (407)
T PRK09064        113 -TSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAF  184 (407)
T ss_pred             -CcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEE
Confidence             5566665554222222237777776666666665566667777655542       37788888886432 34678888


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-CCeEEEEEcCccccccccccce
Q 017967          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG  314 (363)
Q Consensus       236 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~l~G~RvG  314 (363)
                      ++++||+|...+   +++|.++|+++|+++|+||+|..-.++..   ...+....+. ....++++||||.||++|   |
T Consensus       185 ~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~---g~g~~~~~~~~~~~div~~t~sKa~g~~G---G  255 (407)
T PRK09064        185 ESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPR---GGGIAERDGLMDRIDIIEGTLAKAFGVMG---G  255 (407)
T ss_pred             eCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCC---CCChHHhcCCCCCCeEEEEecchhhhccC---c
Confidence            999999999887   56667779999999999999973222211   1111111121 234788999999999888   9


Q ss_pred             EEEEeeCChhHHHHHHHHHHhhhccc--cCCCchHHHHHHhccccccc
Q 017967          315 AMNVVCSSSDLAARVKSQLKRLARPM--YSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       315 ~i~~v~~~~~~~~~~~~~l~~~~~~~--~~~~s~~~q~~~~~~l~~~~  360 (363)
                      |+  +++ ++    +++.+.......  ..+.++..+.++...|+..+
T Consensus       256 ~~--~~~-~~----~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~  296 (407)
T PRK09064        256 YI--AGS-AA----LVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLK  296 (407)
T ss_pred             eE--ecC-HH----HHHHHHHhCccccccCcCCHHHHHHHHHHHHHHh
Confidence            98  554 66    455554443322  22455566666655554433

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.71  E-value=1.1e-15  Score=147.20  Aligned_cols=195  Identities=15%  Similarity=0.126  Sum_probs=135.6

Q ss_pred             CCCCCC--cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----
Q 017967          120 KEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----  193 (363)
Q Consensus       120 ~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----  193 (363)
                      +.|...  ....+|++.+++++..        +++++  +.+|+.++.++   +..+.+||+|+++.+.|..+...    
T Consensus        39 ~~Y~r~~~p~~~~le~~la~l~g~--------~~~l~--~~sG~~al~~~---l~ll~~Gd~Vl~~~~~y~~~~~~~~~~  105 (378)
T TIGR01329        39 YDYTRSGNPTRTALESLLAKLDKA--------DRAFA--FSSGMAALDVI---TRLLNNGDEIIAGDDLYGGTDRLLTQV  105 (378)
T ss_pred             CccCCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH---HHHhCCCCEEEEcCCCchHHHHHHHHH
Confidence            445432  2356788888887532        35544  67788888766   33578999999999999877653    


Q ss_pred             HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC
Q 017967          194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (363)
Q Consensus       194 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~  273 (363)
                      +...|++++.++.       .|++.++++++   ++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|..
T Consensus       106 ~~~~G~~v~~vd~-------~d~~~le~~i~---~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~  172 (378)
T TIGR01329       106 VPRSGVVVVHVDT-------TDLDKVKAALG---PKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMS  172 (378)
T ss_pred             HHHcCcEEEEeCC-------CCHHHHHHhcC---cCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcc
Confidence            4568999999875       27899998886   35778888999999999875   77788889999999999999743


Q ss_pred             CcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc-ccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHH
Q 017967          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQ  352 (363)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l-~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~  352 (363)
                      ....      .++    +. .-.+++.|++|.++- .|.+.|++  ++.++.    +.+++..+......+.+++...++
T Consensus       173 ~~~~------~~l----~~-g~Di~v~S~tK~l~G~~~~~~G~v--~~~~~~----~~~~~~~~~~~~G~~~~~~~a~l~  235 (378)
T TIGR01329       173 PLLC------NPL----EL-GADIVYHSATKFLAGHSDVMAGVL--AVKGEE----IAKKVYFLQNSTGSGLAPFDCWLL  235 (378)
T ss_pred             cccC------Chh----hc-CCcEEEEecceeccCCccceeEEE--EeCcHH----HHHHHHHHHHhcCCcCCHHHHHHH
Confidence            3211      111    11 224889999998863 34789999  676565    334444333333445666666665


Q ss_pred             hcccc
Q 017967          353 LSSMN  357 (363)
Q Consensus       353 ~~~l~  357 (363)
                      ...|+
T Consensus       236 ~~~l~  240 (378)
T TIGR01329       236 LRGIK  240 (378)
T ss_pred             HccCC
Confidence            55443

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.71  E-value=5.6e-16  Score=148.32  Aligned_cols=194  Identities=17%  Similarity=0.150  Sum_probs=134.4

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEE
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (363)
                      +.....+|++++|++..        .+++++  ++||++|+.++  + ..+.+||+|+++.+.|......+....-+. .
T Consensus        52 ~~p~~~~le~~lA~leg--------~~~~v~--~~sG~aAi~~~--l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-~  117 (364)
T PRK07269         52 KNPTRAKLEETLAAIES--------ADYALA--TSSGMSAIVLA--F-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEG-R  117 (364)
T ss_pred             CCccHHHHHHHHHHHhC--------CCeEEE--eCCHHHHHHHH--H-HHhCCCCEEEEecCCcCchHHHHHHHHhcC-c
Confidence            55668899999999962        257777  99999998887  3 456899999999999977665443211010 1


Q ss_pred             EecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCch
Q 017967          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (363)
Q Consensus       204 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~  283 (363)
                      +..    ++..|++.++++++   ++++++++++|+||||.+.   ++++|+++|+++|+++|+|++|.......     
T Consensus       118 ~~~----~~~~d~~~l~~~i~---~~TklV~lesP~NPtg~~~---di~~I~~la~~~gi~vvvD~t~~~~~~~~-----  182 (364)
T PRK07269        118 FHF----TYANTEEELIAAIE---EDTDIVYIETPTNPLMVEF---DIEKVAKLAHAKGAKVIVDNTFYSPIYQR-----  182 (364)
T ss_pred             EEE----EecCCHHHHHHhcC---cCceEEEEECCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCcccccCC-----
Confidence            111    23468899999887   3567888999999999876   67778888999999999999975433221     


Q ss_pred             hHHHHHHhcCCeEEEEEcCccccccccc-cceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          284 SSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       284 ~~~~~~~~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                       +.    +. .-.++++|++|.++-.|- =.||+  ++.+++..+++.    ........+.+++...++...|+.
T Consensus       183 -pl----~~-gaDivv~S~tK~l~g~~d~~gG~v--~~~~~~l~~~~~----~~~~~~G~~~s~~~a~l~~~~L~t  246 (364)
T PRK07269        183 -PI----EL-GADIVLHSATKYLSGHNDVLAGVV--VTNDLELYEKLF----YNLNTTGAVLSPFDSYLLMRGLKT  246 (364)
T ss_pred             -ch----hh-CCcEEEecCceeccCCCcccceEE--EeCcHHHHHHHH----HHHHHhCCCCCHHHHHHHHcCCCc
Confidence             11    11 223889999999974342 25777  666677444443    222233456788888888776653

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.71  E-value=1.1e-15  Score=147.88  Aligned_cols=189  Identities=16%  Similarity=0.129  Sum_probs=131.4

Q ss_pred             cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHHhhCCCCe
Q 017967          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARVPW  201 (363)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~  201 (363)
                      ....+|++.+|++...       +..++   +.+|+.++.++  + ..+.+||+|+++.|.|+...    ..++..|+++
T Consensus        54 p~~~~le~~lA~l~g~-------~~~v~---~~sG~~ai~~~--l-~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v  120 (390)
T PRK08064         54 PTREALEDIIAELEGG-------TKGFA---FASGMAAISTA--F-LLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEH  120 (390)
T ss_pred             hhHHHHHHHHHHHhCC-------CCeEE---ECCHHHHHHHH--H-HHhCCCCEEEEccCccchHHHHHHHHHHHcCCEE
Confidence            3467899999999633       23343   47778887766  3 35679999999999997443    4456789999


Q ss_pred             EEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCC
Q 017967          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (363)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~  281 (363)
                      +.++.       .|++.+++.++   ++++++++++|+||||.+.+   +++|.++|+++|+++|+|++|..+....   
T Consensus       121 ~~v~~-------~d~~~l~~~l~---~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~---  184 (390)
T PRK08064        121 TFVDM-------TNLEEVAQNIK---PNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQK---  184 (390)
T ss_pred             EEECC-------CCHHHHHHhcC---CCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccccC---
Confidence            99876       26888988886   35678888999999999875   5566777999999999999987754321   


Q ss_pred             chhHHHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          282 DASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       282 ~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                         +.    +. ...+++.|+||.++ -.|...|++  ++.+++    +.+.++..........++.....+...++
T Consensus       185 ---~~----~~-g~Divv~S~tK~~~G~~~~laG~~--v~~~~~----~~~~l~~~~~~~g~~~~~~~a~l~~~gl~  247 (390)
T PRK08064        185 ---PL----DL-GADVVLHSATKFLAGHSDVLAGLA--VVKDEE----LAQKLYFLQNSFGAVLGVQDCWLVLRGLK  247 (390)
T ss_pred             ---ch----hh-CCcEEEeecceeccCCccceeEEE--EeCCHH----HHHHHHHHHHhcCCCCCHHHHHHHHcccC
Confidence               11    11 23578999999985 234567877  566666    45555555444444555555555544443

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.71  E-value=1.4e-15  Score=148.01  Aligned_cols=238  Identities=12%  Similarity=0.068  Sum_probs=145.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-CC-----CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      ..++|+...|.....    .+.+.++..+..+. +.     ...|.......+|++++|+++. .       +..++  +
T Consensus        46 ~~~~~~sn~ylgl~~----~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g-~-------~~~l~--~  111 (402)
T TIGR01821        46 DVTVWCSNDYLGMGQ----HPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG-K-------ESALV--F  111 (402)
T ss_pred             eEEEeEccCcCCCCC----CHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC-C-------CeEEE--E
Confidence            588999888754333    34455555444422 11     0112233446789999999863 2       23444  5


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC-CCcEEEEEc
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHG  236 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~  236 (363)
                      .+|+++...+..++....+|+.|+.....+......++..|+++..++.       .|++.+++.++... +++++++++
T Consensus       112 ~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~e  184 (402)
T TIGR01821       112 TSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIAFE  184 (402)
T ss_pred             CchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEEEc
Confidence            6678887766333222226777776666666555666777877655432       37788888776432 246788889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-CCeEEEEEcCccccccccccceE
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~l~G~RvG~  315 (363)
                      +|+||||.+.+   +++|.++|+++|+++|+||+|..-.++..   ........+. ....+++++|||.||++|   ||
T Consensus       185 ~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~---g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~  255 (402)
T TIGR01821       185 SVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPR---GGGIAERDGLMHRIDIIEGTLAKAFGVVG---GY  255 (402)
T ss_pred             CCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCC---CCccchhccCCCCCeEEEEechhhhccCC---ce
Confidence            99999999987   56677779999999999999873222211   0011111111 123688899999999888   88


Q ss_pred             EEEeeCChhHHHHHHHHHHhhhccc--cCCCchHHHHHHhccccc
Q 017967          316 MNVVCSSSDLAARVKSQLKRLARPM--YSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       316 i~~v~~~~~~~~~~~~~l~~~~~~~--~~~~s~~~q~~~~~~l~~  358 (363)
                      +  +++ ++    +++.+.......  ..+.++..+.++...|+.
T Consensus       256 i--~~~-~~----~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~  293 (402)
T TIGR01821       256 I--AAS-RK----LIDAIRSYAPGFIFTTSLPPAIAAGATASIRH  293 (402)
T ss_pred             e--ecC-HH----HHHHHHHhCcCceecCcCCHHHHHHHHHHHHH
Confidence            8  554 66    455555443321  224566666666555544

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.70  E-value=6.1e-16  Score=131.16  Aligned_cols=164  Identities=21%  Similarity=0.145  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchH-HHHhhCCCCeEEEecc
Q 017967          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK-NIFNDARVPWSEYRYY  207 (363)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~~~~~v~~~  207 (363)
                      .++++.+++++.      .+.+++++  +.||++|+.++.  ..+..+|++|+++.++|..+. ..++..|++++.++.+
T Consensus         3 ~~~~~~l~~~~~------~~~~~~~~--~~~~t~a~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~   72 (170)
T cd01494           3 EELEEKLARLLQ------PGNDKAVF--VPSGTGANEAAL--LALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVD   72 (170)
T ss_pred             HHHHHHHHHHcC------CCCCcEEE--eCCcHHHHHHHH--HHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccC
Confidence            578999999974      22567777  889999999983  444567999999999999998 7888999999999875


Q ss_pred             cCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHH
Q 017967          208 DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (363)
Q Consensus       208 ~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~  287 (363)
                      +......+.+.+++...  .+++.++++++++||+|...+.   ++|.++|+++|+++|+|++|..+......      .
T Consensus        73 ~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~------~  141 (170)
T cd01494          73 DAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPG------V  141 (170)
T ss_pred             CCCccchhhhhhhhccc--cCceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccccc------c
Confidence            33222233335544332  3467788889999999998876   66777799999999999999988765310      0


Q ss_pred             HHHhcCCeEEEEEcCccccccccccceEE
Q 017967          288 LFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       288 ~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      . .......+++.|++|.++.  .|+|++
T Consensus       142 ~-~~~~~~d~~~~s~~K~~~~--~~~G~l  167 (170)
T cd01494         142 L-IPEGGADVVTFSLHKNLGG--EGGGVV  167 (170)
T ss_pred             c-cccccCCEEEEEcccccCC--CceEEE
Confidence            0 1122456788999999984  789999

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.70  E-value=1.5e-15  Score=148.14  Aligned_cols=156  Identities=15%  Similarity=0.098  Sum_probs=117.5

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (363)
                      .....+|++++|++...        +..++  +.+|++|+.++  +..++.+||+|+++.+.|.+....+.    ..|++
T Consensus        57 ~pt~~~Le~~lA~l~g~--------~~~l~--~ssG~~Ai~~a--l~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~  124 (425)
T PRK06084         57 NPTNDVLEQRVAALEGG--------VGALA--VASGMAAITYA--IQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIE  124 (425)
T ss_pred             CchHHHHHHHHHHHhCC--------CceeE--ehhHHHHHHHH--HHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeE
Confidence            44567899999999532        23444  78999998888  45557899999999999986555543    24655


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      +..++.       .|++.+++++++   +++++++++|+||||.+++   +++|.++|+++|+++|+|++|.......  
T Consensus       125 v~~~d~-------~d~e~le~ai~~---~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~~--  189 (425)
T PRK06084        125 TRFAAH-------DDIAALEALIDE---RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLCR--  189 (425)
T ss_pred             EEEECC-------CCHHHHHHHhcc---CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence            555542       489999998873   4567777999999999987   5677778999999999999987433211  


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                          +.    +. .-.+++.|++|.++.+|.++|.+
T Consensus       190 ----p~----~~-gaDivv~S~tK~l~G~g~~~gG~  216 (425)
T PRK06084        190 ----PF----EH-GADIVVHSLTKYIGGHGTSIGGI  216 (425)
T ss_pred             ----hh----hc-CCCEEEECchhcccccccceeEE
Confidence                11    11 23488999999999899999998

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.70  E-value=2.1e-15  Score=145.50  Aligned_cols=246  Identities=12%  Similarity=0.046  Sum_probs=155.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.....-|.  -.+.+.+++.+.++...   +....+..++++++++++....+    .+++++  +.+|++|
T Consensus        30 ~~lD~~s~~~~~~lG~--~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~~~~~--~~sG~~a   98 (377)
T PRK02936         30 TYLDFTSGIAVCNLGH--CHPTVTKAVQEQLDDIW---HVSNLFTNSLQEEVASLLAENSA----GDLVFF--CNSGAEA   98 (377)
T ss_pred             EEEECCcchhhccCCC--CCHHHHHHHHHHHHhcc---ccccccCCHHHHHHHHHHHhcCC----CCEEEE--eCCcHHH
Confidence            6889887762111232  34556666655553311   11223456888999999866432    246767  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCCCCeE---EEecccCCCC--CCCHHHHHHHHHcCCCCcEEEEEcC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDARVPWS---EYRYYDPKTV--GLDFEGMIADIKAAPGGSFILLHGC  237 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~-~~~~G~~~~---~v~~~~~~~~--~~d~~~l~~~l~~~~~~~~~~~i~~  237 (363)
                      .+.+..+.......++|++.++.|.+.... ....|....   ..|..+...+  ..|++.+++.+.   ++..++++..
T Consensus        99 ~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~ii~e~  175 (377)
T PRK02936         99 NEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMN---EEVAAVMLEV  175 (377)
T ss_pred             HHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhcc---CCeEEEEEec
Confidence            998855432232336799999988755322 222221110   0111100000  127889998886   3466788888


Q ss_pred             CCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          238 AHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       238 p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      +++++|.. .+.+.+++|.++|++||+++|+||+|.+|...+   .......+ ...+++   .+|||.++ +|+|+||+
T Consensus       176 i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g---~~~~~~~~-~~~~di---~t~sK~l~-~G~~ig~v  247 (377)
T PRK02936        176 VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG---TLFAYEQF-GLDPDI---VTVAKGLG-NGIPVGAM  247 (377)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhhHHHhh-CCCCcE---EEEccccc-CCCccEEE
Confidence            89999987 578999999999999999999999999886543   12222222 222333   36999999 99999999


Q ss_pred             EEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          317 NVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       317 ~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                        +++ ++    +.+.+........++.++++|.++...|+.
T Consensus       248 --~~~-~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~  282 (377)
T PRK02936        248 --IGK-KE----LGTAFGPGSHGSTFGGNPLAMAAAKEVLQV  282 (377)
T ss_pred             --EEc-HH----HHhhccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence              665 66    555554433344457899999998877765

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.70  E-value=2.1e-15  Score=145.26  Aligned_cols=187  Identities=18%  Similarity=0.096  Sum_probs=131.9

Q ss_pred             ccHHHHHHHHHHHccCC-CC---CCCC----CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH
Q 017967          102 VLDVVKKAENLMLERGE-NK---EYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER  173 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~-~~---~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~  173 (363)
                      +++.+.++..+...... ..   .|..    ..+..++|+.+++++...     ..++|++  |.|+++++.++  +...
T Consensus        12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~v~~--~~g~t~al~~~--~~~~   82 (376)
T TIGR01977        12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAP-----SSAHVVF--TNNATTALNIA--LKGL   82 (376)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcC-----CCCeEEE--eCCHHHHHHHH--HHhc
Confidence            45677777766553211 11   2322    256778999999997432     1357877  99999999887  4455


Q ss_pred             hCCCCEEEEcCCCCcchHH----HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHH
Q 017967          174 YFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPE  249 (363)
Q Consensus       174 ~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~  249 (363)
                      +.+||+|++..+.|..+..    .++..|++++.++.+  .++.+|++.+++.+++   +++++++++||||||..++.+
T Consensus        83 ~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~---~~~~v~~~~~~n~tG~~~~~~  157 (376)
T TIGR01977        83 LKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCD--NEGLISPERIKRAIKT---NTKLIVVSHASNVTGTILPIE  157 (376)
T ss_pred             cCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC--CCCCcCHHHHHHhcCC---CCeEEEEECCCCCccccCCHH
Confidence            6799999999999877643    445669999999874  3567899999998863   466788899999999999865


Q ss_pred             HHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          250 QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       250 ~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                         +|.++|+++|+++|+|+++..-... .  +   +    ....-.+++.|+.|.++.|. ..|.+
T Consensus       158 ---~i~~l~~~~~~~livD~a~~~g~~~-~--~---~----~~~~~D~~~~s~~K~l~~p~-g~g~l  210 (376)
T TIGR01977       158 ---EIGELAQENGIFFILDAAQTAGVIP-I--D---M----TELAIDMLAFTGHKGLLGPQ-GTGGL  210 (376)
T ss_pred             ---HHHHHHHHcCCEEEEEhhhccCccC-C--C---c----hhcCCCEEEecccccccCCC-CceEE
Confidence               5677799999999999996432211 1  0   1    11233477889999876432 25666

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.69  E-value=1.5e-15  Score=147.96  Aligned_cols=201  Identities=15%  Similarity=0.083  Sum_probs=138.5

Q ss_pred             cCCCCCCccccHHHHHHHHHHHc--cCC-C-CC------CCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           93 YRTEELQPYVLDVVKKAENLMLE--RGE-N-KE------YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~--~~~-~-~~------Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      |.|..+..++++.+.+++.+...  ... + ..      +.......++|+.+++++...      ++++++  +.|+|+
T Consensus         6 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~------~~~v~~--~~g~t~   77 (404)
T PRK14012          6 YLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD------PREIVF--TSGATE   77 (404)
T ss_pred             EecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC------cCeEEE--eCCHHH
Confidence            44555556677888888766553  110 0 00      001123567788888886432      567877  999999


Q ss_pred             HHHHHHHHHHH--hCCCCEEEEcCCCCcchHHHH---hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcC
Q 017967          163 SLRLAAALIER--YFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (363)
Q Consensus       163 al~l~~~l~~~--~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~  237 (363)
                      +++++...+..  ..+||.|++++++|+.+...+   +..|++++.++.+  +++.+|++.+++++++   +++++++++
T Consensus        78 al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~--~~g~~d~~~l~~~i~~---~t~lv~~~~  152 (404)
T PRK14012         78 SDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQ--SNGIIDLEKLEAAMRD---DTILVSIMH  152 (404)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccC--CCCcCCHHHHHHhcCC---CCEEEEEEC
Confidence            99988443321  368999999999998775544   3469999999874  4577899999999873   467888899


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       238 p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                      ++||||..++   +++|.++|+++|+++|+|+++.. .....     .+    ....-.+++.|+.|.+| |+ ++|++ 
T Consensus       153 ~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~-g~~~~-----~~----~~~~~D~~~~s~~K~~g-p~-g~G~l-  216 (404)
T PRK14012        153 VNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSV-GKVPI-----DL----SKLKVDLMSFSAHKIYG-PK-GIGAL-  216 (404)
T ss_pred             cCCCccchhh---HHHHHHHHHHcCCEEEEEcchhc-CCccc-----Cc----ccCCCCEEEEehhhccC-CC-ceEEE-
Confidence            9999999886   56677789999999999999643 21110     11    11123456779999887 54 68998 


Q ss_pred             EeeCCh
Q 017967          318 VVCSSS  323 (363)
Q Consensus       318 ~v~~~~  323 (363)
                       +..++
T Consensus       217 -~~~~~  221 (404)
T PRK14012        217 -YVRRK  221 (404)
T ss_pred             -EEecC
Confidence             55533

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.69  E-value=2.5e-15  Score=144.79  Aligned_cols=189  Identities=14%  Similarity=0.117  Sum_probs=127.8

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~  200 (363)
                      ......|+++++++....       .. ++  +.+|+.|+.++   +..+.|||+|++++|.|++...    .+...|++
T Consensus        49 ~p~~~~Le~~la~l~g~~-------~a-l~--~~SG~~Al~~~---l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~  115 (380)
T PRK06176         49 NPTRFALEELIADLEGGV-------KG-FA--FASGLAGIHAV---FSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLS  115 (380)
T ss_pred             ChhHHHHHHHHHHHhCCC-------CE-EE--ECCHHHHHHHH---HHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeE
Confidence            334778999999985332       33 33  57778888765   3457899999999999976643    34567888


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      ++.++.       .|++.++++++   ++++++++.+|+||||.+++   +++|.++|+++|+++|+|++|.......  
T Consensus       116 v~~vd~-------~d~e~l~~ai~---~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~--  180 (380)
T PRK06176        116 CTIIDT-------SDLSQIKKAIK---PNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQN--  180 (380)
T ss_pred             EEEcCC-------CCHHHHHHhcC---cCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccCC--
Confidence            877764       37899998886   35678888999999999876   5577778999999999999998654321  


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCcccccccccc-ceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccc
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAER-IGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~R-vG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                          +.    +. .-.+++.|++|.++.+|-. .|++  ++.+++    +.++++..........++.....+...|
T Consensus       181 ----p~----~~-gaDivv~S~tK~l~g~~d~~gG~v--v~~~~~----~~~~~~~~~~~~G~~~~~~~~~l~~~gl  242 (380)
T PRK06176        181 ----PL----LL-GADIVVHSGTKYLGGHSDVVAGLV--TTNNEA----LAQEIAFFQNAIGGVLGPQDSWLLQRGI  242 (380)
T ss_pred             ----cc----cc-CCCEEEecCceeccCCccceeeEE--EecHHH----HHHHHHHHHHHhcCCCCHHHHHHHHhcc
Confidence                11    11 2348899999999766643 4555  555555    3333333333223334455445544433

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.68  E-value=5.6e-15  Score=143.46  Aligned_cols=239  Identities=13%  Similarity=0.132  Sum_probs=146.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|.-...-|+  -.|.+.+++.+.++... ...+.......+|.+.++++.    +    .+++.+  +.+|++
T Consensus        41 ~~lD~~~g~~~~~lGh--~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~--~~SGse  108 (396)
T PRK04073         41 RYMDMLSAYSAVNQGH--RHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLT----G----KDMVLP--MNTGAE  108 (396)
T ss_pred             EEEEcCCCHHhccCCC--CCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcC----C----CCeEEE--cCChHH
Confidence            6888866642111222  23455555554443211 011112223345555555542    1    257777  999999


Q ss_pred             HHHHHHHHHHHh-------CCC-CEEEEcCCCCcchH-HHHhhCCCC------------eEEEecccCCCCCCCHHHHHH
Q 017967          163 SLRLAAALIERY-------FPG-AKVLISSPTWGNHK-NIFNDARVP------------WSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       163 al~l~~~l~~~~-------~~g-d~Vlv~~P~y~~~~-~~~~~~G~~------------~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      |++.+..+...+       .+| ++|+...-+|.+.. ..+...+-.            +..++.       .|++.+++
T Consensus       109 A~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~  181 (396)
T PRK04073        109 AVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-------GDLEALKA  181 (396)
T ss_pred             HHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-------CCHHHHHH
Confidence            999886655443       134 67888777676543 222222211            122221       27888988


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHH-HHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEE
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPE-QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~-~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  300 (363)
                      .+.   ++++++++.+++||||..++.+ .+++|.++|+++|+++|+||+|.+|...+   ..... ...+..+++   .
T Consensus       182 ~i~---~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g---~~~~~-~~~~~~pdi---~  251 (396)
T PRK04073        182 AIT---PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTG---KLFAC-DWDNVTPDM---Y  251 (396)
T ss_pred             hcc---cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCc---HHHHh-hhcCCCCCE---E
Confidence            885   3467888888999999998765 59999999999999999999999886542   11111 111222333   3


Q ss_pred             cCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       301 S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +|||.+|.+|+|+||+  +++ ++    +.+.+........++.++++|.++...|+.
T Consensus       252 ~~sK~lg~gg~~ig~~--~~~-~~----i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~  302 (396)
T PRK04073        252 ILGKALGGGVFPISCV--AAN-RD----ILGVFTPGSHGSTFGGNPLACAVSIAALEV  302 (396)
T ss_pred             EecccccCCCCcceEE--EEc-HH----HHhhhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            5799999888999999  665 66    555554433344456788888888777653

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.67  E-value=3.2e-15  Score=146.36  Aligned_cols=251  Identities=9%  Similarity=0.023  Sum_probs=155.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.....-|+  -.+.+.+++.+.+.... +.+.+..+.+.. .++|+++....+.... +++.+  +.+|++|
T Consensus        42 ~~lD~~~g~~~~~lGh--~~~~i~~a~~~~~~~~~-~~~~~~~~~~~~-~~la~~l~~~~~~~~~-~~~~f--~~sGsea  114 (425)
T PRK08088         42 EYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKLS-HTCFQVLAYEPY-LELCEKMNQKVPGDFA-KKTLL--VTTGSEA  114 (425)
T ss_pred             EEEEcCCchhhcCCCC--CCHHHHHHHHHHHhhCC-CccccccCCHHH-HHHHHHHHHhCCCCCC-CEEEE--eCCcHHH
Confidence            6888877643221222  24555566555553321 122222223333 3666666554332221 36666  7888898


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCe--------------EE--EecccCCCCCCC----HHHHHHHH
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPW--------------SE--YRYYDPKTVGLD----FEGMIADI  223 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~--------------~~--v~~~~~~~~~~d----~~~l~~~l  223 (363)
                      .+.+..+...+....+|+..+++|.+....+...+...              ..  +|.. .  .+.+    ++.+++.+
T Consensus       115 ~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~--~~~~~~~~~~~l~~~l  191 (425)
T PRK08088        115 VENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCP-L--HGVSEDDAIASIERIF  191 (425)
T ss_pred             HHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCcc-c--cCccHHHHHHHHHHHH
Confidence            88886665555444567777999988865544332211              11  1211 0  1122    45688877


Q ss_pred             Hc--C-CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEE
Q 017967          224 KA--A-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (363)
Q Consensus       224 ~~--~-~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  300 (363)
                      ..  . .+...+++-+..+|+.....+.+.+++|.++|+++|+++|+||+|.++...+   ...++.    ....+..+.
T Consensus       192 ~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g---~~~~~~----~~~~~pdi~  264 (425)
T PRK08088        192 KNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG---TLFAME----QMGVAADLT  264 (425)
T ss_pred             HhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---chhHHh----hcCCCCCEE
Confidence            52  1 2234455556678898889999999999999999999999999999876542   122221    112344579


Q ss_pred             cCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       301 S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ||||.++ +|+|+||+  +++ ++    +++.+.........+.+++.|.++...|+..
T Consensus       265 s~sK~l~-~G~rig~v--~~~-~~----~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~  315 (425)
T PRK08088        265 TFAKSIA-GGFPLAGV--TGR-AE----VMDAIAPGGLGGTYAGNPIACAAALAVLKVF  315 (425)
T ss_pred             EEecccc-CCCcceee--Eec-HH----HHhhcCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            9999998 99999999  765 55    5555555555566678999999998887754

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.67  E-value=6.7e-15  Score=141.22  Aligned_cols=195  Identities=14%  Similarity=0.014  Sum_probs=132.5

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~  175 (363)
                      |+..+.+.|.+++....     .++.+  ..-..++|+.+++++....    +++.|++  |.|||++++.+  +..++.
T Consensus        10 gp~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~r~~la~l~~~~~----~~~~i~~--t~~~t~al~~~--~~~l~~   76 (363)
T TIGR02326        10 GPLTTSRTVKEAMLFDW-----CTWDSDYNIVVEQIRQQLLALATAEE----GYTSVLL--QGSGTFAVEAV--IGSAVP   76 (363)
T ss_pred             CCCCCCHHHHHHhCCCC-----CCCChHHHHHHHHHHHHHHHHhCCCC----CceEEEE--cCCCHHHHHHH--HHhcCC
Confidence            44556677777643321     11211  1124567888888864421    1236777  99999999988  455567


Q ss_pred             CCCEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          176 PGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      +||.+++..+++.+.  ...++..|++++.++++  +++.+|++.+++.++..+ +.+++.+++++||||..++.   ++
T Consensus        77 ~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~~~tG~~~~i---~~  150 (363)
T TIGR02326        77 KDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTG--EVEPPDVVEVEAILAADP-AITHIALVHCETTTGILNPI---EA  150 (363)
T ss_pred             CCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHHHhhCC-CccEEEEEeecCCccccCcH---HH
Confidence            888888877766555  36678899999999983  467899999999988543 34567778899999999875   67


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc-ccccccceEEEEeeCChhHH
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLA  326 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~l~G~RvG~i~~v~~~~~~~  326 (363)
                      |.++|+++|+++|+|+++ .+...     ...+..    .+..+++.|++|.+ |.+|  +||+  +++ ++.+
T Consensus       151 I~~l~~~~g~~livD~~~-~~g~~-----~~~~~~----~~~D~~~~s~~K~l~~p~G--~G~l--~~~-~~~~  209 (363)
T TIGR02326       151 VAKLAHRHGKVTIVDAMS-SFGGI-----PIDIAE----LHIDYLISSANKCIQGVPG--FGFV--IAR-QAEL  209 (363)
T ss_pred             HHHHHHHcCCEEEEEccc-cccCc-----ccchhh----cCccEEEecCccccccCCc--ceEE--EEC-HHHH
Confidence            788899999999999764 33321     112211    12347789999987 4455  6999  665 5433

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK07505 hypothetical protein; Provisional

Probab=99.67  E-value=8.6e-15  Score=142.46  Aligned_cols=236  Identities=13%  Similarity=0.065  Sum_probs=134.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-C-CCCCC----CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-ENKEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-~~~~Y----~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      ..+|+....+....    -.+.+.+++.+.+.. + .....    .......++++.+++++..        +.++   +
T Consensus        47 ~~ld~~s~~~lgl~----~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~--------~~~~---~  111 (402)
T PRK07505         47 TFVNFVSCSYLGLD----THPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA--------SVLT---F  111 (402)
T ss_pred             eEEEeecCCccCCC----CCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC--------CEEE---E
Confidence            68999765443112    234555555544422 1 00000    1223456777777777411        3333   3


Q ss_pred             cchhHHHHHHHHHHHH-h-CCCC-EEEEcCCCCcchH---HHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcE
Q 017967          158 LSGTGSLRLAAALIER-Y-FPGA-KVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~-~-~~gd-~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                      .+|+.|.+.+..+... . .+|+ .|++.+..|.+..   ......+.+++.+|.       .|++.+++.+.+   +++
T Consensus       112 ~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~---~~~  181 (402)
T PRK07505        112 TSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKT---NKT  181 (402)
T ss_pred             CChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhc---CCC
Confidence            5566676655333221 1 2233 3666665553321   112223456666664       478999998863   345


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh-cCCeEEEEEcCcccccccc
Q 017967          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYA  310 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~~l~G  310 (363)
                      ++++++|+||||.+++.   ++|.++|+++++++|+||+|....++.. ........+.. ..+++++++||||.||.+|
T Consensus       182 ~~vl~~p~~~~G~~~~~---~~i~~l~~~~~~~li~DEa~~~~~~g~~-g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G  257 (402)
T PRK07505        182 VAYVADGVYSMGGIAPV---KELLRLQEKYGLFLYIDDAHGLSIYGKN-GEGYVRSELDYRLNERTIIAASLGKAFGASG  257 (402)
T ss_pred             EEEEEecccccCCcCCH---HHHHHHHHHcCCEEEEECcccccCcCCC-CCchHHHHcCCCCCCCeEEEEechhhhhccC
Confidence            77778999999999984   5666779999999999999854433311 11112222212 4578999999999999776


Q ss_pred             ccceEEEEeeCChhHHHHHHHHHHhhhccc-cC-CCchHHHHHHhcccc
Q 017967          311 ERIGAMNVVCSSSDLAARVKSQLKRLARPM-YS-NPPPMLLGIQLSSMN  357 (363)
Q Consensus       311 ~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~-~~-~~s~~~q~~~~~~l~  357 (363)
                         ||+  ++++++    +++.+....... ++ +++.++..++...++
T Consensus       258 ---g~~--~~~~~~----~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~  297 (402)
T PRK07505        258 ---GVI--MLGDAE----QIELILRYAGPLAFSQSLNVAALGAILASAE  297 (402)
T ss_pred             ---eEE--EeCCHH----HHHHHHHhCCCceeCCCCCHHHHHHHHHHHH
Confidence               887  666677    455554443322 22 344556665555444

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.67  E-value=2.9e-15  Score=144.42  Aligned_cols=169  Identities=19%  Similarity=0.171  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccC
Q 017967          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP  209 (363)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~  209 (363)
                      .+++++.+++....+    .+++++  ++||++|+.++...+ .+.+||+|+++.|+|..+...+...|++++.++++ +
T Consensus        31 ~~~~~~e~~la~~~g----~~~~v~--~~sgt~al~~~l~~~-~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d-~  102 (375)
T PRK11706         31 GFTRRCQQWLEQRFG----SAKVLL--TPSCTAALEMAALLL-DIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR-P  102 (375)
T ss_pred             HHHHHHHHHHHHHhC----CCeEEE--ECCHHHHHHHHHHHh-CCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC-C
Confidence            444555444433322    268877  999999988873221 25699999999999999999999999999999985 3


Q ss_pred             CCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcC-CCCCCchhHHHH
Q 017967          210 KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS-GSLDNDASSVRL  288 (363)
Q Consensus       210 ~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~  288 (363)
                      +++.+|++.+++.+++   ++++++++   ||||...   ++++|.++|+++|+++|+|++|..... ++.     ....
T Consensus       103 ~~~~~d~~~le~~i~~---~tk~i~~~---~~~G~~~---~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~-----~~g~  168 (375)
T PRK11706        103 DTMNIDETLIEAAITP---KTRAIVPV---HYAGVAC---EMDTIMALAKKHNLFVVEDAAQGVMSTYKGR-----ALGT  168 (375)
T ss_pred             CcCCcCHHHHHHhcCC---CCeEEEEe---CCCCCcc---CHHHHHHHHHHcCCEEEEECccccccccCCe-----eeec
Confidence            4578999999998873   34555543   5799775   456788889999999999999876652 211     1111


Q ss_pred             HHhcCCeEEEEEcCc--cccccccccceEEEEeeCChhHHHHH
Q 017967          289 FATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       289 ~~~~~~~vi~~~S~S--K~~~l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      +     ..+.+.||.  |.++ +|.+.+++   +.+++..+++
T Consensus       169 ~-----~~~~~~Sf~~~K~l~-~g~gG~~~---~~~~~~~~~~  202 (375)
T PRK11706        169 I-----GHIGCFSFHETKNYT-AGEGGALL---INDPALIERA  202 (375)
T ss_pred             C-----cCEEEEeCCCCcccc-ccCCeEEE---ECCHHHHHHH
Confidence            1     122334443  9997 69887777   5567744433

>PLN02509 cystathionine beta-lyase

Probab=99.67  E-value=5.5e-15  Score=144.87  Aligned_cols=197  Identities=14%  Similarity=0.140  Sum_probs=129.2

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----Hh
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FN  195 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~  195 (363)
                      +.|... |.+ .++++.+++....+    .++.++  +++|++++.++   +.++.+||+|+++.|.|..+...    +.
T Consensus       125 ~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~--~~SG~aAi~~i---l~ll~~GD~VI~~~~~y~~t~~ll~~~l~  193 (464)
T PLN02509        125 YDYTRS-GNP-TRDALESLLAKLDK----ADRAFC--FTSGMAALSAV---THLIKNGEEIVAGDDVYGGSDRLLSQVVP  193 (464)
T ss_pred             CccCCC-CCH-HHHHHHHHHHHHhC----CCEEEE--eCcHHHHHHHH---HHHhCCCCEEEEcCCchhhHHHHHHHHHH
Confidence            567544 543 34444444433322    245555  68888887655   34578999999999999988644    45


Q ss_pred             hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCc
Q 017967          196 DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA  275 (363)
Q Consensus       196 ~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~  275 (363)
                      ..|++++.++.       .|++.++++++   ++++++++++|+||||..   .++++|+++|+++|+++|+|++|....
T Consensus       194 ~~G~~v~~vd~-------~d~e~l~~ai~---~~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~  260 (464)
T PLN02509        194 RSGVVVKRVNT-------TNLDEVAAAIG---PQTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPV  260 (464)
T ss_pred             HCCeEEEEeCC-------CCHHHHHHhCC---cCCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccccc
Confidence            78998887753       36888988886   356788889999999975   788899999999999999999975443


Q ss_pred             CCCCCCchhHHHHHHhcCCeEEEEEcCccccccccc-cceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhc
Q 017967          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLS  354 (363)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~  354 (363)
                      ...      +.    .. .-.++++|++|.++-+|- =.|.+  ++.++.    +.+.+..+........+++...++..
T Consensus       261 ~~~------pl----~~-gaDivv~S~tK~l~G~gdv~gG~v--~~~~~~----l~~~~~~~~~~~g~~l~p~~A~l~lr  323 (464)
T PLN02509        261 LSR------PL----EL-GADIVMHSATKFIAGHSDVMAGVL--AVKGEK----LAKEVYFLQNSEGSGLAPFDCWLCLR  323 (464)
T ss_pred             cCC------hh----hc-CCcEEEecCcccccCCCccceeEE--EeccHH----HHHHHHHHHHhcCCCcCHHHHHHHHh
Confidence            221      11    11 235889999999875443 24555  444444    22332222222233456666666655


Q ss_pred             ccc
Q 017967          355 SMN  357 (363)
Q Consensus       355 ~l~  357 (363)
                      .|+
T Consensus       324 ~L~  326 (464)
T PLN02509        324 GIK  326 (464)
T ss_pred             hhh
Confidence            544

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.67  E-value=7.3e-15  Score=141.25  Aligned_cols=187  Identities=14%  Similarity=0.027  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCCeEE
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSE  203 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~  203 (363)
                      ...|++++|++...        +++++  +.||++|+.++  +..++.+||+|++++|.|......    ++..|+++..
T Consensus        52 ~~~lE~~lA~l~g~--------~~~~~--~~sG~~Ai~~a--l~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~  119 (377)
T TIGR01324        52 HFALQDAMCELEGG--------AGCYL--YPSGLAAVTNS--ILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITY  119 (377)
T ss_pred             HHHHHHHHHHHhCC--------CcEEE--ECcHHHHHHHH--HHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEE
Confidence            36899999998532        46766  89999998887  556688999999999999877653    3567888776


Q ss_pred             EecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCch
Q 017967          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (363)
Q Consensus       204 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~  283 (363)
                      ++..       +.+.+++.++   ++++++++.+|+||||..   .++++|+++|+++|+++|+|++|..-....     
T Consensus       120 ~d~~-------~~e~l~~~i~---~~tklV~lesp~Np~g~~---~dl~~I~~la~~~g~~livD~t~a~g~~~~-----  181 (377)
T TIGR01324       120 YDPL-------IGEDIATLIQ---PNTKVLFLEAPSSITFEI---QDIPAIAKAARNPGIVIMIDNTWAAGLLFK-----  181 (377)
T ss_pred             ECCC-------CHHHHHHhcC---CCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCccccccC-----
Confidence            6431       2277888776   357788889999999765   678889999999999999999986533221     


Q ss_pred             hHHHHHHhcCCeEEEEEcCccccccc-cccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          284 SSVRLFATRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       284 ~~~~~~~~~~~~vi~~~S~SK~~~l~-G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       +    .+. .-.++++|++|.++-. +...|++  ++ +++..+++..    .........++.....+.+.|+
T Consensus       182 -p----l~~-gaDivv~S~tK~l~G~~d~~gG~v--~~-~~~~~~~l~~----~~~~~G~~l~p~~a~~~~rgl~  243 (377)
T TIGR01324       182 -P----LEH-GVDISIQAGTKYLVGHSDIMIGTV--VA-NARTWDQLRE----HSYLMGQMVDADDAYTTLRGLR  243 (377)
T ss_pred             -c----ccc-CceEEEecCceeccCCCCceEEEE--Ee-CHHHHHHHHH----HHHHhCCCCCHHHHHHHHhhhh
Confidence             1    122 3347899999999633 4667877  44 4664444432    2223334556666555555443

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.67  E-value=4e-15  Score=142.26  Aligned_cols=197  Identities=17%  Similarity=0.077  Sum_probs=132.7

Q ss_pred             CCCCCccccHHHHHHHHHHHccCC--CCCCCCC------cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHH
Q 017967           95 TEELQPYVLDVVKKAENLMLERGE--NKEYLPI------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL  166 (363)
Q Consensus        95 ~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~------~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l  166 (363)
                      |..+..++++.+.++..+......  ...+...      .-..++|+.+++++..      ++++|++  |.|+++++++
T Consensus         3 d~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~------~~~~v~~--~~g~t~a~~~   74 (353)
T TIGR03235         3 DHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGA------DTEEVIF--TSGATESNNL   74 (353)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--eCCHHHHHHH
Confidence            444555677888888876653211  0111111      1146788888888643      2578877  9999999988


Q ss_pred             HHHHHHHh--CCC-CEEEEcCCCCcchH---HHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          167 AAALIERY--FPG-AKVLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       167 ~~~l~~~~--~~g-d~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      +...+...  .+| +.|++....|+.+.   ..++..|++++.++.+  .++.+|++.+++.+++   +++++++++++|
T Consensus        75 ~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~l~~~l~~---~~~lv~~~~~~n  149 (353)
T TIGR03235        75 AILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD--ESGRIDVDELADAIRP---DTLLVSIMHVNN  149 (353)
T ss_pred             HHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccC--CCCcCCHHHHHHhCCC---CCEEEEEEcccC
Confidence            74333221  356 77888876665543   3455679999999984  3577999999998863   467888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      |||..++   +++|.++|+++|+++++|+++.--... .     .+    +...-.+++.|..|.+|.+|  +|++  +.
T Consensus       150 ~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~~-~-----~~----~~~~~D~~~~s~~K~~gp~g--~g~l--~~  212 (353)
T TIGR03235       150 ETGSIQP---IREIAEVLEAHEAFFHVDAAQVVGKIT-V-----DL----SADRIDLISCSGHKIYGPKG--IGAL--VI  212 (353)
T ss_pred             CceeccC---HHHHHHHHHHcCCEEEEEchhhcCCcc-c-----cc----cccCCCEEEeehhhcCCCCc--eEEE--EE
Confidence            9999987   466777799999999999994422111 0     01    11123466678899887666  6888  55


Q ss_pred             C
Q 017967          321 S  321 (363)
Q Consensus       321 ~  321 (363)
                      .
T Consensus       213 ~  213 (353)
T TIGR03235       213 R  213 (353)
T ss_pred             c
Confidence            5

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.66  E-value=7e-15  Score=143.11  Aligned_cols=236  Identities=16%  Similarity=0.121  Sum_probs=143.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|.-...-|.  -.+.+.+++.+.++... ...+....-..+|.+.++++.    +    .+++.+  +.+|++
T Consensus        41 ~~iD~~~~~~~~~lGh--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~--~~sGse  108 (403)
T PRK05093         41 EYIDFAGGIAVTALGH--CHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDAT----F----AERVFF--ANSGAE  108 (403)
T ss_pred             EEEEcCcCHHhccCCC--CCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhC----C----CCEEEE--eCchHH
Confidence            6889876621111222  24455555555443211 011111111234555555542    1    257777  899999


Q ss_pred             HHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHH-HHhhCC------------CCeEEEecccCCCCCCCHHHHHHHH
Q 017967          163 SLRLAAALIERYF-----PG-AKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       163 al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      |.+.+..+.....     .+ ++|+..+-+|.+... .....|            .+++.++.       .|++.+++.+
T Consensus       109 A~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l  181 (403)
T PRK05093        109 ANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAAVKAVI  181 (403)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHHHHh
Confidence            9998866544331     23 567777777766432 211111            11222221       2788998888


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCCC--CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          224 KAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~~--s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      .   ++++++++ +|.||+|.++  +.+.+++|.++|++||+++|+||+|.++.+.+.   ..+...+ +..++   +.|
T Consensus       182 ~---~~~aaiii-ep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~-~~~pd---i~s  250 (403)
T PRK05093        182 D---DHTCAVVV-EPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD---LFAYMHY-GVTPD---ILT  250 (403)
T ss_pred             c---CCeEEEEE-ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc---chhhhhc-CCCCC---EEE
Confidence            5   23555554 4899998876  899999999999999999999999999866531   2221111 11122   568


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |||.++ +|+|+||+  +++ ++    +++.+........++.+++.|.++...|+
T Consensus       251 ~sK~l~-~G~rig~v--v~~-~~----i~~~l~~~~~~~t~~~~~~~~~aa~a~L~  298 (403)
T PRK05093        251 SAKALG-GGFPIGAM--LTT-AE----IASHFKVGTHGSTYGGNPLACAVAEAVFD  298 (403)
T ss_pred             eccccc-CCcceEEE--EEc-HH----HHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            999999 99999999  776 55    55655543344455788888988877543

>PRK05968 hypothetical protein; Provisional

Probab=99.66  E-value=1e-14  Score=141.10  Aligned_cols=191  Identities=17%  Similarity=0.170  Sum_probs=131.8

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcch----HHHHhhCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH----KNIFNDARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~----~~~~~~~G~~  200 (363)
                      .....+|++++|++....        ..++  +.+|+.|+.++  +..++.|||+|+++.+.|...    ...+...|++
T Consensus        62 ~p~~~~le~~lA~l~g~~--------~av~--~~sG~~Ai~~a--l~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~  129 (389)
T PRK05968         62 NPTVRAFEEMLAKLEGAE--------DARG--FASGMAAISST--VLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVE  129 (389)
T ss_pred             ChhHHHHHHHHHHHhCCC--------cEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCce
Confidence            344679999999996432        3333  57788898777  455678999999999999864    3456678999


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      ++.++.       .|++.+++.+.    +++++++++   |||.+++..++++|+++|+++|+++|+|++|....+..  
T Consensus       130 v~~vd~-------~d~~~l~~~i~----~tklV~ie~---pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~--  193 (389)
T PRK05968        130 VDYVDG-------RDEEAVAKALP----GAKLLYLES---PTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR--  193 (389)
T ss_pred             EEEeCC-------CCHHHHHHhcc----cCCEEEEEC---CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC--
Confidence            988864       27888988773    244666654   55556677999999999999999999999997665331  


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                          +.    ..+ -.+++.|+||.++.+| .+.|++  +. +++.++++.....   .......+++.+.++...|+.
T Consensus       194 ----p~----~~g-~Divv~S~tK~l~g~~~~~gG~i--~~-~~~~~~~l~~~~~---~~~g~~~~~~~A~~~l~~L~t  257 (389)
T PRK05968        194 ----PI----TLG-VDLVIHSASKYLGGHSDTVAGVV--AG-SKEHIARINAEAY---PYLGAKLSPFEAWLLLRGLRT  257 (389)
T ss_pred             ----ch----hcC-CcEEEeeccccccCCCCeEEEEE--EE-CHHHHHHHHHHHH---HhCCCCCChHHHHHHHcccCc
Confidence                11    111 2477889999998655 578887  54 4664444432211   122346677777777766653

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.66  E-value=2.3e-14  Score=139.59  Aligned_cols=238  Identities=14%  Similarity=0.089  Sum_probs=144.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-CC-----CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      ..++|+...|.....+    +.|.++..+..+. +.     ...+....-..+|.+.+|+++..        +..++  +
T Consensus        46 ~~~~~~sn~ylgl~~~----p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--------~~~~~--~  111 (406)
T PRK13393         46 EVTVWCSNDYLGMGQH----PAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK--------EAALL--F  111 (406)
T ss_pred             cEEEeecccccCCCCC----HHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC--------CcEEE--e
Confidence            6889998887644333    3445554444322 10     01111222357788888888632        34444  5


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC-CCCcEEEEEc
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLHG  236 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~~~~i~  236 (363)
                      .+|+.|...+...+....+||.|++....|......++..|.+++.++.       .|++.+++.++.. ++++++++++
T Consensus       112 ~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~~  184 (406)
T PRK13393        112 TSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAFE  184 (406)
T ss_pred             CCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEEc
Confidence            6666777666332222227887777777777777777777877766653       3677888777642 2346788889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC-CeEEEEEcCccccccccccceE
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG-MELLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~~l~G~RvG~  315 (363)
                      +++||+|.+.+   +++|.++|+++++++|+||+|..-.++.. .  .......+.. ...++++||||.||++|   ||
T Consensus       185 ~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~-G--~g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~  255 (406)
T PRK13393        185 SVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPR-G--GGIAEREGLADRLTIIEGTLAKAFGVMG---GY  255 (406)
T ss_pred             CCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCC-C--CchhhhcCCCCCCeEEEEeCchhhcccC---ce
Confidence            99999999988   56667779999999999999862222211 0  1111111111 23677899999999888   99


Q ss_pred             EEEeeCChhHHHHHHHHHHhhhccc--cCCCchHHHHHHhccccc
Q 017967          316 MNVVCSSSDLAARVKSQLKRLARPM--YSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       316 i~~v~~~~~~~~~~~~~l~~~~~~~--~~~~s~~~q~~~~~~l~~  358 (363)
                      +  ++ +++    +++.+.......  ..+.++..+.++...|+.
T Consensus       256 ~--~~-~~~----~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~  293 (406)
T PRK13393        256 I--TG-SAA----LCDFIRSFASGFIFTTSLPPAVAAGALASVRH  293 (406)
T ss_pred             e--eC-CHH----HHHHHHHhCcCceecCccCHHHHHHHHHHHHH
Confidence            8  55 466    455555444332  234455556655555543

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.65  E-value=3.2e-15  Score=145.48  Aligned_cols=197  Identities=17%  Similarity=0.070  Sum_probs=136.0

Q ss_pred             CCCCCccccHHHHHHHHHHHccCC-CCC-CC------CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHH
Q 017967           95 TEELQPYVLDVVKKAENLMLERGE-NKE-YL------PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL  166 (363)
Q Consensus        95 ~~~~~~~~~~~v~~a~~~~~~~~~-~~~-Y~------~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l  166 (363)
                      |..+..++++.+.+++.+...... +.. ..      ......++|+.+++++..      ++++|++  |.|+|+++++
T Consensus         8 d~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~------~~~~v~~--~~g~t~a~~~   79 (402)
T TIGR02006         8 DYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGA------DSREIVF--TSGATESNNL   79 (402)
T ss_pred             eCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--eCCHHHHHHH
Confidence            334445667788888766552211 000 00      112456778888888643      2578888  9999999998


Q ss_pred             HHHHHHH--hCCCCEEEEcCCCCcchHHHH---hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          167 AAALIER--YFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       167 ~~~l~~~--~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +...+..  ..+||+|+++.+.|+.+...+   +..|++++.++++  .++.+|++.+++.+++   ++.++++++++||
T Consensus        80 ~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~l~~---~~~lv~v~~~~n~  154 (402)
T TIGR02006        80 AIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPK--SNGLIDLEELKAAIRD---DTILVSIMHVNNE  154 (402)
T ss_pred             HHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccC--CCCcCCHHHHHHhcCC---CCEEEEEECCCcC
Confidence            8543332  258999999999998765544   4579999999874  4567899999998863   4678888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||..++   +++|.++|+++|+++++|+++..-.. ..     .+    ....-.+++.|..|.+|.+|  +|++  +..
T Consensus       155 tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~~-~~-----~~----~~~~~D~~~~s~~K~~gp~G--~G~l--~~~  217 (402)
T TIGR02006       155 IGVIQD---IAAIGEICRERKVFFHVDAAQSVGKI-PI-----NV----NELKVDLMSISGHKIYGPKG--IGAL--YVR  217 (402)
T ss_pred             ceeccc---HHHHHHHHHHcCCEEEEEcchhcCCc-cc-----Cc----cccCCCEEEEehhhhcCCCc--eEEE--EEc
Confidence            999986   55677779999999999999643211 10     11    11123467788889887556  6888  544

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.65  E-value=3.1e-14  Score=136.81  Aligned_cols=202  Identities=13%  Similarity=0.092  Sum_probs=130.7

Q ss_pred             cccHHHHHHHHHHHccC-CCCC-CCC-CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh--C
Q 017967          101 YVLDVVKKAENLMLERG-ENKE-YLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--F  175 (363)
Q Consensus       101 ~~~~~v~~a~~~~~~~~-~~~~-Y~~-~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~--~  175 (363)
                      ++.+.+.+++.+..... .... |.. ..-..++++.+++++..      ++.++++  +.||++++.++...+...  .
T Consensus        31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~~~~--~~ggt~a~~~a~~~~~~~~~~  102 (371)
T PRK13520         31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHL------PDAYGYI--TSGGTEANIQAVRAARNLAKA  102 (371)
T ss_pred             CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCC------CCCCeEE--ecCcHHHHHHHHHHHHhhccC
Confidence            34566666665555321 1111 211 11124566777776532      1346666  899999987774333222  2


Q ss_pred             CCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHH
Q 017967          176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~  255 (363)
                      +||+|++.++.|..+...++..|++++.+|.+  +++.+|++.|++.+.+   ++..++++.++||||...+   +++|.
T Consensus       103 ~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~vi~~~~~~~tG~~~~---l~~I~  174 (371)
T PRK13520        103 EKPNIVVPESAHFSFDKAADMLGVELRRAPLD--DDYRVDVKAVEDLIDD---NTIGIVGIAGTTELGQVDP---IPELS  174 (371)
T ss_pred             CCceEEecCcchHHHHHHHHHcCceEEEecCC--CCCcCCHHHHHHHHhh---CCEEEEEEcCCcCCcccCC---HHHHH
Confidence            57999999999999998889999999999873  4567899999999974   3445556678899999987   55667


Q ss_pred             HHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       256 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      ++|+++|+++++|++|.++...-. .....+ .+ ....-..+..|..| |+++|.++|++  +..+++
T Consensus       175 ~l~~~~g~~livD~a~~~~~~~~~-~~~~~~-~~-~~~~vd~~~~s~~K-~~~a~~~~G~~--~~~~~~  237 (371)
T PRK13520        175 KIALENGIFLHVDAAFGGFVIPFL-DDPPNF-DF-SLPGVDSITIDPHK-MGLAPIPAGGI--LFRDES  237 (371)
T ss_pred             HHHHHcCCCEEEEecchhHHHHhh-cCCCCc-cc-cCCCCceEEECCcc-ccCccCCceEE--EEcCHH
Confidence            779999999999999986642100 000000 00 01111234456778 56688999998  665565

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.64  E-value=1.7e-14  Score=140.99  Aligned_cols=213  Identities=15%  Similarity=0.170  Sum_probs=130.3

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCC------CCcchHHH----HHHHHHHHhcCCCCcccCCcE
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAF----NKVTAELLFGADNSVLKEQRV  152 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~l----r~aia~~l~~~~~~~~~~~~i  152 (363)
                      .+.++|..+++      + +++.+.+++..........++.      ...-...+    |+.+++++...      ..+|
T Consensus        25 ~~~~~l~~~~n------~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~------~~~i   91 (416)
T PRK00011         25 EEHIELIASEN------F-VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAE------YANV   91 (416)
T ss_pred             hcCeeeecccC------c-CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC------ceee
Confidence            36799987663      2 4677777765433110000110      11112222    33556654322      3345


Q ss_pred             EEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-----HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC
Q 017967          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (363)
Q Consensus       153 ~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~-----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (363)
                      ++   .+|+.++.++  +..++.|||+|+++.|+|..+..     .+...|++++.++++ .+++.+|++.+++.+++. 
T Consensus        92 ~~---~sgt~al~~~--l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~~~-  164 (416)
T PRK00011         92 QP---HSGSQANAAV--YFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVD-EETGLIDYDEVEKLALEH-  164 (416)
T ss_pred             ec---CCchHHHHHH--HHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcC-cccCCcCHHHHHHHHHhc-
Confidence            43   4568888776  44557899999999999976532     123456788888774 235789999999999742 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC-CCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc
Q 017967          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (363)
Q Consensus       228 ~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  306 (363)
                       +++++++++++||  ..   .++++|.++|+++|+++|+|++|. ++.+.+..  ...    +.  ...+++.||||.+
T Consensus       165 -~~k~v~~~~~~~~--~~---~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~--~~~----~~--~~di~~~S~~K~l  230 (416)
T PRK00011        165 -KPKLIIAGASAYS--RP---IDFKRFREIADEVGAYLMVDMAHIAGLVAAGVH--PSP----VP--HADVVTTTTHKTL  230 (416)
T ss_pred             -CCCEEEECCCcCC--Cc---cCHHHHHHHHHHcCCEEEEECcchhcccccCcc--CCC----CC--CCcEEEecCCcCC
Confidence             3456666665555  33   346788888999999999999964 33322110  001    11  1247799999976


Q ss_pred             ccccccceEEEEeeCChhHHHHHHHHHHhhh
Q 017967          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLA  337 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~  337 (363)
                        +|.|.||+  ++++++    ++++++...
T Consensus       231 --~g~~gg~i--~~~~~~----~~~~l~~~~  253 (416)
T PRK00011        231 --RGPRGGLI--LTNDEE----LAKKINSAV  253 (416)
T ss_pred             --CCCCceEE--EeCCHH----HHHHHHHHh
Confidence              69999999  776666    445554443

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.64  E-value=1.1e-14  Score=143.71  Aligned_cols=200  Identities=18%  Similarity=0.197  Sum_probs=130.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC-----CcchHHHHHHHHHH---HhcCCCCcccCCcEEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEGLAAFNKVTAEL---LFGADNSVLKEQRVATV  155 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-----~~G~~~lr~aia~~---l~~~~~~~~~~~~i~~~  155 (363)
                      +.++|+.|.+.     ...+..+.......  . ....|.+     ..|   .+++++++   +....+.+  .+++.+ 
T Consensus        69 ~~~~lg~g~~~-----~~~p~~~~~~~~~~--~-~~~~y~~~~~~~~~g---~~~~~~e~~~~la~l~g~~--~~~v~~-  134 (447)
T PRK00451         69 YPSFLGAGAYD-----HYIPAVVDHIISRS--E-FYTAYTPYQPEISQG---TLQAIFEYQTMICELTGMD--VANASM-  134 (447)
T ss_pred             CcccCcccccC-----CcCcHHHHHHHhch--h-HHHhcCCCCCccchH---HHHHHHHHHHHHHHHhCCC--cceEEe-
Confidence            67788888862     22334444433211  1 1123544     444   44444322   23333332  457777 


Q ss_pred             eccchhHHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhh----CCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCc
Q 017967          156 QGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (363)
                       |.||+++++.+  +..+ ..+||+|+++++.|+.+...++.    .|++++.++++  ++ .+|++++++.++   +++
T Consensus       135 -~~g~t~~~~~~--~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~--~~-~~d~~~l~~~i~---~~t  205 (447)
T PRK00451        135 -YDGATALAEAA--LMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYE--DG-VTDLEALEAAVD---DDT  205 (447)
T ss_pred             -cCcHHHHHHHH--HHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCC--CC-CCCHHHHHHhcC---CCe
Confidence             99999998777  3343 36899999999999988877654    79999999984  24 899999999886   346


Q ss_pred             EEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEE--ecCCCCCcCCCCCCchhHHHHHHhcCCeEEEE--EcCcccc
Q 017967          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF--DVAYQGFASGSLDNDASSVRLFATRGMELLVA--QSYSKNL  306 (363)
Q Consensus       231 ~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~--De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~--~S~SK~~  306 (363)
                      +++++++| ||||.+.+   +++|.++|+++|+++++  |....++...      +     .+.+.++++.  ++|||.+
T Consensus       206 ~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~~~------~-----~~~~~D~~~~s~~k~~~~~  270 (447)
T PRK00451        206 AAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLLKP------P-----GEYGADIVVGEGQPLGIPL  270 (447)
T ss_pred             EEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccCCC------c-----ccCCCCEEEECCCcCCCCC
Confidence            77788889 99999864   67778889999999888  4443221110      0     0112233332  3789999


Q ss_pred             ccccccceEEEEeeCChh
Q 017967          307 GLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~~~~  324 (363)
                      ++.|+|+||+  +++ ++
T Consensus       271 ~~~Gpg~G~l--~~~-~~  285 (447)
T PRK00451        271 SFGGPYLGFF--ATR-KK  285 (447)
T ss_pred             CCCCCCchHH--Hhh-HH
Confidence            8899999999  554 55

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.64  E-value=3e-14  Score=137.04  Aligned_cols=186  Identities=12%  Similarity=0.037  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCCCeEEEe
Q 017967          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYR  205 (363)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~  205 (363)
                      .|++.++....+       ++.++   +.+|++|+..+  ++.++.+||+|+++.|.|+++..    .++..|+++..++
T Consensus        68 ~Le~~la~le~~-------~~~v~---~sSG~aAi~~~--l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd  135 (395)
T PRK05967         68 ALCKAIDALEGS-------AGTIL---VPSGLAAVTVP--FLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYD  135 (395)
T ss_pred             HHHHHHHHHhCC-------CCEEE---ECcHHHHHHHH--HHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeC
Confidence            566666665321       34443   57789998887  56678899999999999999875    4578899888875


Q ss_pred             cccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhH
Q 017967          206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (363)
Q Consensus       206 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  285 (363)
                      ..       +.+.++++++   ++++++++.+|+||++   ...++++|+++|+++|+++|+|++|....+-.      +
T Consensus       136 ~~-------~~e~l~~al~---~~TklV~lesPsNP~l---~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~------p  196 (395)
T PRK05967        136 PE-------IGAGIAKLMR---PNTKVVHTEAPGSNTF---EMQDIPAIAEAAHRHGAIVMMDNTWATPLYFR------P  196 (395)
T ss_pred             CC-------CHHHHHHhcC---cCceEEEEECCCCCCC---cHHHHHHHHHHHHHhCCEEEEECCccCceecC------h
Confidence            41       3477888886   3577888899999975   67889999999999999999999997654321      1


Q ss_pred             HHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          286 VRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       286 ~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                          ++. .-.+++.|.+|.++ -.+...|++   +.+++..++    +.........+.+++....+.+.|+.
T Consensus       197 ----l~~-GaDivv~S~tKy~~Gh~d~~~G~v---~~~~~~~~~----l~~~~~~~G~~~~p~da~l~~rgl~T  258 (395)
T PRK05967        197 ----LDF-GVDISIHAATKYPSGHSDILLGTV---SANEKCWPQ----LLEAHGTLGLCAGPDDTYQILRGLRT  258 (395)
T ss_pred             ----hHc-CCCEEEEecccccCCCCCeeEEEE---EcCHHHHHH----HHHHHHHcCCCCCHHHHHHHHcCccc
Confidence                122 23488999999864 234667766   445653333    33333345567888888888776653

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.64  E-value=2.7e-14  Score=138.35  Aligned_cols=235  Identities=14%  Similarity=0.095  Sum_probs=139.9

Q ss_pred             EeeccccCCCCCCccccHHHHHHHHHHHc---cCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           87 NLGVGAYRTEELQPYVLDVVKKAENLMLE---RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~---~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ||+...|..-..+|.+.+.+.+++.+...   .+. ..|+...+..+|++++|+++..       ++.+++  +.|.+..
T Consensus         2 ~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr-~~yg~~~~~~~LE~~lA~~~g~-------e~al~~--~sG~~a~   71 (392)
T PLN03227          2 NFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPR-GFYGTIDAHLELEQCMAEFLGT-------ESAILY--SDGASTT   71 (392)
T ss_pred             CCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccc-cccCChHHHHHHHHHHHHHhCC-------CcEEEe--cCcHHHH
Confidence            45555554333334334444444433210   022 3377777899999999999744       355555  4444444


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC--------CCCcEEEEE
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA--------PGGSFILLH  235 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~--------~~~~~~~~i  235 (363)
                      . .+  +..++.+||.|++.++.|..+...+...+.+++.++..+    --+++.+.+.+...        .++++++++
T Consensus        72 ~-~~--i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d----~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~  144 (392)
T PLN03227         72 S-ST--VAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHND----MKDLRRVLEQVRAQDVALKRKPTDQRRFLVV  144 (392)
T ss_pred             H-HH--HHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCC----HHHHHHHHHHhhhhccccccccCCCcEEEEE
Confidence            3 33  455678999999999999999887777777777665421    11234433344321        124678888


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH-H-hcCCeEEEEEcCccccccccccc
Q 017967          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF-A-TRGMELLVAQSYSKNLGLYAERI  313 (363)
Q Consensus       236 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~-~~~~~vi~~~S~SK~~~l~G~Rv  313 (363)
                      .+++||+|.+.+   +++|.++|+++|+++|+||+|. +..-+... ......+ . ......+++.|+||.+|   .+.
T Consensus       145 E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~-~g~~g~~G-~g~~~~~g~~p~~~~Div~~slsk~~g---~~g  216 (392)
T PLN03227        145 EGLYKNTGTLAP---LKELVALKEEFHYRLILDESFS-FGTLGKSG-RGSLEHAGLKPMVHAEIVTFSLENAFG---SVG  216 (392)
T ss_pred             cCCcCCCCcccC---HHHHHHHHHHcCCEEEEECccc-ccccCCCC-CcHHHHcCCCCCCCceEEEeechhhhh---ccC
Confidence            999999999998   5567888999999999999986 44221110 1111111 0 11234688889999765   556


Q ss_pred             eEEEEeeCChhHHHHHHHHHHhhhcc-ccCC-CchHHHHHHh
Q 017967          314 GAMNVVCSSSDLAARVKSQLKRLARP-MYSN-PPPMLLGIQL  353 (363)
Q Consensus       314 G~i~~v~~~~~~~~~~~~~l~~~~~~-~~~~-~s~~~q~~~~  353 (363)
                      |++  +++ ++    +++.++..... .+.+ .+++.+.++.
T Consensus       217 g~v--~~~-~~----~~~~~~~~~~~~~~~~~~~p~~~~aa~  251 (392)
T PLN03227        217 GMT--VGS-EE----VVDHQRLSGSGYCFSASAPPFLAKADA  251 (392)
T ss_pred             cEE--ecC-HH----HHHHHHHhCcCccccCCCCHHHHHHHH
Confidence            888  544 65    44444433222 2332 2354555443

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.62  E-value=2.9e-14  Score=137.65  Aligned_cols=194  Identities=15%  Similarity=0.042  Sum_probs=133.6

Q ss_pred             cCCCCCCccccHHHHHHHHHHHccCCCCCCCC---------CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           93 YRTEELQPYVLDVVKKAENLMLERGENKEYLP---------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      |.|..+..++++.+.+++.+.....  ..++.         ..-..++|+.+++++..      ++++|++  |.|+|++
T Consensus         2 yld~aa~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~------~~~~i~~--t~~~t~a   71 (379)
T TIGR03402         2 YLDNNATTRVDPEVLEAMLPYFTEY--FGNPSSMHSFGGEVGKAVEEAREQVAKLLGA------EPDEIIF--TSGGTES   71 (379)
T ss_pred             cCCCcCCCCCCHHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--eCcHHHH
Confidence            3445555667788888887765321  12211         11245677888887643      2678888  9999999


Q ss_pred             HHHHHHHHHHh-CCCCEEEEcCCCCcchHHH---HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCC
Q 017967          164 LRLAAALIERY-FPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (363)
Q Consensus       164 l~l~~~l~~~~-~~gd~Vlv~~P~y~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~  239 (363)
                      ++++...+... .+||.|++....|+.+...   ++..|++++.++.+  +++.+|++.+++.+++   ++.++++++++
T Consensus        72 ~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~g~~~~~~l~~~i~~---~~~lv~i~~~~  146 (379)
T TIGR03402        72 DNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVD--EEGRLDLEELRAAITD---DTALVSVMWAN  146 (379)
T ss_pred             HHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccC--CCCcCCHHHHHHhcCC---CcEEEEEEccc
Confidence            98884433212 3568899998888766543   44579999999874  3467999999999863   56788889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      ||||..++.+   +|.++|+++|+++++|+++.. ...+.     .+    ....-.+++.|..|.+|.+|  +|++
T Consensus       147 n~tG~~~~~~---~I~~l~~~~g~~vivD~~~~~-g~~~~-----~~----~~~~~D~~~~s~~K~~gp~G--~g~l  208 (379)
T TIGR03402       147 NETGTIFPIE---EIGEIAKERGALFHTDAVQAV-GKIPI-----DL----KEMNIDMLSLSGHKLHGPKG--VGAL  208 (379)
T ss_pred             CCeeecccHH---HHHHHHHHcCCEEEEECcccc-ccccc-----Cc----ccCCCCEEEEcHHHcCCCCc--eEEE
Confidence            9999999865   577779999999999999753 21110     11    11123366778889777666  6777

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.62  E-value=2.8e-14  Score=138.65  Aligned_cols=189  Identities=13%  Similarity=0.061  Sum_probs=130.3

Q ss_pred             cEEEEeccchhH-HHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHhhCCCCeEEEec-ccCCCCCCCHHHHHHHHHcCC
Q 017967          151 RVATVQGLSGTG-SLRLAAALIERYF-PGAKVLISSPTWGNHKNIFNDARVPWSEYRY-YDPKTVGLDFEGMIADIKAAP  227 (363)
Q Consensus       151 ~i~~~~t~ggt~-al~l~~~l~~~~~-~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~l~~~~  227 (363)
                      ..++  ++|+|+ ++.++...+.... +||.|+++.-++......+...|++++.++. .+++++.+|++.+++++++..
T Consensus       125 ~a~~--v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~  202 (444)
T TIGR03531       125 SAFV--VPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIG  202 (444)
T ss_pred             EEEE--ECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhcc
Confidence            4555  789995 6665522211112 5899999999999999999999999999995 345679999999999998533


Q ss_pred             CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH----hcCCeEEEEEcCc
Q 017967          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA----TRGMELLVAQSYS  303 (363)
Q Consensus       228 ~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~----~~~~~vi~~~S~S  303 (363)
                      .+.+++++.+|+  |+.....+++++|+++|++||+++|+|++|.....        ....+.    ..+.-.+++.|++
T Consensus       203 ~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~--------~~~~~~~~g~~~Grad~vv~s~h  272 (444)
T TIGR03531       203 PDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN--------KYMELINKAIKVGRVDAVVSSTD  272 (444)
T ss_pred             CCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh--------hhhhhhhccccccCCCeEEEeCc
Confidence            245666666665  66666789999999999999999999999985321        111111    1111256688999


Q ss_pred             cccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       304 K~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      |.+.++|+  |+++ ++.+++.    .+++.....  ....+.+.|.+.+.++....
T Consensus       273 K~l~~pg~--Gg~I-~~~d~el----~~~i~~~y~--g~~~~s~~~~~~~~ll~~G~  320 (444)
T TIGR03531       273 KNFMVPVG--GAII-YSFDENF----IQEISKSYP--GRASASPSLDVLITLLSLGS  320 (444)
T ss_pred             cCCCCCCC--EEEE-EECCHHH----HHHHHHhcc--CCCCChHHHHHHHHHHHhCH
Confidence            99998887  7762 3556773    444443311  12344567877777665443

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.62  E-value=6.1e-14  Score=137.42  Aligned_cols=169  Identities=15%  Similarity=0.025  Sum_probs=120.1

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHH-------HhCCCCEEEEcCCCCcchHHHHhhCCCC
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE-------RYFPGAKVLISSPTWGNHKNIFNDARVP  200 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~-------~~~~gd~Vlv~~P~y~~~~~~~~~~G~~  200 (363)
                      ..+|++++|+++..        +++++  +++|++++.++...+.       .+.|||+|+++.|+|..+...+...|++
T Consensus        65 ~~~fe~~lA~~~g~--------~~~v~--~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~  134 (438)
T PRK15407         65 NDAFEKKLAEFLGV--------RYALL--VNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLV  134 (438)
T ss_pred             HHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCE
Confidence            57899999999643        35766  8999999888743332       2469999999999999999999999999


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcC-CCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS-GSL  279 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~-~~~  279 (363)
                      ++.++++ ..++.+|++.+++.++.   +++++++++   ++|..   .++++|.++|+++|+++|+|+++.--.. .+.
T Consensus       135 pv~vdvd-~~~~~id~~~le~~i~~---~tkaVi~~~---~~G~p---~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~  204 (438)
T PRK15407        135 PVFVDVE-LPTYNIDASLLEAAVSP---KTKAIMIAH---TLGNP---FDLAAVKAFCDKHNLWLIEDNCDALGSTYDGR  204 (438)
T ss_pred             EEEEecC-CCcCCcCHHHHHHHcCc---CCeEEEEeC---CCCCh---hhHHHHHHHHHHCCCEEEEECccchhhhcCCe
Confidence            9999985 35788999999998863   355555443   34532   4678888999999999999999754332 210


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHH
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~  328 (363)
                           .+-   ..++-.++...-+|.+. .|. -|++  ++.+++..++
T Consensus       205 -----~~G---~~gd~~~fSf~~~k~~~-~ge-GG~l--~t~d~~l~~~  241 (438)
T PRK15407        205 -----MTG---TFGDIATLSFYPAHHIT-MGE-GGAV--FTNDPLLKKI  241 (438)
T ss_pred             -----eee---ccCceEEEeCCCCCCcc-ccC-ceEE--EECCHHHHHH
Confidence                 111   12232333333467785 566 4888  8877774443

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.62  E-value=7.5e-14  Score=134.87  Aligned_cols=193  Identities=18%  Similarity=0.066  Sum_probs=131.2

Q ss_pred             cHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCEEE
Q 017967          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVL  181 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~Vl  181 (363)
                      .+...+++.+.+...   .|....+..+|++++++++...        +.++  +.||++|+.++  +..+ +.+||+|+
T Consensus         9 ~~~~~~~v~~~~~~~---~~~~g~~~~~le~~la~~~g~~--------~~v~--~~sgt~al~~~--l~al~~~~Gd~Vi   73 (380)
T TIGR03588         9 DQDDIDAVVEVLKSD---FLTQGPTVPAFEEALAEYVGAK--------YAVA--FNSATSALHIA--CLALGVGPGDRVW   73 (380)
T ss_pred             CHHHHHHHHHHHhcC---CccCChhHHHHHHHHHHHHCCC--------eEEE--EcCHHHHHHHH--HHHcCCCCCCEEE
Confidence            334445555544332   2434556789999999997442        3334  56899998888  3333 56999999


Q ss_pred             EcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC-CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHh
Q 017967          182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (363)
Q Consensus       182 v~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~  260 (363)
                      ++.|+|..+...++..|++++.++++ ++++.+|++.+++.+++.+ ++++++++   .|++|...+   +++|.++|++
T Consensus        74 v~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~---~~~i~~l~~~  146 (380)
T TIGR03588        74 TTPITFVATANCALYCGAKVDFVDID-PDTGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVD---MQAIAALAKK  146 (380)
T ss_pred             eCCcchHHHHHHHHHcCCEEEEEecC-CCcCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCC---HHHHHHHHHH
Confidence            99999999999999999999999985 3467899999999997321 13455553   467897754   6777888999


Q ss_pred             cCCeEEEecCCCCCc-CCCCCCchhHHHHHHhcCCeEEEEEcC--ccccccccccceEEEEeeCChhHHHHH
Q 017967          261 KNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       261 ~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~vi~~~S~--SK~~~l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      +|+++|+|+++.... +++.     .+..+ +.+  .+.+.||  +|.++. | .-|++  ++.+++..+++
T Consensus       147 ~~~~lI~D~a~a~g~~~~~~-----~~g~~-~~~--d~~~~S~~~~K~~~~-~-~GG~v--~~~~~~~~~~~  206 (380)
T TIGR03588       147 HGLKIIEDASHALGAEYGGK-----PVGNC-RYA--DATVFSFHPVKIITT-A-EGGAV--TTNDEELAERM  206 (380)
T ss_pred             cCCEEEEECCCcccCccCCE-----eCCCc-ccc--ceEEEecCCCCcccc-c-CceEE--EECCHHHHHHH
Confidence            999999999976532 2211     11000 122  3455555  588863 4 46777  77777754444

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.61  E-value=5.7e-14  Score=136.82  Aligned_cols=242  Identities=13%  Similarity=0.070  Sum_probs=148.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.-...-|..  .+.+.+++.+.+...  ....| ......+|.+.++++. .       .+++.+  +.+|+
T Consensus        40 ~~lD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~-~-------~~~v~~--~~sGs  106 (406)
T PRK12381         40 EYIDFAGGIAVNALGHA--HPALREALNEQASKFWHTGNGY-TNEPVLRLAKKLIDAT-F-------ADRVFF--CNSGA  106 (406)
T ss_pred             EEEEcCcCHhhccCCCC--CHHHHHHHHHHHhhcccccCcc-CCHHHHHHHHHHHhhC-C-------CCeEEE--cCCcH
Confidence            68888765321222332  445565555544321  11122 1222345666666552 1       268877  99999


Q ss_pred             HHHHHHHHHHHHhC------CCCEEEEcCCCCcchHHHHhh-CCCCeEE---Eeccc--CCCCCCCHHHHHHHHHcCCCC
Q 017967          162 GSLRLAAALIERYF------PGAKVLISSPTWGNHKNIFND-ARVPWSE---YRYYD--PKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       162 ~al~l~~~l~~~~~------~gd~Vlv~~P~y~~~~~~~~~-~G~~~~~---v~~~~--~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      +|++.+..+.....      ...+|+..+.+|.+....... .|.....   .++..  ......|++.+++.+.   ++
T Consensus       107 eA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~  183 (406)
T PRK12381        107 EANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALID---DQ  183 (406)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhcc---CC
Confidence            99999976654442      346899999999777543322 2211000   00000  0001247889988885   23


Q ss_pred             cEEEEEcCCCCCCCCCC--CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          230 SFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~--s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                      ..++++ +|.||+|-++  +.+.+++|.++|++||+++|+||+|.++...+   .......+ ...++   +.+|||.++
T Consensus       184 ~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G---~~~~~~~~-~v~pD---i~t~sK~l~  255 (406)
T PRK12381        184 TCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG---ELYAYMHY-GVTPD---VLTTAKALG  255 (406)
T ss_pred             eeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc---chhhhHhh-CCCCC---EEEehhhhh
Confidence            445554 7999998765  68999999999999999999999998886543   12221111 21223   359999998


Q ss_pred             cccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       +|+|+||+  +++ ++    +++.+........++.+++.|.++...|+
T Consensus       256 -gG~~ig~~--~~~-~~----~~~~~~~~~~~~t~~~~pl~~aaa~a~l~  297 (406)
T PRK12381        256 -GGFPIGAM--LTT-EK----CASVMTVGTHGTTYGGNPLASAVAGKVLE  297 (406)
T ss_pred             -CCCceEEE--EEc-HH----HHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Confidence             89999999  665 55    55555543344455778888888766443

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.61  E-value=9.8e-14  Score=133.80  Aligned_cols=240  Identities=13%  Similarity=0.108  Sum_probs=152.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.....-+  + .+.+.+++.+.+...  ..+ +..-..++++.+++.+....     ...+.+  +.+|++|
T Consensus        30 ~~lD~~s~~~~~~lG--~-~p~v~~a~~~~~~~~--~~~-~~~~~~~~~~~la~~l~~~~-----~~~~~~--~~SGseA   96 (375)
T PRK04260         30 KYLDFSSGIGVTNLG--F-HPQVQQALQKQAGLI--WHS-PNLYLNSLQEEVAQKLIGDK-----DYLAFF--CNSGAEA   96 (375)
T ss_pred             EEEECCCCcccccCC--C-CHHHHHHHHHHHHhc--Ccc-cCccCCHHHHHHHHHHhcCc-----CCEEEE--cCccHHH
Confidence            688987664211122  2 355777766655431  112 22234678889998764421     123455  8999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchH-HHHhhCCC---------CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEE
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHK-NIFNDARV---------PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL  233 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~---------~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~  233 (363)
                      .+.+..+......+++|++.+.+|.+.. ..+...|.         .+..++..    ...|++.+++.+.   ++..++
T Consensus        97 ~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~dl~~l~~~l~---~~~a~v  169 (375)
T PRK04260         97 NEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA----IFNDLNSVKALVN---KNTAAV  169 (375)
T ss_pred             HHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe----CCCCHHHHHHhcC---CCeEEE
Confidence            9988655544456688999999887542 22221111         11111110    0237889988775   345688


Q ss_pred             EEcCCCCCCCCCCC-HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccccc
Q 017967          234 LHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (363)
Q Consensus       234 ~i~~p~NPTG~~~s-~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~R  312 (363)
                      ++.+++|++|...+ .+.+++|.++|+++|+++|+||+|.++...+   ..+..... ...++   +.||||.++ +|+|
T Consensus       170 i~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g---~~~~~~~~-~~~pd---i~t~sK~l~-~G~~  241 (375)
T PRK04260        170 MLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG---KLYAFEHY-GIEPD---IFTLAKGLA-NGVP  241 (375)
T ss_pred             EECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---chhhhHhh-CCCCC---EEEeccccc-CCcc
Confidence            88999999999754 5779999999999999999999998875442   12221111 22234   338999998 8999


Q ss_pred             ceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          313 IGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       313 vG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +||+  +++ ++    +.+.+.........+.++++|.++...|+.
T Consensus       242 ig~~--~~~-~~----~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~  280 (375)
T PRK04260        242 VGAM--LAK-SS----LGGAFGYGSHGSTFGGNKLSMAAASATLDI  280 (375)
T ss_pred             eEEE--EEc-HH----HHhhcCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            9999  776 55    455554333344556788889988877754

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.61  E-value=1.1e-13  Score=134.77  Aligned_cols=239  Identities=13%  Similarity=0.095  Sum_probs=145.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|......|+  -.+.+.+++.+.++.. ....+.......+|.+.++++. .       .+++++  +++|++
T Consensus        42 ~~lD~~~~~~~~~~Gh--~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~~--~~SGs~  109 (401)
T PRK00854         42 RYLDCLSAYSAVNQGH--CHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALT-G-------SHKVLP--MNSGAE  109 (401)
T ss_pred             EEEEcCcchhhccCCC--CCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhC-C-------CCEEEE--eCCcHH
Confidence            6788766532111111  1345555555544321 1111122334556777777663 1       247777  899999


Q ss_pred             HHHHHHHHHHHh-----C--CC-CEEEEcCCCCcchHHHHhhCCC-------------CeEEEecccCCCCCCCHHHHHH
Q 017967          163 SLRLAAALIERY-----F--PG-AKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       163 al~l~~~l~~~~-----~--~g-d~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      |++.+..++...     .  +| ++|++..-+|.+....+...+.             .+..++       ..|++.+++
T Consensus       110 A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le~  182 (401)
T PRK00854        110 AVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVP-------FGDAEALEA  182 (401)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeC-------CCCHHHHHH
Confidence            999986655433     1  24 6788888777664332222111             222222       247899999


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEE
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~-~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  300 (363)
                      .+.   ++++++++.+|+||||.+++. +.+++|.++|++||+++|+||+|.++...+   ..... .......++++  
T Consensus       183 ~i~---~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g---~~~~~-~~~g~~~D~~~--  253 (401)
T PRK00854        183 AIT---PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTG---KLLAE-EHEGIEADVTL--  253 (401)
T ss_pred             HhC---CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc---hHhHH-hhcCCCCCEEE--
Confidence            886   357788889999999999985 459999999999999999999998876542   11111 11121223333  


Q ss_pred             cCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       301 S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                       ++|.++-..+|+||+  +++ ++    +.+.+........++.+++.|.++...|+.
T Consensus       254 -~~K~l~gg~~~ig~v--~~~-~~----~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~  303 (401)
T PRK00854        254 -IGKALSGGFYPVSAV--LSN-SE----VLGVLKPGQHGSTFGGNPLACAVARAALKV  303 (401)
T ss_pred             -ecccccCCccCeEEE--EEc-HH----HHhcccCCCCCCCCCcCHHHHHHHHHHHHH
Confidence             369987433799999  665 55    444444333344456788888888776654

>PLN02651 cysteine desulfurase

Probab=99.59  E-value=9.1e-14  Score=133.48  Aligned_cols=199  Identities=15%  Similarity=0.034  Sum_probs=133.3

Q ss_pred             cCCCCCCccccHHHHHHHHHHHccCCCC------CCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHH
Q 017967           93 YRTEELQPYVLDVVKKAENLMLERGENK------EYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (363)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~------~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al  164 (363)
                      |.|..+..++++.+.+++.+........      .+..  ..-..++|+.+++++..      ++++|++  |.|+|+++
T Consensus         2 Yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~------~~~~v~~--t~~~t~a~   73 (364)
T PLN02651          2 YLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGA------DPKEIIF--TSGATESN   73 (364)
T ss_pred             cccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--eCCHHHHH
Confidence            3455566677888888887665321100      0000  11145677788887643      2578877  99999998


Q ss_pred             HHHHHHH-H-HhCCCCEEEEcCCCCcchHHH---HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCC
Q 017967          165 RLAAALI-E-RYFPGAKVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (363)
Q Consensus       165 ~l~~~l~-~-~~~~gd~Vlv~~P~y~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~  239 (363)
                      +++...+ . ...+||+|++....|+.+...   ++..|++++.++.+  +++.+|++.+++++++   ++.++++++++
T Consensus        74 ~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~---~t~lv~v~~~~  148 (364)
T PLN02651         74 NLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK--SDGLVDLDELAAAIRP---DTALVSVMAVN  148 (364)
T ss_pred             HHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccC--CCCcCCHHHHHHhcCC---CcEEEEEECCC
Confidence            8774332 1 135899999999777665443   34679999999883  4567899999999973   46788889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEe
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      ||||..++.   ++|.++|+++|+++++|.++..-... .     .    ++..+-.+++.|..|.+|.  ..+|++  +
T Consensus       149 n~tG~~~~l---~~I~~~~~~~g~~~~vD~a~~~g~~~-~-----~----~~~~~~D~~~~s~hK~~gp--~G~g~l--~  211 (364)
T PLN02651        149 NEIGVIQPV---EEIGELCREKKVLFHTDAAQAVGKIP-V-----D----VDDLGVDLMSISGHKIYGP--KGVGAL--Y  211 (364)
T ss_pred             CCceecccH---HHHHHHHHHcCCEEEEEcchhhCCcc-c-----C----cccCCCCEEEechhhhCCC--CceEEE--E
Confidence            999999875   56677799999999999996532211 1     1    1122345777888996543  346888  5


Q ss_pred             eC
Q 017967          320 CS  321 (363)
Q Consensus       320 ~~  321 (363)
                      ..
T Consensus       212 v~  213 (364)
T PLN02651        212 VR  213 (364)
T ss_pred             Ec
Confidence            44

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.59  E-value=2.3e-13  Score=132.32  Aligned_cols=246  Identities=11%  Similarity=0.014  Sum_probs=141.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|.-...-|  +-.+.+.+++.+.++.. ............++++.++++.    +    .+.+.+  +.+|++
T Consensus        32 ~~lD~~~~~~~~~~G--h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~----~~~~~~--~~SGs~   99 (400)
T PTZ00125         32 KYYDFLSAYSAVNQG--HCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF----G----YDKVLP--MNSGAE   99 (400)
T ss_pred             EEEEcccCHhhccCC--cCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC----C----CCEEEE--eCCcHH
Confidence            688887663211111  12455666665554321 1011101223334444554442    1    257766  899999


Q ss_pred             HHHHHHHHHHHh--------CCCCEEEEcCCCCcchHHHHh-hCCCCeE---EEecccC--CCCCCCHHHHHHHHHcCCC
Q 017967          163 SLRLAAALIERY--------FPGAKVLISSPTWGNHKNIFN-DARVPWS---EYRYYDP--KTVGLDFEGMIADIKAAPG  228 (363)
Q Consensus       163 al~l~~~l~~~~--------~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~---~v~~~~~--~~~~~d~~~l~~~l~~~~~  228 (363)
                      |.+.+..+....        ..+++|++.+-+|.+...... ..+....   ..+....  .-...|++.+++.++.  +
T Consensus       100 A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~  177 (400)
T PTZ00125        100 AGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQD--P  177 (400)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCC--C
Confidence            999885544321        134778888888766543332 2221100   0010000  0012389999998862  3


Q ss_pred             CcEEEEEcCCCCCCCCCCC-HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          229 GSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       229 ~~~~~~i~~p~NPTG~~~s-~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                      +..++++.+++||||.+++ .+.+++|.++|++||+++|+||+|.++...+.   .... ......++++   +|||.++
T Consensus       178 ~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~---~~~~-~~~~~~pd~~---~~sK~l~  250 (400)
T PTZ00125        178 NVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK---LLAH-DHEGVKPDIV---LLGKALS  250 (400)
T ss_pred             CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch---hhHH-HhcCCCCCEE---EEccccc
Confidence            5667777888999999996 45599999999999999999999988765421   1111 1111122333   4789998


Q ss_pred             cccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ..++|+||+  +++ ++    +++.+........++.+++.|.++...|+
T Consensus       251 ~g~~~ig~v--~~~-~~----~~~~~~~~~~~~t~~~~~~~~~aa~~~l~  293 (400)
T PTZ00125        251 GGLYPISAV--LAN-DD----VMLVIKPGEHGSTYGGNPLACAVAVEALE  293 (400)
T ss_pred             CCCcCcEEE--EEc-HH----HHhhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence            444599999  665 55    45554433334445677888887765554

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.59  E-value=2.3e-13  Score=130.95  Aligned_cols=175  Identities=13%  Similarity=0.089  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh----CCCCEEEEcCCCCcchHHHHhhCCCCeEEE
Q 017967          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY----FPGAKVLISSPTWGNHKNIFNDARVPWSEY  204 (363)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~----~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v  204 (363)
                      .++++.+++++..      ++.++++  +.|+++++.++...+..+    .+||.|++++++|..+...++..|++++.+
T Consensus        62 ~~~~~~la~~~g~------~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v  133 (373)
T TIGR03812        62 EEVVGSLGNLLHL------PDAYGYI--VSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYA  133 (373)
T ss_pred             HHHHHHHHHHhCC------CCCCeEE--eccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEE
Confidence            5677777777533      2456666  899999977764332221    367999999999999999999999999999


Q ss_pred             ecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC--Cc
Q 017967          205 RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD--ND  282 (363)
Q Consensus       205 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~--~~  282 (363)
                      +.+  .++.+|++.+++.+.+  +...++++ +|+||||...+   +++|.++|+++|+++++|++|..+...-..  ..
T Consensus       134 ~~~--~~~~~d~~~l~~~l~~--~~~~vv~~-~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~  205 (373)
T TIGR03812       134 PLD--EDYTVDVKDVEDLIDD--NTIGIVGI-AGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYN  205 (373)
T ss_pred             eeC--CCCCcCHHHHHHHHhh--CcEEEEEE-CCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCC
Confidence            984  4678999999999874  22234444 47999999876   455667799999999999999765321000  00


Q ss_pred             hhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       283 ~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      ...+. +...+-+ .+..|..| |++++.|.|++  +..+++
T Consensus       206 ~~~~d-~~~~~~d-~~~~s~~K-~~~~~~~~G~~--~~~~~~  242 (373)
T TIGR03812       206 PPPFD-FSLPGVQ-SITIDPHK-MGLSPIPAGGI--LFRSKS  242 (373)
T ss_pred             CCCcc-ccCCCCC-EEEECccc-cCCCcCCceEE--EEeCHH
Confidence            00000 0000112 23456779 77788999987  544566

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.58  E-value=8.8e-14  Score=135.99  Aligned_cols=155  Identities=17%  Similarity=0.103  Sum_probs=117.2

Q ss_pred             chHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCCCeE
Q 017967          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWS  202 (363)
Q Consensus       127 G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~  202 (363)
                      ...+|.+.+|++...        +..++  +.+|++|+.++  +..++.|||+|+++.+.|.....    .+...|++++
T Consensus        64 ~~~~le~~lA~l~g~--------~~al~--~~SG~~Ai~~a--l~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~  131 (427)
T PRK05994         64 TNAVLEERVAALEGG--------TAALA--VASGHAAQFLV--FHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVR  131 (427)
T ss_pred             cHHHHHHHHHHHhCC--------CcEEE--EcCHHHHHHHH--HHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEE
Confidence            457788999998533        23444  79999998877  45567899999999999986443    4567899988


Q ss_pred             EEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCc
Q 017967          203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (363)
Q Consensus       203 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~  282 (363)
                      .++.       .|++.+++++++   +++++++++|+||||.+++   +++|.++|+++|+++|+|+++.......    
T Consensus       132 ~vd~-------~d~~~l~~ai~~---~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~----  194 (427)
T PRK05994        132 WADA-------DDPASFERAITP---RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYLIR----  194 (427)
T ss_pred             EECC-------CCHHHHHHhcCc---CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccccCC----
Confidence            8865       278899988863   4678888999999999986   5677788999999999999986322110    


Q ss_pred             hhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       283 ~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                        +    .+. .-.+++.|++|.+|-+|-.+|.++
T Consensus       195 --p----l~~-gaDivv~S~tK~lgg~~~~~gG~v  222 (427)
T PRK05994        195 --P----IEH-GADIVVHSLTKFLGGHGNSMGGII  222 (427)
T ss_pred             --c----ccc-CCcEEEEcCccccCCCCCcEEEEE
Confidence              1    111 233888999999987777788773

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.54  E-value=9.2e-13  Score=125.61  Aligned_cols=173  Identities=24%  Similarity=0.125  Sum_probs=122.8

Q ss_pred             CCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCC
Q 017967          122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVP  200 (363)
Q Consensus       122 Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~  200 (363)
                      |.......++++++++++..        +++++  +.+|++|+.++  +..+ +.+||+|+++.++|..+...+...|++
T Consensus        14 ~~~~~~~~~~~~~la~~~~~--------~~~~~--~~sgt~al~~~--l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~   81 (352)
T cd00616          14 LTLGPKVREFEKAFAEYLGV--------KYAVA--VSSGTAALHLA--LRALGIGPGDEVIVPSFTFVATANAILLLGAT   81 (352)
T ss_pred             ccCCHHHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHcCCCCCCEEEeCCcchHHHHHHHHHcCCe
Confidence            33445688999999999632        35655  78999998888  3333 469999999999999999999999999


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      ++.++++ ++++.+|++.+++.+++   ++++++++   ||+|...+   +++|.++|+++|+++|+|+++........ 
T Consensus        82 ~~~~~~~-~~~~~~d~~~l~~~i~~---~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~-  150 (352)
T cd00616          82 PVFVDID-PDTYNIDPELIEAAITP---RTKAIIPV---HLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKG-  150 (352)
T ss_pred             EEEEecC-CCcCCcCHHHHHHhcCc---CCeEEEEE---CCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECC-
Confidence            9999984 23688999999998852   35555543   58998765   55667779999999999999763321110 


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCc--cccccccccceEEEEeeCChhHHHHH
Q 017967          281 NDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~S--K~~~l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                        . ..    .. ...+.+.||+  |.++  +-+.|++  ++.+++..+++
T Consensus       151 --~-~~----~~-~~d~~~~S~~~~K~~~--~~~gg~~--~~~~~~~~~~~  189 (352)
T cd00616         151 --R-KV----GT-FGDAGAFSFHPTKNLT--TGEGGAV--VTNDEELAERA  189 (352)
T ss_pred             --E-Ec----cc-CcceeEEcCCCCCCCc--ccCceEE--EECCHHHHHHH
Confidence              0 00    11 1234566665  8774  4457888  77777744443

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.54  E-value=5.5e-13  Score=130.65  Aligned_cols=246  Identities=16%  Similarity=0.124  Sum_probs=153.0

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      ..++|+..|.....-|.  -.+.+.+++.+.++... ..|.+..+..+|.+.+++.+-       ..+++.+  +.+|++
T Consensus        50 ~~~lD~~~g~~~~~lGh--~~p~i~~a~~~~~~~~~-~~~~~~~~~~~la~~L~~~~~-------~~~~v~~--~~sGse  117 (426)
T PRK00062         50 NEYIDYVGSWGPMILGH--AHPEVVEAVIEAAEKGL-SFGAPTELEVELAELVIELVP-------SIEMVRM--VNSGTE  117 (426)
T ss_pred             CEEEEcccchhhhhcCC--CCHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhCC-------CCCEEEE--ecCHHH
Confidence            37899988754222232  24566666665554433 335566677788888877641       1367877  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC--------CCC-----eEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA--------RVP-----WSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~--------G~~-----~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      |++.+..+......+++|+..+++|.++...+...        +..     ...++.....-...|++.+++.+...+++
T Consensus       118 A~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~  197 (426)
T PRK00062        118 ATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDE  197 (426)
T ss_pred             HHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCc
Confidence            99999665544445689999999999876333211        100     00000000000113788998888653344


Q ss_pred             cEEEEEc-CCCCCCCCCCC-HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          230 SFILLHG-CAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       230 ~~~~~i~-~p~NPTG~~~s-~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                      ...+++. .++| +|...+ .+.+++|.++|++||+++|+||+|.++..+.    ......+ ...++   +.+|||.++
T Consensus       198 ~aaiivEpv~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~----~~~~~~~-~~~pD---i~~~gK~l~  268 (426)
T PRK00062        198 IAAVIVEPVAGN-MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL----GGAQGYY-GVTPD---LTTLGKIIG  268 (426)
T ss_pred             EEEEEEeCCcCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC----ccHHHHh-CCCcc---hHhhhhHhh
Confidence            4455544 4455 787776 7889999999999999999999999885542    1122212 22122   368899998


Q ss_pred             cccccceEEEEeeCChhHHHHHHHHHHhh---hccccCCCchHHHHHHhcccc
Q 017967          308 LYAERIGAMNVVCSSSDLAARVKSQLKRL---ARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       .|+++|++  +++ ++    +.+.+...   ......+.+++.+.++...|+
T Consensus       269 -~G~p~ga~--~~~-~~----i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~  313 (426)
T PRK00062        269 -GGLPVGAF--GGR-RE----IMEQLAPLGPVYQAGTLSGNPLAMAAGLATLK  313 (426)
T ss_pred             -CCCcceee--eEH-HH----HHHhhccCCCceecccCcCCHHHHHHHHHHHH
Confidence             89999999  665 55    45544311   122334677777877766555

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.1e-12  Score=126.69  Aligned_cols=196  Identities=18%  Similarity=0.133  Sum_probs=141.0

Q ss_pred             CccccHHHHHHHHHHHcc-CCCC---CCCC----CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHH
Q 017967           99 QPYVLDVVKKAENLMLER-GENK---EYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAAL  170 (363)
Q Consensus        99 ~~~~~~~v~~a~~~~~~~-~~~~---~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l  170 (363)
                      ....+..|.+++.+.... ..+.   .|..    ..-..+.|+.+|++++...     .++|++  |.|+|.++++++..
T Consensus        31 ~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~-----~~eIvf--t~~tT~aln~va~~  103 (405)
T COG0520          31 TSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADS-----SDEIVF--TRGTTEALNLVARG  103 (405)
T ss_pred             cccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCC-----CCeEEE--eCChhHHHHHHHHH
Confidence            344677777777665421 1111   1211    1245678999999975541     378988  99999999999765


Q ss_pred             HHH-hCCCCEEEEcCCCCcch----HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCC
Q 017967          171 IER-YFPGAKVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID  245 (363)
Q Consensus       171 ~~~-~~~gd~Vlv~~P~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~  245 (363)
                      +.. +.+||.|++..--|...    ....++.|++++.+|++  +++.++.+.+++.++   ++++++.++.-+|-||.+
T Consensus       104 l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~--~~g~~~~~~~~~~i~---~~Tklvais~vSn~tG~~  178 (405)
T COG0520         104 LGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD--DDGLLDLDALEKLIT---PKTKLVALSHVSNVTGTV  178 (405)
T ss_pred             hhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC--CCCCcCHHHHHHhcC---CCceEEEEECcccccccc
Confidence            543 57999999999877544    44556789999999985  567899999999776   468899999999999998


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcc-ccccccccceEEEEeeCChh
Q 017967          246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK-NLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       246 ~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~l~G~RvG~i~~v~~~~~  324 (363)
                      .+   +++|+++|+++|.++++|.+ +.......     .+    +..+-.+++.|--| .+|..|  +|.+  ... ++
T Consensus       179 ~p---v~~I~~la~~~ga~v~VDaa-q~~~h~~i-----dv----~~l~~Df~afsgHKwl~gP~G--iGvL--y~r-~~  240 (405)
T COG0520         179 NP---VKEIAELAHEHGALVLVDAA-QAAGHLPI-----DV----QELGCDFLAFSGHKWLLGPTG--IGVL--YVR-KE  240 (405)
T ss_pred             ch---HHHHHHHHHHcCCEEEEECc-cccCccCC-----Cc----hhcCCCEEEEcccccccCCCc--eEEE--EEc-hH
Confidence            76   56677789999999999999 33332211     11    23356688999999 666446  6888  665 55

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.53  E-value=9.6e-13  Score=130.69  Aligned_cols=204  Identities=13%  Similarity=0.069  Sum_probs=136.2

Q ss_pred             EeeccccCCCCCCccccHHHHHHHHHHHccCCCCCC---CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY---LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y---~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      -++.|.+.     ...++.+.+++.........+.|   ...+|..+++.++.+++....|.+    ++.+..+.|+++.
T Consensus        72 ~~g~G~~~-----~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~----~~~l~~~~GA~a~  142 (481)
T PRK04366         72 FYPLGSCT-----MKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD----AVTLQPAAGAHGE  142 (481)
T ss_pred             eecCcccC-----CCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC----ceEEEeCcHHHHH
Confidence            46667652     22344555555443211223567   346789999999998887776653    3333224555555


Q ss_pred             HHHHHHHH-HHhCCCC----EEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCC
Q 017967          164 LRLAAALI-ERYFPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (363)
Q Consensus       164 l~l~~~l~-~~~~~gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p  238 (363)
                      +..+..+. ....+||    +|+++.|.|+.+...++..|++++.++++  .++.+|++.|++.+.+   +++++++++|
T Consensus       143 ~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~--~~~~~D~e~L~~~i~~---~t~~V~v~~P  217 (481)
T PRK04366        143 LTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSN--EDGLVDLEALKAAVGE---DTAALMLTNP  217 (481)
T ss_pred             HHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecC--CCCCcCHHHHHhhccc---CCeEEEEeCC
Confidence            43332111 2245776    99999999999999999999999999983  4578999999998863   4667777898


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc----cccce
Q 017967          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY----AERIG  314 (363)
Q Consensus       239 ~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~----G~RvG  314 (363)
                      | |||..  ..++++|+++|+++|.++++|.++..-..+..     ..   .+. .-.+++++..|.|+.|    |-.+|
T Consensus       218 n-~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~-----~~---~~~-GaD~~~~~~hK~l~~P~g~Ggp~~G  285 (481)
T PRK04366        218 N-TLGLF--ERNILEIAEIVHEAGGLLYYDGANLNAILGKA-----RP---GDM-GFDVVHLNLHKTFSTPHGGGGPGSG  285 (481)
T ss_pred             C-Ccccc--chHHHHHHHHHHHcCCEEEEEecChhhhcccC-----Cc---ccc-CCCEEEEechhhcCCCCCCCCCCee
Confidence            7 99954  45799999999999999999999642111110     00   011 2356778888988744    45578


Q ss_pred             EE
Q 017967          315 AM  316 (363)
Q Consensus       315 ~i  316 (363)
                      ++
T Consensus       286 ~l  287 (481)
T PRK04366        286 PV  287 (481)
T ss_pred             ee
Confidence            87

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.52  E-value=2e-12  Score=126.99  Aligned_cols=256  Identities=16%  Similarity=0.163  Sum_probs=146.4

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      .+++ .++|+..|.-...-|+  -.+.+.+++.+.+....  .+.......+.+..+|+.+......  .-+++.+  ++
T Consensus        38 ~dG~-~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~~~--~~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f--~~  108 (443)
T PRK08360         38 IEGN-EYIDFLSDAAVQNVGH--NNPRVVKAIKEQTDKLI--HYTPIYGFPVEPLLLAEKLIEIAPG--DNPKVSF--GL  108 (443)
T ss_pred             CCCC-EEEEccccHhhcccCC--CCHHHHHHHHHHHHhcc--CccccccCcHHHHHHHHHHHHhCCC--CCCEEEE--cC
Confidence            3443 7888877742222222  24556666655553311  1111111123334444444332211  1257877  99


Q ss_pred             chhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HHhhCCC------------CeEEEecccCCC--CC--------CC
Q 017967          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDARV------------PWSEYRYYDPKT--VG--------LD  215 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~-~~~~~G~------------~~~~v~~~~~~~--~~--------~d  215 (363)
                      +|++|.+.+..+...+....+|+...-+|.+... .+...|.            .+..+|+.+...  ++        -+
T Consensus       109 sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (443)
T PRK08360        109 SGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMEC  188 (443)
T ss_pred             CHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHH
Confidence            9999999997765555444678777777755431 1111111            123333311100  11        12


Q ss_pred             HHHHHHHHHc--CCCCcEEEEEcCCCCCCCCCCC-HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc
Q 017967          216 FEGMIADIKA--APGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (363)
Q Consensus       216 ~~~l~~~l~~--~~~~~~~~~i~~p~NPTG~~~s-~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  292 (363)
                      ++.+++.+..  .+++...+++..-+||+|.+++ .+.+++|.++|+++|+++|+||+|.+|...+   .......+ +.
T Consensus       189 ~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G---~~~a~~~~-~~  264 (443)
T PRK08360        189 VEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTG---KWFAIEHF-GV  264 (443)
T ss_pred             HHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---cchhhhhc-CC
Confidence            4456666653  1234566665556799999888 5579999999999999999999999986543   12222222 22


Q ss_pred             CCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       293 ~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      .++++   +|||.++ +|+|+||+  +++ ++    +++.+.........+.++++|.++...|+.
T Consensus       265 ~pDii---tlsK~l~-~G~pigav--~~~-~~----i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~  319 (443)
T PRK08360        265 EPDII---TLGKPLG-GGLPISAT--IGR-AE----IMDSLPPLAHAFTLSGNPVASAAALAVIEE  319 (443)
T ss_pred             CCCEE---Eeccccc-CCceeEEE--EEc-HH----HHhhhcCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            34443   6799999 99999999  665 66    455554333334456677778877666554

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.51  E-value=2.6e-12  Score=125.61  Aligned_cols=156  Identities=21%  Similarity=0.179  Sum_probs=118.7

Q ss_pred             cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCe
Q 017967          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPW  201 (363)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~  201 (363)
                      .-..+|++.+|++....        ..++  |.+|++|+.++  +..++.+||+|+++...|......+    ...|+++
T Consensus        64 p~~~~le~~lA~l~g~~--------~av~--~sSGt~Al~~a--l~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v  131 (433)
T PRK08134         64 PTVAVLEERVAALEGGV--------GAIA--TASGQAALHLA--IATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIET  131 (433)
T ss_pred             hHHHHHHHHHHHHhCCC--------cEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEE
Confidence            34688999999996432        3455  89999999988  4455789999999999998665444    5689999


Q ss_pred             EEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCC
Q 017967          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (363)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~  281 (363)
                      +.++.+       |++.+++++++   +++++++.+|+||||.+.+   +++|.++|+++|+++|+|.++..-....   
T Consensus       132 ~~vd~~-------d~~~l~~~i~~---~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~~---  195 (433)
T PRK08134        132 TFVKPG-------DIDGWRAAIRP---NTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLLR---  195 (433)
T ss_pred             EEECCC-------CHHHHHHhcCC---CCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence            888762       78999999873   5667788899999999987   5666777999999999999975322211   


Q ss_pred             chhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       282 ~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                         +.    +. .-.+++.|.+|.+|-+|-.+|.++
T Consensus       196 ---pl----~~-GaD~vv~S~tK~l~g~g~~~gG~v  223 (433)
T PRK08134        196 ---PF----EH-GADLVYHSATKFLGGHGTAIGGVL  223 (433)
T ss_pred             ---ch----hc-CCCEEEeccccccCCCCCceEEEE
Confidence               11    11 234888999999987887788873

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.50  E-value=2.8e-12  Score=125.35  Aligned_cols=188  Identities=11%  Similarity=0.082  Sum_probs=120.6

Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCC-------------CeEEEecccCCCCCC-
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARV-------------PWSEYRYYDPKTVGL-  214 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~-------------~~~~v~~~~~~~~~~-  214 (363)
                      +++.+  +.+|++|.+.+..+...+....+|+...-+|.+..... ...|.             .+..+|+... ..++ 
T Consensus       102 ~~~~f--~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~-~~~~~  178 (421)
T PRK09792        102 AKTAF--FTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSD-LHGIS  178 (421)
T ss_pred             ceEEE--eCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc-ccccc
Confidence            47766  88999999999776554433367888888886653211 11111             1233333111 1122 


Q ss_pred             ---CHHHHHHHHHc--CCCCcEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH
Q 017967          215 ---DFEGMIADIKA--APGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (363)
Q Consensus       215 ---d~~~l~~~l~~--~~~~~~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  288 (363)
                         +++.+++.+.+  .+++...+++..-++|+|..+ +.+.+++|.++|+++|+++|+||+|.+|...+   ..+....
T Consensus       179 ~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~~~  255 (421)
T PRK09792        179 TQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG---KLFAMDH  255 (421)
T ss_pred             HHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHh
Confidence               24777777763  123445555555699999876 89999999999999999999999999996643   2233333


Q ss_pred             HHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcc
Q 017967          289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSS  355 (363)
Q Consensus       289 ~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~  355 (363)
                      +... ++   +.+|||.++ +|+|+||+  +++ ++    +.+.+........++.++++|.++...
T Consensus       256 ~~~~-pD---i~t~gK~l~-~G~pigav--~~~-~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~  310 (421)
T PRK09792        256 YADK-PD---LMTMAKSLA-GGMPLSGV--VGN-AN----IMDAPAPGGLGGTYAGNPLAVAAAHAV  310 (421)
T ss_pred             cCCC-Cc---EEEeehhhc-CCCceEEE--EEc-HH----HHhccCCCCcCCCCCCCHHHHHHHHHH
Confidence            3112 22   578999998 99999999  665 55    444443223334456778888854433

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.50  E-value=7.2e-13  Score=124.43  Aligned_cols=195  Identities=16%  Similarity=0.086  Sum_probs=144.0

Q ss_pred             cCCCCCCccccHHHHHHHHHHHcc-----CCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHH
Q 017967           93 YRTEELQPYVLDVVKKAENLMLER-----GENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (363)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (363)
                      |.|.+..+++.+.+.+++...+..     ...+.|+.  ...+.+.|+.+|+.+...      +++|++  |.|||++.+
T Consensus         4 YlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~------~~eIiF--TSG~TEsnN   75 (386)
T COG1104           4 YLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGAD------PEEIIF--TSGATESNN   75 (386)
T ss_pred             cccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--ecCCcHHHH
Confidence            556677777888888887766532     22344432  344678889999997554      689988  999999999


Q ss_pred             HHHHHHH--HhC----CCCEEEEcCCCCcchHHHHhhC---CCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEc
Q 017967          166 LAAALIE--RYF----PGAKVLISSPTWGNHKNIFNDA---RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (363)
Q Consensus       166 l~~~l~~--~~~----~gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~  236 (363)
                      ++  +..  ...    .|.+|+++.--++...+.++..   |++|.++|++  .++.+|+++|+++++   +++.++.+.
T Consensus        76 la--I~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~--~~G~v~~e~L~~al~---~~T~LVSim  148 (386)
T COG1104          76 LA--IKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVD--SNGLVDLEQLEEALR---PDTILVSIM  148 (386)
T ss_pred             HH--HHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCC--CCCeEcHHHHHHhcC---CCceEEEEE
Confidence            88  443  221    4689999998888887777644   9999999994  467899999999998   468899999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      ..||-||++++.++   |.++|+++++++.+|.+ +.+..-+.     .+    +...-.+...|-.|.+|..|  +|.+
T Consensus       149 ~aNnE~G~IQpI~e---i~~i~k~~~i~fHvDAv-Qa~Gkipi-----~~----~~~~vD~ls~SaHK~~GpkG--iGaL  213 (386)
T COG1104         149 HANNETGTIQPIAE---IGEICKERGILFHVDAV-QAVGKIPI-----DL----EELGVDLLSFSAHKFGGPKG--IGAL  213 (386)
T ss_pred             ecccCeeecccHHH---HHHHHHHcCCeEEEehh-hhcCceec-----cc----cccCcceEEeehhhccCCCc--eEEE
Confidence            99999999988665   55569999999999999 55543211     11    11113455667789999888  6888


Q ss_pred             E
Q 017967          317 N  317 (363)
Q Consensus       317 ~  317 (363)
                      +
T Consensus       214 y  214 (386)
T COG1104         214 Y  214 (386)
T ss_pred             E
Confidence            4

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.50  E-value=3e-12  Score=124.47  Aligned_cols=252  Identities=13%  Similarity=0.022  Sum_probs=149.2

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      +.+++ .++|+..|.-...-|+  -.+.+.+++.+.++... + +.... ..+....+++.+......   .+++.+  +
T Consensus        36 D~dG~-~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~-~-~~~~~-~~~~~~~la~~L~~~~~~---~~~v~f--~  104 (408)
T PRK04612         36 DDQGR-EYLDLAAGIAVCGLGH--NDPDLVAALTEQAGKLW-H-TSNVF-YSAPPLKLAEELVTASRF---AEKVFL--C  104 (408)
T ss_pred             ECCCC-EEEEcCccHhhccCCC--CCHHHHHHHHHHHHhcc-c-ccccc-CCHHHHHHHHHHHhhCCC---CCEEEE--c
Confidence            33443 7888876642222222  24455555555443211 1 11111 122334455554432211   268877  9


Q ss_pred             cchhHHHHHHHHHHHHhC------CC-CEEEEcCCCCcchHHHHh-hCCCCeEE---EecccC--CCCCCCHHHHHHHHH
Q 017967          158 LSGTGSLRLAAALIERYF------PG-AKVLISSPTWGNHKNIFN-DARVPWSE---YRYYDP--KTVGLDFEGMIADIK  224 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~------~g-d~Vlv~~P~y~~~~~~~~-~~G~~~~~---v~~~~~--~~~~~d~~~l~~~l~  224 (363)
                      .+|++|.+.+..+...+.      ++ .+|+...-+|.+...... ..|.....   .+..+.  .-...|++.+++.+.
T Consensus       105 ~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~  184 (408)
T PRK04612        105 NSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMA  184 (408)
T ss_pred             CchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhC
Confidence            999999999977655541      22 368888888866643222 22211000   000000  001237888888885


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCC--HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcC
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPT--PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s--~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~  302 (363)
                      .   ..+..++..|.+++|.+++  .+.+++|.++|+++|+++|+||+|.+|...+   .....    ...+.+..+.+|
T Consensus       185 ~---~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~a~----~~~~~~pdi~t~  254 (408)
T PRK04612        185 G---GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG---TLFAH----WQEQVTPDIVTL  254 (408)
T ss_pred             C---CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC---chhhh----hhcCCCCCEEEE
Confidence            2   3455556788899987766  5689999999999999999999999886543   11111    122446678899


Q ss_pred             ccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       303 SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ||.++ +|+|+||+  +++ ++    +.+.+........++.+++++.++...|+.
T Consensus       255 ~K~l~-~G~piga~--~~~-~~----~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~  302 (408)
T PRK04612        255 AKALG-GGFPIGAM--LAG-PK----VAETMQFGAHGTTFGGNPLAAAVARVALRK  302 (408)
T ss_pred             cchhc-CCCceEEE--EEC-HH----HHhhhcCCCcCCCCCCCHHHHHHHHHHHHH
Confidence            99998 89999999  666 55    444444333344456778888888776654

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.50  E-value=2.9e-12  Score=123.35  Aligned_cols=203  Identities=12%  Similarity=-0.014  Sum_probs=127.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc---------CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER---------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~---------~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      ..++|+...|.+...++.+.+.+.+++.....+         +...-++...-+.++++.+|+++...       ..+++
T Consensus         5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~-------~~l~~   77 (370)
T PRK05937          5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAP-------EAFIV   77 (370)
T ss_pred             ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-------eEEEE
Confidence            689999999998888887888888887665311         00011112334678999999997442       33444


Q ss_pred             EeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC---CCcE
Q 017967          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSF  231 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~  231 (363)
                        +.|. .+...+  +.....+||.|++..-.+......++......+.++       ..|++.+++.++...   ++++
T Consensus        78 --~sG~-~a~~~~--~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~~  145 (370)
T PRK05937         78 --PSGY-MANLGL--CAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFR-------HNDLDHLESLLESCRQRSFGRI  145 (370)
T ss_pred             --CChH-HHHHHH--HHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHhhhccCCCcE
Confidence              5554 443222  222234777777766666666665554433333332       368999999887421   2456


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccc
Q 017967          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~  311 (363)
                      ++++++++|+||...+.   ++|.++|+++|+++++||++..-..+.   +...........+..+.+.||||.+|..|.
T Consensus       146 ~v~v~~v~s~~G~i~pl---~eI~~l~~~~~~~livDea~~~G~~g~---~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~  219 (370)
T PRK05937        146 FIFVCSVYSFKGTLAPL---EQIIALSKKYHAHLIVDEAHAMGIFGD---DGKGFCHSLGYENFYAVLVTYSKALGSMGA  219 (370)
T ss_pred             EEEEecCCCCCCCccCH---HHHHHHHHHcCCEEEEECCccccccCC---CCCchHHhhCCCCCcEEEEechhhhhcCce
Confidence            77789999999999985   456667999999999999987533321   111111111111223568999999997773

>PLN00144 acetylornithine transaminase

Probab=99.49  E-value=1.8e-12  Score=125.18  Aligned_cols=236  Identities=13%  Similarity=0.017  Sum_probs=138.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.-...-|+-  .+.+.+++.+.+....   +.......+....+|+.+.....    .+++.+  +.+|++|
T Consensus        16 ~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~---~~~~~~~~~~~~~la~~l~~~~~----~~~v~f--~~sGseA   84 (382)
T PLN00144         16 EYLDMAAGIAVNALGHG--DPDWVKAVAEQAGTLA---HVSNVYHTIPQVELAKRLVASSF----ADRVFF--CNSGTEA   84 (382)
T ss_pred             EEEECCcCHHhccCCCC--CHHHHHHHHHHHHhcC---CccccccCHHHHHHHHHHHhcCC----CCeEEE--eCCcHHH
Confidence            67888666421112222  3455555555443211   11111112233444444433211    358877  9999999


Q ss_pred             HHHHHHHHHHhCC-------------CCEEEEcCCCCcchHHHHhh-CCCC------------eEEEecccCCCCCCCHH
Q 017967          164 LRLAAALIERYFP-------------GAKVLISSPTWGNHKNIFND-ARVP------------WSEYRYYDPKTVGLDFE  217 (363)
Q Consensus       164 l~l~~~l~~~~~~-------------gd~Vlv~~P~y~~~~~~~~~-~G~~------------~~~v~~~~~~~~~~d~~  217 (363)
                      .+.+..+......             ..+|+...-+|.+....... .+-.            +..+|.       .|++
T Consensus        85 ~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~  157 (382)
T PLN00144         85 NEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY-------GNLE  157 (382)
T ss_pred             HHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC-------CCHH
Confidence            9998766544321             24688888888666433221 1111            112221       2688


Q ss_pred             HHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHH--HHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCe
Q 017967          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ--WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (363)
Q Consensus       218 ~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~--~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~  295 (363)
                      .+++.+.. .+...+++-+. +|| |.+++.+.  +++|.++|++||+++|+||+|.+|...+.   .++. ......++
T Consensus       158 ~l~~~~~~-~~~aavi~eP~-q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~---~~~~-~~~~~~PD  230 (382)
T PLN00144        158 AARKLIQK-GKTAAVFVEPV-QGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGY---LWAH-EAYGVEPD  230 (382)
T ss_pred             HHHHhcCC-CCeEEEEEccc-cCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch---Hhhh-hhcCCCCC
Confidence            89888753 22234455444 899 55555555  99999999999999999999999865431   2221 11122233


Q ss_pred             EEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcc
Q 017967          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSS  355 (363)
Q Consensus       296 vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~  355 (363)
                         +.+|||.++ +|+|+||+  +++ ++    +.+.+........++.+++++.++...
T Consensus       231 ---i~t~sK~l~-~G~pig~v--~~~-~~----~~~~~~~~~~~~T~~~~pl~~aaa~a~  279 (382)
T PLN00144        231 ---IMTLAKPLA-GGLPIGAV--LVT-EK----VASAINPGDHGSTFAGGPLVCNAALAV  279 (382)
T ss_pred             ---EEEeccccc-CCcceEEE--EEc-HH----HHhccCCCCCCCCCCCCHHHHHHHHHH
Confidence               788999998 89999999  776 55    455444333444557888888888733

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.49  E-value=4.2e-12  Score=123.39  Aligned_cols=236  Identities=14%  Similarity=0.124  Sum_probs=139.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.-.+.-|.  -.|.+.+++.+.++...  ...| +..-..+|.+.++++.    +    .+++.+  +++|+
T Consensus        36 ~ylD~~~g~~~~~lGh--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~la~~L~~~~----~----~~~~~f--~~SGs  102 (397)
T TIGR03246        36 EYIDFAGGIAVNALGH--AHPELVKALIEQADKLWHIGNGY-TNEPVLRLAKKLVDAT----F----ADKVFF--CNSGA  102 (397)
T ss_pred             EEEECCcCHhhccCCC--CCHHHHHHHHHHHHhcccccCcc-CCHHHHHHHHHHHhhC----C----CCEEEE--eCCcH
Confidence            7889877632122333  24556666555443211  1112 1222345555555542    1    257877  99999


Q ss_pred             HHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHH-HHhhCCC------------CeEEEecccCCCCCCCHHHHHHH
Q 017967          162 GSLRLAAALIERYF-----PG-AKVLISSPTWGNHKN-IFNDARV------------PWSEYRYYDPKTVGLDFEGMIAD  222 (363)
Q Consensus       162 ~al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~-~~~~~G~------------~~~~v~~~~~~~~~~d~~~l~~~  222 (363)
                      +|.+.+..+...+.     +| ++|+..+-+|.+... .+...|.            .+..++       ..|++.+++.
T Consensus       103 eA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~  175 (397)
T TIGR03246       103 EANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAP-------YNDLAAAKAL  175 (397)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeC-------CCCHHHHHHH
Confidence            99999976654442     33 567777777766532 2222221            111222       2378999988


Q ss_pred             HHcCCCCcEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          223 IKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       223 l~~~~~~~~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      +.   ++..++++...+++.|... +.+.+++|.++|++||+++|.||+|.++...+   .......+ .-..++   -+
T Consensus       176 l~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G---~~~a~~~~-gv~pDi---~t  245 (397)
T TIGR03246       176 IS---DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG---ELYAYMHY-GVTPDI---LT  245 (397)
T ss_pred             hc---cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccc---cchhhhhc-CCCCCE---EE
Confidence            86   2455666554444455443 89999999999999999999999998885432   12221111 112233   37


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |||.+| .|+++||+  +++ ++    +.+.+........++.+++++.++...|+
T Consensus       246 ~~K~lg-gG~pigav--~~~-~~----i~~~~~~~~~~~t~~~~p~~~aaa~a~l~  293 (397)
T TIGR03246       246 SAKALG-GGFPIGAM--LTT-TE----IAAHLKVGTHGTTYGGNPLACAVAGKVLD  293 (397)
T ss_pred             eehhhh-CCcceeEE--EEc-HH----HHHhccCCCcCCCCCCCHHHHHHHHHHHH
Confidence            899998 89999999  665 55    45545433233334566777777765554

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.48  E-value=7.9e-12  Score=121.65  Aligned_cols=243  Identities=11%  Similarity=0.109  Sum_probs=146.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      ..+|+..|......|  +-.+.+.+++.+.++. ..........-..++.+.+++++ +       .+++.+  +++|++
T Consensus        38 ~~lD~~s~~~~~~~G--h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~~--~~SGs~  105 (401)
T TIGR01885        38 RYLDFLSAYSAVNQG--HCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLF-G-------YDKVLP--MNTGAE  105 (401)
T ss_pred             EEEEcccCHhhccCC--CCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhc-C-------CCEEEE--eCccHH
Confidence            688887763211111  1245666666555432 11011112233456666776663 2       257777  999999


Q ss_pred             HHHHHHHHHHHh-------CCC-CEEEEcCCCCcch-HHHHhhCC---------C---CeEEEecccCCCCCCCHHHHHH
Q 017967          163 SLRLAAALIERY-------FPG-AKVLISSPTWGNH-KNIFNDAR---------V---PWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       163 al~l~~~l~~~~-------~~g-d~Vlv~~P~y~~~-~~~~~~~G---------~---~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      |.+.+..+....       .+| +.|+...-.|.+. ...+...|         .   .+..++.       .|++.+++
T Consensus       106 A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~  178 (401)
T TIGR01885       106 AVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEALEE  178 (401)
T ss_pred             HHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHHHHH
Confidence            999886554333       133 5677777777643 33332221         1   1222322       26899999


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHH-HHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEE
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPE-QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~-~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  300 (363)
                      .+++.+++..++++...++++|...+.+ .+++|.++|++||+++|+||+|.++...+   ..... ......++++   
T Consensus       179 ~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G---~~~~~-~~~~~~~di~---  251 (401)
T TIGR01885       179 ALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG---KLLCV-DHENVKPDIV---  251 (401)
T ss_pred             HHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHH-hhcCCCCCEE---
Confidence            8875444566777778899999998654 69999999999999999999998876542   11121 2212233444   


Q ss_pred             cCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       301 S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      .|||.++..|+|+||+  +++ ++    +++.+.........+.+++++.++...|+..
T Consensus       252 ~~gK~l~~g~~~ig~v--~~~-~~----i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i  303 (401)
T TIGR01885       252 LLGKALSGGVYPVSAV--LAD-DD----VMLTIKPGEHGSTYGGNPLACAVAVAALEVL  303 (401)
T ss_pred             EeeccccCCCCCcEEE--EEc-HH----HHhhccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            3679998666999999  665 66    4444443223334456788888877666543

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.48  E-value=9.6e-12  Score=121.58  Aligned_cols=162  Identities=18%  Similarity=0.129  Sum_probs=116.2

Q ss_pred             CCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----H
Q 017967          121 EYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----F  194 (363)
Q Consensus       121 ~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~  194 (363)
                      .|..  ......|.+.+|++...        +..++  +.+|++|+.++  +..++.+||+|++....|.+....    +
T Consensus        62 ~Ysr~~~p~~~~Le~~lA~l~g~--------~~av~--~sSG~aAi~~a--l~all~~Gd~Vv~~~~~y~~t~~~~~~~l  129 (436)
T PRK07812         62 IYTRIMNPTQDVVEQRIAALEGG--------VAALL--LASGQAAETFA--ILNLAGAGDHIVSSPRLYGGTYNLFHYTL  129 (436)
T ss_pred             cccCCCCchHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH--HHHHhCCCCEEEEeCCcchHHHHHHHHHh
Confidence            3543  34457889999988533        23444  78999998877  566678999999999888776543    3


Q ss_pred             hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCC
Q 017967          195 NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF  274 (363)
Q Consensus       195 ~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~  274 (363)
                      ...|++++.++  +.    .|++.++++++   ++++++++.+|+||+|.+.+.   ++|.++|+++|+++|+|+++..-
T Consensus       130 ~~~Gi~v~~vd--d~----~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~Dl---~~I~~la~~~gi~liVD~t~a~~  197 (436)
T PRK07812        130 PKLGIEVSFVE--DP----DDLDAWRAAVR---PNTKAFFAETISNPQIDVLDI---PGVAEVAHEAGVPLIVDNTIATP  197 (436)
T ss_pred             hcCeEEEEEEC--CC----CCHHHHHHhCC---CCCeEEEEECCCCCCCeecCH---HHHHHHHHHcCCEEEEECCCccc
Confidence            45788777774  11    38899998886   346788889999999998865   55666799999999999986532


Q ss_pred             cCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          275 ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                      ...      .+    ++.+.+ +++.|++|.+|-.|--+|+++
T Consensus       198 ~~~------~p----l~~GaD-ivv~S~tK~lgg~G~~i~G~v  229 (436)
T PRK07812        198 YLI------RP----LEHGAD-IVVHSATKYLGGHGTAIAGVI  229 (436)
T ss_pred             ccC------Cc----hhcCCC-EEEEecccccCCCCCeEEEEE
Confidence            211      01    122233 566999999987776688873

>PLN02624 ornithine-delta-aminotransferase

Probab=99.48  E-value=8e-12  Score=123.87  Aligned_cols=243  Identities=12%  Similarity=0.099  Sum_probs=147.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|.-....|+  -.+.+.+++.+.++.. ....+.......+|.+.+++++ .       .+++.+  +++|++
T Consensus        76 ~ylD~~sg~~~~~~Gh--~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~-~-------~~~~~f--~~SGse  143 (474)
T PLN02624         76 KYLDFLSAYSAVNQGH--CHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMF-G-------YDMVLP--MNTGAE  143 (474)
T ss_pred             EEEEcccchhcccCCC--CCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhc-C-------CCeEEE--eCChHH
Confidence            7888876632111121  2455555655544321 1011112344566777777763 1       257777  899999


Q ss_pred             HHHHHHHHHHHhC------C-CC-EEEEcCCCCcchHHHH-hhCCC------------CeEEEecccCCCCCCCHHHHHH
Q 017967          163 SLRLAAALIERYF------P-GA-KVLISSPTWGNHKNIF-NDARV------------PWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       163 al~l~~~l~~~~~------~-gd-~Vlv~~P~y~~~~~~~-~~~G~------------~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      |.+.+..+.....      + ++ .|+...-+|.+..... ...|-            .+..++.       .|++.+++
T Consensus       144 A~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~  216 (474)
T PLN02624        144 GVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-------GDLDALEK  216 (474)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-------CCHHHHHH
Confidence            9999866554431      1 33 4666666665542221 11110            1122222       26889999


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHHH-HHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEE
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~~-~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  300 (363)
                      .++..+.+..++++..++|++|.+++.++ +++|.++|++||+++|+||+|.++...+   ..... ......+++++  
T Consensus       217 ~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG---~~~a~-~~~~i~pDiv~--  290 (474)
T PLN02624        217 IFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTG---KMLAC-DWEEVRPDVVI--  290 (474)
T ss_pred             HHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCc---chhhH-HhcCCCCCEEE--
Confidence            88765556778888999999999988775 9999999999999999999998875442   11111 11122233333  


Q ss_pred             cCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       301 S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                       |||.+|..++++|++  +.+ ++    +...+........++.+++.+.++...|+..
T Consensus       291 -lsK~lggG~~pigav--~~~-~~----i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l  341 (474)
T PLN02624        291 -LGKALGGGVIPVSAV--LAD-KD----VMLCIKPGEHGSTFGGNPLASAVAMAALQVV  341 (474)
T ss_pred             -ecccccCCCCcceee--eec-HH----HHhHhccCCcCCCCCCCHHHHHHHHHHHHHH
Confidence             689999766999999  664 55    4444443333334467778888877666543

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.47  E-value=8e-12  Score=120.25  Aligned_cols=190  Identities=12%  Similarity=0.021  Sum_probs=135.1

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~  200 (363)
                      .+....|.+.+|++- +-       +..++  +.+|++|+..+  ++.++.+||+|+++...|.+....+    ++.|++
T Consensus        61 nPt~~~le~~la~LE-g~-------~~a~~--~~SGmaAi~~~--~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~  128 (395)
T PRK08114         61 TLTHFSLQEAMCELE-GG-------AGCAL--YPCGAAAVANA--ILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT  128 (395)
T ss_pred             ChhHHHHHHHHHHHh-CC-------CeEEE--EhHHHHHHHHH--HHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE
Confidence            445677888898873 31       45555  78999999887  5666889999999999997776654    678999


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhc--CCeEEEecCCCCCcCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGS  278 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~--~~~ii~De~y~~~~~~~  278 (363)
                      +..++.       .|.+.+++++++   +++++++-+|.||||.+.+   +++|+++|+++  |+++++|.++..-..-+
T Consensus       129 v~~vd~-------~d~~~l~~~l~~---~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~  195 (395)
T PRK08114        129 TTWFDP-------LIGADIAKLIQP---NTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVLFK  195 (395)
T ss_pred             EEEECC-------CCHHHHHHhcCC---CceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccccC
Confidence            888763       367889998873   5678888999999998875   56677778887  49999999975432211


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                            +    .+ ..-.++++|.+|.++-.| .-.|.+   +.+++..    +.+...........+++...++.+.|+
T Consensus       196 ------p----l~-~GaDivv~S~tKyl~Ghsdv~~G~v---~~~~~~~----~~l~~~~~~~G~~~~p~~a~l~~rgl~  257 (395)
T PRK08114        196 ------A----LD-FGIDISIQAGTKYLVGHSDAMIGTA---VANARCW----EQLRENSYLMGQMVDADTAYMTSRGLR  257 (395)
T ss_pred             ------H----HH-cCCcEEEEcCcccccCCCcceeEEE---EcCHHHH----HHHHHHHHhccCCCCHHHHHHHHcCCC
Confidence                  1    11 134588999999886555 456644   4445533    333333334566888888888877665

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.46  E-value=3.1e-12  Score=120.74  Aligned_cols=202  Identities=15%  Similarity=0.082  Sum_probs=146.0

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHH----ccCC-C-CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLML----ERGE-N-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~----~~~~-~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      .+.+.|..+..      .+..+.|.+++....    ...+ . +.+.+..+..+.|+.+|++++..      +.+|++  
T Consensus        42 ~~~vyld~~at------~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd------~~dIiF--  107 (428)
T KOG1549|consen   42 TRPVYLDNQAT------GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINAD------PSDIVF--  107 (428)
T ss_pred             CccEEEecCcC------CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCC------CCcEEE--
Confidence            36777776653      334455555554433    2222 1 23334556889999999998765      567988  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCC----EEEEcCCCCcchHHH---HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          157 GLSGTGSLRLAAALIERYFPGA----KVLISSPTWGNHKNI---FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd----~Vlv~~P~y~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      |.|+|++++++..-.. ...+|    .|++..-.|+.....   ++..|++++.+|+.  +++-.|++.|++.++   ++
T Consensus       108 ts~ATEs~Nlvl~~v~-~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~~~d~~~~~~~i~---~~  181 (428)
T KOG1549|consen  108 TSGATESNNLVLKGVA-RFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSGLVDISKLREAIR---SK  181 (428)
T ss_pred             eCCchHHHHHHHHHhh-ccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccccccHHHHHHhcC---CC
Confidence            9999999999943221 23666    899998888776554   45789999999994  567889999999998   46


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ++++.+..-+|-+|+.++.+|   |.++|+++++++++|.+ +....-.     ..+..+    .-.++..|..|.||.+
T Consensus       182 T~lv~I~~Vnn~~gv~~Pv~E---I~~icr~~~v~v~~DaA-QavG~i~-----vDV~el----n~D~~s~s~HK~ygp~  248 (428)
T KOG1549|consen  182 TRLVSIMHVNNEIGVLQPVKE---IVKICREEGVQVHVDAA-QAVGKIP-----VDVQEL----NADFLSISAHKIYGPP  248 (428)
T ss_pred             ceEEEEEecccCccccccHHH---HHHHhCcCCcEEEeehh-hhcCCcc-----ccHHHc----CchheeeecccccCCC
Confidence            889999999999999998665   55579999999999999 4444321     122222    4457788889999999


Q ss_pred             cccceEEEEe
Q 017967          310 AERIGAMNVV  319 (363)
Q Consensus       310 G~RvG~i~~v  319 (363)
                      |  +|++++-
T Consensus       249 ~--iGaLYvr  256 (428)
T KOG1549|consen  249 G--IGALYVR  256 (428)
T ss_pred             c--ceEEEEc
Confidence            9  8999544

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.46  E-value=4.8e-12  Score=119.70  Aligned_cols=191  Identities=21%  Similarity=0.135  Sum_probs=134.5

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEE
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vl  181 (363)
                      +-+...+++.+.+..+.   +....-..+|.+++++|+..        .+.+.  +++||.|++++...+. +.|||.|+
T Consensus        13 i~~~e~~~v~~vl~sg~---i~~G~~v~~FE~~~ae~~G~--------k~ava--~~sgT~AL~laL~al~-ig~GDeVI   78 (374)
T COG0399          13 IGEEELAAVQEVLKSGW---LTGGPFVRRFEQAFAEYLGV--------KYAVA--VSSGTAALHLALLALA-IGPGDEVI   78 (374)
T ss_pred             cchHHHHHHHHHHHcCC---eecChHHHHHHHHHHHHhCC--------CeEEE--ecChHHHHHHHHHhcC-CCCCCEEE
Confidence            34555666666665543   22233457899999999644        45555  8999999999944333 67999999


Q ss_pred             EcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhc
Q 017967          182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK  261 (363)
Q Consensus       182 v~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~  261 (363)
                      +++-+|....+.+...|.+++.++++ ++++.+|++.+|++++++  .+.++.+.-..||.       ++++|.++|++|
T Consensus        79 ~ps~TfvATan~i~~~Ga~PVFvDid-~~T~nid~~~ie~aIt~~--tKAIipVhl~G~~~-------dm~~i~~la~~~  148 (374)
T COG0399          79 VPSFTFVATANAVLLVGAKPVFVDID-PDTLNIDPDLIEAAITPR--TKAIIPVHLAGQPC-------DMDAIMALAKRH  148 (374)
T ss_pred             ecCCchHHHHHHHHHcCCeEEEEecC-CcccCCCHHHHHHHcccC--CeEEEEehhccCCC-------CHHHHHHHHHHc
Confidence            99999999999999999999999995 568999999999999952  33344444456653       678888889999


Q ss_pred             CCeEEEecCCCCCc--CCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHH
Q 017967          262 NHIPFFDVAYQGFA--SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       262 ~~~ii~De~y~~~~--~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      |++||+|.+ +.+.  +.+     ..+   ...++-..+.+=-+|.++ +| --|.+  ++.|++.++++
T Consensus       149 ~l~vIEDaA-qa~Ga~y~g-----k~v---Gt~Gd~~~fSF~~~K~it-tg-EGGav--~tnd~ela~k~  205 (374)
T COG0399         149 GLPVIEDAA-QAHGATYKG-----KKV---GSFGDIGAFSFHATKNLT-TG-EGGAV--VTNDEELAEKA  205 (374)
T ss_pred             CCeEEEEcc-hhccCeecC-----ccc---ccccceEEEEecCCCCcc-cc-CceEE--EeCCHHHHHHH
Confidence            999999999 3332  221     011   122233333334489998 67 46888  77777754444

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.46  E-value=8.1e-12  Score=122.21  Aligned_cols=255  Identities=11%  Similarity=0.044  Sum_probs=144.2

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCC--CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+++ .++|+..|.-...-|+  -.+.+.+++.+.+.......+  .+..-..+|-+.+++..-.     -..+++.+ 
T Consensus        29 D~dG~-~ylD~~~g~~~~~lGh--~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~-----~~~~~v~f-   99 (420)
T TIGR00700        29 DVDGN-RLIDFASGIAVLNIGH--SHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPG-----SGPKKSVF-   99 (420)
T ss_pred             eCCCC-EEEECccCHHhccCCC--CCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCC-----CCCCEEEE-
Confidence            34443 7888876642221222  234555565555433111111  1222223444444443211     01257777 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CC--------C-----CeEEEecccCCC---------C
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR--------V-----PWSEYRYYDPKT---------V  212 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G--------~-----~~~~v~~~~~~~---------~  212 (363)
                       +.+|++|.+.+..+........+|+...-+|.+....... .|        .     .+..++..+...         +
T Consensus       100 -~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (420)
T TIGR00700       100 -FNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLST  178 (420)
T ss_pred             -eCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhH
Confidence             8999999999977655554446788888888665332211 11        1     122232210000         0


Q ss_pred             CCCHHHHHHHHH--cCCCCcEEEEEcCCCCCCCCCCCHHH-HHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH
Q 017967          213 GLDFEGMIADIK--AAPGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (363)
Q Consensus       213 ~~d~~~l~~~l~--~~~~~~~~~~i~~p~NPTG~~~s~~~-~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  289 (363)
                      .-+++.+++.+.  ..++....+++-.-+.-+|..++.++ +++|.++|++||+++|+||+|.+|...+   ...+...+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g---~~~a~~~~  255 (420)
T TIGR00700       179 DGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG---AMFACEHE  255 (420)
T ss_pred             HHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc---hhHHHhhc
Confidence            012456666653  22344555555444556788775555 9999999999999999999999997643   12222221


Q ss_pred             HhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       290 ~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       ...++   +.+|||.++ +|+|+||+  +++ ++    +.+.+........++.++++|.++...|+
T Consensus       256 -~~~pD---i~~lsK~l~-~G~pig~v--~~~-~~----i~~~~~~~~~~~T~~~~pl~~aaa~a~l~  311 (420)
T TIGR00700       256 -GPEPD---LITTAKSLA-DGLPLSGV--TGR-AE----IMDAPAPGGLGGTYAGNPLACAAALAVLA  311 (420)
T ss_pred             -CCCCC---EEEeecccc-CCcceEEE--Eec-HH----HHhhcCCCCcCCCCCcCHHHHHHHHHHHH
Confidence             11223   445999999 99999999  665 65    55555433344555788899988855543

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.46  E-value=6.9e-12  Score=120.43  Aligned_cols=196  Identities=19%  Similarity=0.193  Sum_probs=132.9

Q ss_pred             CCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh--
Q 017967          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN--  195 (363)
Q Consensus       120 ~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~--  195 (363)
                      +.|+.  ......|.+.+++...+        +.+++  +++|.+|+..+  ++.++.+||+|+++...|.+....++  
T Consensus        47 ~~Y~R~gnPt~~~le~~la~Le~g--------~~a~~--~~SGmaAi~~~--l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~  114 (386)
T PF01053_consen   47 YIYSRYGNPTVRALEQRLAALEGG--------EDALL--FSSGMAAISAA--LLALLKPGDHIVASDDLYGGTYRLLEEL  114 (386)
T ss_dssp             CSBTTTC-HHHHHHHHHHHHHHT---------SEEEE--ESSHHHHHHHH--HHHHS-TTBEEEEESSSSHHHHHHHHHC
T ss_pred             cceeccccccHHHHHHHHHHhhcc--------cceee--ccchHHHHHHH--HHhhcccCCceEecCCccCcchhhhhhh
Confidence            44533  44556788899888533        46666  89999998777  67778899999999999988877665  


Q ss_pred             --hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcC-CeEEEecCCC
Q 017967          196 --DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN-HIPFFDVAYQ  272 (363)
Q Consensus       196 --~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~-~~ii~De~y~  272 (363)
                        ..|+++..++.       -|++++++++++   +++++++-+|.||+..+   .++++|+++|+++| +++|+|+.|.
T Consensus       115 l~~~gv~v~~~d~-------~d~~~l~~~l~~---~t~~v~~EspsNP~l~v---~Dl~~i~~~a~~~g~~~~vVDnT~a  181 (386)
T PF01053_consen  115 LPRFGVEVTFVDP-------TDLEALEAALRP---NTKLVFLESPSNPTLEV---PDLEAIAKLAKEHGDILVVVDNTFA  181 (386)
T ss_dssp             HHHTTSEEEEEST-------TSHHHHHHHHCT---TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTT
T ss_pred             hcccCcEEEEeCc-------hhHHHHHhhccc---cceEEEEEcCCCccccc---ccHHHHHHHHHHhCCceEEeecccc
Confidence              57999888754       478999999983   67888889999999655   56778888899998 9999999986


Q ss_pred             CCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccccc-ceEEEEeeCC-hhHHHHHHHHHHhhhccccCCCchHHHH
Q 017967          273 GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER-IGAMNVVCSS-SDLAARVKSQLKRLARPMYSNPPPMLLG  350 (363)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~R-vG~i~~v~~~-~~~~~~~~~~l~~~~~~~~~~~s~~~q~  350 (363)
                      ....-.      +    ++. .-.+++.|.+|.++-.|-- .|.+  ++.+ ++    +.+.++..........++....
T Consensus       182 tp~~~~------p----L~~-GaDivv~S~TKyl~Ghsdv~~G~v--v~~~~~~----~~~~l~~~~~~~G~~~~p~da~  244 (386)
T PF01053_consen  182 TPYNQN------P----LEL-GADIVVHSATKYLSGHSDVMGGAV--VVNGSSE----LYDRLREFRRLLGATLSPFDAW  244 (386)
T ss_dssp             HTTTC-------G----GGG-T-SEEEEETTTTTTTSSSE-EEEE--EESSHHH----HHHHHHHHHHHHT-B--HHHHH
T ss_pred             ceeeec------c----CcC-CceEEEeeccccccCCcceeeEEE--EECchhh----hhhhhcchhhhcCccchHHHHH
Confidence            543221      1    122 2458899999998633333 4555  4444 45    3444444444445577777777


Q ss_pred             HHhcccc
Q 017967          351 IQLSSMN  357 (363)
Q Consensus       351 ~~~~~l~  357 (363)
                      ++.+.|+
T Consensus       245 ll~rgl~  251 (386)
T PF01053_consen  245 LLLRGLR  251 (386)
T ss_dssp             HHHHHHT
T ss_pred             HHhcCCC
Confidence            7766554

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.45  E-value=1.3e-11  Score=120.69  Aligned_cols=253  Identities=15%  Similarity=0.120  Sum_probs=148.1

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCC--CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      .+++ .++|+..|.-...-|+  -.+.+.+++.+.++......+  .+.....+|-+.+++..-.     -..+++.+  
T Consensus        37 ~dG~-~ylD~~~g~~~~~lGh--~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~-----~~~~~~~f--  106 (421)
T PRK06777         37 VEGR-EYIDFAAGIAVLNTGH--RHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPI-----DGPAKTAF--  106 (421)
T ss_pred             CCCC-EEEEcccCHHhhccCC--CCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCC-----CCCceEEE--
Confidence            3443 7888876642111122  234555555554433111111  1222233444444444210     01257777  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCC-------------CeEEEecccCCCCC----CCHHH
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARV-------------PWSEYRYYDPKTVG----LDFEG  218 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~-------------~~~~v~~~~~~~~~----~d~~~  218 (363)
                      +.+|++|.+.+..+........+|+...-+|.+...... ..|.             .+..++..+. ..+    -+++.
T Consensus       107 ~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~  185 (421)
T PRK06777        107 FTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNE-LHGVSVEEALSS  185 (421)
T ss_pred             eCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc-ccCcCHHHHHHH
Confidence            889999999997765554434678888888866643322 1121             0112222110 111    13566


Q ss_pred             HHHHHHc--CCCCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCe
Q 017967          219 MIADIKA--APGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (363)
Q Consensus       219 l~~~l~~--~~~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~  295 (363)
                      +++.+..  .+++...+++-..++..|. .++.+.+++|.++|+++|+++|+||+|.+|...+   ..+....+ +..++
T Consensus       186 l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g---~~~~~~~~-~~~pD  261 (421)
T PRK06777        186 VERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG---KLFAMEYY-DVKPD  261 (421)
T ss_pred             HHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCC---chhhhhhc-CCCCC
Confidence            7777753  2344556665556778885 5789999999999999999999999999986543   12232222 22234


Q ss_pred             EEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       296 vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ++   +|||.++ +|+|+||+  +++ ++    +++.+........++.++++|.++...|+
T Consensus       262 iv---~~sK~l~-~G~pigav--~~~-~~----i~~~~~~~~~~~T~~~~p~~~aaa~a~L~  312 (421)
T PRK06777        262 LI---TMAKSLG-GGMPISAV--VGR-AE----VMDAPAPGGLGGTYAGNPLAVAAALAVLD  312 (421)
T ss_pred             EE---eeehhhc-CCCceEEE--EEc-HH----HHhccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            33   6999999 99999999  665 66    55555433344455778899998877775

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.44  E-value=6.2e-12  Score=120.75  Aligned_cols=189  Identities=21%  Similarity=0.110  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHccCCCCCCCC-CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEc
Q 017967          105 VVKKAENLMLERGENKEYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLIS  183 (363)
Q Consensus       105 ~v~~a~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~  183 (363)
                      ...+++.+.+..+.   +.. ..-..+|.+++++++..        ++++.  +.+||.|+.++...+ -+.+||+|+++
T Consensus         6 e~~~~v~~~l~s~~---~~~~g~~~~~fE~~~a~~~g~--------~~~~~--~~sgt~Al~~al~~l-~~~~gdeVi~p   71 (363)
T PF01041_consen    6 EEIDAVLEVLRSGW---LSTYGPYVEEFEKEFAEYFGV--------KYAVA--VSSGTSALHLALRAL-GLGPGDEVIVP   71 (363)
T ss_dssp             HHHHHHHHHHHHTC---CSSSSHHHHHHHHHHHHHHTS--------SEEEE--ESSHHHHHHHHHHHT-TGGTTSEEEEE
T ss_pred             HHHHHHHHHHHhCC---ccCCCHHHHHHHHHHHHHhCC--------CeEEE--eCChhHHHHHHHHhc-CCCcCceEecC
Confidence            33445555554433   222 44568999999999743        57766  899999999984332 13499999999


Q ss_pred             CCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 017967          184 SPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNH  263 (363)
Q Consensus       184 ~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~  263 (363)
                      ..+|......+...|++++.++++ ++++.+|++.+++.+++   +++++++.+   .-|..   .++.+|.++|+++|+
T Consensus        72 ~~t~~~~~~ai~~~G~~pv~~Di~-~~~~~id~~~~~~~i~~---~t~ai~~~h---~~G~~---~d~~~i~~~~~~~~i  141 (363)
T PF01041_consen   72 AYTFPATASAILWAGAEPVFVDID-PETLNIDPEALEKAITP---KTKAILVVH---LFGNP---ADMDAIRAIARKHGI  141 (363)
T ss_dssp             SSS-THHHHHHHHTT-EEEEE-BE-TTTSSB-HHHHHHHHHT---TEEEEEEE----GGGB------HHHHHHHHHHTT-
T ss_pred             CCcchHHHHHHHHhccEEEEEecc-CCcCCcCHHHHHHHhcc---CccEEEEec---CCCCc---ccHHHHHHHHHHcCC
Confidence            999999999999999999999996 57899999999999984   344444333   22332   378889999999999


Q ss_pred             eEEEecCCCCCcC-CCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHH
Q 017967          264 IPFFDVAYQGFAS-GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       264 ~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      ++|+|.+-.-... .+     ..+   ...++-.++...-+|.+. .|. -|.+  ++.+++..+++
T Consensus       142 ~lIeD~a~a~g~~~~g-----~~~---G~~gd~~~fSf~~~K~i~-~ge-GG~v--~~~~~~~~~~~  196 (363)
T PF01041_consen  142 PLIEDAAQAFGARYKG-----RPV---GSFGDIAIFSFHPTKIIT-TGE-GGAV--VTNDPELAERA  196 (363)
T ss_dssp             EEEEE-TTTTT-EETT-----EET---TSSSSEEEEESSTTSSS--SSS--EEE--EESTHHHHHHH
T ss_pred             cEEEccccccCceeCC-----Eec---cCCCCceEecCCCCCCCc-CCC-CeeE--EecHHHHHHHh
Confidence            9999999443221 11     010   122333333334489985 565 5888  78888744444

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.44  E-value=1.7e-11  Score=118.18  Aligned_cols=207  Identities=11%  Similarity=0.084  Sum_probs=138.2

Q ss_pred             HHHHHH-HHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEE
Q 017967          104 DVVKKA-ENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (363)
Q Consensus       104 ~~v~~a-~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv  182 (363)
                      ..++++ +..+... . ..|.......+|.+++++++..        ++++.  +.+|+.|+++++  ...+.|||.|  
T Consensus        50 ~aMs~~q~a~~~~G-D-e~yag~~s~~~lE~~va~~~G~--------~~av~--v~sGT~Al~ll~--~l~l~pGDeV--  113 (450)
T TIGR02618        50 NAMSDKQWAGLMMG-D-EAYAGSRNFYHLERTVRELYGF--------KYVVP--THQGRGAENLLS--QIAIKPGDYV--  113 (450)
T ss_pred             HHHHHHHHHHhhhc-c-hhhcCCCcHHHHHHHHHHHHCC--------CeEEE--cCCHHHHHHHHH--HhCCCCcCEE--
Confidence            566666 5544422 2 3598888899999999999633        56767  999999999873  3346799977  


Q ss_pred             cCCCCcc-hHHHHhhCCCCeEEEecc--------cCCCCCCCHHHHHHHHHcCC-CCcEEEEEcCCCC-CCCCCCCHHHH
Q 017967          183 SSPTWGN-HKNIFNDARVPWSEYRYY--------DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHN-PTGIDPTPEQW  251 (363)
Q Consensus       183 ~~P~y~~-~~~~~~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~~p~N-PTG~~~s~~~~  251 (363)
                      +.++|.. ....++..|..++.++.+        ++.++.+|++.+++.+++.. ....++.+.+++| ..|..++.+++
T Consensus       114 psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l  193 (450)
T TIGR02618       114 PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANM  193 (450)
T ss_pred             CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHH
Confidence            6677744 444478889877776543        24468899999999998522 1233555566777 55899999999


Q ss_pred             HHHHHHHHhcCCeEEEecCCCC----CcCC-CCCCchhHH----HHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          252 EKIADVIQEKNHIPFFDVAYQG----FASG-SLDNDASSV----RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       252 ~~i~~~~~~~~~~ii~De~y~~----~~~~-~~~~~~~~~----~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      ++|.++|+++|+.+++|.+-.-    |... +......++    +.+.+..+-  +..|..|.++.+-  -|++  .+.+
T Consensus       194 ~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~--~~~S~~Kd~~~~~--GG~l--~~~d  267 (450)
T TIGR02618       194 REVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADG--CTMSGKKDCLVNI--GGFL--CMND  267 (450)
T ss_pred             HHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcE--EEEeeccCCCCCC--ceEE--EeCC
Confidence            9999999999999999998432    1100 000011123    333333333  7889999887661  2444  4467


Q ss_pred             hhHHHHHHHH
Q 017967          323 SDLAARVKSQ  332 (363)
Q Consensus       323 ~~~~~~~~~~  332 (363)
                      ++.++++.+.
T Consensus       268 ~~l~~k~r~~  277 (450)
T TIGR02618       268 DEMFQSAKEL  277 (450)
T ss_pred             HHHHHHHHHH
Confidence            8855554443

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.43  E-value=1.4e-11  Score=121.52  Aligned_cols=255  Identities=13%  Similarity=0.056  Sum_probs=141.2

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      .+++ .+||+..|.-...-|+  -.+.+.+++.+.++......  ......+....+|+.+........ .+++.+  +.
T Consensus        51 ~dG~-~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~--~~~~~~~~~~~la~~L~~~~p~~~-~~~v~f--~~  122 (451)
T PRK06918         51 VDGN-QYIDFAGAIGTINVGH--SHPKVKEALHKQVDQYIHTG--FNVMMYEPYIELAEKLAALAPGSF-DKKVLF--LN  122 (451)
T ss_pred             CCCC-EEEEcCCchhhcCCCC--CCHHHHHHHHHHHHhccCcc--ccccccHHHHHHHHHHHHhCCCCC-CCEEEE--cC
Confidence            3443 6888876642222222  24456666655553311011  100112333444444433221100 157877  99


Q ss_pred             chhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CCC-------------CeEEEecccC--CCCCCC-------
Q 017967          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARV-------------PWSEYRYYDP--KTVGLD-------  215 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~-------------~~~~v~~~~~--~~~~~d-------  215 (363)
                      +|++|.+.+..+.+.+....+|+...-+|.+....... .|-             .+..+|..+.  ...+..       
T Consensus       123 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (451)
T PRK06918        123 SGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDF  202 (451)
T ss_pred             CcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHH
Confidence            99999999977665554346788888888666432221 110             1222222100  001111       


Q ss_pred             -HHHHHHHHHc--CCCCcEEEEEcCCCCCC-CCCCC-HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH
Q 017967          216 -FEGMIADIKA--APGGSFILLHGCAHNPT-GIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (363)
Q Consensus       216 -~~~l~~~l~~--~~~~~~~~~i~~p~NPT-G~~~s-~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  290 (363)
                       .+.+++.+..  .++ .+.-++..|-+.. |.+++ .+.+++|.++|+++|+++|+||+|.+|...+   ...+...+ 
T Consensus       203 ~~~~~~~~~~~~~~~~-~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g---~~~a~~~~-  277 (451)
T PRK06918        203 MIEEFKNFFISEVAPE-TIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTG---KYFAIEHF-  277 (451)
T ss_pred             HHHHHHHHHHhhcCCC-ceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccC---ceehhHhc-
Confidence             1233433321  223 3444456776666 65454 4559999999999999999999999997643   12333333 


Q ss_pred             hcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       291 ~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +..++   +.+|||.++ +|+|+||+  +++ ++    +.+.+.........+.++++|.++...|+
T Consensus       278 ~v~pD---i~t~sK~l~-~G~pig~v--~~~-~~----i~~~~~~~~~~~T~~g~~l~~aaa~a~l~  333 (451)
T PRK06918        278 DVVPD---LITVSKSLG-AGVPISGV--IGR-KE----IMDESAPGELGGTYAGSPLGCAAALAVLD  333 (451)
T ss_pred             CCCCC---EEeeehhhc-CCCccEEE--EEc-HH----HHhccCCCCcCcCCCcCHHHHHHHHHHHH
Confidence            21123   448999999 99999999  776 55    55555433344556788899998655554

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.43  E-value=2.4e-11  Score=118.89  Aligned_cols=162  Identities=17%  Similarity=0.103  Sum_probs=114.4

Q ss_pred             CCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HH
Q 017967          120 KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NI  193 (363)
Q Consensus       120 ~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~----~~  193 (363)
                      ..|..  ......|++.++++...       +..++   +.+|+.|+.++  ++.++.+||+|+++...|....    ..
T Consensus        61 ~~Y~r~~~pt~~~le~~la~l~g~-------~~~v~---fsSG~~Ai~~a--l~~ll~~Gd~VI~~~~~y~~t~~~~~~~  128 (437)
T PRK05613         61 PIYSRLTNPTVEALENRIASLEGG-------VHAVA---FASGQAAETAA--ILNLAGAGDHIVTSPRLYGGTETLFLVT  128 (437)
T ss_pred             ceeeCccChHHHHHHHHHHHHhCC-------CeEEE---eCCHHHHHHHH--HHHhcCCCCEEEECCCccHHHHHHHHHH
Confidence            34543  33457888899888533       23443   57777887765  5556789999999999998774    34


Q ss_pred             HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC
Q 017967          194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (363)
Q Consensus       194 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~  273 (363)
                      ++..|++++.++.  .    .|++.+++++++   +++++++..+.||+|.+.+   +++|.++|+++|+++|+|.++..
T Consensus       129 l~~~Gi~v~~vd~--~----~d~e~l~~~l~~---~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~  196 (437)
T PRK05613        129 LNRLGIEVTFVEN--P----DDPESWQAAVQP---NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIAT  196 (437)
T ss_pred             HHhcCeEEEEECC--C----CCHHHHHHhCCc---cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCcc
Confidence            5788999988872  2    278999998873   4556667789999997776   55666679999999999999643


Q ss_pred             CcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      ...-      .+.    +. .-.+++.|++|.++-.|--+|-+
T Consensus       197 g~~~------~p~----~~-GaDivv~S~~K~l~G~gd~~gG~  228 (437)
T PRK05613        197 AALV------RPL----EL-GADVVVASLTKFYTGNGSGLGGV  228 (437)
T ss_pred             cccc------ChH----Hh-CCCEEEeeccceecCCCcceeEE
Confidence            2211      111    12 23688899999998666666776

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.42  E-value=5.5e-11  Score=115.96  Aligned_cols=223  Identities=14%  Similarity=0.066  Sum_probs=133.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc--CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      ..++|+...|..-..+|.+.+.+.+++.+....  +...-++...-+.+|.+++|+|+..        +..++  .++|.
T Consensus       103 ~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~--------e~all--~sSGy  172 (476)
T PLN02955        103 KLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKK--------EDCLV--CPTGF  172 (476)
T ss_pred             eEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCC--------CcEEE--ECChH
Confidence            679999988865444443334444443332110  0001111122347899999999633        45555  67777


Q ss_pred             HHHHHHHHHHHH------------hCCCCEEEEcCCCCcchHHHHhhC----CCCeEEEecccCCCCCCCHHHHHHHHHc
Q 017967          162 GSLRLAAALIER------------YFPGAKVLISSPTWGNHKNIFNDA----RVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (363)
Q Consensus       162 ~al~l~~~l~~~------------~~~gd~Vlv~~P~y~~~~~~~~~~----G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (363)
                      .|...+...+..            ...+|.|++-.-.+.....-++..    +++++.++       .-|++.|++.++.
T Consensus       173 ~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~-------HND~~~Le~~L~~  245 (476)
T PLN02955        173 AANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYR-------HCDMYHLNSLLSS  245 (476)
T ss_pred             HHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeC-------CCCHHHHHHHHHh
Confidence            765444222210            124456666666666666555544    45666554       3588999999976


Q ss_pred             CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccc
Q 017967          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (363)
Q Consensus       226 ~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  305 (363)
                      .+....++++-.--++.|...+   +++|.++|++||.++|+||++..+..+..-.  -....+--..+..|+++||||.
T Consensus       246 ~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~--G~~e~~g~~~di~ii~~TLsKA  320 (476)
T PLN02955        246 CKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGG--GVAEEFNCEADVDLCVGTLSKA  320 (476)
T ss_pred             CCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCC--cHHHHhCCCCCCcEEEEeCccc
Confidence            5444556665556889999888   5556666899999999999998777653111  1122221124678999999999


Q ss_pred             cccccccceEEEEeeCChhHHHHHHHHHHhhhc
Q 017967          306 LGLYAERIGAMNVVCSSSDLAARVKSQLKRLAR  338 (363)
Q Consensus       306 ~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~  338 (363)
                      +|+.|   |++  +++ ++    +++.++...+
T Consensus       321 ~G~~G---Gfi--~gs-~~----~~~~l~~~~~  343 (476)
T PLN02955        321 AGCHG---GFI--ACS-KK----WKQLIQSRGR  343 (476)
T ss_pred             hhccC---cee--ecH-HH----HHHHHHHhCC
Confidence            87654   888  554 66    4455554433

>PRK04311 selenocysteine synthase; Provisional

Probab=99.40  E-value=5.9e-11  Score=116.61  Aligned_cols=231  Identities=18%  Similarity=0.151  Sum_probs=146.2

Q ss_pred             hhHHHHHhcCCC---CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCC---cc--hHHHHHHHHHHHhcC
Q 017967           71 LGVSEAFKADTD---EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---EG--LAAFNKVTAELLFGA  142 (363)
Q Consensus        71 ~~~~~~~~~~~~---~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~G--~~~lr~aia~~l~~~  142 (363)
                      ..+.+.+.....   ..+||.+--.+.++.+.+.+++.+.+++.+......+.+|.-.   .|  ...+++.+++++.. 
T Consensus        64 ~~~~~~~~~~~~~~lr~vinatg~v~~tNlg~s~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga-  142 (464)
T PRK04311         64 AEVEARLAARARPSLRPVINATGVVLHTNLGRALLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA-  142 (464)
T ss_pred             HHHHHHHHhhccCCCcceecCCccEEeccCCCCCCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC-
Confidence            344444444333   2678876444555566677888888888777643222222111   12  35788888888533 


Q ss_pred             CCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcc------hHHHHhhCCCCeEEEecccCCCCCCCH
Q 017967          143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN------HKNIFNDARVPWSEYRYYDPKTVGLDF  216 (363)
Q Consensus       143 ~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~------~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (363)
                             +..++  +++|+.|+.++   +..+.+||+|+++...+..      ....++..|++++.++..    ...++
T Consensus       143 -------e~a~v--v~sgtaAl~l~---l~~l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~----~~t~~  206 (464)
T PRK04311        143 -------EDALV--VNNNAAAVLLA---LNALAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT----NRTHL  206 (464)
T ss_pred             -------CeEEE--ECCHHHHHHHH---HHHhCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC----CCCCH
Confidence                   34555  78899998777   3446799999998763321      234567889999998753    23578


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCCCCCC--CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCc----CCCCCCchhHHHHHH
Q 017967          217 EGMIADIKAAPGGSFILLHGCAHNPT--GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA----SGSLDNDASSVRLFA  290 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i~~p~NPT--G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~----~~~~~~~~~~~~~~~  290 (363)
                      +++++++++   +++++++.+++||+  |.. ...++++|+++|+++|+++|+|.....+.    ++ . ...+.+....
T Consensus       207 ~dle~aI~~---~TklV~~vh~sN~~i~G~~-~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~g-l-~~~p~~~~~l  280 (464)
T PRK04311        207 RDYEQAINE---NTALLLKVHTSNYRIEGFT-KEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYG-L-PDEPTVQELL  280 (464)
T ss_pred             HHHHHhcCc---cCeEEEEEcCCCccccccC-CcCCHHHHHHHHHHcCCeEEEECCCcccccchhcc-C-CCCCchhhHH
Confidence            999999873   46788889999994  532 22467888888999999999999632221    11 0 0011222222


Q ss_pred             hcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHH
Q 017967          291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       291 ~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~  330 (363)
                      +. .-.++++|..|.+|  |-..|++  ++. ++.++++.
T Consensus       281 ~~-GaDiv~fSg~K~Lg--Gp~~G~i--~g~-~~li~~l~  314 (464)
T PRK04311        281 AA-GVDLVTFSGDKLLG--GPQAGII--VGK-KELIARLK  314 (464)
T ss_pred             hc-CCcEEEecCccccc--CCceEEE--EEc-HHHHHHHh
Confidence            23 34488999999887  3358888  554 66554443

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.37  E-value=1.5e-11  Score=113.73  Aligned_cols=208  Identities=20%  Similarity=0.120  Sum_probs=139.1

Q ss_pred             cHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEE
Q 017967          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI  182 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv  182 (363)
                      .+.+.+++.... .+. ..|+......+|.+.+++++..        +..++  +.+||.|..++.  ...+.|++.|++
T Consensus         8 ~~~m~~a~~~a~-~gd-~~Yg~D~~~~~l~~~i~~l~g~--------e~a~f--~~sGT~An~~al--~~~~~~~~~vi~   73 (290)
T PF01212_consen    8 TPAMLEAMAAAN-VGD-DAYGEDPTTARLEERIAELFGK--------EAALF--VPSGTMANQLAL--RAHLRPGESVIC   73 (290)
T ss_dssp             -HHEEHHHHHTT-SB--CCTTSSHHHHHHHHHHHHHHTS--------SEEEE--ESSHHHHHHHHH--HHHHHTTEEEEE
T ss_pred             CHHHHHHHHccc-cCC-cccCCChhHHHHHHHHHHHcCC--------CEEEE--eCCCChHHHHHH--HHHHhcCCceec
Confidence            445566654433 233 3699999999999999999643        34445  789999998884  344579999999


Q ss_pred             cCCCCcch---HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc---CCCCcEEEEEcCCCCCC-CCCCCHHHHHHHH
Q 017967          183 SSPTWGNH---KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPT-GIDPTPEQWEKIA  255 (363)
Q Consensus       183 ~~P~y~~~---~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~~~~~~i~~p~NPT-G~~~s~~~~~~i~  255 (363)
                      ..+++...   .......|++++.++..  +++.++++++++.+..   +...+.++.+.+++|-. |.+++.+++++|.
T Consensus        74 ~~~aHi~~~E~ga~~~~~G~~~~~l~~~--~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~  151 (290)
T PF01212_consen   74 ADTAHIHFDETGAIEELSGAKLIPLPSD--DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS  151 (290)
T ss_dssp             ETTEHHHHSSTTHHHHHTTCEEEEEBEC--TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred             cccceeeeeccchhhHhcCcEEEECCCc--ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence            99866422   22335689999999873  2378999999999987   22457788889999975 8899999999999


Q ss_pred             HHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHh
Q 017967          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR  335 (363)
Q Consensus       256 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~  335 (363)
                      ++|+++|+.++.|.+-..-.-.   ....++..+. .+-+ .+..|++|.+|+++   |.+  ++.+++.+++.....+.
T Consensus       152 ~~a~~~gl~lhmDGARl~~a~~---~~~~~~~e~~-~~~D-~v~~~~tK~~g~~~---Gav--l~~~~~~i~~~~~~~k~  221 (290)
T PF01212_consen  152 ELAREHGLPLHMDGARLANAAA---ALGVSLAEIA-AGAD-SVSFGGTKNGGAPG---GAV--LAGNKEFIAKARRQRKR  221 (290)
T ss_dssp             HHHHHHT-EEEEEETTHHHHHC---HHHHHHHHHH-TTSS-EEEEETTSTT-SSS---EEE--EEESHHHHHHHHHHHHH
T ss_pred             HHHHhCceEEEEehhhHHHhhh---cccccHHHHh-hhCC-EEEEEEEccccccc---ceE--EEechHHHHHHHHHHHH
Confidence            9999999999999993211110   0112334443 2233 45668899998764   777  55567755555444444


Q ss_pred             h
Q 017967          336 L  336 (363)
Q Consensus       336 ~  336 (363)
                      +
T Consensus       222 ~  222 (290)
T PF01212_consen  222 L  222 (290)
T ss_dssp             H
T ss_pred             h
Confidence            3

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.36  E-value=4.9e-11  Score=109.98  Aligned_cols=183  Identities=21%  Similarity=0.278  Sum_probs=120.0

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEE-EcCCCCcchHHHH---------
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL-ISSPTWGNHKNIF---------  194 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vl-v~~P~y~~~~~~~---------  194 (363)
                      ..|-..|.+-.|+.+..       ++-++-.|..+||+|+.++  ++..++|||+.+ +...-|.....++         
T Consensus        53 D~GRd~le~iyA~vfga-------E~ALVRpq~vSGTHAi~~~--Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GS  123 (403)
T PF06838_consen   53 DIGRDKLERIYADVFGA-------EDALVRPQFVSGTHAIALA--LFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGS  123 (403)
T ss_dssp             -HHHHHHHHHHHHHCT--------SEEEEETTS-SHHHHHHHH--HHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSS
T ss_pred             CccHHHHHHHHHHHhCc-------hhhhhcccccchHHHHHHH--HHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCC
Confidence            44666666666666433       3555556689999998888  888899999977 4567788777766         


Q ss_pred             -hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhc--CCeEEEecCC
Q 017967          195 -NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVAY  271 (363)
Q Consensus       195 -~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~--~~~ii~De~y  271 (363)
                       +..|+++..+++.  +++.+|.+.++++++.  +.+++++.-+...-+-..++.++++++++++++.  ++++++|++|
T Consensus       124 L~e~Gi~Y~~v~L~--~dg~~D~~~i~~~~~~--~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCY  199 (403)
T PF06838_consen  124 LKEFGIKYREVPLT--EDGTIDWEAIKKALKP--NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCY  199 (403)
T ss_dssp             TGGGT-EEEE--B---TTSSB-HHHHHHHHHT--TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TT
T ss_pred             hHHhCceeEEEeec--CCCCcCHHHHHHhhcc--CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence             5678999999984  4689999999999993  4566777666777777789999999999999874  7999999999


Q ss_pred             CCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccccc--ceEEEEeeCChhHHHHHHHHHH
Q 017967          272 QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER--IGAMNVVCSSSDLAARVKSQLK  334 (363)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~R--vG~i~~v~~~~~~~~~~~~~l~  334 (363)
                      .+|.... |+  ..      - .-.++.+|+-|+.| .|+-  -||+  +. .++.+++...+|.
T Consensus       200 GEFvE~~-EP--~~------v-GADl~aGSLIKNpG-GgiAptGGYI--aG-r~~lVe~~a~RLT  250 (403)
T PF06838_consen  200 GEFVETQ-EP--TE------V-GADLMAGSLIKNPG-GGIAPTGGYI--AG-RKDLVERAAYRLT  250 (403)
T ss_dssp             TTTTSSS--G--GG------G-T-SEEEEETTSGGG-TTT-SS-EEE--EE-SHHHHHHHHHHHS
T ss_pred             ceecccc-Cc--cc------c-chhheeccceeCCC-CCccCcCCEE--ec-hHHHHHHHHhhhc
Confidence            9998752 21  11      1 23478999999998 5653  3677  55 4886666655553

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.36  E-value=4.6e-11  Score=114.97  Aligned_cols=189  Identities=14%  Similarity=0.164  Sum_probs=123.2

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchH----HHHhhCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK----NIFNDARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~----~~~~~~G~~  200 (363)
                      .....+|.+.++++...        +..+.  +++|+.|+.++  ++.++.+||+|+++.+.|.+..    ..+...|++
T Consensus        63 ~P~~~~lE~~la~leg~--------~~av~--~sSG~aAi~~a--l~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~  130 (384)
T PRK06434         63 NPTVQAFEEKYAVLENA--------EHALS--FSSGMGAITSA--ILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIH  130 (384)
T ss_pred             ChhHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcE
Confidence            44567888899988533        34545  89999999988  5566889999999987665554    556688999


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      ++.++.++.+++.+         .  +++++++++..|.|||+.+   .++++|.++|++++  +++|.++......   
T Consensus       131 v~fvd~~~~~~~~l---------~--~~~tklv~~e~~snpt~~v---~Di~~I~~la~~~~--lvVD~t~~s~~~~---  191 (384)
T PRK06434        131 VDYIDTDRLNSLDF---------D--PSNYDLIYAESITNPTLKV---PDIKNVSSFCHEND--VIVDATFASPYNQ---  191 (384)
T ss_pred             EEEECCCChhheee---------c--CCCeeEEEEEcCCCCCcee---ecHHHHHHHHHHcC--eEEECCCCCcccC---
Confidence            99998743222221         1  2346688889999999976   46777788899988  4669996432211   


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                         .++    +. .-.+++.|.+|.++-+| .=.|.+  ++.+++..+++    +..........+++...++..-|+.
T Consensus       192 ---~pl----~~-gaDivv~S~tK~i~G~~d~~gG~v--v~~~~~~~~~~----~~~~~~~G~~~~~~~A~l~~~gL~t  256 (384)
T PRK06434        192 ---NPL----DL-GADVVIHSATKYISGHSDVVMGVA--GTNNKSIFNNL----VERRKTLGSNPDPIQAYLALRGLKT  256 (384)
T ss_pred             ---Cch----hc-CCCEEEeecccccCCCCCceEEEE--ecCcHHHHHHH----HHHHHhcCCCCCHHHHHHHHhCCCc
Confidence               122    11 24577888999997544 324555  55556633333    3222233445677766666665543

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.36  E-value=1e-10  Score=111.38  Aligned_cols=193  Identities=19%  Similarity=0.150  Sum_probs=137.6

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~  200 (363)
                      ......|.++++++- +       .++.+.  +++|.+|+..+  ++.++.+||+|+++...|.+....+    ++.|++
T Consensus        62 nPT~~~lE~~~a~LE-g-------~~~~~a--fsSGmaAI~~~--~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~  129 (396)
T COG0626          62 NPTRDALEEALAELE-G-------GEDAFA--FSSGMAAISTA--LLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVE  129 (396)
T ss_pred             CccHHHHHHHHHHhh-C-------CCcEEE--ecCcHHHHHHH--HHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeE
Confidence            556678888998884 2       245555  89999998887  6777889999999999998876655    478888


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      +..++.       .+.+.+++++.+  ++++++++=.|.|||-.+   .++.+|+++|+++|+++|+|+.|....+..  
T Consensus       130 ~~~~d~-------~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v---~DI~~i~~~A~~~g~~vvVDNTfatP~~q~--  195 (396)
T COG0626         130 VTFVDP-------GDDEALEAAIKE--PNTKLVFLETPSNPLLEV---PDIPAIARLAKAYGALVVVDNTFATPVLQR--  195 (396)
T ss_pred             EEEECC-------CChHHHHHHhcc--cCceEEEEeCCCCccccc---ccHHHHHHHHHhcCCEEEEECCcccccccC--
Confidence            887753       245566666652  357788889999999765   467778888999999999999998765532  


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhc-cccCCCchHHHHHHhcccc
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLAR-PMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~-~~~~~~s~~~q~~~~~~l~  357 (363)
                          +    ++. .-.|+++|.+|.++--+==+|-+ +++++++    +.+.+....+ ......+++...++.+.|+
T Consensus       196 ----P----L~~-GaDIVvhSaTKyl~GHsDvl~G~-v~~~~~~----~~~~~~~~~~~~~G~~l~p~dA~l~lRGlk  259 (396)
T COG0626         196 ----P----LEL-GADIVVHSATKYLGGHSDVLGGV-VLTPNEE----LYELLFFAQRANTGAVLSPFDAWLLLRGLR  259 (396)
T ss_pred             ----h----hhc-CCCEEEEeccccccCCcceeeeE-EecChHH----HHHHHHHHHHhhcCCCCCHHHHHHHHhccc
Confidence                1    122 24588999999997433333433 2556666    4444333333 3566788888888877665

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.35  E-value=5.8e-11  Score=114.32  Aligned_cols=199  Identities=18%  Similarity=0.106  Sum_probs=136.9

Q ss_pred             CCCCCccccHHHHHHHHHHHccCCC------CCCCC--CcchHHHHHHHHHHHhcCCCCcccC-CcEEEEeccchhHHHH
Q 017967           95 TEELQPYVLDVVKKAENLMLERGEN------KEYLP--IEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGTGSLR  165 (363)
Q Consensus        95 ~~~~~~~~~~~v~~a~~~~~~~~~~------~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt~al~  165 (363)
                      |..+..+.++.+.+++.+.......      ..+..  ..-..++|+.+++++...      + ++|++  +.|+|.+++
T Consensus         4 d~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~------~~~~v~~--~~~~t~a~~   75 (371)
T PF00266_consen    4 DNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAP------PDEEVVF--TSNGTEALN   75 (371)
T ss_dssp             BTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSS------TTEEEEE--ESSHHHHHH
T ss_pred             eCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCc------ccccccc--ccccchhhh
Confidence            4455667788888888776532110      11111  123457888899997543      3 68877  999999999


Q ss_pred             HHHHHHHH-hCCCCEEEEcCCCCcchH----HHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          166 LAAALIER-YFPGAKVLISSPTWGNHK----NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       166 l~~~l~~~-~~~gd~Vlv~~P~y~~~~----~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      ++...+.. +.+||+|++.+-.|+...    .+.+..|+++..++.+  .+..+|++.+++.+.   +++.+++++..+|
T Consensus        76 ~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~--~~~~~~~~~~~~~l~---~~~~lv~~~~~~~  150 (371)
T PF00266_consen   76 AVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD--PGGSLDLEDLEEALN---PDTRLVSISHVEN  150 (371)
T ss_dssp             HHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG--TTSSCSHHHHHHHHH---TTESEEEEESBET
T ss_pred             hhhhccccccccccccccccccccccccccccccccchhhhcccccc--ccchhhhhhhhhhhc---cccceEEeecccc
Confidence            98443321 679999999999987766    3344789999999884  356889999999997   3577888889999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      -||..++.+   +|.++|+++++++++|.+.+ +...+.     .    ++...-.+++.|.-|.+|.+|  +|++  +.
T Consensus       151 ~tG~~~pi~---~I~~~~~~~~~~~~vD~~~~-~g~~~i-----d----~~~~~~D~~~~s~~Kl~gp~G--~g~l--~v  213 (371)
T PF00266_consen  151 STGVRNPIE---EIAKLAHEYGALLVVDAAQS-AGCVPI-----D----LDELGADFLVFSSHKLGGPPG--LGFL--YV  213 (371)
T ss_dssp             TTTBBSSHH---HHHHHHHHTTSEEEEE-TTT-TTTSS-----------TTTTTESEEEEESTSTTSSST--EEEE--EE
T ss_pred             cccEEeeec---eehhhhhccCCceeEechhc-cccccc-----c----ccccccceeeecccccCCCCc--hhhh--ee
Confidence            999998755   56677999999999999954 332211     1    122234578889999555555  6888  55


Q ss_pred             CChh
Q 017967          321 SSSD  324 (363)
Q Consensus       321 ~~~~  324 (363)
                      . ++
T Consensus       214 ~-~~  216 (371)
T PF00266_consen  214 R-PE  216 (371)
T ss_dssp             E-HH
T ss_pred             h-hh
Confidence            4 55

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.34  E-value=5.1e-11  Score=116.54  Aligned_cols=252  Identities=10%  Similarity=0.052  Sum_probs=143.5

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+++ .++|+..|.-...-|+  -.+.+.+++.+.++...  ...+.+.....+|-+.+++..-..     ..+++.+ 
T Consensus        36 D~dG~-~ylD~~~g~~~~~lGh--~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~v~f-  106 (425)
T PRK07495         36 DKEGR-RYIDFAAGIAVVNTGH--RHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGD-----FAKKTIF-  106 (425)
T ss_pred             eCCCC-EEEEccccHHhhccCC--CCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCC-----CCCEEEE-
Confidence            34444 7888876642211222  23455555555443211  011222233334444444442110     0257877 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCC-------------CCeEEEecccCCCCCCC----HH
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR-------------VPWSEYRYYDPKTVGLD----FE  217 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G-------------~~~~~v~~~~~~~~~~d----~~  217 (363)
                       +++|++|.+.+..+........+|+...-+|.+...... ..|             ..+..+|..+. ..+.+    ++
T Consensus       107 -~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  184 (425)
T PRK07495        107 -VTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVE-LHGVSVEQSLA  184 (425)
T ss_pred             -CCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcc-cccccHHHHHH
Confidence             999999999997665555434678888888866532211 111             02233443211 12233    44


Q ss_pred             HHHHHHHc--CC-CCcEEEEEcCCCCCCC-CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC
Q 017967          218 GMIADIKA--AP-GGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (363)
Q Consensus       218 ~l~~~l~~--~~-~~~~~~~i~~p~NPTG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~  293 (363)
                      .+++.+..  .+ +...+++-+..+| +| ..++.+.+++|.++|+++|+++|+||+|.+|...+.   .+..    +..
T Consensus       185 ~l~~~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~---~~a~----~~~  256 (425)
T PRK07495        185 ALDKLFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK---LFAM----EHH  256 (425)
T ss_pred             HHHHHHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC---ceee----ccc
Confidence            55666642  12 2334555455666 78 457999999999999999999999999998854431   1111    112


Q ss_pred             CeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccc
Q 017967          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       294 ~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                      +.+.-+.+|||.++ .|+++|++  +++ ++    +.+.+........++.+++++.++...|
T Consensus       257 gv~pDi~tlsK~l~-~G~pigav--~~~-~~----i~~~~~~~~~~~T~~~~pl~~aaa~a~l  311 (425)
T PRK07495        257 EVAADLTTMAKGLA-GGFPLAAV--TGR-AE----IMDAPGPGGLGGTYGGNPLGIAAAHAVL  311 (425)
T ss_pred             CCCCCEEeehhhhc-CCccceEE--EEc-HH----HHhccCCCCcCCCCCCCHHHHHHHHHHH
Confidence            23445789999998 89999999  665 55    4444443333445577888888554443

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.33  E-value=1.9e-10  Score=112.70  Aligned_cols=215  Identities=16%  Similarity=0.102  Sum_probs=135.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC---Ccc--hHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEG--LAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~G--~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      ..||.+--.+.++.+..++++.+.+++.+......+.+|.-   ..|  ...+++.+++++...        ..++  ++
T Consensus        75 ~vinatg~v~~tNlg~s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae--------~alv--v~  144 (454)
T TIGR00474        75 RVINATGVVLHTNLGRAPLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAE--------DALV--VN  144 (454)
T ss_pred             ceeCCCCcEEeccCCCCCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCC--------cEEE--EC
Confidence            46665533344555666678888888877664321122311   112  367888999886432        3334  67


Q ss_pred             chhHHHHHHHHHHHHhCCCCEEEEcCCCCc---c---hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEE
Q 017967          159 SGTGSLRLAAALIERYFPGAKVLISSPTWG---N---HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~---~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (363)
                      +|+.|+.++   +..+.+||+|+++...+.   +   +...++..|++++.++..    ...++++++++++   +++++
T Consensus       145 sg~aAi~l~---l~~l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~----~~~~l~dle~aI~---~~T~l  214 (454)
T TIGR00474       145 NNAAAVLLA---LNTLAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT----NRTHLKDYEDAIT---ENTAL  214 (454)
T ss_pred             CHHHHHHHH---HHHhCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC----CCCCHHHHHHhcC---cCCEE
Confidence            888888776   345689999999986532   2   234567889999998752    2357899999887   35677


Q ss_pred             EEEcCCCCCC--CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCC---CCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          233 LLHGCAHNPT--GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG---SLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       233 ~~i~~p~NPT--G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~---~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                      +++.+++||+  |.. ...++++|+++|+++|+++++|....-+...   +. ...+.+....+.+ -.++++|.+|.+|
T Consensus       215 v~~~h~sN~~~~G~~-~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl-~~~p~~~~~~~~G-aDiv~fSg~K~Lg  291 (454)
T TIGR00474       215 LLKVHTSNYRIVGFT-EEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGL-PDEPTVQEVIAAG-VDLVTFSGDKLLG  291 (454)
T ss_pred             EEEEccCcccccCCC-CCCCHHHHHHHHHHcCCeEEEECCCcccccchhccC-CCCcccccHhHcC-CCEEEecCccccC
Confidence            7788999996  531 1235777888899999999999863322110   00 0011111222232 2388899999886


Q ss_pred             cccccceEEEEeeCChhHH
Q 017967          308 LYAERIGAMNVVCSSSDLA  326 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~~~  326 (363)
                      -+  ..|++  ++. ++.+
T Consensus       292 Gp--~~G~i--~g~-~~~i  305 (454)
T TIGR00474       292 GP--QAGII--VGK-KELI  305 (454)
T ss_pred             CC--eEEEE--EEC-HHHH
Confidence            34  57888  665 5544

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.28  E-value=5.7e-10  Score=106.43  Aligned_cols=221  Identities=13%  Similarity=0.078  Sum_probs=144.6

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHc--cCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE--RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~--~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      ..++||..+.|.....++.+.+.+.+++.+...  .+...-++...-+.+|.+.+|+|+..        +..++  ..+|
T Consensus        39 ~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~--------e~al~--f~SG  108 (388)
T COG0156          39 RKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGA--------EAALL--FSSG  108 (388)
T ss_pred             ceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCC--------CcEEE--Eccc
Confidence            478999999886555444444444444444221  11112344555678899999999633        34444  4666


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC-C--CcEEEEEcC
Q 017967          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-G--GSFILLHGC  237 (363)
Q Consensus       161 t~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~--~~~~~~i~~  237 (363)
                      -.|..-+  +-.++.++|.|+.-.-.+-....-++..+.+++.+.       ..|++.||+.+++.+ .  +.++++.-.
T Consensus       109 y~AN~~~--i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~-------HnD~~~Le~~l~~~~~~~~~~~~Ivteg  179 (388)
T COG0156         109 FVANLGL--LSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFK-------HNDLDHLEALLEEARENGARRKLIVTEG  179 (388)
T ss_pred             chhHHHH--HHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEec-------CCCHHHHHHHHHhhhccCCCceEEEEec
Confidence            6664333  455567899999999888888888888888988885       368899999997622 1  234555444


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHH-HH-HhcCCeEEEEEcCccccccccccceE
Q 017967          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR-LF-ATRGMELLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       238 p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~-~~~~~~vi~~~S~SK~~~l~G~RvG~  315 (363)
                      --.=.|.+   .++.+|++++++|+.++++||++.--.+++.   ...+. .+ +...+..|++++|||.||..|   ||
T Consensus       180 VfSMdGdi---ApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~---GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~  250 (388)
T COG0156         180 VFSMDGDI---APLPELVELAEKYGALLYVDEAHAVGVLGPN---GRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GY  250 (388)
T ss_pred             cccCCCCc---CCHHHHHHHHHHhCcEEEEEccccccccCCC---CccHHHHhCCCCccceEEEEEchhhhcccC---ce
Confidence            44445655   4567788889999999999999876666531   11222 22 222455899999999999766   77


Q ss_pred             EEEeeCChhHHHHHHHHHH
Q 017967          316 MNVVCSSSDLAARVKSQLK  334 (363)
Q Consensus       316 i~~v~~~~~~~~~~~~~l~  334 (363)
                      +   +.+...++.++...+
T Consensus       251 v---~g~~~~~d~L~~~ar  266 (388)
T COG0156         251 I---AGSAALIDYLRNRAR  266 (388)
T ss_pred             e---eCcHHHHHHHHHhCC
Confidence            7   555775555544433

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.28  E-value=5.9e-10  Score=109.57  Aligned_cols=249  Identities=12%  Similarity=0.055  Sum_probs=139.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCC--CCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .+||+..|.-...-|+  -.+.|.+++.+.++.....  .........+|.+.++++...      ..+.+.+  +++|+
T Consensus        44 ~ylD~~~g~~~~~lGh--~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~------~~~~v~f--~~SGs  113 (433)
T PRK08117         44 EYLDFTSGIAVANVGH--RHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPG------GLDCFFF--SNSGA  113 (433)
T ss_pred             EEEECCcchhhccCCC--CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCC------CCCEEEE--eCcHH
Confidence            7888877642122222  2445666665554321101  111223344555666555311      1357766  89999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCC--------C-----CeEEEecccCCC--CC--------CCHH
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR--------V-----PWSEYRYYDPKT--VG--------LDFE  217 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G--------~-----~~~~v~~~~~~~--~~--------~d~~  217 (363)
                      +|.+.+..+...+....+|+...-+|.+...... ..+        .     .+..+|..+...  .+        -+++
T Consensus       114 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (433)
T PRK08117        114 EAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLR  193 (433)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHH
Confidence            9999986654444333678888777766432211 111        0     122333211000  00        1456


Q ss_pred             HHHHHHHc--CCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC
Q 017967          218 GMIADIKA--APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (363)
Q Consensus       218 ~l~~~l~~--~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  294 (363)
                      .+++.+..  .++....+++-.-..-.|.. .+.+.+++|.++|++||+++|+||+|.+|...+.   ......+ +-.+
T Consensus       194 ~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~---~~~~~~~-gv~p  269 (433)
T PRK08117        194 DLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE---WFAAQTF-GVVP  269 (433)
T ss_pred             HHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc---chhHhhc-CCCC
Confidence            67776653  22334444443334444654 5789999999999999999999999998855431   1111111 1112


Q ss_pred             eEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       295 ~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +   +.+|||.+| +|+++|++  ++. ++    +.+.+........++.+++++.++...|+
T Consensus       270 D---i~t~sK~lg-~G~pigav--~~~-~~----i~~~~~~~~~~~T~~~np~~~aaa~a~L~  321 (433)
T PRK08117        270 D---IMTIAKGIA-SGLPLSAV--VAS-KE----LMEQWPLGSHGTTFGGNPVACAAALATLE  321 (433)
T ss_pred             C---Eeehhhhcc-CCCcceeE--EEc-HH----HHhhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence            2   469999999 89999999  654 66    44444333333344667888887766655

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=99.28  E-value=1.4e-11  Score=102.92  Aligned_cols=118  Identities=14%  Similarity=0.216  Sum_probs=81.2

Q ss_pred             CCCCCCCchhhHHHHHhc-----CCCC-CcEEeeccccCCCCCCccccHHHHHHHHHH-----------Hc-cCCCCCCC
Q 017967           62 VTMAPPDPILGVSEAFKA-----DTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLM-----------LE-RGENKEYL  123 (363)
Q Consensus        62 v~~~~~~~~~~~~~~~~~-----~~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~-----------~~-~~~~~~Y~  123 (363)
                      ....+.++.+..-+.|+.     ..+| ++|+|+++++.      ...+.+...+.+.           .+ ......|.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~y~~~~np~G~I~lg~aEN~------l~~dli~~~i~~~p~~d~~~~~~i~~~~~~~a~Y~   89 (153)
T PLN02994         16 DKHGEASPYFAGWKAYDLNPFDLLHNPQGIIQMGLAENQ------LCSDLIEEWIEENPHADICTAEGTIDSFKDIALFQ   89 (153)
T ss_pred             ccCCCCchHHHHHHHHhcCCCCcccCCCceEeeehhhhH------hHHHHHHHHHhCCCccccCCcHHHHHHHHHHhcCC
Confidence            333445555554455544     3566 79999998861      1222222222110           00 00013488


Q ss_pred             CCcchHHHHHHHHHHHhcCCC--CcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcc
Q 017967          124 PIEGLAAFNKVTAELLFGADN--SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGN  189 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~--~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~  189 (363)
                      +..|.++||+++|+|+.+.++  ..+++++|++  |.|++++++++  +..++.|||.|+|++|+|+.
T Consensus        90 ~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivv--t~Ga~~al~~l--~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         90 DYHGLANFRKAIANFMAEARGGRVKFDADMIVL--SAGATAANEII--MFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             CCCCcHHHHHHHHHHHHHHhCCCCccchhheEE--cCCHHHHHHHH--HHHHcCCCCEEEEeCCCCCC
Confidence            899999999999999988877  5688999988  99999999998  56668899999999999973

>TIGR01814 kynureninase kynureninase

Probab=99.28  E-value=3.5e-10  Score=110.25  Aligned_cols=144  Identities=17%  Similarity=0.102  Sum_probs=101.2

Q ss_pred             cCCcEEEEeccchhHHHHHHHHHHHHhCCC---CEEEEcCCCCcchHH----HHhhCCCCe----EEEecccCCCCCCCH
Q 017967          148 KEQRVATVQGLSGTGSLRLAAALIERYFPG---AKVLISSPTWGNHKN----IFNDARVPW----SEYRYYDPKTVGLDF  216 (363)
Q Consensus       148 ~~~~i~~~~t~ggt~al~l~~~l~~~~~~g---d~Vlv~~P~y~~~~~----~~~~~G~~~----~~v~~~~~~~~~~d~  216 (363)
                      ++++|++  |.|+|++++++..  .++.+|   +.|++....|+....    .++..|+++    +.++.  .+++.+++
T Consensus        85 ~~~~v~~--~~~~t~~l~~~~~--~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~--~~~g~~~~  158 (406)
T TIGR01814        85 KEDEVVV--MNTLTINLHLLLA--SFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP--REEETLRL  158 (406)
T ss_pred             CCCcEEE--eCCchHHHHHHHH--HhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc--CCCCccCH
Confidence            4789988  9999999998833  334454   368888888876333    345778887    45554  33567799


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeE
Q 017967          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~v  296 (363)
                      +.+++.++...++++++++++++|.||..++   +++|.++|+++|+++++|++ +.+..-+.     .+    ....-.
T Consensus       159 ~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~a-q~~G~~~i-----d~----~~~gvD  225 (406)
T TIGR01814       159 EDILDTIEKNGDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLA-HAVGNVPL-----DL----HDWGVD  225 (406)
T ss_pred             HHHHHHHHhcCCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEcc-cccCCccc-----cc----ccCCCC
Confidence            9999888643346788889999999999987   55566779999999999999 44332111     11    122345


Q ss_pred             EEEEcCccccc-ccc
Q 017967          297 LVAQSYSKNLG-LYA  310 (363)
Q Consensus       297 i~~~S~SK~~~-l~G  310 (363)
                      +++.|..|.++ -+|
T Consensus       226 ~~~~s~hK~l~g~pG  240 (406)
T TIGR01814       226 FACWCTYKYLNAGPG  240 (406)
T ss_pred             EEEEcCccccCCCCC
Confidence            78899999874 345

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.27  E-value=5.6e-10  Score=107.97  Aligned_cols=189  Identities=13%  Similarity=0.069  Sum_probs=125.2

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCC-cchHHHHhhCC
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW-GNHKNIFNDAR  198 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y-~~~~~~~~~~G  198 (363)
                      ..|.......+|.+++++++..        +.++.  +.+||.|++++  +...+.|||.|  +..+| ......+...|
T Consensus        72 d~Yagd~s~~~LE~~vAe~lG~--------e~aV~--v~sGTaAl~ll--~~l~v~pGd~V--p~n~~f~Tt~ahI~~~G  137 (460)
T PRK13237         72 EAYAGSRNFYHLEETVQEYYGF--------KHVVP--THQGRGAENLL--SRIAIKPGQYV--PGNMYFTTTRYHQELNG  137 (460)
T ss_pred             hhhcCCCcHHHHHHHHHHHHCC--------CeEEE--eCCHHHHHHHH--HHhCCCCcCEE--CCccchHhhHHHHHhCC
Confidence            4698888899999999999633        45666  89999999986  33346799965  44434 33344367788


Q ss_pred             CCeEEEecc--------cCCCCCCCHHHHHHHHHcCC-CCcEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHhcCCeEEEe
Q 017967          199 VPWSEYRYY--------DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFD  268 (363)
Q Consensus       199 ~~~~~v~~~--------~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~~p~NPT-G~~~s~~~~~~i~~~~~~~~~~ii~D  268 (363)
                      ...+.+..+        ++.++.+|++.+++.+++.. .++.++.+.+++|-. |...+.+++++|.++|+++|+.+|+|
T Consensus       138 a~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~D  217 (460)
T PRK13237        138 GIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFD  217 (460)
T ss_pred             cEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEE
Confidence            865555311        24568899999999998532 233344455677888 78999999999999999999999999


Q ss_pred             cCCC-C---CcCC-CCCCchhHH----HHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHH
Q 017967          269 VAYQ-G---FASG-SLDNDASSV----RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (363)
Q Consensus       269 e~y~-~---~~~~-~~~~~~~~~----~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~  328 (363)
                      .+-. +   |... .......++    +.+..  --..+..|++|.++.+ . -|++  ++.|++.+++
T Consensus       218 aAra~gna~fI~~re~~y~~~~i~ei~~e~~s--~aD~~t~S~~K~~~~~-~-GG~i--~t~D~eL~~~  280 (460)
T PRK13237        218 ATRCVENAYFIKEREEGYQDKSIKEIVHEMFS--YADGCTMSGKKDCLVN-I-GGFL--AMNDEELFDE  280 (460)
T ss_pred             CcchhcChhhhcccccccCCCcHhHHhhhccC--cCcEEEEeCCCCCCCC-C-ceEE--EECCHHHHHH
Confidence            9842 2   1100 000001122    12211  2345567799999754 2 3777  7777774333

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.26  E-value=3.3e-10  Score=104.41  Aligned_cols=186  Identities=19%  Similarity=0.126  Sum_probs=135.7

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCC--CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g  177 (363)
                      .+.++....+...+.-+...+-|.  .......|.+.+|.+-.          .+..+.+.+|+.|+.++  ++.+..+|
T Consensus        34 sy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEG----------G~aa~a~aSG~AA~~~a--i~~la~aG  101 (426)
T COG2873          34 SYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEG----------GVAALAVASGQAAITYA--ILNLAGAG  101 (426)
T ss_pred             eeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhc----------chhhhhhccchHHHHHH--HHHhccCC
Confidence            455666666655543222223343  35567889999998832          33334479999998887  78888999


Q ss_pred             CEEEEcCCCCcchHH----HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          178 AKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       178 d~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      |.|+-.+--|.+...    .++++|+++..++-       .|++.+++++++   +++++++-.-.||-+.+.   ++++
T Consensus       102 D~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~-------~d~~~~~~aI~~---nTkavf~EtigNP~~~v~---Die~  168 (426)
T COG2873         102 DNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP-------DDPENFEAAIDE---NTKAVFAETIGNPGLDVL---DIEA  168 (426)
T ss_pred             CeeEeeccccCchHHHHHHHHHhcCcEEEEeCC-------CCHHHHHHHhCc---ccceEEEEeccCCCcccc---CHHH
Confidence            999999887766544    55789999999864       468999999984   577888788999999876   5677


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      |+++|+++++++|+|+.+..-..-      .+    .+. .--|+++|.||..|--|--+|-+++-+.
T Consensus       169 ia~iAh~~gvpliVDNT~atpyl~------rP----~~h-GADIVvHS~TK~igGhGt~iGG~iVD~G  225 (426)
T COG2873         169 IAEIAHRHGVPLIVDNTFATPYLC------RP----IEH-GADIVVHSATKYIGGHGTAIGGVIVDGG  225 (426)
T ss_pred             HHHHHHHcCCcEEEecCCCcceec------ch----hhc-CCCEEEEeecccccCCccccceEEEeCC
Confidence            888899999999999997653211      01    122 3457799999999989999998855444

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.25  E-value=8e-10  Score=104.34  Aligned_cols=193  Identities=17%  Similarity=0.142  Sum_probs=140.4

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (363)
                      ......+.+.+++....        .+.++  +++|..|+..+  ++.++.+|++|+..+..|.+...+++    .+|++
T Consensus        76 nPt~~~le~~iaal~ga--------~~~l~--fsSGmaA~~~a--l~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie  143 (409)
T KOG0053|consen   76 NPTRDVLESGIAALEGA--------AHALL--FSSGMAAITVA--LLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGE  143 (409)
T ss_pred             CCchHHHHHHHHHHhCC--------ceEEE--ecccHHHHHHH--HHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCce
Confidence            44456777888877433        34655  89999898777  56667899999999999998877765    67888


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      ...++++       +++.+++++.+   ++.++++=+|.||+..+.   ++++|.++|+++|+++|+|+.+.....-+  
T Consensus       144 ~~~vd~~-------~~~~~~~~i~~---~t~~V~~ESPsNPll~v~---DI~~l~~la~~~g~~vvVDnTf~~p~~~~--  208 (409)
T KOG0053|consen  144 GDFVDVD-------DLKKILKAIKE---NTKAVFLESPSNPLLKVP---DIEKLARLAHKYGFLVVVDNTFGSPYNQD--  208 (409)
T ss_pred             eeeechh-------hHHHHHHhhcc---CceEEEEECCCCCccccc---cHHHHHHHHhhCCCEEEEeCCcCcccccC--
Confidence            8777652       57888888873   577888899999998876   45666667889999999999998875432  


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                          +    +.. .-.|++.|.+|.+|--+==+|-++ +..+++    +.+.+.........+.+++....+.+.|+.
T Consensus       209 ----p----L~l-GADIV~hSaTKyi~Ghsdvi~G~i-v~n~~~----~~~~l~~~~~~lg~~~~p~~~~ll~Rglkt  272 (409)
T KOG0053|consen  209 ----P----LPL-GADIVVHSATKYIGGHSDVIGGSV-VLNSEE----LASRLKFLQEDLGWCEDPFDLFLLSRGLKT  272 (409)
T ss_pred             ----h----hhc-CCCEEEEeeeeeecCCcceeeeEE-ecCcHH----HHHHHHHHHHHhcCCCCHHHHHHHhcCcch
Confidence                1    111 245889999999974333344441 333466    666666666677779999988888776653

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.25  E-value=1.1e-09  Score=107.75  Aligned_cols=255  Identities=13%  Similarity=0.038  Sum_probs=141.6

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      +.+++ .+||+..|.-...-|+  -.+.+.+++.+.++..  ..+....+..+.+..+|+.+....... ..+++.+  +
T Consensus        52 D~dG~-~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~--~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f--~  123 (443)
T PRK06058         52 DVDGN-RLIDLGSGIAVTSVGN--SAPRVVEAVREQVARF--THTCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSAL--F  123 (443)
T ss_pred             eCCCC-EEEEcCcchhhhccCC--CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCCC-CCCEEEE--e
Confidence            34443 7888877642122222  2345555555554321  111111122344455555554332110 0146766  8


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CC--------C-----CeEEEecccC--C--CCCCC----
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR--------V-----PWSEYRYYDP--K--TVGLD----  215 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G--------~-----~~~~v~~~~~--~--~~~~d----  215 (363)
                      .+|++|.+.+..+...+...++|+....+|.++...... .+        .     .+..+|....  +  ....+    
T Consensus       124 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (443)
T PRK06058        124 NSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEA  203 (443)
T ss_pred             CCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHH
Confidence            899999999977655554447899999999877543321 11        1     1222221000  0  00011    


Q ss_pred             ----HHHHHHHHHcCCCCcEEEEEcCCCCCCCCC--CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH
Q 017967          216 ----FEGMIADIKAAPGGSFILLHGCAHNPTGID--PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (363)
Q Consensus       216 ----~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~--~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  289 (363)
                          ++.+++.+.  +++. ..++..|-+..|-+  .+.+-+++|.++|++||+++|.||++.+|...+   ..+.. ..
T Consensus       204 ~~~~~~~l~~~~~--~~~i-Aavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG---~~fa~-~~  276 (443)
T PRK06058        204 AARAITVIEKQVG--ADNL-AAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG---AWFAC-EH  276 (443)
T ss_pred             HHHHHHHHHHhhC--CCce-EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCh---hhhHH-Hh
Confidence                122222221  2333 44446777777533  458889999999999999999999999985432   12222 22


Q ss_pred             HhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       290 ~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      .+-.+++++   ++|.++ .|+++|++  ++. ++    +.+.+........++.+++++.++...|+.
T Consensus       277 ~gv~PDiv~---~gK~l~-~G~Pi~av--~~~-~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~  334 (443)
T PRK06058        277 EGIVPDLIT---TAKGIA-GGLPLSAV--TGR-AE----IMDAPHPGGLGGTYGGNPVACAAALAAIET  334 (443)
T ss_pred             cCCCCCEEE---Eccccc-CCCccEEE--EEc-HH----HHhhccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            222334443   379999 89999999  665 55    445444333344557788888888776654

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.25  E-value=2.8e-10  Score=104.94  Aligned_cols=207  Identities=17%  Similarity=0.092  Sum_probs=135.8

Q ss_pred             cccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEE
Q 017967          101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV  180 (363)
Q Consensus       101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~V  180 (363)
                      .+.+.+++++.+.... ....|+...-...+.+.+++.+..        ..+++  +.+||++..++  +...+.||+.|
T Consensus        11 g~~~~m~eam~~a~~~-~~~~YG~D~~~~~~e~~~ae~~g~--------~a~~F--v~sGT~aN~la--l~~~~~~~~~v   77 (342)
T COG2008          11 GPTPEMREALAAANAV-GDDVYGEDPTTNALEQRIAELFGK--------EAALF--VPSGTQANQLA--LAAHCQPGESV   77 (342)
T ss_pred             CCCHHHHHHHHhcccc-CCCCCCCCHHHHHHHHHHHHHhCC--------ceEEE--ecCccHHHHHH--HHHhcCCCCeE
Confidence            3567888888765422 236687777777777777777532        46666  89999999888  55667899999


Q ss_pred             EEcCCCCcchHH--HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc----CCCCcEEEEEcCCCCCCCCCCCHHHHHHH
Q 017967          181 LISSPTWGNHKN--IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA----APGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (363)
Q Consensus       181 lv~~P~y~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~~~~~~i~~p~NPTG~~~s~~~~~~i  254 (363)
                      ++..-.+....+  ..+.++ .+..++..+..++.+++|+++..+..    +...+.++++ |.+|--|+++|.+++++|
T Consensus        78 i~~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e-~~~te~GtVy~l~el~~i  155 (342)
T COG2008          78 ICHETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLE-NTATEGGTVYPLDELEAI  155 (342)
T ss_pred             EEeccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEe-eccCCCceecCHHHHHHH
Confidence            988766533222  112221 22334443456789999999998874    2233444443 444466999999999999


Q ss_pred             HHHHHhcCCeEEEecCC--CCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHH
Q 017967          255 ADVIQEKNHIPFFDVAY--QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ  332 (363)
Q Consensus       255 ~~~~~~~~~~ii~De~y--~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~  332 (363)
                      .++|+++|+.+..|.+=  ......+  ++....    ..+-+++ ..++||..+.+   +|.+  +..|.+.++++...
T Consensus       156 ~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~----~~~~D~v-~~~~tK~g~~~---~gAi--v~gn~~~~~~a~~~  223 (342)
T COG2008         156 SAVCKEHGLPLHMDGARLANALVALG--VALKTI----KSYVDSV-SFCLTKGGGAP---VGAI--VFGNRDFAKRARRW  223 (342)
T ss_pred             HHHHHHhCCceeechHHHHHHHHHcC--CCHHHH----HhhCCEE-EEecccCCcce---eeeE--EEcCHHHHHHHHHH
Confidence            99999999999999982  1112111  112222    2233444 55679999876   5888  78889855555443


Q ss_pred             HH
Q 017967          333 LK  334 (363)
Q Consensus       333 l~  334 (363)
                      .+
T Consensus       224 rK  225 (342)
T COG2008         224 RK  225 (342)
T ss_pred             HH
Confidence            33

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.23  E-value=6.9e-11  Score=113.44  Aligned_cols=192  Identities=18%  Similarity=0.098  Sum_probs=124.0

Q ss_pred             Ccc-hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEE
Q 017967          125 IEG-LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (363)
Q Consensus       125 ~~G-~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (363)
                      +.| +.+..+.+|+.+...       +-.++  ++|+|.++..+  ++..+.|||+|+++.-++-.....+...|+++++
T Consensus        64 p~G~I~eAe~~aA~~fGAd-------~t~fl--vnGsT~g~~a~--i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvy  132 (417)
T PF01276_consen   64 PEGIIKEAEELAARAFGAD-------KTFFL--VNGSTSGNQAM--IMALCRPGDKVLVDRNCHKSVYNALILSGAIPVY  132 (417)
T ss_dssp             TBTHHHHHHHHHHHHHTES-------EEEEE--SSHHHHHHHHH--HHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEE
T ss_pred             CccHHHHHHHHHHHhcCCC-------eEEEE--ecCchHHHHHH--HHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEE
Confidence            444 456666777775432       45555  89999998877  6777899999999999999999999999999999


Q ss_pred             EecccCCC---CCCCH-----HHHHHHHHcCCCCcE--EEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC
Q 017967          204 YRYYDPKT---VGLDF-----EGMIADIKAAPGGSF--ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (363)
Q Consensus       204 v~~~~~~~---~~~d~-----~~l~~~l~~~~~~~~--~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~  273 (363)
                      ++..++..   .++++     +.+++++++.|....  ++++++|+ =-|+++.   +++|+++|+++++.|++||+|..
T Consensus       133 i~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT-Y~Gv~~d---i~~I~~~~h~~~~~llvDEAhGa  208 (417)
T PF01276_consen  133 IPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT-YYGVCYD---IKEIAEICHKHGIPLLVDEAHGA  208 (417)
T ss_dssp             EEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE----HHHHHHHHCCTECEEEEE-TT-T
T ss_pred             ecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC-CCeEEEC---HHHHHHHhcccCCEEEEEccccc
Confidence            87642211   34566     999999998775433  24434432 2388864   66677789999999999999865


Q ss_pred             C-cCCCCCCchhHHHHH-H--hcCCeEEEEEcCccccccccccceEEEEeeCCh-hHHHHHHHHHHhh
Q 017967          274 F-ASGSLDNDASSVRLF-A--TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS-DLAARVKSQLKRL  336 (363)
Q Consensus       274 ~-~~~~~~~~~~~~~~~-~--~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~-~~~~~~~~~l~~~  336 (363)
                      . .|.+...   +...+ +  .....++++.|..|.+  +++.-+.++-+-.+. -..+++.+.+..+
T Consensus       209 h~~F~~lp~---~a~~~gad~~~~~~~~vvqS~HKtL--~altQts~lh~~~~~~v~~~~~~~~l~~~  271 (417)
T PF01276_consen  209 HFGFHPLPR---SALALGADRPNDPGIIVVQSTHKTL--PALTQTSMLHVKGDRIVDHERVNEALSMH  271 (417)
T ss_dssp             TGGCSGGGT---TCSSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEEEEETCCCTTHHHHHHHHHHH
T ss_pred             cccCCCCcc---chhhccCccccccceeeeechhhcc--cccccceEEEecCCCcccHHHHHHHHHHH
Confidence            4 3321110   00000 1  1234789999999988  477777775555543 3456676666654

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.19  E-value=1.8e-09  Score=105.87  Aligned_cols=253  Identities=12%  Similarity=0.087  Sum_probs=138.6

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCC---CCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK---EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~---~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      .+++ .++|+..|.-...-|+.  .+.+.+++.+.++.....   .| +.    +.+..+|+.+......  .-+++.+ 
T Consensus        39 ~dG~-~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~~~~-~~----~~~~~la~~l~~~~p~--~~~~v~f-  107 (423)
T PRK05964         39 ADGR-ELIDAISSWWVATHGHN--HPYIDQAIREQLDRLDHVIFAGF-TH----EPAERLAQRLVALTPG--GLDHVFF-  107 (423)
T ss_pred             CCCC-EEEEcchhHHhccCCCC--CHHHHHHHHHHHhhCCCcccccc-CC----HHHHHHHHHHHHhCCC--CCCEEEE-
Confidence            3443 78888776432222332  356666665555331101   12 22    2333444444332211  1257877 


Q ss_pred             eccchhHHHHHHHHHHHHh----C-CC-CEEEEcCCCCcchHHHHhh-CC------------CCeEEEecccCCCCCCCH
Q 017967          156 QGLSGTGSLRLAAALIERY----F-PG-AKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYDPKTVGLDF  216 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~----~-~g-d~Vlv~~P~y~~~~~~~~~-~G------------~~~~~v~~~~~~~~~~d~  216 (363)
                       +.+|++|.+.+..+.+.+    . +| .+|+...-+|.+....... .+            ..+..++....+....++
T Consensus       108 -~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  186 (423)
T PRK05964        108 -SDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATL  186 (423)
T ss_pred             -eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHH
Confidence             999999999987765554    1 33 5788888888665432211 11            012223321111011227


Q ss_pred             HHHHHHHHcCCCCcEEEEEcC-CCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC
Q 017967          217 EGMIADIKAAPGGSFILLHGC-AHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i~~-p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  294 (363)
                      +.+++.+.+.++....+++-. .+...|... +.+.+++|.++|++||+++|+||++.++...+   ..... ......+
T Consensus       187 ~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G---~~~a~-~~~~v~p  262 (423)
T PRK05964        187 DALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG---TLFAC-EQAGVSP  262 (423)
T ss_pred             HHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---chhHH-HhcCCCC
Confidence            788888865444444444332 367778766 89999999999999999999999998875432   11111 1112223


Q ss_pred             eEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhh------hccccCCCchHHHHHHhcccc
Q 017967          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL------ARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       295 ~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~------~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ++   -+++|.++..++++|++  ++ +++    +.+.+...      .....++.++++..++...|+
T Consensus       263 Di---~~~~K~l~gG~~p~~av--~~-~~~----i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~  321 (423)
T PRK05964        263 DI---MCLSKGLTGGYLPLAAT--LC-TAE----IFEAFYSDDRAKAFMHSPSYTANPLACAAANASLD  321 (423)
T ss_pred             Ce---eeeehhhhcCcccceEE--EE-cHH----HHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHH
Confidence            33   36789998433899998  55 466    44444311      011122455666655555444

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.16  E-value=4.2e-09  Score=99.84  Aligned_cols=198  Identities=16%  Similarity=0.079  Sum_probs=128.4

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCC-Cc-chHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLP-IE-GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~-~~-G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~  175 (363)
                      |+..+.+.|++++..-.   . .++.+ .. -..+.++.+...+...      ...++ ..+.+||.+++.+  +.+++.
T Consensus        12 GP~~v~~~V~~am~~~~---~-~h~s~~F~~~~~~~~~~L~~v~~t~------~~~~~-ll~gsGt~amEAa--v~sl~~   78 (383)
T COG0075          12 GPVPVPPRVLLAMARPM---V-GHRSPDFVGIMKEVLEKLRKVFGTE------NGDVV-LLSGSGTLAMEAA--VASLVE   78 (383)
T ss_pred             CCCCCCHHHHHHhcCCC---C-CCCCHHHHHHHHHHHHHHHHHhcCC------CCcEE-EEcCCcHHHHHHH--HHhccC
Confidence            45667788888764322   1 22322 11 1233333443333222      11332 3478899998888  677788


Q ss_pred             CCCEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          176 PGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      |||+|++..-+..+.  .++++++|.+++.+..  +++..+|+++++++|++.++ ..++.+++.-.+||...+   +++
T Consensus        79 pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~--~wg~~v~p~~v~~~L~~~~~-~~~V~~vH~ETSTGvlnp---l~~  152 (383)
T COG0075          79 PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV--EWGEAVDPEEVEEALDKDPD-IKAVAVVHNETSTGVLNP---LKE  152 (383)
T ss_pred             CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhcCCC-ccEEEEEeccCcccccCc---HHH
Confidence            999999999887554  6688999999999987  56778999999999996544 445666677788998874   566


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc-ccccceEEEEeeCChhHHHHH
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l-~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      |.++|++||.++|+|.+ ..+.-.+...+.        -+.+ +++.+-=|.++. ||+  |.+  ..+ ++..+++
T Consensus       153 I~~~~k~~g~l~iVDaV-sS~Gg~~~~vd~--------wgiD-v~itgSQK~l~~PPGl--a~v--~~S-~~a~e~~  214 (383)
T COG0075         153 IAKAAKEHGALLIVDAV-SSLGGEPLKVDE--------WGID-VAITGSQKALGAPPGL--AFV--AVS-ERALEAI  214 (383)
T ss_pred             HHHHHHHcCCEEEEEec-ccCCCcccchhh--------cCcc-EEEecCchhccCCCcc--cee--EEC-HHHHHHH
Confidence            77779999999999999 444332221111        2234 445555888865 675  666  444 5543333

>PRK02769 histidine decarboxylase; Provisional

Probab=99.16  E-value=1.9e-09  Score=103.79  Aligned_cols=175  Identities=17%  Similarity=0.125  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccC
Q 017967          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP  209 (363)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~  209 (363)
                      +.++.+|+++...      ++++....|.|||++..++........+++.|++++-.+......++..|++.+.++.+  
T Consensus        69 ~~~~~~a~l~g~~------~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~--  140 (380)
T PRK02769         69 DVMNFFAELFKIP------FNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSL--  140 (380)
T ss_pred             HHHHHHHHHhCCC------CCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccC--
Confidence            4455556554321      23431223899999966552222224578999999999999999999999999889884  


Q ss_pred             CCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcC---CeEEEecCCCCCcCCCCCCchhHH
Q 017967          210 KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN---HIPFFDVAYQGFASGSLDNDASSV  286 (363)
Q Consensus       210 ~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~---~~ii~De~y~~~~~~~~~~~~~~~  286 (363)
                      .++.+|++.|++.+++...++++++.+.++|+||.+.+.++   |.++|+++|   +++.+|.++..+...-.+ ....+
T Consensus       141 ~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~---I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~-~~~~~  216 (380)
T PRK02769        141 PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKE---IQEILKKIGIDDYYIHADAALSGMILPFVN-NPPPF  216 (380)
T ss_pred             CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHH---HHHHHHHhCCCceEEEEEecccceeecccC-ccccC
Confidence            36779999999999864345778888999999999977555   566689998   699999999876432110 00011


Q ss_pred             HHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       287 ~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                       .+ .. .-..+..|..|.++. -..+|.+  +..+
T Consensus       217 -d~-~~-~vDsis~s~HK~~~~-P~g~G~l--~~r~  246 (380)
T PRK02769        217 -SF-AD-GIDSIAISGHKFIGS-PMPCGIV--LAKK  246 (380)
T ss_pred             -Cc-cC-CCCEEEECCcccCCC-CCCcEEE--EEeh
Confidence             11 11 234557788998763 3447888  6653

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.14  E-value=1e-08  Score=100.98  Aligned_cols=255  Identities=14%  Similarity=0.055  Sum_probs=138.8

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CC-CCCCCcchHHHHHHHHHHHhcCCCCcccCCc-EEEE
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NK-EYLPIEGLAAFNKVTAELLFGADNSVLKEQR-VATV  155 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~-~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~-i~~~  155 (363)
                      .+++ .++|+..|.-...-|+  -.+.+.+++.+.+.... .. .|.+.    +.+..+|+.+...........+ +++ 
T Consensus        36 ~dG~-~ylD~~~g~~~~~lGh--~~p~i~~ai~~q~~~~~~~~~~~~~~----~~~~~lae~L~~~~p~~~~~~~~~f~-  107 (442)
T TIGR00709        36 VEGK-EYLDFLAGAGTLALGH--NHPNMKQKILDYLQSGLPLHTLDLTT----PLKDAFIEALLNIIPKRKMDYKLQFP-  107 (442)
T ss_pred             CCCC-EEEEccccHhhhcCCC--CCHHHHHHHHHHHHhccCccccccCc----HHHHHHHHHHHHhCCCcCCCccEEEe-
Confidence            3443 7888877753222222  23455666555443211 11 11222    3333444444332211000123 333 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCC-------C-----CeEEEecccCCC--CC----CCH
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR-------V-----PWSEYRYYDPKT--VG----LDF  216 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G-------~-----~~~~v~~~~~~~--~~----~d~  216 (363)
                       +++|++|.+.+..+...+....+|+...-+|.+....+. ..|       .     .+..++..+...  ++    .+.
T Consensus       108 -~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (442)
T TIGR00709       108 -GPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGS  186 (442)
T ss_pred             -CCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHH
Confidence             689999999997765555434678888888877654332 111       0     122233211100  00    011


Q ss_pred             ----HHHHHHHHc---C-CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH
Q 017967          217 ----EGMIADIKA---A-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (363)
Q Consensus       217 ----~~l~~~l~~---~-~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  288 (363)
                          +.+++.+..   . .+...+++-+.++|+....++.+-+++|.++|+++|+++|.||++.+|...+   ..+....
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~~~  263 (442)
T TIGR00709       187 NASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG---TMFAFEH  263 (442)
T ss_pred             HHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC---chhHHHH
Confidence                223333321   1 1334455555566665566899999999999999999999999999996543   2333333


Q ss_pred             HHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       289 ~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      + .-.+++++   |+|.++ .|+++|++  ++. ++ ++.+    ........++.+++++.++...|+.
T Consensus       264 ~-gv~PDiv~---~gK~l~-~G~Pigav--~~~-~~-~~~~----~~~~~~~T~~gnpla~aaa~a~L~~  320 (442)
T TIGR00709       264 A-GIEPDFVV---MSKAVG-GGLPLAVL--LIA-PE-FDAW----QPAGHTGTFRGNQLAMVTGTEALNY  320 (442)
T ss_pred             c-CCCCcEEE---Eccccc-CCcccEEE--EEc-hH-Hhcc----CCCcCCCCCCcCHHHHHHHHHHHHH
Confidence            2 33344444   799999 59999999  665 44 2222    1111234456788888887776653

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.12  E-value=9.2e-09  Score=100.53  Aligned_cols=218  Identities=13%  Similarity=0.090  Sum_probs=124.7

Q ss_pred             chhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHH-cc-CCCCCC----CCCcchHHHHH----HHHHH
Q 017967           69 PILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ER-GENKEY----LPIEGLAAFNK----VTAEL  138 (363)
Q Consensus        69 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~-~~~~~Y----~~~~G~~~lr~----aia~~  138 (363)
                      .++++.+.-...+ .+.++|-..++       ++.|.+++++.... .. +....+    .......+|.+    .++++
T Consensus        15 ~~~~~~~~~~~~~-~~~~~l~~sen-------~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l   86 (416)
T PRK13034         15 EVFAAINKELERQ-QDHLELIASEN-------FTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQL   86 (416)
T ss_pred             HHHHHHHHHHHHH-hcCeeeccccc-------CCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHH
Confidence            4566654333222 26777775543       34677887776653 21 110111    11234566776    88887


Q ss_pred             HhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcch-HHHHhh--CCCCe--EEEecccCCCCC
Q 017967          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH-KNIFND--ARVPW--SEYRYYDPKTVG  213 (363)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~-~~~~~~--~G~~~--~~v~~~~~~~~~  213 (363)
                      +..        +...+ .+++|+.|+..+  +..++.|||+|++...+|... ..-++.  .+...  ..++.+ ..++.
T Consensus        87 ~g~--------~~alv-~~~SG~~A~~~~--l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~  154 (416)
T PRK13034         87 FGC--------DYANV-QPHSGSQANGAV--YLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVD-RLTGL  154 (416)
T ss_pred             hCC--------CceEE-ecCCcHHHHHHH--HHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccc-cccCC
Confidence            533        23322 257999998877  566688999999999988762 111111  11111  233332 23567


Q ss_pred             CCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC
Q 017967          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (363)
Q Consensus       214 ~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~  293 (363)
                      +|++.+++.+...  +++++++..+.+  |...   ++.+|.++|+++|+++|+|++..--..... .   ..   ....
T Consensus       155 ~d~~~le~~l~~~--~~klVi~~~~~~--g~~~---dl~~l~~la~~~g~~livD~Aha~G~~~~g-~---~~---~~~~  220 (416)
T PRK13034        155 IDYDEVEELAKEH--KPKLIIAGFSAY--PREL---DFARFREIADEVGALLMVDMAHIAGLVAAG-E---HP---NPFP  220 (416)
T ss_pred             cCHHHHHHHHhhc--CCeEEEECCCcc--cccc---CHHHHHHHHHHcCCEEEEeCcccccCcccC-C---CC---CCCC
Confidence            8999999988642  355666555443  4433   566777779999999999998432222110 0   00   0111


Q ss_pred             CeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       294 ~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      .-.+++.|++|.++.+.  -|++  ++.++.
T Consensus       221 ~~Di~~~s~~K~l~g~~--GG~v--~~~~~~  247 (416)
T PRK13034        221 HAHVVTTTTHKTLRGPR--GGMI--LTNDEE  247 (416)
T ss_pred             CceEEEEeCcccCCCCC--CeEE--EECcHH
Confidence            24588999999994232  3666  555554

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.11  E-value=6.5e-09  Score=101.56  Aligned_cols=203  Identities=12%  Similarity=0.052  Sum_probs=128.0

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh------C
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY------F  175 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~------~  175 (363)
                      +.+.+.+.+...+.... .++.......++.+.+.+++.+..+.+-..+++....|.|||+|..++.......      .
T Consensus        53 ~~p~~~~~~~~~l~~~~-~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~  131 (431)
T TIGR01788        53 MEPEARKLMDETINKNM-IDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEA  131 (431)
T ss_pred             CCHHHHHHHHHHHhcCC-CCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556666666553221 1222222233454444455444333321113565545899999998873222100      1


Q ss_pred             CC-----CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHH
Q 017967          176 PG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ  250 (363)
Q Consensus       176 ~g-----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~  250 (363)
                      .|     ..|++++-.+..+...++..|++++.+|+++ +++.+|++.|++++.+   ++.++++...+|.||.+.+.++
T Consensus       132 ~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~---~t~lV~~t~g~t~tG~idpi~~  207 (431)
T TIGR01788       132 AGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVDE---NTIGVVCILGTTYTGEYEDVKA  207 (431)
T ss_pred             cCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHhh---CCeEEEEEeCCCCCcccCCHHH
Confidence            12     3688888899999999999999999999853 3457899999999984   4678888889999999987655


Q ss_pred             HHHHHHHHHhc------CCeEEEecCCCCCc----CCCCCCchhHHHHHHhcCCeEEEEEcCcccc-ccccccceEEEEe
Q 017967          251 WEKIADVIQEK------NHIPFFDVAYQGFA----SGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVV  319 (363)
Q Consensus       251 ~~~i~~~~~~~------~~~ii~De~y~~~~----~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~l~G~RvG~i~~v  319 (363)
                         |.++|+++      ++++.+|.+|.++.    .+..   ...   + ....-..+..|..|.+ +..|  +|.+  +
T Consensus       208 ---I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~---~~~---~-~~~~~DSis~s~HK~~~~P~g--~G~l--~  273 (431)
T TIGR01788       208 ---LNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDL---EWD---F-RLPRVKSINVSGHKYGLVYPG--VGWV--I  273 (431)
T ss_pred             ---HHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCc---hhh---c-CCCCceEEEECchhccCCCCC--cEEE--E
Confidence               55568888      89999999998643    2210   111   1 1111233577889976 5444  6888  5


Q ss_pred             eCCh
Q 017967          320 CSSS  323 (363)
Q Consensus       320 ~~~~  323 (363)
                      ..++
T Consensus       274 ~r~~  277 (431)
T TIGR01788       274 WRDE  277 (431)
T ss_pred             EeCh
Confidence            5544

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.09  E-value=3e-09  Score=95.21  Aligned_cols=202  Identities=17%  Similarity=0.155  Sum_probs=136.2

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC-C
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF-P  176 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~-~  176 (363)
                      +-+.+-+.+++++.......  .-|+......+|.+.+|+.+.+       +..+++   .+||.+..++  ++..+. +
T Consensus        30 TvT~PTdeMr~am~eA~vgD--dVyGeD~tt~rLE~~vA~l~GK-------EAgLFv---~SGTmgNlla--Im~Hc~~r   95 (384)
T KOG1368|consen   30 TVTVPTDEMRRAMAEASVGD--DVYGEDPTTNRLEQRVAELFGK-------EAGLFV---PSGTMGNLLA--IMVHCHQR   95 (384)
T ss_pred             cccCChHHHHHHHhhcccCc--ccccCCccHHHHHHHHHHHhCc-------cceeee---cccccccHHH--HHHHhcCC
Confidence            33556788998887765443  3466666778999999999644       244444   5566665555  455565 9


Q ss_pred             CCEEEEcCCCC-cchHH--HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC-----CCCcEEEEEcCCCCCCC-CCCC
Q 017967          177 GAKVLISSPTW-GNHKN--IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-----PGGSFILLHGCAHNPTG-IDPT  247 (363)
Q Consensus       177 gd~Vlv~~P~y-~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~~~~~~i~~p~NPTG-~~~s  247 (363)
                      |..|++-+-.+ ..|++  +....|+.+..+.-  ++++.+++++++.++...     -+.++++.+-|-||-+| .+++
T Consensus        96 g~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~--e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlP  173 (384)
T KOG1368|consen   96 GSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKN--ENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLP  173 (384)
T ss_pred             CceEEeccchheeehhccChhhhccceeEeeee--CCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEee
Confidence            99999887654 22222  33456677776654  667889999999999842     23578888889888777 9999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhH
Q 017967          248 PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL  325 (363)
Q Consensus       248 ~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~  325 (363)
                      .+++.++.++|+++++-+-.|.+- -|.-.  -....++..+....+.|=+  =|||.+|.|   ||-+  +..+.+.
T Consensus       174 le~~~~v~~lak~~glkLH~DGAR-i~NAa--vasgV~vk~i~~~fDSVsi--CLSKglgAP---VGSV--iVG~k~F  241 (384)
T KOG1368|consen  174 LEELDRVKALAKRHGLKLHMDGAR-IFNAA--VASGVPVKKICSAFDSVSI--CLSKGLGAP---VGSV--IVGSKDF  241 (384)
T ss_pred             HHHHHHHHHHHhccCCeeecchhh-hhhHH--HHcCCCHHHHHHhhhhhhh--hhhccCCCC---cccE--EEccHHH
Confidence            999999999999999999999982 22100  0011233333332233222  268999877   8998  6777773

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.07  E-value=3.5e-08  Score=97.21  Aligned_cols=249  Identities=16%  Similarity=0.157  Sum_probs=134.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCC--CCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK--EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.-...-|+  -.+.+.+++.+.++.....  .+.......+|-+.+++..-..     ..++|.+  +++|+
T Consensus        43 ~ylD~~~g~~~~~lGH--~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-----~~~~v~f--~~SGs  113 (445)
T PRK08593         43 TYIDLLASASSQNVGH--APPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGD-----FEKRVTF--GLSGS  113 (445)
T ss_pred             EEEECCccHHhhcCCC--CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC-----CCCEEEE--CCchH
Confidence            6788865532112222  2345555555544321101  1112223344555555442110     0147877  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HHhhCC-------------CCeEEEecccCCC--CC-CC-------HH
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDAR-------------VPWSEYRYYDPKT--VG-LD-------FE  217 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~-~~~~~G-------------~~~~~v~~~~~~~--~~-~d-------~~  217 (363)
                      +|.+.+..+.+.+....+|+...-+|.+... .+...+             -.+..+|..+...  +. .+       ++
T Consensus       114 eA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  193 (445)
T PRK08593        114 DANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLA  193 (445)
T ss_pred             HHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHH
Confidence            9999996655444333568888877766532 221111             0123333211100  00 11       23


Q ss_pred             HHHHHHHcC--CCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC
Q 017967          218 GMIADIKAA--PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (363)
Q Consensus       218 ~l~~~l~~~--~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  294 (363)
                      .+++.+...  ++....+++-..+...|.. .+.+-+++|.++|+++|+++|.||++.+|...+   .......+ .-.+
T Consensus       194 ~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG---~~~a~~~~-gv~p  269 (445)
T PRK08593        194 PLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTG---KWSSISHF-NITP  269 (445)
T ss_pred             HHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hHHHHHhc-CCCC
Confidence            444444321  2345566666667777876 788999999999999999999999998885432   12222222 2223


Q ss_pred             eEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccc
Q 017967          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       295 ~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                      +   +-+|+|.++ .|+++|++  ++. ++    +.+.+.........+.++++..++...|
T Consensus       270 D---i~t~gK~l~-~G~p~gav--~~~-~~----i~~~~~~~~~~~T~~~~pl~~aaa~a~l  320 (445)
T PRK08593        270 D---LMSFGKSLA-GGMPMSAI--VGR-KE----IMESLEAPAHLFTTGANPVSCAAALATI  320 (445)
T ss_pred             C---Eeeeccccc-CCcccEEE--EEc-HH----HHhhhccCCCCCCCCCCHHHHHHHHHHH
Confidence            3   337899998 79999999  665 66    4444432212223345566666554444

>PLN03032 serine decarboxylase; Provisional

Probab=99.07  E-value=5.5e-09  Score=100.06  Aligned_cols=174  Identities=15%  Similarity=0.065  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHhcCCCCcccCCcE--EEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEec
Q 017967          129 AAFNKVTAELLFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY  206 (363)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i--~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~  206 (363)
                      .+.++.+++++.    .  +++++  ++  |.|||+|..++....+...++..|+++.-.+......++..|++++.+|+
T Consensus        69 ~~v~~~ia~llg----~--~~~~~~G~f--TsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~  140 (374)
T PLN03032         69 VGVLDWFARLWE----L--EKDEYWGYI--TTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPT  140 (374)
T ss_pred             HHHHHHHHHHhC----C--CCccCCEEE--eCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeee
Confidence            344455555542    2  24555  55  89999998776333222235668898888898899999999999999998


Q ss_pred             ccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcC-----CeEEEecCCCCCcCCCCCC
Q 017967          207 YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN-----HIPFFDVAYQGFASGSLDN  281 (363)
Q Consensus       207 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~-----~~ii~De~y~~~~~~~~~~  281 (363)
                      +  .++.+|++.|++.+++....+.+++++..+|+||.+-+.+   +|.++|+++|     +++.+|.+|..+...-. .
T Consensus       141 d--~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~---eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~-~  214 (374)
T PLN03032        141 L--PSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLD---RILRILKELGYTEDRFYIHCDGALFGLMMPFV-S  214 (374)
T ss_pred             C--CCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHH---HHHHHHHHhCCCCCCeeEEEEccchhhhhhcc-C
Confidence            4  4678999999999986433567777788999999996655   5666688886     58999999876532100 0


Q ss_pred             chhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       282 ~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      ..+.+ .+. . .-..+..|..|.++. -.-+|.+  +..+
T Consensus       215 ~~~~~-~~~-~-~vDSis~s~HK~~g~-P~g~G~l--l~r~  249 (374)
T PLN03032        215 RAPEV-TFR-K-PIGSVSVSGHKFLGC-PMPCGVA--LTRK  249 (374)
T ss_pred             CCccc-CCC-c-CCcEEEECcccccCC-CcCeEEE--EEEc
Confidence            00000 111 1 123356788998873 3346888  5554

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.07  E-value=2.3e-08  Score=97.67  Aligned_cols=222  Identities=12%  Similarity=0.006  Sum_probs=124.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCC-CC-cccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD-NS-VLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~-~~-~~~~~~i~~~~t~ggt  161 (363)
                      .+||+..|.-...-|+  -.+.+.+++.+.+.... ..+ ......+.+..+|+.+.... .+ .. .+++.+ .+++|+
T Consensus        36 ~ylD~~~g~~~~~lGh--~~p~v~~ai~~ql~~~~-~~~-~~~~~~~~~~~lae~l~~~~~~~~~~-~~~~~f-~~~sGs  109 (412)
T TIGR02407        36 EYIDFFAGAGALNYGH--NNPKLKQALIDYLADDG-IIH-SLDMATEAKREFLETFNEIILKPRGL-DYKVQF-PGPTGT  109 (412)
T ss_pred             EEEEcccchhhccCCC--CCHHHHHHHHHHHhhcc-cee-ccccCcHHHHHHHHHHHHhccCccCC-CceEEE-eCCCch
Confidence            7888876642221222  24566666655543210 101 11111233344444443321 00 01 123433 148999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hC---------CC---CeEEEecccCCCC-CCCHHHHHHHHHcCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DA---------RV---PWSEYRYYDPKTV-GLDFEGMIADIKAAP  227 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~---------G~---~~~~v~~~~~~~~-~~d~~~l~~~l~~~~  227 (363)
                      +|.+.+..+...+....+|+...-+|.+....+. ..         |.   .+..+|..+.... .-+++.+++.+.+..
T Consensus       110 eA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~  189 (412)
T TIGR02407       110 NAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSS  189 (412)
T ss_pred             HHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhcc
Confidence            9999997665544334678888888866643221 11         11   2233333110000 023667887776422


Q ss_pred             ---CCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCc
Q 017967          228 ---GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (363)
Q Consensus       228 ---~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  303 (363)
                         +....+++-.-+++.|. ..+.+-+++|.++|+++|+++|+||++.+|.-.+   ....... ..-.++++   +||
T Consensus       190 ~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~~~-~~v~PDi~---~~~  262 (412)
T TIGR02407       190 SGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG---TFFSFEP-AGIEPDIV---CLS  262 (412)
T ss_pred             CCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhHHhcc-cCCCCCEE---Eec
Confidence               23456666666888998 6789999999999999999999999998874322   1111111 12223333   578


Q ss_pred             cccccc-cccceEEEEeeC
Q 017967          304 KNLGLY-AERIGAMNVVCS  321 (363)
Q Consensus       304 K~~~l~-G~RvG~i~~v~~  321 (363)
                      |.++ + |+|+|++  +++
T Consensus       263 K~lg-~~G~pigav--~~~  278 (412)
T TIGR02407       263 KSIS-GYGLPLALT--LIK  278 (412)
T ss_pred             hhcc-CCccceeEE--EEc
Confidence            9998 6 9999999  665

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.05  E-value=1.2e-09  Score=100.18  Aligned_cols=193  Identities=12%  Similarity=0.079  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh--CCC--CEEEEcCCCCcchHHHHhhCCCCeEE
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FPG--AKVLISSPTWGNHKNIFNDARVPWSE  203 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~--~~g--d~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (363)
                      .++|.+.|.++-....+...+...|++  ..|+|+.++.+...+.-.  ..+  -.|+...|.|+.|......+.-....
T Consensus        45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~--GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~  122 (363)
T PF04864_consen   45 SPELERQIRRLHRVVGNAVTDGRYIVF--GTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYK  122 (363)
T ss_dssp             -HHHHHHHHHHHHHH-SB--TTSEEEE--ECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEE
T ss_pred             cHHHHHHHHHHHHHhccccccCcEEEE--cCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcc
Confidence            478888887775444444444556655  888888877662222222  111  37999999999999776543322222


Q ss_pred             EecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCch
Q 017967          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (363)
Q Consensus       204 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~  283 (363)
                      ..-+ ...+       .   ........+=++++||||.|..-     +.+   ++..+..+|.|-+|..-.|..     
T Consensus       123 w~Gd-a~~~-------~---~~~~~~~~IElVTSPNNPDG~lr-----~~V---~~g~~~k~I~D~AYYWPhyTp-----  178 (363)
T PF04864_consen  123 WAGD-ASNF-------K---NSDNPSPYIELVTSPNNPDGQLR-----EAV---LNGSSGKVIHDLAYYWPHYTP-----  178 (363)
T ss_dssp             EEEE-CCCG-------T---T-S-CCGEEEEEESS-TTT-----------S---STTTEEEEEEE-TT-STTTS------
T ss_pred             cccc-HHhh-------c---cCCCCCCeEEEEeCCCCCccccc-----chh---cCCCCcceeeeeeeecccccc-----
Confidence            2211 1112       1   11113577888899999999652     222   345567789999998877652     


Q ss_pred             hHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       284 ~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                        +.   ...+..|-++++||.-|-+|.|+||.  +..|+++    .+.+......+..++|.=+|.=++++|+
T Consensus       179 --I~---~~aD~DiMLFT~SK~TGHAGSR~GWA--lVKD~~V----a~kM~~y~~lnTiGvS~dsQLRa~kiLk  241 (363)
T PF04864_consen  179 --IT---APADHDIMLFTLSKLTGHAGSRFGWA--LVKDEEV----AKKMTKYMELNTIGVSRDSQLRALKILK  241 (363)
T ss_dssp             -------S-B--SEEEEEHHHHCS-GGG-EEEE--EES-HHH----HHHHHHHHHHHCSS--HHHHHHHHHHHH
T ss_pred             --cC---CCCCCceEEEEEecccCcccccccee--eecCHHH----HHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence              11   23366788999999999999999999  8999994    4444445556677999999998887765

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK06541 hypothetical protein; Provisional

Probab=99.04  E-value=4.1e-08  Score=97.03  Aligned_cols=223  Identities=14%  Similarity=0.101  Sum_probs=123.7

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC-C--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-E--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      .+++ .+||+..|.-...-|+  -.+.+.+++.+.+... .  ...| ......+|-+.+++..    ..  .-+++.+ 
T Consensus        49 ~dG~-~ylD~~~g~~~~~lGh--~~p~v~~Av~~q~~~~~~~~~~~~-~~~~~~~la~~l~~~~----p~--~~~~v~f-  117 (460)
T PRK06541         49 DRGK-RYLDGLAGLFVVQVGH--GRAELAEAAAKQAGTLAFFPLWSY-AHPPAIELAERLAALA----PG--DLNRVFF-  117 (460)
T ss_pred             CCCC-EEEECCccHHhccCCC--CCHHHHHHHHHHHhhCcCcccccc-CCHHHHHHHHHHHHhC----CC--CcCEEEE-
Confidence            3443 7888877642112222  2355565655554321 1  0112 1222233444444432    11  1257877 


Q ss_pred             eccchhHHHHHHHHHHHHhC-----C-CCEEEEcCCCCcchHHHHh-hCCC------------CeEEEecccCCC---CC
Q 017967          156 QGLSGTGSLRLAAALIERYF-----P-GAKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPKT---VG  213 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~-----~-gd~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~~~---~~  213 (363)
                       +.+|++|.+.+..+.....     + ..+|+...-+|.+...... ..|.            .+..+|..+...   ++
T Consensus       118 -~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  196 (460)
T PRK06541        118 -TTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELG  196 (460)
T ss_pred             -cCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccC
Confidence             9999999999876655441     2 2578887777755533221 1111            122233211000   11


Q ss_pred             CC--------HHHHHHHHHcCCCCcEEEEEcCC-CCCCCCCCC-HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCch
Q 017967          214 LD--------FEGMIADIKAAPGGSFILLHGCA-HNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (363)
Q Consensus       214 ~d--------~~~l~~~l~~~~~~~~~~~i~~p-~NPTG~~~s-~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~  283 (363)
                      -+        ++.+++.+.....+.+..++..| +++.|...+ .+-+++|.++|+++|+++|.||++.+|.-.+   ..
T Consensus       197 ~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G---~~  273 (460)
T PRK06541        197 DDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLG---EM  273 (460)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---hh
Confidence            12        35677777642223344444555 999999865 8889999999999999999999998884221   11


Q ss_pred             hHHHHHHhcCCeEEEEEcCccccccccc-cceEEEEeeCChh
Q 017967          284 SSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSD  324 (363)
Q Consensus       284 ~~~~~~~~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~  324 (363)
                      .....+ +-.++++   .|+|.++ .|+ ++|++  ++. ++
T Consensus       274 ~a~~~~-gv~PDiv---t~gK~l~-~G~~pigav--~~~-~~  307 (460)
T PRK06541        274 FGCERF-GYVPDII---TCAKGIT-SGYSPLGAM--IAS-DR  307 (460)
T ss_pred             hhhhhc-CCCCCEE---Eeccccc-CCccceeEE--EEc-HH
Confidence            122111 2223443   4899998 897 99999  765 55

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.03  E-value=7.5e-08  Score=94.44  Aligned_cols=158  Identities=11%  Similarity=0.073  Sum_probs=97.8

Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hh---------CCC---CeEEEecccCCCCC-CCHHHHHHH
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-ND---------ARV---PWSEYRYYDPKTVG-LDFEGMIAD  222 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~---------~G~---~~~~v~~~~~~~~~-~d~~~l~~~  222 (363)
                      +++|++|.+.+..+.+.+....+|+...-+|.+..... ..         .|.   .+..+|..+..... -|++.+++.
T Consensus       109 ~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~  188 (425)
T PRK09264        109 GPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKL  188 (425)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHH
Confidence            47999999999776655543467888888886654321 11         111   23344431110001 267788888


Q ss_pred             HHcCC---CCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEE
Q 017967          223 IKAAP---GGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (363)
Q Consensus       223 l~~~~---~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~  298 (363)
                      +.+..   +....+++-.-..-.|. .++.+.+++|.++|++||+++|+||++.+|...+   .......+ +-.+++  
T Consensus       189 l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG---~~~~~~~~-~v~PDi--  262 (425)
T PRK09264        189 LEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG---TFFSFERA-GITPDI--  262 (425)
T ss_pred             HHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc---HHHHHhhc-CCCCCE--
Confidence            86422   22344444333444565 5789999999999999999999999998875432   12222211 222343  


Q ss_pred             EEcCccccccccccceEEEEeeCChh
Q 017967          299 AQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       299 ~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                       -+|||.++..|+++|++  +++ ++
T Consensus       263 -~t~~K~l~~~G~pigav--~~~-~~  284 (425)
T PRK09264        263 -VTLSKSISGYGLPMALV--LIK-PE  284 (425)
T ss_pred             -EEeccccCCCccceEEE--EEc-hh
Confidence             36689999559999999  766 44

>PRK15029 arginine decarboxylase; Provisional

Probab=99.01  E-value=1.4e-08  Score=104.57  Aligned_cols=194  Identities=14%  Similarity=0.066  Sum_probs=125.6

Q ss_pred             Ccc-hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEE
Q 017967          125 IEG-LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (363)
Q Consensus       125 ~~G-~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (363)
                      ..| +.+..+..|+.+ +.      ..-.++  ++|+|.++..+  ++..+.+||+|+++.-++-.....+...|+++++
T Consensus       203 p~G~I~eAq~~aA~~f-gA------~~t~Fl--vNGST~gn~a~--i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvy  271 (755)
T PRK15029        203 HTGAFGESEKYAARVF-GA------DRSWSV--VVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVY  271 (755)
T ss_pred             CCcHHHHHHHHHHHHh-CC------CcEEEE--eCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEE
Confidence            444 455666666664 43      244555  89999997766  6777889999999999999999999999999999


Q ss_pred             EecccCCC----CCCC-----HHHHHHHHHcCCCCc-------EEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEE
Q 017967          204 YRYYDPKT----VGLD-----FEGMIADIKAAPGGS-------FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF  267 (363)
Q Consensus       204 v~~~~~~~----~~~d-----~~~l~~~l~~~~~~~-------~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~  267 (363)
                      ++-.- +.    .+++     ++.+++++++.|...       .++++++|+ =-|+++.   +++|+++|+++++.+++
T Consensus       272 l~P~~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT-Y~Gv~~d---i~~I~~~~h~~~~~llv  346 (755)
T PRK15029        272 MVPSR-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYN---AKEAQDLLEKTSDRLHF  346 (755)
T ss_pred             ecccc-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC-CcceeeC---HHHHHHHHHhcCCeEEE
Confidence            85321 22    3344     899999998765322       245544442 2388875   56677889999999999


Q ss_pred             ecCCCCC-cCCCCCCchhHHH-HHHh-cCCeEEEEEcCccccccccccceEEEEeeCCh--hHHHHHHHHHHhh
Q 017967          268 DVAYQGF-ASGSLDNDASSVR-LFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVCSSS--DLAARVKSQLKRL  336 (363)
Q Consensus       268 De~y~~~-~~~~~~~~~~~~~-~~~~-~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~--~~~~~~~~~l~~~  336 (363)
                      ||+|... .|.+.-+....+. .... .+..++++.|..|.+  +++.-|.+.-+-.+.  -..+++.+.+...
T Consensus       347 DEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LHv~~~~~~id~~r~~~~l~~~  418 (755)
T PRK15029        347 DEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMMH  418 (755)
T ss_pred             ECccccccccCccccccccccccccccCCCceEEEEchhhcc--cchhhhhhheeCCCccccCHHHHHHHHHHH
Confidence            9998654 3432111001110 0001 345679999999988  477777664443321  1234566655544

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=98.99  E-value=5.9e-08  Score=94.19  Aligned_cols=216  Identities=13%  Similarity=0.025  Sum_probs=127.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.-...-|+.  .|.+.+++.+.+.... ..+  .....+....+|+++....+    .+++.+  +++|++|
T Consensus        37 ~~lD~~sg~~~~~lGh~--~p~v~~a~~~q~~~~~-~~~--~~~~~~~~~~la~~l~~~~~----~~~v~f--~~SGseA  105 (395)
T PRK03715         37 RYLDFIQGWAVNCLGHC--NPGMVEALAAQAEKLI-NPS--PAFYNEPMAKLAGLLTQHSC----FDKVFF--ANSGAEA  105 (395)
T ss_pred             EEEECCcChhhccCCCC--CHHHHHHHHHHHHhcc-ccc--ccccCHHHHHHHHHHhhccC----CCEEEE--eCCcHHH
Confidence            78898865432223333  3566666655543211 111  12234566778888754321    257877  9999999


Q ss_pred             HHHHHHHHHHhC----CC-CEEEEcCCCCcchHH-HHhhCCCCeE---EEecccC--CCCCCCHHHHHHHHHcCCCCcEE
Q 017967          164 LRLAAALIERYF----PG-AKVLISSPTWGNHKN-IFNDARVPWS---EYRYYDP--KTVGLDFEGMIADIKAAPGGSFI  232 (363)
Q Consensus       164 l~l~~~l~~~~~----~g-d~Vlv~~P~y~~~~~-~~~~~G~~~~---~v~~~~~--~~~~~d~~~l~~~l~~~~~~~~~  232 (363)
                      .+.+..+...+.    +| .+|+..+.+|.+... .+...|....   ..|....  .....|++.+++.+.   +...+
T Consensus       106 ~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~aa  182 (395)
T PRK03715        106 NEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLIT---DKTVA  182 (395)
T ss_pred             HHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcC---CCceE
Confidence            999876655431    34 578888888866543 2333332211   1111000  001246888888875   23555


Q ss_pred             EEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccc
Q 017967          233 LLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (363)
Q Consensus       233 ~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~  311 (363)
                      +++...++..|... +.+.+++|.++|+++|+++|+||++.+|.-.+   ..+....+ .-.+++   .+|+|.+| .|+
T Consensus       183 vi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG---~~~a~~~~-gv~PDi---~t~gK~lg-~G~  254 (395)
T PRK03715        183 VMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG---TLFAYELS-GIEPDI---MTLGKGIG-GGV  254 (395)
T ss_pred             EEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc---chhhHhhc-CCCCce---eeehhhhh-CCc
Confidence            55554555556654 68889999999999999999999999874332   11122211 222333   47789998 688


Q ss_pred             cceEEEEeeCChh
Q 017967          312 RIGAMNVVCSSSD  324 (363)
Q Consensus       312 RvG~i~~v~~~~~  324 (363)
                      -+|.+  ++. ++
T Consensus       255 p~~av--~~~-~~  264 (395)
T PRK03715        255 PLAAL--LAK-AE  264 (395)
T ss_pred             ceEEE--EEc-cc
Confidence            89988  655 44

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=98.93  E-value=1.9e-07  Score=92.50  Aligned_cols=210  Identities=19%  Similarity=0.155  Sum_probs=125.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+||+..|.-...-|+  -.+.+.+++.+.++......+ +.    +....+|+.+..... .  .+++.+  +++|++|
T Consensus       100 ~yiD~~~g~g~~~lGh--~~p~v~~av~~ql~~~~~~~~-~~----~~~~~lAe~l~~~~p-~--~~~v~f--~~SGsEA  167 (474)
T PLN02482        100 EYIDYVGSWGPAIIGH--ADDEVLAALAETMKKGTSFGA-PC----LLENVLAEMVIDAVP-S--VEMVRF--VNSGTEA  167 (474)
T ss_pred             EEEEecccccccccCC--CCHHHHHHHHHHHhhCCCCCC-CC----HHHHHHHHHHHHhCC-C--CCEEEE--eCChHHH
Confidence            7888876642222222  245666666665543321211 22    233444555433221 1  368877  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-h--C-----------CCC------eEEEecccCCCCCCCHHHHHHHH
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFN-D--A-----------RVP------WSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~--~-----------G~~------~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      .+.+.++.+.+...++|+...-+|.++...+. .  .           |+.      +..+|.       -|++.+++.+
T Consensus       168 ~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------nd~~~l~~~l  240 (474)
T PLN02482        168 CMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-------NDLEAVKKLF  240 (474)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-------CChHHHHHHH
Confidence            99997765555444678888888877543211 1  0           110      111111       1688899888


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCCCC-HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcC
Q 017967          224 KAAPGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~~s-~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~  302 (363)
                      ...++....+++-.-..-.|.+.+ .+-+++|.++|+++|+++|+||+..+|..+.    ......+ .-.+++   ..|
T Consensus       241 ~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~----~ga~~~~-gv~PDi---~t~  312 (474)
T PLN02482        241 EANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAY----GGAQEYF-GITPDL---TTL  312 (474)
T ss_pred             HhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCc----chHhHHh-CCCCCE---EEe
Confidence            754444555554444444576554 6789999999999999999999988874431    1122112 222343   477


Q ss_pred             ccccccccccceEEEEeeCChh
Q 017967          303 SKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       303 SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      +|.+| .|+-+|.+  ++. ++
T Consensus       313 gK~lg-gG~Pigav--~g~-~e  330 (474)
T PLN02482        313 GKVIG-GGLPVGAY--GGR-RE  330 (474)
T ss_pred             cchhh-CCCceEEE--EEc-HH
Confidence            99998 89999999  554 66

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=98.93  E-value=1.3e-07  Score=92.93  Aligned_cols=210  Identities=13%  Similarity=0.083  Sum_probs=140.6

Q ss_pred             CccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hC--
Q 017967           99 QPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YF--  175 (363)
Q Consensus        99 ~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~--  175 (363)
                      ++.+.+...+.+...+.... .......+..++.+.+..++....+.+   +......|.|||+|..++....+. ..  
T Consensus        71 ~~~~~~~a~~~~~~~~~~nl-~d~~~~p~a~~~E~~~v~~l~~l~~~~---~~~~G~~t~GgTean~lal~aar~~~~~~  146 (460)
T COG0076          71 PTRVPPVAAELLVSALNKNL-GDPDESPAAAELEERVVNMLSDLLGAP---EEASGTFTSGGTEANLLALLAARERWRKR  146 (460)
T ss_pred             CCCCHHHHHHHHHHHHhhcC-CCcccChhHHHHHHHHHHHHHHHhCCC---CCCceEEEcChHHHHHHHHHHHHHHHHHH
Confidence            35566677776666554322 111122366778888888876665554   233233489999998876433222 11  


Q ss_pred             C---CC------EEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCC
Q 017967          176 P---GA------KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP  246 (363)
Q Consensus       176 ~---gd------~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~  246 (363)
                      .   +.      .|+++.-.+..+...+...|+....+++... +..+|++++++++.+..... +++-.-+.-|||.+ 
T Consensus       147 ~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g-~vV~~aGtT~~G~i-  223 (460)
T COG0076         147 ALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGG-VVVGTAGTTDTGSI-  223 (460)
T ss_pred             hhhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCc-eEEEEecCCCCCcc-
Confidence            1   11      5888988999999999999999999998543 78999999999998633221 24445678889965 


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEE-EEcCccccccccccceEEEEeeCChh
Q 017967          247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV-AQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       247 s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~-~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                        +++++|.++|+++++++.+|.+|.++...-.+++..    +...-+.+.. .-++.|.+ +.=.-.||+  +..|++
T Consensus       224 --Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~----~~f~l~~vdSIt~d~HK~g-~aP~~~G~i--l~rd~e  293 (460)
T COG0076         224 --DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR----WDFGLEGVDSITVDGHKYG-LAPIGCGVV--LFRDEE  293 (460)
T ss_pred             --CCHHHHHHHHHHcCCcEEEEccccceeecccCccch----hhcCCCCceEEEECccccc-CCCCCceEE--EEECHH
Confidence              788889999999999999999999886421111111    1122234433 45789965 466778999  888775

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=98.91  E-value=4.2e-08  Score=93.97  Aligned_cols=190  Identities=12%  Similarity=-0.028  Sum_probs=114.3

Q ss_pred             CCccccHHHHHHHHHHHccC---CCCCCCCC-------cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccc-hhHHHHH
Q 017967           98 LQPYVLDVVKKAENLMLERG---ENKEYLPI-------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS-GTGSLRL  166 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~---~~~~Y~~~-------~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g-gt~al~l  166 (363)
                      ++..+++.|.+++.+.....   ....|...       .-..+.|+.+++++...     ++++|++  |.| +|++++.
T Consensus         6 Gp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~-----~~~~vvf--~~gs~T~a~~~   78 (355)
T cd00611           6 GPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIP-----DNYKVLF--LQGGATGQFAA   78 (355)
T ss_pred             CCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-----CCceEEE--EcCCchHHHHH
Confidence            55667888888887765210   00111111       23567888899887532     2567877  877 9999999


Q ss_pred             HHHHHHHhC---CCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCC-C-HHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          167 AAALIERYF---PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL-D-FEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       167 ~~~l~~~~~---~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~-d-~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +  +..++.   +||.|++ .|....+...+++.|++++.++.++  ++.. + ++..+..++   ++++++.+++..|.
T Consensus        79 ~--~~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~--~g~~~~~~~~~~~~~~---~~~~lV~~~h~~t~  150 (355)
T cd00611          79 V--PLNLLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKE--EGKYTKIPDVETWDLA---PDAAYVHYCSNETI  150 (355)
T ss_pred             H--HHhcCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEeccc--ccCCCCCCCHhhcCCC---CCCCEEEEeCCccc
Confidence            9  444455   4444443 3333333447788999999998732  2122 3 222222233   34667788899999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||..++        ++++.+|+++++|.+ +.+...+.     .+..+     + +.+.|--|.+|.+|  +|.+  +..
T Consensus       151 tG~~~~--------~i~~~~g~~~~VDa~-qs~g~~~i-----dv~~~-----~-~~~ss~~K~lGP~G--~g~l--~~~  206 (355)
T cd00611         151 HGVEFD--------EVPDTGGVPLVADMS-SNILSRPI-----DVSKF-----G-VIYAGAQKNLGPAG--VTVV--IVR  206 (355)
T ss_pred             ccEEcc--------eecccCCCeEEEEcc-ccccCCCC-----CHHHh-----C-EEEeecccccCCCc--eEEE--EEC
Confidence            999743        235569999999999 44433211     12111     2 35566799999777  5777  554


Q ss_pred             ChhHHH
Q 017967          322 SSDLAA  327 (363)
Q Consensus       322 ~~~~~~  327 (363)
                       ++.++
T Consensus       207 -~~~~~  211 (355)
T cd00611         207 -KDLLG  211 (355)
T ss_pred             -HHHHh
Confidence             55433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PLN02263 serine decarboxylase

Probab=98.91  E-value=3.3e-08  Score=96.51  Aligned_cols=182  Identities=13%  Similarity=0.039  Sum_probs=124.8

Q ss_pred             chHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEec
Q 017967          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY  206 (363)
Q Consensus       127 G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~  206 (363)
                      +..++.+.+.+|+.+..+.+  +++.....|.|||+|.-++....+...+...|++++-++..+..+++.+|++++.+|+
T Consensus       130 ~s~~~E~~Vi~wla~L~g~p--~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~  207 (470)
T PLN02263        130 HSRQFEVGVLDWFARLWEIE--KNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDT  207 (470)
T ss_pred             hHHHHHHHHHHHHHHHhCCC--CCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEecc
Confidence            56788888888877666543  2221112389999997776333322335557888999999999999999999999998


Q ss_pred             ccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCC-----eEEEecCCCCCcCCCCCC
Q 017967          207 YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNH-----IPFFDVAYQGFASGSLDN  281 (363)
Q Consensus       207 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~-----~ii~De~y~~~~~~~~~~  281 (363)
                      +  +++.+|++.|++++.++..++.+++.+-+.-+||.+   +++++|.++|+++|+     ++-+|.+|.++.....+ 
T Consensus       208 d--~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~-  281 (470)
T PLN02263        208 L--VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVK-  281 (470)
T ss_pred             C--CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcc-
Confidence            4  468999999999998654446677667788899986   667778888999986     99999999887542110 


Q ss_pred             chhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       282 ~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      ..+.+ .+.. .-+. +.-+..|.++ .-+-.|.+  +..+
T Consensus       282 ~~~~~-df~~-~vDS-IsvD~HK~l~-~P~~cgvl--l~R~  316 (470)
T PLN02263        282 RAPKV-TFKK-PIGS-VSVSGHKFVG-CPMPCGVQ--ITRM  316 (470)
T ss_pred             ccccc-CCCc-CccE-EEECCccccC-CCcCEEEE--EEeh
Confidence            11011 1111 1111 2456789776 55667777  5553

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=98.90  E-value=1.2e-07  Score=93.78  Aligned_cols=212  Identities=14%  Similarity=0.062  Sum_probs=120.5

Q ss_pred             hhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC---Ccc------hHH-HHHHHHHHH
Q 017967           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEG------LAA-FNKVTAELL  139 (363)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~G------~~~-lr~aia~~l  139 (363)
                      +.++....+..+ .+.|+|-..++       .+.+.+++++...+......+++.   ..|      +.+ .|+.+++++
T Consensus        22 ~~~~~~~~~~~~-~~~l~l~~sen-------~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf   93 (452)
T PTZ00094         22 LYELIEKEKERQ-IEGLELIASEN-------FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAF   93 (452)
T ss_pred             HHHHHHHHHHHH-HcCeeEecccc-------cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHh
Confidence            444444332222 36899987764       245677777655542211011111   112      221 455777776


Q ss_pred             hcCCCCcccCCcEEE-EeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh----------CCCCeEEEeccc
Q 017967          140 FGADNSVLKEQRVAT-VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND----------ARVPWSEYRYYD  208 (363)
Q Consensus       140 ~~~~~~~~~~~~i~~-~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~----------~G~~~~~v~~~~  208 (363)
                      ...      ++++.+ +++.+|+.+..++  +..++.+||+|++....+..+......          .++++..++.+ 
T Consensus        94 ~a~------~~~~~~~~~~~sgt~an~~v--~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~-  164 (452)
T PTZ00094         94 GLD------PEEWGVNVQPYSGSPANFAV--YTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN-  164 (452)
T ss_pred             CCC------cccceeecCCCchHHHHHHH--HHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC-
Confidence            443      345433 2347889898776  455577999999987776655433211          11233444443 


Q ss_pred             CCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcC-CCCCCchhHHH
Q 017967          209 PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS-GSLDNDASSVR  287 (363)
Q Consensus       209 ~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~  287 (363)
                       .++.+|++.+++.+++.  ++.++++.  ++.+|...+.+++   .++|+++|+++++|++..--.. .+..  ..+  
T Consensus       165 -~~g~id~~~L~~~l~~~--~~~lvi~~--~s~~g~~~di~~I---~~i~~~~ga~l~vDaaq~~G~i~~~~~--~~~--  232 (452)
T PTZ00094        165 -EKGLIDYDKLEELAKAF--RPKLIIAG--ASAYPRDIDYKRF---REICDSVGAYLMADIAHTSGLVAAGVL--PSP--  232 (452)
T ss_pred             -CCCCcCHHHHHHHHHHh--CCCEEEEe--CCCCCCccCHHHH---HHHHHHcCCEEEEeccchhccccCCCC--CCC--
Confidence             34789999999999642  23344433  3458988776655   5569999999999999432211 1100  001  


Q ss_pred             HHHhcCCeEEEEEcCccccccccccceEE
Q 017967          288 LFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       288 ~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                        ..  .-.+++.|..|.++  |-+-|++
T Consensus       233 --~~--~~D~l~~S~hK~l~--GP~Gg~l  255 (452)
T PTZ00094        233 --FP--YADVVTTTTHKSLR--GPRSGLI  255 (452)
T ss_pred             --CC--CCcEEEcCCccCCC--CCCceEE
Confidence              01  23477999999774  3444777

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.90  E-value=1.3e-07  Score=100.10  Aligned_cols=162  Identities=11%  Similarity=0.060  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHhcCCCCcccCCcEEEEeccchh----HHHHHHHHHHHHhC-CCC----EEEEcCCCCcchHHHHhhCCC
Q 017967          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGT----GSLRLAAALIERYF-PGA----KVLISSPTWGNHKNIFNDARV  199 (363)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt----~al~l~~~l~~~~~-~gd----~Vlv~~P~y~~~~~~~~~~G~  199 (363)
                      .++|+.+++++ +   .    ++|.+  +.+++    .++.++  +..... +||    .|+++...+......+...|+
T Consensus       571 ~~~r~~la~i~-g---~----~~v~f--~pnaga~ge~a~~~v--i~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~  638 (993)
T PLN02414        571 EDLGDLLCEIT-G---F----DSFSL--QPNAGAAGEYAGLMV--IRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGM  638 (993)
T ss_pred             HHHHHHHHHHh-C---C----CeEEE--cCCCcHHHHHHHHHH--HHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCC
Confidence            45667777764 2   1    78877  77777    676666  334454 488    899999999888888888999


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++++  .++.+|+++|++.++++.++++++++++|+|-+|...+   +++|.++|+++|.++++|.+..--... .
T Consensus       639 ~vv~v~~d--~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a~~~-l  712 (993)
T PLN02414        639 KIVVVGTD--AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANMNAQVG-L  712 (993)
T ss_pred             EEEEeccC--CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCHHhccC-c
Confidence            99999984  46789999999999854445788888999999998754   667777899999999999995221101 0


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccc----cccccceEE
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLG----LYAERIGAM  316 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~----l~G~RvG~i  316 (363)
                      .    .    .....-.++..|..|.|+    ..|-.+|.+
T Consensus       713 ~----~----p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l  745 (993)
T PLN02414        713 T----S----PGFIGADVCHLNLHKTFCIPHGGGGPGMGPI  745 (993)
T ss_pred             C----C----ccccCCCEEEecCCccCCcCcccCCCCeeeE
Confidence            0    0    011133466777888665    234457888

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=98.88  E-value=3e-07  Score=90.50  Aligned_cols=256  Identities=13%  Similarity=0.064  Sum_probs=133.4

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      .+++ .++|+..|.-...-|+  -.+.+.+++.+.+.... + +....-..+....+|+.+....... ..+++.+  +.
T Consensus        51 ~dG~-~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~~~-~-~~~~~~~~~~~~~lAe~L~~~~p~~-~~~~v~f--~~  122 (441)
T PRK05769         51 VDGN-VYLDFNAGIAVTNVGH--AHPKVVKAVKEQAEKFL-H-YSLTDFYYEPAVELAERLVEIAPGG-FEKKVFF--TN  122 (441)
T ss_pred             CCCC-EEEECCCchhhcccCC--CCHHHHHHHHHHHHhcc-C-ccCcccCCHHHHHHHHHHHHhCCCC-CCCEEEE--CC
Confidence            3443 7888877643222222  23456556555543211 1 1000001123344444443321100 1257877  99


Q ss_pred             chhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCC-------------CeEEEecccCCC--CC-C-------
Q 017967          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARV-------------PWSEYRYYDPKT--VG-L-------  214 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~-------------~~~~v~~~~~~~--~~-~-------  214 (363)
                      +|++|.+.+..+........+|+...-+|.+..... ...|.             .+..++..+...  ++ -       
T Consensus       123 SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (441)
T PRK05769        123 SGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGN  202 (441)
T ss_pred             chHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHH
Confidence            999999999766555544467888888886664322 11111             122333210000  01 0       


Q ss_pred             -CHHHHHH-HHHc--CCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH
Q 017967          215 -DFEGMIA-DIKA--APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (363)
Q Consensus       215 -d~~~l~~-~l~~--~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  289 (363)
                       +++.+++ .++.  .++....+++-.-+.-.|.. .+.+.+++|.++|+++|+++|.||++.+|...+   .......+
T Consensus       203 ~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G---~~~a~~~~  279 (441)
T PRK05769        203 AVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTG---KMFAIEHF  279 (441)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---ceehhhcc
Confidence             1234555 2221  22334444443334445664 457889999999999999999999999875432   11122222


Q ss_pred             HhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       290 ~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                       .-.++++   .|||.++ .|+++|++  ++. ++    +...+......++ +.+++++.++...|+.
T Consensus       280 -gv~pDiv---t~~K~l~-~G~p~gav--~~~-~~----i~~~~~~~~~~T~-~g~p~~~aaa~a~L~~  335 (441)
T PRK05769        280 -GVEPDII---TLAKAIA-GGLPLGAV--IGR-AE----LMFLPPGSHANTF-GGNPVAAAAALATLEE  335 (441)
T ss_pred             -CCCCCEE---EEccccc-CCcccEEE--EEe-hh----hhhcCCCCCCCCC-CcCHHHHHHHHHHHHH
Confidence             2223444   4799999 89999998  665 44    3332222222333 3467777776655543

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=98.86  E-value=3.5e-07  Score=89.85  Aligned_cols=213  Identities=16%  Similarity=0.070  Sum_probs=120.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|.-...-|+  -.|.|.+++.+.+.. .....|.......+|.+.+++..-.      ..+++.+  +++|++
T Consensus        76 ~ylD~~~g~~~~~lGh--~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~------~~~~v~f--~~SGsE  145 (442)
T TIGR03372        76 EFIDCLGGFGIFNVGH--RNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPG------KLKYSFF--CNSGTE  145 (442)
T ss_pred             EEEECCccHHhhhcCC--CCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCC------CcCEEEE--eCCchH
Confidence            6888866621111122  234555555544432 1112233333334455555544211      1256767  999999


Q ss_pred             HHHHHHHHHHHhC--CC-CEEEEcCCCCcchHHHHh-hCCC------------CeEEEecccCCCCCCCHHHHHHHHHc-
Q 017967          163 SLRLAAALIERYF--PG-AKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPKTVGLDFEGMIADIKA-  225 (363)
Q Consensus       163 al~l~~~l~~~~~--~g-d~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~~~~~~d~~~l~~~l~~-  225 (363)
                      |.+.+..+.+...  .| .+|+...-+|.+...... ..|-            .+..+|.       .|.+.+++.+.. 
T Consensus       146 A~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-------~d~~~~~~~l~~~  218 (442)
T TIGR03372       146 SVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-------GDIEAMLKALNEC  218 (442)
T ss_pred             HHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-------CCHHHHHHHHHHH
Confidence            9999977665553  24 578888888866543222 1111            1122222       256777776642 


Q ss_pred             --CCCCcEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcC
Q 017967          226 --APGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (363)
Q Consensus       226 --~~~~~~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~  302 (363)
                        .+.+...+++-.-+.--|... +++-++++.++|+++|+++|.||+..+|.-.+   ..+....+ .-.++++   .|
T Consensus       219 ~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~~-gv~PDiv---t~  291 (442)
T TIGR03372       219 KKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTG---KMFACEHE-GVQPDIL---CL  291 (442)
T ss_pred             hcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccc---cchhhhhc-CCCCCee---ee
Confidence              233344555444444456654 57788999999999999999999988774322   12232222 2223443   38


Q ss_pred             cccccccc-ccceEEEEeeCChh
Q 017967          303 SKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       303 SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                      +|.+| .| +-+|.+  ++. ++
T Consensus       292 gK~lg-~G~~Pigav--v~~-~~  310 (442)
T TIGR03372       292 AKALG-GGVMPIGAT--IAT-EA  310 (442)
T ss_pred             hhhhc-CCcccceEE--Eec-HH
Confidence            99998 78 689998  665 55

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.85  E-value=6.7e-07  Score=87.78  Aligned_cols=217  Identities=17%  Similarity=0.087  Sum_probs=124.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+||+..|.-...-|+  -.+.+.+++.+.+.......+ +.....+|-+.+++.+    .   ..+++.+  +.+|++|
T Consensus        54 ~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~~-~~~~~~~la~~l~~~~----p---~~~~v~f--~~sGseA  121 (428)
T PRK12389         54 KYIDYLAAYGPIITGH--AHPHITKAITEAAENGVLYGT-PTELEIEFAKMLKEAI----P---SLEKVRF--VNSGTEA  121 (428)
T ss_pred             EEEEccccccccccCC--CCHHHHHHHHHHHHhCCccCC-CCHHHHHHHHHHHHhC----C---CCcEEEE--eCCHHHH
Confidence            7888866642222222  235566666555543221222 2223334444444432    1   1357877  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhCCCCeE--------EEec-ccCCC---CCCCHHHHHHHHHcCCCCc
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDARVPWS--------EYRY-YDPKT---VGLDFEGMIADIKAAPGGS  230 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~~G~~~~--------~v~~-~~~~~---~~~d~~~l~~~l~~~~~~~  230 (363)
                      .+.+..+.+.+....+|+...-+|.+....+ ...|....        .++. ..++.   ...|++.+++.+.+..+..
T Consensus       122 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v  201 (428)
T PRK12389        122 VMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEV  201 (428)
T ss_pred             HHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcE
Confidence            9999776555544467888888887754322 22221110        0000 00000   0126889988887544444


Q ss_pred             EEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          231 FILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       231 ~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ..+++-.-+.-.|... +.+-+++|.++|+++|+++|.||+..+|....    . .......-.+++   -+|+|.+| .
T Consensus       202 aavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~----~-~a~~~~gv~PDi---vt~gK~lg-g  272 (428)
T PRK12389        202 AAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMY----G-GAQDLLGVEPDL---TALGKIIG-G  272 (428)
T ss_pred             EEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCc----c-hhhHHhCCCCCe---eeechhhc-C
Confidence            4555444455557554 67789999999999999999999998884321    1 111111222343   37799998 7


Q ss_pred             cccceEEEEeeCChh
Q 017967          310 AERIGAMNVVCSSSD  324 (363)
Q Consensus       310 G~RvG~i~~v~~~~~  324 (363)
                      |+-+|.+  ++. ++
T Consensus       273 G~Pi~av--~~~-~~  284 (428)
T PRK12389        273 GLPIGAY--GGR-KD  284 (428)
T ss_pred             CCceeEE--eEH-HH
Confidence            8999998  554 66

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.84  E-value=6.1e-07  Score=87.98  Aligned_cols=222  Identities=14%  Similarity=0.068  Sum_probs=121.8

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      .+++ .+||+..|.-...-|+  -.+.+.+++.+.++......+ +.....+|-+.+.+.+    .  ...+++.+  +.
T Consensus        50 ~dG~-~yiD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~~-~~~~~~~la~~L~~~~----~--~~~~~v~f--~~  117 (433)
T PRK00615         50 SLGK-TFIDFCGSWGSLIHGH--SHPKICDAIQQGAERGTSYGL-TSEQEILFAEELFSYL----G--LEDHKIRF--VS  117 (433)
T ss_pred             CCCC-EEEEcccchhccccCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhC----C--CCcCEEEE--eC
Confidence            3443 7888876642221222  245566665555533221222 2223344455554442    1  11257877  99


Q ss_pred             chhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCC---e-EEE--ecccCCC---CCCCHHHHHHHHHc
Q 017967          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVP---W-SEY--RYYDPKT---VGLDFEGMIADIKA  225 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~---~-~~v--~~~~~~~---~~~d~~~l~~~l~~  225 (363)
                      +|++|.+.+..+.+.+....+|+...-+|.++...    ....+-.   . ...  +......   ..-|++.+++.+..
T Consensus       118 SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  197 (433)
T PRK00615        118 SGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNS  197 (433)
T ss_pred             chHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHh
Confidence            99999999976655443336788888788775311    1111100   0 000  0000000   01267889888875


Q ss_pred             CCCCcEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcc
Q 017967          226 APGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (363)
Q Consensus       226 ~~~~~~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  304 (363)
                      ..++...+++-....-.|... +.+-+++|.++|++||+++|.||+..+|..+.    .... ....-.++++   .|+|
T Consensus       198 ~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~----~ga~-~~~gv~PDi~---~~gK  269 (433)
T PRK00615        198 LGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQ----GGAA-AIYHVKPDIT---VYGK  269 (433)
T ss_pred             cCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccH----hHHH-HhcCCCCCeE---EEcc
Confidence            433344444433333346544 46778899999999999999999998884331    1122 1112223443   3899


Q ss_pred             ccccccccceEEEEeeCChh
Q 017967          305 NLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       305 ~~~l~G~RvG~i~~v~~~~~  324 (363)
                      .+| .|+-+|++  ++. ++
T Consensus       270 ~lg-gG~p~~av--~~~-~~  285 (433)
T PRK00615        270 ILG-GGLPAAAV--VAH-KS  285 (433)
T ss_pred             ccc-CCcceeee--eec-HH
Confidence            998 67878888  554 66

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=98.84  E-value=2.5e-07  Score=90.77  Aligned_cols=229  Identities=16%  Similarity=0.096  Sum_probs=127.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCC-----C-CCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK-----E-YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-----~-Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      +.|+|-..++       ++.+.+++++...+......     + |.......++.....+.....++..+  -+   +|.
T Consensus        50 ~~l~LiasEN-------~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~--an---vqp  117 (493)
T PRK13580         50 SSLKLIASEN-------YSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEH--AY---VQP  117 (493)
T ss_pred             cCceEecccc-------cCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCc--cc---ccC
Confidence            6788876654       34677777765544222112     2 22233334443333333322222221  23   456


Q ss_pred             cchhHHHHHHHHHHHHhCC-------------------------------CCEEEEcCCCCcchHHH-----HhhCCCCe
Q 017967          158 LSGTGSLRLAAALIERYFP-------------------------------GAKVLISSPTWGNHKNI-----FNDARVPW  201 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~-------------------------------gd~Vlv~~P~y~~~~~~-----~~~~G~~~  201 (363)
                      .+|+.|...+  +..++.|                               ||+|+..++..+++...     +.....+.
T Consensus       118 ~Sg~~An~~v--~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~  195 (493)
T PRK13580        118 HSGADANLVA--FWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQ  195 (493)
T ss_pred             CCcHHHHHHH--HHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeee
Confidence            7888887666  5556655                               79999998777655322     11122456


Q ss_pred             EEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCC
Q 017967          202 SEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (363)
Q Consensus       202 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~  281 (363)
                      +.++++ .+++.+|.+.+++.+++  .++++++ +..+|=++ ..+   +++|.++|+++|.++++|++..--..+..  
T Consensus       196 ~~y~vd-~~~g~iD~d~l~~~~~~--~~plvii-~g~S~~~~-~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~--  265 (493)
T PRK13580        196 RSYGVD-PDTGLLDYDEIAALARE--FKPLILV-AGYSAYPR-RVN---FAKLREIADEVGAVLMVDMAHFAGLVAGK--  265 (493)
T ss_pred             EecccC-cccCccCHHHHHHHHhh--cCCEEEE-eCccccCC-CcC---HHHHHHHHHHcCCEEEEECchhhceeccc--
Confidence            667774 34678999999999985  3344444 55555444 444   66667779999999999999543222210  


Q ss_pred             chhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchH
Q 017967          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPM  347 (363)
Q Consensus       282 ~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~  347 (363)
                       ... ..+-....-.++++|++|.+.  |-+.|++  .+. ++    +++.+.......++++..+
T Consensus       266 -~~~-~~~~~~~~~D~vtgT~hKaL~--GP~GG~I--~~~-~~----l~~~L~~a~P~i~gg~l~p  320 (493)
T PRK13580        266 -VFT-GDEDPVPHADIVTTTTHKTLR--GPRGGLV--LAK-KE----YADAVDKGCPLVLGGPLPH  320 (493)
T ss_pred             -cch-hhcCCCCCCcEEEeCChhhcc--CCCeEEE--Eec-HH----HHHHHhhCCCcccCCCccH
Confidence             000 000001123478999999883  4455777  554 66    4555543333344444444

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=98.83  E-value=1.4e-07  Score=85.28  Aligned_cols=150  Identities=14%  Similarity=0.184  Sum_probs=104.3

Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCC-Cc-chHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEE
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPT-WG-NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL  234 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~-y~-~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~  234 (363)
                      ...|+.+.+.+  +.+++.|||.|++..-+ |. .+....+++|++|..++.  +.+....++.+.+.+..  .+.++++
T Consensus        74 sgsGh~g~E~a--l~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~--~~G~~~~le~i~~~lsq--h~p~~vf  147 (385)
T KOG2862|consen   74 SGSGHSGWEAA--LVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEA--DIGQAVPLEEITEKLSQ--HKPKAVF  147 (385)
T ss_pred             ecCCcchHHHH--HHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEec--CcccCccHHHHHHHHHh--cCCceEE
Confidence            67789998888  77888899999887764 43 235567899999999976  45778899999999986  4566777


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc-ccccc
Q 017967          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERI  313 (363)
Q Consensus       235 i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l-~G~Rv  313 (363)
                      ++....-||+..+.  ++.+-++|++|+.++++|.+-+ +...+..-        -+-+.++.+.+| =|.+|. +|+  
T Consensus       148 v~hgdsSTgV~q~~--~~~~g~lc~k~~~lllVD~VaS-lggt~F~m--------DewgVDvaytgS-QKaL~aP~GL--  213 (385)
T KOG2862|consen  148 VTHGDSSTGVLQDL--LAISGELCHKHEALLLVDTVAS-LGGTEFEM--------DEWGVDVAYTGS-QKALGAPAGL--  213 (385)
T ss_pred             EEecCccccccchH--HHHHHHHhhcCCeEEEEechhh-cCCcccee--------hhhcccEEEecc-hhhcCCCCCc--
Confidence            78888889998762  3334456999999999999943 22211111        123346666666 688876 454  


Q ss_pred             eEEEEeeCChhHHHHH
Q 017967          314 GAMNVVCSSSDLAARV  329 (363)
Q Consensus       314 G~i~~v~~~~~~~~~~  329 (363)
                      +-+   +.++...+++
T Consensus       214 sii---sfS~ka~~~~  226 (385)
T KOG2862|consen  214 SII---SFSDKALEAI  226 (385)
T ss_pred             cee---ecCHHHHHHH
Confidence            334   5556533333

>PLN02724 Molybdenum cofactor sulfurase

Probab=98.81  E-value=2.3e-07  Score=97.92  Aligned_cols=171  Identities=11%  Similarity=0.092  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCC--cEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeE
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQ--RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWS  202 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~--~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~  202 (363)
                      ..+.|+.+|+++...      ++  .|++  |.|+|+|+++++..+. +.+||.|++..-.|.....   .++..|+++.
T Consensus        80 ~e~aR~~ia~~lga~------~~~~~VvF--tsnaT~alnlva~~l~-~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~  150 (805)
T PLN02724         80 IESARQQVLEYFNAP------PSDYACVF--TSGATAALKLVGETFP-WSSESHFCYTLENHNSVLGIREYALEKGAAAI  150 (805)
T ss_pred             HHHHHHHHHHHhCCC------ccceEEEE--eCChHHHHHHHHHHCC-CCCCCeEEEeeccccchHHHHHHHHHcCCeEE
Confidence            568889999997543      33  4666  9999999999954432 5689999998766655443   3456799999


Q ss_pred             EEecccC------CCCCCCH--HHHHHHHH----c---CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhc-----C
Q 017967          203 EYRYYDP------KTVGLDF--EGMIADIK----A---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK-----N  262 (363)
Q Consensus       203 ~v~~~~~------~~~~~d~--~~l~~~l~----~---~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~-----~  262 (363)
                      .++++.+      ....+++  +.+++.++    .   ..++++++.++..+|-||..++.+++.++.+.+.++     +
T Consensus       151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~  230 (805)
T PLN02724        151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR  230 (805)
T ss_pred             eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence            9887411      1122332  55665532    0   013456888899999999999998655444333222     3


Q ss_pred             CeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeC
Q 017967          263 HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCS  321 (363)
Q Consensus       263 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~  321 (363)
                      +++++|.+ +.......     .+    ...+-.+++.|+-|.+| -.|  +|++  +..
T Consensus       231 ~~v~vDaa-Q~~g~~pi-----Dv----~~~~~Dfl~~S~HK~~GgP~G--~G~L--~vr  276 (805)
T PLN02724        231 WMVLLDAA-KGCGTSPP-----DL----SRYPADFVVVSFYKIFGYPTG--LGAL--LVR  276 (805)
T ss_pred             eEEEeehh-hhcCCCCC-----Ch----hhcCCCEEEEecceeccCCCC--ceEE--EEe
Confidence            67999988 43332211     11    12245688899999988 345  6888  555

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.79  E-value=2.1e-07  Score=83.62  Aligned_cols=169  Identities=19%  Similarity=0.216  Sum_probs=119.9

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEE-EcCCCCcchHHHH--------
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL-ISSPTWGNHKNIF--------  194 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vl-v~~P~y~~~~~~~--------  194 (363)
                      +.-|-..|.+-.|+.+...       .-++-.|..+||+|+..+  ++..++|||..+ +..--|....+++        
T Consensus        63 dD~GRdtLe~vyA~vf~aE-------~a~VRpq~isGTHAI~~a--Lfg~LRpgDell~i~G~PYDTLeevIG~rg~~~g  133 (416)
T COG4100          63 DDLGRDTLERVYAQVFGAE-------AALVRPQIISGTHAIACA--LFGILRPGDELLYITGSPYDTLEEVIGLRGEGQG  133 (416)
T ss_pred             cccchhHHHHHHHHHhccc-------cceeeeeeecchhHHHHH--HHhccCCCCeEEEecCCcchhHHHHhccCCCCcc
Confidence            4556677777777776443       444556679999998777  888899999854 4445566666544        


Q ss_pred             --hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhc--CCeEEEecC
Q 017967          195 --NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK--NHIPFFDVA  270 (363)
Q Consensus       195 --~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~--~~~ii~De~  270 (363)
                        +.+|+.+..+|+.  .++.+|.+.+++.+++  +.+++.+.-+...-.--.++.+|+++++++.++-  |+++++|++
T Consensus       134 SL~dfgi~Y~~v~Lt--~~gkiD~~~v~~~i~~--~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNC  209 (416)
T COG4100         134 SLKDFGIKYKAVPLT--ADGKIDIQAVKTAISD--RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNC  209 (416)
T ss_pred             cHHHhCcceeecccc--cCCcccHHHHHHhcCc--cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEecc
Confidence              5788899999884  4678999999999983  3344444444555445568899999999999974  699999999


Q ss_pred             CCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccccc--ceEE
Q 017967          271 YQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER--IGAM  316 (363)
Q Consensus       271 y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~R--vG~i  316 (363)
                      |.+|...- ++...         .-.+..+|+-|+-| .|+-  -||+
T Consensus       210 YGEFvE~~-EPt~v---------GaDliAGSLIKNpG-GgiaktGGYi  246 (416)
T COG4100         210 YGEFVEEK-EPTHV---------GADLIAGSLIKNPG-GGIAKTGGYI  246 (416)
T ss_pred             chhhhhcc-Ccccc---------chhhhccceeeCCC-Cceeecccee
Confidence            99998652 21111         22366899999887 4442  2666

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=98.76  E-value=4.3e-07  Score=80.61  Aligned_cols=176  Identities=16%  Similarity=0.047  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecc
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY  207 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~  207 (363)
                      +..|.+.+++|+..        +.+-+  |.|+.++-..+  +-.++.+||.|++....+....-+++++|.++..+|-.
T Consensus        63 I~~F~~dlaeFlg~--------D~~R~--t~GARe~Kfav--Mhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~t  130 (382)
T COG1103          63 IKDFLEDLAEFLGM--------DEVRV--TAGAREAKFAV--MHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNT  130 (382)
T ss_pred             HHHHHHHHHHHhCC--------ceeee--cccchhhHHHH--HHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCC
Confidence            45788889999743        34444  99999998877  66778899999999987666666789999999999965


Q ss_pred             cCCCCCCCHHHHHHHHHc----CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCch
Q 017967          208 DPKTVGLDFEGMIADIKA----APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (363)
Q Consensus       208 ~~~~~~~d~~~l~~~l~~----~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~  283 (363)
                      ...++.+++|...+.+.+    ..+.+++.+++++   .|..=+..+-++++++|+++++.++...+|.--.-.      
T Consensus       131 g~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~---Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmp------  201 (382)
T COG1103         131 GYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHV---DGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMP------  201 (382)
T ss_pred             CCCceEecHHHHHHHHHHHHhccCCCceEEEEecc---CCCcCCchhhHHHHHHHHHcCCceEeecceeecccc------
Confidence            566789999988877765    2133556666554   455556778899999999999999999998643211      


Q ss_pred             hHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHH
Q 017967          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQ  332 (363)
Q Consensus       284 ~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~  332 (363)
                      .+.+    .-...++++|-.|++.. .--+|.+   +-.++..+.+.+.
T Consensus       202 vs~k----e~g~DFiVgSGHKsmAA-s~PiGvl---~~~eE~ae~V~r~  242 (382)
T COG1103         202 VSGK----EIGADFIVGSGHKSMAA-SAPIGVL---AMSEEWAEIVLRR  242 (382)
T ss_pred             cccc----ccCCCEEEecCccchhc-cCCeeEE---eehhHHHHHHHhh
Confidence            1111    12345889999999974 4459988   4457766655443

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=98.76  E-value=1e-06  Score=84.51  Aligned_cols=204  Identities=12%  Similarity=0.122  Sum_probs=121.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.-...-|+.  .+.+.+++.+.++..  ....| ......+|.+.++++. .       .+++.+  +++|+
T Consensus        25 ~ylD~~~g~~~~~lGh~--~p~v~~ai~~ql~~~~~~~~~~-~~~~~~~la~~l~~~~-~-------~~~v~~--~~SGs   91 (364)
T PRK04013         25 RYLDLIAGIGVNVLGHN--HPEWVEEMSEQLEKLVVAGPMF-EHEEKEEMLEELSKWV-N-------YEYVYM--GNSGT   91 (364)
T ss_pred             EEEEcccChhhccCCCC--CHHHHHHHHHHHHhcCCccCCc-CCHHHHHHHHHHHhhc-C-------CCEEEE--eCchH
Confidence            78888766422222222  234445554444321  11123 2334455666666653 1       257777  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh--------CCCC-----eEEEecccCCCCCCCHHHHHHHHHcCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND--------ARVP-----WSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~--------~G~~-----~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (363)
                      +|++.+..+.......++|+...-+|.+.......        .+..     +..+|.       .|++.+++.+.   +
T Consensus        92 eA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~i~---~  161 (364)
T PRK04013         92 EAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-------NDVEAAKEAIT---K  161 (364)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-------CCHHHHHHHhc---C
Confidence            99999977655443338999999888776432221        1111     122221       26788888875   2


Q ss_pred             CcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          229 GSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       229 ~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                      +...+++-.-+.-.|. ..+.+-+++|.++|+++|+++|+||+..++..+.    ......+ .-.+++++   |+|.+|
T Consensus       162 ~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~----~~a~~~~-gv~PDiv~---~gK~lg  233 (364)
T PRK04013        162 ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGK----FLAIEHY-KVEPDIVT---MGKGIG  233 (364)
T ss_pred             CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCc----hhHHHhc-CCCCCEEE---eccccc
Confidence            3555555544444444 4466789999999999999999999999885442    2232222 33344443   499998


Q ss_pred             cccccceEEEEeeC
Q 017967          308 LYAERIGAMNVVCS  321 (363)
Q Consensus       308 l~G~RvG~i~~v~~  321 (363)
                       .|+-+|.+  +..
T Consensus       234 -gG~P~~a~--~~~  244 (364)
T PRK04013        234 -NGVPVSLT--LTN  244 (364)
T ss_pred             -CCceeEEE--Eec
Confidence             68889988  554

>PLN02590 probable tyrosine decarboxylase

Probab=98.72  E-value=2.5e-06  Score=85.43  Aligned_cols=208  Identities=11%  Similarity=0.002  Sum_probs=134.7

Q ss_pred             cHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCccc-----CCcEEEEeccchhHHHHHHHHHHHHh---
Q 017967          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-----EQRVATVQGLSGTGSLRLAAALIERY---  174 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-----~~~i~~~~t~ggt~al~l~~~l~~~~---  174 (363)
                      ...+.+.+....... ...|....+..++.+.+.+|+.+..+.+-.     ...-++  +.||++|.-++....+..   
T Consensus       144 ~~~lgd~l~sa~n~~-~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~--~sGgSeAnl~al~aAR~~~~~  220 (539)
T PLN02590        144 AGFLGEMLNAGLSVV-GFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVI--QGTGCEAVLVVVLAARDRILK  220 (539)
T ss_pred             HHHHHHHHHHhcccc-cCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEE--cCchHHHHHHHHHHHHHHHHh
Confidence            334444444444322 245656677788888898988777665421     012233  799998875542221111   


Q ss_pred             ------CCCCEEEEcCCCCcchHHHHhhCCC---CeEEEecccCCCCCCCHHHHHHHHHcC---CCCcEEEEEcCCCCCC
Q 017967          175 ------FPGAKVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPT  242 (363)
Q Consensus       175 ------~~gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~i~~p~NPT  242 (363)
                            .|.-.|++++-++.....++...|+   +++.||+++.+++.+|++.|++++.+.   ...+.+++-+-..-.|
T Consensus       221 ~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~t  300 (539)
T PLN02590        221 KVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSS  300 (539)
T ss_pred             hhcccCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCC
Confidence                  0222566677788888999999998   588999864456899999999999752   2235566656677788


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCe-EEEEEcCccccccccccceEEEEeeC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~-vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      |.+   +.+++|.++|+++|+++-+|.+|.++..-.     +..+.+...-+. .=+...+.|.+. ..+-.|.+  ++.
T Consensus       301 Gai---Dpl~~Ia~i~~~~g~WlHVDaA~GG~al~~-----~~~r~~~~Gie~ADSit~D~HK~l~-~p~~cg~l--lvr  369 (539)
T PLN02590        301 AAV---DPLVPLGNIAKKYGIWLHVDAAYAGNACIC-----PEYRKFIDGIENADSFNMNAHKWLF-ANQTCSPL--WVK  369 (539)
T ss_pred             ccc---CCHHHHHHHHHHhCCeEEEecchhhhhhcC-----hhhHHHhcCCccCCEEEECchhhcC-cCcCEEEE--Eec
Confidence            875   677888888999999999999999986432     123333221111 223567899876 56667877  666


Q ss_pred             Chh
Q 017967          322 SSD  324 (363)
Q Consensus       322 ~~~  324 (363)
                      ++.
T Consensus       370 ~~~  372 (539)
T PLN02590        370 DRY  372 (539)
T ss_pred             CHH
Confidence            554

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=98.72  E-value=3.3e-07  Score=93.55  Aligned_cols=173  Identities=14%  Similarity=0.131  Sum_probs=113.1

Q ss_pred             CCcch-HHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeE
Q 017967          124 PIEGL-AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWS  202 (363)
Q Consensus       124 ~~~G~-~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~  202 (363)
                      ...|. .+..+.+|+.+ +.      ..-.++  ++|+|+++..+  +...+.+||.|++..-++-.....+...|++++
T Consensus       192 ~~~G~i~eAe~~AA~~f-gA------d~tyfv--vNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PV  260 (714)
T PRK15400        192 DHSGPHKEAEEYIARVF-NA------DRSYMV--TNGTSTANKIV--GMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPI  260 (714)
T ss_pred             CCChHHHHHHHHHHHHh-CC------CcEEEE--eCchHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeEE
Confidence            44454 45555666654 43      244444  89999998777  566788999999999999888888999999999


Q ss_pred             EEecccCCCC----CCC-----HHHHHHHHHcCCCCc--EEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCC
Q 017967          203 EYRYYDPKTV----GLD-----FEGMIADIKAAPGGS--FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY  271 (363)
Q Consensus       203 ~v~~~~~~~~----~~d-----~~~l~~~l~~~~~~~--~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y  271 (363)
                      +++..- +.+    +++     .+.+++.+.+.++..  +.+++.+| +=-|.++..++   |++.|..++  |++||+|
T Consensus       261 Yl~P~r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~---I~~~~~~~~--ilvDEAw  333 (714)
T PRK15400        261 YFRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDF---IKKTLDVKS--IHFDSAW  333 (714)
T ss_pred             Eecccc-cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHH---HHHHhCCCC--EEEEccc
Confidence            986421 232    335     899999998766422  24444444 33499987655   555566666  7899998


Q ss_pred             CCC-cCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          272 QGF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       272 ~~~-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      .+. .|.+.-++..++....+.++.++++.|..|.++  |+.-+.+
T Consensus       334 gah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~--alTQaS~  377 (714)
T PRK15400        334 VPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASM  377 (714)
T ss_pred             hhhhccCcccCCcChhhcCCCCCCceEEEEchhhccc--chhHHhH
Confidence            765 333211112222211222356799999999884  6655544

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=98.69  E-value=1.2e-06  Score=83.68  Aligned_cols=160  Identities=14%  Similarity=0.016  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHhcCCCCcccCCcEEEEeccc-hhHHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHHhhCCCCeEEEe
Q 017967          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLS-GTGSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYR  205 (363)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g-gt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~  205 (363)
                      .+.|+.+++++...     +..+|++  +.| ||+|++.+  +.+++.+||++++..-+..+.  ..++++.|+ +..+.
T Consensus        40 ~~~~~~l~~l~~~~-----~~~~v~~--~~gsgT~a~ea~--~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~  109 (349)
T TIGR01364        40 NEAESDLRELLNIP-----DNYEVLF--LQGGATGQFAAV--PLNLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVA  109 (349)
T ss_pred             HHHHHHHHHHhCCC-----CCceEEE--EcCCchHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEe
Confidence            34455555554321     1345666  655 99999999  666677999988887666443  557788898 77666


Q ss_pred             cccC--CCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCch
Q 017967          206 YYDP--KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (363)
Q Consensus       206 ~~~~--~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~  283 (363)
                      ..+.  +...++++.++.  +   ++..++.+++..|.||+..+        ++++.+++++++|.+ +.+...+.    
T Consensus       110 ~~~~~~~~~~~~~~~~~~--~---~~~~~v~~th~ETstGv~~~--------~l~~~~~~l~iVDav-ss~g~~~i----  171 (349)
T TIGR01364       110 SGKEGNYTKIPDPSTWEI--S---EDAAYVHYCANETIHGVEFR--------ELPDVKNAPLVADMS-SNILSRPI----  171 (349)
T ss_pred             ccccCCCCCCCCHHhcCC--C---CCCCEEEEcCCCCcccEecc--------eecccCCCeEEEEcc-ccccCccC----
Confidence            4311  233456665542  2   24567777888899999765        446668999999999 44443221    


Q ss_pred             hHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHH
Q 017967          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (363)
Q Consensus       284 ~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~  328 (363)
                       .+.    .-+  +++.|--|.+|.+|  +|.+  +.. ++.+++
T Consensus       172 -d~~----~~d--~~~~ssqK~lgP~G--lg~l--~~s-~~~~~~  204 (349)
T TIGR01364       172 -DVS----KFG--LIYAGAQKNIGPAG--LTVV--IVR-KDLLGR  204 (349)
T ss_pred             -CHH----Hcc--EEEEecccccCCCc--eEEE--EEC-HHHHhh
Confidence             121    112  88888899999888  5777  554 554443

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=98.68  E-value=1.8e-06  Score=85.26  Aligned_cols=220  Identities=16%  Similarity=0.060  Sum_probs=119.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|.-...-|+  -.+.+.+++.+.+... ....|.......+|.+.+++..-.      ..+++.+  +++|++
T Consensus        83 ~ylD~~~g~~~~~lGH--~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~------~~~~v~f--~~SGsE  152 (459)
T PRK11522         83 EFIDCLGGFGIFNVGH--RNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPG------KLKYSFF--CNSGTE  152 (459)
T ss_pred             EEEECCcCHHhhhcCC--CCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCC------CCCEEEE--eCCchH
Confidence            6788766621111222  2345556655544321 112232333333444444444211      1257777  999999


Q ss_pred             HHHHHHHHHHHhCC--C-CEEEEcCCCCcchHHHH-hhCCCCeEE---EecccCCC--CCCCHHHHHHHHHc---CCCCc
Q 017967          163 SLRLAAALIERYFP--G-AKVLISSPTWGNHKNIF-NDARVPWSE---YRYYDPKT--VGLDFEGMIADIKA---APGGS  230 (363)
Q Consensus       163 al~l~~~l~~~~~~--g-d~Vlv~~P~y~~~~~~~-~~~G~~~~~---v~~~~~~~--~~~d~~~l~~~l~~---~~~~~  230 (363)
                      |.+.+..+.+.+..  | .+|+...-+|.+..... ...|-....   .|..+.-.  .-.|.+.+++.+..   .+++.
T Consensus       153 Ave~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i  232 (459)
T PRK11522        153 SVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDV  232 (459)
T ss_pred             HHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcE
Confidence            99999776655542  3 36888887886664322 222211100   11100000  01267778877753   22334


Q ss_pred             EEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          231 FILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       231 ~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ..+++-.-+.-.|.. .+.+-++++.++|+++|+++|.||+..+|.-.+   ..+....+ .-.++++   +|+|.+| .
T Consensus       233 AavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~~a~e~~-gv~PDiv---t~gK~lg-g  304 (459)
T PRK11522        233 AAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTG---KMFACEHE-NVQPDIL---CLAKALG-G  304 (459)
T ss_pred             EEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccc---hhhhhhcc-CCCCCEE---Eechhhh-C
Confidence            445544444445664 466788999999999999999999987774222   12222211 2223333   7899998 6


Q ss_pred             c-ccceEEEEeeCChh
Q 017967          310 A-ERIGAMNVVCSSSD  324 (363)
Q Consensus       310 G-~RvG~i~~v~~~~~  324 (363)
                      | +-+|.+  ++. ++
T Consensus       305 G~~Pigav--~~~-~~  317 (459)
T PRK11522        305 GVMPIGAT--IAT-EE  317 (459)
T ss_pred             CCccceeE--EEc-HH
Confidence            7 588998  665 55

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=98.67  E-value=5e-06  Score=82.23  Aligned_cols=225  Identities=14%  Similarity=0.126  Sum_probs=123.0

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+++ .++|+..|.-...-|+  -.+.+.+++.+.++...  ...|.......+|-+.+++.+-      ...+++.+ 
T Consensus        49 D~dG~-~ylD~~~g~~~~~lGh--~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p------~~~~~v~f-  118 (457)
T PRK05639         49 DVDGN-VFIDFLAGAAAASTGY--SHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISP------IENPKVLF-  118 (457)
T ss_pred             eCCCC-EEEECCcCHHhhccCC--CCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCC------CCcCEEEE-
Confidence            33443 7888877642222222  23455555555443211  1123222233345555554421      11257877 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCC--------C-----CeEEEecccCCC--CC----CC
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDAR--------V-----PWSEYRYYDPKT--VG----LD  215 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~-~~~~G--------~-----~~~~v~~~~~~~--~~----~d  215 (363)
                       +.+|++|.+.+..+........+|+...-+|.+.... ....|        .     .+..+|..+...  +.    -+
T Consensus       119 -~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  197 (457)
T PRK05639        119 -GLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEE  197 (457)
T ss_pred             -eCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCC
Confidence             9999999999977655554446788888888665332 11111        1     133344311100  00    02


Q ss_pred             H--------HHHHHHHHc---CCCCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCch
Q 017967          216 F--------EGMIADIKA---APGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (363)
Q Consensus       216 ~--------~~l~~~l~~---~~~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~  283 (363)
                      .        +.+++.+..   .++....+++-.-+--.|. ..+.+-+++|.++|+++|+++|.||+..+|.-.+   ..
T Consensus       198 ~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~  274 (457)
T PRK05639        198 PDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTG---KW  274 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCc---hH
Confidence            2        234444321   1334555555444555566 4567889999999999999999999998874332   12


Q ss_pred             hHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       284 ~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      +....+ .-.+++++   |+|.++ .|+-+|.+  ++. ++
T Consensus       275 ~a~~~~-gv~PDiv~---~gK~l~-gG~pi~av--~~~-~~  307 (457)
T PRK05639        275 FASEWF-EVKPDLII---FGKGVA-SGMGLSGV--IGR-KE  307 (457)
T ss_pred             HHHHhc-CCCCCEEE---echhhc-CCCcceeE--Eeh-HH
Confidence            222222 22345444   799998 78888988  654 55

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.67  E-value=2.8e-06  Score=80.34  Aligned_cols=237  Identities=16%  Similarity=0.168  Sum_probs=139.4

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHcc--CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      ..+|||..|.-...-|+.  .|.+.+++.+..+.  .....|.     .+.+.++|+.+-...+   ..++|++  +++|
T Consensus        42 ~~YlDf~~Giav~~lGH~--hP~iv~al~~Q~~kl~h~sn~~~-----~~~~~~la~~L~~~s~---~~d~vff--~NSG  109 (404)
T COG4992          42 REYLDFAAGIAVNNLGHC--HPALVEALKEQAEKLWHVSNLFY-----NEPQAELAEKLVELSP---FADRVFF--CNSG  109 (404)
T ss_pred             CEeeeeccceeeeccCCC--CHHHHHHHHHHHHHhhhcccccC-----ChHHHHHHHHHHhhCc---cccEEEE--cCCc
Confidence            379998887643333432  45555555444321  1112232     2334444444433221   1589988  9999


Q ss_pred             hHHHHHHHHHHHHhCC--C-CEEEEcCCCCcchHHHHhhCCC-------------CeEEEecccCCCCCCCHHHHHHHHH
Q 017967          161 TGSLRLAAALIERYFP--G-AKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGMIADIK  224 (363)
Q Consensus       161 t~al~l~~~l~~~~~~--g-d~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l~~~l~  224 (363)
                      ++|++.+..+.+.+..  + .+|+...-+|.+-....-..+.             .+..+|+       -|++.+++++.
T Consensus       110 aEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpf-------nDi~al~~ai~  182 (404)
T COG4992         110 AEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPF-------NDIEALEAAID  182 (404)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCC-------CCHHHHHHHhc
Confidence            9999999776666553  2 3676666666432211111111             1233333       27899999998


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCc
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s~-~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  303 (363)
                      +   .+..+++-.-+=-.|+..+. +-++++-++|++||+++|.||+-.++.-.+   ..+....+ .-.++++   .+.
T Consensus       183 ~---~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTG---k~fA~e~~-gV~PDI~---tla  252 (404)
T COG4992         183 E---DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG---KLFAYEHY-GVEPDIL---TLA  252 (404)
T ss_pred             c---CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccc---hHHHHHHh-CCCCCEE---Eee
Confidence            4   56666665657777877665 556778899999999999999988886443   23333222 2223433   468


Q ss_pred             cccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccc
Q 017967          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       304 K~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                      |.+| .|+-||.+  ++. +.    +.+.+....-...++-++++-.+....|
T Consensus       253 K~Lg-GG~PigA~--la~-~~----~~~~~~~G~HgSTfGGNpLacAv~~a~l  297 (404)
T COG4992         253 KALG-GGFPIGAM--LAT-EE----IASAFTPGDHGSTFGGNPLACAVALAVL  297 (404)
T ss_pred             cccc-CCccceee--EEc-hh----hhhcCCCCcccCCCCcCHHHHHHHHHHH
Confidence            9998 89999999  665 43    3333443333344455666555554433

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=98.67  E-value=1.1e-06  Score=84.26  Aligned_cols=191  Identities=10%  Similarity=-0.058  Sum_probs=116.6

Q ss_pred             CCccccHHHHHHHHHHHcc------C--CCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHH
Q 017967           98 LQPYVLDVVKKAENLMLER------G--ENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA  167 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~------~--~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~  167 (363)
                      |+..+++.|++++.+....      +  ...++.+  ..-..+.++.+++++...     ++.++++ .+.+|+++++.+
T Consensus        10 GP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-----~~~~v~~-~~gsgt~~~Ea~   83 (360)
T PRK05355         10 GPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIP-----DNYKVLF-LQGGASLQFAMV   83 (360)
T ss_pred             CCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-----CCcEEEE-EcCCchHHHHHH
Confidence            5567788999988765411      0  0011211  023355666666665421     1234433 368889999988


Q ss_pred             HHHHHHhCCCCEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHH-HHHcCCCCcEEEEEcCCCCCCCC
Q 017967          168 AALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIA-DIKAAPGGSFILLHGCAHNPTGI  244 (363)
Q Consensus       168 ~~l~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~-~l~~~~~~~~~~~i~~p~NPTG~  244 (363)
                        +.+++.+||++++..-+..+.  .+++++.|.. ..+..... ....+..++++ .+++   +..++.+++..|.||+
T Consensus        84 --~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~-~g~~~~~~~~~~~l~~---~~~~V~~th~eTstGv  156 (360)
T PRK05355         84 --PMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSED-DGFTYIPPLDEWQLSD---DAAYVHYTSNETIDGT  156 (360)
T ss_pred             --HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccc-cCCCCCCChhhccCCC---CCCEEEEccCCCcceE
Confidence              778888999988887666444  4567788865 55554211 22344444444 5543   3557777888899999


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       245 ~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      ..+  ++.+|      +|+++|+|.+ +.+...+.     .+.    .-+  +++.|--|.+|.+|+  |.+  +.. ++
T Consensus       157 ~~~--~i~~i------~g~l~vVDav-ss~g~~~i-----dv~----~~d--~~~~ssqK~lgP~Gl--g~l--~~s-~~  211 (360)
T PRK05355        157 EFH--ELPDT------GDVPLVADMS-SDILSRPI-----DVS----KFG--LIYAGAQKNIGPAGL--TIV--IVR-ED  211 (360)
T ss_pred             ecC--ccccc------CCCcEEEEcC-ccccCccC-----CHH----Hcc--EEEEeccccccCCce--EEE--EEC-HH
Confidence            984  34444      8999999999 44443221     221    112  778888999997774  777  554 55


Q ss_pred             HH
Q 017967          325 LA  326 (363)
Q Consensus       325 ~~  326 (363)
                      .+
T Consensus       212 ~l  213 (360)
T PRK05355        212 LL  213 (360)
T ss_pred             HH
Confidence            33

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=98.66  E-value=4.5e-06  Score=80.40  Aligned_cols=238  Identities=11%  Similarity=0.055  Sum_probs=145.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      -.|||-.    | .+...+.+.+++++..    ++ ..|.......+|.+.+++++ +.       +.++.  |..|+++
T Consensus        42 V~IDLrS----D-TgT~apS~~m~aAM~~----GD-D~Y~gdpSv~~Lee~vael~-G~-------E~alp--thqGRga  101 (467)
T TIGR02617        42 VFIDLLT----D-SGTGAVTQSMQAAMMR----GD-EAYSGSRSYYALAESVKNIF-GY-------QYTIP--THQGRGA  101 (467)
T ss_pred             eEEECcc----C-CCCCCCCHHHHHHHHc----CC-cccccCchHHHHHHHHHHHh-CC-------ceEEE--CCCCchH
Confidence            4677752    2 2222356777777654    22 56888888999999999986 33       45555  8888999


Q ss_pred             HHHHHHHHHHhC-CCCEEEEcCC--------CCcchHHHHhhCCCCeEEEecc--------cCCCCCCCHHHHHHHHHcC
Q 017967          164 LRLAAALIERYF-PGAKVLISSP--------TWGNHKNIFNDARVPWSEYRYY--------DPKTVGLDFEGMIADIKAA  226 (363)
Q Consensus       164 l~l~~~l~~~~~-~gd~Vlv~~P--------~y~~~~~~~~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~l~~~  226 (363)
                      -.++..  ..+. |||.+.+..+        .|..........|+.++.++..        .+.++.+|++.+++.+++.
T Consensus       102 E~Il~~--~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~  179 (467)
T TIGR02617       102 EQIYIP--VLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEV  179 (467)
T ss_pred             HHHHHH--hhcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhc
Confidence            878743  3355 6777765443        2333345667889888776432        2235789999999999852


Q ss_pred             C-CC---cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC----CC------cCCCCCCchhHHHHH---
Q 017967          227 P-GG---SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ----GF------ASGSLDNDASSVRLF---  289 (363)
Q Consensus       227 ~-~~---~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~----~~------~~~~~~~~~~~~~~~---  289 (363)
                      . ++   ...=+.||-  =-|..+|.+.++++.++|++||+.++.|.+=.    -|      .+.     ..++..+   
T Consensus       180 g~~~i~~v~~tlt~N~--~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~-----~~si~eI~rE  252 (467)
T TIGR02617       180 GPNNVPYIVATITCNS--AGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYK-----NWSIEQITRE  252 (467)
T ss_pred             CCCCceeeeeeEEEec--CCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhc-----CCCHHHHHHH
Confidence            1 11   111222222  24889999999999999999999999998621    11      121     1233333   


Q ss_pred             -HhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhh-----hccccCCCchHHHHHHhcccc
Q 017967          290 -ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL-----ARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       290 -~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~-----~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       .+..  ..+.-|+||.+|.|   +|-+. ++.+++..+ +.++++..     .-.++.+.+.--..+++..|.
T Consensus       253 ~~~~a--Dsvt~slsKglgAp---vGg~L-ag~d~~~~~-l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~  319 (467)
T TIGR02617       253 TYKYA--DMLAMSAKKDAMVP---MGGLL-CFKDDSFFD-VYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY  319 (467)
T ss_pred             hhccC--CEEEEEcCCCCCCc---ccceE-EecchhHHH-HHHHHHhhcccccCCcCcCchhHHHHHHHHhhhh
Confidence             2322  25577999999876   56552 344442111 22333222     134455677766777665544

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=98.66  E-value=4.1e-06  Score=83.84  Aligned_cols=192  Identities=11%  Similarity=0.021  Sum_probs=120.6

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCC-Cc--------ccCCcEEEEeccchhHHHHHHHHHHHHh--C-------------
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADN-SV--------LKEQRVATVQGLSGTGSLRLAAALIERY--F-------------  175 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~-~~--------~~~~~i~~~~t~ggt~al~l~~~l~~~~--~-------------  175 (363)
                      ..+.......++.+.+.+|+.+..+ .+        -.++.-..+.|.|||.|.-.+....+..  .             
T Consensus       119 ~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl  198 (522)
T TIGR03799       119 VKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGL  198 (522)
T ss_pred             ceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccc
Confidence            3344455566777777777644321 10        0111121223899999976653222211  0             


Q ss_pred             ---------CCCEEEEcCCCCcchHHHHhhCCC---CeEEEecccCCCCCCCHHHHHHHHHc---CCCCcEEEEEcCCCC
Q 017967          176 ---------PGAKVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHN  240 (363)
Q Consensus       176 ---------~gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~~~~~~i~~p~N  240 (363)
                               ++..|++++-.+......++..|+   +++.+|++  +++.+|++.|++.+++   ...+.++++.+..++
T Consensus       199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d--~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt  276 (522)
T TIGR03799       199 FAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTD--ANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTT  276 (522)
T ss_pred             hhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeC--CCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCc
Confidence                     134688888888888888888888   78999984  4679999999998863   222344455456677


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC-CeEEEEEcCccccccccccceEEEEe
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG-MELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      .||.+-+.   ++|+++|+++|+++.+|.+|.+...-.     ...+..+..- .-..+..+..|.++. -.-+|.+  +
T Consensus       277 ~tGaiDpl---~eIa~i~~~~g~~lHVDaA~gg~~~~~-----~~~r~~l~gle~aDSit~d~HK~l~~-P~g~G~l--l  345 (522)
T TIGR03799       277 ETGNIDPL---DEMADIAQELGCHFHVDAAWGGATLLS-----NTYRHLLKGIERADSVTIDAHKQLYV-PMGAGMV--L  345 (522)
T ss_pred             CCCCcCCH---HHHHHHHHHcCCeEEEEchhhhHHHhC-----HHHHHHhcCchhCCEEEEChhhcCCc-CcccEEE--E
Confidence            99998765   556677999999999999988654321     1122222221 234567888996542 3447888  6


Q ss_pred             eCChh
Q 017967          320 CSSSD  324 (363)
Q Consensus       320 ~~~~~  324 (363)
                      ..++.
T Consensus       346 vr~~~  350 (522)
T TIGR03799       346 FKDPA  350 (522)
T ss_pred             EeCHH
Confidence            66665

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.66  E-value=1.2e-06  Score=84.22  Aligned_cols=208  Identities=13%  Similarity=0.057  Sum_probs=126.6

Q ss_pred             cHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC---CcEEEEeccchhHHHHHHHHHHHHh-----
Q 017967          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE---QRVATVQGLSGTGSLRLAAALIERY-----  174 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~---~~i~~~~t~ggt~al~l~~~l~~~~-----  174 (363)
                      ...+.+.+...++... ..|.......++.+.+.+++.+..+.+-+.   ..-..+.|.|||+++..+....+..     
T Consensus        53 ~~i~~~~l~~~~n~n~-~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~  131 (373)
T PF00282_consen   53 ASILADLLASALNQNG-FTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRS  131 (373)
T ss_dssp             HHHHHHHHHHHHT-BT-TSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccc-cccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhh
Confidence            3445555555554432 445555667788888888887766654111   0112223899999987653221111     


Q ss_pred             -CCC-----C-EEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC---CCcEEEEEcCCCCCCCC
Q 017967          175 -FPG-----A-KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLHGCAHNPTGI  244 (363)
Q Consensus       175 -~~g-----d-~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~i~~p~NPTG~  244 (363)
                       ..|     + .|++++-++......+...|+.++.||+++  ++.+|++.|++.+.+..   ..+.+++.+.+...||.
T Consensus       132 ~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga  209 (373)
T PF00282_consen  132 KAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGA  209 (373)
T ss_dssp             HHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSB
T ss_pred             hhcccccccccccccccccccHHHHhcceeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCccccc
Confidence             012     2 466666678888999999999999999953  67899999999886521   22445555567778887


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeE-EEEEcCccccccccccceEEEEeeCCh
Q 017967          245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL-LVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       245 ~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~v-i~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      +   +++++|+++|+++++++-+|.+|.+...-..+  ...   +...-+++ =+..++.|.++ .-+..|++  ...++
T Consensus       210 ~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~--~~~---~~~gi~~adSit~d~HK~l~-~P~~~~~~--l~r~~  278 (373)
T PF00282_consen  210 I---DPLEEIADICEKYNIWLHVDAAYGGSALLSPE--YRH---LLFGIERADSITIDPHKWLG-VPYGCGVL--LVRDK  278 (373)
T ss_dssp             B----SHHHHHHHHHHCT-EEEEEETTGGGGGGHCT--TGG---GGTTGGGESEEEEETTTTTS--SSS-EEE--EESSG
T ss_pred             c---cCHHHHhhhccccceeeeeccccccccccccc--ccc---cccccccccccccchhhhhc-CCccceeE--Eeecc
Confidence            6   77888999999999999999999984321111  111   11111111 22457899887 45678888  77776


Q ss_pred             h
Q 017967          324 D  324 (363)
Q Consensus       324 ~  324 (363)
                      .
T Consensus       279 ~  279 (373)
T PF00282_consen  279 S  279 (373)
T ss_dssp             G
T ss_pred             c
Confidence            6

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02880 tyrosine decarboxylase

Probab=98.64  E-value=5.4e-06  Score=82.61  Aligned_cols=192  Identities=9%  Similarity=-0.020  Sum_probs=125.8

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCccc-----CCcEEEEeccchhHHHHHHHHHHHH--hC-------CCCEEEEcCC
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLK-----EQRVATVQGLSGTGSLRLAAALIER--YF-------PGAKVLISSP  185 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-----~~~i~~~~t~ggt~al~l~~~l~~~--~~-------~gd~Vlv~~P  185 (363)
                      ..|....+..++.+.+.+|+....+.+-.     ...-++  |.|||.|..++....+.  +.       +.-.|++++-
T Consensus       112 ~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~--tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~  189 (490)
T PLN02880        112 FSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVI--QGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQ  189 (490)
T ss_pred             cccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEE--cCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCC
Confidence            33444556677888888887766554311     012334  78999987665322211  10       1124667777


Q ss_pred             CCcchHHHHhhCCCC---eEEEecccCCCCCCCHHHHHHHHHcC---CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Q 017967          186 TWGNHKNIFNDARVP---WSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (363)
Q Consensus       186 ~y~~~~~~~~~~G~~---~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~  259 (363)
                      ++.....++...|+.   ++.||+++..++.+|++.|++.+.+.   ...+.+++-+-+.-.||.+-+   +++|.++|+
T Consensus       190 aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~~  266 (490)
T PLN02880        190 THSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIAK  266 (490)
T ss_pred             chHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHHH
Confidence            888899999999984   78899864446789999999998742   233566666667888998765   556677799


Q ss_pred             hcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-CCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       260 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      ++|+++.+|.+|.++..-.     +..+..+.. ..-.-+..++.|.++ .-.-.|.+  ...+.+
T Consensus       267 ~~~iwlHVDaA~gg~~~~~-----~~~~~~l~gie~aDSit~d~HKwl~-~P~~~g~l--lvr~~~  324 (490)
T PLN02880        267 SNGMWFHVDAAYAGSACIC-----PEYRHYIDGVEEADSFNMNAHKWFL-TNFDCSLL--WVKDRN  324 (490)
T ss_pred             HcCCEEEEehhhHHHHHhC-----HHHHHHhcCchhcCEEEECchhhcC-CCccEEEE--EEeCHH
Confidence            9999999999998875431     122222221 112356788899885 66777888  555443

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=98.64  E-value=6.6e-06  Score=81.61  Aligned_cols=203  Identities=14%  Similarity=0.085  Sum_probs=110.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCC------CCCcchHHHHHH----HHHHHhcCCCCcccCCcE-
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY------LPIEGLAAFNKV----TAELLFGADNSVLKEQRV-  152 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y------~~~~G~~~lr~a----ia~~l~~~~~~~~~~~~i-  152 (363)
                      +.|+|-..++       ++.+.+.++....+......+|      +...-..++.+.    ..+.+...      +..+ 
T Consensus        35 ~~l~liasen-------~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~------~~~~~  101 (475)
T PLN03226         35 KGLELIASEN-------FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLD------PEKWG  101 (475)
T ss_pred             cCeeEecCCc-------cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCC------cceeE
Confidence            6788876664       3466788777666522111222      222223333321    22222221      2233 


Q ss_pred             EEEeccchhHHHHHHHHHHHHhCCCCEEEEcCC---CCcchHHHHh-----hCCCCeE--EEecccCCCCCCCHHHHHHH
Q 017967          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSP---TWGNHKNIFN-----DARVPWS--EYRYYDPKTVGLDFEGMIAD  222 (363)
Q Consensus       153 ~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P---~y~~~~~~~~-----~~G~~~~--~v~~~~~~~~~~d~~~l~~~  222 (363)
                      +-++..+|+.|...+  +.+++.|||+|+..+.   ++..+.....     ..+..+.  ++..+ .+++.+|++.+++.
T Consensus       102 ~nv~~~SG~~AN~av--~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~-~~~g~iD~d~Le~~  178 (475)
T PLN03226        102 VNVQPLSGSPANFAV--YTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLD-ESTGLIDYDKLEKK  178 (475)
T ss_pred             EecCcCchHHHHHHH--HHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeec-CCCCCcCHHHHHHH
Confidence            334567888886666  6777889999998553   3333222221     1111111  33333 34678999999999


Q ss_pred             HHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC-CcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       223 l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      +.+.  +++++++ ..++ +|...+.   ++|.++|+++|.++++|++..- +...+..+  .+    .+  .-.+++.|
T Consensus       179 l~~~--~pklIv~-~~S~-~s~~~D~---a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~--~p----~~--~~Div~~t  243 (475)
T PLN03226        179 AMLF--RPKLIIA-GASA-YPRDWDY---ARMRKIADKVGALLMCDMAHISGLVAAQEAA--SP----FE--YCDVVTTT  243 (475)
T ss_pred             Hhhc--CCeEEEE-ecCc-CCCccCH---HHHHHHHHHcCCEEEEEchhhhCcccCCCCC--CC----CC--CCeEEEec
Confidence            8742  2444443 3333 5665554   4666779999999999998432 22111100  01    11  23377899


Q ss_pred             CccccccccccceEEEEeeC
Q 017967          302 YSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ++|.++  |-+-|++  .+.
T Consensus       244 ~hK~L~--GP~Gg~I--~~~  259 (475)
T PLN03226        244 THKSLR--GPRGGMI--FFR  259 (475)
T ss_pred             Cccccc--CCCceEE--EEc
Confidence            999983  3343777  554

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=98.63  E-value=4.1e-07  Score=87.93  Aligned_cols=185  Identities=15%  Similarity=0.030  Sum_probs=110.6

Q ss_pred             ccccHH-HHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc-chhHHHHHHHHHHHHhC
Q 017967          100 PYVLDV-VKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL-SGTGSLRLAAALIERYF  175 (363)
Q Consensus       100 ~~~~~~-v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~-ggt~al~l~~~l~~~~~  175 (363)
                      ..+++. |.+++.......  .++.+  ..-..+.|+.+++++...     ++++|++  +. +||++++.+  +..++.
T Consensus        21 ~~~~~~~v~~a~~~~~~~~--~hr~~~f~~~~~~~r~~l~~l~~~~-----~~~~v~~--~~gs~T~~~~~~--~~~l~~   89 (378)
T PRK03080         21 CKKRPGWQLEALADALLGR--SHRQKPVKALLKRVIEGTRELLSLP-----EGYEVGI--VPGSDTGAWEMA--LWSLLG   89 (378)
T ss_pred             cCCChHHHHHHHHhhhccc--CcCCHHHHHHHHHHHHHHHHHhCCC-----CCceEEE--ECCchHHHHHHH--HHhcCC
Confidence            444555 777776543211  11111  233467778888876432     1356766  64 899999998  444455


Q ss_pred             C-CCEEEEcCCCCcc-hHH-HHhhCCC-CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHH
Q 017967          176 P-GAKVLISSPTWGN-HKN-IFNDARV-PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQW  251 (363)
Q Consensus       176 ~-gd~Vlv~~P~y~~-~~~-~~~~~G~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~  251 (363)
                      + ++.|++ .-.|+. +.. +.++.|+ +++.++.+  ++..+|+++++.        ++++.+++.+|.||..++.+++
T Consensus        90 ~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~--~g~~~d~~~i~~--------~~~V~~~h~~t~tG~~~pi~~I  158 (378)
T PRK03080         90 ARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEAD--YGSLPDLSAVDF--------DRDVVFTWNGTTTGVRVPVARW  158 (378)
T ss_pred             CCcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccC--CCCCCCHhhcCC--------CCCEEEEecCCccceeccchhh
Confidence            4 344444 333433 222 2357899 88888763  445667666331        2245668889999999986655


Q ss_pred             HHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc-ccccceEEEEeeCChhHHHH
Q 017967          252 EKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAAR  328 (363)
Q Consensus       252 ~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l-~G~RvG~i~~v~~~~~~~~~  328 (363)
                         ++  +++|+++|+|.+ +.+...+.     .+..      -.+++.|.-|.++. +|  +|++  +.. ++.+++
T Consensus       159 ---~~--~~~g~~~vVDa~-qs~G~~pi-----dv~~------iD~~~~s~~K~l~~P~G--~g~l--~v~-~~~~~~  214 (378)
T PRK03080        159 ---IG--ADREGLTICDAT-SAAFALPL-----DWSK------LDVYTFSWQKVLGGEGG--HGMA--ILS-PRAVER  214 (378)
T ss_pred             ---cc--ccCCCeEEEecc-cccccCCC-----CHHH------CcEEEEehhhhCCCCCc--eEEE--EEC-HHHHHh
Confidence               44  678999999988 55543321     1211      14778888998864 56  5777  554 554443

>PLN02271 serine hydroxymethyltransferase

Probab=98.63  E-value=6.8e-06  Score=81.44  Aligned_cols=205  Identities=16%  Similarity=0.145  Sum_probs=121.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCC------CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL------PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      ..|+|=..++       ++.+.+.+++...+......+|+      ....+.++.....+.....++.....+.+- +|.
T Consensus       149 ~~l~LIASEN-------~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaN-VQp  220 (586)
T PLN02271        149 KGIELIASEN-------FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVN-VQP  220 (586)
T ss_pred             cCeeeccccc-------cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccc-eee
Confidence            6788876553       34677887765554322222232      222233333222222222222222122111 345


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH---------hhCCCCeEEEe--cccCCCCCCCHHHHHHHHHcC
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---------NDARVPWSEYR--YYDPKTVGLDFEGMIADIKAA  226 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~---------~~~G~~~~~v~--~~~~~~~~~d~~~l~~~l~~~  226 (363)
                      .+|+.|...+  +..++.|||+|+..+..+.++....         ...|+.+..++  ++ ++++.+|.+++++.... 
T Consensus       221 ~SGs~AN~aV--~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d-~~~g~IDyd~lek~a~~-  296 (586)
T PLN02271        221 YSCTSANFAV--YTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVN-PQTGYIDYDKLEEKALD-  296 (586)
T ss_pred             ccHHHHHHHH--HHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccc-cccCccCHHHHHHHhhh-
Confidence            6888887777  6677889999999999888775532         34565555555  43 35678999999985443 


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC-CCcCCCCCCchhHHHHHHhcCCeEEEEEcCccc
Q 017967          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (363)
Q Consensus       227 ~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  305 (363)
                       .+++++++..-.||  ..++   +++|.++|+++|+++++|.+.. ++...+..+.  ++    .  .-.++..|..|.
T Consensus       297 -~rPKLII~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~s--P~----~--~aDvvt~TTHKt  362 (586)
T PLN02271        297 -FRPKILICGGSSYP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVN--PF----D--YCDIVTSTTHKS  362 (586)
T ss_pred             -cCCeEEEECchhcc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCC--CC----c--CCcEEEeCCccc
Confidence             45678877777788  4444   4455666899999999999953 3332221110  11    1  134788999998


Q ss_pred             cccccccceEE
Q 017967          306 LGLYAERIGAM  316 (363)
Q Consensus       306 ~~l~G~RvG~i  316 (363)
                      +.  |=|-|.+
T Consensus       363 Lr--GPrGG~I  371 (586)
T PLN02271        363 LR--GPRGGII  371 (586)
T ss_pred             CC--CCCceEE
Confidence            84  6676888

>PRK07482 hypothetical protein; Provisional

Probab=98.63  E-value=9.2e-06  Score=80.48  Aligned_cols=227  Identities=14%  Similarity=0.090  Sum_probs=122.8

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      +.+++ .+||+..|.-...-|+  -.+.+.+++.+.++... ...+ . .-..+.+..+|+.+......  .-+++.+  
T Consensus        46 D~dG~-~ylD~~sg~~~~~lGh--~~p~v~~Av~~q~~~~~~~~~~-~-~~~~~~~~~lAe~L~~~~p~--~~~~v~f--  116 (461)
T PRK07482         46 DAQGR-RYIDAFAGLYCVNVGY--GRTEVAEAIAEQAKELAYYHTY-V-GHGTEASITLSKRIIDRAPA--GMSKVYY--  116 (461)
T ss_pred             ECCCC-EEEEcccchhhhcCCC--CCHHHHHHHHHHHHhcCccccc-c-ccCCHHHHHHHHHHHHhCCC--CcCEEEE--
Confidence            34443 7888887753222232  24556666655553311 0111 0 01123334444444332111  1367877  


Q ss_pred             ccchhHHHHHHHHHHHHh----C-CC-CEEEEcCCCCcchHHHHh-h---------CC---CCeEEEecccCCC---CC-
Q 017967          157 GLSGTGSLRLAAALIERY----F-PG-AKVLISSPTWGNHKNIFN-D---------AR---VPWSEYRYYDPKT---VG-  213 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~----~-~g-d~Vlv~~P~y~~~~~~~~-~---------~G---~~~~~v~~~~~~~---~~-  213 (363)
                      +.+|++|.+.+..+...+    . +| .+|+...-+|.+...... .         .+   -.+..++......   .+ 
T Consensus       117 ~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  196 (461)
T PRK07482        117 GLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGM  196 (461)
T ss_pred             eCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCC
Confidence            999999999997665443    1 22 568888888866432111 1         11   0122222100000   00 


Q ss_pred             -------CCHHHHHHHHHc-CCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchh
Q 017967          214 -------LDFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (363)
Q Consensus       214 -------~d~~~l~~~l~~-~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~  284 (363)
                             -+++.+++.+.. .++....+++-.-+.-.|.. .+.+-+++|.++|++||+++|.||+..+|.-.+   ..+
T Consensus       197 ~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~~~  273 (461)
T PRK07482        197 SEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLG---SMF  273 (461)
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc---chh
Confidence                   135777777743 22334455544444445666 567899999999999999999999999994322   122


Q ss_pred             HHHHHHhcCCeEEEEEcCccccccccc-cceEEEEeeCChh
Q 017967          285 SVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSD  324 (363)
Q Consensus       285 ~~~~~~~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~  324 (363)
                      ....+ +-.+++++   |+|.++ .|+ -+|.+  ++. ++
T Consensus       274 a~~~~-gv~PDiv~---~gKgl~-gG~~Pi~av--~~~-~~  306 (461)
T PRK07482        274 GSDHY-GIEPDLIT---VAKGLT-SAYAPLSGS--IVG-EK  306 (461)
T ss_pred             hHHhc-CCCCCEEE---Eccccc-cCcccccee--eec-HH
Confidence            22222 33345554   489997 675 78887  554 55

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=98.62  E-value=4.9e-06  Score=80.70  Aligned_cols=254  Identities=15%  Similarity=0.129  Sum_probs=143.5

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+++ .+|||..|.....-|+  -.|.|.+++.+.++.-  ....|......-++-+.+.+.+-..     ....+++ 
T Consensus        52 DvdG~-~ylDf~sgi~v~~~GH--~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~-----~~~~~~f-  122 (447)
T COG0160          52 DVDGN-EYLDFLSGIAVLNLGH--NHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGS-----GLKKVFF-  122 (447)
T ss_pred             eCCCC-EEEEcccCcchhccCC--CCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcc-----cCCeEEe-
Confidence            34444 7889888654333333  2456666665544321  1133333233334444444443221     2466777 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-Hh--------h-----CCCCeEEEecccCC--CCCC-----
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FN--------D-----ARVPWSEYRYYDPK--TVGL-----  214 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~-~~--------~-----~G~~~~~v~~~~~~--~~~~-----  214 (363)
                       +++|++|.+.+..+.........|+...-+|.+.... +.        .     ..-.+..+|+.+.-  .++.     
T Consensus       123 -~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~  201 (447)
T COG0160         123 -GNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEEC  201 (447)
T ss_pred             -cCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhh
Confidence             9999999999977766555557788888777554322 11        1     11125555542211  1111     


Q ss_pred             ---CHHHHHHHHHc---CCCCcEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHH
Q 017967          215 ---DFEGMIADIKA---APGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (363)
Q Consensus       215 ---d~~~l~~~l~~---~~~~~~~~~i~~p~NPTG~~~s~-~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~  287 (363)
                         ..+.++..+..   .+.....+++=.-+.-.|...++ +-++++.++|++||+++|+||+-.+|.-.+   ..+.+.
T Consensus       202 ~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG---~~fa~E  278 (447)
T COG0160         202 GDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG---KMFAFE  278 (447)
T ss_pred             hHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc---cchhhh
Confidence               23334443332   33445666666667777876655 556789999999999999999998887653   344544


Q ss_pred             HHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       288 ~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      .+ .--++++   .|||.+| .|+-+|.+  +.. ++    +.+ ...-.-...++-++++..++...|+
T Consensus       279 ~~-gv~PDiv---t~aK~ig-~G~Pl~av--v~r-~e----i~~-~~~g~~~~Tf~GNpva~Aaa~AvL~  335 (447)
T COG0160         279 HF-GVEPDIV---TLAKSLG-GGLPLSAV--VGR-AE----IMD-WPPGGHGGTFGGNPVACAAALAVLD  335 (447)
T ss_pred             hc-CCCCCEE---Eeccccc-CCCceeEE--ecc-HH----hcc-cCCcccCCCCCcCHHHHHHHHHHHH
Confidence            33 2123444   5799999 59999999  654 55    444 2222222234555555555544443

>PRK06062 hypothetical protein; Provisional

Probab=98.60  E-value=9e-06  Score=80.32  Aligned_cols=224  Identities=13%  Similarity=0.052  Sum_probs=120.2

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+++ .+||+..|.-...-|+  -.|.+.+++.+.+....  ...| ......+|-+.+++..-.      .-+++.+ 
T Consensus        49 D~dG~-~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~~~~~~~-~~~~~~~lae~L~~~~p~------~~~~v~f-  117 (451)
T PRK06062         49 DYEGR-RYLDFSSQLVNTNIGH--QHPKVVAAIQEQAARLCTVAPAH-ANDARSEAARLIAERAPG------DLSKVFF-  117 (451)
T ss_pred             ECCCC-EEEEcccCHHhhcCCC--CCHHHHHHHHHHHHhcCCcCCcc-CCHHHHHHHHHHHHhCCC------CCCEEEE-
Confidence            33443 7888876642111222  23445555544443211  0112 222233444444443211      1258877 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCC-----------CeEEEecccCCC--CC--CC----
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARV-----------PWSEYRYYDPKT--VG--LD----  215 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~-----------~~~~v~~~~~~~--~~--~d----  215 (363)
                       +.+|++|.+.+..+.+.+....+|+...-+|.+...... ..|.           .+..++......  ++  -|    
T Consensus       118 -~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  196 (451)
T PRK06062        118 -TNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEEC  196 (451)
T ss_pred             -cCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHH
Confidence             999999999997665544333678888877866643221 1111           112222100000  10  12    


Q ss_pred             ---HHHHHHHHHcC-CCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH
Q 017967          216 ---FEGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (363)
Q Consensus       216 ---~~~l~~~l~~~-~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  290 (363)
                         ++.+++.+... +++...+++-.-+.--|.. .+.+-+++|.++|+++|+++|.||+..+|.-.+   ..+....+ 
T Consensus       197 ~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~a~~~~-  272 (451)
T PRK06062        197 ERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG---KWFAIEHF-  272 (451)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCc---HHHHHHhc-
Confidence               56777777542 2333444443333334555 467889999999999999999999998874321   12222222 


Q ss_pred             hcCCeEEEEEcCccccccccc-cceEEEEeeCChh
Q 017967          291 TRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSD  324 (363)
Q Consensus       291 ~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~  324 (363)
                      .-.+++   -.|+|.+| .|+ -+|.+  ++. ++
T Consensus       273 gv~PDi---~t~gK~lg-gG~~Pigav--~~~-~~  300 (451)
T PRK06062        273 GVVPDL---ITFAKGVN-SGYVPLGGV--AIS-EA  300 (451)
T ss_pred             CCCCCe---eeechhhh-cCCcCcEEE--EEc-HH
Confidence            222343   36799998 674 78888  665 55

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=98.59  E-value=4.6e-06  Score=85.31  Aligned_cols=191  Identities=13%  Similarity=0.048  Sum_probs=119.2

Q ss_pred             CCcch-HHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeE
Q 017967          124 PIEGL-AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWS  202 (363)
Q Consensus       124 ~~~G~-~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~  202 (363)
                      ...|. .+..+.+|+.+ +.      ..-.++  ++|+|+++..+  +...+.+||.|++..-++-.....+...|++++
T Consensus       192 ~~~G~i~eAe~~aA~~f-gA------d~tyfv--vNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PV  260 (713)
T PRK15399        192 DHTGPHLEAEEYIARTF-GA------EQSYIV--TNGTSTSNKIV--GMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPI  260 (713)
T ss_pred             CCChHHHHHHHHHHHHh-CC------CcEEEE--eCChHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeeE
Confidence            34454 45555666664 33      244444  89999998777  667788999999999999888888999999999


Q ss_pred             EEecccCCC----CCCCH-----HHHHHHHHcCCCC--cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeE-EEecC
Q 017967          203 EYRYYDPKT----VGLDF-----EGMIADIKAAPGG--SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP-FFDVA  270 (363)
Q Consensus       203 ~v~~~~~~~----~~~d~-----~~l~~~l~~~~~~--~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~i-i~De~  270 (363)
                      +++..- +.    .+++.     +.+++++.+.++.  ++.+++.+| +=-|.++..+++.++   |   |+.+ ++||+
T Consensus       261 Yl~P~~-n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~---~---g~~~ilvDEA  332 (713)
T PRK15399        261 WLKPTR-NALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQT---L---DVPSIHFDSA  332 (713)
T ss_pred             Eecccc-cccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHH---h---CCCEEEEecc
Confidence            985321 22    34455     8899999876532  245555555 345999987665554   4   5555 69999


Q ss_pred             CCCCc-CCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhh
Q 017967          271 YQGFA-SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL  336 (363)
Q Consensus       271 y~~~~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~  336 (363)
                      |.+.. |.+.-++..++......+.-++++.|..|.+  +|+.-+.++-+-. .-.-+++.+.+...
T Consensus       333 hgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL--~alTQaS~iHvk~-~vd~~~~n~a~~m~  396 (713)
T PRK15399        333 WVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKML--AAFSQASLIHIKG-EYDEETFNEAFMMH  396 (713)
T ss_pred             chhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccc--cccchheeeeecC-CCCHHHHHHHHHHH
Confidence            87653 3321111222211001234456789999988  4776666543322 22234455555443

>PRK12403 putative aminotransferase; Provisional

Probab=98.58  E-value=9.5e-06  Score=80.35  Aligned_cols=225  Identities=14%  Similarity=0.077  Sum_probs=116.1

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCC--CCCcchHHHHHHHHHHHhcCCCCcccCCcEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      ..+++ .+||+..|.-...-|+  -.|.+.+++.+.++.-. ...+  .......+|-+.+++++..      .-+++.+
T Consensus        50 D~dG~-~ylD~~~g~~~~~lGh--~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~------~~~~v~f  120 (460)
T PRK12403         50 DNDGK-RYLDGMSGLWCTNLGY--GRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPG------HYSHAIY  120 (460)
T ss_pred             eCCCC-EEEECchhHHhhcCCC--CCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCC------CcCEEEE
Confidence            33443 7888776642222233  23455555555543311 0011  1122233455555554311      1257877


Q ss_pred             EeccchhHHHHHHHHHHHHh-----CCCCE-EEEcCCCCcchHH-HHhhCCCC-----------eEEEecccC--CCCCC
Q 017967          155 VQGLSGTGSLRLAAALIERY-----FPGAK-VLISSPTWGNHKN-IFNDARVP-----------WSEYRYYDP--KTVGL  214 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~-----~~gd~-Vlv~~P~y~~~~~-~~~~~G~~-----------~~~v~~~~~--~~~~~  214 (363)
                        +.+|++|.+.+..+...+     .+++. |+...-+|.+... .+...|.+           +..+|....  ..+..
T Consensus       121 --~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  198 (460)
T PRK12403        121 --TNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGEL  198 (460)
T ss_pred             --eCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCC
Confidence              999999999987766544     13333 4444556655422 22222211           222321000  00011


Q ss_pred             --------CHHHHHHHHHc-CCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchh
Q 017967          215 --------DFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (363)
Q Consensus       215 --------d~~~l~~~l~~-~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~  284 (363)
                              +.+.+++.+.+ .++....+++-.-+.--|.. .+.+-+++|.++|++||+++|.||+..+|.-.+   ..+
T Consensus       199 ~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG---~~~  275 (460)
T PRK12403        199 TPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG---EWF  275 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---hhh
Confidence                    12456555532 22333344443334444654 467789999999999999999999998874322   122


Q ss_pred             HHHHHHhcCCeEEEEEcCccccccccc-cceEEEEeeCChh
Q 017967          285 SVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSD  324 (363)
Q Consensus       285 ~~~~~~~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~  324 (363)
                      ....+ .-.+++++   |+|.+| .|+ -+|.+  ++. ++
T Consensus       276 a~e~~-gv~PDiv~---~gK~lg-gG~~Piga~--v~~-~~  308 (460)
T PRK12403        276 AHEHF-GFEPDTLS---IAKGLT-SGYVPMGGL--VLS-KR  308 (460)
T ss_pred             hhhhc-CCCCCeEE---Eccccc-ccccceEEE--EEC-HH
Confidence            22222 22244443   899998 684 78888  665 55

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=98.57  E-value=1.9e-05  Score=78.24  Aligned_cols=218  Identities=14%  Similarity=0.092  Sum_probs=118.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .+||+. |.....-|+  -.|.|.+++.+.++.- ....+.......+|.+.+++++-.      ..+++.+  +.+|++
T Consensus        73 ~ylD~~-g~~~~~lGh--~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~------~~~~v~f--~~sGse  141 (459)
T PRK06082         73 KYMDFH-GNNVHQLGY--GHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGG------ELNRVLF--APGGTS  141 (459)
T ss_pred             EEEEcc-cHhhcccCC--CCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCC------CCCEEEE--CCCcHH
Confidence            688876 321111222  2345666655554321 101111223334455555544211      1257877  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HHhhCCC------------CeEEEecccCCC--CC-C------CHHHHH
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDARV------------PWSEYRYYDPKT--VG-L------DFEGMI  220 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~-~~~~~G~------------~~~~v~~~~~~~--~~-~------d~~~l~  220 (363)
                      |.+.+..+...+....+|+...-+|.+... .+...|.            .+..+|......  +. .      +++.++
T Consensus       142 Ave~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  221 (459)
T PRK06082        142 AIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLE  221 (459)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHH
Confidence            999997665555434788888888866532 2221111            122232100000  10 0      135577


Q ss_pred             HHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEE
Q 017967          221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (363)
Q Consensus       221 ~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  300 (363)
                      +.+... .....+++-..++-.+...+.+-+++|.++|+++|+++|.||+..+|.-.+   ..+....+ .-.+++++  
T Consensus       222 ~~i~~~-~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG---~~fa~e~~-gv~PDiv~--  294 (459)
T PRK06082        222 YVIEKE-GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTG---EWFTHQAY-GIEPDILC--  294 (459)
T ss_pred             HHHhcC-CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc---hhhHhHhh-CCCCCEEE--
Confidence            777642 234444443334444556778889999999999999999999988874322   12222222 22344443  


Q ss_pred             cCcccccccc-ccceEEEEeeCChh
Q 017967          301 SYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       301 S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                       |+|.+| .| +-+|.+  ++. ++
T Consensus       295 -~gKgl~-gG~~P~~av--~~~-~~  314 (459)
T PRK06082        295 -IGKGLG-GGLVPIAAM--ITK-DK  314 (459)
T ss_pred             -eccccc-CCCCcceEE--EEc-HH
Confidence             899998 67 478888  554 44

>PRK05965 hypothetical protein; Provisional

Probab=98.57  E-value=1.7e-05  Score=78.52  Aligned_cols=224  Identities=14%  Similarity=0.101  Sum_probs=123.0

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CC---CCCCCcchHHHHHHHHHHHhcCCCCcccCCcEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NK---EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~---~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~  153 (363)
                      +.+++ .+||+..|.....-|+-  .+.+.+++.+.++... ..   .| ......+|-+.+++.+    ..  .-+++.
T Consensus        42 D~dG~-~ylD~~~g~~~~~lGh~--~p~i~~Ai~~q~~~~~~~~~~~~~-~~~~~~~lae~L~~~~----p~--~~~~v~  111 (459)
T PRK05965         42 DASGH-QLLDAFAGLWCVNVGYG--QESIVEAAAEQMRELPYATGYFHF-GSEPAIRLAAKLAERA----PG--SLNHVY  111 (459)
T ss_pred             ECCCC-EEEECcccHHhccCCCC--CHHHHHHHHHHHHhcCCccccccc-CCHHHHHHHHHHHhhC----CC--CcCEEE
Confidence            34443 78888766432222222  3455555555543211 01   11 1122223444444432    11  135787


Q ss_pred             EEeccchhHHHHHHHHHHHHh----C-CC-CEEEEcCCCCcchHHHH-hh---------CCC---CeEEEecccC--CCC
Q 017967          154 TVQGLSGTGSLRLAAALIERY----F-PG-AKVLISSPTWGNHKNIF-ND---------ARV---PWSEYRYYDP--KTV  212 (363)
Q Consensus       154 ~~~t~ggt~al~l~~~l~~~~----~-~g-d~Vlv~~P~y~~~~~~~-~~---------~G~---~~~~v~~~~~--~~~  212 (363)
                      +  +.+|++|.+.+..+.+.+    . ++ .+|+...-+|.+..... ..         .|.   .+..++....  ..+
T Consensus       112 f--~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (459)
T PRK05965        112 F--TLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPV  189 (459)
T ss_pred             E--eCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCccccccc
Confidence            7  999999999997765554    1 33 57888888887664211 11         111   1122221100  001


Q ss_pred             CCC--------HHHHHHHHHcCC-CCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCc
Q 017967          213 GLD--------FEGMIADIKAAP-GGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (363)
Q Consensus       213 ~~d--------~~~l~~~l~~~~-~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~  282 (363)
                      +-|        ++.+++.+.... +....+++-.-+.-.|.. .+.+-+++|.++|++||+++|.||+..+|.-.+   .
T Consensus       190 ~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG---~  266 (459)
T PRK05965        190 GDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTG---P  266 (459)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCc---h
Confidence            123        256777776432 344455544445555664 577888999999999999999999999984332   1


Q ss_pred             hhHHHHHHhcCCeEEEEEcCccccccccc-cceEEEEeeCChh
Q 017967          283 ASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSD  324 (363)
Q Consensus       283 ~~~~~~~~~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~  324 (363)
                      .+....+ .-.+++++   |+|.++ .|+ -+|.+  ++. ++
T Consensus       267 ~~a~~~~-gv~PDiv~---~gKgl~-gG~~Pi~av--~~~-~~  301 (459)
T PRK05965        267 LFACEAE-GVVPDLMT---VAKGLT-SGYVPMGAV--LMS-DH  301 (459)
T ss_pred             hhhHhhc-CCCCCeEE---echhhc-cCCcceeEE--EEc-HH
Confidence            2222222 22344444   489998 784 89999  665 55

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=98.56  E-value=4.8e-06  Score=81.66  Aligned_cols=221  Identities=10%  Similarity=0.011  Sum_probs=117.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcc-hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEG-LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G-~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|.-...-|+  -.+.+.+++.+.++...   |....+ ..+.+..+|+.+......  .-+++.+  +.+|++
T Consensus        44 ~ylD~~~g~~~~~lGh--~~p~i~~Ai~~q~~~~~---~~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f--~~SGsE  114 (428)
T PRK07986         44 RLVDGMSSWWAAIHGY--NHPQLNAAMKSQIDAMS---HVMFGGITHPPAIELCRKLVAMTPQ--PLECVFL--ADSGSV  114 (428)
T ss_pred             EEEEcchhHHhhcCCC--CCHHHHHHHHHHHhhcC---CccccccCCHHHHHHHHHHHhhCCC--CcCEEEE--eCCcHH
Confidence            7888877642111222  23556666655543311   111100 112334444444332211  1257877  999999


Q ss_pred             HHHHHHHHHHHh-----CCCCEEEEcCCCCcchHHH-HhhCCC-------------CeEEEecccCC---CC-CCCHHHH
Q 017967          163 SLRLAAALIERY-----FPGAKVLISSPTWGNHKNI-FNDARV-------------PWSEYRYYDPK---TV-GLDFEGM  219 (363)
Q Consensus       163 al~l~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~-~~~~G~-------------~~~~v~~~~~~---~~-~~d~~~l  219 (363)
                      |.+.+..+...+     ....+|+...-+|.+.... +...|-             .+..++.....   .+ .-|++.+
T Consensus       115 Ave~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l  194 (428)
T PRK07986        115 AVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPF  194 (428)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHH
Confidence            999987765554     1236788888888664321 111110             11222210000   01 1256778


Q ss_pred             HHHHHcCCCCcEEEEEcC-CCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEE
Q 017967          220 IADIKAAPGGSFILLHGC-AHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (363)
Q Consensus       220 ~~~l~~~~~~~~~~~i~~-p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi  297 (363)
                      ++.+...+++...+++-. .+.-.|. ..+++-+++|.++|+++|+++|+||+..+|...+   ..+....+ .-.++++
T Consensus       195 ~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG---~~fa~~~~-gv~PDi~  270 (428)
T PRK07986        195 ARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG---KLFACEHA-GIAPDIL  270 (428)
T ss_pred             HHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC---Ceeeeccc-CCCCCEE
Confidence            887865444444444322 1344454 4467889999999999999999999987773221   11111111 2223444


Q ss_pred             EEEcCcccccccc-ccceEEEEeeCChh
Q 017967          298 VAQSYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       298 ~~~S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                         .|+|.++ .| +-+|.+  ++. ++
T Consensus       271 ---t~gK~l~-gG~~p~~av--~~~-~~  291 (428)
T PRK07986        271 ---CLGKALT-GGTMTLSAT--LTT-RE  291 (428)
T ss_pred             ---Eechhhh-CCcccCcch--hch-HH
Confidence               4899997 67 477777  554 55

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=98.53  E-value=3.5e-06  Score=83.07  Aligned_cols=187  Identities=18%  Similarity=0.116  Sum_probs=123.4

Q ss_pred             Ccc-hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEE
Q 017967          125 IEG-LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (363)
Q Consensus       125 ~~G-~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (363)
                      ..| ..+..+..|+.+ +.      ....++  ++|.++|+..+  +...+.+||.|+++..+.......+-..|+..++
T Consensus        68 p~G~i~eAqe~aA~~f-gA------d~tyFv--vNGTS~ank~v--i~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvy  136 (557)
T COG1982          68 PEGPIKEAQELAARVF-GA------DHTYFV--VNGTSTANKAV--INAVLTPGDKVLVDRNCHKSIHHGLILAGATPVY  136 (557)
T ss_pred             CCccHHHHHHHHHHHh-CC------CceEEE--ECCccHHHHHH--HHhhcCCCCEEEecCCccHHHHHHHHHcCCceEE
Confidence            344 345555666664 43      245555  89999998777  6777889999999999999888888899999888


Q ss_pred             EecccCC----CCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC--CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCC
Q 017967          204 YRYYDPK----TVGLDFEGMIADIKAAPGGSFILLHGCAHNPT--GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (363)
Q Consensus       204 v~~~~~~----~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT--G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~  277 (363)
                      +...-..    -.+++.+.|++++.+++...++.++   .|||  |++++.++   |++.+...+.++.+|++.. ..++
T Consensus       137 l~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vi---tnpTYdGv~~n~~~---i~~~~~~~~a~v~~deah~-~~~~  209 (557)
T COG1982         137 LEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVI---TNPTYDGVCYNLRK---IVELLHHYGAWVLYDEAHP-AHFD  209 (557)
T ss_pred             ecCCCCccccccCCCCHHHHHHHHHhChhhheeEEE---ecCccceEeecHHH---HHHHHhhcCceEEhhhcCc-cccc
Confidence            8532122    1578999999999887665244444   4676  98887655   5566888899999999943 3322


Q ss_pred             CCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC--hhHHHHHHHHHHhh
Q 017967          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS--SDLAARVKSQLKRL  336 (363)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~--~~~~~~~~~~l~~~  336 (363)
                      ..+  ..+.  .......+++..|..|.++  ++.-+-.+ -..+  .-..+++.+.+...
T Consensus       210 ~~~--~l~~--~~~~~~~~~~tqS~HK~l~--alSQaS~i-Hv~~~~~~~~~r~nea~~~h  263 (557)
T COG1982         210 FSP--MLPE--SALNGGADFVTQSTHKLLA--ALSQASMI-HVKDGRAVNHERFNEALMMH  263 (557)
T ss_pred             ccc--cCcc--hhhhcCceEEEechhhhhh--hhhhhHHH-hhCCCccCCHHHHHHHHHHH
Confidence            111  1111  1234578999999999885  55555441 2222  11234566655544

>PRK07046 aminotransferase; Validated

Probab=98.53  E-value=2.5e-05  Score=77.16  Aligned_cols=211  Identities=15%  Similarity=0.088  Sum_probs=120.8

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      +.+++ .+||+..|.-...-|+  -.+.+.+++.+.+.......+ +.....+|-+.+++..    +    .+++.+  +
T Consensus        71 D~DG~-~yiD~~~g~g~~~lGh--~~p~i~~Av~~q~~~~~~~~~-~~~~~~~lAe~l~~~~----~----~~~v~F--~  136 (453)
T PRK07046         71 DVDGH-RYDDFCLGDTGAMFGH--SPAPVARALAEQARRGLTTML-PSEDAAWVGEELARRF----G----LPYWQV--A  136 (453)
T ss_pred             eCCCC-EEEEecccccccccCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHHh----C----CCEEEE--E
Confidence            34444 7888876642111222  235666666665544322222 3333344555555442    1    368877  9


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-Hhh--C----------CC------CeEEEecccCCCCCCCHHH
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FND--A----------RV------PWSEYRYYDPKTVGLDFEG  218 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~-~~~--~----------G~------~~~~v~~~~~~~~~~d~~~  218 (363)
                      ++|++|.+.+.++.+.+...++|+...-+|.++... +..  .          |.      .+..+|      + -|++.
T Consensus       137 nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~-nd~~~  209 (453)
T PRK07046        137 TTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE------F-NDLAA  209 (453)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC------C-CCHHH
Confidence            999999999977665554447888888888776321 111  1          11      011111      1 27889


Q ss_pred             HHHHHHcCCCCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEE
Q 017967          219 MIADIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (363)
Q Consensus       219 l~~~l~~~~~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi  297 (363)
                      +++.+..  .....+++-.-+.-.|. ..+.+-++++-++|+++|+++|.||+.. |..+-.   .  .....+-.++++
T Consensus       210 l~~~l~~--~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~G---g--~~~~~gv~PDi~  281 (453)
T PRK07046        210 LEAALAD--GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPG---G--YTRAHGLEPDFL  281 (453)
T ss_pred             HHHHhCC--CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCc---c--hhHHhCCCccce
Confidence            9988852  33444443322222343 3455788999999999999999999975 433210   0  111112223444


Q ss_pred             EEEcCccccccccccceEEEEeeCChh
Q 017967          298 VAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       298 ~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                         .|+|.+| .|+-+|.+  ++. ++
T Consensus       282 ---t~gK~lg-gG~Pi~av--~g~-~~  301 (453)
T PRK07046        282 ---VVGKPIA-GGVPCAVY--GFS-AE  301 (453)
T ss_pred             ---eehhhhc-CCCcceee--eeh-HH
Confidence               4799998 79999988  554 55

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.53  E-value=6.9e-06  Score=80.75  Aligned_cols=213  Identities=17%  Similarity=0.148  Sum_probs=115.9

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      .+++ .+||+..|.-...-|+  -.+.+.+++.+.++......+ +.....+|-+.+++.+-.       .+++.+  +.
T Consensus        45 ~dG~-~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~la~~l~~~~p~-------~~~v~f--~~  111 (431)
T PRK06209         45 VDGN-EYIEYGMGLRAVGLGH--AYPPVVEAVREALQDGCNFTR-PSAIELDAAESFLELIDG-------ADMVKF--CK  111 (431)
T ss_pred             CCCC-EEEEccccccchhcCC--CCHHHHHHHHHHHHhCcCCCC-CCHHHHHHHHHHHHhCCc-------cceEEE--ec
Confidence            3443 7888876642222222  235566666555543221111 222223455566555311       257777  99


Q ss_pred             chhHHHHHHHHHHHHhCCCCEEEEc-CCCCcchHHHH-----hhCCCC--e--EEEecccCCCCCCCHHHHHHHHHcCCC
Q 017967          159 SGTGSLRLAAALIERYFPGAKVLIS-SPTWGNHKNIF-----NDARVP--W--SEYRYYDPKTVGLDFEGMIADIKAAPG  228 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~~gd~Vlv~-~P~y~~~~~~~-----~~~G~~--~--~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (363)
                      +|++|.+.+..+.+.+....+|+.. .=+|..+....     ...|..  .  ..+.+     ..-|++.+++.+...++
T Consensus       112 sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~d~~~l~~~l~~~~~  186 (431)
T PRK06209        112 NGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTF-----RYNDIASLEALFEDHPG  186 (431)
T ss_pred             CHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcccccc-----CCCCHHHHHHHHHhCCC
Confidence            9999999997665444322345443 11221111000     001110  0  01111     01278999998875433


Q ss_pred             CcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc
Q 017967          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (363)
Q Consensus       229 ~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l  308 (363)
                      +...++ ..|-  .|...+.+.+++|.++|+++|+++|+||+..++....     ........-.+++   ..|+|.+| 
T Consensus       187 ~~aavi-~Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-----~g~~~~~gv~PDi---~t~gK~lg-  254 (431)
T PRK06209        187 RIACVI-LEPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-----RGAQKLYGIVPDL---SCFGKALG-  254 (431)
T ss_pred             CEEEEE-Eccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-----chhhHHhCCCcce---eeehhhhc-
Confidence            343444 3442  3556778899999999999999999999987774321     1122111222333   56799998 


Q ss_pred             ccccceEEEEeeCChh
Q 017967          309 YAERIGAMNVVCSSSD  324 (363)
Q Consensus       309 ~G~RvG~i~~v~~~~~  324 (363)
                      .|+-+|++  ++. ++
T Consensus       255 gG~p~~av--~~~-~~  267 (431)
T PRK06209        255 NGFAVSAL--AGK-RE  267 (431)
T ss_pred             CCcccEEE--EEH-HH
Confidence            68888988  554 55

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=98.52  E-value=1.2e-05  Score=76.91  Aligned_cols=219  Identities=18%  Similarity=0.164  Sum_probs=137.1

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCc-chHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE-GLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~-G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      +.+.+ .+||+-.+.=..--|  .-.+.|.+++.+.+..+  ..|+.+. ..-++-+.+.+.+-.       -+.|-+  
T Consensus        49 DvDGn-~YIDy~~~~Gp~ilG--H~~p~V~~Av~~~l~~G--~~fg~Pte~Ei~~Aell~~~~p~-------~e~vrf--  114 (432)
T COG0001          49 DVDGN-EYIDYVLGWGPLILG--HAHPAVVEAVQEQLERG--LSFGAPTELEVELAELLIERVPS-------IEKVRF--  114 (432)
T ss_pred             eCCCC-EeeehhccCcccccC--CCCHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHhcCc-------ccEEEE--
Confidence            44554 788877664221222  23567888888877665  4465433 333444444444311       267766  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCC--CC-----------------eEEEecccCCCCCCCH
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR--VP-----------------WSEYRYYDPKTVGLDF  216 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G--~~-----------------~~~v~~~~~~~~~~d~  216 (363)
                      +++||+|...+.++.+-+..-|+|+..+=+|.++...+. ..|  ..                 ++.+|+       =|+
T Consensus       115 vnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y-------ND~  187 (432)
T COG0001         115 VNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY-------NDL  187 (432)
T ss_pred             ecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecC-------CCH
Confidence            999999988887766666566999999999988766543 332  11                 222222       279


Q ss_pred             HHHHHHHHcCCCCcEEEEE-cCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC
Q 017967          217 EGMIADIKAAPGGSFILLH-GCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i-~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  294 (363)
                      +.+++++++.++....+++ +-+.| -|. ...++-+++|-++|+++|.++|.||+--+|...-.     .......-.+
T Consensus       188 ~al~~~~~~~g~~IAaVIvEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~g-----Gaq~~~gi~P  261 (432)
T COG0001         188 EALEEAFEEYGDDIAAVIVEPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALG-----GAQGYYGVEP  261 (432)
T ss_pred             HHHHHHHHHcCCcEEEEEeccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCc-----ccccccCcCc
Confidence            9999999876544444443 33455 344 34556788899999999999999999888865410     0101111111


Q ss_pred             eEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHH
Q 017967          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLK  334 (363)
Q Consensus       295 ~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~  334 (363)
                      +   +..|.|..| .|+-+|.+   +...+    +.+++.
T Consensus       262 D---lttlGKiIG-GGlP~ga~---gGr~e----iM~~~~  290 (432)
T COG0001         262 D---LTTLGKIIG-GGLPIGAF---GGRAE----IMEQLA  290 (432)
T ss_pred             c---hhhhhhhhc-CCcceeee---ccHHH----HHhhhC
Confidence            2   456799999 89999999   55465    555444

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.52  E-value=1.1e-05  Score=84.96  Aligned_cols=177  Identities=11%  Similarity=0.068  Sum_probs=114.5

Q ss_pred             CCCCCC---cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh------CCCCEEEEcCCCCcch
Q 017967          120 KEYLPI---EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY------FPGAKVLISSPTWGNH  190 (363)
Q Consensus       120 ~~Y~~~---~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~------~~gd~Vlv~~P~y~~~  190 (363)
                      +-|.|.   +|..++...+.+++....|.+    ++. ++..||..+-.......+..      ...++|+++.-.+...
T Consensus       517 hPyqPe~~sqG~lq~i~elq~~l~eltGmd----~~S-l~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtn  591 (939)
T TIGR00461       517 HPFQPSNQVEGYQELIAQLEKWLCSITGFD----AIS-LQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTN  591 (939)
T ss_pred             CCCCchHHhHHHHHHHHHHHHHHHHHHCCC----Ccc-cCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcC
Confidence            445543   455555555555554444443    332 23455555433232122221      1225799999888777


Q ss_pred             HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecC
Q 017967          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (363)
Q Consensus       191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~  270 (363)
                      ...++..|++++.++++  .++.+|+++|++.+.++..+++++++.+|+| +|...+  ++++|.++|+++|..+++|.+
T Consensus       592 Pasa~~~G~~Vv~V~~d--~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgA  666 (939)
T TIGR00461       592 PASAAMAGMQVVPVNCD--QDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGA  666 (939)
T ss_pred             HHHHHHCCCEEEEeccC--CCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEec
Confidence            77789999999999984  4678999999999985434678888899999 887743  378888889999999999999


Q ss_pred             CCC-CcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc----cccccceEE
Q 017967          271 YQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLG----LYAERIGAM  316 (363)
Q Consensus       271 y~~-~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~----l~G~RvG~i  316 (363)
                      +.. ...-.    .+      ....-.++..|..|.|+    ..|--+|.+
T Consensus       667 q~~al~~l~----~P------g~~GaDi~~~s~HKtf~~P~G~GGPg~G~i  707 (939)
T TIGR00461       667 NMNAQVGLT----SP------GDLGADVCHLNLHKTFCIPHGGGGPGMGPI  707 (939)
T ss_pred             ChhhCCCCC----Cc------cccCCCEEEecCCccCCCCCCCCCCCeEEE
Confidence            743 22110    00      11133466777788554    345557888

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK13578 ornithine decarboxylase; Provisional

Probab=98.51  E-value=6.2e-06  Score=84.48  Aligned_cols=174  Identities=16%  Similarity=0.104  Sum_probs=111.4

Q ss_pred             CCcch-HHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCCCCe
Q 017967          124 PIEGL-AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDARVPW  201 (363)
Q Consensus       124 ~~~G~-~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~-~~~~G~~~  201 (363)
                      ...|. .+..+..|+.+ +.      ..-.++  ++|+|.++..+  +...+.+||.|++..-++-..... +...|+++
T Consensus       171 ~~eG~i~eAq~~AA~~f-gA------d~tyFl--vNGTS~gn~a~--i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~P  239 (720)
T PRK13578        171 IHEGAAKDAQKHAAKVF-NA------DKTYFV--LNGTSASNKVV--TNALLTPGDLVLFDRNNHKSNHHGALIQAGATP  239 (720)
T ss_pred             CCChHHHHHHHHHHHHh-CC------CceEEE--eCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHHcCCeE
Confidence            44454 45555555654 43      244545  89999998777  677788999999999999888774 88999999


Q ss_pred             EEEecccCCC----CCCCHHH-----HHHHHHcC-CC------CcEEEEEcCCCCCCCCCCCHHHHHHHHHH-HHhcCCe
Q 017967          202 SEYRYYDPKT----VGLDFEG-----MIADIKAA-PG------GSFILLHGCAHNPTGIDPTPEQWEKIADV-IQEKNHI  264 (363)
Q Consensus       202 ~~v~~~~~~~----~~~d~~~-----l~~~l~~~-~~------~~~~~~i~~p~NPTG~~~s~~~~~~i~~~-~~~~~~~  264 (363)
                      +++.-.- +.    .+++.+.     +++++.+. ++      +.+++++.+|+ =-|.++..+   +|+++ ++.++ .
T Consensus       240 VYl~P~~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~---~I~~~~~h~~~-~  313 (720)
T PRK13578        240 VYLETAR-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNAR---QVVDKIGHLCD-Y  313 (720)
T ss_pred             EEeeccc-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHH---HHHHHhhccCC-c
Confidence            9986321 22    3446544     88888775 22      13555554432 249998764   55555 56777 9


Q ss_pred             EEEecCCCCCc-CCCCCCchhHH-HHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          265 PFFDVAYQGFA-SGSLDNDASSV-RLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       265 ii~De~y~~~~-~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      |++||+|.+.. |.+.-++.+.. ......+..++++.|..|.++  ++--+.+
T Consensus       314 llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~--alTQaS~  365 (720)
T PRK13578        314 ILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA--GFSQTSQ  365 (720)
T ss_pred             EEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcch--hhhhHhh
Confidence            99999986553 33210112111 111112356899999999884  6666655

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.51  E-value=2e-05  Score=77.37  Aligned_cols=218  Identities=9%  Similarity=-0.014  Sum_probs=117.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.-...-|+  -.+.+.+++.+.++...  ...+.......++-+.+++....      .-+++.+  +.+|+
T Consensus        46 ~ylD~~~g~~~~~lGh--~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~------~~~~v~f--~~sGs  115 (427)
T TIGR00508        46 RLIDGMSSWWAAIHGY--NHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPN------ALDCVFL--ADSGS  115 (427)
T ss_pred             EEEEccchHHHhcCCC--CCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCC------CCCEEEE--eCCcH
Confidence            6888877641111122  23455555555443211  01111222334455555554211      1257877  99999


Q ss_pred             HHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHHh-hCCCC-------------eEEEecccCCCCC-----CCH
Q 017967          162 GSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFN-DARVP-------------WSEYRYYDPKTVG-----LDF  216 (363)
Q Consensus       162 ~al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~~~~-~~G~~-------------~~~v~~~~~~~~~-----~d~  216 (363)
                      +|.+.+..+.....     +| .+|+...-+|.+....+. ..|-.             +..++.. ...+.     -|+
T Consensus       116 eA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~  194 (427)
T TIGR00508       116 VAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEEAI  194 (427)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHHHHH
Confidence            99998866544331     33 578888888876543222 11210             1111110 00011     145


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCC--CCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC
Q 017967          217 EGMIADIKAAPGGSFILLHGCA--HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i~~p--~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~  293 (363)
                      +.+++.+....++...++ ..|  ++--|. ..+.+.+++|.++|+++|+++|+||++.++...+   ..+.... .+-.
T Consensus       195 ~~l~~~l~~~~~~vaavi-vEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G---~~~~~~~-~~v~  269 (427)
T TIGR00508       195 TPLAKLMELHSDEIAAVI-LEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTG---KLFACEH-AGVV  269 (427)
T ss_pred             HHHHHHHHhcCCcEEEEE-EechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC---ccchhhh-cCCC
Confidence            677777764333343444 444  444455 4478999999999999999999999987774432   1112211 1222


Q ss_pred             CeEEEEEcCccccccccc-cceEEEEeeCChh
Q 017967          294 MELLVAQSYSKNLGLYAE-RIGAMNVVCSSSD  324 (363)
Q Consensus       294 ~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~  324 (363)
                      +++++   ++|.++ .|+ =++.+  +. +++
T Consensus       270 pDi~~---~gK~l~-gG~~p~~a~--~~-~~~  294 (427)
T TIGR00508       270 PDILC---VGKALT-GGYMTLSAT--VT-TDK  294 (427)
T ss_pred             CCEEE---echhhh-cCcccceEE--EE-cHH
Confidence            34443   799996 675 45655  44 466

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.51  E-value=2.2e-05  Score=77.59  Aligned_cols=219  Identities=9%  Similarity=-0.050  Sum_probs=120.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC-C--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-E--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      .+||+..|.-...-|+  -.+.+.+++.+.++.. .  ...+ ..    +....+|+.+....+.  .-+++.+  +.+|
T Consensus        55 ~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~~~~~~~~~~-~~----~~~~~lAe~L~~~~p~--~~~~v~f--~~sG  123 (453)
T PRK06943         55 RYLDAISSWWVNLFGH--ANPRINAALKDQLDTLEHAMLAGC-TH----EPAIELAERLAALTGG--TLGHAFF--ASDG  123 (453)
T ss_pred             EEEEcchHHHHhcCCC--CCHHHHHHHHHHHHhcCCcccccc-CC----HHHHHHHHHHHHhCCC--CCCEEEE--eCCC
Confidence            7888876642111222  2345555555544321 1  0112 22    2333444444332211  1247877  9999


Q ss_pred             hHHHHHHHHHHHHh----C-CC-CEEEEcCCCCcchHH-HHhhCC------------CCeEEEecccCCC--CC------
Q 017967          161 TGSLRLAAALIERY----F-PG-AKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKT--VG------  213 (363)
Q Consensus       161 t~al~l~~~l~~~~----~-~g-d~Vlv~~P~y~~~~~-~~~~~G------------~~~~~v~~~~~~~--~~------  213 (363)
                      ++|.+.+..+....    . +| .+|+...-+|.+... .+...|            ..+..++..+...  .+      
T Consensus       124 seAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  203 (453)
T PRK06943        124 ASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADV  203 (453)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHH
Confidence            99999986654332    1 23 578888888866532 111111            0122233211000  00      


Q ss_pred             --CCHHHHHHHHHcCCCCcEEEEEcC-CCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH
Q 017967          214 --LDFEGMIADIKAAPGGSFILLHGC-AHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (363)
Q Consensus       214 --~d~~~l~~~l~~~~~~~~~~~i~~-p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  289 (363)
                        -+++.+++.+...++....+++-. .+.-.|. ..+.+-++++-++|++||+++|.||+..+|.-.+   ..+....+
T Consensus       204 ~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG---~~fa~~~~  280 (453)
T PRK06943        204 AARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG---TFFACEQA  280 (453)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCc---chhHHHhC
Confidence              124677777764444444554433 2555566 4678899999999999999999999999884332   12232222


Q ss_pred             HhcCCeEEEEEcCcccccccc-ccceEEEEeeCChh
Q 017967          290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       290 ~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                       .-.++++++   +|.++ .| +-+|.+  ++. ++
T Consensus       281 -gv~PDivt~---gKgl~-gG~~Pi~av--~~~-~e  308 (453)
T PRK06943        281 -GVWPDFLCL---SKGIS-GGYLPLSLV--LSR-DA  308 (453)
T ss_pred             -CCCCCeEee---ehhhc-cCcccceEE--EEc-HH
Confidence             333455544   89998 78 489988  664 55

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.50  E-value=3e-05  Score=76.93  Aligned_cols=218  Identities=10%  Similarity=0.043  Sum_probs=119.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CC--CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-EN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      .++|+..|.-...-|+.  .+.+.+++.+.+... ..  ..| ......+|-+.+++..    .  ...+++.+  +.+|
T Consensus        48 ~ylD~~~g~~~~~lGh~--~p~v~~Ai~~ql~~l~~~~~~~~-~~~~~~~lae~L~~~~----p--~~~~~v~f--~~sG  116 (466)
T PRK07030         48 RYLDAVSSWWVNVFGHA--NPRINQRIKDQVDQLEHVILAGF-SHEPVIELSERLVKIT----P--PGLSRCFY--ADNG  116 (466)
T ss_pred             EEEEcchhHHhhcCCCC--CHHHHHHHHHHHHhcCCcccccc-CCHHHHHHHHHHHHhC----C--CCcCEEEE--eCCc
Confidence            78888766421112222  345555555544321 10  112 1222234444444432    1  11257877  9999


Q ss_pred             hHHHHHHHHHHHHh----C-CC-CEEEEcCCCCcchHHH-HhhCCC------------CeEEEecccCC--CCCC-----
Q 017967          161 TGSLRLAAALIERY----F-PG-AKVLISSPTWGNHKNI-FNDARV------------PWSEYRYYDPK--TVGL-----  214 (363)
Q Consensus       161 t~al~l~~~l~~~~----~-~g-d~Vlv~~P~y~~~~~~-~~~~G~------------~~~~v~~~~~~--~~~~-----  214 (363)
                      ++|.+.+..+...+    . +| .+|+...-+|.+.... +...|.            .+..+|..+..  ..+.     
T Consensus       117 sEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~  196 (466)
T PRK07030        117 SSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEH  196 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHH
Confidence            99999987665443    1 23 5688888888665322 211111            12223321000  0111     


Q ss_pred             ---CHHHHHHHHHcCCCCcEEEEEcCC--CCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH
Q 017967          215 ---DFEGMIADIKAAPGGSFILLHGCA--HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (363)
Q Consensus       215 ---d~~~l~~~l~~~~~~~~~~~i~~p--~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  288 (363)
                         +++.+++.+...++....++ ..|  +.-.|. ..+.+-+++|.++|+++|+++|.||+..+|.-.+   ..+....
T Consensus       197 ~~~~l~~le~~~~~~~~~iAAvi-~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG---~~~a~~~  272 (466)
T PRK07030        197 SRRMFAHMEQTLAEHHDEIAAVI-VEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG---TMFACEQ  272 (466)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEE-EecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccc---cchHHHh
Confidence               24566777764444444444 344  444465 4567889999999999999999999998885332   1222222


Q ss_pred             HHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChh
Q 017967          289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       289 ~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                      + .-.++++++   +|.++ .| +-+|.+  ++. ++
T Consensus       273 ~-gv~PDiv~~---gKgl~-gG~~Pi~av--~~~-~e  301 (466)
T PRK07030        273 A-GIRPDFLCL---SKALT-GGYLPLAAV--LTT-DT  301 (466)
T ss_pred             c-CCCCCEEee---ehhcc-CCcccceEE--Eec-HH
Confidence            2 333455544   89998 78 489988  654 66

>PRK07678 aminotransferase; Validated

Probab=98.50  E-value=3.3e-05  Score=76.39  Aligned_cols=223  Identities=12%  Similarity=0.046  Sum_probs=119.3

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCC--CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+.+ .+||+..|.-...-|+  -.+.+.+++.+.++....  ..| ...-..+|-+.+++.+    ..   .+++.+ 
T Consensus        43 D~dG~-~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~~~~-~~~~~~~lae~l~~~~----~~---~~~v~f-  110 (451)
T PRK07678         43 DIQGN-RYLDGMSGLWCVNVGY--GRKELAEAAYEQLKTLSYFPLTQ-SHEPAIKLAEKLNEWL----GG---EYVIFF-  110 (451)
T ss_pred             eCCCC-EEEEccccHHhhcCCC--CCHHHHHHHHHHHHhcCcccccc-CCHHHHHHHHHHHHhC----CC---CCEEEE-
Confidence            33443 7888876642222222  234555555554432110  112 1122234444444442    11   247777 


Q ss_pred             eccchhHHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHHh-hCCC------------CeEEEecccCCC--CC-
Q 017967          156 QGLSGTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPKT--VG-  213 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~~~--~~-  213 (363)
                       +++|++|.+.+..+...+.     +| .+|+...-+|.+....+. ..|.            .+..+|..+...  ++ 
T Consensus       111 -~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (451)
T PRK07678        111 -SNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIE  189 (451)
T ss_pred             -eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccC
Confidence             9999999999877655442     23 578888877866543221 1111            122232211000  00 


Q ss_pred             ----CC---HHHHHHHHH-cCCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchh
Q 017967          214 ----LD---FEGMIADIK-AAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (363)
Q Consensus       214 ----~d---~~~l~~~l~-~~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~  284 (363)
                          .+   .+.+++.+. ..+++...+++-.-+.--|.. .+.+-++++.++|++||+++|.||+..+|.-.+   ..+
T Consensus       190 ~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~  266 (451)
T PRK07678        190 SEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTG---KAF  266 (451)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCc---hhH
Confidence                01   223555564 223344455543333334555 567889999999999999999999998884322   122


Q ss_pred             HHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChh
Q 017967          285 SVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       285 ~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                      ....+ .-.++++   .|+|.+| .| +-+|.+  ++. ++
T Consensus       267 ~~~~~-gv~PDiv---t~gK~lg-gG~~Pi~av--~~~-~~  299 (451)
T PRK07678        267 GFMNY-GVKPDII---TMAKGIT-SAYLPLSAT--AVK-KE  299 (451)
T ss_pred             HHHhc-CCCCCEE---Eeecccc-cCCcceeEE--EEc-HH
Confidence            22222 2224444   5699998 67 688988  665 66

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.49  E-value=2.7e-05  Score=76.47  Aligned_cols=218  Identities=11%  Similarity=0.031  Sum_probs=118.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCC--CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.-...-|+-  .+.+.+++.+.++....  ..+.......+|-+.+++.+-      ..-+++.+  +.+|+
T Consensus        45 ~ylD~~~g~~~~~lGh~--~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p------~~~~~v~f--~~sGs  114 (429)
T PRK06173         45 RLIDGMSSWWAALHGYN--HPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILP------PSLNKIFF--ADSGS  114 (429)
T ss_pred             EEEEccchHHhccCCCC--CHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCC------CCcCEEEE--eCCch
Confidence            78888766421111222  34555555554432110  111122333445555554421      11358877  99999


Q ss_pred             HHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHH-HHhhCC------------C-CeEEEecccCCCCC-----CCH
Q 017967          162 GSLRLAAALIERYF-----PG-AKVLISSPTWGNHKN-IFNDAR------------V-PWSEYRYYDPKTVG-----LDF  216 (363)
Q Consensus       162 ~al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~-~~~~~G------------~-~~~~v~~~~~~~~~-----~d~  216 (363)
                      +|.+.+..+...+.     +| .+|+...-+|.+... .+...|            . .+..+|.... .++     -++
T Consensus       115 eAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~l  193 (429)
T PRK06173        115 VAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSI-KFGEEWNDEAI  193 (429)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCc-ccchhHHHHHH
Confidence            99999876655441     33 568888888866421 111111            0 1122222100 010     135


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCC--CCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC
Q 017967          217 EGMIADIKAAPGGSFILLHGCA--HNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i~~p--~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~  293 (363)
                      +.+++.+...+++...+++ .|  +.-.|.. .+++-+++|.++|++||+++|+||+..+|...+   ..+....+ +-.
T Consensus       194 ~~l~~~i~~~~~~iAAvi~-EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG---~~~a~~~~-gv~  268 (429)
T PRK06173        194 EPLQDLLEQKGDEIAALIL-EPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTG---KLFALEHA-GVV  268 (429)
T ss_pred             HHHHHHHHhCCCcEEEEEE-cchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCC---cchHHHhc-CCC
Confidence            6677777644444545554 44  5656665 688999999999999999999999987764322   12222222 222


Q ss_pred             CeEEEEEcCccccccccc-cceEEEEeeCChh
Q 017967          294 MELLVAQSYSKNLGLYAE-RIGAMNVVCSSSD  324 (363)
Q Consensus       294 ~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~  324 (363)
                      +++++   |+|.++ .|+ =+|.+  +.. ++
T Consensus       269 PDiv~---~gK~l~-gG~~p~~a~--~~~-~~  293 (429)
T PRK06173        269 PDIMC---IGKALT-GGYLTLSAT--ITT-EA  293 (429)
T ss_pred             CCEEE---eehhhh-CCccccceE--Eec-HH
Confidence            34443   899997 674 56666  544 55

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=98.49  E-value=2.6e-05  Score=76.83  Aligned_cols=162  Identities=13%  Similarity=0.108  Sum_probs=94.8

Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHH-HhhC---------C---CCeEEEeccc--
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNI-FNDA---------R---VPWSEYRYYD--  208 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~~-~~~~---------G---~~~~~v~~~~--  208 (363)
                      +++.+  +.+|++|.+.+..+...+.     +| .+|+...-+|.+.... +...         +   ..+..+|...  
T Consensus       107 ~~v~f--~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~  184 (442)
T PRK13360        107 NHVFF--TNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDL  184 (442)
T ss_pred             CEEEE--eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchh
Confidence            57877  9999999999876655442     22 5788888888665321 1111         1   1122233210  


Q ss_pred             -CCCCCC--------CHHHHHHHHHcC-CCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCC
Q 017967          209 -PKTVGL--------DFEGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (363)
Q Consensus       209 -~~~~~~--------d~~~l~~~l~~~-~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~  277 (363)
                       ...+..        ..+.+++.+... +++...+++-.-+--.|.. .+.+-+++|.++|+++|+++|+||+..+|.-.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~Grt  264 (442)
T PRK13360        185 ARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRL  264 (442)
T ss_pred             hccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC
Confidence             000111        145777777643 2334444444334445655 46778899999999999999999998888432


Q ss_pred             CCCCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChh
Q 017967          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                      +   .......+ .-.+++   -.|+|.++ .| +-+|.+  ++. ++
T Consensus       265 G---~~~a~~~~-gv~PDi---vt~gK~l~-gG~~P~gav--~~~-~~  301 (442)
T PRK13360        265 G---APFAAQYF-GVTPDL---LTCAKGLT-NGAIPMGAV--FVS-SE  301 (442)
T ss_pred             c---cchhhhhc-CCCCce---eeeeeccc-cCccceEEE--EEc-HH
Confidence            2   11222111 222333   37799997 56 678888  665 55

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.47  E-value=1.8e-06  Score=82.20  Aligned_cols=249  Identities=14%  Similarity=0.080  Sum_probs=128.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC-CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|.-...-|+  -.+.+.+++.+.....   .|.. .....+...++++.+....+.  .-+++.+  +.+|++
T Consensus        17 ~~lD~~~~~~~~~lGh--~~p~i~~ai~~~~~~~---~~~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f--~~sGse   87 (339)
T PF00202_consen   17 EYLDFMSGYGSVNLGH--NHPEIAEAIAEQANKL---NYVSFSGFTHPEAAELAEKLAELFPG--GLDRVFF--ANSGSE   87 (339)
T ss_dssp             EEEESSHHHHTTTT-B--T-HHHHHHHHHHHHHC---SSCSTTTSEEHHHHHHHHHHHHHSST--TEEEEEE--ESSHHH
T ss_pred             EEEECCCCccceecCC--CccccchhHHHHhhhc---ccccccceeccchhhhhhhhhhcccc--ccceeee--ccCchH
Confidence            6888876642222222  3456666666655432   1211 111223334444444332211  2468877  999999


Q ss_pred             HHHHHHHHHH------HhCCCCEEEEcCCCCcchHH-HHh------------hCCCCeEEEecccCCC---CCCCHHHHH
Q 017967          163 SLRLAAALIE------RYFPGAKVLISSPTWGNHKN-IFN------------DARVPWSEYRYYDPKT---VGLDFEGMI  220 (363)
Q Consensus       163 al~l~~~l~~------~~~~gd~Vlv~~P~y~~~~~-~~~------------~~G~~~~~v~~~~~~~---~~~d~~~l~  220 (363)
                      |++.+..+..      ....-.+|+...-+|.+... .+.            .....+..+|..+...   ..-..+.++
T Consensus        88 Ave~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  167 (339)
T PF00202_consen   88 AVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALE  167 (339)
T ss_dssp             HHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHH
Confidence            9999977655      22233789988888865432 111            1112345566521100   000111233


Q ss_pred             HHHHc-CCCCcEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEE
Q 017967          221 ADIKA-APGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (363)
Q Consensus       221 ~~l~~-~~~~~~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~  298 (363)
                      +.+.+ ..+....+++-.-+.-.|... +.+-+++|.++|+++|+++|.||+..+|.-.+.   ...... ..-.+++++
T Consensus       168 ~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~---~~a~~~-~gv~PDiv~  243 (339)
T PF00202_consen  168 ELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK---FFASEH-YGVDPDIVT  243 (339)
T ss_dssp             HHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS---SSGHHH-HTSSSSEEE
T ss_pred             HHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCC---ccceec-ccccCcccc
Confidence            33222 123333444333333345444 567789999999999999999999999943321   223332 344455554


Q ss_pred             EEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccc
Q 017967          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       299 ~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                      +   +|.++ .|+-+|.+  ++. ++    +.+.+..........-++++..++...|
T Consensus       244 ~---gK~l~-gG~p~sav--~~~-~~----i~~~~~~~~~~~T~~g~p~~~aaa~~~l  290 (339)
T PF00202_consen  244 F---GKGLG-GGLPISAV--LGS-EE----IMEAFQPGSHGSTFGGNPLSCAAALATL  290 (339)
T ss_dssp             E---EGGGG-TTSSEEEE--EEE-HH----HHTTSCTTSSTCTTTT-HHHHHHHHHHH
T ss_pred             c---ccchh-hhhhcccc--ccc-ch----hhccccccccccccccchHhhhhhhhHH
Confidence            4   59998 78999999  665 55    4444432222233344555555554443

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.45  E-value=3.2e-05  Score=76.63  Aligned_cols=219  Identities=11%  Similarity=0.035  Sum_probs=120.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CCCC-CCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKE-YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~-Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .+||+..|.-...-|+  -.+.+.+++.+.++.- .... +.......+|-+.+++.+    ..  .-+++.+  +++|+
T Consensus        57 ~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~----p~--~~~~v~f--~~SGs  126 (460)
T PRK06916         57 EYYDGVSSIWLNVHGH--QVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVV----PE--GLKKVFY--SDSGA  126 (460)
T ss_pred             EEEEcchhHHHhhcCC--CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhC----CC--CCCEEEE--eCCcH
Confidence            7888866542111122  2345555555444321 0011 112222334444554442    11  1257877  99999


Q ss_pred             HHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHHHH-hhCC------------CCeEEEecccCC--CCC-------
Q 017967          162 GSLRLAAALIERY-----FPG-AKVLISSPTWGNHKNIF-NDAR------------VPWSEYRYYDPK--TVG-------  213 (363)
Q Consensus       162 ~al~l~~~l~~~~-----~~g-d~Vlv~~P~y~~~~~~~-~~~G------------~~~~~v~~~~~~--~~~-------  213 (363)
                      +|.+.+..+.+.+     .+| .+|+...-+|.+....+ ...|            ..+..+|..+..  .++       
T Consensus       127 eAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~  206 (460)
T PRK06916        127 TAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIV  206 (460)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHH
Confidence            9999987765543     233 57888888886653322 1111            112223221000  011       


Q ss_pred             -CCHHHHHHHHHcCCCCcEEEEEcCC--CCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH
Q 017967          214 -LDFEGMIADIKAAPGGSFILLHGCA--HNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (363)
Q Consensus       214 -~d~~~l~~~l~~~~~~~~~~~i~~p--~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  289 (363)
                       -+++.+++.+...++....+++ .|  +.-.|.. .+.+-+++|.++|+++|+++|.||+..+|.-.+   ..+....+
T Consensus       207 ~~~~~~l~~~l~~~~~~iAAvi~-EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG---~~~a~~~~  282 (460)
T PRK06916        207 KKHLEELEELLKEKHEEIAAIIV-EPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTG---KMFACEHE  282 (460)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEE-eccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCc---hhhHHHhc
Confidence             1356677777644444444443 44  5555665 588899999999999999999999998874322   12222222


Q ss_pred             HhcCCeEEEEEcCcccccccc-ccceEEEEeeCChh
Q 017967          290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       290 ~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                       .-.++++   .|+|.++ .| +-+|.+  ++. ++
T Consensus       283 -gv~PDiv---~~gK~l~-gG~~Pi~av--~~~-~e  310 (460)
T PRK06916        283 -NVTPDIM---TAGKGLT-GGYLPIAIT--VTT-DE  310 (460)
T ss_pred             -CCCCCee---eeehhhh-cCcccccee--eec-HH
Confidence             2224444   4699998 78 488988  665 55

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.42  E-value=6.3e-05  Score=74.66  Aligned_cols=161  Identities=14%  Similarity=0.106  Sum_probs=98.6

Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHHh-hCCC------------CeEEEecccCC
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDPK  210 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~~  210 (363)
                      +++.+  +.+|++|.+.+..+...+.     +| .+|+...-+|.+...... ..|.            .+..+|..+..
T Consensus       130 ~~v~f--~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~  207 (472)
T PRK08742        130 SKVFY--ADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAY  207 (472)
T ss_pred             CEEEE--eCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCcc
Confidence            57877  9999999999977665541     33 578888888866543221 1111            12223321100


Q ss_pred             --CCCC--------CHHHHHHHHHcCCCCcEEEEEcCC--CCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCC
Q 017967          211 --TVGL--------DFEGMIADIKAAPGGSFILLHGCA--HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (363)
Q Consensus       211 --~~~~--------d~~~l~~~l~~~~~~~~~~~i~~p--~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~  277 (363)
                        ..+.        +++.+++.+...++....++ ..|  +.-.|. ..+.+-++++.++|+++|+++|.||+..+|...
T Consensus       208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI-~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRt  286 (472)
T PRK08742        208 LAEPGQSAEDYALQAADALQALFEQSPGEICALI-LEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRT  286 (472)
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEE-EccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC
Confidence              0111        25667777754334444444 455  555676 567888999999999999999999999988543


Q ss_pred             CCCCchhHHHHHHhcCCeEEEEEcCccccccccc-cceEEEEeeCChh
Q 017967          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSD  324 (363)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~  324 (363)
                      +   ..+....+ +-.++++++   +|.++ .|+ -+|.+  ++. ++
T Consensus       287 G---~~~a~e~~-gv~PDiv~~---gKgl~-gG~~Plaav--~~~-~e  323 (472)
T PRK08742        287 G---TLFACEQA-GVMPDLLCL---SKGLT-GGFLPLSAV--LAT-QQ  323 (472)
T ss_pred             c---cchHHHhc-CCCCCEEEE---ccccc-CCCCCccee--ecc-HH
Confidence            2   12222222 333455544   89997 684 78888  554 66

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.41  E-value=6.6e-05  Score=74.43  Aligned_cols=155  Identities=14%  Similarity=0.065  Sum_probs=91.8

Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCC----------C--CeEEEecccCCC--CC--------
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR----------V--PWSEYRYYDPKT--VG--------  213 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G----------~--~~~~v~~~~~~~--~~--------  213 (363)
                      +++|++|.+.+..+.+......+|+...-+|.+...... ..|          .  .+..+|......  ++        
T Consensus       133 ~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  212 (464)
T PRK06938        133 GPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVR  212 (464)
T ss_pred             CCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHH
Confidence            369999999997765544333678888877866543221 111          0  123333211100  11        


Q ss_pred             CCHHHHHHHHHcCC---CCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH
Q 017967          214 LDFEGMIADIKAAP---GGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (363)
Q Consensus       214 ~d~~~l~~~l~~~~---~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  289 (363)
                      .+++.+++.+.+..   +....+++-.-+---|.+ .+.+-++++-++|+++|+++|.||+..+|.-.+   ..+.... 
T Consensus       213 ~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG---~~~a~e~-  288 (464)
T PRK06938        213 ANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG---KMFAFEH-  288 (464)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc---HHHHHHh-
Confidence            13567777776421   123444433223333554 568999999999999999999999999884322   1222222 


Q ss_pred             HhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       290 ~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      .+-.++++++   +|.+| .|+-+|.+  ++.
T Consensus       289 ~gv~PDiv~~---gKglg-gG~PlsAv--~~~  314 (464)
T PRK06938        289 AGIIPDVVVL---SKAIG-GSLPLAVV--VYR  314 (464)
T ss_pred             cCCCCCEEEe---ecccc-CCCceEEE--eeh
Confidence            2333455544   89998 78999999  654

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.40  E-value=8.5e-06  Score=78.30  Aligned_cols=205  Identities=22%  Similarity=0.256  Sum_probs=109.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCC-----CC-Ccc---hHHHHHHHHHHHhcCCCCcccCCcEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY-----LP-IEG---LAAFNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y-----~~-~~G---~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      ..|+|-..++       ++.+.+++++...+......+|     .. ..-   ++.+....+.-+++..   -+.+. +-
T Consensus        21 ~~l~LiaSEN-------~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~---~~~w~-an   89 (399)
T PF00464_consen   21 STLNLIASEN-------YMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAE---PKEWY-AN   89 (399)
T ss_dssp             HSEE-CTT------------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-S---TTTEE-EE
T ss_pred             cCccccCccc-------ccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCC---cccce-EE
Confidence            5788876553       2466777776554432221222     11 111   2333333344444432   11122 33


Q ss_pred             EeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HH-------hhCCCCeEEEecccCCCCCCCHHHHHHHHH
Q 017967          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IF-------NDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~---~~-------~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (363)
                      ++..+|+.|...+  +.+++.|||+|+..++...++..   ..       .....+.+.|+++ ++++.+|.+++++.+.
T Consensus        90 vqp~SGs~An~av--~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d-~~~~~ID~d~l~~~a~  166 (399)
T PF00464_consen   90 VQPHSGSQANLAV--YMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVD-PDTGLIDYDELEKLAK  166 (399)
T ss_dssp             ---SSHHHHHHHH--HHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB--TTTSSB-HHHHHHHHH
T ss_pred             eecCCchHHHHHH--HHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeee-cCCCeECHHHHHHHHh
Confidence            4678889887776  67778899999999988766642   11       1133567888885 3578999999999888


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC-CCcCCCCCCchhHHHHHHhcCCeEEEEEcCc
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  303 (363)
                      +.  +++++++..-..|-     .-+++++.++|.+.|.+++.|-+.. ++.-++.-++  ++    +.  --++..|..
T Consensus       167 ~~--kPklIi~G~S~y~~-----~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~--P~----~~--ADvvt~sTh  231 (399)
T PF00464_consen  167 EH--KPKLIICGASSYPR-----PIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPN--PF----PY--ADVVTGSTH  231 (399)
T ss_dssp             HH----SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS----GC----CT--SSEEEEESS
T ss_pred             hc--CCCEEEECchhccC-----ccCHHHHHHHHHhcCcEEEecccccccceehheecC--cc----cc--ceEEEeecc
Confidence            63  34566655544442     3467777888999999999999962 3322221111  11    11  237788999


Q ss_pred             cccccccccceEEEEeeC
Q 017967          304 KNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       304 K~~~l~G~RvG~i~~v~~  321 (363)
                      |+|  +|=|-|.|  .+.
T Consensus       232 Ktl--~GPrggiI--~~~  245 (399)
T PF00464_consen  232 KTL--RGPRGGII--LTN  245 (399)
T ss_dssp             GGG---SSS-EEE--EES
T ss_pred             ccc--cccCceEE--EEc
Confidence            998  58899998  665

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK07481 hypothetical protein; Provisional

Probab=98.40  E-value=7.3e-05  Score=73.90  Aligned_cols=221  Identities=15%  Similarity=0.091  Sum_probs=115.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCC-CC--CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK-EY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      .++|+..|.-...-|+  -.+.+.+++.+.++..... .+  ...    +.+..+|+.+....++ -.-+++.+  +.+|
T Consensus        43 ~ylD~~~g~~~~~lGh--~~p~v~~Ai~~ql~~~~~~~~~~~~~~----~~~~~lae~L~~~~~~-~~~~~v~f--~~sG  113 (449)
T PRK07481         43 KLLDGVGGLWNVNVGH--NREEVKEAIVRQLDELEYYSTFDGTTH----PRAIELSYELIDMFAP-EGMRRVFF--SSGG  113 (449)
T ss_pred             EEEECchhHHhhcCCC--CCHHHHHHHHHHHHhccceecccccCC----HHHHHHHHHHHHhcCC-CCCCEEEE--cCch
Confidence            6888866532112222  2345556655554331101 01  122    2333344444332211 11257877  9999


Q ss_pred             hHHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHH-HhhCC------------CCeEEEecccCC--CCC-CCHHH
Q 017967          161 TGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNI-FNDAR------------VPWSEYRYYDPK--TVG-LDFEG  218 (363)
Q Consensus       161 t~al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~~-~~~~G------------~~~~~v~~~~~~--~~~-~d~~~  218 (363)
                      ++|.+.+..+.+.+.     +| .+|+...-+|.+.... +...|            -.+..++.....  .++ -|++.
T Consensus       114 sEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~  193 (449)
T PRK07481        114 SDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEE  193 (449)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHH
Confidence            999999877655442     33 5688888888665321 11111            012222211000  011 13333


Q ss_pred             H--------HHHHH-cCCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH
Q 017967          219 M--------IADIK-AAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (363)
Q Consensus       219 l--------~~~l~-~~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  288 (363)
                      +        ++.+. ..++....+++-.-+.-.|.. .+.+-++++.++|+++|+++|.||+..+|.-.+   ..+....
T Consensus       194 ~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~a~~~  270 (449)
T PRK07481        194 LARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG---SWFGSRG  270 (449)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc---hhhHhhh
Confidence            3        33333 222334455444334444664 567779999999999999999999999884322   1222221


Q ss_pred             HHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChh
Q 017967          289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       289 ~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                       .+-.+++++   ++|.++ .| +-+|.+  ++. ++
T Consensus       271 -~gv~PDiv~---~gKgl~-gG~~Pi~av--~~~-~~  299 (449)
T PRK07481        271 -WGVKPDIMC---LAKGIT-SGYVPLGAT--MVN-AR  299 (449)
T ss_pred             -cCCCCCEEE---Eeeccc-CCCcCceEE--EEc-HH
Confidence             222344443   489998 67 488988  665 55

>PRK06917 hypothetical protein; Provisional

Probab=98.40  E-value=6.9e-05  Score=73.98  Aligned_cols=226  Identities=12%  Similarity=-0.010  Sum_probs=117.0

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      .+++ .+||+..|.-...-|+  -.+.|.+++.+.+.... +.+..... .+.+..+|+.+.....  ...+++.+  +.
T Consensus        28 ~dG~-~ylD~~~g~~~~~lGh--~hp~v~~Ai~~ql~~~~-~~~~~~~~-~~~~~~lae~L~~~~p--~~~~~v~f--~~   98 (447)
T PRK06917         28 QNGN-KYFDGSSGAVTAGIGH--GVKEIADAIKEQAEEVS-FVYRSQFT-SEPAEKLAKKLSDLSP--GDLNWSFF--VN   98 (447)
T ss_pred             CCCC-EEEECchhHHhccCCC--CCHHHHHHHHHHHhhCc-CccccccC-CHHHHHHHHHHHHhCC--CCCCEEEE--eC
Confidence            3443 7888876642111222  23455555555443211 11111011 1233344444433211  11256777  99


Q ss_pred             chhHHHHHHHHHHHHh---C--CC-CEEEEcCCCCcchHHHH-hhCCC------------CeEEEecccCCC--CCC---
Q 017967          159 SGTGSLRLAAALIERY---F--PG-AKVLISSPTWGNHKNIF-NDARV------------PWSEYRYYDPKT--VGL---  214 (363)
Q Consensus       159 ggt~al~l~~~l~~~~---~--~g-d~Vlv~~P~y~~~~~~~-~~~G~------------~~~~v~~~~~~~--~~~---  214 (363)
                      +|++|.+.+..+....   .  +| .+|+...-+|.+..... ...|.            .+..++......  ++-   
T Consensus        99 sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  178 (447)
T PRK06917         99 SGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYP  178 (447)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChH
Confidence            9999999986654332   1  33 57888888886654322 21111            111222100000  000   


Q ss_pred             -----CHHHHHHHHHcCC-CCcEEEEEcCCC-CCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHH
Q 017967          215 -----DFEGMIADIKAAP-GGSFILLHGCAH-NPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (363)
Q Consensus       215 -----d~~~l~~~l~~~~-~~~~~~~i~~p~-NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~  286 (363)
                           +++.+++.+.... +....+++-.-+ |--|. ..+.+-+++|.++|+++|+++|.||+..+|.-.+   .....
T Consensus       179 ~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG---~~~a~  255 (447)
T PRK06917        179 TCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG---AMFAM  255 (447)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCccc---chhhH
Confidence                 2456677776432 233344432223 23344 4578889999999999999999999998873221   11222


Q ss_pred             HHHHhcCCeEEEEEcCccccccccc-cceEEEEeeCChh
Q 017967          287 RLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSD  324 (363)
Q Consensus       287 ~~~~~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~  324 (363)
                      ..+ +-.+++   -.|+|.++ .|+ -+|.+  ++. ++
T Consensus       256 ~~~-gv~PDi---~~~gK~l~-~G~~Pi~a~--~~~-~~  286 (447)
T PRK06917        256 EHW-GVEPDI---MTLGKGLG-AGYTPIAAT--VVS-DR  286 (447)
T ss_pred             Hhc-CCCCCE---EEeeehhc-cCCcceEEE--EEc-HH
Confidence            222 222344   35699998 785 78888  554 55

>PRK07483 hypothetical protein; Provisional

Probab=98.40  E-value=6.3e-05  Score=74.19  Aligned_cols=220  Identities=16%  Similarity=0.168  Sum_probs=116.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.-...-|+  -.+.+.+++.+.++...  ...+..    .+....+|+.+......  ..+++.+  +.+|+
T Consensus        31 ~ylD~~~g~~~~~lGh--~~p~v~~av~~ql~~~~~~~~~~~~----~~~~~~lae~L~~~~p~--~~~~v~f--~~sGs  100 (443)
T PRK07483         31 RYLDASGGAAVSCLGH--SHPRVIAAIHAQIDRLAYAHTSFFT----TEPAEALADRLVAAAPA--GLEHVYF--VSGGS  100 (443)
T ss_pred             EEEEcCccHhhhccCC--CCHHHHHHHHHHHHhccCccccccC----CHHHHHHHHHHHHhCCC--CCCEEEE--cCCcH
Confidence            7888876642222222  23556666655553311  011111    22333444444332111  1258877  99999


Q ss_pred             HHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHH-HHhhCCC------------CeEEEecccC-CCC--CC-----
Q 017967          162 GSLRLAAALIERYF-----PG-AKVLISSPTWGNHKN-IFNDARV------------PWSEYRYYDP-KTV--GL-----  214 (363)
Q Consensus       162 ~al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~-~~~~~G~------------~~~~v~~~~~-~~~--~~-----  214 (363)
                      +|.+.+..+...+.     +| .+|+...-+|.+... .+...|-            .+..++.... ...  ..     
T Consensus       101 EAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (443)
T PRK07483        101 EAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAY  180 (443)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHH
Confidence            99999977665551     33 468887777765532 1211110            1122221000 000  00     


Q ss_pred             ---CHHHHHHHHHc-CCCCcEEEEEcCCCC-CCC-CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH
Q 017967          215 ---DFEGMIADIKA-APGGSFILLHGCAHN-PTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (363)
Q Consensus       215 ---d~~~l~~~l~~-~~~~~~~~~i~~p~N-PTG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  288 (363)
                         .++.+++.+.. .++....+++-.-+- --| ...+.+-+++|.++|++||+++|.||+..+|.-.+   ..+....
T Consensus       181 ~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG---~~~a~~~  257 (443)
T PRK07483        181 GQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG---TLFACEE  257 (443)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc---HHHHHhh
Confidence               12566665542 223344444332221 124 45678889999999999999999999998884322   1222222


Q ss_pred             HHhcCCeEEEEEcCccccccccc-cceEEEEeeCChh
Q 017967          289 FATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSD  324 (363)
Q Consensus       289 ~~~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~  324 (363)
                      + .-.+++++   |+|.++ .|+ -+|.+  ++. ++
T Consensus       258 ~-gv~PDiv~---~gK~l~-gG~~Pi~av--~~~-~~  286 (443)
T PRK07483        258 D-GVAPDLVT---IAKGLG-AGYQPIGAV--LAS-DR  286 (443)
T ss_pred             c-CCCCCeee---ehhhhc-cCccccEEE--EEc-HH
Confidence            2 22344443   499998 785 89988  665 55

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.40  E-value=5.6e-05  Score=74.06  Aligned_cols=214  Identities=12%  Similarity=0.074  Sum_probs=114.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCC--CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.-...-|+  -.+.+.+++.+.++......+  .......+|.+.+++..    ..  .-+++.+  +.+|+
T Consensus        41 ~ylD~~~g~~~~~lGh--~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~----p~--~~~~v~f--~~SGs  110 (422)
T PRK05630         41 TVIDAMSSWWSAAHGH--GHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLT----DN--GLDHVFY--SDSGS  110 (422)
T ss_pred             EEEEcchhHHHhcCCC--CCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhC----CC--CcCEEEE--eCCcH
Confidence            7888876643222222  234555555554432110111  11222334444444442    11  1257877  99999


Q ss_pred             HHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHHh-hCC-------------CCeEEEecccCCCCCCC------
Q 017967          162 GSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFN-DAR-------------VPWSEYRYYDPKTVGLD------  215 (363)
Q Consensus       162 ~al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~~~~-~~G-------------~~~~~v~~~~~~~~~~d------  215 (363)
                      +|.+.+..+...+.     +| .+|+...-+|.+....+. ..+             ..+..+|..  .....+      
T Consensus       111 eA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~  188 (422)
T PRK05630        111 VSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAP--PVRGSSPQEISE  188 (422)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCC--cccCCChHHHHH
Confidence            99999876655442     23 468888888876432221 111             012222221  001111      


Q ss_pred             -HHHHHHHHHcCCCCcEEEEEcCC--CCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh
Q 017967          216 -FEGMIADIKAAPGGSFILLHGCA--HNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (363)
Q Consensus       216 -~~~l~~~l~~~~~~~~~~~i~~p--~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  291 (363)
                       .+.+++.+.   ++...+++ .|  +.-.|.. .+.+-+++|.++|+++|+++|.||+..+|...+   ..+... ...
T Consensus       189 ~~~~~~~~~~---~~iAAvi~-EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG---~~~a~~-~~g  260 (422)
T PRK05630        189 YLRSLELLID---ETVAAIII-EPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG---ELFATL-AAG  260 (422)
T ss_pred             HHHHHHHHHh---hceEEEEE-echhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc---hhhHHH-hcC
Confidence             234444443   23444443 44  5556764 567889999999999999999999998774322   122221 112


Q ss_pred             cCCeEEEEEcCcccccccc-ccceEEEEeeCChh
Q 017967          292 RGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       292 ~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                      -.++++   .|+|.++ .| .-+|++  ++. ++
T Consensus       261 v~PDi~---t~gK~l~-gG~~p~~av--~~~-~~  287 (422)
T PRK05630        261 VTPDIM---CVGKALT-GGFMSFAAT--LCT-DK  287 (422)
T ss_pred             CCCCee---eeechhh-cCcccccee--ecc-HH
Confidence            223444   7799886 57 478888  554 65

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=98.36  E-value=9.1e-05  Score=73.11  Aligned_cols=163  Identities=11%  Similarity=0.068  Sum_probs=94.3

Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHHHHh-hCC------------CCeEEEeccc--
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYF-----PG-AKVLISSPTWGNHKNIFN-DAR------------VPWSEYRYYD--  208 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~~~~-~~G------------~~~~~v~~~~--  208 (363)
                      +++.+  +.+|++|.+.+..+...+.     ++ .+|+...-+|.+...... ..|            ..+..+|...  
T Consensus       110 ~~v~f--~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (445)
T PRK09221        110 DHVFF--TNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDL  187 (445)
T ss_pred             CEEEE--eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccc
Confidence            57877  9999999999876655442     22 478888888866532111 111            1122233210  


Q ss_pred             -CCCCCC--------CHHHHHHHHHcCC-CCcEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCC
Q 017967          209 -PKTVGL--------DFEGMIADIKAAP-GGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (363)
Q Consensus       209 -~~~~~~--------d~~~l~~~l~~~~-~~~~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~  277 (363)
                       ...+..        ..+.+++.+.... ++...+++-.-+.-.|... +.+-+++|.++|+++|+++|+||+..+|.-.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt  267 (445)
T PRK09221        188 PENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRL  267 (445)
T ss_pred             cccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcC
Confidence             000111        1356777776432 3344555444455556644 5677899999999999999999998887432


Q ss_pred             CCCCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhH
Q 017967          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDL  325 (363)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~  325 (363)
                      +   ..+....+ .-.++   +-.|+|.++ .| +-+|.+  ++. ++.
T Consensus       268 G---~~~~~~~~-gv~PD---i~~~gK~l~-gG~~Pi~av--~~~-~~i  305 (445)
T PRK09221        268 G---AAFAAERF-GVTPD---IITFAKGLT-NGAIPMGAV--IAS-DEI  305 (445)
T ss_pred             c---hhhHHHhc-CCCCC---EEEeccccc-cCcccceee--EEc-HHH
Confidence            2   12222222 21223   347799997 56 568888  554 663

>PRK07036 hypothetical protein; Provisional

Probab=98.36  E-value=0.00015  Score=71.92  Aligned_cols=227  Identities=12%  Similarity=0.103  Sum_probs=118.0

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      .+++ .+||+..|.-...-|+  -.+.+.+++.+.+... ....+..  ...+.+..+|+.+......  .-+++.+  +
T Consensus        48 ~dG~-~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~~~~~~~~--~~~~~~~~lae~L~~~~p~--~~~~v~f--~  118 (466)
T PRK07036         48 ADGR-RYLDGIGGMWCVNVGY--GREEMADAIADQARRLPYYTPFGD--MTNAPAAELAAKLAELAPG--DLNHVFL--T  118 (466)
T ss_pred             CCCC-EEEECcccHHhhcCCC--CCHHHHHHHHHHHHhCcccccccc--cCCHHHHHHHHHHHHhCCC--CcCEEEE--e
Confidence            3443 6888876642111222  2345555555544321 1111110  1123334444444332111  1257877  9


Q ss_pred             cchhHHHHHHHHHHHHh----C-CC-CEEEEcCCCCcchHHHHh-hCCC------------CeEEEecccC--CCCCCC-
Q 017967          158 LSGTGSLRLAAALIERY----F-PG-AKVLISSPTWGNHKNIFN-DARV------------PWSEYRYYDP--KTVGLD-  215 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~----~-~g-d~Vlv~~P~y~~~~~~~~-~~G~------------~~~~v~~~~~--~~~~~d-  215 (363)
                      .+|++|.+.+..+...+    . +| .+|+...-+|.+....+. ..|.            .+..++..+.  ...+.. 
T Consensus       119 ~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  198 (466)
T PRK07036        119 TGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSE  198 (466)
T ss_pred             CCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCCh
Confidence            99999999987665444    1 22 578888877866543221 1111            1222322100  011211 


Q ss_pred             -------HHHHHHHHHc-CCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHH
Q 017967          216 -------FEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (363)
Q Consensus       216 -------~~~l~~~l~~-~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~  286 (363)
                             .+.+++.+.. .++....+++-..+.-.|.. .+.+-+++|.++|++||+++|.||+..+|.-.+   ..+..
T Consensus       199 ~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~~~~~  275 (466)
T PRK07036        199 AAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG---HFFAS  275 (466)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc---hhhhh
Confidence                   2345555543 23334455444344444664 567888999999999999999999998884321   11222


Q ss_pred             HHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChh
Q 017967          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       287 ~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                      .....-.++++   .|+|.++ .| +-+|.+  ++. ++
T Consensus       276 ~~~~gv~PDiv---t~gK~l~-gG~~Pi~av--~~~-~~  307 (466)
T PRK07036        276 EAVFGIQPDII---TFAKGLT-SGYQPLGAV--IIS-ER  307 (466)
T ss_pred             hhhcCCCCCEE---EEccccc-cCccccEEE--EEc-HH
Confidence            21112223433   5699998 68 488998  665 66

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=98.36  E-value=0.00011  Score=73.54  Aligned_cols=223  Identities=17%  Similarity=0.084  Sum_probs=118.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCC-cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI-EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .+||+..|.-...-|+  -.+.+.+++.+.++... + +... .+..+....+++.+.....+ ..-+++.+  +++|++
T Consensus        90 ~ylD~~sg~~~~~lGh--~hp~v~~Av~~ql~~~~-~-~~~~~~~~~~~~~~lae~L~~~~~~-~~~~~v~f--~~SGsE  162 (504)
T PLN02760         90 KYLDALAGLWCTALGG--SEPRLVAAATEQLNKLP-F-YHSFWNRTTKPSLDLAKELLEMFTA-RKMGKVFF--TNSGSE  162 (504)
T ss_pred             EEEEcCcCHHhcccCC--CCHHHHHHHHHHHhhcc-c-eecccccCcHHHHHHHHHHHhhcCC-CCCCEEEE--eCChHH
Confidence            7889877642222232  24556666655553311 1 1111 12233444455554332111 11246777  999999


Q ss_pred             HHHHHHHHHHHh----C-CC-CEEEEcCCCCcchHHHH-hhCCCC------------eEEEecccCCCCC----------
Q 017967          163 SLRLAAALIERY----F-PG-AKVLISSPTWGNHKNIF-NDARVP------------WSEYRYYDPKTVG----------  213 (363)
Q Consensus       163 al~l~~~l~~~~----~-~g-d~Vlv~~P~y~~~~~~~-~~~G~~------------~~~v~~~~~~~~~----------  213 (363)
                      |.+.+..+...+    . +| .+|+..+-+|.+..... ...|..            +..++......+.          
T Consensus       163 A~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  242 (504)
T PLN02760        163 ANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFS  242 (504)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHH
Confidence            999986655433    1 33 57888888886653322 212211            1122210000000          


Q ss_pred             -CCHHHHHHHHHc-CCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH
Q 017967          214 -LDFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (363)
Q Consensus       214 -~d~~~l~~~l~~-~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  290 (363)
                       ...+.+++.+.. .++....+++-.-+.-.|.. .+.+-+++|.++|+++|+++|.||+..+|.-.+   .......+ 
T Consensus       243 ~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG---~~~a~e~~-  318 (504)
T PLN02760        243 TRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLG---TMFGCDKY-  318 (504)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccc---hhhHHHhc-
Confidence             012456666643 22334445443334444654 467889999999999999999999988884322   12222222 


Q ss_pred             hcCCeEEEEEcCcccccccc-ccceEEEEeeCChh
Q 017967          291 TRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       291 ~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                      .-.++   +-.|+|.+| .| +-+|.+  ++. ++
T Consensus       319 gv~PD---ivtlgK~lg-gG~~PigAv--~~~-~~  346 (504)
T PLN02760        319 NIKPD---LVSLAKALS-SAYMPIGAV--LVS-PE  346 (504)
T ss_pred             CCCCc---EEEeccccc-CCccccceE--eec-HH
Confidence            22233   466799998 56 478888  665 66

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.35  E-value=4.4e-05  Score=71.66  Aligned_cols=213  Identities=18%  Similarity=0.243  Sum_probs=132.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCC-----CCCCC-Ccch---HHHHHHHHHHHhcCCCCcccCCcEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-----KEYLP-IEGL---AAFNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-----~~Y~~-~~G~---~~lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      ..|+|=.-++       +..+.|.++.-..+.....     .+|.. ..-.   +.|....|+-+++...     -+   
T Consensus        27 ~~ieLIASEN-------~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~-----an---   91 (413)
T COG0112          27 EHIELIASEN-------FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEY-----AN---   91 (413)
T ss_pred             hceeeeeccc-------cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCc-----cc---
Confidence            6788875443       3567888887665532222     23322 2212   2333333444444321     23   


Q ss_pred             EeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH---hhCC--CCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF---NDAR--VPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~---~~~G--~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      +|-.+|++|...+  ++.++.|||+|+-.+-...++...-   ...|  .+.+.|+++ .++..+|.|++++...+.  +
T Consensus        92 VQPhSGs~AN~av--~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd-~et~~IDyD~~~k~a~e~--k  166 (413)
T COG0112          92 VQPHSGSQANQAV--YLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVD-PETGLIDYDEVEKLAKEV--K  166 (413)
T ss_pred             cCCCCchHHHHHH--HHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccc-cccCccCHHHHHHHHHHh--C
Confidence            3457788886666  6778899999999998887775433   2223  356777774 457899999999988863  4


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCC-CCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l  308 (363)
                      +++++..--..|-     .-+++++.++|.+-|.++++|.+. .++.-++..+++.+        .--++..|-.|+|  
T Consensus       167 PK~ii~G~SaY~r-----~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~--------~AdvVTtTTHKTl--  231 (413)
T COG0112         167 PKLIIAGGSAYSR-----PIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP--------HADVVTTTTHKTL--  231 (413)
T ss_pred             CCEEEECcccccc-----ccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC--------ccceEeCCcccCC--
Confidence            5566644333332     235667777789999999999995 34443332211111        1346788899998  


Q ss_pred             ccccceEEEEeeCChhHHHHHHHHHHhhh
Q 017967          309 YAERIGAMNVVCSSSDLAARVKSQLKRLA  337 (363)
Q Consensus       309 ~G~RvG~i~~v~~~~~~~~~~~~~l~~~~  337 (363)
                      .|=|-|.|  .+.+++    +.+.+.+..
T Consensus       232 rGPrGG~I--l~~~ee----l~kkin~aV  254 (413)
T COG0112         232 RGPRGGII--LTNDEE----LAKKINSAV  254 (413)
T ss_pred             CCCCceEE--EeccHH----HHHHhhhhc
Confidence            59999998  666556    666666543

>PRK07480 putative aminotransferase; Validated

Probab=98.35  E-value=7.4e-05  Score=73.96  Aligned_cols=253  Identities=12%  Similarity=0.079  Sum_probs=128.2

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-C---CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-N---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~---~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~  153 (363)
                      +.+++ .+||+..|.-...-|+  -.+.+.+++.+.++... .   ..| ......+|-+.+++.+-    .  .-+++.
T Consensus        46 D~dG~-~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~~~~~~~~~-~~~~~~~lae~L~~~~p----~--~~~~v~  115 (456)
T PRK07480         46 DSEGN-KILDGMAGLWCVNVGY--GRKELADAAARQMRELPYYNTFFKT-THPPAIELAAKLAEVAP----P--GFNHVF  115 (456)
T ss_pred             eCCCC-EEEEccchHHHhcCCC--CCHHHHHHHHHHHHhcCCccccccc-CCHHHHHHHHHHHHhCC----C--CcCEEE
Confidence            33443 7888876642111222  23455555555443211 0   112 22223344444444421    1  125787


Q ss_pred             EEeccchhHHHHHHHHHHHHh----C-CC-CEEEEcCCCCcchHHH-HhhCCC------------CeEEEeccc--CCCC
Q 017967          154 TVQGLSGTGSLRLAAALIERY----F-PG-AKVLISSPTWGNHKNI-FNDARV------------PWSEYRYYD--PKTV  212 (363)
Q Consensus       154 ~~~t~ggt~al~l~~~l~~~~----~-~g-d~Vlv~~P~y~~~~~~-~~~~G~------------~~~~v~~~~--~~~~  212 (363)
                      +  +.+|++|.+.+..+.+.+    . +| .+|+...-+|.+.... +...|.            .+..++...  ...+
T Consensus       116 f--~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~  193 (456)
T PRK07480        116 F--TNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGG  193 (456)
T ss_pred             E--eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCccccccc
Confidence            7  999999999997765554    1 33 4677777777654321 111111            111122100  0000


Q ss_pred             CCC--------HHHHHHHHHc-CCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCc
Q 017967          213 GLD--------FEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (363)
Q Consensus       213 ~~d--------~~~l~~~l~~-~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~  282 (363)
                      ..+        .+.+++.+.+ .++....+++-.-+.-.|.. .+.+-+++|.++|++||+++|.||+..+|.-.+   .
T Consensus       194 ~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG---~  270 (456)
T PRK07480        194 DMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG---E  270 (456)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc---c
Confidence            011        2556554532 22334455544434445664 456679999999999999999999998884322   1


Q ss_pred             hhHHHHHHhcCCeEEEEEcCccccccccc-cceEEEEeeCChhHHHHHHHHHH----hhhccccCCCchHHHHHHhcccc
Q 017967          283 ASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLK----RLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       283 ~~~~~~~~~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~~~~~~~~~l~----~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      .+....+ .-.+++   -.|+|.++ .|+ -+|.+  ++. ++    +.+.+.    ...-...++-++++..++...|+
T Consensus       271 ~~a~~~~-gv~PDi---v~~gK~l~-gG~~Pi~av--~~~-~~----i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~  338 (456)
T PRK07480        271 WFGSQHF-GIKPDL---MTIAKGLT-SGYIPMGAV--GVG-DR----VAEVLIEEGGEFNHGFTYSGHPVAAAVALANLR  338 (456)
T ss_pred             hhhhhhc-CCCCCe---eeeehhhc-cCCccceEE--EEc-HH----HHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHH
Confidence            2222222 222343   35699998 674 78888  664 66    333331    11112233455566555544443

>PRK06105 aminotransferase; Provisional

Probab=98.32  E-value=0.00015  Score=71.95  Aligned_cols=225  Identities=13%  Similarity=0.091  Sum_probs=118.7

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCC--CCCcchHHHHHHHHHHHhcCCCCcccCCcEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      +.+++ .+||+..|.-...-|+  -.+.+.+++.+.++... ...+  .......+|-+.+++.+    ..  .-+++.+
T Consensus        44 D~dG~-~ylD~~~g~~~~~lGh--~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~----p~--~~~~v~f  114 (460)
T PRK06105         44 DDAGK-RYIEGMAGLWSVALGF--SEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMA----PV--PMSKVFF  114 (460)
T ss_pred             ECCCC-EEEEcchhHHhccCCC--CCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhC----CC--CCCEEEE
Confidence            33443 7889877742222222  24556666655553311 0111  01122233444444432    11  1257877


Q ss_pred             EeccchhHHHHHHHHHHHHh----C-CC-CEEEEcCCCCcchHHHH-hhCCC------------CeEEEecccCCCCC--
Q 017967          155 VQGLSGTGSLRLAAALIERY----F-PG-AKVLISSPTWGNHKNIF-NDARV------------PWSEYRYYDPKTVG--  213 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~----~-~g-d~Vlv~~P~y~~~~~~~-~~~G~------------~~~~v~~~~~~~~~--  213 (363)
                        +++|++|.+.+..+....    . +| .+|+...-+|.+..... ...|.            .+..++..+...+.  
T Consensus       115 --~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  192 (460)
T PRK06105        115 --TNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLP  192 (460)
T ss_pred             --eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccC
Confidence              999999999986664333    1 23 46887777775553221 11111            11222221000000  


Q ss_pred             ---------CCHHHHHHHHHc-CCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCc
Q 017967          214 ---------LDFEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (363)
Q Consensus       214 ---------~d~~~l~~~l~~-~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~  282 (363)
                               ...+.+++.+.. .+++...+++-.-+.--|.. .+.+-+++|.++|+++|+++|.||+..+|.-.+   .
T Consensus       193 ~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG---~  269 (460)
T PRK06105        193 GESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG---N  269 (460)
T ss_pred             CCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCc---h
Confidence                     013567777643 22334444443334444655 578889999999999999999999998884322   1


Q ss_pred             hhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChh
Q 017967          283 ASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSD  324 (363)
Q Consensus       283 ~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~  324 (363)
                      .+....+ +-.+++   -.|+|.++ .| +-+|.+  ++. ++
T Consensus       270 ~f~~~~~-~v~PDi---~~~gK~lg-gG~~P~~av--~~~-~~  304 (460)
T PRK06105        270 MFGCETF-GIKPDI---LVMSKQLS-SSYQPLSAV--LMN-EK  304 (460)
T ss_pred             hhhHHhc-CCCCCe---eeeecccc-cCcccceEE--EEc-HH
Confidence            2222222 222333   36799998 56 578888  664 66

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.28  E-value=0.00024  Score=70.41  Aligned_cols=257  Identities=14%  Similarity=0.087  Sum_probs=128.2

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC-CcEEEEe
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQ  156 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~  156 (363)
                      ..+++ .+||+..|.-...-|+  -.|.+.+++.+.+........  ..-..+.+..+|+.+.......... ..+++  
T Consensus        54 D~dG~-~ylD~~~g~~~~~lGH--~~p~v~~Ai~~q~~~~~~~~~--~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~--  126 (459)
T PRK06931         54 DVEGN-QYLDCLAGAGTLALGH--NHPDVLQSIQDVLTSGLPLHT--LDLTTPLKDAFSEYLLSLLPGQGKEYCLQFT--  126 (459)
T ss_pred             eCCCC-EEEEcccchhhccCCC--CCHHHHHHHHHHHhhhccccc--cccCCHHHHHHHHHHHHhCCCccccceEEEe--
Confidence            34443 7888877743222222  234566666555432110111  0011234444555543322100000 12233  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CC------------CCeEEEecccCCC--CC----CCHH
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-AR------------VPWSEYRYYDPKT--VG----LDFE  217 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G------------~~~~~v~~~~~~~--~~----~d~~  217 (363)
                      +++|++|.+.+..+.+.+....+|+...-+|.+....... .|            -.+..+|..+...  ++    -+.+
T Consensus       127 ~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (459)
T PRK06931        127 GPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVK  206 (459)
T ss_pred             CCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHH
Confidence            6899999999977665554446788888888666433321 11            1122333211100  11    0122


Q ss_pred             HH----HHHHHc---CCCCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH
Q 017967          218 GM----IADIKA---APGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (363)
Q Consensus       218 ~l----~~~l~~---~~~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  289 (363)
                      .+    ++.+..   .+++...+++-.-+--.|. ..+.+-++++-++|+++|+++|.||+..+|.-.+   ..+....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG---~~~a~~~~  283 (459)
T PRK06931        207 ALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTG---KMFAFEHA  283 (459)
T ss_pred             HHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCc---hHHHhhhc
Confidence            22    333321   1223444444222333354 4578889999999999999999999998884322   12222222


Q ss_pred             HhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       290 ~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       .-.+++++   ++|.++ .|+-+|.+  +.. ++ +    +.+........++-++++..++...|+
T Consensus       284 -gv~PDivt---~gK~l~-gG~Pi~av--~~~-~~-~----~~~~~~~~~~T~~gnpla~aaala~L~  338 (459)
T PRK06931        284 -GIEPDIIV---MSKAVG-GGLPLAVL--GIK-KE-F----DAWQPGGHTGTFRGNQLAMATGLTTLK  338 (459)
T ss_pred             -CCCCCEEE---eccccc-CCcceeee--eeH-HH-H----hhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence             22344443   499998 78999977  443 43 2    222211122233455666555544443

>PRK05367 glycine dehydrogenase; Provisional

Probab=98.26  E-value=5.1e-05  Score=80.89  Aligned_cols=172  Identities=15%  Similarity=0.147  Sum_probs=108.3

Q ss_pred             cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh--CCCC----EEEEcCCCCcchHHHHhhCCC
Q 017967          126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FPGA----KVLISSPTWGNHKNIFNDARV  199 (363)
Q Consensus       126 ~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~--~~gd----~Vlv~~P~y~~~~~~~~~~G~  199 (363)
                      +|..++...+.+++....|.    +++.+ +.+||+++........+.+  .+||    +|++++-.+......+...|+
T Consensus       538 qG~l~~i~e~q~~l~eltG~----d~~sl-~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~  612 (954)
T PRK05367        538 AGYRELIDQLEAWLAEITGY----DAVSL-QPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGM  612 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHCC----CCEEE-CccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCC
Confidence            45555555555555444443    35544 3445555543332122222  3665    599999999888888899999


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++++  .++.+|+++|++.+.++..+.+++++.+|++- |..  .+++++|+++|+++|+++++|.++..-... .
T Consensus       613 ~vv~v~~d--~~G~iD~~~L~~~i~~~~~~la~V~it~pst~-G~~--e~~I~eI~~i~h~~G~~v~VDgA~~~al~~-l  686 (954)
T PRK05367        613 KVVVVACD--ENGNIDLDDLRAKAEEHADNLAAIMITYPSTH-GVF--EETIREICEIVHEHGGQVYLDGANMNAQVG-L  686 (954)
T ss_pred             EEEEECCC--CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCC-eee--cCCHHHHHHHHHHcCCEEEEECcChhhccC-C
Confidence            99999984  35789999999999754334666666676654 322  245788888899999999999997422111 0


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCcccccc----ccccceEE
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGL----YAERIGAM  316 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l----~G~RvG~i  316 (363)
                      .    ..   .+.+- .++..|..|.|+.    .|=-+|.+
T Consensus       687 ~----~p---g~~GA-Di~~~s~HK~f~~P~G~GGPg~G~l  719 (954)
T PRK05367        687 A----RP---GDIGA-DVSHLNLHKTFCIPHGGGGPGVGPI  719 (954)
T ss_pred             C----Ch---hhcCC-CEEEecCcccCCCCcCCCCCceEEE
Confidence            0    00   12222 3667778898642    23446777

>PRK06149 hypothetical protein; Provisional

Probab=98.24  E-value=0.00016  Score=78.12  Aligned_cols=246  Identities=13%  Similarity=0.073  Sum_probs=127.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|..  .-|+  -.+.|.+++.+.+.... ...| ......+|.+.+++.+-.      .-+.+.+  +++|++
T Consensus       586 ~ylD~~~~~~--~lGh--~hp~v~~Ai~~q~~~l~~~~~~-~~~~~~elae~L~~~~p~------~~~~v~f--~~SGsE  652 (972)
T PRK06149        586 SYLDMVNNVT--VLGH--GHPRLAAAAARQWSLLNTNSRF-HYAAVAEFSERLAALAPD------GLDTVFL--VNSGSE  652 (972)
T ss_pred             EEEECCCCcc--ccCC--CCHHHHHHHHHHHHhccccccc-cCHHHHHHHHHHHHhCCC------CcCEEEE--eCCchH
Confidence            6888876542  1222  23455555554443211 1112 122334555555555311      1257777  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-h-------CCC------CeEEEecccCC--CCC-CC-----HHHHH
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-D-------ARV------PWSEYRYYDPK--TVG-LD-----FEGMI  220 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~-------~G~------~~~~v~~~~~~--~~~-~d-----~~~l~  220 (363)
                      |.+.+..+...+....+|+...-+|.+...... .       .+.      .+..++..+..  .+. .+     .+.++
T Consensus       653 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~  732 (972)
T PRK06149        653 ANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVV  732 (972)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHH
Confidence            999997665555444678877777765431110 0       000      11222211000  011 11     23444


Q ss_pred             HHHH---cCCCCcEEEEEcC-CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeE
Q 017967          221 ADIK---AAPGGSFILLHGC-AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (363)
Q Consensus       221 ~~l~---~~~~~~~~~~i~~-p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~v  296 (363)
                      +.++   ...++...+++-. .++--....+.+-+++|.++|+++|+++|.||+..+|.-.+  ...+.+..+ .-.+++
T Consensus       733 ~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG--~~~~a~e~~-gv~PDi  809 (972)
T PRK06149        733 AQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLG--HYFWGFEQQ-GVVPDI  809 (972)
T ss_pred             HHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccC--ccchhhhhc-CCCCCE
Confidence            4333   2223343444322 24433355677889999999999999999999987874332  112222222 222344


Q ss_pred             EEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHh--hhccccCCCchHHHHHHhcccc
Q 017967          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR--LARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       297 i~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~--~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +   +|+|.+| .|+-+|.+  ++. ++    +.+.+..  ....++ +-++++-.++...|+
T Consensus       810 v---t~gK~lg-~G~Pl~av--~~~-~~----i~~~~~~~~~~~sT~-~gnP~~~aaala~L~  860 (972)
T PRK06149        810 I---TMAKGMG-NGHPLGAV--ITR-RE----IAEALEAEGYFFSST-GGSPVSCRIGMAVLD  860 (972)
T ss_pred             E---Eeccccc-CCeeeEEE--EEc-HH----HHhhhccCCcccCCC-CCCHHHHHHHHHHHH
Confidence            4   7799998 78889999  665 56    4444432  111222 445555555544443

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.21  E-value=0.0001  Score=74.76  Aligned_cols=164  Identities=9%  Similarity=0.015  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC--C------
Q 017967          105 VVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--P------  176 (363)
Q Consensus       105 ~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~--~------  176 (363)
                      .+...+..+..+. ...|....+...+.+.+.+++.+..|.+- .+.+ +  |.|||.|...+..+.+...  |      
T Consensus        99 ila~~~a~~~N~n-~~~~e~SP~~t~lE~~vi~~la~l~G~~~-~~G~-~--TsGGT~ANl~aL~~AR~~k~~p~a~~~~  173 (608)
T TIGR03811        99 ILAYNYAMLWNGN-NVAYESSPATSQMEEEVGKEFATLMGYKN-GWGH-I--VADGSLANLEGLWYARNIKSLPFAMKEV  173 (608)
T ss_pred             HHHHHHHHHhCCC-CCccccCchHHHHHHHHHHHHHHHhCCCC-CCeE-E--eCChHHHHHHHHHHHHHhhhccchhhhc
Confidence            3334444444332 24454555667788888887766655432 2333 3  7999998765532221110  1      


Q ss_pred             ------------------------------------------C------CEEEEcCCCCcchHHHHhhCCC---CeEEEe
Q 017967          177 ------------------------------------------G------AKVLISSPTWGNHKNIFNDARV---PWSEYR  205 (363)
Q Consensus       177 ------------------------------------------g------d~Vlv~~P~y~~~~~~~~~~G~---~~~~v~  205 (363)
                                                                |      -+|+++.-.+..+...+...|+   +++.||
T Consensus       174 ~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~Vp  253 (608)
T TIGR03811       174 KPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVP  253 (608)
T ss_pred             cccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEee
Confidence                                                      0      0578888878888889998998   589999


Q ss_pred             cccCCCCCCCHHHHHHHHHc---CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCC--eEEEecCCCCCc
Q 017967          206 YYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNH--IPFFDVAYQGFA  275 (363)
Q Consensus       206 ~~~~~~~~~d~~~l~~~l~~---~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~--~ii~De~y~~~~  275 (363)
                      ++  +++.+|++.|++.+.+   ....+..++-+-+.-.+|.+=+.+++.+|.+.++++|+  ++-+|.+|.++.
T Consensus       254 vD--~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~  326 (608)
T TIGR03811       254 VD--SNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYG  326 (608)
T ss_pred             cC--CCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchh
Confidence            84  4689999999998864   22234445556678889988666666666655588897  699999999863

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK06148 hypothetical protein; Provisional

Probab=98.20  E-value=0.0002  Score=77.44  Aligned_cols=246  Identities=13%  Similarity=0.054  Sum_probs=127.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|..  .-|+  -.+.|.+++.+.+... ....| ......+|-+.+++.+-    .  .-+.+.+  +++|++
T Consensus       625 ~ylD~~~g~~--~lGH--~hp~v~~Ai~~q~~~l~~~~~~-~~~~~~~lAe~L~~~~p----~--~~~~v~f--~nSGsE  691 (1013)
T PRK06148        625 AYLDCFNNVC--HVGH--AHPRVVAAAARQAARLNTNTRY-LHDAIVAYAERLTATLP----D--GLTVAFF--VNSGSE  691 (1013)
T ss_pred             EEEEcccChh--hcCC--CCHHHHHHHHHHHhhcCCcCCc-CCHHHHHHHHHHHHhCC----C--CcCEEEE--eCCcHH
Confidence            6777766542  1222  2455666655544321 11223 22233444444444421    1  1256777  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH-hhC--------C----CCeEEEeccc--CCCCCC-C-------HHHH
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIF-NDA--------R----VPWSEYRYYD--PKTVGL-D-------FEGM  219 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~-~~~--------G----~~~~~v~~~~--~~~~~~-d-------~~~l  219 (363)
                      |.+.+..+.+.+....+|+...-+|.+..... ...        +    -.+..++..+  ...++. +       .+.+
T Consensus       692 A~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l  771 (1013)
T PRK06148        692 ANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESV  771 (1013)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHH
Confidence            99999776655544467888888776553211 111        1    0111111100  001111 1       1345


Q ss_pred             HHHHH---cCCCCcEEEEEcCCCCCCC-CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCe
Q 017967          220 IADIK---AAPGGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (363)
Q Consensus       220 ~~~l~---~~~~~~~~~~i~~p~NPTG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~  295 (363)
                      ++.+.   ..++....+++-.-+---| ...+.+-++++.++|+++|+++|.||+..+|.-.+.  ..+....+ +-.++
T Consensus       772 ~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~--~~~a~e~~-gv~PD  848 (1013)
T PRK06148        772 AEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGS--HWWAFETQ-GVVPD  848 (1013)
T ss_pred             HHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCC--cchhhhhc-CCCcc
Confidence            55443   2223344444332222224 356788899999999999999999999988843221  12222222 22234


Q ss_pred             EEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhh-ccccCCCchHHHHHHhccc
Q 017967          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA-RPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       296 vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~-~~~~~~~s~~~q~~~~~~l  356 (363)
                      +   -.|+|.+| .|+-+|.+  ++. ++    +.+.+..-. -...++-++++-.++...|
T Consensus       849 i---vt~gK~lg-gG~Plgav--~~~-~e----i~~~~~~g~~~~~Tf~gnpla~aaa~a~L  899 (1013)
T PRK06148        849 I---VTMGKPIG-NGHPMGAV--VTT-RE----IADSFDNGMEYFNTFGGNPVSCAIGLAVL  899 (1013)
T ss_pred             e---eeeccccc-CCcceEEE--EEc-HH----HHhhccCCCccccCCCCCHHHHHHHHHHH
Confidence            4   34599998 89999999  665 66    444433211 1123344555555444433

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.17  E-value=0.0004  Score=65.89  Aligned_cols=220  Identities=17%  Similarity=0.095  Sum_probs=132.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHH-HHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNK-VTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~-aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .+||++--.-.+..|-..+.+.+.++...+........|.-..|...-|- .+++.+.+-.    ..+.+++  ++..+.
T Consensus        21 ~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~----~aea~~i--vnnn~a   94 (395)
T COG1921          21 RVINAIGTVLMTNLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLT----GAEAAAI--VNNNAA   94 (395)
T ss_pred             hhhhhhhhheeccCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhccc----chhheee--ECCcHH
Confidence            45555432222334445566777777777765544455644444433332 3344432321    1345555  677777


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcC-----CCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcC
Q 017967          163 SLRLAAALIERYFPGAKVLISS-----PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~-----P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~  237 (363)
                      |+.++   +..+.++..|++..     ++-++...+++..|++++++-.    .......+++.++.+  +...++-+.+
T Consensus        95 AVll~---~~al~~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~----tn~t~~~d~~~AIne--~ta~llkV~s  165 (395)
T COG1921          95 AVLLT---LNALAEGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGT----TNRTHLKDYELAINE--NTALLLKVHS  165 (395)
T ss_pred             HHHHH---HhhhccCCeEEEEccccccCCCCChhHHHHHcCCEEEEecc----cCcCCHHHHHHHhcc--CCeeEEEEee
Confidence            76666   33444454444332     5778889999999999999964    234678899999985  3344444445


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       238 p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                      +|.+--..++.   ++++++|+++|+++++|.+-......     .+..+.++..+. .++++|--|.+|  |-|-|.+ 
T Consensus       166 ~~~~f~~~l~~---~~l~~ia~~~~lpvivD~aSg~~v~~-----e~~l~~~la~Ga-DLV~~SgdKllg--GPqaGii-  233 (395)
T COG1921         166 SNYGFTGMLSE---EELVEIAHEKGLPVIVDLASGALVDK-----EPDLREALALGA-DLVSFSGDKLLG--GPQAGII-  233 (395)
T ss_pred             ccccccccccH---HHHHHHHHHcCCCEEEecCCcccccc-----ccchhHHHhcCC-CEEEEecchhcC--CCccceE-
Confidence            55433334444   45666799999999999995444321     224444444443 356778899987  8888988 


Q ss_pred             EeeCChhHHHHHHHH
Q 017967          318 VVCSSSDLAARVKSQ  332 (363)
Q Consensus       318 ~v~~~~~~~~~~~~~  332 (363)
                       ++ .+++++++.++
T Consensus       234 -~G-kKelI~~lq~~  246 (395)
T COG1921         234 -VG-KKELIEKLQSH  246 (395)
T ss_pred             -ec-hHHHHHHHHhh
Confidence             55 58866665554

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=98.14  E-value=0.00024  Score=66.71  Aligned_cols=175  Identities=15%  Similarity=0.213  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecc
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY  207 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~  207 (363)
                      .-+|.+.+|++ .++      +.-+++..+-.++.+   ....+....||-.|+-.+-.....+.-++..|++-..+.  
T Consensus       218 hv~LE~eLA~L-HqK------~aALlFsSCfVANDs---tLftLak~lpgcei~SD~gNHASMI~GIrns~v~K~IFr--  285 (570)
T KOG1360|consen  218 HVRLEAELADL-HQK------EAALLFSSCFVANDS---TLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFR--  285 (570)
T ss_pred             hhhHHHHHHHH-hcC------cceeeeeeeeeccch---HHHHHHHHCCCcEEeccccchHHHHHHhhhcCCcceeec--
Confidence            35788888887 343      233333112223333   211244455887777666555555655666666544443  


Q ss_pred             cCCCCCCCHHHHHHHHHcCC-CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC---Cch
Q 017967          208 DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD---NDA  283 (363)
Q Consensus       208 ~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~---~~~  283 (363)
                           .-|++.|++.++..+ ..++++-.-..|.=+|.+-+.   ++|.+++.+||.+.++||+..--.|++.-   .+.
T Consensus       286 -----HND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcpl---eelcDvah~yGAiTFlDEVHAVGlYG~rGaGvger  357 (570)
T KOG1360|consen  286 -----HNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPL---EELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGER  357 (570)
T ss_pred             -----cCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCH---HHHHHHHHHhCceeeeehhhhhccccCCCCCcccc
Confidence                 247899999888733 456777778889999988765   55778899999999999996533333210   001


Q ss_pred             hHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhh
Q 017967          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA  337 (363)
Q Consensus       284 ~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~  337 (363)
                      ..+     ...-.|+.+++.|.||+-|   |||   +....    +++.++.+.
T Consensus       358 dGv-----m~kvDiIsGTLgKafGcVG---GYI---Aat~~----LvDmiRSyA  396 (570)
T KOG1360|consen  358 DGV-----MHKVDIISGTLGKAFGCVG---GYI---AATRK----LVDMIRSYA  396 (570)
T ss_pred             CCc-----chhhhhcccchhhhccccc---cee---hhhhh----HHHHHHHhc
Confidence            111     1123477899999999877   888   55566    555555444

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=98.13  E-value=5.5e-05  Score=72.63  Aligned_cols=175  Identities=10%  Similarity=-0.074  Sum_probs=102.4

Q ss_pred             CCccccHHHHHHHHHHHccCC-CCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEec-cchhHHHHHHHHHHHH
Q 017967           98 LQPYVLDVVKKAENLMLERGE-NKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQG-LSGTGSLRLAAALIER  173 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~-~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t-~ggt~al~l~~~l~~~  173 (363)
                      |+..+++.+.+++.+....-. ..++.+  ..-..+.|+.+++++...     ++.+|++  + .+||.+++.+  +..+
T Consensus        10 GP~~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~-----~~~~v~f--~~gs~T~a~~~~--~~~l   80 (361)
T TIGR01366        10 GPSKVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLP-----DGYEVIL--GNGGATAFWDAA--TFGL   80 (361)
T ss_pred             CCcCCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCC-----CCceEEE--ECCchhHHHHHH--HHhc
Confidence            556678888888654210000 012222  234567788888886542     1346655  5 5599999988  4444


Q ss_pred             hCCCCEEEEcCCCCc-chHHHHhhC--CCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHH
Q 017967          174 YFPGAKVLISSPTWG-NHKNIFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ  250 (363)
Q Consensus       174 ~~~gd~Vlv~~P~y~-~~~~~~~~~--G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~  250 (363)
                      +.+ +.+.+..-.|. .+...++..  +.++..++..  ++..++.     .+.   ++++++.+++..|.||...+.++
T Consensus        81 ~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~-----~~~---~~~~lV~~~h~et~tG~~~pi~~  149 (361)
T TIGR01366        81 IEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTAD--PGSAPEP-----QAD---PGVDVIAWAHNETSTGVAVPVRR  149 (361)
T ss_pred             ccc-cccEEecCHHHHHHHHHHHhhhccCCceEEecC--CCCCCCC-----ccC---CCCCEEEEcccCCccceeccccc
Confidence            432 33333333332 334444432  2266666652  2223332     122   35678888999999999999766


Q ss_pred             HHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc
Q 017967          251 WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (363)
Q Consensus       251 ~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G  310 (363)
                      +      ++++|+++|+|.+ +.+.....     .+.    .  -.+++.|--|.+|.+|
T Consensus       150 I------~~~~g~~~iVDav-qs~g~~~i-----dv~----~--~D~~~~s~~K~lg~~~  191 (361)
T TIGR01366       150 P------EGSDDALVVIDAT-SGAGGLPV-----DIA----E--TDVYYFAPQKNFASDG  191 (361)
T ss_pred             c------cccCCCeEEEEcC-ccccCCCC-----CHH----H--CCEEEEEchhhcCCCC
Confidence            4      5789999999999 55443321     111    1  2357788899999875

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.11  E-value=0.00013  Score=76.71  Aligned_cols=178  Identities=17%  Similarity=0.125  Sum_probs=109.9

Q ss_pred             CCCCC---CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh--CCC----CEEEEcCCCCcch
Q 017967          120 KEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FPG----AKVLISSPTWGNH  190 (363)
Q Consensus       120 ~~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~--~~g----d~Vlv~~P~y~~~  190 (363)
                      +-|.|   .+|.-++...+.+++....|.    +.+ .++-.+|+.+-......++.+  .+|    ++|+|+.-.+...
T Consensus       530 hPyqp~e~sQG~lq~i~elq~~l~eLtGm----d~~-Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtN  604 (954)
T PRK12566        530 HPFAPREQAEGYRAMIDELEAWLCAITGF----DAI-CMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTN  604 (954)
T ss_pred             CCCCchhhhcCHHHHHHHHHHHHHHHHCC----CeE-eecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccC
Confidence            45666   677766666655555443333    222 233445555543332223322  122    5788888777554


Q ss_pred             HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecC
Q 017967          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (363)
Q Consensus       191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~  270 (363)
                      ...+...|++++.++++  .++.+|+++|++.+.+...+.+.+.+.+|++=.  ++ .+++++|.++++++|..+++|.+
T Consensus       605 pasa~~~GieVv~Vp~D--~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~G--v~-e~~V~eI~~iah~~Galv~vDgA  679 (954)
T PRK12566        605 PASAQMAGMRVVIVECD--PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHG--VY-EEGIREICEVVHQHGGQVYMDGA  679 (954)
T ss_pred             HHHHHHCCCEEEEeccC--CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCc--ee-cchHHHHHHHHHHcCCEEEEEee
Confidence            55678899999999985  357899999999997544556667666665443  33 56789999999999999999999


Q ss_pred             CCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc----ccccceEE
Q 017967          271 YQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL----YAERIGAM  316 (363)
Q Consensus       271 y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l----~G~RvG~i  316 (363)
                      .. .......    ..    ....-.++..++.|.|+.    .|.-+|.+
T Consensus       680 ~~-~a~~~l~----~P----g~~GADi~~~s~HKtf~~P~G~GGP~vG~i  720 (954)
T PRK12566        680 NL-NAQVGLA----RP----ADIGADVSHMNLHKTFCIPHGGGGPGMGPI  720 (954)
T ss_pred             Ch-hhccCCC----Ch----hhcCCCEEEecCCcccCcCccCCCCccchh
Confidence            53 2211110    11    112345778888887752    24445655

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.05  E-value=0.00046  Score=68.12  Aligned_cols=149  Identities=12%  Similarity=0.087  Sum_probs=85.8

Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhC------CC------CEEEEcCCCCcchHHHHh-hCCCCe-----------EEEe
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYF------PG------AKVLISSPTWGNHKNIFN-DARVPW-----------SEYR  205 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~------~g------d~Vlv~~P~y~~~~~~~~-~~G~~~-----------~~v~  205 (363)
                      +++.+  +++|++|.+.+..+...+.      .|      .+|+...-+|.+....+. ..|...           ..++
T Consensus       111 ~~v~f--~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~  188 (443)
T PRK08297        111 PHLFF--VDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRID  188 (443)
T ss_pred             CEEEE--eCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccC
Confidence            68877  9999999999976654331      12      568888888866543222 211100           0011


Q ss_pred             ccc---C-CCCC---------CCHHHHHHHHHcCCCCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCC
Q 017967          206 YYD---P-KTVG---------LDFEGMIADIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAY  271 (363)
Q Consensus       206 ~~~---~-~~~~---------~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y  271 (363)
                      ...   + ....         -+++.+++.+.+.++....+++-.-+---|. ..+.+-+++|.++|++||+++|.||++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~  268 (443)
T PRK08297        189 NPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQ  268 (443)
T ss_pred             CCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence            000   0 0000         0245566667654444555554333333354 477899999999999999999999999


Q ss_pred             CCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          272 QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                      .+|...+   ..+....+ +-.++++   .|+|.++
T Consensus       269 tGfGRtG---~~~a~~~~-gv~PDiv---~~gK~l~  297 (443)
T PRK08297        269 TGVGLTG---TAWAYQQL-GVRPDIV---AFGKKTQ  297 (443)
T ss_pred             hccCccc---hHHHHHhc-CCCCCEE---Eeccccc
Confidence            9885432   12222222 2234444   3689874

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=98.00  E-value=0.00019  Score=69.06  Aligned_cols=141  Identities=17%  Similarity=0.200  Sum_probs=92.2

Q ss_pred             EeccchhHHHHHHHHHHHHh-CCCCEEEEcCCCCcch-H-HHHhhCCC-CeEEEecccCCCCCCCHHHHHHHHHcCCCCc
Q 017967          155 VQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNH-K-NIFNDARV-PWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~-~~gd~Vlv~~P~y~~~-~-~~~~~~G~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (363)
                      ..+.+||++++.+  +.+++ .+||+|++.. .|+.- . ++++..|+ ++..+..  +.+..+++++++.  .    +.
T Consensus        62 ~l~GsGT~a~Eaa--~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~--~~g~~~~~~~ve~--~----~~  130 (374)
T TIGR01365        62 IVPASDTGAVEMA--LWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEA--EYGKLPDLKKVDF--K----ND  130 (374)
T ss_pred             EECCchHHHHHHH--HHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcC--CCCCCCCHHHcCC--C----CC
Confidence            3489999999988  67777 4899999876 55433 4 78889999 4777764  4567889998873  1    22


Q ss_pred             EEEEEcCCCCCCCCCCCHHHHHHHHHHHHh-cCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       231 ~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                       + ++++....||+..+.+   ++   +++ ++.++|+|.+ +.+...+.     .+    +  .-.+++.|--|.+++|
T Consensus       131 -v-~~vhnETSTGv~npv~---~i---~~~~~~~lliVDav-Ss~g~~~l-----~~----d--~iDv~~tgsQK~L~~p  190 (374)
T TIGR01365       131 -V-VFTWNGTTSGVRVPNG---DF---IPADREGLTICDAT-SAAFAQDL-----DY----H--KLDVVTFSWQKVLGGE  190 (374)
T ss_pred             -E-EEecCCCchheecccc---cc---ccccCCCcEEEEcc-chhcCCCC-----Ch----h--HCcEEEEechhccCCC
Confidence             2 3455556789988764   33   333 5899999999 44443321     11    1  1335566669999886


Q ss_pred             cccceEEEEeeCChhHHHHHH
Q 017967          310 AERIGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       310 G~RvG~i~~v~~~~~~~~~~~  330 (363)
                      +- ++++  +.+ ++.+++..
T Consensus       191 pG-ls~v--~vs-~~Al~~~~  207 (374)
T TIGR01365       191 GA-HGML--ILS-PRAVARLE  207 (374)
T ss_pred             Cc-eEEE--EEC-HHHHHHHh
Confidence            53 4555  554 66555443

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK05367 glycine dehydrogenase; Provisional

Probab=97.97  E-value=0.00052  Score=73.37  Aligned_cols=186  Identities=10%  Similarity=0.060  Sum_probs=113.8

Q ss_pred             EeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCc-----ch----HHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE-----GL----AAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~-----G~----~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      -++.|.|.     .+.+..+.+.+..  .++....|.|.+     |.    .+++..++++..-      +..++.+  +
T Consensus        80 ~ig~G~y~-----~~~P~vi~~~i~~--~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~------~~anaSl--~  144 (954)
T PRK05367         80 YIGQGYYG-----THTPPVILRNILE--NPAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGL------EIANASL--L  144 (954)
T ss_pred             ccCCCCCC-----CcCcHHHHHHHHh--CcchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCC------Chhhccc--c
Confidence            46777773     2445555443322  234446677643     43    3456666776422      2577766  8


Q ss_pred             cchhHHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHH----hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcE
Q 017967          158 LSGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~--gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                      .++|.+.+.+...+. ..+  +++|+|++-.|+.....+    +..|++++.++..+      |.+      .   ++..
T Consensus       145 d~aTAa~ea~~~a~~-~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~------d~~------~---~~~~  208 (954)
T PRK05367        145 DEATAAAEAMALAKR-VSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK------ALD------H---DDVF  208 (954)
T ss_pred             ccHHHHHHHHHHhhh-hccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc------CCC------c---ccEE
Confidence            899999887743332 345  489999999998887654    56899999998732      111      1   2344


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccc-----c
Q 017967          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-----L  306 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~-----~  306 (363)
                      .+++.+| |-+|...   ++++|++.|+++|.++++|-.-..+.-..      +.   .+.+ -.|++++.-|.     |
T Consensus       209 ~vlvq~p-~~~G~i~---d~~~i~~~ah~~Gal~~vda~~~Al~~l~------~p---ge~G-aDi~vgs~qkfg~P~g~  274 (954)
T PRK05367        209 GVLLQYP-GTSGEVR---DYTALIAAAHARGALVAVAADLLALTLLT------PP---GEMG-ADIAVGSAQRFGVPMGF  274 (954)
T ss_pred             EEEEecC-CCCeeec---cHHHHHHHHHHcCCEEEEEehhhhccCCC------Ch---hhcC-CCEEEeeCcccCCCCCC
Confidence            5555565 7899987   47788888999999999986432222210      11   1222 23555555675     5


Q ss_pred             ccccccceEEEEeeC
Q 017967          307 GLYAERIGAMNVVCS  321 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~  321 (363)
                      |-||  .|++  .+.
T Consensus       275 GGP~--aGfl--avr  285 (954)
T PRK05367        275 GGPH--AAYF--AVR  285 (954)
T ss_pred             CCCC--EEEE--EEC
Confidence            5454  7888  554

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=97.88  E-value=0.00027  Score=63.85  Aligned_cols=212  Identities=14%  Similarity=0.034  Sum_probs=116.6

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHcc--------CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEE
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--------~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      ..++||..+.|.....+    |.+.++....++.        ....+|  ..-+..|...+|+| .++       ++.++
T Consensus        67 k~ilnFcaNnYLGLssh----Peii~a~~~aleeyGaGlssvrfIcGt--q~iHk~LE~kiAqf-h~r-------ED~il  132 (417)
T KOG1359|consen   67 KKILNFCANNYLGLSSH----PEIINAGQKALEEYGAGLSSVRFICGT--QDIHKLLESKIAQF-HGR-------EDTIL  132 (417)
T ss_pred             cceeeecccccccccCC----hHHHHHHHHHHHHhCCCccceeEEecc--hHHHHHHHHHHHHH-hCC-------CceEE
Confidence            37889998887544333    3444444444421        011122  12346677788888 343       33333


Q ss_pred             EeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCC-CcEEE
Q 017967          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG-GSFIL  233 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~  233 (363)
                        .+.+-.|..-+  +-.++.|.|.|+-.+........-++..     . .     -...|+-.++..+.++.+ +-+++
T Consensus       133 --ypscfdANag~--feail~pedAvfSDeLNhASIIdGirLc-----k-r-----y~h~dv~~l~~~l~~a~k~r~klv  197 (417)
T KOG1359|consen  133 --YPSCFDANAGA--FEAILTPEDAVFSDELNHASIIDGIRLC-----K-R-----YRHVDVFDLEHCLISACKMRLKLV  197 (417)
T ss_pred             --eccccccchHH--HHHhcChhhhhhccccccchhhhhhHHH-----h-h-----hccchhHHHHHHHHHhhhheEEEE
Confidence              46555553223  4445667777776554443333222211     1 1     124566667766554332 33344


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH-hcCCeEEEEEcCcccccccccc
Q 017967          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAER  312 (363)
Q Consensus       234 ~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~~l~G~R  312 (363)
                      +.-..-.=.|-..+   +++|.+++++||.++++||+..-+.++..   .....+.. -.++-.++.++++|.+|  |.-
T Consensus       198 ~TDg~FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~t---GrGt~E~~~vm~~vdiinsTLgKAlG--ga~  269 (417)
T KOG1359|consen  198 VTDGVFSMDGDIAP---LEEISQLAKKYGALLFIDECHATGFFGET---GRGTAEEFGVMGDVDIINSTLGKALG--GAS  269 (417)
T ss_pred             EecceeccCCCccc---HHHHHHHHHhcCcEEEEeecccceeecCC---CCChHHHhCCCCcceehhhhhhhhhc--CCC
Confidence            43333344566655   55566779999999999999877766531   11222222 24566777889999997  555


Q ss_pred             ceEEEEeeCChhHHHHHHHHHHhhhc
Q 017967          313 IGAMNVVCSSSDLAARVKSQLKRLAR  338 (363)
Q Consensus       313 vG~i~~v~~~~~~~~~~~~~l~~~~~  338 (363)
                      -||.  .+| +.    +++-++.-.+
T Consensus       270 GGyt--tgp-~~----li~llrqr~R  288 (417)
T KOG1359|consen  270 GGYT--TGP-KP----LISLLRQRSR  288 (417)
T ss_pred             CCCc--cCC-hh----HHHHHHhcCC
Confidence            6999  565 55    4554544443

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=97.83  E-value=0.00039  Score=66.07  Aligned_cols=139  Identities=16%  Similarity=0.175  Sum_probs=100.7

Q ss_pred             CCCCC---CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC--CC----CEEEEcCCCCcch
Q 017967          120 KEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--PG----AKVLISSPTWGNH  190 (363)
Q Consensus       120 ~~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~--~g----d~Vlv~~P~y~~~  190 (363)
                      +-|.|   .+|..++...+.+||....|.    +.|.+ |-+.|.++-.....++..+.  .|    +.|+||+-.+...
T Consensus        96 HP~~pe~~vqG~l~li~~Lq~~L~~ITG~----DavsL-QP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTN  170 (496)
T COG1003          96 HPFQPEEQVQGYLELIYELQEWLKEITGM----DAVSL-QPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTN  170 (496)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHhcCC----ceeec-cCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCC
Confidence            44544   568888888899998665544    34433 44444444333322333332  34    5799999999999


Q ss_pred             HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecC
Q 017967          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (363)
Q Consensus       191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~  270 (363)
                      ...+...|.+|+.|+++  +++.+|+++|++++.   ++...+.++|||   ..-+=++.+++|+++..++|-.+..|.+
T Consensus       171 PASAam~G~~VV~V~~~--~~G~VDlddLk~k~~---~~~AalMiTnPs---T~GvFE~~I~ei~~ivH~~Gg~vY~DGA  242 (496)
T COG1003         171 PASAAMAGFKVVVVKCD--ENGNVDLDDLRAKAE---DNLAALMITNPS---TLGVFEEDIREICEIVHEAGGQVYYDGA  242 (496)
T ss_pred             hhhHhhcCceEEEEecC--CCCCccHHHHHHHhc---cceeEEEeccCc---ccccchhhHHHHHHHHHHcCCEEEecCc
Confidence            99999999999999994  568899999999988   345555556553   3334478999999999999999999988


Q ss_pred             C
Q 017967          271 Y  271 (363)
Q Consensus       271 y  271 (363)
                      -
T Consensus       243 N  243 (496)
T COG1003         243 N  243 (496)
T ss_pred             c
Confidence            4

>PLN02452 phosphoserine transaminase

Probab=97.79  E-value=0.0011  Score=63.69  Aligned_cols=199  Identities=12%  Similarity=0.027  Sum_probs=108.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHH-ccC-------CCCCCCCC--cchHHHHHHHHHHHhcCCCCcccCCcEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERG-------ENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVA  153 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~~-------~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~  153 (363)
                      .+++|+.       |+..+++.|.+++.+.+ +-.       ...++.+.  .-..+.++.+.+++    +.+ +..+|+
T Consensus         7 ~~~~f~p-------GP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~----~~p-~~y~v~   74 (365)
T PLN02452          7 RVFNFSA-------GPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELL----DIP-DNYEVL   74 (365)
T ss_pred             ceEeeeC-------CCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHh----CCC-CCceEE
Confidence            4677774       44667778887776543 100       00112111  12233444444443    221 012343


Q ss_pred             EEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHHhhCCCCeEEEecc-cCCCCCCCHHHHHHHHHcCCCCc
Q 017967          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGS  230 (363)
Q Consensus       154 ~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~  230 (363)
                      + ...|||++++.+  +.+++.+||++++..-+..+-  ...+++.|...+..... .....-++++++    +..+ ..
T Consensus        75 ~-l~Gsgt~~~ea~--~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~  146 (365)
T PLN02452         75 F-LQGGASTQFAAI--PLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----ELTP-DA  146 (365)
T ss_pred             E-EeCccHHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----CCCC-CC
Confidence            3 478899998888  677778999988887666443  44667888744444221 111124566654    2222 34


Q ss_pred             EEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc
Q 017967          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (363)
Q Consensus       231 ~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G  310 (363)
                      ..+.+++....||+.+.  ++.++.      ++++|+|.+ +.+...+.     .+..     -.+++ .|--|.+|.+|
T Consensus       147 ~~v~~~hnETstGv~~~--~~~~i~------~~~lvVDa~-Ss~g~~pi-----dv~~-----~~v~~-~saqK~lGP~G  206 (365)
T PLN02452        147 KFVHICANETIHGVEFK--DYPDVG------NVPLVADMS-SNFLSKPV-----DVSK-----YGVIY-AGAQKNVGPSG  206 (365)
T ss_pred             cEEEECCCCCCCcEecC--cccccC------CCeEEEECC-ccccCccc-----CHHH-----cCEEE-EecccccCCCC
Confidence            45665666678898643  233332      379999999 55443321     2211     13444 58899999998


Q ss_pred             ccceEEEEeeCChhHHH
Q 017967          311 ERIGAMNVVCSSSDLAA  327 (363)
Q Consensus       311 ~RvG~i~~v~~~~~~~~  327 (363)
                        +|.+  +.. ++.++
T Consensus       207 --l~~v--~vr-~~~l~  218 (365)
T PLN02452        207 --VTIV--IIR-KDLIG  218 (365)
T ss_pred             --eEEE--EEc-HHHHh
Confidence              4777  554 55433

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=97.79  E-value=0.0035  Score=61.72  Aligned_cols=126  Identities=12%  Similarity=0.074  Sum_probs=77.9

Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhC------C------CCEEEEcCCCCcchHHHHh-hCCCC-eE------------E
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYF------P------GAKVLISSPTWGNHKNIFN-DARVP-WS------------E  203 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~------~------gd~Vlv~~P~y~~~~~~~~-~~G~~-~~------------~  203 (363)
                      +++.+  +++|++|.+.+..+...+.      .      +.+|+...-+|.+...... ..|.. ..            .
T Consensus       104 ~~v~f--~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~  181 (431)
T TIGR03251       104 PHLFF--IEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRID  181 (431)
T ss_pred             CEEEE--eCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCC
Confidence            57777  9999999999876655441      1      3678888888866543221 11211 00            0


Q ss_pred             Eecc----cCCCCC-------CCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCC
Q 017967          204 YRYY----DPKTVG-------LDFEGMIADIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAY  271 (363)
Q Consensus       204 v~~~----~~~~~~-------~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y  271 (363)
                      .|..    +.....       -+++.+++.+...++....+++-.-+.-.|.. .+.+-+++|.++|++||+++|+||++
T Consensus       182 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~  261 (431)
T TIGR03251       182 NPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQ  261 (431)
T ss_pred             CCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecch
Confidence            1100    000000       12445555665444555666655555556654 57899999999999999999999999


Q ss_pred             CCCcCC
Q 017967          272 QGFASG  277 (363)
Q Consensus       272 ~~~~~~  277 (363)
                      .+|...
T Consensus       262 tG~Grt  267 (431)
T TIGR03251       262 TGVGLT  267 (431)
T ss_pred             hccCcc
Confidence            988654

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=97.70  E-value=0.0061  Score=60.36  Aligned_cols=125  Identities=19%  Similarity=0.228  Sum_probs=77.7

Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhC------------------------CC---CEEEEcCCCCcchHHHHh-hCCC--
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYF------------------------PG---AKVLISSPTWGNHKNIFN-DARV--  199 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~------------------------~g---d~Vlv~~P~y~~~~~~~~-~~G~--  199 (363)
                      +++.+  +++|++|.+.+..+...+.                        +|   .+|+...-+|.+...... ..|-  
T Consensus       123 ~~v~f--~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~  200 (464)
T TIGR00699       123 DQVWT--GMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKP  200 (464)
T ss_pred             CEEEE--eCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCcc
Confidence            57877  9999999999976654331                        11   268888888866533221 1111  


Q ss_pred             ---------CeEEEecccCC-CC-----------CCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCC-CHHHHHHHHHH
Q 017967          200 ---------PWSEYRYYDPK-TV-----------GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADV  257 (363)
Q Consensus       200 ---------~~~~v~~~~~~-~~-----------~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~-s~~~~~~i~~~  257 (363)
                               .+..+|..... .+           .-+++.+++.+...+.....+++-.-+.-.|... +.+-+++|.++
T Consensus       201 ~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~l  280 (464)
T TIGR00699       201 IHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDI  280 (464)
T ss_pred             ccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHH
Confidence                     11112211000 00           0135667777764434455555544455557766 67889999999


Q ss_pred             HHhcCCeEEEecCCCCCcC
Q 017967          258 IQEKNHIPFFDVAYQGFAS  276 (363)
Q Consensus       258 ~~~~~~~ii~De~y~~~~~  276 (363)
                      |+++|+++|.||+..+|..
T Consensus       281 c~~~g~lLI~DEV~tGfGr  299 (464)
T TIGR00699       281 TKKHNVAFIVDEVQTGVGA  299 (464)
T ss_pred             HHHcCCEEEEeeeeeCCCC
Confidence            9999999999999988854

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00026  Score=67.49  Aligned_cols=234  Identities=14%  Similarity=0.109  Sum_probs=127.3

Q ss_pred             CcEEeeccccCCCCCCc-cccHHHHHHHHHHHcc--CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccc-
Q 017967           84 KKLNLGVGAYRTEELQP-YVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS-  159 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~-~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g-  159 (363)
                      ..+||+.=.|....... +-.+.+.+++......  +...+-+...-+.++.+.+|+|+..       ++-+++  ..| 
T Consensus       137 ~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~-------e~a~vF--~mGf  207 (519)
T KOG1357|consen  137 RCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGV-------EDAIVF--SMGF  207 (519)
T ss_pred             eeeeecccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCC-------cceEEE--eccc
Confidence            46677654442211111 1234555555443311  1112222333456777888888543       355555  222 


Q ss_pred             hhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc---------C-CCC
Q 017967          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---------A-PGG  229 (363)
Q Consensus       160 gt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---------~-~~~  229 (363)
                      +|.+  +.  +-.+++||.-|+-.+-.......-++..|+.++.+.-+       |...||+.|++         + |-+
T Consensus       208 ~TNs--~~--~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-------dm~~LEr~Lrd~I~~gqP~Thrp~k  276 (519)
T KOG1357|consen  208 ATNS--MN--IPSLLGKGSLIISDELNHASLITGARLSGATTRVFRHN-------DMQGLERLLRDAIVYGQPKTHRPWK  276 (519)
T ss_pred             cccc--cC--cceeecCCcceeeccccchheeccccccCceEEEEecC-------CHHHHHHHHHHHHhcCCCCcCCcch
Confidence            2323  22  23446677777766666666665667778887777642       56777777765         1 222


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH--HhcCCeEEEEEcCccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF--ATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~~~vi~~~S~SK~~~  307 (363)
                      +.++++-.--.=-|.   ..++.+++.+++++..+++.||+..-=.-+.   ....+-.+  .+..+..|-.+.|+|+||
T Consensus       277 ki~iivegiysmEg~---iv~Lp~vvalkkkykayl~lDEAHSiGA~g~---tGrgvce~~g~d~~dvDImMGtftKSfg  350 (519)
T KOG1357|consen  277 KILICVEGIYSMEGT---IVDLPEVVALKKKYKAYLYLDEAHSIGAMGA---TGRGVCEYFGVDPEDVDIMMGTFTKSFG  350 (519)
T ss_pred             heeeeeccceeccCe---ecccHHHHHhhccccEEEEeeccccccccCC---CCcceeeccCCCchhheeecceehhhcc
Confidence            333332222212233   3467778888999999999999975433221   11122222  123355677899999999


Q ss_pred             cccccceEEEEeeCChhHHHHHHHHHHhhhcc---ccCCCchHHHHHHh
Q 017967          308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARP---MYSNPPPMLLGIQL  353 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~---~~~~~s~~~q~~~~  353 (363)
                      ..|   ||+   +.+++    +++.++.....   ..+.+++..|.++.
T Consensus       351 a~G---Gyi---agsk~----lid~lrt~s~~~~yat~~sppvaqq~~s  389 (519)
T KOG1357|consen  351 AAG---GYI---AGSKE----LIDYLRTPSPSALYATSLSPPVAQQILT  389 (519)
T ss_pred             ccc---cee---cCcHH----HHhhhccCCCceeecccCChHHHHHHHH
Confidence            776   888   55576    56655544322   23345666666654

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=97.61  E-value=8.4e-05  Score=69.86  Aligned_cols=156  Identities=19%  Similarity=0.236  Sum_probs=36.9

Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCC---Cc---chHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCc
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPT---WG---NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~---y~---~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (363)
                      +++...|+.++   +..+.+|..|+|..=-   +.   ...++++..|+++++|-..    ....++++++++++   ++
T Consensus        68 vNnnaAAv~L~---l~~la~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt----N~t~~~Dye~AI~e---~T  137 (367)
T PF03841_consen   68 VNNNAAAVLLA---LNTLAKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT----NRTHLSDYEKAITE---NT  137 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccc---ccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccc---cc
Confidence            56667776665   4445577777766522   22   2455777899999999752    24567888999984   45


Q ss_pred             EEEEEcCCCCC--CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCC---cCCCCCCchhHHHHHHhcCCeEEEEEcCccc
Q 017967          231 FILLHGCAHNP--TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF---ASGSLDNDASSVRLFATRGMELLVAQSYSKN  305 (363)
Q Consensus       231 ~~~~i~~p~NP--TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~---~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~  305 (363)
                      .+++-.+++|-  .|.+-.. .++++++++++|++++++|-.-..+   ...+. ++.+.+..++..+-+ ++++|=-|.
T Consensus       138 a~ll~Vh~Sn~~i~GFt~~~-~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl-~~Ep~v~~~~~~GaD-lV~fSGdKl  214 (367)
T PF03841_consen  138 AALLKVHTSNFRIQGFTGEV-SLEELAELAKEHGLPVIVDLGSGLLVDLSPYGL-PDEPTVQEYLAAGAD-LVTFSGDKL  214 (367)
T ss_dssp             ------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCCCT-S-EEEEETTSS
T ss_pred             cccccccccccccccccccc-cHHHHHHHHhhcCCcEEEECCCCCCcCcccccC-ccccHHHHHhhcCCC-EEEEECCCc
Confidence            55555566665  3544333 6788888999999999999883111   10001 123345554444434 557777999


Q ss_pred             cccccccceEEEEeeCChhHHHHHH
Q 017967          306 LGLYAERIGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       306 ~~l~G~RvG~i~~v~~~~~~~~~~~  330 (363)
                      +|  |=..|.+  ++. ++.+++++
T Consensus       215 LG--GPQaGiI--~Gk-k~lI~~lk  234 (367)
T PF03841_consen  215 LG--GPQAGII--VGK-KELIEKLK  234 (367)
T ss_dssp             SS--S-S-EEE--EEE-HHHHHHHH
T ss_pred             CC--CCCeEEE--EeC-HHHHHHHh
Confidence            98  6667998  655 77555443

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=97.61  E-value=0.013  Score=55.68  Aligned_cols=228  Identities=14%  Similarity=0.121  Sum_probs=126.1

Q ss_pred             HHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHcc-C-CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcE
Q 017967           75 EAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV  152 (363)
Q Consensus        75 ~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i  152 (363)
                      ..++.+.+ ..||+..+.-....++.  -|.+.+++.+.... . ....|.... .-++.+.+.+.+    +.. ..++|
T Consensus        49 kl~D~~g~-EyiD~~ssw~~~~~Gha--npev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~----~~~-~~~rv  119 (433)
T KOG1401|consen   49 KLFDPDGK-EYIDFTSSWAVTILGHA--NPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVL----GKG-SAERV  119 (433)
T ss_pred             eeecCCcc-eeeeeccceeccccCCC--CHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHhcc----cCC-CccEE
Confidence            34444433 78888776533222322  45566655443322 1 112221111 223333333332    111 46899


Q ss_pred             EEEeccchhHHHHHHHHHHHHhC-C---CC--EEEEcCCCCcch-HHHHhhCCCCeEEEeccc-CCC----CCCCHHHHH
Q 017967          153 ATVQGLSGTGSLRLAAALIERYF-P---GA--KVLISSPTWGNH-KNIFNDARVPWSEYRYYD-PKT----VGLDFEGMI  220 (363)
Q Consensus       153 ~~~~t~ggt~al~l~~~l~~~~~-~---gd--~Vlv~~P~y~~~-~~~~~~~G~~~~~v~~~~-~~~----~~~d~~~l~  220 (363)
                      .+  .++||+|.+.+..+...+. .   -+  +|+...-+|.+- ...+...+......|.++ ..+    .--|...++
T Consensus       120 ff--~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~  197 (433)
T KOG1401|consen  120 FF--CNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALE  197 (433)
T ss_pred             EE--ecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHH
Confidence            88  9999999999866654443 1   12  377777777443 333332232222222110 000    112689999


Q ss_pred             HHHHcCCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEE
Q 017967          221 ADIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (363)
Q Consensus       221 ~~l~~~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~  299 (363)
                      +.++.+......+++-.-+=--|.. .+++-+..|...|+++++++|.||+.-+|.--+   ..+....+ ...+++   
T Consensus       198 k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g---~~~a~e~~-~~~PDI---  270 (433)
T KOG1401|consen  198 KLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG---YGWAQEYF-GVTPDI---  270 (433)
T ss_pred             HHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccc---hHHHHHHh-CcCCcc---
Confidence            9998765444455543334344444 456778889999999999999999998875432   23333333 233333   


Q ss_pred             EcCccccccccccceEEEEeeCChh
Q 017967          300 QSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       300 ~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      ..+.|.++ .|+-+|..  +.. ++
T Consensus       271 ~t~aK~L~-gGlPigA~--~v~-~k  291 (433)
T KOG1401|consen  271 TTVAKPLG-GGLPIGAT--GVR-DK  291 (433)
T ss_pred             eeehhhcc-CCceeEEE--eeh-HH
Confidence            45689998 89999999  554 44

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=97.54  E-value=0.0019  Score=61.78  Aligned_cols=168  Identities=13%  Similarity=0.072  Sum_probs=91.3

Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEE-EcCCCCcc--hHHHHhhCCCCeEEEecccC--CCCCCCHHHHHHHHHcCCCCc
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVL-ISSPTWGN--HKNIFNDARVPWSEYRYYDP--KTVGLDFEGMIADIKAAPGGS  230 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vl-v~~P~y~~--~~~~~~~~G~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~~  230 (363)
                      ...|||++.+.+  .++++.+||+++ +..-++.+  +...++.+| ++..+.....  .+..++++.+    +..+ +.
T Consensus        73 l~GggT~~~ea~--~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~----~~~~-d~  144 (364)
T PRK12462         73 LQGGSSLQFSMI--PMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL----DWDA-RA  144 (364)
T ss_pred             EeccHHHHHHHH--HHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh----ccCC-CC
Confidence            467799998888  778888999655 44444422  344556777 5544432111  1234455554    2212 34


Q ss_pred             EEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc
Q 017967          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (363)
Q Consensus       231 ~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G  310 (363)
                      ..+.+|.-...||+.++        ++.+.++.++|+|.+ +.+...+.     .+..+      -++..|-=|++|.||
T Consensus       145 ~~v~~t~NETstGv~~~--------~~~~~~~~llvvD~s-S~~~s~pi-----d~~~~------dvi~agsQKnlgP~G  204 (364)
T PRK12462        145 PFRHYVSNETVEGLQFP--------DAAGLPDSPLIADMS-SDFMSRPF-----DVEAY------GMVYAHAQKNLGPAG  204 (364)
T ss_pred             cEEEEccCCCCceEecC--------cccccCCCeEEEEcC-chhhCCCC-----ChHHc------cEEEeeccccCCCCc
Confidence            45555555557788876        223346899999999 55443321     22211      355666699999888


Q ss_pred             ccceEEEEeeCChhHHHHHHHH------HHhh--hccccCCCchHHHHHHhccc
Q 017967          311 ERIGAMNVVCSSSDLAARVKSQ------LKRL--ARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       311 ~RvG~i~~v~~~~~~~~~~~~~------l~~~--~~~~~~~~s~~~q~~~~~~l  356 (363)
                      +  +.+  +.. ++.+++..+.      ++..  ...++..||.+.-+++...|
T Consensus       205 l--tvv--ivs-~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l  253 (364)
T PRK12462        205 V--TVA--IIR-RALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVL  253 (364)
T ss_pred             e--EEE--EEC-HHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHH
Confidence            6  444  444 5544433221      1111  12344466666666654443

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=97.49  E-value=0.019  Score=60.64  Aligned_cols=97  Identities=14%  Similarity=0.153  Sum_probs=62.8

Q ss_pred             HHHHHHHHc-----CCCCcEEEEEcCC--CCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH
Q 017967          217 EGMIADIKA-----APGGSFILLHGCA--HNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (363)
Q Consensus       217 ~~l~~~l~~-----~~~~~~~~~i~~p--~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  288 (363)
                      +.+++.+.+     .+++...++ ..|  +.--|..+ ++.-+++|.++|+++|+++|.||++.+|.-.+   ..+... 
T Consensus       567 ~~le~~l~~~~~~~~~~~iAAvI-~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG---~~fa~e-  641 (817)
T PLN02974        567 SYIEQQLDEYEASAKNGHIAALI-IEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLG---VESAWE-  641 (817)
T ss_pred             HHHHHHHHhhccccCCCCEEEEE-EeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCccc---chhhHH-
Confidence            456666652     123333444 454  56667765 67888999999999999999999999995432   122222 


Q ss_pred             HHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhH
Q 017967          289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDL  325 (363)
Q Consensus       289 ~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~  325 (363)
                      ...-.++++   .++|.++ .| +-+|.+  ++. +++
T Consensus       642 ~~gv~PDIi---~~gKgLt-gG~~Plaa~--l~~-~~I  672 (817)
T PLN02974        642 LLGCKPDIA---CYAKLLT-GGLVPLAAT--LAT-EEV  672 (817)
T ss_pred             hcCCCCCEE---eeccccc-CCCCccEEE--EEc-HHH
Confidence            223334444   3589898 78 589988  665 663

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.45  E-value=0.0033  Score=58.60  Aligned_cols=141  Identities=13%  Similarity=0.159  Sum_probs=101.2

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh---CCCCEEEEcCC-CCcchHHHHh
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---FPGAKVLISSP-TWGNHKNIFN  195 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~---~~gd~Vlv~~P-~y~~~~~~~~  195 (363)
                      ..|....+...|.+++.+.+ +.       +.++.  |.-|.+|-+++..++...   .||.+..+++- .|.......+
T Consensus        73 EAYagsrs~~~L~~avkdif-Gf-------q~~iP--thQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~  142 (471)
T COG3033          73 EAYAGSRSYYALADAVKDIF-GF-------QYTIP--THQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQ  142 (471)
T ss_pred             hhhcccccHHHHHHHHHHhc-Cc-------eeeee--ccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHH
Confidence            56988999999999999986 32       45555  777777776664333222   26655555554 4455566778


Q ss_pred             hCCCCeEEEecccCC--------CCCCCHHHHHHHHHcCCC--CcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeE
Q 017967          196 DARVPWSEYRYYDPK--------TVGLDFEGMIADIKAAPG--GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP  265 (363)
Q Consensus       196 ~~G~~~~~v~~~~~~--------~~~~d~~~l~~~l~~~~~--~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~i  265 (363)
                      .+|..++-++.++..        .+.+|++.|++.+.+...  -+.+++....|.-.|.-.|.+-++++.++|++|++.+
T Consensus       143 ~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipv  222 (471)
T COG3033         143 INGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPV  222 (471)
T ss_pred             hcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcE
Confidence            899988888764322        257899999999987332  3444444444667799999999999999999999999


Q ss_pred             EEecC
Q 017967          266 FFDVA  270 (363)
Q Consensus       266 i~De~  270 (363)
                      +.|.+
T Consensus       223 v~Da~  227 (471)
T COG3033         223 VMDAA  227 (471)
T ss_pred             Eeehh
Confidence            99987

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=97.41  E-value=0.0043  Score=58.39  Aligned_cols=186  Identities=14%  Similarity=0.142  Sum_probs=105.6

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcch-HHHHhhCC
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH-KNIFNDAR  198 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~-~~~~~~~G  198 (363)
                      ..|.... .-+|-+++++.+-..      -..+++  +++|++|.+++..|...+...-.|+--.-+|.+. ...+-..|
T Consensus        87 ~~~~~~p-i~~~Ae~L~s~~P~~------l~~vfF--~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~  157 (442)
T KOG1404|consen   87 SGYLNPP-IHDLAEALVSKLPGD------LKVVFF--VNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTG  157 (442)
T ss_pred             ccccCCc-HHHHHHHHHHhCCCC------ceEEEE--ecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhccccc
Confidence            3453322 346667776665222      234656  9999999999977766555333455555566443 33333333


Q ss_pred             CCeEEEecc----------cCC----CCCCC---------HHHHHHHHHc-CCCCcEEEEEcCCCCCCCCC-CCHHHHHH
Q 017967          199 VPWSEYRYY----------DPK----TVGLD---------FEGMIADIKA-APGGSFILLHGCAHNPTGID-PTPEQWEK  253 (363)
Q Consensus       199 ~~~~~v~~~----------~~~----~~~~d---------~~~l~~~l~~-~~~~~~~~~i~~p~NPTG~~-~s~~~~~~  253 (363)
                      ......+..          .++    -++-+         .+++++.+.. .+.....++.-.-+---|++ +++--+++
T Consensus       158 ~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka  237 (442)
T KOG1404|consen  158 LSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKA  237 (442)
T ss_pred             CCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHH
Confidence            322221110          000    01111         1334444433 33334444433333333443 45577899


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhH
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL  325 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~  325 (363)
                      ..++|+++|.++|.||+-.+|.-.+   .++.+    +..+-+==+-+++|.+| .|+-+|.+  ++. +++
T Consensus       238 ~~~~v~k~Ggl~IaDEVqtGfGRtG---~~wgf----e~h~v~PDIvTmAKgiG-nG~Pl~AV--vtt-~EI  298 (442)
T KOG1404|consen  238 AYKVVRKRGGLFIADEVQTGFGRTG---HMWGF----ESHGVVPDIVTMAKGIG-NGFPLGAV--VTT-PEI  298 (442)
T ss_pred             HHHHHHHcCCEEEehhhhhcccccc---ccccc----cccCCCccHHHHHhhcc-CCCcceee--ecC-HHH
Confidence            9999999999999999988886543   23432    22222223568999999 89999999  775 773

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=97.38  E-value=0.0053  Score=59.72  Aligned_cols=143  Identities=12%  Similarity=0.035  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh----C-CC-CEEEEcCCCCcchHH---------
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY----F-PG-AKVLISSPTWGNHKN---------  192 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~----~-~g-d~Vlv~~P~y~~~~~---------  192 (363)
                      ..+|-+.+++..-..     .-++|++  +.||++|++.+..+...+    . |. .+++.-..+|.+-.-         
T Consensus        89 a~~LA~~L~~~aP~~-----~l~~vFf--~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~  161 (449)
T COG0161          89 AIELAEKLAELAPEG-----GLDHVFF--TDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPV  161 (449)
T ss_pred             HHHHHHHHHHhCCCC-----CccEEEE--eCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCch
Confidence            456666666664211     1378988  999999999986654333    1 33 237777778833211         


Q ss_pred             -----HHhhCCCCeEEEeccc---CCC---CC----CCHHHHHHHHHcCC-CCcEEEEEcCC-CC-CCCCCC-CHHHHHH
Q 017967          193 -----IFNDARVPWSEYRYYD---PKT---VG----LDFEGMIADIKAAP-GGSFILLHGCA-HN-PTGIDP-TPEQWEK  253 (363)
Q Consensus       193 -----~~~~~G~~~~~v~~~~---~~~---~~----~d~~~l~~~l~~~~-~~~~~~~i~~p-~N-PTG~~~-s~~~~~~  253 (363)
                           .+...-..+..+|.-.   ...   +.    -..++|++.+.+.. ++...++ ..| .- -.|..+ ++.-|++
T Consensus       162 ~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI-~EPv~g~agG~~~pp~~Yl~~  240 (449)
T COG0161         162 ALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFI-VEPVVGGAGGMLVPPPGYLKR  240 (449)
T ss_pred             hhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEE-ecccccccCCcccCChHHHHH
Confidence                 1111111122222100   001   11    23567777777654 4444444 444 22 356554 4567889


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCC
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGS  278 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~  278 (363)
                      +-++|++||+++|.||+--+|.-.+
T Consensus       241 vr~iC~ky~ILlI~DEV~tGFGRTG  265 (449)
T COG0161         241 VREICDKYGILLIADEVATGFGRTG  265 (449)
T ss_pred             HHHHHHHcCcEEEeecceeCCCcCc
Confidence            9999999999999999999987553

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=97.35  E-value=0.0028  Score=60.82  Aligned_cols=140  Identities=16%  Similarity=0.132  Sum_probs=98.5

Q ss_pred             chHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC---CC---CEEEEcCCCCcchHHHHhhCCCC
Q 017967          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF---PG---AKVLISSPTWGNHKNIFNDARVP  200 (363)
Q Consensus       127 G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~---~g---d~Vlv~~P~y~~~~~~~~~~G~~  200 (363)
                      +...+.+++.+++..-.+.+   +..+.+.|.||++++.+.-.-.....   .|   ..++++.-....+....+.++++
T Consensus       117 ~~~~~e~~~Vnm~~~L~~~~---~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~  193 (491)
T KOG1383|consen  117 VVRKLEAECVNMIANLFNAP---SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVE  193 (491)
T ss_pred             hhHHHHHHHHHHHHHHhcCC---ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEE
Confidence            44455555555543333322   22444558999999544422111111   12   34666666667777778889999


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHh-cCCeEEEecCCCCCcC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFAS  276 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~-~~~~ii~De~y~~~~~  276 (363)
                      +..+|++ +.++.+|+..+.+.+.+   ++..++..-|+-|+|..   +++++|.++..+ +++.+-+|.+-.+|.-
T Consensus       194 l~~V~~~-~~~~~~D~~k~~~~i~e---Nti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~  263 (491)
T KOG1383|consen  194 LREVPLD-EGDYRVDPGKVVRMIDE---NTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFIN  263 (491)
T ss_pred             EEeeecc-ccceEecHHHHHHHhcc---ceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccc
Confidence            9999995 47899999999999984   67777777899999965   778888888888 9999999999888865

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=97.33  E-value=0.0018  Score=61.48  Aligned_cols=141  Identities=14%  Similarity=0.062  Sum_probs=85.0

Q ss_pred             CCCEEEEcCCCCcchHHHHhhCCCCeEEEecc-cCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCH-HHHHH
Q 017967          176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTP-EQWEK  253 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~-~~~~~  253 (363)
                      .++.|+.+.-........+..+|.+++.++.. +.+....|.+.+++.+++.....++.+++.   +++..... +++++
T Consensus       100 ~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltt---tscfapr~~D~i~~  176 (389)
T PF05889_consen  100 KAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTT---TSCFAPRLPDDIEE  176 (389)
T ss_dssp             T--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEE---SSTTTTB----HHH
T ss_pred             CCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEe---cCccCCCCCccHHH
Confidence            56889988876666667778899999999842 233345578889988876444444444433   22222233 45999


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHH
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLA  326 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~  326 (363)
                      |+++|+++|+..|+..+|.--...    -...+......+---+++.|.-|+|= -+  +|-.++.++++..+
T Consensus       177 IakiC~~~~IPhlvNnAYgvQ~~~----~~~~i~~a~~~GRvda~vqS~dkNF~-VP--vGgai~As~~~~~i  242 (389)
T PF05889_consen  177 IAKICKEYDIPHLVNNAYGVQSSK----CMHLIQQAWRVGRVDAFVQSTDKNFM-VP--VGGAIMASFDPSGI  242 (389)
T ss_dssp             HHHHHHHHT--EEEEGTTTTT-HH----HHHHHHHHHHHSTCSEEEEEHHHHHC-EE--SSHEEEEESSHHHH
T ss_pred             HHHHHHHcCCceEEccchhhhHHH----HHHHHHHHHhcCCcceeeeecCCCEE-ec--CCCcEEEecCHHHH
Confidence            999999999999999998764321    01112222233344467899999995 44  45554577777733

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PLN02672 methionine S-methyltransferase

Probab=97.25  E-value=0.006  Score=65.67  Aligned_cols=210  Identities=14%  Similarity=0.044  Sum_probs=137.1

Q ss_pred             HccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHH----HHhCCCCEEEEcCCCCcc
Q 017967          114 LERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALI----ERYFPGAKVLISSPTWGN  189 (363)
Q Consensus       114 ~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~----~~~~~gd~Vlv~~P~y~~  189 (363)
                      +......-|.++.|...||+.+|.|+...++.++++++|++  .++-..|++.+.+++    ++++.+.+..++ +.|  
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  488 (1082)
T PLN02672        414 LKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVV--FPSRAVAIENALRLFSPRLAIVDEHLTRWLP-KKW--  488 (1082)
T ss_pred             HccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEE--eccHHHHHHHHHHhhChHHHhhhhhhhccCC-HHH--
Confidence            33434477889999999999999999999999999999988  999999998874432    222233222222 122  


Q ss_pred             hHHHHhhCC--------CC--eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Q 017967          190 HKNIFNDAR--------VP--WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (363)
Q Consensus       190 ~~~~~~~~G--------~~--~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~  259 (363)
                       ...+...|        ..  |+.-|-      .-  +.+.+.+++-  ++.+++..-.+   +-..+....+.|++.++
T Consensus       489 -~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  554 (1082)
T PLN02672        489 -LTSLAIENATSDSKSDDVITVIEAPR------QS--DLVIELIKKL--KPQVVVTGMAD---FEMRTSTAFEHLLNVTA  554 (1082)
T ss_pred             -HhHhhhhcccccCccCCeEEEEeCCC------cc--hHHHHHHHhC--CCeEEEEeccc---hhhhhHHHHHHHHHHHH
Confidence             22222221        22  222221      11  2455555542  23344433322   44556778999999999


Q ss_pred             hcCCeEEEecC-CCCCcCCCCCCchhHHHHHHh---cCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHh
Q 017967          260 EKNHIPFFDVA-YQGFASGSLDNDASSVRLFAT---RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR  335 (363)
Q Consensus       260 ~~~~~ii~De~-y~~~~~~~~~~~~~~~~~~~~---~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~  335 (363)
                      +.|..++.|+. |.++...   +....+..++.   ...+..++.++-|+-=.+.+-+.++  +.-+..    +.+.+.+
T Consensus       555 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~  625 (1082)
T PLN02672        555 EIGARLFLDISDHLELSSL---PGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFV--ISENEA----VLKALSK  625 (1082)
T ss_pred             hhCcEEEEehhhheeeccC---CCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEE--ecCcHH----HHHHHHH
Confidence            99999999998 3444432   22334444432   3457778889999887789999999  665555    6777777


Q ss_pred             hhccccCCCchHHHHH
Q 017967          336 LARPMYSNPPPMLLGI  351 (363)
Q Consensus       336 ~~~~~~~~~s~~~q~~  351 (363)
                      .......+.+.++|.-
T Consensus       626 ~~~~~~~~~~~~~~~~  641 (1082)
T PLN02672        626 TGEVLEGRTAIISQFY  641 (1082)
T ss_pred             HHHhhccchHHHHHHH
Confidence            7778888999999873

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=97.23  E-value=0.018  Score=61.82  Aligned_cols=189  Identities=16%  Similarity=0.097  Sum_probs=110.3

Q ss_pred             EeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCC-----cc----hHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI-----EG----LAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~-----~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      .++.|.|.     .+++..+.+.+....  .....|+|.     +|    +.+++..+++++.-      +++++.+  +
T Consensus       107 fiG~G~y~-----~~~P~~v~~~i~~~~--~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~------~~anaSL--~  171 (993)
T PLN02414        107 YIGMGYYN-----THVPPVILRNILENP--GWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGL------PMSNASL--L  171 (993)
T ss_pred             ccCCCCCC-----ccCCHHHHHHHHhCh--HHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCC------ChhhEee--c
Confidence            45666652     235566655544322  122445543     34    45677778887532      3688977  9


Q ss_pred             cchhHHHHHHHHHHHHhCCC--CEEEEcCCCCcchHHHHh----hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcE
Q 017967          158 LSGTGSLRLAAALIERYFPG--AKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~g--d~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                      -++|.+.+.+.... .+.+|  |+|+|++-.|+.+...++    ..|++++.++..+     .+      ...   +...
T Consensus       172 d~aTAaaea~~~a~-~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~-----~~------~~~---~~v~  236 (993)
T PLN02414        172 DEGTAAAEAMAMCN-NILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKD-----FD------YSS---GDVC  236 (993)
T ss_pred             CChHHHHHHHHHHH-hcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchh-----hc------ccc---CceE
Confidence            99999998774332 23444  789999999998876664    5799999998732     11      001   1232


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc---cc
Q 017967          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL---GL  308 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~---~l  308 (363)
                      .+++.+| |-+|.+.+   +++|.++|+++|+++++ .+ ..+......    +..   +. .-.|++++--|..   |.
T Consensus       237 ~vlvq~P-~~~G~v~d---v~~I~~~ah~~GaL~iV-aa-d~lal~~l~----~pg---e~-GADi~vgsgqKwg~P~G~  302 (993)
T PLN02414        237 GVLVQYP-ATDGEVLD---YAEFVKNAHANGVKVVM-AT-DLLALTMLK----PPG---EW-GADIVVGSAQRFGVPMGY  302 (993)
T ss_pred             EEEEecC-CCCeEEcC---HHHHHHHHHHcCCEEEE-EE-CHHHhcCCC----CHh---hc-cCcEEEECCCccccCCCC
Confidence            3333333 34899864   66788889999999998 33 222222110    111   12 2235567766654   22


Q ss_pred             ccccceEEEEeeC
Q 017967          309 YAERIGAMNVVCS  321 (363)
Q Consensus       309 ~G~RvG~i~~v~~  321 (363)
                      .|=+.|++  .+.
T Consensus       303 GGP~aGfl--avr  313 (993)
T PLN02414        303 GGPHAAFL--ATS  313 (993)
T ss_pred             CCCCeeEE--EEC
Confidence            35558888  554

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=96.60  E-value=0.07  Score=51.10  Aligned_cols=153  Identities=13%  Similarity=0.149  Sum_probs=92.5

Q ss_pred             EeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCc-----ch----HHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE-----GL----AAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~-----G~----~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      -++.|.|.     .++|+.+.+.+..  ++.....|+|.+     |.    .++..-++++    .|.++...  ..  .
T Consensus        79 fiG~GyY~-----~~~P~vI~rnile--~pewyTaYTPYQpEISQGrLqaLfefQtlv~dL----TGm~VANA--Sm--~  143 (450)
T COG0403          79 FIGAGYYD-----TYTPPVILRNILE--NPEWYTAYTPYQPEISQGRLEALFEFQTLVADL----TGLDVANA--SM--L  143 (450)
T ss_pred             hccCcccC-----CcCcHHHHHHhhc--CccccccCCCCchhhhhHHHHHHHHHHHHHHHH----hCCCcccc--hh--h
Confidence            56788873     3345555433211  345667787743     32    2333344444    23333322  22  5


Q ss_pred             cchhHHHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHh----hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEE
Q 017967          158 LSGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~-~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (363)
                      -++|.+-+.+....+.-+ +..+|+|+.-.|+.+...++    ..|++++.++.+       |++.+++. ..  .....
T Consensus       144 DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~-~~--~~~~g  213 (450)
T COG0403         144 DEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA-DD--GDVFG  213 (450)
T ss_pred             hhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhc-cc--cCeEE
Confidence            677877776643333332 35899999999999999886    356777777652       67777776 32  24556


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEE
Q 017967          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF  267 (363)
Q Consensus       233 ~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~  267 (363)
                      +++.+|+ -.|  ....++++|.+.+++++.++++
T Consensus       214 v~vQyP~-~~G--~~~~d~~~l~~~~h~~~al~~v  245 (450)
T COG0403         214 VLVQYPN-TFG--IVEEDLRALIEAAHSAGALVIV  245 (450)
T ss_pred             EEEecCC-CCC--ccchhHHHHHHHHhhcCCEEEE
Confidence            6655554 344  4567899999999999876664

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=96.37  E-value=0.0056  Score=58.79  Aligned_cols=94  Identities=16%  Similarity=0.089  Sum_probs=71.7

Q ss_pred             EEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCC---CcEEEEEcCCCCCCCCCCCHHHHHHHH
Q 017967          179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFILLHGCAHNPTGIDPTPEQWEKIA  255 (363)
Q Consensus       179 ~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~---~~~~~~i~~p~NPTG~~~s~~~~~~i~  255 (363)
                      .+...+-+....+..+...|+++..++.++  +++++.+.|.+++.+...   .+.+++ .+-  =|..+-.-+++.+|.
T Consensus       184 V~Y~SDqahssveka~~i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~-at~--GTT~~ca~D~l~elg  258 (511)
T KOG0628|consen  184 VAYCSDQAHSSVEKACLIAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVC-ATL--GTTSSCAFDELEELG  258 (511)
T ss_pred             eEEecCcccchHHHhHhhcceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCccEEEE-Eee--cCccccccccHHHhc
Confidence            356667788888888888999999999853  899999999999986221   233333 232  233334568999999


Q ss_pred             HHHHhcCCeEEEecCCCCCcCC
Q 017967          256 DVIQEKNHIPFFDVAYQGFASG  277 (363)
Q Consensus       256 ~~~~~~~~~ii~De~y~~~~~~  277 (363)
                      .+|+++++++-+|.+|++..+.
T Consensus       259 ~Vc~~~glWLHVDAAYAGsa~i  280 (511)
T KOG0628|consen  259 PVCREEGLWLHVDAAYAGSAFI  280 (511)
T ss_pred             chhhhcCEEEEeehhhcccccc
Confidence            9999999999999999987765

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=96.26  E-value=0.13  Score=50.15  Aligned_cols=151  Identities=15%  Similarity=0.174  Sum_probs=80.2

Q ss_pred             cEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC-----Ccch----HHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-----IEGL----AAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-----~~G~----~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      .--++.|.|.     -++++.+.+.+..  .++....|.|     .+|.    .++...++++.    |.++  -|.-+ 
T Consensus        67 ~~fiG~G~y~-----~~~P~~i~~~i~~--~~ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLT----Gmdv--aNaSl-  132 (429)
T PF02347_consen   67 TSFIGAGSYT-----HYVPAVIDRNILS--RPEFYTAYTPYQPEISQGRLQALFEYQSMICELT----GMDV--ANASL-  132 (429)
T ss_dssp             TS---CTTT----------HHHHH-HHC--CHHCCCS-STTSGGGBHHHHHHHHHHHHHHHHHH----TSSE--E-SEB-
T ss_pred             CccccccccC-----ceeChhhcCcccc--ChhhhccCCCCCcHHHHHHHHHHHHHHHHHHHhh----CCCc--cCCCC-
Confidence            3345677762     2344455441211  2233356666     4453    34555555553    2221  12222 


Q ss_pred             eccchhHHHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHh----hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCc
Q 017967          156 QGLSGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~-~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (363)
                       ..|++.+-+.+....+..+ .+++|+++.-.++.+...++    ..|++++.++.++  +...|        .   +++
T Consensus       133 -yd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~--~~~~d--------~---~~~  198 (429)
T PF02347_consen  133 -YDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDE--DGTTD--------D---DDT  198 (429)
T ss_dssp             -SSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBT--TCSB---------S---TTE
T ss_pred             -CChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccc--cCCcc--------c---cCe
Confidence             5677777776643333333 33699999999999988654    5788999998743  23333        2   457


Q ss_pred             EEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEE
Q 017967          231 FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF  267 (363)
Q Consensus       231 ~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~  267 (363)
                      ..+++.+|| =.|..   +++++|.++++++|.++++
T Consensus       199 a~v~vq~Pn-~~G~~---ed~~~i~~~~h~~gal~~~  231 (429)
T PF02347_consen  199 AAVMVQNPN-TFGVF---EDIKEIADIAHAAGALVIV  231 (429)
T ss_dssp             EEEEEESS--TTSB-----THHHHHHHHHHTT-EEEE
T ss_pred             EEEEeecCC-CCceE---eeHHHHHHHHHHcCCEEEE
Confidence            777778885 45765   3488899999999988776

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=96.15  E-value=0.02  Score=51.31  Aligned_cols=178  Identities=15%  Similarity=0.100  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHhCCCCE-EEEcCCCCcchHHHHhhCCCCeEEE-ecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          164 LRLAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEY-RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~-Vlv~~P~y~~~~~~~~~~G~~~~~v-~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +.+.+.-++.-+|..+ |+-+.-.-.......-..|.+.+.+ ++.+.+....|++.++..+.+..+...+-++..-+  
T Consensus        89 lslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~stts--  166 (432)
T KOG3843|consen   89 LSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTS--  166 (432)
T ss_pred             HHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeeccc--
Confidence            3444323443445543 4433333333334445688887666 45555556668999999988765555444432210  


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH---HhcCCeEEEEEcCccccccccccceEEEE
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF---ATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~---~~~~~~vi~~~S~SK~~~l~G~RvG~i~~  318 (363)
                      .=..-+++.+++|..+|..|++.-|+.++|.--...       .++..   .+.+--.-++.|+-|+|-.|   +|-.++
T Consensus       167 cfapr~pd~leaiaaica~~diphivnnayglqsee-------~i~~iaa~~~~grida~vqsldknf~vp---vggaii  236 (432)
T KOG3843|consen  167 CFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEE-------CIHKIAAAAECGRIDAFVQSLDKNFMVP---VGGAII  236 (432)
T ss_pred             ccCCCCCchHHHHHHHHHccCchhhhccccccchHH-------HHHHHHHHhhhccHHHHHHHhhhcceee---cchhHh
Confidence            011124688999999999999999999998764321       22222   22333345578999999776   454422


Q ss_pred             eeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          319 VCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       319 v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      .+-+..    +++.+.+.-.  .-..+.++-.++..+|..+
T Consensus       237 a~fk~n----~iq~iak~yp--grasa~ps~dllitll~~g  271 (432)
T KOG3843|consen  237 AAFKDN----FIQEIAKMYP--GRASASPSLDLLITLLSLG  271 (432)
T ss_pred             hHhHHH----HHHHHHHhCC--CccccCccHHHHHHHHHhc
Confidence            222333    4444433211  1233344555555555443

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=96.07  E-value=0.51  Score=50.55  Aligned_cols=150  Identities=13%  Similarity=0.162  Sum_probs=91.4

Q ss_pred             EeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCc-----ch----HHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE-----GL----AAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~-----G~----~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      -++.|.|.     ...++.+.+.+..  .++....|.|.+     |.    .++...++++.    |.+  ..|..+  .
T Consensus        68 fig~G~y~-----~~~p~~i~r~v~~--~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLt----Gm~--~aNaSl--~  132 (939)
T TIGR00461        68 YIGMGYYG-----TILPPVIQRNLLE--NPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLT----GLP--VANASL--L  132 (939)
T ss_pred             cCCCCcCC-----CcCChHHHHHHHh--CchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHH----CCC--hhhhhc--c
Confidence            44677763     3345555544332  233346676643     43    34555566653    222  244444  6


Q ss_pred             cchhHHHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHh----hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEE
Q 017967          158 LSGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~-~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (363)
                      .++|.+.+.+........ ++++|+|++-.++.+...++    ..|++++.+++          +.|++.+     +...
T Consensus       133 d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~~----------~~l~~~~-----~~~~  197 (939)
T TIGR00461       133 DEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVDC----------SDIKKAV-----DVFG  197 (939)
T ss_pred             chhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEcH----------HHHhhcC-----CEEE
Confidence            788887776532222221 34799999999988887665    77888888754          3344433     2456


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecC
Q 017967          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (363)
Q Consensus       233 ~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~  270 (363)
                      +++.+| |=+|...   ++++|++.++++|.+++++--
T Consensus       198 v~~q~P-n~~G~ie---d~~~i~~~~h~~gal~~~~ad  231 (939)
T TIGR00461       198 CLLQYP-ATDGSIL---DYKQLIDALHSHKSLVSVAAD  231 (939)
T ss_pred             EEEECC-CCCeEEe---cHHHHHHHHHHcCCEEEEEec
Confidence            666676 4578774   688899999999998888443

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=95.90  E-value=0.063  Score=51.33  Aligned_cols=87  Identities=13%  Similarity=0.044  Sum_probs=60.8

Q ss_pred             EcCCCCcchHHHHhhCC---CCeEEEecccCCCCCCCHHHHHHHHHcCCCC---cEEEEEcCCCCCCCCCCCHHHHHHHH
Q 017967          182 ISSPTWGNHKNIFNDAR---VPWSEYRYYDPKTVGLDFEGMIADIKAAPGG---SFILLHGCAHNPTGIDPTPEQWEKIA  255 (363)
Q Consensus       182 v~~P~y~~~~~~~~~~G---~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~---~~~~~i~~p~NPTG~~~s~~~~~~i~  255 (363)
                      +++-++......+..+|   -.++.|+.+  ..+.+++++||+.+.++..+   + +++.++  -=|.+.=.-+++..|+
T Consensus       202 tSeesHYSi~kaAa~lg~gtd~c~~v~t~--e~Gkm~~~dLe~kile~k~kg~~P-f~vnaT--aGTTV~GAFDdL~~ia  276 (510)
T KOG0629|consen  202 TSEESHYSIKKAAAFLGLGTDHCIKVKTD--ERGKMIPDDLEKKILEAKAKGGVP-FFVNAT--AGTTVLGAFDDLNGIA  276 (510)
T ss_pred             ecccchhhHHHHHHHhccCCceeEEeccc--ccCccchHHHHHHHHHHHhcCCCC-eEEEec--CCceeeeccCcHHHHH
Confidence            33445556677777777   367888874  46889999999998774433   3 333222  2233333447889999


Q ss_pred             HHHHhcCCeEEEecCCCC
Q 017967          256 DVIQEKNHIPFFDVAYQG  273 (363)
Q Consensus       256 ~~~~~~~~~ii~De~y~~  273 (363)
                      ++|++|++++-+|.+|.+
T Consensus       277 diC~k~~lWmHvDAAwGG  294 (510)
T KOG0629|consen  277 DICEKHKLWMHVDAAWGG  294 (510)
T ss_pred             HHHHhcCEEEEeeccccc
Confidence            999999999999999987

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=95.81  E-value=0.1  Score=48.42  Aligned_cols=120  Identities=13%  Similarity=0.079  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC--CCCEEEEcCCCCcch-----HHHHhhCCCCeEE
Q 017967          131 FNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--PGAKVLISSPTWGNH-----KNIFNDARVPWSE  203 (363)
Q Consensus       131 lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~--~gd~Vlv~~P~y~~~-----~~~~~~~G~~~~~  203 (363)
                      +-..+|-++..+      +.++++  +.+.+-  ++.-.+...++  +|++|++++-.-.+.     ...+...|..   
T Consensus        81 lgdklApLiGA~------~~Evvv--~dtts~--nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---  147 (407)
T COG3844          81 LGDKLAPLIGAR------AGEVVV--TDTTSI--NLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---  147 (407)
T ss_pred             HHHHhhhhhcCC------CCceEE--eCCcch--HHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---
Confidence            344555555443      577766  443333  33333444444  689998888533222     2223333322   


Q ss_pred             EecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC
Q 017967          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (363)
Q Consensus       204 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~  273 (363)
                      +.+    ...+.++++++++.   +...+++++..|.-||..+...   +|-.++.+++++++.|-+.+.
T Consensus       148 ~~~----~~~~~P~~~~~~~~---dd~AvV~L~~V~y~TGql~dm~---aiT~~AH~~galv~wDLAHsa  207 (407)
T COG3844         148 YDL----EGVIAPRALEEAIT---DDVAVVLLSHVNYKTGQLLDMR---AITALAHQHGALVGWDLAHSA  207 (407)
T ss_pred             ccc----eeeeChHHHHHhhc---cceEEEEeccccccccceeeHH---HHHHHHHhcCceEEeehhccc
Confidence            111    23456778988887   4677888899999999998654   555568999999999999753

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.13  Score=48.78  Aligned_cols=204  Identities=12%  Similarity=-0.004  Sum_probs=116.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc--CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      +++||+...+....++..+.+.+...++...-.  +-..-|+...-+..+.+.+|+|+..       ++.|+.   .-|-
T Consensus        95 ~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~-------E~aivY---s~gF  164 (467)
T KOG1358|consen   95 DVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGT-------EDAIVY---SYGF  164 (467)
T ss_pred             eeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCC-------cceeee---cccc
Confidence            678888777654444444444444444443211  1112377766778899999999855       356655   3233


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC-------CC--CcEE
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-------PG--GSFI  232 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-------~~--~~~~  232 (363)
                      .++.-+  +-+....||.|.+-.-.......-++...-.+++..-       -|.+.++..+.+.       ++  .+..
T Consensus       165 ~ti~S~--ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkh-------ndm~~lerll~E~~~~~~K~~k~~~~Rr  235 (467)
T KOG1358|consen  165 STIESA--IPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKH-------NDMEDLERLLPEQEDEDQKNPKKALTRR  235 (467)
T ss_pred             chhhhc--chhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecC-------CCHHHHHHhccCcchhhhhccccccceE
Confidence            332222  3445669999988876666666655555555555542       3556665554431       11  1233


Q ss_pred             EEEcC-CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC---CchhHHHHHHhcCCeEEEEEcCcccccc
Q 017967          233 LLHGC-AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD---NDASSVRLFATRGMELLVAQSYSKNLGL  308 (363)
Q Consensus       233 ~~i~~-p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~---~~~~~~~~~~~~~~~vi~~~S~SK~~~l  308 (363)
                      +++.. ---+||...+.   .+|+++..|+...+|.||.|+--..+..-   ..++.    .+..+-.++++|++-.++.
T Consensus       236 fiv~EGl~~N~g~i~pl---~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~----v~~~~iDiv~~sm~~alas  308 (467)
T KOG1358|consen  236 FIVVEGLYANTGDICPL---PEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFG----VPITDIDIVTASMETALAS  308 (467)
T ss_pred             EEEEEeeccCCCccccc---HHHHHHHhhheEEEEEecccccccccccCccccccCC----CCccceeeeeecccccccc
Confidence            44333 34578887765   55667788999999999998633322100   01111    1233556788888888764


Q ss_pred             ccccceEE
Q 017967          309 YAERIGAM  316 (363)
Q Consensus       309 ~G~RvG~i  316 (363)
                      .|   |+.
T Consensus       309 ~G---gFc  313 (467)
T KOG1358|consen  309 GG---GFC  313 (467)
T ss_pred             cC---cee
Confidence            33   555

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=94.21  E-value=1.5  Score=41.00  Aligned_cols=61  Identities=16%  Similarity=0.214  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHhcCCeEEEecCCCCCcCC
Q 017967          215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (363)
Q Consensus       215 d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~-~~~~~i~~~~~~~~~~ii~De~y~~~~~~  277 (363)
                      |.++|+.+++.  +....+++-.-+---|++.++ .-+++.-++|.+||+++|.||+-.++.-.
T Consensus       195 d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RT  256 (427)
T KOG1402|consen  195 DAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLART  256 (427)
T ss_pred             CHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhccccc
Confidence            78999999985  345555544446677776654 56788999999999999999998777644

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=93.43  E-value=0.55  Score=43.10  Aligned_cols=159  Identities=14%  Similarity=0.138  Sum_probs=90.3

Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH--------h-hCCC---CeEEE-ecccC-------------
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF--------N-DARV---PWSEY-RYYDP-------------  209 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~--------~-~~G~---~~~~v-~~~~~-------------  209 (363)
                      .+++|++|..++.++.+.+.....|++.+-.|.++....        . --|+   .++.+ |+.+-             
T Consensus       107 F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a  186 (452)
T KOG1403|consen  107 FVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDA  186 (452)
T ss_pred             EecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcc
Confidence            389999999999887776765555666666665554322        1 1111   12222 22110             


Q ss_pred             CCCCCCHHHHHHHHHc---CCCCcEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhH
Q 017967          210 KTVGLDFEGMIADIKA---APGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (363)
Q Consensus       210 ~~~~~d~~~l~~~l~~---~~~~~~~~~i~~p~NPTG~~~s~-~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  285 (363)
                      +.+..-.+.+++.++.   ...+...++--+-+.=-|.++++ .-.+++++..+.+|-+.|.||+--+|.--+  ...|.
T Consensus       187 ~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG--~hyWa  264 (452)
T KOG1403|consen  187 DMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVG--SHYWA  264 (452)
T ss_pred             cchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccc--hhhhh
Confidence            0011112334444332   22333344322333334555555 456778888999999999999987876432  33555


Q ss_pred             HHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       286 ~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      +... +.-++   +-.+.|.+| .|.-++.+  ++. ++
T Consensus       265 fq~y-~fiPD---IVtmgKpmG-NGhPVa~V--att-ke  295 (452)
T KOG1403|consen  265 FQTY-NFIPD---IVTMGKPMG-NGHPVAAV--ATT-KE  295 (452)
T ss_pred             hhhh-ccccc---hheecccCC-CCCeeeEE--ecc-HH
Confidence            4322 22222   346789999 99999999  554 76

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=91.32  E-value=2.9  Score=42.49  Aligned_cols=142  Identities=16%  Similarity=0.130  Sum_probs=92.5

Q ss_pred             CCCCC---CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh--CCC----CEEEEcCCCCcch
Q 017967          120 KEYLP---IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FPG----AKVLISSPTWGNH  190 (363)
Q Consensus       120 ~~Y~~---~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~--~~g----d~Vlv~~P~y~~~  190 (363)
                      +-|.|   .+|..++-+.+-+++-...|.    +++.+ |-++|.++-....+.++.+  ..|    ...+||-......
T Consensus       569 HPF~P~eQaqGY~~lf~~Le~~Lc~iTG~----D~~s~-QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTN  643 (1001)
T KOG2040|consen  569 HPFAPVEQAQGYQQLFTELEKDLCEITGF----DSFSL-QPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTN  643 (1001)
T ss_pred             CCCCchHHHhhHHHHHHHHHHHhheeecc----cceee-cCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCC
Confidence            44555   457666666666665433222    44443 4444443333322222222  133    3478888888888


Q ss_pred             HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecC
Q 017967          191 KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (363)
Q Consensus       191 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~  270 (363)
                      ...+...|.++++|.++  .++.+|..+|.+...++.+.-..+.+..|+   ..-.=++.+.++.++..++|--+..|.+
T Consensus       644 PASA~MagmkvvpV~~~--~~G~id~~dLk~kaekh~~~Laa~MvTYPS---T~GvfE~~i~d~cd~iHehGGQVYlDGA  718 (1001)
T KOG2040|consen  644 PASAAMAGMKVVPVGCD--ANGNIDMVDLKAKAEKHKDNLAALMVTYPS---THGVFEEGIDDICDIIHEHGGQVYLDGA  718 (1001)
T ss_pred             hhhHHhcCCEEEEeecc--CCCCccHHHHHHHHHHhhhhhheeEEeccc---ccccccccHHHHHHHHHhcCCEEEecCC
Confidence            88899999999999984  568899999998887655554455555553   2223357889999999999999999987


Q ss_pred             C
Q 017967          271 Y  271 (363)
Q Consensus       271 y  271 (363)
                      -
T Consensus       719 N  719 (1001)
T KOG2040|consen  719 N  719 (1001)
T ss_pred             C
Confidence            4

>PRK12566 glycine dehydrogenase; Provisional

Probab=90.13  E-value=6.9  Score=42.12  Aligned_cols=148  Identities=11%  Similarity=0.070  Sum_probs=82.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCc-----ch----HHHHHHHHHHHhcCCCCcccCCcEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE-----GL----AAFNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~-----G~----~~lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      -..-++.|.|.     .+++..+.+.+..  +++....|.|.+     |.    .++..-++++.    |.++.  |-.+
T Consensus        80 ~~~fiG~G~y~-----~~~P~vi~~~i~~--~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~Lt----Gm~va--NASl  146 (954)
T PRK12566         80 WTSLIGMGYHG-----TVTPTVILRNVLE--NPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLT----GLDLA--NASL  146 (954)
T ss_pred             ccccccccccC-----CcCcHHHHHHHHh--CchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHh----Cchhh--hhhh
Confidence            34567778773     3345555333222  234456777743     32    33444555552    33222  2212


Q ss_pred             EeccchhHHHHHHHHHHHHhC-CCCEEEEcCCCCcchHHHHh----hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          155 VQGLSGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~~-~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                        .-++|.+-+.+....+..+ ...+|+|++-.++.+..+++    ..|++++.             +++++.+.   ..
T Consensus       147 --~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~---~~  208 (954)
T PRK12566        147 --LDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAA---HA  208 (954)
T ss_pred             --ccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCC---CC
Confidence              4566666553321222222 24689999999999888775    45666553             22333232   23


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEE
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF  266 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii  266 (363)
                      ...+++.+|| -.|.+   +++++|.++++++|.++|
T Consensus       209 ~~~v~vq~P~-~~G~i---~d~~~i~~~~h~~gal~~  241 (954)
T PRK12566        209 VFGALLQYPD-THGEI---RDLRPLIDQLHGQQALAC  241 (954)
T ss_pred             EEEEEEECCC-CceEE---ccHHHHHHHHHHcCCEEE
Confidence            5666667774 56776   568889999999987755

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=87.67  E-value=17  Score=34.61  Aligned_cols=218  Identities=14%  Similarity=0.111  Sum_probs=109.8

Q ss_pred             hhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHH---HHHHH-HhcCC
Q 017967           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNK---VTAEL-LFGAD  143 (363)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~---aia~~-l~~~~  143 (363)
                      +..+.+.=+..+. .-|.|=.-++       +...+|.+++-..+......+|+.  ..|-.++..   .+++- -...+
T Consensus        28 v~~ii~~Ek~RQ~-~gieLIaSEN-------Fts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF   99 (477)
T KOG2467|consen   28 VHDIIEKEKERQK-RGIELIASEN-------FTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAF   99 (477)
T ss_pred             HHHHHHHHHHhhh-cceeEeeccc-------chHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHh
Confidence            4555543333332 5567664443       235677777766654333233322  112223332   22211 11123


Q ss_pred             CCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCC---------CCeEEEecccCCCCC
Q 017967          144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDAR---------VPWSEYRYYDPKTVG  213 (363)
Q Consensus       144 ~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~-~~~~G---------~~~~~v~~~~~~~~~  213 (363)
                      +.+-+.+.|- +|..+|+.|...+  ..+++.|+|+|.-.+.--.++... +..-+         .+-.+|.++ +.++-
T Consensus       100 ~ldp~kWGVN-VQp~SGSPANfav--Ytall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~-~~TG~  175 (477)
T KOG2467|consen  100 GLDPEKWGVN-VQPYSGSPANFAV--YTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVD-PSTGY  175 (477)
T ss_pred             CCCHHHCcee-eccCCCCchhhHH--HhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeC-CCCCc
Confidence            3333344443 3667888886666  556678999987666433333210 11111         122233443 45778


Q ss_pred             CCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCC-CCCcCCCCCCchhHHHHHHhc
Q 017967          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATR  292 (363)
Q Consensus       214 ~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~  292 (363)
                      +|.|.||+.-..  -++++++-..-..|  ..+.-+++++|   |.+.|.+++.|.+. +++.-.+.-++  ++    + 
T Consensus       176 IDYD~Le~~A~~--frPk~iiaG~SaY~--R~~DYaR~R~I---ad~~gA~Lm~DMAHISgLVAA~vips--PF----e-  241 (477)
T KOG2467|consen  176 IDYDKLEKTATL--FRPKLIIAGTSAYS--RLIDYARFRKI---ADKVGAYLMADMAHISGLVAAGVIPS--PF----E-  241 (477)
T ss_pred             eehHHHHHHHHh--cCCcEEEeccccch--hhccHHHHHHH---HHhcCceeehhhhhHHHHHhcccCCC--cc----c-
Confidence            899999987553  24556653222222  33444455554   77889999999996 23332221110  11    1 


Q ss_pred             CCeEEEEEcCccccccccccceEE
Q 017967          293 GMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       293 ~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                       --.|+..+-.|.+  -|-|-|.|
T Consensus       242 -y~DiVTTTTHKsL--RGPRg~mI  262 (477)
T KOG2467|consen  242 -YCDIVTTTTHKSL--RGPRGAMI  262 (477)
T ss_pred             -ccceeeccccccc--cCCcceeE
Confidence             1235566667766  47777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	363
3pd6_A	401	Crystal Structure Of Mouse Mitochondrial Aspartate		6e-95
3hlm_A	401	Crystal Structure Of Mouse Mitochondrial Aspartate		3e-94
7aat_A	401	X-Ray Structure Refinement And Comparison Of Three		2e-93
1aka_A	401	Structural Basis For The Catalytic Activity Of Aspa		7e-93
2cst_A	411	Crystal Structure Of The Closed Form Of Chicken Cyt		6e-79
1aat_A	411	Oxoglutarate-Induced Conformational Changes In Cyto		2e-78
1ajs_A	412	Refinement And Comparison Of The Crystal Structures		3e-76
1ajr_A	412	Refinement And Comparison Of The Crystal Structures		2e-75
1asl_A	396	Crystal Structures Of Escherichia Coli Aspartate Am		2e-74
3aat_A	396	Activity And Structure Of The Active-Site Mutants R		2e-74
1ix6_A	396	Aspartate Aminotransferase Active Site Mutant V39f		3e-74
4f5m_A	406	Wild-type E. Coli Aspartate Aminotransferase: A Tem		3e-74
3ii0_A	422	Crystal Structure Of Human Glutamate Oxaloacetate T		4e-74
1asf_A	396	The Structural Basis For The Reduced Activity Of Th		4e-74
1aia_A	396	Structural Basis For The Catalytic Activity Of Aspa		5e-74
2q7w_A	396	Structural Studies Reveals The Inactivation Of E. C		7e-74
2aat_A	396	2.8-Angstroms-Resolution Crystal Structure Of An Ac		8e-74
2d5y_A	396	Aspartate Aminotransferase Mutant Mc With Isovaleri		1e-73
1aam_A	396	The Structural Basis For The Altered Substrate Spec		1e-73
1g7w_A	396	Aspartate Aminotransferase Active Site Mutant N194a		1e-73
1asb_A	396	The Structural Basis For The Reduced Activity Of Th		2e-73
1arh_A	396	Aspartate Aminotransferase, Y225rR386A MUTANT Lengt		2e-73
1ix8_A	396	Aspartate Aminotransferase Active Site Mutant V39fN		3e-73
1b4x_A	396	Aspartate Aminotransferase From E. Coli, C191s Muta		4e-73
1g4v_A	396	Aspartate Aminotransferase Active Site Mutant N194a		4e-73
1qit_A	396	Aspartate Aminotransferase From Escherichia Coli, C		5e-73
1qis_A	396	Aspartate Aminotransferase From Escherichia Coli, C		5e-73
1qir_A	396	Aspartate Aminotransferase From Escherichia Coli, C		5e-73
1ari_A	396	Aspartate Aminotransferase, W140h Mutant, Maleate C		6e-73
1bqa_A	396	Aspartate Aminotransferase P195a Mutant Length = 39		6e-73
1g4x_A	396	Aspartate Aminotransferase Active Site Mutant N194a		1e-72
1g7x_A	396	Aspartate Aminotransferase Active Site Mutant N194a		1e-72
1ahy_A	396	Aspartate Aminotransferase Hexamutant Length = 396		3e-72
1bqd_A	396	Aspartate Aminotransferase P138aP195A DOUBLE MUTANT		5e-72
3zzj_A	396	Structure Of An Engineered Aspartate Aminotransfera		5e-72
2d61_A	396	Aspartate Aminotransferase Mutant Ma With Maleic Ac		5e-72
1toe_A	396	Unliganded Structure Of Hexamutant + A293d Mutant O		1e-71
4f5f_A	406	Structure Of Aspartate Aminotransferase Conversion		2e-71
1czc_A	396	Aspartate Aminotransferase Mutant Atb17139S142N WIT		3e-71
2d66_A	396	Aspartate Aminotransferase Mutant Mab Length = 396		8e-71
2d64_A	396	Aspartate Aminotransferase Mutant Mabc With Isovale		8e-71
4eu1_A	409	Structure Of A Mitochondrial Aspartate Aminotransfe		8e-71
4f5j_A	406	Rational Design And Directed Evolution For Conversi		1e-70
1yoo_A	396	Aspartate Aminotransferase Mutant Atb17 With Isoval		3e-70
4f5i_A	406	Substrate Specificity Conversion Of E. Coli Pyridox		4e-70
4f5h_A	406	Intercoversion Of Substrate Specificity: E. Coli As		4e-70
4f5g_A	406	Rational Design And Directed Evolution Of E. Coli A		5e-70
1toj_A	396	Hydrocinnamic Acid-Bound Structure Of Srhept Mutant		1e-69
1tog_A	396	Hydrocinnamic Acid-Bound Structure Of Srhept + A293		1e-69
4f5k_A	406	Substrate Specificity Conversion Of Aspartate Amino		2e-69
4h51_A	420	Crystal Structure Of A Putative Aspartate Aminotran		6e-68
1yaa_A	412	Aspartate Aminotransferase From Saccharomyces Cerev		5e-67
3meb_A	448	Structure Of Cytoplasmic Aspartate Aminotransferase		3e-66
4f4e_A	420	Crystal Structure Of Aromatic-Amino-Acid Aminotrans		5e-65
4eff_A	420	Crystal Structure Of Aromatic-Amino-Acid Aminotrans		5e-65
3tat_A	397	Tyrosine Aminotransferase From E. Coli Length = 397		9e-65
3fsl_A	397	Crystal Structure Of Tyrosine Aminotransferase Trip		9e-65
3uak_A	406	Crystal Structure Of De Novo Designed Cysteine Este		3e-62
1ay4_A	394	Aromatic Amino Acid Aminotransferase Without Substr		2e-57
3k7y_A	405	Aspartate Aminotransferase Of Plasmodium Falciparum		9e-41
3rq1_A	418	Crystal Structure Of Aminotransferase Class I And I		4e-11
4emy_A	413	Crystal Structure Of Aminotransferase From Anaeroco		2e-06

>pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate Aminotransferase, A Newly Identified Kynurenine Aminotransferase-Iv Length = 401

Iteration: 1
 Score =  343 bits (881), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 162/290 (55%), Positives = 207/290 (71%), Gaps = 1/290 (0%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +
Sbjct: 2   SWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAK 61
Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F 
Sbjct: 62  NLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFK 121
Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
            ++ V +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI   P  S +LLH
Sbjct: 122 FSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLH 181
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP PEQW++IA V+++KN   FFD+AYQGFASG  D DA +VR F  +G+ 
Sbjct: 182 ACAHNPTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGIN 241
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           + + QSY+KN+GLY ER+GA  VVC  ++ A RV+SQLK L RP+YSNPP
Sbjct: 242 VCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPP 291

>pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate AminotransferaseKYNURENINE AMINOTRANSFERASE IV Length = 401

Iteration: 1
 Score =  342 bits (876), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 161/290 (55%), Positives = 206/290 (71%), Gaps = 1/290 (0%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +
Sbjct: 2   SWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAK 61
Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F 
Sbjct: 62  NLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFK 121
Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
            ++ V +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI   P  S +LLH
Sbjct: 122 FSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLH 181
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP PEQW++IA V+++KN   FFD+AYQGFASG  D DA +VR F  +G+ 
Sbjct: 182 ACAHNPTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGIN 241
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           + + QSY+ N+GLY ER+GA  VVC  ++ A RV+SQLK L RP+YSNPP
Sbjct: 242 VCLCQSYAXNMGLYGERVGAFTVVCKDAEEAKRVESQLKILIRPLYSNPP 291

>pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms Of Mitochondrial Aspartate Aminotransferase Length = 401

Iteration: 1
 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 157/301 (52%), Positives = 217/301 (72%), Gaps = 3/301 (0%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61
Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121
Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
            ++ V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSS 355
           ++++QSY+KN+GLY ER GA  V+C  ++ A RV+SQLK L RPMYSNPP  + G +++S
Sbjct: 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPP--MNGARIAS 299
Query: 356 M 356
           +
Sbjct: 300 L 300

>pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking Its Pyridoxal-5'-Phosphate-Binding Lysine Residue Length = 401

Iteration: 1
 Score =  337 bits (864), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 156/301 (51%), Positives = 216/301 (71%), Gaps = 3/301 (0%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61
Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121
Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
            ++ V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSS 355
           ++++QSY+ N+GLY ER GA  V+C  ++ A RV+SQLK L RPMYSNPP  + G +++S
Sbjct: 242 VVLSQSYAHNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPP--MNGARIAS 299
Query: 356 M 356
           +
Sbjct: 300 L 300

>pdb|2CST|A Chain A, Crystal Structure Of The Closed Form Of Chicken Cytosolic Aspartate Aminotransferase At 1.9 Angstroms Resolution Length = 411

Iteration: 1
 Score =  291 bits (744), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 142/296 (47%), Positives = 192/296 (64%), Gaps = 7/296 (2%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  APP  +  ++  F+ D D +K+NLGVGAYRT+E QP+VL VV+K E L+   
Sbjct: 3   SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGD 62
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           G  N EYLPI GL  F    + +  G D+  + ++RV +VQGL GTG+LR+ A  + R++
Sbjct: 63  GSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRRWY 122
Query: 176 PG-----AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH ++F DA       YRY+D    GLD +G++ D++ AP  
Sbjct: 123 NGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLDDMEKAPEF 182
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTP++W++IA V++ +   PFFD AYQGFASGSLD DA +VR F
Sbjct: 183 SIFILHACAHNPTGTDPTPDEWKQIAAVMKRRCLFPFFDSAYQGFASGSLDKDAWAVRYF 242
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            + G EL  AQS+SKN GLY ER+G ++VV    D   RV SQ++++ R  +SNPP
Sbjct: 243 VSEGFELFCAQSFSKNFGLYNERVGNLSVVGKDEDNVQRVLSQMEKIVRTTWSNPP 298

>pdb|1AAT|A Chain A, Oxoglutarate-Induced Conformational Changes In Cytosolic Aspartate Aminotransferase Length = 411

Iteration: 1
 Score =  289 bits (739), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 140/296 (47%), Positives = 193/296 (65%), Gaps = 7/296 (2%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  APP  +  ++  F+ D D +K+NLGVGAYRT+E QP+VL VV+K E L+   
Sbjct: 3   SIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGN 62
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
           G  N EYLPI GL  F    + +  G D+  + ++RV +VQGL GTG+LR+ A  + R++
Sbjct: 63  GSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRRWY 122
Query: 176 PG-----AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH ++F DA       YRY+D    GLD +G+++D++ AP  
Sbjct: 123 NGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLSDMEKAPEF 182
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTP++W++IA V++ +   PFFD AYQGFASG+L+ DA +VR F
Sbjct: 183 SIFILHACAHNPTGTDPTPDEWKQIAAVMKRRCLFPFFDSAYQGFASGNLEKDAWAVRYF 242
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            + G EL  AQS+SKN GLY ER+G ++VV    D   RV SQ++++ R  +SNPP
Sbjct: 243 VSEGFELFCAQSFSKNFGLYNERVGNLSVVGKDEDNVQRVLSQMEKIVRTTWSNPP 298

>pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412

Iteration: 1
 Score =  281 bits (720), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 139/296 (46%), Positives = 186/296 (62%), Gaps = 7/296 (2%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123
Query: 176 PGAK-----VLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            + G EL  AQS+SKN GLY ER+G + VV    D   RV SQ++++ R  +SNPP
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPP 299

>pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412

Iteration: 1
 Score =  279 bits (714), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/296 (46%), Positives = 185/296 (62%), Gaps = 7/296 (2%)
Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63
Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123
Query: 176 PGAK-----VLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            G       V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183
Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243
Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            + G EL  AQS+S N GLY ER+G + VV    D   RV SQ++++ R  +SNPP
Sbjct: 244 VSEGFELFCAQSFSXNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPP 299

>pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate Aminotransferase In Two Conformations: Comparison Of An Unliganded Open And Two Liganded Closed Forms Length = 396

Iteration: 1
 Score =  276 bits (705), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/287 (47%), Positives = 182/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y And R386f Of Escherichia Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  276 bits (705), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/287 (47%), Positives = 182/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Length = 396

Iteration: 1
 Score =  275 bits (703), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/287 (47%), Positives = 182/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGFYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template For The Interconversion Of Substrate Specificity And Activity To Tyrosine Aminotransferase By The Janus Algorithm. Length = 406

Iteration: 1
 Score =  275 bits (702), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 135/290 (46%), Positives = 182/290 (62%), Gaps = 1/290 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +  
Sbjct: 69  NETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           L+VA SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 248 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 297

>pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate Transaminase 1 (Got1) Length = 422

Iteration: 1
 Score =  275 bits (702), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/286 (46%), Positives = 184/286 (64%), Gaps = 7/286 (2%)
Query: 67  PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLERGENKEYLPI 125
           P  +  ++  F+ D D +K+NLGVGAYRT++  P+VL VVKK E  +  +   N EYLPI
Sbjct: 3   PVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPI 62
Query: 126 EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-----V 180
            GLA F    + L  G D+  LKE+RV  VQ L GTG+LR+ A  + R++ G       V
Sbjct: 63  LGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPV 122
Query: 181 LISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239
            +SSPTW NH  +F+ A       YRY+D +  GLD +G + D++ AP  S ++LH CAH
Sbjct: 123 YVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAH 182
Query: 240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA 299
           NPTGIDPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F + G E   A
Sbjct: 183 NPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCA 242
Query: 300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           QS+SKN GLY ER+G + VV    +   +V SQ++++ R  +SNPP
Sbjct: 243 QSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPP 288

>pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  274 bits (701), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 182/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD A+QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAFQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking The Pyridoxal-5'-Phosphate Binding Lysine Residue Length = 396

Iteration: 1
 Score =  274 bits (701), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSHNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli L-Aspartate Aminotransferase (S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta) Via Two Mechanisms At Ph 6.0 Length = 396

Iteration: 1
 Score =  274 bits (700), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An Active-Site Mutant Of Aspartate Aminotransferase From Escherichia Coli Length = 396

Iteration: 1
 Score =  273 bits (699), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSANFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid Length = 396

Iteration: 1
 Score =  273 bits (698), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 182/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPP 287

>pdb|1AAM|A Chain A, The Structural Basis For The Altered Substrate Specificity Of The R292d Active Site Mutant Of Aspartate Aminotransferase From E. Coli Length = 396

Iteration: 1
 Score =  273 bits (698), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K      YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIDANYSNPP 287

>pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L Length = 396

Iteration: 1
 Score =  273 bits (697), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1ASB|A Chain A, The Structural Basis For The Reduced Activity Of The D223a(D222a) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  272 bits (696), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P F  AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFAFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT Length = 396

Iteration: 1
 Score =  272 bits (696), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD A QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFARQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A Length = 396

Iteration: 1
 Score =  272 bits (695), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGFYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  271 bits (694), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGSC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194a/y225f Length = 396

Iteration: 1
 Score =  271 bits (693), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 133/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD A+QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAFQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  271 bits (693), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGWC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  271 bits (692), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGFC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y Mutation, With Bound Maleate Length = 396

Iteration: 1
 Score =  271 bits (692), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HG  
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGYC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex Length = 396

Iteration: 1
 Score =  271 bits (692), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+  NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSHPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant Length = 396

Iteration: 1
 Score =  270 bits (691), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 133/287 (46%), Positives = 180/287 (62%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HN TGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNATGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|1G4X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292L Length = 396

Iteration: 1
 Score =  270 bits (689), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/287 (46%), Positives = 180/287 (62%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K      YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAILANYSNPP 287

>pdb|1G7X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292LR386L Length = 396

Iteration: 1
 Score =  269 bits (688), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/287 (46%), Positives = 180/287 (62%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           H PTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HAPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K      YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAILANYSNPP 287

>pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant Length = 396

Iteration: 1
 Score =  268 bits (686), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGLYYDETGKIPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPP 287

>pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT Length = 396

Iteration: 1
 Score =  268 bits (684), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 132/287 (45%), Positives = 179/287 (62%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+ +W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNASWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HN TGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNATGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>pdb|3ZZJ|A Chain A, Structure Of An Engineered Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  267 bits (683), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 133/287 (46%), Positives = 179/287 (62%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGQGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD A QGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAQQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K      YSNPP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIYANYSNPP 287

>pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid Length = 396

Iteration: 1
 Score =  267 bits (683), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 132/287 (45%), Positives = 180/287 (62%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPP 287

>pdb|1TOE|A Chain A, Unliganded Structure Of Hexamutant + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  266 bits (680), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 132/287 (45%), Positives = 180/287 (62%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGLYYDETGKIPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRDNYSSPP 287

>pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To Tyrosine Aminotransferase: Chimera P1. Length = 406

Iteration: 1
 Score =  265 bits (678), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 132/290 (45%), Positives = 178/290 (61%), Gaps = 1/290 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+ A  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVGADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTGIDPT EQW+ +A +  EK  +P  D AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLIDFAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           L+VA SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 248 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 297

>pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH GLUTARIC ACID Length = 396

Iteration: 1
 Score =  265 bits (677), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 131/287 (45%), Positives = 179/287 (62%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVR 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+G   +V + S+   R  SQ+K   R  YS+PP
Sbjct: 241 ASSYSKNFGLYNERVGTCTLVAADSETVDRAFSQMKAAIRVNYSSPP 287

>pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab Length = 396

Iteration: 1
 Score =  264 bits (674), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 131/287 (45%), Positives = 178/287 (62%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P W  HK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPP 287

>pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric Acid Length = 396

Iteration: 1
 Score =  263 bits (673), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 131/287 (45%), Positives = 178/287 (62%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P W  HK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRVNYSSPP 287

>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase From Trypanosoma Brucei Length = 409

Iteration: 1
 Score =  263 bits (673), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 128/285 (44%), Positives = 181/285 (63%), Gaps = 8/285 (2%)
Query: 63  TMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY 122
           +M  PDPILG+ + F+ D  ++K+NL +G YR +  QP+VL+ VK+A       G N +Y
Sbjct: 21  SMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQAT-----LGTNMDY 75
Query: 123 LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLI 182
            P+ G+A+F +   +L FG   + L++ R+A+ Q L GTG+LR+   L+ R+       I
Sbjct: 76  APVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCN-RI 134
Query: 183 SSPTWG--NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
             P  G  NH++IF  A +  + Y YYDP T GL+  GM+  +  AP GS IL+H CAHN
Sbjct: 135 YGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHN 194
Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+DPT + W ++ DVI+ +NHIPF D+AYQGFA+G LD DA   R        L+VAQ
Sbjct: 195 PTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQ 254
Query: 301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           S+S N GLY  R GA+++  +S++ A R+ SQL  L RPMY+NPP
Sbjct: 255 SFSXNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPP 299

>pdb|4F5J|A Chain A, Rational Design And Directed Evolution For Conversion Of Substrate Specificity From E.coli Aspartate Aminotransferase To Tyrosine Aminotransferase: Mutant P5. Length = 406

Iteration: 1
 Score =  263 bits (671), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 131/290 (45%), Positives = 178/290 (61%), Gaps = 1/290 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           L+VA S S N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 248 LIVASSCSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 297

>pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric Acid Length = 396

Iteration: 1
 Score =  261 bits (668), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 130/287 (45%), Positives = 177/287 (61%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++  +AD    K++LG+G Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITTAPADPILGLADLLRADERPGKIDLGMGVYNDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVR 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P W  HK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPGWPTHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY ER+G   +V + S+   R  SQ+K   R  YS+PP
Sbjct: 241 ASSYSKNFGLYNERVGTCTLVAADSETVDRAFSQMKAAIRVNYSSPP 287

>pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli Pyridoxal-5'-phosphate Dependent Aspartate Aminotransferase To Tyrosine Aminotransferase: Chimera P4. Length = 406

Iteration: 1
 Score =  261 bits (668), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 130/290 (44%), Positives = 178/290 (61%), Gaps = 1/290 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  V+  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVMTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+PTW NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPTWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTGIDPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           L+VA S S N  LY ER+GA  +V + S+   R  SQ+K   R  YS+PP
Sbjct: 248 LIVASSCSXNFSLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPP 297

>pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate Aminotransferase To Tyrosine Aminotransferase: Chimera P3. Length = 406

Iteration: 1
 Score =  261 bits (667), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 129/290 (44%), Positives = 178/290 (61%), Gaps = 1/290 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LG+G Y+ E  +  V+  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGIGVYKDETGKTPVMTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDFAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           L+VA SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YS+PP
Sbjct: 248 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPP 297

>pdb|4F5G|A Chain A, Rational Design And Directed Evolution Of E. Coli Apartate Aminotransferase To Tyrosine Aminotransferase: Mutant P2. Length = 406

Iteration: 1
 Score =  261 bits (667), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 130/290 (44%), Positives = 177/290 (61%), Gaps = 1/290 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  VL  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVLTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+P+W NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPSWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           L+VA S S N GLY ER+GA  +V + S+   R   Q+K   R  YSNPP
Sbjct: 248 LIVASSCSXNFGLYNERVGACTLVAADSETVDRAFGQMKAAIRANYSNPP 297

>pdb|1TOJ|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/287 (44%), Positives = 177/287 (61%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T    DPILG+++ F+AD    K++LG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITATTADPILGLADLFRADERPGKIDLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYS N  LY ER+GA  +V + S+   R   Q+K   R  YS+PP
Sbjct: 241 ASSYSXNFALYNERVGACTLVAADSETVDRAFGQMKAAIRANYSSPP 287

>pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396

Iteration: 1
 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/287 (44%), Positives = 177/287 (61%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T    DPILG+++ F+AD    K++LG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITATTADPILGLADLFRADERPGKIDLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYS N  LY ER+GA  +V + S+   R   Q+K   R  YS+PP
Sbjct: 241 ASSYSXNFALYNERVGACTLVAADSETVDRAFGQMKAAIRDNYSSPP 287

>pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate Aminotransferase To Tyrosine Aminotransferase By The Janus Algorithm: Chimera P6. Length = 406

Iteration: 1
 Score =  259 bits (662), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 129/290 (44%), Positives = 176/290 (60%), Gaps = 1/290 (0%)
Query: 56  VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE 115
           V  FE +T AP DPILG+++ F+AD    K++LGVG Y+ E  +  V+  VKKAE  +LE
Sbjct: 9   VGTFENITAAPADPILGLADLFRADERPGKVDLGVGVYKDETGKTPVMTSVKKAEQYLLE 68
Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
               K YL ++GL  F + T ELLFG  ++++ ++R  T Q   G+G+LR+AA  + +  
Sbjct: 69  NETTKTYLGLDGLPEFGRCTQELLFGKGSALINDKRARTAQTPGGSGALRVAADFLAKNT 128
Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
              +V +S+PTW NHK IFN A +   EY YYD +   LDF+ +I  +  A  G  +L H
Sbjct: 129 SVKRVWVSNPTWPNHKAIFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFH 188
Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
           GC HNPTG DPT EQW+ +A +  EK  +P  D+AYQGF  G L+ DA  +R FA    E
Sbjct: 189 GCCHNPTGADPTLEQWQTLAQLSVEKGWLPLIDIAYQGFGRG-LEEDAEGLRAFAAMHKE 247
Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           L+VA S S N  LY ER+GA  +V + S+   R   Q+K   R  YSNPP
Sbjct: 248 LIVASSCSXNFSLYNERVGACTLVAADSETVDRAFGQMKAAIRANYSNPP 297

>pdb|4H51|A Chain A, Crystal Structure Of A Putative Aspartate Aminotransferase From Leishmania Major Friedlin Length = 420

Iteration: 1
 Score =  254 bits (648), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 142/322 (44%), Positives = 193/322 (59%), Gaps = 14/322 (4%)
Query: 49  SMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKK 108
           +  A     R++ +    PD I  +++   A     K NL +GAYR E+ +PY L VV+K
Sbjct: 11  TQAAMTTAERWQKIQAQAPDVIFDLAKR-AAAAKGPKANLVIGAYRDEQGRPYPLRVVRK 69
Query: 109 AENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAA 168
           AE L+L+   + EYLPI G   F     ++++G  N+V  E  VA VQ LSGTG++ L A
Sbjct: 70  AEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYG--NTVELENLVA-VQTLSGTGAVSLGA 126
Query: 169 ALIERYFPGAK--VLISSPTWGNHKNIFNDARVPWSE---YRYYDPKTVGLDFEGMIADI 223
            L+ R F      + +S PTW NH  +   A   W     Y YYDPKTV L+FEGM  DI
Sbjct: 127 KLLTRVFDAETTPIYLSDPTWPNHYGVVKAA--GWKNICTYAYYDPKTVSLNFEGMKKDI 184
Query: 224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA 283
            AAP GS  +LH CAHNPTG+DP+ EQW +IA ++  K+H  FFD AYQG+ASGSLD DA
Sbjct: 185 LAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDA 244
Query: 284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSN 343
            + RLFA RG+E+L+AQS+S N+GLY+ER G ++++       A VKS +  L R  Y+ 
Sbjct: 245 YAARLFARRGIEVLLAQSFSXNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTC 304
Query: 344 PPPM---LLGIQLSSMNGKQRW 362
           PP     L  + LS+   ++ W
Sbjct: 305 PPAHGARLAHLILSNNELRKEW 326

>pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae Cytoplasm Length = 412

Iteration: 1
 Score =  251 bits (641), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 177/299 (59%), Gaps = 16/299 (5%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERG 117
           F  + + PPD + G+ + +  D    K++LG+GAYR +  +P+VL  VK AE L+  +  
Sbjct: 5   FNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS 64
Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
            N EYL I GL +     A+++FG  +  L+E RV +VQ LSGTG+L ++A    ++FP 
Sbjct: 65  YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPD 124
Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
             V +S PTW NH  IF +  +  + Y Y+  +T  LD  G +  I+ AP GS  +LH C
Sbjct: 125 KLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSC 184
Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-- 295
           AHNPTG+DPT EQW +I D I  KNHI  FD AYQGFA+G LD DA +VRL    G+E  
Sbjct: 185 AHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRL----GVEKL 240
Query: 296 -----LLVAQSYSKNLGLYAERIGAMNVVCS----SSDLAARVKSQLKRLARPMYSNPP 345
                + V QS++KN G+Y ER+G  ++  +    +  +   V SQL ++ R   SNPP
Sbjct: 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPP 299

>pdb|3MEB|A Chain A, Structure Of Cytoplasmic Aspartate Aminotransferase From Giardia Lamblia Length = 448

Iteration: 1
 Score =  248 bits (634), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/272 (45%), Positives = 172/272 (63%), Gaps = 7/272 (2%)
Query: 55  NVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML 114
           ++S F G   +PPD IL ++  + ADT+ KK+NLGVGAYR E  +P++L  VK+AE ++ 
Sbjct: 21  SMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIIS 80
Query: 115 E--RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE 172
                 NKEY P+ G   F +    L+FG D+   +E R+A+ Q LSGTGSL +    + 
Sbjct: 81  SDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLH 140
Query: 173 RYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAP 227
            + P A+  + S TW NH  I    FN  +VP+ EY Y      + +DF     DI++AP
Sbjct: 141 LWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAP 200
Query: 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR 287
             S  L H CAHNP+GID T  QW+++  +++EK HI FFD AYQGFA+GS + DA +VR
Sbjct: 201 EKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVR 260
Query: 288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVV 319
           +F   G+E+LVAQS+SKN GLY ERIG ++VV
Sbjct: 261 MFVDAGVEVLVAQSFSKNFGLYGERIGCLHVV 292

>pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Covalently Bound To Pyridoxal Phosphate Length = 420

Iteration: 1
 Score =  244 bits (623), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 129/291 (44%), Positives = 189/291 (64%), Gaps = 1/291 (0%)
Query: 55  NVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML 114
           ++S F  V +AP DPILG++EAF ADT   K+NLGVG Y  E+ +  +L  V+ AE   +
Sbjct: 21  SMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARV 80
Query: 115 ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY 174
           E G  + YLPI+G+AA++    +LL G D+ ++   RV T Q L GTG+L++ A  +   
Sbjct: 81  EAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL 140
Query: 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL 234
            P AKV IS P+W NH+ +F+ A      Y YYD KT G++F+GM+A +     G+ ++L
Sbjct: 141 NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVL 200
Query: 235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294
           H C HNPTG+D    QW ++ +V++ +  +PF D+AYQGF   S++ DA++VRLFA   +
Sbjct: 201 HACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGE-SIEADAAAVRLFAAANL 259
Query: 295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            + V+ S+S +  LY ER+GA++++  S D AARV SQLKR+ R  YSNPP
Sbjct: 260 NVFVSSSFSXSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPP 310

>pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Length = 420

Iteration: 1
 Score =  244 bits (623), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 130/291 (44%), Positives = 190/291 (65%), Gaps = 1/291 (0%)
Query: 55  NVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML 114
           ++S F  V +AP DPILG++EAF ADT   K+NLGVG Y  E+ +  +L  V+ AE   +
Sbjct: 21  SMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARV 80
Query: 115 ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY 174
           E G  + YLPI+G+AA++    +LL G D+ ++   RV T Q L GTG+L++ A  +   
Sbjct: 81  EAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL 140
Query: 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILL 234
            P AKV IS P+W NH+ +F+ A      Y YYD KT G++F+GM+A +     G+ ++L
Sbjct: 141 NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVL 200
Query: 235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM 294
           H C HNPTG+D    QW ++ +V++ +  +PF D+AYQGF   S++ DA++VRLFA   +
Sbjct: 201 HACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGE-SIEADAAAVRLFAAANL 259
Query: 295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            + V+ S+SK+  LY ER+GA++++  S D AARV SQLKR+ R  YSNPP
Sbjct: 260 NVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPP 310

>pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli Length = 397

Iteration: 1
 Score =  243 bits (621), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 122/288 (42%), Positives = 175/288 (60%), Gaps = 2/288 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+ + P +  V +    L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61
Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121
Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K  P  S +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPC 181
Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240
Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           V+ S+SK   LY ER+G ++V+C  ++ A RV  QLK   R  YS+PP
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPP 288

>pdb|3FSL|A Chain A, Crystal Structure Of Tyrosine Aminotransferase Tripple Mutant (P181q, R183g,A321k) From Escherichia Coli At 2.35 A Resolution Length = 397

Iteration: 1
 Score =  243 bits (621), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 122/288 (42%), Positives = 175/288 (60%), Gaps = 2/288 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEE-LQPYVLDVVKKAENLMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+ + P +  V +    L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61
Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121
Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K    GS +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPC 181
Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240
Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           V+ S+SK   LY ER+G ++V+C  ++ A RV  QLK   R  YS+PP
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPP 288

>pdb|3UAK|A Chain A, Crystal Structure Of De Novo Designed Cysteine Esterase Ech14, Northeast Structural Genomics Consortium Target Or54 Length = 406

Iteration: 1
 Score =  235 bits (600), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/287 (42%), Positives = 169/287 (58%), Gaps = 1/287 (0%)
Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPI G+++ F+AD    K+NLG+  Y  E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPIYGLADLFRADERPGKINLGLALYYDETGKIPVLTSVKKAEQYLLENET 61
Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   G G+LR+AA  + +     
Sbjct: 62  TKLYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGHGALRVAADFLAKNTSVK 121
Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V + +P+    K++FN A +   EY YYD +   LDF+ +I  +  A  G  +L  GC 
Sbjct: 122 RVWVYNPSSNCSKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFTGCC 181
Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P F   YQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFTFFYQGFARG-LEEDAEGLRAFAAXHKELIV 240
Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYSKN GLY E +GA  +V + S+   R  SQ K   R  YS+PP
Sbjct: 241 ASSYSKNFGLYNESVGACTLVAADSETVDRAFSQXKAAIRDNYSSPP 287

>pdb|1AY4|A Chain A, Aromatic Amino Acid Aminotransferase Without Substrate Length = 394

Iteration: 1
 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/279 (40%), Positives = 158/279 (56%), Gaps = 4/279 (1%)
Query: 67  PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE 126
           PD IL +   F+AD  + K++LGVG Y+       ++  V  AE  MLE    K Y  + 
Sbjct: 10  PDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLS 69
Query: 127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPT 186
           G   F K   EL+ G     LK +  AT+  + GTG+LR A  L     P  +V +S PT
Sbjct: 70  GEPEFQKAMGELILG---DGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPT 126
Query: 187 WGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP 246
           W NH +I N   +P   YRY+D +T G+DFEGM AD+ AA  G  +LLHGC HNPTG + 
Sbjct: 127 WPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANL 186
Query: 247 TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL 306
           T +QW +IA ++++   +P  D+AYQGF  G L+ DA+  RL A+R  E+L+A S SKN 
Sbjct: 187 TLDQWAEIASILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLIAASCSKNF 245
Query: 307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           G+Y ER G +  +C+ +      +  +  L R  YS PP
Sbjct: 246 GIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPP 284

>pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum Length = 405

Iteration: 1
 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 151/277 (54%), Gaps = 1/277 (0%)
Query: 68  DPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEG 127
           D IL  +  FK DT E+K+NL +G    ++   ++ D V  A+ L+ E  + K YL   G
Sbjct: 14  DNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTENYKEKPYLLGNG 73
Query: 128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW 187
              F+ +T  L+FG ++  ++++++ T+Q + GTG++ +    + +      + +++P +
Sbjct: 74  TEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFL-KMLNVETLYVTNPPY 132
Query: 188 GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT 247
            NH N+            ++D   + ++++  + D++  P GS ++L    +NP  ++  
Sbjct: 133 INHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIE 192
Query: 248 PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG 307
            + +++I +++  K H+  FD+AYQGF   +L+ D   +R F  + +   V QS+SKN+ 
Sbjct: 193 EKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMS 252
Query: 308 LYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNP 344
           LY ER GA+++VC + +    V + L  + R  YS+P
Sbjct: 253 LYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSP 289

>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From Veillonella Parvula Length = 418

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 114/277 (41%), Gaps = 19/277 (6%)
Query: 78  KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE 137
           K +  E  +N  +GA   EE     L  VK+ E L L   E+  Y PI G+  F     +
Sbjct: 33  KENGRENVVNGTLGAIHDEEGNLVFLKTVKE-EYLSLSDSEHVGYAPIAGIPDFLCAAEK 91
Query: 138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNIFND 196
             FG   +   E  + ++    GTG +     LI  Y  PG +VL +   WG ++ I +D
Sbjct: 92  ECFG---NFRPEGHIRSIATAGGTGGIH---HLIHNYTEPGDEVLTADWYWGAYRVICSD 145
Query: 197 ARVPWSEYRYYDPKTV--GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI 254
                  Y  +D         F+  + ++ A      ++ +   +NPTG     + W+ I
Sbjct: 146 TGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSI 205
Query: 255 ADVIQE------KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL--VAQSYSKNL 306
            + +++       N I   DVAY  + SG  D   +    F+    E+L  V  S SK  
Sbjct: 206 LNFLKDLVAIGRNNVIIGIDVAYLDY-SGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGF 264
Query: 307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSN 343
             Y +R+GA   +    ++A       K  +R  +SN
Sbjct: 265 TXYGQRVGAXIGISDDEEIADEFFEVNKSTSRATWSN 301

>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus Prevotii Dsm 20548. Length = 413

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 26/244 (10%)
Query: 115 ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY 174
           +R     Y PIEG   + K+  + LFG       E  ++ +    GTG++R  +A+    
Sbjct: 68  DRSHIASYAPIEGEKDYRKIVIDTLFG---PYKPEGYISAIATPGGTGAIR--SAIFSYL 122
Query: 175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDF------EGMIADIKAAP 227
             G  ++     W  ++ I  +    +  + ++ D     +D       EG+    + A 
Sbjct: 123 DEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIAS 182
Query: 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIP------FFDVAYQGFASGSLDN 281
                L++   +NPTG   + E+W+++   ++EK            DVAY  FA G  D 
Sbjct: 183 -----LINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFA-GDGDQ 236
Query: 282 DASSVRLFAT--RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARP 339
                  F+   R + ++VA S SK+   Y  R GA   + SS ++    ++ L   AR 
Sbjct: 237 QRKFFEKFSNLPRNLFVVVAFSXSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARC 296
Query: 340 MYSN 343
            +SN
Sbjct: 297 NWSN 300

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	0.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	1e-180
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	1e-178
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	1e-177
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	1e-176
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	1e-176
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	1e-175
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	1e-174
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	1e-173
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	1e-170
3rq1_A	418	Aminotransferase class I and II; structural genomi	1e-154
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	1e-151
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	1e-113
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	2e-06
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	3e-05
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	7e-05
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	1e-04
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	3e-04
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	3e-04
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	5e-04
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	5e-04

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* Length = 420

 Score =  508 bits (1310), Expect = 0.0
 Identities = 129/299 (43%), Positives = 189/299 (63%), Gaps = 1/299 (0%)

Query: 47  RVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVV 106
                   ++S F  V +AP DPILG++EAF ADT   K+NLGVG Y  E+ +  +L  V
Sbjct: 13  EAQTQGPGSMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAV 72

Query: 107 KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL 166
           + AE   +E G  + YLPI+G+AA++    +LL G D+ ++   RV T Q L GTG+L++
Sbjct: 73  RDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKI 132

Query: 167 AAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA 226
            A  +    P AKV IS P+W NH+ +F+ A      Y YYD KT G++F+GM+A +   
Sbjct: 133 GADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY 192

Query: 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV 286
             G+ ++LH C HNPTG+D    QW ++ +V++ +  +PF D+AYQGF    ++ DA++V
Sbjct: 193 EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGES-IEADAAAV 251

Query: 287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           RLFA   + + V+ S+SK+  LY ER+GA++++  S D AARV SQLKR+ R  YSNPP
Sbjct: 252 RLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPP 310

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* Length = 401

 Score =  505 bits (1302), Expect = e-180
 Identities = 155/290 (53%), Positives = 210/290 (72%), Gaps = 1/290 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121

Query: 177 GAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
            ++ V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           ++++QSY+KN+GLY ER GA  V+C  ++ A RV+SQLK L RPMYSNPP
Sbjct: 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPP 291

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405

 Score =  499 bits (1287), Expect = e-178
 Identities = 77/289 (26%), Positives = 152/289 (52%), Gaps = 1/289 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
                +     D IL  +  FK DT E+K+NL +G    ++   ++ D V  A+ L+ E 
Sbjct: 3   KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTEN 62

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP 176
            + K YL   G   F+ +T  L+FG ++  ++++++ T+Q + GTG++ +    ++    
Sbjct: 63  YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV 122

Query: 177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG 236
              + +++P + NH N+            ++D   + ++++  + D++  P GS ++L  
Sbjct: 123 -ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQI 181

Query: 237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL 296
             +NP  ++   + +++I +++  K H+  FD+AYQGF   +L+ D   +R F  + +  
Sbjct: 182 SCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAF 241

Query: 297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            V QS+SKN+ LY ER GA+++VC + +    V + L  + R  YS+P 
Sbjct: 242 SVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPV 290

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Length = 397

 Score =  496 bits (1279), Expect = e-177
 Identities = 124/288 (43%), Positives = 175/288 (60%), Gaps = 2/288 (0%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAEN-LMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+     L  V +AE  L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K    GS +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPC 181

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           V+ S+SK   LY ER+G ++V+C  ++ A RV  QLK   R  YS+PP
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPP 288

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... Length = 396

 Score =  495 bits (1277), Expect = e-176
 Identities = 134/287 (46%), Positives = 181/287 (63%), Gaps = 1/287 (0%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A SYS N GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP
Sbjct: 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPP 287

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Length = 394

 Score =  495 bits (1276), Expect = e-176
 Identities = 114/287 (39%), Positives = 159/287 (55%), Gaps = 4/287 (1%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
              +    PD IL +   F+AD  + K++LGVG Y+       ++  V  AE  MLE   
Sbjct: 2   LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K Y  + G   F K   EL+ G     LK +  AT+  + GTG+LR A  L     P  
Sbjct: 62  TKTYAGLSGEPEFQKAMGELILGDG---LKSETTATLATVGGTGALRQALELARMANPDL 118

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S PTW NH +I N   +P   YRY+D +T G+DFEGM AD+ AA  G  +LLHGC 
Sbjct: 119 RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCC 178

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTG + T +QW +IA ++++   +P  D+AYQGF  G L+ DA+  RL A+R  E+L+
Sbjct: 179 HNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDG-LEEDAAGTRLIASRIPEVLI 237

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
           A S SKN G+Y ER G +  +C+ +      +  +  L R  YS PP
Sbjct: 238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPP 284

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} Length = 409

 Score =  493 bits (1272), Expect = e-175
 Identities = 126/298 (42%), Positives = 183/298 (61%), Gaps = 6/298 (2%)

Query: 49  SMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKK 108
             +  +        +M  PDPILG+ + F+ D  ++K+NL +G YR +  QP+VL+ VK+
Sbjct: 7   HHMGTLEAQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQ 66

Query: 109 AENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAA 168
           A       G N +Y P+ G+A+F +   +L FG   + L++ R+A+ Q L GTG+LR+  
Sbjct: 67  AT-----LGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGG 121

Query: 169 ALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP 227
            L+ R+      +      + NH++IF  A +  + Y YYDP T GL+  GM+  +  AP
Sbjct: 122 DLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAP 181

Query: 228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR 287
            GS IL+H CAHNPTG+DPT + W ++ DVI+ +NHIPF D+AYQGFA+G LD DA   R
Sbjct: 182 EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPR 241

Query: 288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
                   L+VAQS+SKN GLY  R GA+++  +S++ A R+ SQL  L RPMY+NPP
Sbjct: 242 HLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPP 299

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412

 Score =  489 bits (1262), Expect = e-174
 Identities = 123/297 (41%), Positives = 176/297 (59%), Gaps = 8/297 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           + F  + + PPD + G+ + +  D    K++LG+GAYR +  +P+VL  VK AE L+  +
Sbjct: 3   TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYL I GL +     A+++FG  +  L+E RV +VQ LSGTG+L ++A    ++F
Sbjct: 63  SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFF 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
           P   V +S PTW NH  IF +  +  + Y Y+  +T  LD  G +  I+ AP GS  +LH
Sbjct: 123 PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR--- 292
            CAHNPTG+DPT EQW +I D I  KNHI  FD AYQGFA+G LD DA +VRL   +   
Sbjct: 183 SCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242

Query: 293 GMELLVAQSYSKNLGLYAERIGAMNVVCS----SSDLAARVKSQLKRLARPMYSNPP 345
              + V QS++KN G+Y ER+G  ++  +    +  +   V SQL ++ R   SNPP
Sbjct: 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPP 299

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412

 Score =  487 bits (1256), Expect = e-173
 Identities = 138/296 (46%), Positives = 185/296 (62%), Gaps = 7/296 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63

Query: 117 GE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123

Query: 176 -----PGAKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
                    V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183

Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243

Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            + G EL  AQS+SKN GLY ER+G + VV    D   RV SQ++++ R  +SNPP
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPP 299

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} Length = 448

 Score =  482 bits (1242), Expect = e-170
 Identities = 129/314 (41%), Positives = 182/314 (57%), Gaps = 15/314 (4%)

Query: 47  RVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVV 106
                   ++S F G   +PPD IL ++  + ADT+ KK+NLGVGAYR E  +P++L  V
Sbjct: 13  EAQTQGPGSMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAV 72

Query: 107 KKAENLMLE--RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL 164
           K+AE ++       NKEY P+ G   F +    L+FG D+   +E R+A+ Q LSGTGSL
Sbjct: 73  KEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSL 132

Query: 165 RLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKT-VGLDFEGM 219
            +    +  + P A+  + S TW NH  I    FN  +VP+ EY Y      + +DF   
Sbjct: 133 HIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNT 192

Query: 220 IADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL 279
             DI++AP  S  L H CAHNP+GID T  QW+++  +++EK HI FFD AYQGFA+GS 
Sbjct: 193 KKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSF 252

Query: 280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS--------SDLAARVKS 331
           + DA +VR+F   G+E+LVAQS+SKN GLY ERIG ++VV +           L+A + S
Sbjct: 253 EADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVS 312

Query: 332 QLKRLARPMYSNPP 345
            +    R  +S   
Sbjct: 313 GMTLQIRKTWSMSA 326

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418

 Score =  438 bits (1128), Expect = e-154
 Identities = 68/308 (22%), Positives = 118/308 (38%), Gaps = 21/308 (6%)

Query: 52  AAVNVSRFEGVTMAPPDPILGVSEAFKA----DTDEKKLNLGVGAYRTEELQPYVLDVVK 107
           A  +V+          D I   +   +A    +  E  +N  +GA   EE     L  VK
Sbjct: 3   AMTSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVK 62

Query: 108 KAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA 167
           +    + +  E+  Y PI G+  F     +  FG       E  + ++    GTG +   
Sbjct: 63  EEYLSLSDS-EHVGYAPIAGIPDFLCAAEKECFGNFR---PEGHIRSIATAGGTGGIHHL 118

Query: 168 AALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKT--VGLDFEGMIADIKA 225
                   PG +VL +   WG ++ I +D       Y  +D         F+  + ++ A
Sbjct: 119 IHNYTE--PGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA 176

Query: 226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE------KNHIPFFDVAYQGFASGSL 279
                 ++ +   +NPTG     + W+ I + +++       N I   DVAY  ++    
Sbjct: 177 KQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGE-K 235

Query: 280 DNDASSVRLFATRGMELL--VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA 337
           D   +    F+    E+L  V  S SK   +Y +R+GAM  +    ++A       K  +
Sbjct: 236 DEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTS 295

Query: 338 RPMYSNPP 345
           R  +SN  
Sbjct: 296 RATWSNIC 303

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score =  334 bits (859), Expect = e-113
 Identities = 51/293 (17%), Positives = 101/293 (34%), Gaps = 17/293 (5%)

Query: 61  GVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENK 120
           G  M  P  IL    +  A+      N  +G    ++        +    N  L   E  
Sbjct: 29  GQNMFYPKGIL----SQSAEAKSTTYNATIGMATNKD-GKMFASSLDAMFND-LTPDEIF 82

Query: 121 EYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKV 180
            Y P +G+     +  + +   +  +  +     +   + T  L L   L         +
Sbjct: 83  PYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVN--QDDTI 140

Query: 181 LISSPTWGNHKNIFNDAR-VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH 239
           L+    WGN+K +FN         Y  +D        + ++  +++      I++    +
Sbjct: 141 LLPEHNWGNYKLVFNTRNGANLQTYPIFDKDG-HYTTDSLVEALQSYNKDKVIMILNYPN 199

Query: 240 NPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGFASGSLDND--ASSVRLFATR 292
           NPTG  PT ++   I + I+         I   D AY G     +      +++    + 
Sbjct: 200 NPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSN 259

Query: 293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPP 345
            +  +     +K    +  R+G M    S       +++++K L R   S+ P
Sbjct: 260 AILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGP 312

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 47/320 (14%), Positives = 91/320 (28%), Gaps = 87/320 (27%)

Query: 75  EAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKV 134
           + F  +         +   +TE+ QP            M     ++ Y   +  A +N V
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQP-------SMMTRMYIEQRDRLYNDNQVFAKYN-V 131

Query: 135 TAELLFGADNSVLKEQRVA---TVQGLSGTGSLRLAAAL-----IERYFPGAKVLISSPT 186
           +    +      L E R A    + G+ G+G   +A  +     ++              
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF--------- 182

Query: 187 WGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID 245
                 IF      W   +  + P+TV    + ++  I               H+     
Sbjct: 183 -----KIF------WLNLKNCNSPETVLEMLQKLLYQIDPN------WTSRSDHSSNIKL 225

Query: 246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN--DASSVRLFA--------TRGME 295
                  ++  +++ K +     V         L N  +A +   F         TR  +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLV---------LLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 296 L---LVAQSYSK------NLGLY---AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSN 343
           +   L A + +       ++ L     + +    + C   DL   V +            
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---------- 326

Query: 344 PPPMLLG-IQLSSMNGKQRW 362
             P  L  I  S  +G   W
Sbjct: 327 --PRRLSIIAESIRDGLATW 344

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 14/203 (6%)

Query: 73  VSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFN 132
                + + D K ++LG+G   TE L  Y+ D + KA   +  R     Y   +G  A  
Sbjct: 59  RKAHQEKNPDAKIISLGIGD-TTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALR 117

Query: 133 KVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK- 191
           +  A   +G       E  +    G S     R+             V +  P++  +  
Sbjct: 118 EAVASTFYGHAGRAADE--IFISDG-SKCDIARIQMMFG----SKPTVAVQDPSYPVYVD 170

Query: 192 -NIFNDARVPWSEYRYYDPKTVGLDFE-GMIADIKAAPGGSFILLHGCA-HNPTGIDPTP 248
            ++        +   +   + +  + +     D+  A     I    C+ +NPTG   T 
Sbjct: 171 TSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFF--CSPNNPTGAAATR 228

Query: 249 EQWEKIADVIQEKNHIPFFDVAY 271
            Q  ++ +  ++   I  +D AY
Sbjct: 229 AQLTELVNFARKNGSILVYDAAY 251

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 33/193 (17%), Positives = 59/193 (30%), Gaps = 53/193 (27%)

Query: 142 ADNSVLKEQRVATVQGLS------GTGS---LRLAA-ALIERYFPGAKVLISSPTWGNHK 191
           A +  L+ +    + G          GS   L     A       G ++    P+     
Sbjct: 65  ASSQKLR-EVAGELYGFDPSWIIMANGSDEVLNNLIRAFAA---EGEEIGYVHPS----- 115

Query: 192 NIFNDARVPWSEYRYY------DPKTVGL--DFEGMIADIKAAPGGSFILLHGCA--HNP 241
             +       S Y           +T GL  DF       +      F+        + P
Sbjct: 116 --Y-------SYYGTLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFL-----TTPNAP 161

Query: 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301
            G     E  +++A        +   D  Y  FA      +++++ L       ++V ++
Sbjct: 162 LGPSFPLEYIDELARRCAG---MLVLDETYAEFA------ESNALELVRRHE-NVVVTRT 211

Query: 302 YSKNLGLYAERIG 314
            SK+  L   RIG
Sbjct: 212 LSKSYSLAGMRIG 224

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 13/162 (8%)

Query: 170 LIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
            +       + +I +P +  +      +      +            + ++  +      
Sbjct: 91  TVASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRW-SLREADGWQLTDAILEALTPDLDC 149

Query: 230 SFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL 288
            F+    C  +NPTG+ P     + IAD  +  N     D A+  F      ++   +  
Sbjct: 150 LFL----CTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFI----PHETGFIPA 201

Query: 289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK 330
                  + V +S +K   +   R+G +  V S     AR++
Sbjct: 202 LKDNP-HIWVLRSLTKFYAIPGLRLGYL--VNSDDAAMARMR 240

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 33/224 (14%)

Query: 124 PIEGLAAFNKVTAELL-FGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF--PGAKV 180
            + GL +   + A  L   A+N ++       +QGL  T +L          +     K+
Sbjct: 68  GVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKM 127

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPK--TVGLDFEGMIAD-----IKAAPGGSFIL 233
           +++ P +  H  +           +    +  TV +  +G   D         P    IL
Sbjct: 128 IVTVPGYDRHFLLL----------QTLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGIL 177

Query: 234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF-DVAYQ--GFASGSLDNDASSVRLFA 290
                 NP G   + E+  ++A +         F D AY+             + V L  
Sbjct: 178 FVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLAR 237

Query: 291 TRGMELLVAQ--SYSKNL--GLYAERIGAMNVVCSSSDLAARVK 330
             G         S SK    G     +G +    SS D    + 
Sbjct: 238 DAGYPDRAFVFASTSKITFAGA---GLGFV---ASSEDNIRWLS 275

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 38/165 (23%)

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYY------DPKTV------GLDFEGMIADIKAA 226
           K+LI  P+       +       +EY                     +D+E +I      
Sbjct: 100 KILIIVPS-------Y-------AEYEINAKKHGVSVVFSYLDENMCIDYEDII---SKI 142

Query: 227 PGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS 285
                +++     +NP G     E++  +  + +EK      D A+  F     D  +S 
Sbjct: 143 DDVDSVII--GNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTG---DPSSSF 197

Query: 286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK 330
           V         L + ++ +K   +   R G    + ++ ++AA++K
Sbjct: 198 VGEIKNYS-CLFIIRAMTKFFAMPGIRFGYG--ITNNKEIAAKIK 239

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 36/168 (21%)

Query: 170 LIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY------DPKTVGLDFEGMIADI 223
            I + F G++ LI+ P+       F       +EY         +      + E +    
Sbjct: 82  QIAQAFRGSRSLIAIPS-------F-------AEYEDACRMYEHEVCFYPSN-EDIGEAD 126

Query: 224 KAAPGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND 282
            +     ++    C  +NP G      +  ++ +     +     D +Y  F       +
Sbjct: 127 FSNMDFCWL----CNPNNPDGRLLQRTEILRLLN--DHPDTTFVLDQSYVSFT----TEE 176

Query: 283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK 330
                    R   L++  S+S   G+   RIG    + ++ D   RV 
Sbjct: 177 VIRPADIKGRK-NLVMVYSFSHAYGIPGLRIGY---IVANKDFMKRVA 220

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 33/231 (14%), Positives = 60/231 (25%), Gaps = 44/231 (19%)

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF------ 175
           Y  + G+A   ++ AE L      +  +  VA            ++ +            
Sbjct: 72  YGGLLGIADIRELWAEAL-----GLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPW 126

Query: 176 ---PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--TVGLDFEGMIAD----IKAA 226
                 K L   P +  H  I            ++  +   V +  EG        +   
Sbjct: 127 SAEEKVKWLCPVPGYDRHFTIT----------EHFGFEMINVPMTDEGPDMGVVRELVKD 176

Query: 227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF-DVAYQ--GFASGSLDNDA 283
           P    +       NPTG+  + +   ++A++           D AY      S       
Sbjct: 177 PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTL-SDEFPIVH 235

Query: 284 SSVRLFATRGMELLVAQ--SYSKNL--GLYAERIGAMNVVCSSSDLAARVK 330
           + +      G         S SK    G     +       SS +      
Sbjct: 236 NVIEFAQAAGNPNRFWFMSSTSKITHAGS---GVSFF---ASSKENIEWYA 280

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 160 GTGSLRLAAALIERYF-PGAKVLISSPTWGNHKNI--FNDAR---VPWSEYRYYDPKTVG 213
             GS  +   L++ +  PG   L   P++  H  +          V              
Sbjct: 98  ANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGA-------DFR 150

Query: 214 LDFEGMIADIKA-APGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY 271
           +D +  + +I+A  P   F+       +NPTG   + +  E+I +V      I   D AY
Sbjct: 151 IDMDVALEEIRAKQPDIVFV----TTPNNPTGDVTSLDDVERIINVAPG---IVIVDEAY 203

Query: 272 QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG 314
             F+        S+  L      +L+V+++ SK       R+G
Sbjct: 204 AEFSP-----SPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLG 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	100.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	100.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	100.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	100.0
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	100.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	100.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	100.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	100.0
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	100.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	100.0
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	100.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	100.0
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	100.0
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	100.0
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	100.0
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.98
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.98
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.98
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.98
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.98
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.98
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.97
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.97
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.97
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.97
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.97
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.97
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.97
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.97
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.97
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.95
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.97
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.97
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.96
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.96
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.96
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.96
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.96
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.95
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.94
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.93
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.92
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.91
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.91
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.91
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.9
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.9
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.9
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.9
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.89
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.89
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.89
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.89
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.89
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.88
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.88
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.88
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.88
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.88
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.88
1svv_A	359	Threonine aldolase; structural genomics, structura	99.88
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.87
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.87
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.87
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.87
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.87
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.87
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.87
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.87
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.87
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.86
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.86
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.86
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.86
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.86
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.86
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.86
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.86
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.86
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.86
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.86
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.86
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.86
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.86
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.85
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.85
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.85
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.85
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.85
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.85
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.85
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.84
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.84
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.84
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.84
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.84
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.84
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.84
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.84
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.84
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.84
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.84
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.84
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.83
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.83
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.83
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.83
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.83
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.82
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.82
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.82
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.82
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.82
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.82
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.82
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.82
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.82
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.82
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.82
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.82
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.81
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.81
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.81
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.81
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.81
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.8
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.8
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.8
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.8
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.8
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.8
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.79
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.79
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.79
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.79
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.79
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.78
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.78
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.78
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.78
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.78
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.78
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.78
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.78
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.78
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.78
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.77
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.77
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.77
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.77
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.76
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.75
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.75
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.75
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.74
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.74
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.74
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.73
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.73
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.72
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.7
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.69
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.68
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.68
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.68
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.68
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.67
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.67
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.67
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.65
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.45
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.63
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.62
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.61
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.61
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.6
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.58
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.57
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.55
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.51
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.49
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.49
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.48
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.45
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.06
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	98.99
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	98.99
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	98.87
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	98.8
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	98.73
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	98.5
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.45
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	98.19
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.05

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=100.00  E-value=2.1e-51  Score=398.67  Aligned_cols=300  Identities=44%  Similarity=0.745  Sum_probs=266.4

Q ss_pred             ccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHH
Q 017967           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (363)
Q Consensus        56 ~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai  135 (363)
                      +++|++|+..|+|+|+++.+.++.++++ +|||++|.|+|++|.+++++.|+++...+.+....++|.|..|.++||+++
T Consensus        18 ~~~~~~v~~~p~d~i~~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~ai   96 (420)
T 4h51_A           18 AERWQKIQAQAPDVIFDLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEA   96 (420)
T ss_dssp             HHHHHTCCCCCCCHHHHHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred             hHHHhCCCCCCCChHHHHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHH
Confidence            4578999999999999999999999886 999999999999999999999999998888776667899999999999999


Q ss_pred             HHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh--CCCCEEEEcCCCCcchHHHHhhCCCC-eEEEecccCCCC
Q 017967          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--FPGAKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTV  212 (363)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~--~~gd~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~~~~~~  212 (363)
                      ++++++..   ...+++..++|.|||+|+.+++.++...  .|||+|++++|+|++|..+++..|.+ +..+++++++++
T Consensus        97 a~~~~g~~---~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~  173 (420)
T 4h51_A           97 VKIIYGNT---VELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTV  173 (420)
T ss_dssp             HHHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGT
T ss_pred             HHHhcCCC---ccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccccc
Confidence            99987754   2356788888999999999886655432  49999999999999999999999997 556777777788


Q ss_pred             CCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc
Q 017967          213 GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (363)
Q Consensus       213 ~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  292 (363)
                      ++|++.+.+.+...+++++++++++||||||.+++.++|++|+++|+++++++|+||+|++|.+++.+.+....+.+.+.
T Consensus       174 ~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~  253 (420)
T 4h51_A          174 SLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARR  253 (420)
T ss_dssp             EECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred             CCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhh
Confidence            99999999999887888999999999999999999999999999999999999999999999997644445566667788


Q ss_pred             CCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       293 ~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      .+++++++||||+|+++|+|+||+++++.+.+...++.+++..+.+.++++++.++|.+++.+|++.
T Consensus       254 ~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~  320 (420)
T 4h51_A          254 GIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNN  320 (420)
T ss_dssp             TCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH
T ss_pred             CceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCH
Confidence            8999999999999999999999998888888888889999999999999999999999999888764

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=100.00  E-value=6.4e-50  Score=387.44  Aligned_cols=301  Identities=26%  Similarity=0.497  Sum_probs=255.6

Q ss_pred             cccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHH-ccCCCCCCCCCcchHHHHHHH
Q 017967           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERGENKEYLPIEGLAAFNKVT  135 (363)
Q Consensus        57 s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~~~~~~Y~~~~G~~~lr~ai  135 (363)
                      |+|++++..++++++++...++.+.++++|||++|.|.|.++.+++++.++++.. +. +....++|.+..|.++||+++
T Consensus         3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~ai   81 (405)
T 3k7y_A            3 KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLT   81 (405)
T ss_dssp             CGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHH
T ss_pred             chhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHH
Confidence            5789999999999999999999988889999999998887887888999999987 54 334447899999999999999


Q ss_pred             HHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCC
Q 017967          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (363)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  215 (363)
                      ++++.+.++..++++++.+++|.|+++|++++..++..+.| |+|++++|+|++|...++..|.+++.+|+.+++++++|
T Consensus        82 a~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d  160 (405)
T 3k7y_A           82 QNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDIN  160 (405)
T ss_dssp             HHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEEC
T ss_pred             HHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcC
Confidence            99998887777777776444599999999999665544448 99999999999999999999999999998655679999


Q ss_pred             HHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCe
Q 017967          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (363)
Q Consensus       216 ~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~  295 (363)
                      ++.|++++++.+++.++++.++||||||.+++.+++++|+++|+++++++|+||+|.+|.+++.+.+..+++.+.+..++
T Consensus       161 ~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~  240 (405)
T 3k7y_A          161 YDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIA  240 (405)
T ss_dssp             HHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCC
T ss_pred             HHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCc
Confidence            99999999864443445554556999999999999999999999999999999999999986433344566666666789


Q ss_pred             EEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       296 vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      +|+++||||+|+++|||+||+++++++++.++++.+++....+..+++++.++|.+++.+|++.
T Consensus       241 ~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~  304 (405)
T 3k7y_A          241 FSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQ  304 (405)
T ss_dssp             EEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCH
T ss_pred             EEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCH
Confidence            9999999999999999999996666788888888888888777788899999999998887763

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=100.00  E-value=5e-46  Score=365.03  Aligned_cols=306  Identities=42%  Similarity=0.723  Sum_probs=265.1

Q ss_pred             hcccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHH--ccCCCCCCCCCcchHHH
Q 017967           54 VNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ERGENKEYLPIEGLAAF  131 (363)
Q Consensus        54 ~~~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~~~~~~Y~~~~G~~~l  131 (363)
                      ..||+|++++..++++++++.+.++.++++.+|||++|.|.|..+++++.+.+++++..+.  ......+|.+..|.+++
T Consensus        20 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~l   99 (448)
T 3meb_A           20 GSMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLF   99 (448)
T ss_dssp             --CCTTTTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHH
T ss_pred             chhhHHhcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHH
Confidence            3467899999999999999999999999888999999999888889999999999987776  23344789999999999


Q ss_pred             HHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCCeEEEecc
Q 017967          132 NKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVPWSEYRYY  207 (363)
Q Consensus       132 r~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~  207 (363)
                      |+++++++.+....++++++|+++||.||++|++++..++..+.+||+|++++|+|.++...++    ..|++++.+|++
T Consensus       100 r~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~  179 (448)
T 3meb_A          100 LEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYL  179 (448)
T ss_dssp             HHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCB
T ss_pred             HHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEecc
Confidence            9999999866544344578998888999999999976677778899999999999999999999    999999999986


Q ss_pred             cCC-CCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHH
Q 017967          208 DPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (363)
Q Consensus       208 ~~~-~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~  286 (363)
                      +++ ++++|++.+++++++.+++++++++++||||||.+++.+++++|+++|+++|+++|+||+|++|.+++.+.+..++
T Consensus       180 ~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~  259 (448)
T 3meb_A          180 RKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAV  259 (448)
T ss_dssp             CTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHH
T ss_pred             ccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhH
Confidence            555 6899999999999865556889999999999999999999999999999999999999999999987422234566


Q ss_pred             HHHHhcCCeEEEEEcCccccccccccceEEEEee--------CChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC--------SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       287 ~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~--------~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ..+.+..+++++++||||.||++|+|+||+.+++        ++++.++.+++++....+..+.+++.++|.+++.+|++
T Consensus       260 ~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~  339 (448)
T 3meb_A          260 RMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHD  339 (448)
T ss_dssp             HHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTS
T ss_pred             HHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcC
Confidence            6666778899999999999999999999986667        66666667888888877888889999999999988876


Q ss_pred             c
Q 017967          359 K  359 (363)
Q Consensus       359 ~  359 (363)
                      .
T Consensus       340 ~  340 (448)
T 3meb_A          340 K  340 (448)
T ss_dssp             H
T ss_pred             h
Confidence            4

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=100.00  E-value=5.6e-45  Score=351.67  Aligned_cols=303  Identities=51%  Similarity=0.914  Sum_probs=259.9

Q ss_pred             ccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHH
Q 017967           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (363)
Q Consensus        56 ~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai  135 (363)
                      +|+|+.++..++++++++.+.++.+.++++|+|++|.|.|..+++++.+.+.+++..........+|.+..|.+++|+++
T Consensus         1 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~i   80 (401)
T 7aat_A            1 SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRAS   80 (401)
T ss_dssp             CCSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred             CChhhcCCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHH
Confidence            36889999999999999999999988888999999998778888888899999888776533447899999999999999


Q ss_pred             HHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCC
Q 017967          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL  214 (363)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  214 (363)
                      ++++.+.++..+++++|++++|.||+++++++...+.. +.|||+|++++|+|..+...++..|.+++.+|+++++++++
T Consensus        81 a~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  160 (401)
T 7aat_A           81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL  160 (401)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred             HHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCcc
Confidence            99998888888889999776799999999988554432 36899999999999999999999999999999876667899


Q ss_pred             CHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC
Q 017967          215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (363)
Q Consensus       215 d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  294 (363)
                      |++.+++.+++.+++++++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++.+.+..++..+.+..+
T Consensus       161 d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~  240 (401)
T 7aat_A          161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI  240 (401)
T ss_dssp             CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred             CHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCC
Confidence            99999998876445678999999999999999999999999999999999999999999998642112445555556778


Q ss_pred             eEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       295 ~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++++++||||.||++|+|+||++++..+++..+.+.++++...+..+.+++.++|.+++.+|++
T Consensus       241 ~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  304 (401)
T 7aat_A          241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNT  304 (401)
T ss_dssp             CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHC
T ss_pred             cEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCC
Confidence            9999999999999999999999544466777777888888777777889999999999877654

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=100.00  E-value=3.2e-44  Score=348.99  Aligned_cols=300  Identities=42%  Similarity=0.771  Sum_probs=260.2

Q ss_pred             ccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHH
Q 017967           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (363)
Q Consensus        56 ~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai  135 (363)
                      ||.|.++...++++++++...++.+..+++|||++|.|.+.++.+++++.+.+++.+........+|.+..|.+++|+++
T Consensus        22 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~i  101 (420)
T 4f4e_A           22 MSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASV  101 (420)
T ss_dssp             CCTTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHH
T ss_pred             cCHhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHH
Confidence            56788999999999999999998887789999999988777777778899999998877654447899999999999999


Q ss_pred             HHHHhcCCCCcccCC--cEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCC
Q 017967          136 AELLFGADNSVLKEQ--RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVG  213 (363)
Q Consensus       136 a~~l~~~~~~~~~~~--~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~  213 (363)
                      ++++.+..+..++++  +|++  |+||+++++++..++..+.+||+|++++|+|.++...++..|++++.+|++++++++
T Consensus       102 a~~l~~~~~~~~~~~~~~i~~--t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~  179 (420)
T 4f4e_A          102 QKLLLGDDSPLIAAGRVVTAQ--ALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNG  179 (420)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEE--EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTE
T ss_pred             HHHhcCCCccccccCceEEEE--CCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCc
Confidence            999988766556678  7877  999999999997667778899999999999999999999999999999986556789


Q ss_pred             CCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC
Q 017967          214 LDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (363)
Q Consensus       214 ~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~  293 (363)
                      +|++.+++.+++.+++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++. +.+..++..+.+..
T Consensus       180 ~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~~~  258 (420)
T 4f4e_A          180 VNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESI-EADAAAVRLFAAAN  258 (420)
T ss_dssp             ECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTT
T ss_pred             cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCc-chhhHHHHHHHhcC
Confidence            99999999998655567899999999999999999999999999999999999999999999863 12355666666677


Q ss_pred             CeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          294 MELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       294 ~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +++++++||||.||++|+|+||+++++++++.++++..+++...+..+.+++.++|.+++.+|++
T Consensus       259 ~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  323 (420)
T 4f4e_A          259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLAS  323 (420)
T ss_dssp             CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHC
T ss_pred             CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcC
Confidence            89999999999999999999999655677777777777777766677888999999999877665

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=100.00  E-value=1.3e-43  Score=343.33  Aligned_cols=299  Identities=42%  Similarity=0.759  Sum_probs=240.7

Q ss_pred             ccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHH
Q 017967           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (363)
Q Consensus        56 ~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai  135 (363)
                      .|+|++++..++++++++...++.+..+++|+|++|.|.+..+++.+.+.+.++     ......+|.+..|.++||+++
T Consensus        14 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a-----~~~~~~~y~~~~g~~~lr~~i   88 (409)
T 4eu1_A           14 AQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQA-----TLGTNMDYAPVTGIASFVEEA   88 (409)
T ss_dssp             -------------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTC-----CCCSCCCCCCTTCCHHHHHHH
T ss_pred             hhHhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhc-----CccccccCCCCCCcHHHHHHH
Confidence            467889999999999999999999888899999999987777777777777766     233347899999999999999


Q ss_pred             HHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCC
Q 017967          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL  214 (363)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  214 (363)
                      ++++.+....++++++|...+|.||+++++++..++..+ .+||+|++++|+|..+...++..|++++.+++++++++++
T Consensus        89 a~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (409)
T 4eu1_A           89 QKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGL  168 (409)
T ss_dssp             HHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEE
T ss_pred             HHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcC
Confidence            999877655555578886666999999999876544443 5899999999999999999999999999999865667899


Q ss_pred             CHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC
Q 017967          215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (363)
Q Consensus       215 d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  294 (363)
                      |++.+++.+++.+++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++...+..++..+.+..+
T Consensus       169 d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~  248 (409)
T 4eu1_A          169 NLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVP  248 (409)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSS
T ss_pred             cHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCC
Confidence            99999999986545678888899999999999999999999999999999999999999998641112345555556678


Q ss_pred             eEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       295 ~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ++++++||||.||++|+|+||+.+++++++.+++++++++...+..+.+++.++|.++..+|++.
T Consensus       249 ~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  313 (409)
T 4eu1_A          249 NLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDP  313 (409)
T ss_dssp             CCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCH
T ss_pred             cEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCH
Confidence            99999999999999999999975557778877778888887777778899999999998887753

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=100.00  E-value=6.8e-42  Score=329.28  Aligned_cols=297  Identities=40%  Similarity=0.718  Sum_probs=253.7

Q ss_pred             cCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHH-HHccCCCCCCCCCcchHHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKVTAE  137 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~Y~~~~G~~~lr~aia~  137 (363)
                      |+.++..++++++.+...++.+..+++|+|++|.|.+.++++++++.+.+++.+ ........+|.+..|..++|+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~   81 (397)
T 3fsl_A            2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAP   81 (397)
T ss_dssp             CTTCCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHH
T ss_pred             cccCCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHH
Confidence            567899999999999999999888899999999877777777777999999988 7755344789888999999999999


Q ss_pred             HHhcCCCCcccCC--cEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCC
Q 017967          138 LLFGADNSVLKEQ--RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (363)
Q Consensus       138 ~l~~~~~~~~~~~--~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  215 (363)
                      ++....+..++++  +|++  |+||+++++++..++..+.+||+|+++.|+|..+...++..|.+++.+++.+++++++|
T Consensus        82 ~~~~~~~~~~~~~~~~i~~--t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  159 (397)
T 3fsl_A           82 LLFGADHPVLKQQRVATIQ--TLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVR  159 (397)
T ss_dssp             HHHCTTCHHHHTTCEEEEE--ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEEC
T ss_pred             HHhcCCcccccccceEEEE--cCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCc
Confidence            9987766555788  8877  99999999998766677889999999999999999999999999999998555678999


Q ss_pred             HHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCe
Q 017967          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (363)
Q Consensus       216 ~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~  295 (363)
                      ++.+++.+++.+++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++. +.+..++..+.+..++
T Consensus       160 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~  238 (397)
T 3fsl_A          160 FNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLP  238 (397)
T ss_dssp             HHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCc-ccccHHHHHHHhcCCC
Confidence            999999998654567899999999999999999999999999999999999999999999862 1234566666567789


Q ss_pred             EEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       296 vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +++++||||.+|++|+|+||+++.+++++.++++...++...+..+.+++.++|.+++.+|.+
T Consensus       239 ~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  301 (397)
T 3fsl_A          239 ALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLND  301 (397)
T ss_dssp             EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTS
T ss_pred             EEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcC
Confidence            999999999999999999999444566776666766666665667778899999999877764

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=100.00  E-value=5.4e-41  Score=325.06  Aligned_cols=304  Identities=41%  Similarity=0.752  Sum_probs=248.7

Q ss_pred             ccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHH-HHccCCCCCCCCCcchHHHHHH
Q 017967           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENL-MLERGENKEYLPIEGLAAFNKV  134 (363)
Q Consensus        56 ~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~Y~~~~G~~~lr~a  134 (363)
                      +|.|+++...+++++..+...++....+++|+|+.|.|.|.++++++++.+.+++.+ .......++|.+..|..++|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~   81 (412)
T 1yaa_A            2 ATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSN   81 (412)
T ss_dssp             TTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred             cchhccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHH
Confidence            456788899999999999988887665689999999987777777788999999888 7654344679889999999999


Q ss_pred             HHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCC
Q 017967          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL  214 (363)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  214 (363)
                      +++++.+.++..+++++|++++|.||++|++++..++..+.+||+|+++.|+|..+...++..|++++.+++.+++++++
T Consensus        82 ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~  161 (412)
T 1yaa_A           82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSL  161 (412)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEE
T ss_pred             HHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCcc
Confidence            99999777776677889977779999999999866666678999999999999999999999999999999843446889


Q ss_pred             CHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC
Q 017967          215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (363)
Q Consensus       215 d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  294 (363)
                      |++.+++.+++.+.+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++...+..++..+....+
T Consensus       162 d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  241 (412)
T 1yaa_A          162 DLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLS  241 (412)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCC
Confidence            99999999986433467777799999999999999999999999999999999999999987531001234444444445


Q ss_pred             ---eEEEEEcCccccccccccceEEEEee----CChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          295 ---ELLVAQSYSKNLGLYAERIGAMNVVC----SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       295 ---~vi~~~S~SK~~~l~G~RvG~i~~v~----~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                         ++++++||||.||++|+|+||+++++    .+++..+.+++++....+..+.+++.++|.++..+|+..
T Consensus       242 ~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~  313 (412)
T 1yaa_A          242 TVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETP  313 (412)
T ss_dssp             TTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH
T ss_pred             CCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCH
Confidence               89999999999998899999993226    246545556777776556667788999999998887654

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=100.00  E-value=4.5e-40  Score=316.43  Aligned_cols=298  Identities=44%  Similarity=0.774  Sum_probs=229.3

Q ss_pred             cCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (363)
                      |+.++..++++++.+...+.....+++|||+.|.|.+.++..++++.+.+++.+.+.....++|.+..|..++|++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~   81 (396)
T 2q7w_A            2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQEL   81 (396)
T ss_dssp             CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHH
T ss_pred             ccccccCCCchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHH
Confidence            56778888888888877776655568999999997666665567788988887765432346898899999999999999


Q ss_pred             HhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHH
Q 017967          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (363)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (363)
                      +.+..+..+++++|++++|.||++|++++..++..+.+||+|+++.|+|..+...++..|++++.++.++++++++|++.
T Consensus        82 ~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  161 (396)
T 2q7w_A           82 LFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDA  161 (396)
T ss_dssp             HHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHH
T ss_pred             HhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHH
Confidence            87665544667888655699999999999665655679999999999999999999999999999998544578899999


Q ss_pred             HHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEE
Q 017967          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (363)
Q Consensus       219 l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~  298 (363)
                      +++.+++.+.+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ....++..+....+++++
T Consensus       162 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~i~  240 (396)
T 2q7w_A          162 LINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE-EDAEGLRAFAAMHKELIV  240 (396)
T ss_dssp             HHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH-HHTHHHHHHHHHCSCEEE
T ss_pred             HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcc-chhHHHHHHHhcCCcEEE
Confidence            9999975433477888899999999999999999999999999999999999999987520 012345545445678999


Q ss_pred             EEcCccccccccccceEEEEee--CChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          299 AQSYSKNLGLYAERIGAMNVVC--SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       299 ~~S~SK~~~l~G~RvG~i~~v~--~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ++||||.+|++|+|+||+  ++  ++++.++.+++.+....+..+.+++.++|.++..+|+..
T Consensus       241 ~~s~sK~~~~~G~riG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  301 (396)
T 2q7w_A          241 ASSYSXNFGLYNERVGAC--TLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSND  301 (396)
T ss_dssp             EEECTTTTTCGGGCCEEE--EEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSH
T ss_pred             EEeccccccccccccceE--EEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcCh
Confidence            999999999999999999  54  567666667777766555667778999999998887654

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=100.00  E-value=1.3e-39  Score=315.28  Aligned_cols=301  Identities=46%  Similarity=0.821  Sum_probs=248.2

Q ss_pred             cccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHH-ccCCCCCCCCCcchHHHHHHH
Q 017967           57 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERGENKEYLPIEGLAAFNKVT  135 (363)
Q Consensus        57 s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~~~~~~Y~~~~G~~~lr~ai  135 (363)
                      ++|+++...+++++.++...++....+++|+|+.|.|.+.++++.+++.+.+++.+.. .....++|.+..|..++|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l   83 (412)
T 1ajs_A            4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA   83 (412)
T ss_dssp             CTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred             chhhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence            3577888889999999998887765568999999998666666777889999988876 222346798899999999999


Q ss_pred             HHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC-----CEEEEcCCCCcchHHHHhhCCCC-eEEEecccC
Q 017967          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG-----AKVLISSPTWGNHKNIFNDARVP-WSEYRYYDP  209 (363)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g-----d~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~~~  209 (363)
                      ++++.+.++..+++++|++++|.||++|++++..++..+.+|     |+|+++.|+|..+...++..|++ ++.++++++
T Consensus        84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~  163 (412)
T 1ajs_A           84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT  163 (412)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred             HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC
Confidence            999977767666788987667999999999997666667899     99999999999999999999999 999998544


Q ss_pred             CCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH
Q 017967          210 KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (363)
Q Consensus       210 ~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  289 (363)
                      +++++|++.+++.+.+.+.+++++++++||||||.+++.+++++|+++|+++|+++|+||+|+++.+++.+....++..+
T Consensus       164 ~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~  243 (412)
T 1ajs_A          164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF  243 (412)
T ss_dssp             TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred             CCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHH
Confidence            67889999999999864345678888999999999999999999999999999999999999999875200023345445


Q ss_pred             HhcCCeEEEEEcCccccccccccceEEEEee--CChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVC--SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       290 ~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~--~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ....++++++.||||.||++|+|+||+  ++  ++++.++.+++++.......+.+++.++|.++..+|+..
T Consensus       244 ~~~~~~~i~~~s~sK~~~~~G~riG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  313 (412)
T 1ajs_A          244 VSEGFELFCAQSFSKNFGLYNERVGNL--TVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDP  313 (412)
T ss_dssp             HHTTCCEEEEEECTTTSCCGGGCEEEE--EEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSH
T ss_pred             hccCCcEEEEEecccccCCCCcceEEE--EEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCc
Confidence            445688999999999999889999999  66  357766667777776555667778999999998887654

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=100.00  E-value=6.1e-39  Score=308.54  Aligned_cols=295  Identities=38%  Similarity=0.651  Sum_probs=239.5

Q ss_pred             cCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (363)
                      |+.++..++++++++.+.++.+..+++|||+.|.|.+.++.+++++.+.+++.+.......++|.+..|..++|++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~   81 (394)
T 2ay1_A            2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGEL   81 (394)
T ss_dssp             GGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHH
T ss_pred             CccCccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHH
Confidence            56788889999999988888766668999999998666665567788999887766433346898889999999999999


Q ss_pred             HhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHH
Q 017967          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (363)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (363)
                      +.+.   .+++++|++++|.||++|++++..++..+.+||+|+++.|+|..+...++..|.+++.+++++++++++|++.
T Consensus        82 ~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  158 (394)
T 2ay1_A           82 ILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEG  158 (394)
T ss_dssp             HHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHH
T ss_pred             HhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHH
Confidence            8543   1256788765699999999999665554569999999999999999999999999999998644568899999


Q ss_pred             HHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEE
Q 017967          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (363)
Q Consensus       219 l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~  298 (363)
                      +++.+++.+++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. .+..++..+....+++++
T Consensus       159 l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~i~  237 (394)
T 2ay1_A          159 MKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPEVLI  237 (394)
T ss_dssp             HHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSSEEE
T ss_pred             HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcc-cchHHHHHHhhcCCCEEE
Confidence            9999986433467888899999999999999999999999999999999999999987520 012344444444678999


Q ss_pred             EEcCccccccccccceEEEEee--CChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          299 AQSYSKNLGLYAERIGAMNVVC--SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       299 ~~S~SK~~~l~G~RvG~i~~v~--~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ++||||.+|++|+|+||+  ++  ++++.++.+++.+....+..+.+++.++|.++..+|+..
T Consensus       238 ~~s~sK~~~~~G~riG~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  298 (394)
T 2ay1_A          238 AASCSKNFGIYRERTGCL--LALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTP  298 (394)
T ss_dssp             EEECTTTTTCGGGCEEEE--EEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSH
T ss_pred             EEeccCCCcCcCCccceE--EEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcCh
Confidence            999999999999999999  55  567766667777765555667778999999988877654

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=1.5e-38  Score=309.82  Aligned_cols=285  Identities=16%  Similarity=0.180  Sum_probs=217.5

Q ss_pred             cCCCCCCCCCchhhHHHHHhcCCCC--CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKADTDE--KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~--~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia  136 (363)
                      |+.+...++++|.++...++.++++  ++|+|++|.+ +..+..++++.+.+++.+.+......+|.+..|..++|++++
T Consensus        28 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la  106 (427)
T 3dyd_A           28 PSDMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIA  106 (427)
T ss_dssp             CCC----------------CCCCCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHH
T ss_pred             hhhHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHH
Confidence            4577778888999999888877765  4599999996 444456678899999888775544468999999999999999


Q ss_pred             HHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCH
Q 017967          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (363)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (363)
                      +++.+. +..+++++|++  |.||++|++++..  .++.+||+|+++.|+|.++...++..|++++.++++++.++++|+
T Consensus       107 ~~~~~~-~~~~~~~~v~~--t~g~t~al~~~~~--~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  181 (427)
T 3dyd_A          107 SYYHCP-EAPLEAKDVIL--TSGCSQAIDLCLA--VLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDL  181 (427)
T ss_dssp             HHHCBT-TBCCCGGGEEE--ESSHHHHHHHHHH--HHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECH
T ss_pred             HHHhhc-CCCCChHHEEE--ecCcHHHHHHHHH--HhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCH
Confidence            998766 67778899988  9999999999843  346799999999999999999999999999999987666788999


Q ss_pred             HHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeE
Q 017967          217 EGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (363)
Q Consensus       217 ~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~v  296 (363)
                      +.+++.+++   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.+|.+++.  ...++..+ ....++
T Consensus       182 ~~l~~~l~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~~-~~~~~v  255 (427)
T 3dyd_A          182 KQLEYLIDE---KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLATL-STDVPI  255 (427)
T ss_dssp             HHHHSSCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGGG-CSSCCE
T ss_pred             HHHHHHhcc---CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHHh-CCCCcE
Confidence            999988863   467788899999999999999999999999999999999999999987642  12232222 344678


Q ss_pred             EEEEcCccccccccccceEEEEeeCCh--hHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          297 LVAQSYSKNLGLYAERIGAMNVVCSSS--DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       297 i~~~S~SK~~~l~G~RvG~i~~v~~~~--~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++++||||.|+++|+|+||+  +++++  ...+.+++++...... .++++.++|.++..+|+.
T Consensus       256 i~~~S~sK~~~~~G~riG~~--~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~  316 (427)
T 3dyd_A          256 LSCGGLAKRWLVPGWRLGWI--LIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCR  316 (427)
T ss_dssp             EEEEESTTTSSCGGGCCEEE--EEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHH
T ss_pred             EEEeeccccCCCcCcceEEE--EecCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999  66642  1112256666555433 468999999999888773

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=2.2e-38  Score=304.37  Aligned_cols=270  Identities=18%  Similarity=0.182  Sum_probs=215.3

Q ss_pred             CCCCCchhhHHHHHhcC--CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhc
Q 017967           64 MAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG  141 (363)
Q Consensus        64 ~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~  141 (363)
                      ..+++++..+...++..  ..++.|+|+.|+|.     ..+++.+.+++.+.+.... .+|.+..|..++|+++++++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~~~~   83 (385)
T 1b5p_A           10 AMKPSATVAVNAKALELRRQGVDLVALTAGEPD-----FDTPEHVKEAARRALAQGK-TKYAPPAGIPELREALAEKFRR   83 (385)
T ss_dssp             HCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCS-----SCCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHH
T ss_pred             hcCcchHHHHHHHHHHHHhcCCCEEEecCCCCC-----CCCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHH
Confidence            34556666666554322  22478999999862     1234677777766654433 5798888999999999999988


Q ss_pred             CCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHH
Q 017967          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      .++..+++++|++  |+||+++++++  +..++.+||+|+++.|+|..+...++..|++++.+++++++++.+|++.+++
T Consensus        84 ~~g~~~~~~~i~~--t~g~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  159 (385)
T 1b5p_A           84 ENGLSVTPEETIV--TVGGSQALFNL--FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRR  159 (385)
T ss_dssp             TTCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHT
T ss_pred             HhCCCCChHHEEE--cCChHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHH
Confidence            7887788899988  99999999998  4445789999999999999999999999999999998644567899999998


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      +++   ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ .  ..++..+ +. +++++++|
T Consensus       160 ~l~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~--~~~~~~~-~~-~~~i~~~s  231 (385)
T 1b5p_A          160 AIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-E--HFSPGRV-AP-EHTLTVNG  231 (385)
T ss_dssp             TCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-C--CCCGGGT-CT-TTEEEEEE
T ss_pred             hcC---CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-C--CCCHHHc-CC-CCEEEEEe
Confidence            876   246778889999999999999999999999999999999999999998753 1  1222222 22 78999999


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |||.||++|+|+||+  +++ ++    +++.+.........+++.+.|.++..+|+.
T Consensus       232 ~SK~~~~~G~RiG~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~  281 (385)
T 1b5p_A          232 AAKAFAMTGWRIGYA--CGP-KE----VIKAMASVSRQSTTSPDTIAQWATLEALTN  281 (385)
T ss_dssp             STTTTTCGGGCCEEE--ECC-HH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHC
T ss_pred             chhhcCCcccceEEE--EeC-HH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhC
Confidence            999999999999999  665 66    555565555555668999999998887754

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=100.00  E-value=2e-37  Score=300.49  Aligned_cols=287  Identities=23%  Similarity=0.311  Sum_probs=221.3

Q ss_pred             CCCCCCCCchhhHHHHHhcCCC----CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHH
Q 017967           61 GVTMAPPDPILGVSEAFKADTD----EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTA  136 (363)
Q Consensus        61 ~v~~~~~~~~~~~~~~~~~~~~----~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia  136 (363)
                      ......+++++.+...++....    .++|+|++|.|.+.+++..+++.+.+++.+...... .+|.+..|.++||++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia   90 (418)
T 3rq1_A           12 AKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEH-VGYAPIAGIPDFLCAAE   90 (418)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHH-HSCCCTTCCHHHHHHHH
T ss_pred             cCCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhccccc-CCCCCCCChHHHHHHHH
Confidence            3445567788888776654332    378999999998877778888999888766443222 67999999999999999


Q ss_pred             HHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCH
Q 017967          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDF  216 (363)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~  216 (363)
                      +++.+.+++. .+++|++  |+||++++.++  +..++.+||+|+++.|+|..|...++..|++++.+|++++ ++++|+
T Consensus        91 ~~~~~~~~~~-~~~~i~~--t~g~~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~  164 (418)
T 3rq1_A           91 KECFGNFRPE-GHIRSIA--TAGGTGGIHHL--IHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDE-HNNFNH  164 (418)
T ss_dssp             HHHHGGGCCS-SEEEEEE--ESHHHHHHHHH--HHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCT-TSSBCH
T ss_pred             HHHhcccCcc-ccccEEE--CCchHHHHHHH--HHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCC-CCCcCH
Confidence            9987765432 1338877  99999999988  4455789999999999999999999999999999998543 479999


Q ss_pred             HHHHHHHHcC--CCCcEEEEEcCC-CCCCCCCCCHHHHHHHHHHHH------hcCCeEEEecCCCCCcCCCCCCchhHHH
Q 017967          217 EGMIADIKAA--PGGSFILLHGCA-HNPTGIDPTPEQWEKIADVIQ------EKNHIPFFDVAYQGFASGSLDNDASSVR  287 (363)
Q Consensus       217 ~~l~~~l~~~--~~~~~~~~i~~p-~NPTG~~~s~~~~~~i~~~~~------~~~~~ii~De~y~~~~~~~~~~~~~~~~  287 (363)
                      +.|++.+++.  ++.+.++++++| |||||.+++.+++++|+++|+      ++|+++|+||+|.+|.+++     ....
T Consensus       165 ~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~-----~~~~  239 (418)
T 3rq1_A          165 EAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEK-----DEVR  239 (418)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCH-----HHHH
T ss_pred             HHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCCh-----HHHH
Confidence            9999998741  123457888999 999999999999999999999      8999999999999998652     1122


Q ss_pred             HHHh----cCCe--EEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          288 LFAT----RGME--LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       288 ~~~~----~~~~--vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      .+..    ..++  +++++||||.||++|+|+||+++++++++.++++.+.........+.+++.++|.++..+|++.
T Consensus       240 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  317 (418)
T 3rq1_A          240 AFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADP  317 (418)
T ss_dssp             GGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCH
Confidence            2211    2334  6899999999999999999993332468755555444333333445689999999998887664

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=296.99  Aligned_cols=279  Identities=17%  Similarity=0.169  Sum_probs=216.4

Q ss_pred             cCCCCCCCCCchhhHHHHHhc------CCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKA------DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFN  132 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~------~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr  132 (363)
                      |..+. .+++.+..+.+.+..      ...+++|||+.|.+ +..    .++.+.+++.+.+......+|++..|.++||
T Consensus        28 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~----~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr  101 (447)
T 3b46_A           28 YFTSN-TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFF-SYS----PPQFAIKEAQKALDIPMVNQYSPTRGRPSLI  101 (447)
T ss_dssp             HHHSC-CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSC-SSC----CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHH
T ss_pred             ccccc-cCccHHHHHHHHHHhhccchhccCCCeEEccCCCC-CCC----CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHH
Confidence            34444 555666666655522      13358999999986 222    3567777777665431236798888999999


Q ss_pred             HHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCC--
Q 017967          133 KVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--  210 (363)
Q Consensus       133 ~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~--  210 (363)
                      +++++++...++..+++++|++  |.||+++++++  +..++.+||+|++++|+|..+...++..|.+++.+++++++  
T Consensus       102 ~~ia~~l~~~~g~~~~~~~v~~--t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~  177 (447)
T 3b46_A          102 NSLIKLYSPIYNTELKAENVTV--TTGANEGILSC--LMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKEL  177 (447)
T ss_dssp             HHHHHHHTTTTTSCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGG
T ss_pred             HHHHHHHHHhcCCCCChhhEEE--eCCHHHHHHHH--HHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCcccc
Confidence            9999999877777778889988  99999999998  44457799999999999999999999999999999986432  


Q ss_pred             --------CCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCc
Q 017967          211 --------TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (363)
Q Consensus       211 --------~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~  282 (363)
                              ++++|++.|++.++   ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.   
T Consensus       178 ~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---  251 (447)
T 3b46_A          178 DQRNTRGEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS---  251 (447)
T ss_dssp             GTSCBCSTTSEECHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---
T ss_pred             ccccccccCcccCHHHHHHhhc---cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC---
Confidence                    57899999998886   3567788899999999999999999999999999999999999999987641   


Q ss_pred             hhHHHHH-HhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          283 ASSVRLF-ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       283 ~~~~~~~-~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ..++..+ .+..++++++.||||.||++|+|+||+  ++.+++    +++.+........++++.+.|.++...|+..
T Consensus       252 ~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~--~~~~~~----l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~  323 (447)
T 3b46_A          252 FTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWV--LSLNAE----LLSYAAKAHTRICFASPSPLQEACANSINDA  323 (447)
T ss_dssp             CCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEE--ECSCHH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHH
T ss_pred             CcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEE--EeCCHH----HHHHHHHHHhhccCCCChHHHHHHHHHHhCC
Confidence            1122212 123368999999999999999999999  773477    4555555444445678999999988877654

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=4.1e-35  Score=281.66  Aligned_cols=267  Identities=18%  Similarity=0.161  Sum_probs=205.7

Q ss_pred             CCCCCCCCchhhHHH---HHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHH
Q 017967           61 GVTMAPPDPILGVSE---AFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (363)
Q Consensus        61 ~v~~~~~~~~~~~~~---~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (363)
                      ++....++++..+..   .++.+. +++|+|+.|.+.     ..+++.+.+++.+.+.... .+|.+..|..++|+++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~l~~g~~~-----~~~~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~   79 (391)
T 3h14_A            7 SRSAVDPFIVMDVMEAARRAEEAG-RRIIHMEVGQPG-----TGAPRGAVEALAKSLETDA-LGYTVALGLPALRQRIAR   79 (391)
T ss_dssp             STTCCCCCTTHHHHHHHHHHHHTT-CCCEECCCSSCS-----SCSCHHHHHHHHHHHC-----------CCHHHHHHHHH
T ss_pred             hHhhcCcchHHHHHHHHHHHHhcC-CCeEEccCCCCC-----CCCCHHHHHHHHHHHhcCC-CCCCCCCChHHHHHHHHH
Confidence            444445555555443   444443 489999999852     2236678888877665433 679888899999999999


Q ss_pred             HHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHH
Q 017967          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (363)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (363)
                      ++...++..+++++|++  |+||+++++++  +..++.+||+|+++.|+|..+...++..|++++.++++++.++.+|++
T Consensus        80 ~~~~~~g~~~~~~~v~~--t~g~~~al~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  155 (391)
T 3h14_A           80 LYGEWYGVDLDPGRVVI--TPGSSGGFLLA--FTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPA  155 (391)
T ss_dssp             HHHHHHCCCCCGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHH
T ss_pred             HHHHHhCCCCCHHHEEE--ecChHHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHH
Confidence            99877777778899988  99999999998  444567999999999999999999999999999999865556788999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEE
Q 017967          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (363)
Q Consensus       218 ~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi  297 (363)
                      .+++.      +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..   .+.   ....++++
T Consensus       156 ~l~~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~---~~~---~~~~~~~i  223 (391)
T 3h14_A          156 DFAGL------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKA---VTA---LELTDECY  223 (391)
T ss_dssp             HHTTS------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC---CCG---GGTCSSSE
T ss_pred             HHHhc------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCC---cCh---hhcCCCEE
Confidence            98765      3456777899999999999999999999999999999999999999886421   121   23357899


Q ss_pred             EEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       298 ~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +++||||.+|++|+|+||+  +++ ++    +++.+.........+++.++|.++...|.
T Consensus       224 ~~~s~sK~~g~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  276 (391)
T 3h14_A          224 VINSFSKYFSMTGWRVGWM--VVP-ED----QVRVVERIAQNMFICAPHASQVAALAALD  276 (391)
T ss_dssp             EEEESSSTTCCTTSCCEEE--ECC-GG----GHHHHHHHHHHTTCCCCHHHHHHHHHHTT
T ss_pred             EEEechhccCCccceeEEE--EeC-HH----HHHHHHHHHhhhccCCCHHHHHHHHHHhC
Confidence            9999999999999999999  665 55    45556555556667889999998877665

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=1.3e-35  Score=287.91  Aligned_cols=276  Identities=15%  Similarity=0.094  Sum_probs=219.4

Q ss_pred             cCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCCCCCcchHHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAE  137 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~  137 (363)
                      +.++...+++.+..+......   ++.|+|+.|.+.     ..+++.+.+++.+.+.... ..+|++..|..++|+++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~---~~~i~l~~g~~~-----~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~   78 (422)
T 3fvs_A            7 ARRLDGIDYNPWVEFVKLASE---HDVVNLGQGFPD-----FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILAS   78 (422)
T ss_dssp             CGGGTTCCCCHHHHHHHHHHT---SCCEECCCSSCS-----SCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHH
T ss_pred             HHHhhccCccHHHHHHHHhhc---CCceEeCCCCCC-----CCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHH
Confidence            345666667777777655543   479999999862     2346778888777664422 3689888899999999999


Q ss_pred             HHhcCCCCcccC-CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEeccc--------
Q 017967          138 LLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD--------  208 (363)
Q Consensus       138 ~l~~~~~~~~~~-~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~--------  208 (363)
                      ++...++..+++ ++|++  |+||+++++++  +..++.+||+|+++.|+|..+...++..|.+++.++++.        
T Consensus        79 ~~~~~~g~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~  154 (422)
T 3fvs_A           79 FFGELLGQEIDPLRNVLV--TVGGYGALFTA--FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGEL  154 (422)
T ss_dssp             HHHHHHTCCCCHHHHEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSC
T ss_pred             HHHHhhCCCCCCCCcEEE--ECChHHHHHHH--HHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEeccccccccccc
Confidence            998777777777 69988  99999999988  444467999999999999999999999999999999864        


Q ss_pred             --CCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHH
Q 017967          209 --PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (363)
Q Consensus       209 --~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~  286 (363)
                        ..++.+|++.+++.++   ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++
T Consensus       155 ~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~  229 (422)
T 3fvs_A          155 GSSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHISI  229 (422)
T ss_dssp             CBGGGSBCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCG
T ss_pred             ccccCCCCCHHHHHhhcC---CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCCh
Confidence              1245689999998876   3577888899999999999999999999999999999999999999987642  12233


Q ss_pred             HHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          287 RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       287 ~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ..+....++++++.||||.||++|+|+||+  +++ ++    +++.+.........+++.+.|.++...|+.
T Consensus       230 ~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  294 (422)
T 3fvs_A          230 ASLPGMWERTLTIGSAGKTFSATGWKVGWV--LGP-DH----IMKHLRTVHQNSVFHCPTQSQAAVAESFER  294 (422)
T ss_dssp             GGSTTTGGGEEEEEEHHHHHTCGGGCCEEE--ECC-HH----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             hhcccccCcEEEEecchhccCCccceEEEE--EeC-HH----HHHHHHHHHhhccCCCCcHHHHHHHHHHhh
Confidence            333223468999999999999999999999  665 66    555565555555668899999999887764

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=100.00  E-value=1.3e-34  Score=287.63  Aligned_cols=231  Identities=16%  Similarity=0.101  Sum_probs=189.5

Q ss_pred             CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh-CCCCEEEEcCCCCcchHHHHhh
Q 017967          118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-FPGAKVLISSPTWGNHKNIFND  196 (363)
Q Consensus       118 ~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~-~~gd~Vlv~~P~y~~~~~~~~~  196 (363)
                      ....|.+..|..++|+++++++.+.++..+++++|++  |.|+++++.++  +..++ .+||.|+++.|+|..+...++.
T Consensus       126 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~--~~~l~~~~gd~Vlv~~p~y~~~~~~~~~  201 (500)
T 3tcm_A          126 ATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFL--TDGASPGVHLM--MQLLIRNEKDGILVPIPQYPLYSASIAL  201 (500)
T ss_dssp             CSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEE--ESSSHHHHHHH--HHHHCCSTTEEEEEEESCCTHHHHHHHH
T ss_pred             cCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEE--cCCHHHHHHHH--HHHHcCCCCCEEEEeCCCcHhHHHHHHH
Confidence            4478999999999999999999877777788999988  99999999988  34445 6999999999999999999999


Q ss_pred             CCCCeEEEecccCCCCCCCHHHHHHHHHcC---CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC
Q 017967          197 ARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (363)
Q Consensus       197 ~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~  273 (363)
                      .|.+++.++++++.++++|++.|++++++.   ..++++++++|||||||.+++.+++++|+++|+++|+++|+||+|++
T Consensus       202 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~  281 (500)
T 3tcm_A          202 HGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQE  281 (500)
T ss_dssp             TTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             cCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccc
Confidence            999999999987667899999999999852   11466777889999999999999999999999999999999999999


Q ss_pred             CcCCCCCCchhHHHHHH------hcCCeEEEEEcCcccc-ccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCch
Q 017967          274 FASGSLDNDASSVRLFA------TRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPP  346 (363)
Q Consensus       274 ~~~~~~~~~~~~~~~~~------~~~~~vi~~~S~SK~~-~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~  346 (363)
                      +.+++. ....++..+.      ....++++++||||.| |++|+|+||+++...+++    +++.+.+.. ....+++.
T Consensus       282 ~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~----~~~~l~~~~-~~~~~~~~  355 (500)
T 3tcm_A          282 NIYVDN-KKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAP----VREQIYKIA-SVNLCSNI  355 (500)
T ss_dssp             CBCCTT-CCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTT----HHHHHHHHH-HTTCCCCH
T ss_pred             cccCCC-CCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHH----HHHHHHHHH-hcccCCCH
Confidence            988532 1233443332      1224689999999999 899999999944334577    445554443 35678999


Q ss_pred             HHHHHHhccccc
Q 017967          347 MLLGIQLSSMNG  358 (363)
Q Consensus       347 ~~q~~~~~~l~~  358 (363)
                      ++|.++..+|+.
T Consensus       356 ~~q~~~~~~l~~  367 (500)
T 3tcm_A          356 TGQILASLVMNP  367 (500)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcC
Confidence            999999888764

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.4e-35  Score=290.92  Aligned_cols=287  Identities=17%  Similarity=0.158  Sum_probs=206.3

Q ss_pred             CCCCCCCCchhhHHHHHhcC--CCC-----CcEEeeccccCCCCCCc---------------------cccHHHHHHHHH
Q 017967           61 GVTMAPPDPILGVSEAFKAD--TDE-----KKLNLGVGAYRTEELQP---------------------YVLDVVKKAENL  112 (363)
Q Consensus        61 ~v~~~~~~~~~~~~~~~~~~--~~~-----~~i~l~~g~~~~~~~~~---------------------~~~~~v~~a~~~  112 (363)
                      ++..+-..++....++++++  +..     .+|++.+|.|......+                     ++.+.+ ++..+
T Consensus        34 ~~~y~~rg~~~~~a~~~~~~~~~g~~~~f~~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~-~~~~~  112 (498)
T 3ihj_A           34 AVEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAK-KRARR  112 (498)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHTTCCCSSSSCBCCC----------CCHHHHHHHHHHHCGGGGGCSSSCHHHH-HHHHH
T ss_pred             HhhhhhcCHHHHHHHHHHHHHhccCCCchhhhhhcCCcCcccccCCcchHHHHHHHHhcCccccCcccCCHHHH-HHHHH
Confidence            34444556666666665543  122     78999999873211101                     122222 33333


Q ss_pred             HHcc---CCCCCCCCCcchHHHHHHHHHHHhcCC-CCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCC----EEEEcC
Q 017967          113 MLER---GENKEYLPIEGLAAFNKVTAELLFGAD-NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA----KVLISS  184 (363)
Q Consensus       113 ~~~~---~~~~~Y~~~~G~~~lr~aia~~l~~~~-~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd----~Vlv~~  184 (363)
                      .+..   .....|++..|.+++|+++++++...+ |.++++++|++  |.|+++++.++.  ..++.+||    .|+++.
T Consensus       113 ~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~--t~G~~~ai~~~~--~~l~~~gd~~~d~Vlv~~  188 (498)
T 3ihj_A          113 ILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYL--TTGASDGISTIL--KILVSGGGKSRTGVMIPI  188 (498)
T ss_dssp             HHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEE--ESSHHHHHHHHH--HHHCCCCGGGSEEEEEEE
T ss_pred             HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEE--cCCHHHHHHHHH--HHHcCCCCCCCCEEEEeC
Confidence            3322   123679999999999999999998776 47788999988  999999999884  34466765    999999


Q ss_pred             CCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCC--CcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 017967          185 PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG--GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN  262 (363)
Q Consensus       185 P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~--~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~  262 (363)
                      |+|+.|...++..|++++.++++++.+|++|++.|++.+++.+.  ++++++++|||||||.+++.+++++|+++|+++|
T Consensus       189 p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~  268 (498)
T 3ihj_A          189 PQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEK  268 (498)
T ss_dssp             SCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999997766789999999999985321  3667777899999999999999999999999999


Q ss_pred             CeEEEecCCCCCcCCCCCCchhHHHHHHh-------cCCeEEEEEcCcccc-ccccccceEEEEeeCChhHHHHHHHHHH
Q 017967          263 HIPFFDVAYQGFASGSLDNDASSVRLFAT-------RGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAARVKSQLK  334 (363)
Q Consensus       263 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~-------~~~~vi~~~S~SK~~-~l~G~RvG~i~~v~~~~~~~~~~~~~l~  334 (363)
                      ++||+||+|.++.+++. ....++..+..       ...++++++||||.| |++|+|+||+++++.+++    +++.+.
T Consensus       269 ~~li~De~y~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~----l~~~l~  343 (498)
T 3ihj_A          269 LFLLADEVYQDNVYSPD-CRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPE----IKGQLV  343 (498)
T ss_dssp             CEEEEECTTTTCBCCTT-CCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHH----HHHHHH
T ss_pred             cEEEEEcCccccccCCC-CCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHH----HHHHHH
Confidence            99999999999998742 12334444322       234689999999999 899999999944446677    455555


Q ss_pred             hhhccccCCCchHHHHHHhccccc
Q 017967          335 RLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       335 ~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      .... .+.+++.++|.++..+++.
T Consensus       344 ~~~~-~~~~~~~~~q~a~~~~l~~  366 (498)
T 3ihj_A          344 KLLS-VRLCPPVSGQAAMDIVVNP  366 (498)
T ss_dssp             HHHH-HSCCCCHHHHHHHHHHTCC
T ss_pred             HHHh-ccCCCCHHHHHHHHHHhcC
Confidence            4433 5678899999999888764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=2.3e-35  Score=283.04  Aligned_cols=273  Identities=17%  Similarity=0.192  Sum_probs=215.3

Q ss_pred             CCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCC
Q 017967           65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (363)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (363)
                      .+++++..+...++..  ++.|+|+.|.+.     ...++.+.+++.+.+.... .+|++..|..++|+++++++...++
T Consensus        10 ~~~~~~~~~~~~~~~~--~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~~~~~~g   81 (389)
T 1gd9_A           10 VSASEIRKLFDIAAGM--KDVISLGIGEPD-----FDTPQHIKEYAKEALDKGL-THYGPNIGLLELREAIAEKLKKQNG   81 (389)
T ss_dssp             SCCCHHHHHHHHHHTC--SSCEECCCCSCS-----SCCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CChhHHHHHHHHHhhh--cCeEecCCCCCC-----CCCCHHHHHHHHHHHhCCC-CCCCCCCCcHHHHHHHHHHHHHHhC
Confidence            4566777777776654  479999999852     1135677777776664433 5798888999999999999876556


Q ss_pred             CcccCCc-EEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHH
Q 017967          145 SVLKEQR-VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       145 ~~~~~~~-i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      ..+++++ |++  |.||+++++++  +..++.+||+|++++|+|..+...++..|++++.+|+++++++.+|++.+++.+
T Consensus        82 ~~~~~~~~v~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l  157 (389)
T 1gd9_A           82 IEADPKTEIMV--LLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV  157 (389)
T ss_dssp             CCCCTTTSEEE--ESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHC
T ss_pred             CCCCCCCeEEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhc
Confidence            5566788 988  99999999988  333467999999999999999999999999999999854345778999999988


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCc
Q 017967          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  303 (363)
                      ++   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+....++++++.|||
T Consensus       158 ~~---~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~s  232 (389)
T 1gd9_A          158 TD---KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITVNGFS  232 (389)
T ss_dssp             CT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEEST
T ss_pred             Cc---CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CCCCHhhccCCCCCEEEEecCh
Confidence            63   466778899999999999999999999999999999999999999987532  1122222211235799999999


Q ss_pred             cccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccccc
Q 017967          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQR  361 (363)
Q Consensus       304 K~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~  361 (363)
                      |.+|++|+|+||+  +++ ++    +++.+.........+++.++|.++...|+..+.
T Consensus       233 K~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~  283 (389)
T 1gd9_A          233 KTFAMTGWRLGFV--AAP-SW----IIERMVKFQMYNATCPVTFIQYAAAKALKDERS  283 (389)
T ss_dssp             TTTTCGGGCCEEE--ECC-HH----HHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH
T ss_pred             hhcCCcccceEEE--EEC-HH----HHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc
Confidence            9999999999999  665 66    566666555555678899999999888876443

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=3.6e-35  Score=287.89  Aligned_cols=269  Identities=13%  Similarity=0.161  Sum_probs=208.6

Q ss_pred             CCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcC
Q 017967           65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGA  142 (363)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~  142 (363)
                      ..++++..+.....   .+++|+|+.|.|. .  ..++.+.+.+++.+.+...  ...+|++..|.++||+++++++...
T Consensus        61 ~~~s~~~~~~~~~~---~~~~i~l~~g~p~-~--~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~  134 (448)
T 3aow_A           61 MRASEVRELLKLVE---TSDIISLAGGLPN-P--KTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKR  134 (448)
T ss_dssp             CCCCHHHHHHHHHH---TSSSEECCCCCCC-G--GGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhcc---CCCcEeCCCCCCC-c--hhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHh
Confidence            34555655554433   3579999999873 2  2345677777776665321  1257988899999999999998655


Q ss_pred             CCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHH
Q 017967          143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (363)
Q Consensus       143 ~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  222 (363)
                      ++.+ ++++|++  |.|++++++++..  .++.+||.|+++.|+|..+...++..|++++.+|+++   .++|++.|++.
T Consensus       135 ~g~~-~~~~v~~--t~G~~~al~~~~~--~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~---~g~d~~~L~~~  206 (448)
T 3aow_A          135 YGIS-QDNDIMI--TSGSQQALDLIGR--VFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDD---EGMKVEILEEK  206 (448)
T ss_dssp             HCCC-TTSEEEE--ESSHHHHHHHHHH--HHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET---TEECHHHHHHH
T ss_pred             cCcC-ChhhEEE--eCcHHHHHHHHHH--HHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCC---CCCCHHHHHHH
Confidence            5655 6789988  9999999999843  3467999999999999999999999999999999853   25999999999


Q ss_pred             HH----cCCCCcEE-EEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEE
Q 017967          223 IK----AAPGGSFI-LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (363)
Q Consensus       223 l~----~~~~~~~~-~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi  297 (363)
                      ++    +.+ ++++ +++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ...++..+ +..++++
T Consensus       207 l~~~~~~~~-~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~--~~~~~~~~-~~~~~vi  282 (448)
T 3aow_A          207 LKELKSQGK-KVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN--PEKKIKAL-DNEGRVI  282 (448)
T ss_dssp             HHHHHHTTC-CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC--CCCCTGGG-CTTSCEE
T ss_pred             HhhhhccCC-CCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHhc-CCCCCEE
Confidence            87    322 3445 57899999999999999999999999999999999999999987542  12222222 3446899


Q ss_pred             EEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       298 ~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ++.||||.++ +|+|+||+  +++ ++    +++.+.........+++.++|.++..+|+..
T Consensus       283 ~~~S~SK~~~-~GlriG~v--~~~-~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~  336 (448)
T 3aow_A          283 YLGTFSKILA-PGFRIGWM--VGD-PG----IIRKMEIAKQSTDLCTNVFGQVVAWRYVDGG  336 (448)
T ss_dssp             EEEESTTTTC-GGGCCEEE--EEC-HH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHTT
T ss_pred             EEccchhhcc-ccccEEEE--EeC-HH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Confidence            9999999999 99999999  776 66    4555554444445678999999998888653

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=100.00  E-value=2e-35  Score=285.33  Aligned_cols=272  Identities=14%  Similarity=0.086  Sum_probs=213.7

Q ss_pred             CCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcC
Q 017967           63 TMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA  142 (363)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~  142 (363)
                      ...+++.+..+...   ...+++|+|+.|.+.     ..+++.+.+++.+.+......+|++..|..++|+++++++...
T Consensus         6 ~~~~~~~~~~~~~~---~~~~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~   77 (410)
T 3e2y_A            6 EGLDSNVWVEFTKL---AADPSVVNLGQGFPD-----ISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKI   77 (410)
T ss_dssp             TTCCCCHHHHTTTT---TTSTTSEECSSCCCC-----SCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHH---hcCCCeEEecCCCCC-----CCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHH
Confidence            33444444443322   233589999999862     2246788888877765433368988889999999999999876


Q ss_pred             CCCcccC-CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEeccc---------CCCC
Q 017967          143 DNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD---------PKTV  212 (363)
Q Consensus       143 ~~~~~~~-~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~---------~~~~  212 (363)
                      ++..+++ ++|++  |+|+++++.++  +..++.+||+|+++.|+|..+...++..|.+++.++++.         +.++
T Consensus        78 ~~~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~  153 (410)
T 3e2y_A           78 YQRQIDPNEEILV--AVGAYGSLFNS--IQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDW  153 (410)
T ss_dssp             HTSCCCTTTSEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGE
T ss_pred             hCCCCCCCCCEEE--eCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCC
Confidence            7777777 79988  99999999988  444467999999999999999999999999999999852         2356


Q ss_pred             CCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc
Q 017967          213 GLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (363)
Q Consensus       213 ~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  292 (363)
                      .+|++.++++++   ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+...
T Consensus       154 ~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~  228 (410)
T 3e2y_A          154 TFDPRELESKFS---SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPGM  228 (410)
T ss_dssp             ECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTC
T ss_pred             cCCHHHHHhhcC---CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCCc
Confidence            689999998875   3567788899999999999999999999999999999999999999987642  12233333233


Q ss_pred             CCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       293 ~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      .++++++.||||.||++|+|+||+  +++ ++    +++.+........++++.+.|.++...|+.
T Consensus       229 ~~~~i~~~S~sK~~g~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  287 (410)
T 3e2y_A          229 WERTITIGSAGKTFSVTGWKLGWS--IGP-AH----LIKHLQTVQQNSFYTCATPLQAALAEAFWI  287 (410)
T ss_dssp             GGGEEEEEEHHHHSSCGGGCCEEE--ECC-HH----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             cCeEEEEecchhhcCCCCceEEEE--EEC-HH----HHHHHHHHHHhhccCCChHHHHHHHHHHHh
Confidence            468999999999999999999999  665 66    556566555556678899999999887763

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=4.6e-35  Score=281.50  Aligned_cols=269  Identities=13%  Similarity=0.118  Sum_probs=210.9

Q ss_pred             CCCchhhHHHHHhc---CCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcC
Q 017967           66 PPDPILGVSEAFKA---DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA  142 (363)
Q Consensus        66 ~~~~~~~~~~~~~~---~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~  142 (363)
                      ++.++..+......   +..+++|+|+.|.+.     ...++.+.+++.+....  ..+|++..|..++|+++++++...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~~   82 (396)
T 3jtx_A           10 KPYPFARLHEAMQGISAPEGMEAVPLHIGEPK-----HPTPKVITDALTASLHE--LEKYPLTAGLPELRQACANWLKRR   82 (396)
T ss_dssp             CSCHHHHHHHHTTTCCCCTTCCCEECSCCSCC-----SCCCHHHHHHHHHTGGG--GGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHhhhhccCCCeEEeCCcCCC-----CCCCHHHHHHHHHHhhh--ccCCCCCCCcHHHHHHHHHHHHHh
Confidence            34455555443332   334589999999852     12457788887776542  267988899999999999999877


Q ss_pred             CCCc-ccCC-cEEEEeccchhHHHHHHHHHHHHhCCC-----CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCC
Q 017967          143 DNSV-LKEQ-RVATVQGLSGTGSLRLAAALIERYFPG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLD  215 (363)
Q Consensus       143 ~~~~-~~~~-~i~~~~t~ggt~al~l~~~l~~~~~~g-----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d  215 (363)
                      ++.. ++++ +|++  |+|++++++++  +..++.+|     |+|+++.|+|..+...++..|++++.+++ +++++.+|
T Consensus        83 ~g~~~~~~~~~i~~--t~g~~~al~~~--~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~~~d  157 (396)
T 3jtx_A           83 YDGLTVDADNEILP--VLGSREALFSF--VQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSFNPD  157 (396)
T ss_dssp             TTTCCCCTTTSEEE--ESSHHHHHHHH--HHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTCCCC
T ss_pred             cCCCCCCCCCeEEE--cCCcHHHHHHH--HHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCCccC
Confidence            7766 6788 9988  99999999998  44446786     79999999999999999999999999998 45567789


Q ss_pred             HHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH-H---Hh
Q 017967          216 FEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL-F---AT  291 (363)
Q Consensus       216 ~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~---~~  291 (363)
                      ++.+++++++   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...+... +   ..
T Consensus       158 ~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~  232 (396)
T 3jtx_A          158 WRSISEEVWK---RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN--KPLGCLQAAAQLGR  232 (396)
T ss_dssp             GGGSCHHHHH---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC--CCCCHHHHHHHTTC
T ss_pred             HHHHHHhhcc---CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCchHHhhhhhccc
Confidence            9999999984   567788889999999999999999999999999999999999999988642  1112211 1   11


Q ss_pred             cCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       292 ~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ..++++++.||||.|+++|+|+||+  +++ ++    +++.+.........+++.++|.++...|+.
T Consensus       233 ~~~~~i~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  292 (396)
T 3jtx_A          233 SRQKLLMFTSLSKRSNVPGLRSGFV--AGD-AE----LLKNFLLYRTYHGSAMSIPVQRASIAAWDD  292 (396)
T ss_dssp             CCTTEEEEEESTTTSSCGGGCCEEE--EEC-HH----HHHHHHHHHHHHTCCCCHHHHHHHHHHHHC
T ss_pred             ccCcEEEEeccccccCCcccceEEE--EeC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHhCC
Confidence            3578999999999999999999999  664 66    555555554455568899999999887754

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.8e-35  Score=285.05  Aligned_cols=279  Identities=15%  Similarity=0.149  Sum_probs=201.2

Q ss_pred             CCCCCCCchhhHHH---HHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHH
Q 017967           62 VTMAPPDPILGVSE---AFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (363)
Q Consensus        62 v~~~~~~~~~~~~~---~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (363)
                      +...++..+..+..   .++.++ .++|+|+.|.+. .    ..++.+.+++.+.+......+|++..|..++|++++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~g-~~~idl~~g~~~-~----~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~   87 (412)
T 2x5d_A           14 IDRLPPYVFNITAELKMAARRRG-EDIIDLSMGNPD-G----PTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHW   87 (412)
T ss_dssp             -------CHHHHHHHHHHHHHTT-CCCEECSSCCCC-S----CCCHHHHHHHHHTC---------CTTCCHHHHHHHHHH
T ss_pred             HhhcCchHHHHHHHHHHHHhhcC-CCEEecCCCCCC-C----CCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHH
Confidence            33334444544433   333443 378999999852 1    14577888777665432235798888999999999999


Q ss_pred             HhcCCCCcccC-CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHH
Q 017967          139 LFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (363)
Q Consensus       139 l~~~~~~~~~~-~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (363)
                      +...++..+++ ++|++  |+||+++++++.  ..++.+||+|+++.|+|..+...++..|++++.++++++.++.+|++
T Consensus        88 ~~~~~g~~~~~~~~v~~--t~g~~~a~~~~~--~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~  163 (412)
T 2x5d_A           88 YRDRYDVQIDPESEAIV--TIGSKEGLAHLM--LATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELE  163 (412)
T ss_dssp             HHHHHCCCCCTTTSEEE--ESCHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHH
T ss_pred             HHHHhCCCCCCCcCEEE--cCChHHHHHHHH--HHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHH
Confidence            86655655667 69988  999999999984  34467999999999999999999999999999999854324457889


Q ss_pred             HHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEE
Q 017967          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (363)
Q Consensus       218 ~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi  297 (363)
                      .++++++.   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+....++++
T Consensus       164 ~l~~~i~~---~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i  238 (412)
T 2x5d_A          164 RAIRESIP---KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGW--KAPSIMQVPGAKDIAV  238 (412)
T ss_dssp             HHHHTEES---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTGGGTEE
T ss_pred             HHHHhccc---CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCChhhccCccCcEE
Confidence            99988762   345666799999999999999999999999999999999999999987532  1222222211246799


Q ss_pred             EEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       298 ~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ++.||||.+|++|+|+||+  +++ ++    +++.+.........+++.++|.++..+|+..++|
T Consensus       239 ~~~s~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  296 (412)
T 2x5d_A          239 EFFTLSKSYNMAGWRIGFM--VGN-PE----LVSALARIKSYHDYGTFTPLQVAAIAALEGDQQC  296 (412)
T ss_dssp             EEEECC-CCSCTTSCCEEE--EEC-HH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHH
T ss_pred             EEecCccccCCcccceEEE--EcC-HH----HHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHH
Confidence            9999999999999999999  664 66    4555554444445688999999998888765444

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=5.7e-35  Score=280.24  Aligned_cols=273  Identities=17%  Similarity=0.169  Sum_probs=210.4

Q ss_pred             CCCchhhHHHHH---hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcC
Q 017967           66 PPDPILGVSEAF---KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA  142 (363)
Q Consensus        66 ~~~~~~~~~~~~---~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~  142 (363)
                      +++++..+...+   ..+ .+++|+|+.|.+. .    ..++.+.+++.+.+.... .+|++..|..++|+++++++...
T Consensus        11 ~~~~~~~~~~~~~~~~~~-g~~~i~l~~~~~~-~----~~~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~~~~~   83 (388)
T 1j32_A           11 SPSMTLIIDAKAKAMKAE-GIDVCSFSAGEPD-F----NTPKHIVEAAKAALEQGK-TRYGPAAGEPRLREAIAQKLQRD   83 (388)
T ss_dssp             CCCSSTTTHHHHHHHHTT-TCCCEECCCSSCS-S----CCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhc-CCCEEECCCCCCC-C----CCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHh
Confidence            344454444433   333 2479999999862 1    135677777776664433 67988889999999999999766


Q ss_pred             CCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHH
Q 017967          143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (363)
Q Consensus       143 ~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  222 (363)
                      ++..+++++|++  |.||++++.++.  ..++.+||+|++++|+|..+...++..|++++.++.++++++.+|++.+++.
T Consensus        84 ~g~~~~~~~v~~--~~g~~~a~~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  159 (388)
T 1j32_A           84 NGLCYGADNILV--TNGGKQSIFNLM--LAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQA  159 (388)
T ss_dssp             HCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHH
T ss_pred             cCCCCChhhEEE--cCCHHHHHHHHH--HHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHh
Confidence            666667889988  999999999984  4446799999999999999999999999999999985434678999999998


Q ss_pred             HHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh-cCCeEEEEEc
Q 017967          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQS  301 (363)
Q Consensus       223 l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~S  301 (363)
                      +++   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..  ..++..+.. ..++++++.|
T Consensus       160 l~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s  234 (388)
T 1j32_A          160 ITP---KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQ--HLSIGAASPEAYERSVVCSG  234 (388)
T ss_dssp             CCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHHTEEEEEE
T ss_pred             cCc---CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCC--CCCHHHccccccCCEEEEee
Confidence            863   4677788999999999999999999999999999999999999999875421  112211111 1247899999


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQR  361 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~  361 (363)
                      |||.+|++|+|+||+  +++ ++    +++.+.........+++.++|.++...|+..++
T Consensus       235 ~sK~~~~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~  287 (388)
T 1j32_A          235 FAKTYAMTGWRVGFL--AGP-VP----LVKAATKIQGHSTSNVCTFAQYGAIAAYENSQD  287 (388)
T ss_dssp             STTTTTCTTTCCEEE--ECC-HH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSH
T ss_pred             chhccCCcccceEEE--EeC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcH
Confidence            999999999999999  665 66    555565555555668889999988777764443

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=8.2e-35  Score=280.52  Aligned_cols=259  Identities=16%  Similarity=0.177  Sum_probs=206.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC-CcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-QRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-~~i~~~~t~ggt~  162 (363)
                      ..|||+.|.|.   + ..+++.+.+++.+.+.......|.+..|..++++++++++...++..+++ ++|++  |+||++
T Consensus        40 ~~id~~~g~~~---~-~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~--~~g~~~  113 (407)
T 3nra_A           40 RPVDFSHGDVD---A-HEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLII--TPGTQG  113 (407)
T ss_dssp             CCEETTSCCTT---T-SCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESHHHH
T ss_pred             ceeeecCcCCC---C-CCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCcHH
Confidence            47999999863   1 22456777777666543222468888999999999999987766666656 79988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEeccc----CCCCCCCHHHHHHHHHcCCCCcEEEEEcCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD----PKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~----~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p  238 (363)
                      ++.++  +..++.+||+|+++.|+|..+...++..|++++.++++.    ++++++|++.+++.+++   +++++++++|
T Consensus       114 a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~p  188 (407)
T 3nra_A          114 ALFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA---GARVFLFSNP  188 (407)
T ss_dssp             HHHHH--HHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT---TCCEEEEESS
T ss_pred             HHHHH--HHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh---CCcEEEEcCC
Confidence            99988  344467999999999999999999999999999999832    35688999999999984   4557777999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH-hcCCeEEEEEcCccccccccccceEEE
Q 017967          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       239 ~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                      |||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+. ...++++++.||||.+|++|+|+||+ 
T Consensus       189 ~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~-  265 (407)
T 3nra_A          189 NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA--SYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVA-  265 (407)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC--CCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEE-
T ss_pred             CCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEE-
Confidence            99999999999999999999999999999999999987642  122332221 23568999999999999999999999 


Q ss_pred             EeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          318 VVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       318 ~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       +++ ++    +++.+.........+++.++|.++..+|+..++|
T Consensus       266 -~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  304 (407)
T 3nra_A          266 -FGS-RA----IIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGW  304 (407)
T ss_dssp             -EEC-HH----HHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTH
T ss_pred             -EcC-HH----HHHHHHHHHhhhccCCChHHHHHHHHHHhccchH
Confidence             664 66    5566665555666688899999998888765544

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=4e-34  Score=274.29  Aligned_cols=257  Identities=11%  Similarity=0.116  Sum_probs=202.5

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      ++.|+|+.|.+. .    ..++.+.+++.+...... .+|.+..|..++|+++++++...++..++++ +|++  |.|++
T Consensus        30 ~~~i~l~~~~~~-~----~~~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g~~  101 (386)
T 1u08_A           30 HQAINLSQGFPD-F----DGPRYLQERLAHHVAQGA-NQYAPMTGVQALREAIAQKTERLYGYQPDADSDITV--TAGAT  101 (386)
T ss_dssp             TTCEECCCSSCS-S----CCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEE--ESSHH
T ss_pred             CCeEEecCCCCC-C----CCCHHHHHHHHHHHHhhc-cCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--cCChH
Confidence            378999999862 1    135677888777664433 6798888999999999999866555556778 9988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++.++.  ..++.+||+|+++.|+|..+...++..|++++.+++++ +++++|++.+++.++   ++++++++++||||
T Consensus       102 ~a~~~~~--~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~---~~~~~v~l~~p~np  175 (386)
T 1u08_A          102 EALYAAI--TALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP-PHFRVDWQEFAALLS---ERTRLVILNTPHNP  175 (386)
T ss_dssp             HHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCT-TTCCCCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred             HHHHHHH--HHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCc-ccCcCCHHHHHHhhc---ccCEEEEEeCCCCC
Confidence            9999884  33467999999999999999999999999999999853 257899999999885   35677788999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.+++..  ..++..+....++++++.||||.+|++|+|+||+  +++
T Consensus       176 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~~~  251 (386)
T 1u08_A          176 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQG--HASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYC--VAP  251 (386)
T ss_dssp             TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSC--CCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEE--ECC
T ss_pred             CCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCC--CcChhcccCccCcEEEEecchhhcCCcccceEEE--EcC
Confidence            999999999999999999999999999999999875421  1122212112468999999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                       ++    +++.+.........+++.+.|.++..+|+..++|
T Consensus       252 -~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  287 (386)
T 1u08_A          252 -AP----ISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEH  287 (386)
T ss_dssp             -HH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHH
T ss_pred             -HH----HHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHH
Confidence             66    4555554443344577888999888877654433

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=100.00  E-value=2.5e-34  Score=279.76  Aligned_cols=271  Identities=14%  Similarity=0.146  Sum_probs=204.8

Q ss_pred             CCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccc-c-HHH---------HHHHHHHHccCCCCCCCCCcchHH
Q 017967           62 VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYV-L-DVV---------KKAENLMLERGENKEYLPIEGLAA  130 (363)
Q Consensus        62 v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~-~-~~v---------~~a~~~~~~~~~~~~Y~~~~G~~~  130 (363)
                      +....++++..+........ ++.|+|+.|.|. ....|.. . ..+         .+....      ..+|.+..|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~-~~~i~l~~G~p~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~   82 (425)
T 2r2n_A           11 SAARNPSPIRTMTDILSRGP-KSMISLAGGLPN-PNMFPFKTAVITVENGKTIQFGEEMMKR------ALQYSPSAGIPE   82 (425)
T ss_dssp             HHTCCCCSGGGHHHHHHHSC-TTCEECCCCCCC-GGGCSEEEEEEEETTSCCEEECHHHHHH------HTSCCCTTCCHH
T ss_pred             HhcCCCchHHHHHHHhhcCC-CCeEEcCCcCCC-chhCCHHHHHHHHhhcccccccccchhh------hcCCCCCCCCHH
Confidence            34455667777776665432 478999999973 2222210 0 000         111111      157999999999


Q ss_pred             HHHHHHHHHhcCCCCccc-------CCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEE
Q 017967          131 FNKVTAELLFGADNSVLK-------EQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (363)
Q Consensus       131 lr~aia~~l~~~~~~~~~-------~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (363)
                      ||+++++++.+.++...+       +++|++  |.|+++++.++.  ..++.+||+|++++|+|..+...++..|++++.
T Consensus        83 lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~--t~G~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~  158 (425)
T 2r2n_A           83 LLSWLKQLQIKLHNPPTIHYPPSQGQMDLCV--TSGSQQGLCKVF--EMIINPGDNVLLDEPAYSGTLQSLHPLGCNIIN  158 (425)
T ss_dssp             HHHHHHHHHHHHHCCTTTTSCGGGTCEEEEE--ESSHHHHHHHHH--HHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEE
T ss_pred             HHHHHHHHHHHhcCCCCccccccCCcCcEEE--eCcHHHHHHHHH--HHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEE
Confidence            999999998766666553       368988  999999999984  444679999999999999999999999999999


Q ss_pred             EecccCCCCCCCHHHHHHHHHcC----------CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC
Q 017967          204 YRYYDPKTVGLDFEGMIADIKAA----------PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (363)
Q Consensus       204 v~~~~~~~~~~d~~~l~~~l~~~----------~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~  273 (363)
                      +++++   .++|++.|++.++..          ++...++++++||||||.+++.+++++|+++|+++|++||+||+|.+
T Consensus       159 v~~~~---~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~  235 (425)
T 2r2n_A          159 VASDE---SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYF  235 (425)
T ss_dssp             ECEET---TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGG
T ss_pred             eCcCC---CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCccc
Confidence            99853   369999999998732          12334445689999999999999999999999999999999999999


Q ss_pred             CcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHh
Q 017967          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQL  353 (363)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~  353 (363)
                      +.+++.  ...++..+ +..+++++++||||.|+ +|+|+||+  +++ ++    +++.+.........+++.++|.++.
T Consensus       236 ~~~~g~--~~~~~~~~-~~~~~~i~~~s~SK~~~-~GlRiG~~--~~~-~~----l~~~l~~~~~~~~~~~~~~~q~a~~  304 (425)
T 2r2n_A          236 LQFNKF--RVPTFLSM-DVDGRVIRADSFSKIIS-SGLRIGFL--TGP-KP----LIERVILHIQVSTLHPSTFNQLMIS  304 (425)
T ss_dssp             GBSSSS--CCCCTGGG-CTTSCEEEEEESTTTTC-STTCCEEE--EEE-HH----HHHHHHHHHHTTTCSSCHHHHHHHH
T ss_pred             ccCCCC--CCCCcccc-CCCCCEEEEccchhhcc-CccceEEE--ecC-HH----HHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            887542  12222222 34568999999999999 99999999  776 55    5566665555556789999999998


Q ss_pred             ccccc
Q 017967          354 SSMNG  358 (363)
Q Consensus       354 ~~l~~  358 (363)
                      .+|+.
T Consensus       305 ~~l~~  309 (425)
T 2r2n_A          305 QLLHE  309 (425)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88765

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=4.7e-34  Score=274.79  Aligned_cols=256  Identities=16%  Similarity=0.222  Sum_probs=204.4

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC---CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccc
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (363)
                      +++|+|+.|.+.     ..+++.+.+++.+.+....   ..+|++..|..++|+++++++...++..+++++|++  |+|
T Consensus        35 ~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~--~~g  107 (398)
T 3ele_A           35 ENVYDFSIGNPS-----IPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM--TMG  107 (398)
T ss_dssp             GGCEECCSCCCC-----SCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESS
T ss_pred             CCeEEeecCCCC-----CCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEE--ccC
Confidence            478999999652     1245677777776654321   267988999999999999999877777778899988  999


Q ss_pred             hhHHHHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCC
Q 017967          160 GTGSLRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (363)
Q Consensus       160 gt~al~l~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p  238 (363)
                      +++++.++  +..++.+| |+|+++.|+|..+...++..|++++.+|+++ +++++|++.++++++   ++++++++++|
T Consensus       108 ~~~al~~~--~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~---~~~~~v~~~~p  181 (398)
T 3ele_A          108 AAASLSIC--FRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT-EHFQIDFDALEERIN---AHTRGVIINSP  181 (398)
T ss_dssp             HHHHHHHH--HHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCT-TTSSCCHHHHHHTCC---TTEEEEEECSS
T ss_pred             HHHHHHHH--HHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCC-cCCcCCHHHHHHHhC---cCCCEEEEcCC
Confidence            99999998  44447799 9999999999999999999999999999853 468999999999886   35778888999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHh------cCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccccc
Q 017967          239 HNPTGIDPTPEQWEKIADVIQE------KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (363)
Q Consensus       239 ~NPTG~~~s~~~~~~i~~~~~~------~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~R  312 (363)
                      |||||.+++.+++++|+++|++      +|+++|+||+|.++.+++..  ...   ..+..+++++++||||.+|++|+|
T Consensus       182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~--~~~---~~~~~~~~i~~~s~sK~~~~~G~r  256 (398)
T 3ele_A          182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIK--VPF---VTKYYDNTLVCYSYSKSLSLPGER  256 (398)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCC--CCC---GGGTCSSEEEEEESTTTSSCTTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCC--cCC---hHhhcCCeEEEEehhhcCCCccce
Confidence            9999999999999999999999      99999999999999886421  111   123457899999999999999999


Q ss_pred             ceEEEEeeCChhHHH--HHHHHHHhhhcc-ccCCCchHHHHHHhcccccc
Q 017967          313 IGAMNVVCSSSDLAA--RVKSQLKRLARP-MYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       313 vG~i~~v~~~~~~~~--~~~~~l~~~~~~-~~~~~s~~~q~~~~~~l~~~  359 (363)
                      +||+  +++++ .++  .+.+.+...... ...+++.+.|.++...++..
T Consensus       257 ~G~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  303 (398)
T 3ele_A          257 IGYV--LVPDE-VYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGAT  303 (398)
T ss_dssp             CEEE--ECCTT-STTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCC
T ss_pred             eEEE--EEcch-hhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCH
Confidence            9999  77644 211  234444433322 35688889999998887654

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1.2e-33  Score=271.56  Aligned_cols=272  Identities=17%  Similarity=0.154  Sum_probs=211.9

Q ss_pred             CCCCCchhhHHHHHhcC--CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhc
Q 017967           64 MAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG  141 (363)
Q Consensus        64 ~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~  141 (363)
                      ..+++++.++...++..  ..++.|+|+.|.+.     ...++.+.+++.+.+.... .+|.+..|..++|+++++++..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~   93 (389)
T 1o4s_A           20 EIPISKTMELDAKAKALIKKGEDVINLTAGEPD-----FPTPEPVVEEAVRFLQKGE-VKYTDPRGIYELREGIAKRIGE   93 (389)
T ss_dssp             HSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCS-----SCCCHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHHH
T ss_pred             hcCccHHHHHHHHHHHHHhcCCCEEEccCCCCC-----CCCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHH
Confidence            34455566665544322  23478999999862     1135778888777664433 5788888999999999999876


Q ss_pred             CCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHH
Q 017967          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      .++..+++++|++  |+||++++.++.  ..++.+||+|++++|+|..+...++..|++++.+|.++++++.+|++.+++
T Consensus        94 ~~g~~~~~~~v~~--~~g~t~al~~~~--~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  169 (389)
T 1o4s_A           94 RYKKDISPDQVVV--TNGAKQALFNAF--MALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEG  169 (389)
T ss_dssp             HHTCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHH
T ss_pred             HhCCCCCHHHEEE--ecCHHHHHHHHH--HHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHH
Confidence            5566667889988  999999999984  344679999999999999999999999999999998543467899999999


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      .+++   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.   ..++..+....+++++++|
T Consensus       170 ~l~~---~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~---~~~~~~~~~~~~~~i~~~s  243 (389)
T 1o4s_A          170 LLVG---KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE---FTSILDVSEGFDRIVYING  243 (389)
T ss_dssp             TCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC---CCCHHHHCSSSTTEEEEEE
T ss_pred             hccc---CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC---CCCHhhcCCCCCcEEEEee
Confidence            8863   466778899999999999999999999999999999999999999987531   2233333222468999999


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |||.+|++|+|+||+  +++ ++    +++.+.........+++.++|.++..+|+.
T Consensus       244 ~sK~~~~~G~r~G~l--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~  293 (389)
T 1o4s_A          244 FSKSHSMTGWRVGYL--ISS-EK----VATAVSKIQSHTTSCINTVAQYAALKALEV  293 (389)
T ss_dssp             STTTTTCGGGCCEEE--ECC-HH----HHHHHHHHHHHHTCSCCHHHHHHHHHHTTC
T ss_pred             chhhcCCcccceEEE--EeC-HH----HHHHHHHHhhhcccCCCHHHHHHHHHHHhc
Confidence            999999999999999  665 66    455555554444567889999988877754

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=5.9e-34  Score=271.90  Aligned_cols=266  Identities=13%  Similarity=0.058  Sum_probs=209.3

Q ss_pred             CCCchhhHHHHHhcCC-CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCC
Q 017967           66 PPDPILGVSEAFKADT-DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (363)
Q Consensus        66 ~~~~~~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (363)
                      +++++.++...++... +.++|+|+.|.+.     ...++.+.+++.+...  ...+|++..|..++|+++++++...++
T Consensus         5 ~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~-----~~~~~~v~~a~~~~~~--~~~~y~~~~g~~~lr~~la~~l~~~~g   77 (376)
T 3ezs_A            5 EPYPFERLRALLKEITPKKRGLDLGIGEPQ-----FETPKFIQDALKNHTH--SLNIYPKSAFEESLRAAQRGFFKRRFK   77 (376)
T ss_dssp             CCCHHHHHHHHHTTCCCSSCCCBCSSCCCC-----SCCCHHHHHHHHTTGG--GGGSCCCTTCCHHHHHHHHHHHHHHHS
T ss_pred             CcchHHHHHHHHHhhhccCCEEEeCCCCCC-----CCCCHHHHHHHHHhhh--hcCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            4556777776665422 2389999999852     1145778888766552  236798888999999999999977666


Q ss_pred             CcccCCcEEEEeccchhHHHHHHHHHHHHhCC--CCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHH
Q 017967          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFP--GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (363)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~--gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  222 (363)
                      ..+++++|++  |+|++++++++  +..++.+  ||+|+++.|+|..+...++..|++++.++++++.  ++++ .+++.
T Consensus        78 ~~~~~~~i~~--t~g~~~al~~~--~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~l~~~  150 (376)
T 3ezs_A           78 IELKENELIS--TLGSREVLFNF--PSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKEN--DFTP-SLNEK  150 (376)
T ss_dssp             CCCCGGGEEE--ESSSHHHHHHH--HHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG--TSCC-CCCHH
T ss_pred             CCCCHHHEEE--CcCcHHHHHHH--HHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCC--Ccch-hHHhh
Confidence            6667899988  99999999988  4445678  9999999999999999999999999999985432  3444 66666


Q ss_pred             HHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh-----cCCeEE
Q 017967          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-----RGMELL  297 (363)
Q Consensus       223 l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-----~~~~vi  297 (363)
                      +.+   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.   ..+.....+     ..++++
T Consensus       151 ~~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i  224 (376)
T 3ezs_A          151 ELQ---EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP---PPSLLEACMLAGNEAFKNVL  224 (376)
T ss_dssp             HHH---HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC---CCCHHHHHHHTTCTTCTTEE
T ss_pred             hcc---CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC---CCCHHHccccccccccCcEE
Confidence            663   355777799999999999999999999999999999999999999988642   223333333     568899


Q ss_pred             EEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       298 ~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++.||||.+|++|+|+||+  +++ ++    +++.+........++++.++|.++...|+.
T Consensus       225 ~~~s~sK~~g~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  278 (376)
T 3ezs_A          225 VIHSLSKRSSAPGLRSGFI--AGD-SR----LLEKYKAFRAYLGYTSANAIQKASEAAWLD  278 (376)
T ss_dssp             EEEESTTTTTCGGGCCEEE--EEC-HH----HHHHHHHHHTTTCCCCCHHHHHHHHHHHHC
T ss_pred             EEecchhccCCccceeEEE--eeC-HH----HHHHHHHHHhhhcCCCChHHHHHHHHHHhC
Confidence            9999999999999999999  664 66    566666665555678899999998887765

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.1e-34  Score=282.44  Aligned_cols=261  Identities=13%  Similarity=0.081  Sum_probs=209.5

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .+++|+|+.|.+.     ..+++.+.+++.+.+......+|.+..|..++|+++++++...++..+++++|++  |+|++
T Consensus        43 g~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~--t~g~t  115 (437)
T 3g0t_A           43 GTKFCRMEMGVPG-----LPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVP--TVGSM  115 (437)
T ss_dssp             TCCCEECCCCSCC-----SCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESHHH
T ss_pred             CCCEEeccCcCCC-----CCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEE--eCCHH
Confidence            4589999999862     2246778887777664333267988889999999999999877777778899988  99999


Q ss_pred             HHHHHHHHHHHHh--CCCC--EEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcC
Q 017967          162 GSLRLAAALIERY--FPGA--KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (363)
Q Consensus       162 ~al~l~~~l~~~~--~~gd--~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~  237 (363)
                      ++++++  +..++  .+||  +|+++.|+|..+...++..|++++.++++ ++++.+|++.++++++.  .+++++++++
T Consensus       116 ~al~~~--~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~l~~  190 (437)
T 3g0t_A          116 QGCFVS--FLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQT--GQFCSIIYSN  190 (437)
T ss_dssp             HHHHHH--HHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTT--TCCCEEEEES
T ss_pred             HHHHHH--HHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhc--CCceEEEEeC
Confidence            999998  44445  8999  99999999999999999999999999986 45677899999999942  3456777799


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCch---hHH-HHHHhcCCeEEEEEcCccccccccccc
Q 017967          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA---SSV-RLFATRGMELLVAQSYSKNLGLYAERI  313 (363)
Q Consensus       238 p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~---~~~-~~~~~~~~~vi~~~S~SK~~~l~G~Rv  313 (363)
                      ||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...   +++ ..+.+..++++++.||||.+|++|+|+
T Consensus       191 p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~  269 (437)
T 3g0t_A          191 PNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD-YSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRI  269 (437)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC-CCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC-cCcccccchhhccCCCCCcEEEEEcCccCCCCcccee
Confidence            999999999999999999999999999999999999887631 111   000 222233688999999999999999999


Q ss_pred             eEEEEeeCChhHHHHHHH-H-----------------HHhhhccccCCCchHHHHHHhccccccccC
Q 017967          314 GAMNVVCSSSDLAARVKS-Q-----------------LKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       314 G~i~~v~~~~~~~~~~~~-~-----------------l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ||+  +++ ++    +++ .                 +.........+++.++|.++..+|+..+.|
T Consensus       270 G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  329 (437)
T 3g0t_A          270 GVL--MIS-GK----LYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDG  329 (437)
T ss_dssp             EEE--EEC-HH----HHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTT
T ss_pred             EEE--EEC-HH----HhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhH
Confidence            999  766 55    444 4                 444444456689999999999988876655

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=5.9e-34  Score=275.79  Aligned_cols=278  Identities=17%  Similarity=0.178  Sum_probs=210.2

Q ss_pred             chhhHHHHHhcCCC-CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhc------
Q 017967           69 PILGVSEAFKADTD-EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG------  141 (363)
Q Consensus        69 ~~~~~~~~~~~~~~-~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~------  141 (363)
                      ++..+...+....+ +++|+|+.|.|... ....+++.+.+++.+.+......+|++..|..++|+++|+++.+      
T Consensus        18 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~-~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~   96 (416)
T 1bw0_A           18 PIRTVSDNAKPSPSPKPIIKLSVGDPTLD-KNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKE   96 (416)
T ss_dssp             HHHHHHHTCCCCCSCSCCEECCCCCTTTT-SCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCST
T ss_pred             HHHHHHHHHHHhhcCCCeEEecCcCCCcc-cCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccc
Confidence            35444444433222 37899999986321 12345678888877766543336798888999999999999872      


Q ss_pred             CCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHH
Q 017967          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      ..+..+++++|++  |+|++++++++.  ..++.+||+|+++.|+|..+...++..|++++.++++++.++.+|++.+++
T Consensus        97 ~~~~~~~~~~v~~--~~g~~~al~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  172 (416)
T 1bw0_A           97 ELKSTIVKDNVVL--CSGGSHGILMAI--TAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRR  172 (416)
T ss_dssp             TTGGGCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHH
T ss_pred             cCCCCCCcceEEE--eCChHHHHHHHH--HHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHH
Confidence            3566677899988  999999999884  344679999999999999999999999999999998644457799999999


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCC--chhHHHHHHhcCCeEEEE
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN--DASSVRLFATRGMELLVA  299 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~~~~~~~vi~~  299 (363)
                      .+++   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++...  ...++..+ +...+++++
T Consensus       173 ~l~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~~~~~~i~~  248 (416)
T 1bw0_A          173 LKDD---KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF-ETTVPRVIL  248 (416)
T ss_dssp             HCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS-CCSCCEEEE
T ss_pred             Hhcc---CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHc-cCCCcEEEE
Confidence            8863   46678889999999999999999999999999999999999999988754200  11122111 233468999


Q ss_pred             EcCccccccccccceEEEEeeCCh-hHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          300 QSYSKNLGLYAERIGAMNVVCSSS-DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       300 ~S~SK~~~l~G~RvG~i~~v~~~~-~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +||||.|+++|+|+||+  +++++ +.++.+...++.... ...+++.++|.++..+|+.
T Consensus       249 ~s~sK~~~~~Glr~G~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~  305 (416)
T 1bw0_A          249 GGTAKNLVVPGWRLGWL--LYVDPHGNGPSFLEGLKRVGM-LVCGPCTVVQAALGEALLN  305 (416)
T ss_dssp             EESTTTTSCGGGCCEEE--EEECTTCSCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHS
T ss_pred             ecchhhCCCCCceEEEE--EeeCchhhHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHhc
Confidence            99999999999999999  77655 444445544443321 2347889999999887763

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.1e-34  Score=275.28  Aligned_cols=255  Identities=15%  Similarity=0.074  Sum_probs=201.1

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      .++|+|+.|.+. . +   .++.+.+++.+.+......+|++..|..++|+++++++...++..++++ +|++  |+|++
T Consensus        25 ~~~idl~~~~~~-~-~---~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~--~~g~~   97 (376)
T 2dou_A           25 VGLIDLSIGSTD-L-P---PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALA--LIGSQ   97 (376)
T ss_dssp             CCCEECSSCCCC-C-C---CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEE--ESSHH
T ss_pred             CCEEeccCCCCC-C-C---CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cCCcH
Confidence            478999999862 1 1   3567888877766432236787767999999999999866556556666 9988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++++++.  ..++.+||+|+++.|+|..+...++..|++++.+|+  ++++.+|++.+++.++.   +++++++++||||
T Consensus        98 ~a~~~~~--~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~---~~~~v~l~~p~np  170 (376)
T 2dou_A           98 EGLAHLL--LALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWR---EAKVLLLNYPNNP  170 (376)
T ss_dssp             HHHHHHH--HHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHH---HEEEEEECSSCTT
T ss_pred             HHHHHHH--HHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhcc---CceEEEECCCCCC
Confidence            9999884  444679999999999999999999999999999998  44567899999998863   4667888899999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.+++.   ..+...+.+..+++++++||||.+|++|+|+||+  +++
T Consensus       171 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~~~  245 (376)
T 2dou_A          171 TGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE---APSPLALPGAKERVVELFSLSKSYNLAGFRLGFA--LGS  245 (376)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC---CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEE--EEC
T ss_pred             cCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC---CCChhhcCCCCCcEEEEecchhhcCChhheeEEE--ecC
Confidence            99999999999999999999999999999999987532   1122112233467899999999999999999999  665


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccccc
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQR  361 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~  361 (363)
                       ++    +++.+.........+++.++|.++...|+..++
T Consensus       246 -~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~  280 (376)
T 2dou_A          246 -EE----ALARLERVKGVIDFNQYAGVLRMGVEALKTPKE  280 (376)
T ss_dssp             -HH----HHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHH
T ss_pred             -HH----HHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHH
Confidence             66    455555544444557889999999888776333

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=1.1e-34  Score=280.55  Aligned_cols=271  Identities=16%  Similarity=0.104  Sum_probs=203.4

Q ss_pred             CchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcc
Q 017967           68 DPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVL  147 (363)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~  147 (363)
                      ..+..+..........++|+|+.|.+. . +   .++.+.+++.+.+......+|++..|..++|+++++++...++..+
T Consensus        32 ~~~~~~~~~~~~~~g~~~idl~~g~~~-~-~---~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~  106 (404)
T 2o1b_A           32 SYFGKTMGRKIEHGPLPLINMAVGIPD-G-P---TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTL  106 (404)
T ss_dssp             CTTC-------CCCSSCCEECCCCSCS-S-C---CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred             hHHHHHHHHHHhcCCCCEEecCCcCCC-C-C---CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            334444433332222368999999862 1 1   3567777777665322125687778999999999999866556556


Q ss_pred             cC-CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC
Q 017967          148 KE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (363)
Q Consensus       148 ~~-~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (363)
                      ++ ++|++  |.|++++++++.  ..++.+||+|+++.|+|..+...++..|.+++.+++++ +++.+|++.+++.++. 
T Consensus       107 ~~~~~v~~--t~G~~~al~~~~--~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~-  180 (404)
T 2o1b_A          107 DKEDEVCI--LYGTKNGLVAVP--TCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQIID-  180 (404)
T ss_dssp             CTTTSEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHHH-
T ss_pred             CCcccEEE--cCCcHHHHHHHH--HHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhcc-
Confidence            65 79988  999999999884  44467999999999999999999999999999999853 4566899999998863 


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc
Q 017967          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (363)
Q Consensus       227 ~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  306 (363)
                        +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.   ..++..+....++++++.||||.|
T Consensus       181 --~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~sK~~  255 (404)
T 2o1b_A          181 --KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAK---NPSILASENGKDVAIEIYSLSKGY  255 (404)
T ss_dssp             --HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSC---CCCGGGSTTHHHHEEEEEESTTTT
T ss_pred             --CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC---CCChhhcCCCCCCEEEEEecchhc
Confidence              466777899999999999999999999999999999999999999987531   112211111225789999999999


Q ss_pred             ccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccccc
Q 017967          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQR  361 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~  361 (363)
                      |++|+|+||+  +++ ++    +++.+.........+++.++|.++...|+..++
T Consensus       256 g~~G~r~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~  303 (404)
T 2o1b_A          256 NMSGFRVGFA--VGN-KD----MIQALKKYQTHTNAGMFGALQDAAIYALNHYDD  303 (404)
T ss_dssp             TCGGGCCEEE--EEC-HH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHH
T ss_pred             cCchhheEeE--ecC-HH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHH
Confidence            9999999999  664 66    455555554445568899999999888765333

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=9.9e-34  Score=273.63  Aligned_cols=274  Identities=19%  Similarity=0.164  Sum_probs=207.7

Q ss_pred             CCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhc
Q 017967           62 VTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFG  141 (363)
Q Consensus        62 v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~  141 (363)
                      +.......+. ..+.+..++ ++.|+|+.|.+....  ...++.+.+++.+.+.... ..|++..|..++|+++++++..
T Consensus        19 ~~~~~~~~~~-~~~~~~~~g-~~~i~l~~~~~~~~~--~~~~~~v~~a~~~~~~~~~-~~y~~~~g~~~l~~~la~~l~~   93 (406)
T 1xi9_A           19 VEYAIRDVVL-PARELEKKG-IKVIRLNIGDPVKFD--FQPPEHMKEAYCKAIKEGH-NYYGDSEGLPELRKAIVEREKR   93 (406)
T ss_dssp             CCC--------CHHHHHHTT-CCCEECCCCCGGGTT--CCCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHH-HHHHHHHcC-CCEEEecCCCCCcCC--CCCCHHHHHHHHHHHhcCC-CCCCCCCCcHHHHHHHHHHHHH
Confidence            3333333444 445555543 479999999862101  1135677777766664432 5798888999999999999977


Q ss_pred             CCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHH
Q 017967          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      .++..+++++|++  |+||++++.++.  ..++.+||+|++++|+|..+...++..|++++.+++++++++.+|++.+++
T Consensus        94 ~~g~~~~~~~v~~--t~g~~~al~~~~--~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  169 (406)
T 1xi9_A           94 KNGVDITPDDVRV--TAAVTEALQLIF--GALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRK  169 (406)
T ss_dssp             HHCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHH
T ss_pred             hcCCCCCHHHEEE--cCChHHHHHHHH--HHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHH
Confidence            6666677899988  999999999984  344679999999999999999999999999999998643456789999999


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCe-EEEEE
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVAQ  300 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~-vi~~~  300 (363)
                      .+++   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++.   ...++..+ + .++ +++++
T Consensus       170 ~l~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~-~-~~~~~i~~~  241 (406)
T 1xi9_A          170 KITD---RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG---EHISPGSL-T-KDVPVIVMN  241 (406)
T ss_dssp             HCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS---CCCCHHHH-C-SSSCEEEEE
T ss_pred             hhCc---CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC---CCCCHHHc-C-CCceEEEEe
Confidence            8863   46677789999999999999999999999999999999999999998742   12234444 3 567 89999


Q ss_pred             cCccccccccccceEEEEe--eCCh----hHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          301 SYSKNLGLYAERIGAMNVV--CSSS----DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       301 S~SK~~~l~G~RvG~i~~v--~~~~----~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      ||||.+|++|+|+||+  +  ++ +    +    +++.+....... .+++.++|.++..+|+..+
T Consensus       242 s~sK~~~~~G~r~G~~--~~~~~-~~~~~~----l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~  299 (406)
T 1xi9_A          242 GLSKVYFATGWRLGYM--YFVDP-ENKLSE----VREAIDRLARIR-LCPNTPAQFAAIAGLTGPM  299 (406)
T ss_dssp             ESTTTTCCGGGCCEEE--EEECT-TCTTHH----HHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCC
T ss_pred             ccccccCCCccEEEEE--EEecC-chhHHH----HHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCc
Confidence            9999999999999999  5  55 5    5    455555444333 5788899999888775333

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.5e-34  Score=276.47  Aligned_cols=257  Identities=15%  Similarity=0.140  Sum_probs=200.5

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt  161 (363)
                      ++.|+|+.|.+. .    ..++.+.+++.+.+... ...|.+..|..++|+++++++...++..++++ +|++  |.||+
T Consensus        25 ~~~i~l~~~~~~-~----~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~--t~g~~   96 (411)
T 2o0r_A           25 IGAVNLGQGFPD-E----DGPPKMLQAAQDAIAGG-VNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLV--TVGAT   96 (411)
T ss_dssp             TTCEESSCSSCS-S----CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE--EEHHH
T ss_pred             CCeeeccCcCCC-C----CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEE--eCCHH
Confidence            368999999862 1    13567777777766443 36798888999999999999876556556677 9988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccC-CCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      +++.++.  ..++.+||+|+++.|+|..+...++..|++++.++++++ .++.+|++.|++.++   ++++++++++|||
T Consensus        97 ~al~~~~--~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~~~n  171 (411)
T 2o0r_A           97 EAIAAAV--LGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT---PRTRALIINSPHN  171 (411)
T ss_dssp             HHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC---TTEEEEEEESSCT
T ss_pred             HHHHHHH--HHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc---cCceEEEEeCCCC
Confidence            9999884  444679999999999999999999999999999998532 246699999999886   3467778899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      |||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+....+.++++.||||.+|++|+|+||+  ++
T Consensus       172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~~  247 (411)
T 2o0r_A          172 PTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA--RHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWA--CG  247 (411)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEE--EC
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcChhhccCCCCCEEEEeechhhcCCccceEEEE--ee
Confidence            999999999999999999999999999999999987532  11222222112467999999999999999999999  66


Q ss_pred             CChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccccc
Q 017967          321 SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQR  361 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~  361 (363)
                      + ++    +++.+........++.+.+.|.++...|+..++
T Consensus       248 ~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~  283 (411)
T 2o0r_A          248 P-AE----LIAGVRAAKQYLSYVGGAPFQPAVALALDTEDA  283 (411)
T ss_dssp             C-HH----HHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHH
T ss_pred             C-HH----HHHHHHHHHhhccCCCChHHHHHHHHHHhCChH
Confidence            4 76    444454444333456778888888777764333

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=7.1e-34  Score=271.25  Aligned_cols=258  Identities=13%  Similarity=0.090  Sum_probs=207.0

Q ss_pred             HHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           76 AFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        76 ~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      .++.++ +++|+|+.|.+.     ...++.+.+++.+.+.... .+|++ .| .++|+++++++...++..+++++|++ 
T Consensus        17 ~~d~~g-~~~idl~~~~~~-----~~~~~~v~~a~~~~~~~~~-~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~-   86 (377)
T 3fdb_A           17 KWTRYG-QGVLPLWVAESD-----FSTCPAVLQAITDAVQREA-FGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFP-   86 (377)
T ss_dssp             HHHSSC-TTSEECCSSCCC-----SCCCHHHHHHHHHHHHTTC-CSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEE-
T ss_pred             eeeccC-CCeeeecccCCC-----CCCCHHHHHHHHHHHHcCC-CCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEE-
Confidence            344444 389999999752     2246778888777665433 67988 77 89999999999877777777899988 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEE
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i  235 (363)
                       |+||+++++++  +..++.+||+|+++.|+|..+...++..|++++.+|+++  +  +|++.+++.+++   +++++++
T Consensus        87 -t~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~--~d~~~l~~~l~~---~~~~v~i  156 (377)
T 3fdb_A           87 -IPDVVRGLYIA--IDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATG--G--INLHDVEKGFQA---GARSILL  156 (377)
T ss_dssp             -ESCHHHHHHHH--HHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTT--S--CCHHHHHHHHHT---TCCEEEE
T ss_pred             -eCChHHHHHHH--HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCC--C--CCHHHHHHHhcc---CCCEEEE
Confidence             99999999988  444567999999999999999999999999999999853  2  999999999984   3567888


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCC-CCCchhHHHHHHhcCCeEEEEEcCccccccccccce
Q 017967          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS-LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (363)
Q Consensus       236 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG  314 (363)
                      ++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ .  ...++..+ +..++++++.||||.+|++|+|+|
T Consensus       157 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~-~~~~~~i~~~s~sK~~g~~G~r~G  233 (377)
T 3fdb_A          157 CNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQH--TVAAGVSD-TAASVCITITAPSKAWNIAGLKCA  233 (377)
T ss_dssp             ESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCC--CCGGGSCH-HHHHHEEEEECSTTTTTCGGGCCE
T ss_pred             eCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCC--CcccHHHc-cCCCcEEEEEeChHhccCcchhhe
Confidence            9999999999999999999999999999999999999988764 1  12222222 224688999999999999999999


Q ss_pred             EEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          315 AMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       315 ~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      |+  ++++++    +++.+.........+++.++|.++...|+..++|
T Consensus       234 ~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  275 (377)
T 3fdb_A          234 QI--IFSNPS----DAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDF  275 (377)
T ss_dssp             EE--ECCSHH----HHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHH
T ss_pred             EE--EeCCHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHH
Confidence            98  776777    5566665555555689999999988877664443

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=2.4e-33  Score=272.76  Aligned_cols=254  Identities=14%  Similarity=0.069  Sum_probs=201.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccch
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSG  160 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~gg  160 (363)
                      +.|+|+.|.+. .    ..++.+.+++.+.+...  ...+|.+..|..++|+++++++...++..++++ +|++  |.||
T Consensus        38 ~~i~l~~~~~~-~----~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g~  110 (429)
T 1yiz_A           38 KPLNLGQGFPD-Y----HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLV--TVGA  110 (429)
T ss_dssp             CCEECCSSSCS-S----CCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESHH
T ss_pred             CEEEecCCCCC-C----CCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEE--ecCh
Confidence            78999999862 1    13567788877766431  126788888999999999999866555556678 9988  9999


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCC--------CCCCCHHHHHHHHHcCCCCcEE
Q 017967          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK--------TVGLDFEGMIADIKAAPGGSFI  232 (363)
Q Consensus       161 t~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~--------~~~~d~~~l~~~l~~~~~~~~~  232 (363)
                      +++++++.  ..++.+||+|+++.|+|..+...++..|++++.+|++.++        ++++|++.|++.++   +++++
T Consensus       111 ~~a~~~~~--~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~  185 (429)
T 1yiz_A          111 YEALYATI--QGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN---EKTKM  185 (429)
T ss_dssp             HHHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC---TTEEE
T ss_pred             HHHHHHHH--HHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc---cCceE
Confidence            99999884  3446799999999999999999999999999999986432        56899999999885   35677


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccccc
Q 017967          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (363)
Q Consensus       233 ~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~R  312 (363)
                      +++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+.+..++++++.||||.+|++|+|
T Consensus       186 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r  263 (429)
T 1yiz_A          186 IIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRICTLPGMWERTITIGSAGKTFSLTGWK  263 (429)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS--CCCCGGGSTTTGGGEEEEEEHHHHHTCGGGC
T ss_pred             EEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC--CCcChhhccCCcCceEEEecchhccCCCCcc
Confidence            77899999999999999999999999999999999999999987542  1122222212346899999999999999999


Q ss_pred             ceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          313 IGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       313 vG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +||+  +++ ++    +++.+........++++.+.|.++..+|+.
T Consensus       264 ~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~  302 (429)
T 1yiz_A          264 IGWA--YGP-EA----LLKNLQMVHQNCVYTCATPIQEAIAVGFET  302 (429)
T ss_dssp             CEEE--ESC-HH----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             eEEE--EeC-HH----HHHHHHHHHhhcccCCChHHHHHHHHHHhc
Confidence            9999  665 66    455555544445567889999988888776

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=5.7e-34  Score=277.34  Aligned_cols=260  Identities=18%  Similarity=0.209  Sum_probs=198.8

Q ss_pred             CCcEEeecccc-CCCCCCccccHHH--HHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCc---EEEEe
Q 017967           83 EKKLNLGVGAY-RTEELQPYVLDVV--KKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQR---VATVQ  156 (363)
Q Consensus        83 ~~~i~l~~g~~-~~~~~~~~~~~~v--~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~---i~~~~  156 (363)
                      +++|||+.|.| ..  +.   ++.+  .+++.+.+......+|++..|..++|+++|+++...+ ..+++++   |++  
T Consensus        47 ~~~i~l~~g~~~~~--~~---~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~--  118 (430)
T 2x5f_A           47 STTYNATIGMATNK--DG---KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIV--  118 (430)
T ss_dssp             TCSEECCCSSCEET--TE---ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEE--
T ss_pred             CCcEEeeeeeccCC--CC---chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEE--
Confidence            47999999986 31  11   2222  3333222222123679888899999999999986553 5556788   888  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEE
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i  235 (363)
                      |.|++++++++.  ..++.+||+|+++.|+|..+...++. .|++++.++++++ ++++|++.+++.+++.+.+++++++
T Consensus       119 t~g~~~al~~~~--~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~~v~i  195 (430)
T 2x5f_A          119 TNALTHGLSLVG--DLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK-DGHYTTDSLVEALQSYNKDKVIMIL  195 (430)
T ss_dssp             ESHHHHHHHHHH--HHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCT-TSCBCSHHHHHHHHHCCSSEEEEEE
T ss_pred             cCCchHHHHHHH--HHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCc-cCCcCHHHHHHHHHhcCCCCEEEEE
Confidence            999999999984  44467999999999999999999999 9999999998543 3789999999999854446778888


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHh-----cCCeEEEecCCCCCcCCCCCCchhHHH-HHHhcCCe---EEEEEcCcccc
Q 017967          236 GCAHNPTGIDPTPEQWEKIADVIQE-----KNHIPFFDVAYQGFASGSLDNDASSVR-LFATRGME---LLVAQSYSKNL  306 (363)
Q Consensus       236 ~~p~NPTG~~~s~~~~~~i~~~~~~-----~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~~~---vi~~~S~SK~~  306 (363)
                      ++||||||.+++.+++++|+++|++     +|+++|+||+|.++.+++.  ...++. .+....++   +++++||||.|
T Consensus       196 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~  273 (430)
T 2x5f_A          196 NYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV--YTQSLFTALTNLHSNAILPIRLDGATKEF  273 (430)
T ss_dssp             CSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS--CCSCHHHHHHTTCCTTEEEEEEEEHHHHT
T ss_pred             cCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc--cchHHHHHHhhccCCcceEEEEEecccCC
Confidence            9999999999999999999999999     9999999999999987642  122333 34333567   99999999999


Q ss_pred             ccccccceEEEEee--CChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          307 GLYAERIGAMNVVC--SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       307 ~l~G~RvG~i~~v~--~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |++|+|+||+  ++  ++++.++++........+..+.+++.++|.++..+|+
T Consensus       274 ~~~G~riG~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~  324 (430)
T 2x5f_A          274 FAWGFRVGFM--TFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLK  324 (430)
T ss_dssp             TCGGGCCEEE--EEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCeEEE--EEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHc
Confidence            9999999999  66  3577444443322211122567899999999988876

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=100.00  E-value=3e-33  Score=272.12  Aligned_cols=256  Identities=14%  Similarity=0.157  Sum_probs=198.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHc--------c--CCCCCCCCCcchHHHHHHHHHHHhcCCCCc--ccCCc
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLE--------R--GENKEYLPIEGLAAFNKVTAELLFGADNSV--LKEQR  151 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~--------~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~--~~~~~  151 (363)
                      +.|+|+.+++      ++.++.+.+++.....        .  .....|++..|..+||+++|+++...++..  +++++
T Consensus        37 ~~i~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~  110 (428)
T 1iay_A           37 GVIQMGLAEN------QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPER  110 (428)
T ss_dssp             SBEECSSCCC------CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTS
T ss_pred             ceeeeccccc------hhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhh
Confidence            6889986653      4445677777664321        0  012568888899999999999997655544  66889


Q ss_pred             EEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEEecccCCCCCCCHHHHHHHHHc---CC
Q 017967          152 VATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADIKA---AP  227 (363)
Q Consensus       152 i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~  227 (363)
                      |++  |+|++++++++  +..++.+||+|+++.|+|..+...+. ..|++++.+|.++++++++|++.+++++++   ..
T Consensus       111 i~~--~~G~~~ai~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  186 (428)
T 1iay_A          111 VVM--AGGATGANETI--IFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSN  186 (428)
T ss_dssp             CEE--EEHHHHHHHHH--HHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTT
T ss_pred             EEE--ccChHHHHHHH--HHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcC
Confidence            988  99999999888  34446799999999999999987554 789999999985445678999999998874   12


Q ss_pred             CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-------CCeEEEEE
Q 017967          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-------GMELLVAQ  300 (363)
Q Consensus       228 ~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-------~~~vi~~~  300 (363)
                      .+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+...       .++++++.
T Consensus       187 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~viv~~  264 (428)
T 1iay_A          187 IKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP--QFVSIAEILDEQEMTYCNKDLVHIVY  264 (428)
T ss_dssp             CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS--CCCCHHHHHTSGGGTTSCTTSEEEEE
T ss_pred             CceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC--CccCHHHhccccccccCCCCcEEEEe
Confidence            3467788899999999999999999999999999999999999999877532  12233344333       58899999


Q ss_pred             cCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       301 S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ||||.||++|+|+||+  ++++++    +++.+.....  .++++.++|.++..+|++.
T Consensus       265 s~sK~~g~~Glr~G~~--~~~~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~  315 (428)
T 1iay_A          265 SLSKDMGLPGFRVGII--YSFNDD----VVNCARKMSS--FGLVSTQTQYFLAAMLSDE  315 (428)
T ss_dssp             ESTTTSSCGGGCEEEE--EESCHH----HHHHHHHHHT--TSCCCHHHHHHHHHHTTCH
T ss_pred             cchhhcCCCCceEEEE--EeCCHH----HHHHHHHHHh--cccCCHHHHHHHHHHhcCh
Confidence            9999999999999999  776677    4444444332  3578899999998888764

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=4.4e-33  Score=271.61  Aligned_cols=264  Identities=16%  Similarity=0.154  Sum_probs=206.7

Q ss_pred             HHhcCCCC-CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-----------CCCCCCCcchHHHHHHHHHHHhcC-
Q 017967           76 AFKADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-----------NKEYLPIEGLAAFNKVTAELLFGA-  142 (363)
Q Consensus        76 ~~~~~~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-----------~~~Y~~~~G~~~lr~aia~~l~~~-  142 (363)
                      .|+.+++| +.|+|+++.+      +...+.+.+++.+......           ..+|.+..|..+||+++++++... 
T Consensus        30 ~y~~~~~p~~~i~lg~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~  103 (435)
T 3piu_A           30 PYHEVHNTNGIIQMGLAEN------QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIR  103 (435)
T ss_dssp             BCBTTTBTTSBEECSSCCC------CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHT
T ss_pred             CCCcccCCCCeEEeccccc------cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhh
Confidence            35555665 6889998653      4557778777766442110           146989999999999999998733 


Q ss_pred             -CCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEEecccCCCCCCCHHHHH
Q 017967          143 -DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMI  220 (363)
Q Consensus       143 -~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~  220 (363)
                       .+..+++++|++  |+||+++++++  +..++.+||.|+++.|+|..+...+. ..|++++.++.+++.++.+|++.|+
T Consensus       104 ~~~~~~~~~~v~~--~~gg~~a~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~  179 (435)
T 3piu_A          104 GNKVTFDPNHLVL--TAGATSANETF--IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALE  179 (435)
T ss_dssp             TTSSCCCGGGEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHH
T ss_pred             CCCCCCCHHHEEE--cCChHHHHHHH--HHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHH
Confidence             345567899988  99999999988  44456799999999999999999888 7899999999865556789999999


Q ss_pred             HHHHc---CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-----
Q 017967          221 ADIKA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-----  292 (363)
Q Consensus       221 ~~l~~---~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-----  292 (363)
                      +++++   ...+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+...     
T Consensus       180 ~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~d~  257 (435)
T 3piu_A          180 EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDE  257 (435)
T ss_dssp             HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHHHC-----
T ss_pred             HHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcCHHHhcccccccc
Confidence            99874   122567888899999999999999999999999999999999999999877642  23344444332     


Q ss_pred             ----CCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          293 ----GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       293 ----~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                          .++++++.||||.||++|+|+||+  ++++++    +.+.++...  .+...+.+.|.+++.+|+..
T Consensus       258 ~~~~~~~~i~i~s~sK~~g~~G~r~G~~--~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~  320 (435)
T 3piu_A          258 NSEVWQRVHVVYSLSKDLGLPGFRVGAI--YSNDDM----VVAAATKMS--SFGLVSSQTQHLLSAMLSDK  320 (435)
T ss_dssp             --CGGGGEEEEEESSSSSCCGGGCEEEE--EESCHH----HHHHHHHHG--GGSCCCHHHHHHHHHHHHCH
T ss_pred             ccCCCCCEEEEEeeecccCCCceeEEEE--EeCCHH----HHHHHHHHh--hcCCCCHHHHHHHHHHhcCh
Confidence                578999999999999999999999  887776    444454443  34467888999888776643

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=3.6e-33  Score=271.46  Aligned_cols=257  Identities=14%  Similarity=0.178  Sum_probs=200.3

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCCCCc-ccCCcEEEEecc
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSV-LKEQRVATVQGL  158 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~-~~~~~i~~~~t~  158 (363)
                      .+++|||+.|.+. ..  .++.+.+.+++.+.+...  ...+|.+..|..++|+++++++...++.. +++++|++  |.
T Consensus        42 ~~~~idl~~g~~~-~~--~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~--t~  116 (425)
T 1vp4_A           42 DKDAISFGGGVPD-PE--TFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIF--TV  116 (425)
T ss_dssp             STTCEECCCCSCC-GG--GSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEE--EE
T ss_pred             CCCceeCCCCCCC-cc--cCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEE--ec
Confidence            4579999999862 22  234677777776665321  12579888899999999999985544544 56789988  99


Q ss_pred             chhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC-----CCCcEEE
Q 017967          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-----PGGSFIL  233 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~~~~~  233 (363)
                      |++++++++.  ..++.+||+|+++.|+|..+...++..|++++.+|.++  + ++|++.+++.+++.     ..+++++
T Consensus       117 G~~~al~~~~--~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~--~-~~d~~~l~~~l~~~~~~~~~~~~~~v  191 (425)
T 1vp4_A          117 GSQQALDLIG--KLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED--D-GMDLNVLERKLSEFDKNGKIKQVKFI  191 (425)
T ss_dssp             HHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET--T-EECHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             cHHHHHHHHH--HHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCC--C-CCCHHHHHHHHHhhhhcccCCCceEE
Confidence            9999999883  44467999999999999999999999999999999853  2 59999999998741     0134554


Q ss_pred             -EEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccccc
Q 017967          234 -LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER  312 (363)
Q Consensus       234 -~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~R  312 (363)
                       ++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+ +..++++++.||||.|| +|+|
T Consensus       192 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~~i~~~s~sK~~~-~G~r  267 (425)
T 1vp4_A          192 YVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE--TVDPIFKI-GGPERVVLLNTFSKVLA-PGLR  267 (425)
T ss_dssp             EEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC--CCCCHHHH-HCTTTEEEEEESTTTTC-GGGC
T ss_pred             EECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHHh-CCCCCEEEEeccccccc-cccc
Confidence             6899999999999999999999999999999999999999987542  12234333 44568999999999999 9999


Q ss_pred             ceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          313 IGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       313 vG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      +||+  +++ ++    +++.+.........+++.++|.++..+|+..
T Consensus       268 ~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~  307 (425)
T 1vp4_A          268 IGMV--AGS-KE----FIRKIVQAKQSADLCSPAITHRLAARYLERY  307 (425)
T ss_dssp             EEEE--ECC-HH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHS
T ss_pred             eEEE--eeC-HH----HHHHHHHHhhhhcCCCCHHHHHHHHHHHhcC
Confidence            9999  665 66    4555554444444577999999998887653

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=1.4e-32  Score=265.28  Aligned_cols=271  Identities=18%  Similarity=0.230  Sum_probs=206.0

Q ss_pred             CCCchhhHHHHHhc--CCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhc
Q 017967           66 PPDPILGVSEAFKA--DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFG  141 (363)
Q Consensus        66 ~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~  141 (363)
                      .++.+..+......  ....++|+|+.|.+. ..  .++.+.+.+++.+.+...  ... |++..|..++|+++++++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~-~~--~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~   90 (407)
T 2zc0_A           15 KGSALADVMKKASELQKKGVKLISLAAGDPD-PE--LIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKK   90 (407)
T ss_dssp             CCCHHHHHHHHHHHHHHSSCCCEECCSCCCC-TT--TSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhcccCCCCceEeCCCCCCC-ch--hCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHH
Confidence            34445555444431  111278999999862 22  234677777776665321  125 88888999999999999866


Q ss_pred             CCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHH
Q 017967          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      .++..+++++|++  |+|++++++++.  ..++.+||+|+++.|+|..+...++..|++++.+|.++   .++|++.+++
T Consensus        91 ~~g~~~~~~~v~~--t~g~t~a~~~~~--~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~---~~~d~~~l~~  163 (407)
T 2zc0_A           91 YDHLEVSPENIVI--TIGGTGALDLLG--RVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN---DGMRVDLLEE  163 (407)
T ss_dssp             HSCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET---TEECHHHHHH
T ss_pred             hcCCCCCcceEEE--ecCHHHHHHHHH--HHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC---CCCCHHHHHH
Confidence            5565567889988  999999999984  34467999999999999999999999999999999853   2599999999


Q ss_pred             HHH----cCCCCcEE-EEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeE
Q 017967          222 DIK----AAPGGSFI-LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (363)
Q Consensus       222 ~l~----~~~~~~~~-~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~v  296 (363)
                      .++    +.+ ++++ +++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+ +..+++
T Consensus       164 ~l~~~~~~~~-~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~~~~  239 (407)
T 2zc0_A          164 KIKELKAKGQ-KVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG--DIVPLKAL-DNEGRV  239 (407)
T ss_dssp             HHHHHHHTTC-CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS--SCCCGGGG-CSSCCE
T ss_pred             HHHhhhcccC-CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC--CCCChhhc-CCCCCE
Confidence            987    422 3444 46899999999999999999999999999999999999999987532  12222222 233589


Q ss_pred             EEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       297 i~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ++++||||.++ +|+|+||+  +++ ++    +++.+.........+++.+.|.++..+|+..
T Consensus       240 i~~~s~sK~~~-~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  294 (407)
T 2zc0_A          240 IVAGTLSKVLG-TGFRIGWI--IAE-GE----ILKKVLMQKQPIDFCAPAISQYIALEYLKRG  294 (407)
T ss_dssp             EEEEESTTTTC-TTSCCEEE--ECC-HH----HHHHHHHHHTTTTSSSCHHHHHHHHHHHHTT
T ss_pred             EEEcccccccC-CCcceEEE--ecC-HH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHcC
Confidence            99999999999 99999999  665 66    5566665555555677999999998887654

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=6e-33  Score=268.52  Aligned_cols=273  Identities=14%  Similarity=0.143  Sum_probs=209.7

Q ss_pred             CCCCCCCCchhhHHHHHhcC--CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHH
Q 017967           61 GVTMAPPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (363)
Q Consensus        61 ~v~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (363)
                      ++...+++++..+...++..  ..++.|+|+.|.+. .    ..++.+.+++ +.+.... ..|.+..|..++|++++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~-~----~~~~~v~~a~-~~l~~~~-~~y~~~~g~~~l~~~la~~   91 (409)
T 2gb3_A           19 RVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPD-L----KTPEVFFERI-YENKPEV-VYYSHSAGIWELREAFASY   91 (409)
T ss_dssp             HHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCC-S----CCCTHHHHHH-HHTCCSS-CCCCCTTCCHHHHHHHHHH
T ss_pred             HhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCCC-C----CCCHHHHHHH-HHHhcCC-CCCCCCCCcHHHHHHHHHH
Confidence            34445566666665544321  22478999999862 1    1356777777 6654332 5798888999999999999


Q ss_pred             HhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHH
Q 017967          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (363)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (363)
                      +...++..+++++|++  |+||+++++++.  ..++.+||+|+++.|+|..+...++..|++++.+++++++++.+ ++.
T Consensus        92 ~~~~~g~~~~~~~v~~--~~g~t~a~~~~~--~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~  166 (409)
T 2gb3_A           92 YKRRQRVDVKPENVLV--TNGGSEAILFSF--AVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQN  166 (409)
T ss_dssp             HHHTSCCCCCGGGEEE--ESHHHHHHHHHH--HHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTT
T ss_pred             HHHHhCCCCCHHHEEE--eCCHHHHHHHHH--HHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHH
Confidence            9887777778899988  999999999984  44467999999999999999999999999999999853234445 788


Q ss_pred             HHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEE
Q 017967          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (363)
Q Consensus       219 l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~  298 (363)
                      |++.+++   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.   ..+.  +....+++++
T Consensus       167 l~~~l~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~---~~~~--~~~~~~~~i~  238 (409)
T 2gb3_A          167 LESFINE---RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE---FASA--LSIESDKVVV  238 (409)
T ss_dssp             GGGGCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCG--GGSCCTTEEE
T ss_pred             HHHhhCc---CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC---CCCc--cccCCCCEEE
Confidence            8887752   567778899999999999999999999999999999999999999887531   1122  1122467999


Q ss_pred             EEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       299 ~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      ++||||.+|++|+|+||+  ++++++    +++.+........ +++.++|.++..+|+..+
T Consensus       239 ~~s~sK~~g~~G~r~G~~--~~~~~~----l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~  293 (409)
T 2gb3_A          239 IDSVSKKFSACGARVGCL--ITRNEE----LISHAMKLAQGRL-APPLLEQIGSVGLLNLDD  293 (409)
T ss_dssp             EEESTTTTTCGGGCCEEE--ECSCHH----HHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCH
T ss_pred             EecchhccCCccceEEEE--EECcHH----HHHHHHHHHhccC-CCCHHHHHHHHHHHhccH
Confidence            999999999999999999  777536    4555555444444 888999999888876533

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=100.00  E-value=5.1e-33  Score=272.13  Aligned_cols=253  Identities=15%  Similarity=0.172  Sum_probs=193.9

Q ss_pred             CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHcc----CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      ..+++|+|+.|.+ +..    .++.+.+++.+....    .....|++..|..+||+++++++.  ++..+++++|++  
T Consensus        67 ~~~~~i~l~~g~~-~~~----~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~--  137 (449)
T 3qgu_A           67 PDAKIISLGIGDT-TEP----LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFI--  137 (449)
T ss_dssp             TTCCCEECSSCCC-CCC----CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEE--
T ss_pred             CCCCEEEeeCCCC-CCC----CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEE--
Confidence            3458999999975 222    355666666555431    233679888999999999999987  667778899988  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC----------eEEEecccCCCCCCCHHHHHHHHHcC
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP----------WSEYRYYDPKTVGLDFEGMIADIKAA  226 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~----------~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (363)
                      |.|+++++.++   ..++.+||+|++++|+|.++...++..|.+          ++.++++++.++..+++.+       
T Consensus       138 t~G~~~al~~~---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  207 (449)
T 3qgu_A          138 SDGSKCDIARI---QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-------  207 (449)
T ss_dssp             ESCHHHHHHHH---HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-------
T ss_pred             ccCHHHHHHHH---HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-------
Confidence            99999999887   345789999999999999999999999998          9999986544555555432       


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc
Q 017967          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (363)
Q Consensus       227 ~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  306 (363)
                       ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.+|.+++.  ...++..+....++++++.||||.|
T Consensus       208 -~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~  284 (449)
T 3qgu_A          208 -KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPGADEVAIETCSFSKYA  284 (449)
T ss_dssp             -CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECSGGG
T ss_pred             -CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccCCCCcEEEEecchhhc
Confidence             2355677789999999999999999999999999999999999999987642  1223333322346789999999999


Q ss_pred             ccccccceEEEEeeCChhHHHH----HHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          307 GLYAERIGAMNVVCSSSDLAAR----VKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~~~~~~~~----~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |++|+|+||+  +++ ++.++.    +.+.+.......+.+++.++|.++...|++
T Consensus       285 g~~G~r~G~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  337 (449)
T 3qgu_A          285 GFTGVRLGWT--VVP-KALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQP  337 (449)
T ss_dssp             TCTTCCCEEE--ECC-TTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSH
T ss_pred             CCccceeEEE--ecC-HHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhh
Confidence            9999999999  766 442221    122444444556678999999999888765

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=5.3e-33  Score=267.52  Aligned_cols=257  Identities=11%  Similarity=0.086  Sum_probs=197.9

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      +++|+|+.|.+.     ..+++.+.+++.+.+.... .+|++.  ..++|+++++++...++..+++++|++  |+|+++
T Consensus        31 ~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--t~g~~~  100 (399)
T 1c7n_A           31 NEVVPLSVADME-----FKNPPELIEGLKKYLDETV-LGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIIN--TAGVVP  100 (399)
T ss_dssp             TTCCCCCSSSCS-----SCCCHHHHHHHHHHHHHCC-CSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSHHH
T ss_pred             CCceeeeecCCC-----CCCCHHHHHHHHHHHhcCC-CCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEE--cCCHHH
Confidence            378999988741     2246777777776664332 568654  899999999998665565566889988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCC-CCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++++.  ..++.+||+|+++.|+|.++...++..|++++.+|.++++ ++.+|++.|++.+++  .+++++++++||||
T Consensus       101 a~~~~~--~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~np  176 (399)
T 1c7n_A          101 AVFNAV--REFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNP  176 (399)
T ss_dssp             HHHHHH--HHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTT
T ss_pred             HHHHHH--HHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCCC
Confidence            999884  4446799999999999999999999999999999885222 355999999999973  24667778999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh-cCCeEEEEEcCccccccccccceEEEEee
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+.. ..++++++.||||.+|++|+|+||+  ++
T Consensus       177 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~~  252 (399)
T 1c7n_A          177 VGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI--II  252 (399)
T ss_dssp             TTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE--EC
T ss_pred             CCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHHcCccccCcEEEEEeChhhccccchheEEE--EE
Confidence            99999999999999999999999999999999987542  1122221111 1368999999999999999999999  77


Q ss_pred             CChhHHHHHHHHHHhhhccc-cCCCchHHHHHHhcccccccc
Q 017967          321 SSSDLAARVKSQLKRLARPM-YSNPPPMLLGIQLSSMNGKQR  361 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~~~-~~~~s~~~q~~~~~~l~~~~~  361 (363)
                      ++++    +++++....... +.+++.++|.++...|+..++
T Consensus       253 ~~~~----~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  290 (399)
T 1c7n_A          253 KNPD----IRERFTKSRDATSGMPFTTLGYKACEICYKECGK  290 (399)
T ss_dssp             CCHH----HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHH
T ss_pred             CCHH----HHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChH
Confidence            7666    444454443333 346889999988777765333

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=1.9e-32  Score=261.09  Aligned_cols=258  Identities=15%  Similarity=0.155  Sum_probs=201.4

Q ss_pred             CCCchhhHHHHHhcC--CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCC
Q 017967           66 PPDPILGVSEAFKAD--TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD  143 (363)
Q Consensus        66 ~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~  143 (363)
                      +++++.++.......  ..++.|+|+.|.+. .    ..++.+.+++.+.+.... .+|++..|..++|+++++++...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~-~----~~~~~v~~a~~~~~~~~~-~~y~~~~~~~~l~~~la~~~~~~~   83 (370)
T 2z61_A           10 ESFEVMDILALAQKLESEGKKVIHLEIGEPD-F----NTPKPIVDEGIKSLKEGK-THYTDSRGILELREKISELYKDKY   83 (370)
T ss_dssp             CCCTTHHHHHHHHHHHHTTCCCEECCCCSCS-S----CCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHHHHhcCCCEEEccCCCCC-C----CCCHHHHHHHHHHHHcCc-cCCCCCCCCHHHHHHHHHHHHHHh
Confidence            445565555444321  23478999999862 1    125677777776664433 679888899999999999998767


Q ss_pred             CCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHH
Q 017967          144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       144 ~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      +..+++++|++  |+||+++++++.  ..++.+||+|++++|+|..+...++..|++++.++        +|++.|++.+
T Consensus        84 g~~~~~~~v~~--~~g~~~a~~~~~--~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l  151 (370)
T 2z61_A           84 KADIIPDNIII--TGGSSLGLFFAL--SSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEAL  151 (370)
T ss_dssp             SCCCCGGGEEE--ESSHHHHHHHHH--HHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHC
T ss_pred             CCCCChhhEEE--CCChHHHHHHHH--HHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhc
Confidence            77778899988  999999999984  34467999999999999999999999999998886        6899999988


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCc
Q 017967          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  303 (363)
                      ++   +++++++++||||||.+++.+    |+++|+++|+++|+||+|.++.+++.   ..++..+.+..++++++.|||
T Consensus       152 ~~---~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~s  221 (370)
T 2z61_A          152 SD---KTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK---CYSAIEFDENLEKTILINGFS  221 (370)
T ss_dssp             CS---SEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC---CCCGGGTCTTCSSEEEEEEST
T ss_pred             cc---CceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC---CcCHHHccCCCCcEEEEecCh
Confidence            63   466777899999999999988    88889999999999999999987532   122222212346899999999


Q ss_pred             cccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       304 K~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |.+|++|+|+||+  +++ ++    +++.+.........+++.++|.++...|+.
T Consensus       222 K~~~~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  269 (370)
T 2z61_A          222 KLYAMTGWRIGYV--ISN-DE----IIEAILKLQQNLFISAPTISQYAALKAFEK  269 (370)
T ss_dssp             TTTTCGGGCCEEE--ECC-HH----HHHHHHHHHHHHTSSSCHHHHHHHGGGGSH
T ss_pred             hccCCccceEEEE--EEC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhc
Confidence            9999999999999  665 56    555555554445568899999999988875

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=9.7e-33  Score=264.43  Aligned_cols=257  Identities=12%  Similarity=0.131  Sum_probs=201.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ++|+|+.|.+.     ...++.+.+++.+.+.... ..|.+.  ..++++++++++...++..+++++|++  |+|++++
T Consensus        28 ~~i~~~~~~~~-----~~~~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~--~~g~~~a   97 (391)
T 3dzz_A           28 KELPMWIAEMD-----FKIAPEIMASMEEKLKVAA-FGYESV--PAEYYKAVADWEEIEHRARPKEDWCVF--ASGVVPA   97 (391)
T ss_dssp             TCEECCSSCCS-----SCCCHHHHHHHHHHHTTCC-CCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEE--ESCHHHH
T ss_pred             CceeccccCCC-----CCCCHHHHHHHHHHHhcCc-CCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--CCCHHHH
Confidence            79999999752     2246788888877765433 667655  689999999999877776777899988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecc-cCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++++  +..++.+||+|+++.|+|..+...++..|.+++.++++ ++.++.+|++.+++++++  ++++++++++|||||
T Consensus        98 ~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~npt  173 (391)
T 3dzz_A           98 ISAM--VRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT--PSVRMMVFCNPHNPI  173 (391)
T ss_dssp             HHHH--HHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS--TTEEEEEEESSBTTT
T ss_pred             HHHH--HHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc--cCceEEEEECCCCCC
Confidence            9988  44456799999999999999999999999999999985 233456999999999973  356777889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH-hcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      |.+++.+++++|+++|+++|+++|+||+|.++.+.+.  ...++..+. ...++++++.||||.+|++|+|+||+  +++
T Consensus       174 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~--~~~  249 (391)
T 3dzz_A          174 GYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACA--IIP  249 (391)
T ss_dssp             TBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEE--ECC
T ss_pred             CcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--CceehhhcCccccCcEEEEEeChhhccccchhheEE--EEC
Confidence            9999999999999999999999999999999987642  122222221 11468999999999999999999999  777


Q ss_pred             ChhHHHHHHHHHHhhhc-cccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLAR-PMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~-~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      +++    +++.+..... ....+++.++|.++...|...++|
T Consensus       250 ~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  287 (391)
T 3dzz_A          250 NPD----LRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDW  287 (391)
T ss_dssp             SHH----HHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHH
T ss_pred             CHH----HHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHH
Confidence            777    4444444322 234578888888887776654433

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=1.3e-32  Score=263.58  Aligned_cols=256  Identities=13%  Similarity=0.109  Sum_probs=201.5

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+|+.|.+.     ..+++.+.+++.+.+.... +.|.+  +..++++++++++...++..+++++|++  |+||++
T Consensus        32 ~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~-~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g~~~  101 (391)
T 4dq6_A           32 NDLLPMWVADMD-----FKAAPCIIDSLKNRLEQEI-YGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIY--SPGVIP  101 (391)
T ss_dssp             SCSEECCSSSCS-----SCCCHHHHHHHHHHHTTCC-CCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHHH
T ss_pred             CCceeccccCCC-----CCCCHHHHHHHHHHHhCCC-CCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEE--cCChHH
Confidence            489999998752     2346788888877765433 56654  5689999999998777776677899988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecc--cCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY--DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~--~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      +++++  +..++.+||+|+++.|+|..+...++..|++++.++++  ++.++.+|++.+++++++    ++++++++|||
T Consensus       102 a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~v~i~~p~n  175 (391)
T 4dq6_A          102 AISLL--INELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD----VKLFILCNPHN  175 (391)
T ss_dssp             HHHHH--HHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT----EEEEEEESSBT
T ss_pred             HHHHH--HHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc----CCEEEEECCCC
Confidence            99988  44446799999999999999999999999999999986  344567999999999873    67888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH-hcCCeEEEEEcCccccccccccceEEEEe
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      |||.+++.+++++|+++|+++|+++|+||+|.++.+++..  ..++..+. +..++++++.||||.+|++|+|+||+  +
T Consensus       176 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~  251 (391)
T 4dq6_A          176 PVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHK--HIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYV--V  251 (391)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEE--E
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCC--ccCHHHcCccccCcEEEEEechhhccCcccceEEE--E
Confidence            9999999999999999999999999999999999876421  12222221 11368899999999999999999999  8


Q ss_pred             eCChhHHHHHHHHHHhhhc-cccCCCchHHHHHHhccccccccC
Q 017967          320 CSSSDLAARVKSQLKRLAR-PMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~-~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      +++++    +++.+..... ...++++.++|.++...|...++|
T Consensus       252 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  291 (391)
T 4dq6_A          252 LPDEK----DYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESW  291 (391)
T ss_dssp             CCSHH----HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHH
T ss_pred             eCCHH----HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHH
Confidence            87657    4444444422 234578889998887777654443

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=3.7e-33  Score=271.51  Aligned_cols=250  Identities=14%  Similarity=0.105  Sum_probs=191.4

Q ss_pred             CCcEEeeccccCCCCCCccc-cHHHHHHH--HHHHcc--CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           83 EKKLNLGVGAYRTEELQPYV-LDVVKKAE--NLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~-~~~v~~a~--~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      +..|||+.|.|. ..  .++ .+.+.++.  .+.+..  ....+|++..|.++||+++|+++.      +++++|++  |
T Consensus        33 ~~~i~~~~G~p~-~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~------~~~~~i~~--t  101 (427)
T 3ppl_A           33 NLKLDLTRGKPS-SE--QLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLG------VPVEQVLA--G  101 (427)
T ss_dssp             CCCEECCCCSCC-HH--HHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHT------SCGGGEEE--C
T ss_pred             CceEecCCCCCC-hH--HCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhC------CCcceEEE--e
Confidence            478999999873 11  111 12344443  333321  224789999999999999999982      35789988  9


Q ss_pred             cchhHHH--HHHHHHHHHhC--C----------CCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHH
Q 017967          158 LSGTGSL--RLAAALIERYF--P----------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       158 ~ggt~al--~l~~~l~~~~~--~----------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      +|+++++  +++..  .++.  |          ||+|++++|+|..+...++..|++++.+|++++   ++|++.|++++
T Consensus       102 ~G~~~al~~~~~~~--~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l  176 (427)
T 3ppl_A          102 DASSLNIMFDVISW--SYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELV  176 (427)
T ss_dssp             SSCHHHHHHHHHHH--HHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHT
T ss_pred             CCcHHHHHHHHHHH--HHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHH
Confidence            9999999  46633  3344  5          899999999999999999999999999999642   59999999988


Q ss_pred             HcCCCCcEEEE-EcCCCCCCCCCCCHHHHHHHHHHH-HhcCCeEEEecCCCCCcCCCCCCchhHHHHHH---hcCCeEEE
Q 017967          224 KAAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFASGSLDNDASSVRLFA---TRGMELLV  298 (363)
Q Consensus       224 ~~~~~~~~~~~-i~~p~NPTG~~~s~~~~~~i~~~~-~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~---~~~~~vi~  298 (363)
                      +.  +++++++ +++||||||.+++.+++++|+++| +++|+++|+||+|.++.+++......++..+.   +..+++++
T Consensus       177 ~~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (427)
T 3ppl_A          177 KN--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWA  254 (427)
T ss_dssp             TS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEE
T ss_pred             hc--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEE
Confidence            42  2344444 558999999999999999999999 99999999999999977754322222333331   35679999


Q ss_pred             EEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       299 ~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++||||. +++|+|+||+  +++ ++    +++.+.........+++.+.|.+++.+|+.
T Consensus       255 ~~S~SK~-~~~G~r~G~~--~~~-~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  306 (427)
T 3ppl_A          255 FTSTSKI-TLAGAGVSFF--LTS-AE----NRKWYTGHAGIRGIGPNKVNQLAHARYFGD  306 (427)
T ss_dssp             EEESTTT-SCTTSSCEEE--ECC-HH----HHHHHHHHHHHHCSCCCHHHHHHHHHHHCS
T ss_pred             Eechhhc-cCcCccEEEE--EcC-HH----HHHHHHHHhhcccCCCCHHHHHHHHHHHhC
Confidence            9999999 6799999999  665 66    566666666666778999999999988876

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=100.00  E-value=2.4e-32  Score=266.08  Aligned_cols=250  Identities=16%  Similarity=0.190  Sum_probs=186.9

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHc----cCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE----RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~----~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      +++|+|++|.+. ..    .++.+.+++.+...    .....+|++..|..+||+++++++.+  +..+++++|++  |+
T Consensus        56 ~~~i~l~~~~~~-~~----~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~--t~  126 (432)
T 3ei9_A           56 AQVISLGIGDTT-EP----IPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFV--SD  126 (432)
T ss_dssp             CCCEECSSCCCC-SC----CCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEE--ES
T ss_pred             CCeEEccCCCCC-CC----CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEE--CC
Confidence            479999999863 22    34556666555443    12235788888999999999999863  45566889988  99


Q ss_pred             chhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCC------------CCeEEEecccCCCCCCCHHHHHHHHHcC
Q 017967          159 SGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR------------VPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (363)
Q Consensus       159 ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (363)
                      |+++++.++   ..++.+||.|+++.|+|.++...++..|            .+++.++++++.++..|++.       .
T Consensus       127 G~~~al~~l---~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~  196 (432)
T 3ei9_A          127 GAKCDISRL---QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-------V  196 (432)
T ss_dssp             CHHHHHHHH---HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-------C
T ss_pred             ChHHHHHHH---HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-------C
Confidence            999998865   4557899999999999999999888777            37888888544344455433       1


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc
Q 017967          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (363)
Q Consensus       227 ~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  306 (363)
                       ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.   ..++..+....++++++.||||.|
T Consensus       197 -~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~---~~~~~~~~~~~~~~i~~~S~SK~~  272 (432)
T 3ei9_A          197 -GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN---PRSIFEIPGAEEVAMETASFSNYA  272 (432)
T ss_dssp             -CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC---CSSGGGSTTGGGTEEEEEESHHHH
T ss_pred             -CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC---CCChhhcCCCCCeEEEEecchhcc
Confidence             2455777789999999999999999999999999999999999999987632   223322222346799999999999


Q ss_pred             ccccccceEEEEeeCChhH---HHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          307 GLYAERIGAMNVVCSSSDL---AARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~~~~~---~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |++|+|+||+  +++++..   ...+++.+.......+.+++.++|.++..+|.
T Consensus       273 g~~G~r~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  324 (432)
T 3ei9_A          273 GFTGVRLGWT--VIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLT  324 (432)
T ss_dssp             CTTTTCCEEE--ECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSS
T ss_pred             CCcccceEEE--EEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHh
Confidence            9999999999  7764420   00014445444445567899999998887775

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=5.2e-32  Score=259.13  Aligned_cols=259  Identities=19%  Similarity=0.156  Sum_probs=198.6

Q ss_pred             CCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCC
Q 017967           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (363)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (363)
                      .+..+..+......   ++.|+|+.|.+. .    ..++.+.+++.+.+..  ...|.+..|..++|+++++++..    
T Consensus        11 ~~~~~~~~~~~~~~---~~~i~l~~~~~~-~----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~~~----   76 (381)
T 1v2d_A           11 KESIFPRMSGLAQR---LGAVNLGQGFPS-N----PPPPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEFAV----   76 (381)
T ss_dssp             ---CHHHHHHHHHH---HTCEECCCCSCS-S----CCCHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHHTS----
T ss_pred             CccHHHHHHHHHhc---CCeEEecCCCCC-C----CCCHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHhcCC----
Confidence            33445444444433   368999999862 1    1457777777776644  35798878999999999999632    


Q ss_pred             cccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEeccc-CCCCCCCHHHHHHHHH
Q 017967          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIADIK  224 (363)
Q Consensus       146 ~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~l~  224 (363)
                        ++++|++  |.||+++++++.  ..++.+||+|++++|+|..+...++..|++++.++++. ++++.+|++.+++.++
T Consensus        77 --~~~~v~~--~~g~~~a~~~~~--~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~  150 (381)
T 1v2d_A           77 --EPESVVV--TSGATEALYVLL--QSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT  150 (381)
T ss_dssp             --CGGGEEE--ESSHHHHHHHHH--HHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC
T ss_pred             --ChhhEEE--cCChHHHHHHHH--HHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC
Confidence              2578877  999999999984  34467999999999999999999999999999999841 1347899999998875


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcc
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  304 (363)
                         ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++..   ..++..+  ..+.++++.||||
T Consensus       151 ---~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~---~~~~~~~--~~~~~~~~~s~sK  222 (381)
T 1v2d_A          151 ---PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER---PRRLREF--APERTFTVGSAGK  222 (381)
T ss_dssp             ---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC---CCCHHHH--CTTTEEEEEEHHH
T ss_pred             ---cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC---CCCHHHh--cCCCEEEEeechh
Confidence               3467778899999999999999999999999999999999999999987321   1233333  4578999999999


Q ss_pred             ccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          305 NLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       305 ~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      .+|++|+|+||+  +++ ++    +++.+........++++.+.|.++...|+..
T Consensus       223 ~~~~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  270 (381)
T 1v2d_A          223 RLEATGYRVGWI--VGP-KE----FMPRLAGMRQWTSFSAPTPLQAGVAEALKLA  270 (381)
T ss_dssp             HTTCGGGCCEEE--ECC-TT----THHHHHHHHHHHTSSCCHHHHHHHHHHHHHH
T ss_pred             hcCCcccceEEE--EeC-HH----HHHHHHHHHhhcccCCCcHHHHHHHHHHhCc
Confidence            999999999999  665 55    3444444443445578889999888777644

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=4.4e-32  Score=260.46  Aligned_cols=256  Identities=16%  Similarity=0.093  Sum_probs=195.0

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHH-HHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAA-FNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~-lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      +++|+|+.|.+.     ..+++.+.+++.+.+.... ..|++.  ..+ +|+++++++...++..+++++|++  |+|++
T Consensus        28 ~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~-~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~--t~g~~   97 (390)
T 1d2f_A           28 ADLLPFTISDMD-----FATAPCIIEALNQRLMHGV-FGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVI   97 (390)
T ss_dssp             --CEECCSSSCS-----SCCCHHHHHHHHHHHTTCC-CCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHH
T ss_pred             CCeeEeeecCCC-----CCCCHHHHHHHHHHHhCCC-CCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEE--cCCHH
Confidence            378999998752     1246788888877764433 578664  678 999999998776676677899988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCC-CCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      ++++++  +..++.+||+|+++.|+|..+...++..|++++.+|++.+. ++.+|++.+++.+++  .+++++++++|||
T Consensus        98 ~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~n  173 (390)
T 1d2f_A           98 YMVSEL--IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQN  173 (390)
T ss_dssp             HHHHHH--HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCT
T ss_pred             HHHHHH--HHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc--CCCeEEEEeCCCC
Confidence            999988  34446799999999999999999999999999999985432 356899999999973  2466777799999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      |||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+ .....-+ +.||||.+|++|+|+||+  ++
T Consensus       174 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~d~-~~s~sK~~~~~G~r~G~~--~~  247 (390)
T 1d2f_A          174 PTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNV-ARGDWAL-LTSGSKSFNIPALTGAYG--II  247 (390)
T ss_dssp             TTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGT-CCSSEEE-EECSHHHHTCGGGCCEEE--EE
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcCHHHc-chhhHhh-ccCccHhhcccChhheEE--EE
Confidence            999999999999999999999999999999999987532  12222111 1111023 999999999999999999  77


Q ss_pred             CChhHHHHHHHHHHhhhc--cccCCCchHHHHHHhccccccccC
Q 017967          321 SSSDLAARVKSQLKRLAR--PMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~--~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ++++    +++.+.....  ..+.+++.++|.++...|+..++|
T Consensus       248 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  287 (390)
T 1d2f_A          248 ENSS----SRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPW  287 (390)
T ss_dssp             CSHH----HHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHH
T ss_pred             CCHH----HHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHH
Confidence            7677    4455544433  234478899998887776643333

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=2.2e-31  Score=251.99  Aligned_cols=244  Identities=17%  Similarity=0.192  Sum_probs=197.6

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .+++|+|+.|.+.     ..+++.+.+++.+.+..  ...| +..|..++|+++++++.      +++++|++  |+||+
T Consensus        15 ~~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~------~~~~~i~~--~~g~~   78 (354)
T 3ly1_A           15 TDNPIRINFNENP-----LGMSPKAQAAARDAVVK--ANRY-AKNEILMLGNKLAAHHQ------VEAPSILL--TAGSS   78 (354)
T ss_dssp             SSSCEECSSCCCS-----SCCCHHHHHHHHHTGGG--TTSC-CHHHHHHHHHHHHHHTT------SCGGGEEE--ESHHH
T ss_pred             CCceEEccCCCCC-----CCCCHHHHHHHHHHHhh--CcCC-CCCchHHHHHHHHHHhC------CChHHEEE--eCChH
Confidence            3489999998752     22567888888776643  2667 66789999999999963      34689988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++++++.  ..++.+||+|+++.|+|..+...++..|++++.++.+  .++++|++.+++.+++. ++++++++++||||
T Consensus        79 ~a~~~~~--~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~~~-~~~~~v~l~~p~np  153 (354)
T 3ly1_A           79 EGIRAAI--EAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKML--DNWAFDIEGLKAAVAAY-SGPSIVYLVNPNNP  153 (354)
T ss_dssp             HHHHHHH--HHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHHHTC-SSCEEEEEESSCTT
T ss_pred             HHHHHHH--HHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhccC-CCCCEEEEeCCCCC
Confidence            9999983  4446799999999999999999999999999999984  35899999999999842 24667778999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC-CeEEEEEcCccccccccccceEEEEee
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG-MELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      ||.+++.+++.+|+++| ++|+++|+||+|.++.+++.   ..+.....+.. +++++++||||.+|++|+|+||+  ++
T Consensus       154 tG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~~  227 (354)
T 3ly1_A          154 TGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPR---FRSISPMITQGAENIILLKTFSKIHAMAGMRVGYA--VA  227 (354)
T ss_dssp             TCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT---CCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEE--EC
T ss_pred             cCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccc---cCCHHHHhhhcCCCEEEEeeChhhccChhhhheee--ec
Confidence            99999999999999999 89999999999999887642   22233333445 88999999999999999999999  66


Q ss_pred             CChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          321 SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                       +++    +++.++.....  .+++.++|.++...|+..
T Consensus       228 -~~~----~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~  259 (354)
T 3ly1_A          228 -HPT----VIALMGRYVAG--EKINFSGVDAALASMNDS  259 (354)
T ss_dssp             -CHH----HHHHHGGGTTC--SCCCHHHHHHHHHHTTCH
T ss_pred             -CHH----HHHHHHHhcCC--CCCCHHHHHHHHHHhcCH
Confidence             466    66666665443  689999999998887753

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.98  E-value=3.6e-32  Score=264.28  Aligned_cols=260  Identities=16%  Similarity=0.080  Sum_probs=191.2

Q ss_pred             hhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHH---ccCCCCCCCCCcchHHHHHHHHHHHhcCCCCc
Q 017967           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML---ERGENKEYLPIEGLAAFNKVTAELLFGADNSV  146 (363)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~---~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~  146 (363)
                      ++.....++..  .++|+|+.|+| +... ..+++.+.+++.+..   ......+|++..|.++||+++|+++.      
T Consensus        21 ~~~~~~~l~~~--~~~i~l~~g~~-~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~------   90 (422)
T 3d6k_A           21 VTAKYAELKAK--NLSLDLTRGKP-SAEQ-LDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG------   90 (422)
T ss_dssp             HHHHHHHHHHT--TCCEECCCCSC-CHHH-HHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT------
T ss_pred             HHHHHHHHhcc--CCeEeCCCCCC-Chhh-CCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC------
Confidence            44444444443  25899999987 2110 112234555443221   11123689999999999999999983      


Q ss_pred             ccCCcEEEEeccchhHHH--HHHHHHHHHhCC------------CCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCC
Q 017967          147 LKEQRVATVQGLSGTGSL--RLAAALIERYFP------------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTV  212 (363)
Q Consensus       147 ~~~~~i~~~~t~ggt~al--~l~~~l~~~~~~------------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~  212 (363)
                      +++++|++  |+|+++++  .++...+  ..+            ||+|+++.|+|..|...++..|++++.+|++++   
T Consensus        91 ~~~~~i~~--t~G~~~al~l~~~~~~l--~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---  163 (422)
T 3d6k_A           91 LPADLVVA--QDGSSLNIMFDLISWSY--TWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE---  163 (422)
T ss_dssp             CCGGGEEE--CSSCHHHHHHHHHHHHH--HHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---
T ss_pred             CChhHEEE--ecchHHHHHHHHHHHHh--cCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC---
Confidence            35789988  99999996  5553322  234            347999999999999999999999999998532   


Q ss_pred             CCCHHHHHHHHHcCCCCcEEEE-EcCCCCCCCCCCCHHHHHHHHHHHH-hcCCeEEEecCCCC--CcCCCCCCchhHHHH
Q 017967          213 GLDFEGMIADIKAAPGGSFILL-HGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQG--FASGSLDNDASSVRL  288 (363)
Q Consensus       213 ~~d~~~l~~~l~~~~~~~~~~~-i~~p~NPTG~~~s~~~~~~i~~~~~-~~~~~ii~De~y~~--~~~~~~~~~~~~~~~  288 (363)
                      ++|++.|++.+++  .++++++ +++||||||.+++.+++++|+++|+ ++|+++|+||+|.+  |.+++  ....++..
T Consensus       164 g~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~--~~~~~~~~  239 (422)
T 3d6k_A          164 GPDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF--PIVHNVIE  239 (422)
T ss_dssp             EECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC--CCCCCHHH
T ss_pred             CCCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCC--CCCcChhh
Confidence            5999999999863  2345544 7999999999999999999999999 99999999999986  54332  12223322


Q ss_pred             H---HhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          289 F---ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       289 ~---~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +   .+..+++++++||||. +++|+|+||+  +++ ++    +++.+.........+++.++|.++..+|++
T Consensus       240 ~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~--~~~-~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~  304 (422)
T 3d6k_A          240 FAQAAGNPNRFWFMSSTSKI-THAGSGVSFF--ASS-KE----NIEWYASHANVRGIGPNKLNQLAHAQFFGD  304 (422)
T ss_dssp             HHHHTTCTTCEEEEEESTTT-SCTTSSCEEE--ECC-HH----HHHHHHHHHHHHCSCCCHHHHHHHHHHHCS
T ss_pred             HhhccCCCCcEEEEcChhhh-cCcccceEEE--EeC-HH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHhC
Confidence            2   2456789999999998 6799999999  766 66    556666555555668899999999988876

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.98  E-value=1.6e-31  Score=254.11  Aligned_cols=255  Identities=14%  Similarity=0.141  Sum_probs=200.1

Q ss_pred             CCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCC
Q 017967           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (363)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (363)
                      +..++..+.+.+..   +++|+|+.|++.     ..+++.+.+++.+....  ..+|++..+ .++|+++|+++.     
T Consensus        16 ~~~~~~~~~~~~~~---~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~-----   79 (365)
T 3get_A           16 PGKDIEVIAKEYGV---KEVIKLASNENP-----FGTPPKAIECLRQNANK--AHLYPDDSM-IELKSTLAQKYK-----   79 (365)
T ss_dssp             CCCCHHHHHHHTTC---SCCEECSSCCCT-----TCSCHHHHHHHHHHGGG--TTSCCCTTC-HHHHHHHHHHHT-----
T ss_pred             CCCCHHHHHHhcCC---CceEEecCCCCC-----CCCCHHHHHHHHHHHHh--hccCCCCCh-HHHHHHHHHHhC-----
Confidence            34445455444433   589999998852     22467888887776643  367877666 899999999973     


Q ss_pred             cccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc
Q 017967          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (363)
Q Consensus       146 ~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (363)
                       +++++|++  |+|++++++++  +..++.+||+|+++.|+|..+...++..|++++.+++ +++++ +|++.++++++ 
T Consensus        80 -~~~~~v~~--~~g~~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~-  151 (365)
T 3get_A           80 -VQNENIII--GAGSDQVIEFA--IHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHK-  151 (365)
T ss_dssp             -CCGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTT-
T ss_pred             -CCcceEEE--CCCHHHHHHHH--HHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhC-
Confidence             24689988  99999999988  4445679999999999999999999999999999998 34567 99999999987 


Q ss_pred             CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcC--CCCCCchhHHHHHHhcCCeEEEEEcCc
Q 017967          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLVAQSYS  303 (363)
Q Consensus       226 ~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~~vi~~~S~S  303 (363)
                        ++++++++++||||||.+++.+++.+|+++| ++|+++|+||+|.++.+  .+.  ...+.....+..+++++++|||
T Consensus       152 --~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~s  226 (365)
T 3get_A          152 --DEIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK--KHLEPCELIKEFDNVLYLGTFS  226 (365)
T ss_dssp             --TTEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG--GCCCHHHHHHHCTTEEEEEESS
T ss_pred             --CCCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc--ccccHhHHhccCCCEEEEeecc
Confidence              3577888899999999999999999999998 57999999999998874  221  1223333445668999999999


Q ss_pred             cccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          304 KNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       304 K~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |.+|++|+|+||+  ++ +++    +++.+......  ++++.++|.++...|+.
T Consensus       227 K~~~~~G~r~G~~--~~-~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~  272 (365)
T 3get_A          227 KLYGLGGLRIGYG--IA-NAN----IISAFYKLRAP--FNVSNLALKAAVAAMDD  272 (365)
T ss_dssp             STTSCTTTCCEEE--EE-CHH----HHHHHHHHSCT--TCSCHHHHHHHHHHHTC
T ss_pred             hHhcCcchheEEE--Ec-CHH----HHHHHHHhcCC--CCcCHHHHHHHHHHhCC
Confidence            9999999999999  66 477    56666555432  46999999999888775

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.98  E-value=1.7e-32  Score=265.26  Aligned_cols=267  Identities=19%  Similarity=0.130  Sum_probs=191.0

Q ss_pred             CCchhhHHHHH-hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC----CCCCCCCCcchHHHHHHHHHHHhc
Q 017967           67 PDPILGVSEAF-KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----ENKEYLPIEGLAAFNKVTAELLFG  141 (363)
Q Consensus        67 ~~~~~~~~~~~-~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~Y~~~~G~~~lr~aia~~l~~  141 (363)
                      ++.+..+...+ +...++++|+|+.|.|.   ..+.+.+.+.+++.+.....    ...+|.+..|.++||+++|+++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~   90 (417)
T 3g7q_A           14 HSGITRLMEDLNDGLRTPGAIMLGGGNPA---HIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRE   90 (417)
T ss_dssp             --CHHHHHHHHHC-----CCEECSCCCCC---CCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhhccCCCceEecCcCCC---CCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHH
Confidence            44555555444 44455789999999873   23444577777777665321    114799999999999999999987


Q ss_pred             CCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCC-----EEEEc-CCCCcchHHHHh------hCCCCeEEEecccC
Q 017967          142 ADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA-----KVLIS-SPTWGNHKNIFN------DARVPWSEYRYYDP  209 (363)
Q Consensus       142 ~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd-----~Vlv~-~P~y~~~~~~~~------~~G~~~~~v~~~~~  209 (363)
                      .++..+++++|++  |+|++++++++.  ..++.+||     +|+++ .|+|..+...+.      ..+..+..++.+ .
T Consensus        91 ~~g~~~~~~~i~~--t~G~t~al~~~~--~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  165 (417)
T 3g7q_A           91 TLGWDIEPQNIAL--TNGSQSAFFYLF--NLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEG-Q  165 (417)
T ss_dssp             HHCCCCCGGGEEE--ESCHHHHHHHHH--HHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGG-E
T ss_pred             HhCCCCCcccEEE--eCCcHHHHHHHH--HHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCc-c
Confidence            7777788999988  999999999984  44467887     89997 999999987653      223344444431 1


Q ss_pred             CCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH
Q 017967          210 KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (363)
Q Consensus       210 ~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  289 (363)
                      .++.+|++.++  +.   ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|..+.......+..     
T Consensus       166 ~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~-----  235 (417)
T 3g7q_A          166 FKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR-----  235 (417)
T ss_dssp             EEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC-----
T ss_pred             cccccCHHHhc--cc---cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc-----
Confidence            24578999887  33   457888999999999999999999999999999999999999998643211000000     


Q ss_pred             HhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       290 ~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ....++++++.|||| ++++|+|+||+  +++ ++    +++++.........+++.++|.++..+|+..
T Consensus       236 ~~~~~~~i~~~s~sK-~~~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  297 (417)
T 3g7q_A          236 PLWNPNIILCMSLSK-LGLPGSRCGII--IAN-DK----TITAIANMNGIISLAPGGMGPAMMCEMIKRN  297 (417)
T ss_dssp             CCCCTTEEEEEESGG-GTCTTSCCEEE--ECC-HH----HHHHHHHHHHHHCCCCCSHHHHHHHHHHHTT
T ss_pred             cCCCCCEEEEEechh-ccCCCcceEEE--EeC-HH----HHHHHHHhhcceeeCCCcHHHHHHHHHHcCc
Confidence            123478999999999 68899999999  664 66    5666666666666788999999998877653

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.98  E-value=2.3e-31  Score=256.16  Aligned_cols=250  Identities=18%  Similarity=0.187  Sum_probs=194.0

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccc
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (363)
                      .+++|+|+.|.+. ..  .++.+.+.+++.+.+...  ...+|.+..|..++|+++++++.      +++++|++  |.|
T Consensus        31 ~~~~i~l~~g~~~-~~--~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g------~~~~~v~~--~~g   99 (397)
T 2zyj_A           31 RPGILSFAGGLPA-PE--LFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIG------VRPEEVLI--TTG   99 (397)
T ss_dssp             STTCEEESSCCCC-GG--GCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHT------SCGGGEEE--ESH
T ss_pred             CCCceecCCCCCC-ch--hCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhC------CChhhEEE--ecc
Confidence            3578999998852 22  234567777766554321  12578888899999999999982      34689988  999


Q ss_pred             hhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCC
Q 017967          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (363)
Q Consensus       160 gt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~  239 (363)
                      ++++++++.  ..++.+||+|+++.|+|..+...++..|++++.+|.++   .++|++.+++.+++. +...++++++||
T Consensus       100 ~~~al~~~~--~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~---~~~d~~~l~~~l~~~-~~~~v~~~~~~~  173 (397)
T 2zyj_A          100 SQQALDLVG--KVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE---EGPDLDALEEVLKRE-RPRFLYLIPSFQ  173 (397)
T ss_dssp             HHHHHHHHH--HHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET---TEECHHHHHHHHHHC-CCSCEEECCBSC
T ss_pred             HHHHHHHHH--HHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCC---CCCCHHHHHHHHhhc-CCeEEEECCCCc
Confidence            999999884  34467999999999999999999999999999999853   259999999999752 223445679999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC---CeEEEEEcCccccccccccceEE
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG---MELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~---~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      ||||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+ +..   +++++++||||.+| +|+|+||+
T Consensus       174 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~~~~~i~~~s~sK~~~-~G~r~G~~  249 (397)
T 2zyj_A          174 NPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA--RLPSLFEL-AREAGYPGVIYLGSFSKVLS-PGLRVAFA  249 (397)
T ss_dssp             TTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC--CCCCHHHH-HHHHTCCCEEEEEESTTTTC-GGGCCEEE
T ss_pred             CCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC--CCCchhhh-CcccCCCeEEEEeccccccc-ccceeEEE
Confidence            9999999999999999999999999999999999987532  12233333 223   68999999999999 99999999


Q ss_pred             EEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          317 NVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       317 ~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                        +++ ++    +++.+.........+++.++|.++..+|+..
T Consensus       250 --~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~  285 (397)
T 2zyj_A          250 --VAH-PE----ALQKLVQAKQGADLHTPMLNQMLVHELLKEG  285 (397)
T ss_dssp             --ECC-HH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHTTT
T ss_pred             --ecC-HH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhC
Confidence              665 66    4555554444444567999999998887754

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.98  E-value=2.1e-32  Score=274.21  Aligned_cols=222  Identities=12%  Similarity=0.049  Sum_probs=171.2

Q ss_pred             cEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcC-CCC---cccCCcEEEEeccch
Q 017967           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA-DNS---VLKEQRVATVQGLSG  160 (363)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~-~~~---~~~~~~i~~~~t~gg  160 (363)
                      .|+|++|.+.      +.++.+.+++.+....   .+|++..|..++|+++++++... .+.   ..++++|++  |.|+
T Consensus       106 ~i~l~~g~~~------~~~~~~~~al~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~--t~G~  174 (546)
T 2zy4_A          106 SLSYVRDQLG------LDPAAFLHEMVDGILG---CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFA--VEGG  174 (546)
T ss_dssp             HHHHHHHTSC------CCHHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEE--EEHH
T ss_pred             hhecccCCCC------CCChHHHHHHHHhhhc---CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEE--ECCH
Confidence            7899999862      2234455555444422   57998989999999988766432 222   225689988  9999


Q ss_pred             hHHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHHh--hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEE
Q 017967          161 TGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFN--DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (363)
Q Consensus       161 t~al~l~~~l~~---~~~~gd~Vlv~~P~y~~~~~~~~--~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i  235 (363)
                      ++++.++...+.   ++.|||.|++++|+|..|...+.  ..|++++.++++++.++.+|++.+++.+.   .+++++++
T Consensus       175 ~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l  251 (546)
T 2zy4_A          175 TAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD---PAIKIFFC  251 (546)
T ss_dssp             HHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS---TTEEEEEE
T ss_pred             HHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC---CCCeEEEE
Confidence            999998854331   35699999999999999998754  45788999998665567899999988764   35677888


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHH--HhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccc
Q 017967          236 GCAHNPTGIDPTPEQWEKIADVI--QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (363)
Q Consensus       236 ~~p~NPTG~~~s~~~~~~i~~~~--~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv  313 (363)
                      +|||||||.+++.+++++|+++|  +++|++||+||+|.+|.++     ..++...  ..+++++++||||.+|++|+|+
T Consensus       252 ~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~-----~~s~~~~--~~~~~i~~~S~SK~~g~~GlRi  324 (546)
T 2zy4_A          252 VNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD-----FQSLFAI--CPENTLLVYSFSKYFGATGWRL  324 (546)
T ss_dssp             ESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT-----CCCHHHH--CGGGEEEEEESTTTTTCGGGCE
T ss_pred             ECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc-----CcCHHHh--CCCCEEEEEeCccccCCCCcce
Confidence            89999999999999999999999  7899999999999999853     1233222  2368999999999999999999


Q ss_pred             eEEEEeeCChhHHHHH
Q 017967          314 GAMNVVCSSSDLAARV  329 (363)
Q Consensus       314 G~i~~v~~~~~~~~~~  329 (363)
                      ||+  ++++++.++++
T Consensus       325 G~~--~~~~~~l~~~l  338 (546)
T 2zy4_A          325 GVV--AAHQQNVFDLA  338 (546)
T ss_dssp             EEE--EEESSCHHHHH
T ss_pred             EEE--EECCHHHHHHH
Confidence            999  77755455554

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.98  E-value=1.3e-31  Score=260.17  Aligned_cols=258  Identities=14%  Similarity=0.073  Sum_probs=203.5

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+|++|.+.     ...++.+.+++.+...... +.|.+..  .++++++++++...++..+++++|++  |+|+++
T Consensus        61 ~~~i~~~~~~~~-----~~~~~~v~~a~~~~~~~~~-~~y~~~~--~~l~~~l~~~l~~~~g~~~~~~~v~~--~~g~~e  130 (421)
T 3l8a_A           61 PELLQMWVADMD-----FLPVPEIKEAIINYGREHI-FGYNYFN--DDLYQAVIDWERKEHDYAVVKEDILF--IDGVVP  130 (421)
T ss_dssp             TTCEECCSSCCC-----SCCCHHHHHHHHHHHHHCC-SSCBCCC--HHHHHHHHHHHHHHHCCCCCGGGEEE--ESCHHH
T ss_pred             CCeeecccCCCC-----CCCCHHHHHHHHHHHhcCC-cCCCCCC--HHHHHHHHHHHHHHhCCCCCHHHEEE--cCCHHH
Confidence            489999999742     2246777777776664433 5675543  79999999999877776677899988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecc-cCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      |++++.  ..++.+||+|+++.|+|.++...++..|.+++.+|++ .+.++.+|++.|++++++  ++++++++++||||
T Consensus       131 a~~~a~--~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~np  206 (421)
T 3l8a_A          131 AISIAL--QAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPHNP  206 (421)
T ss_dssp             HHHHHH--HHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSBTT
T ss_pred             HHHHHH--HHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCCCC
Confidence            999984  4446799999999999999999999999999999985 344567899999999974  35778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH-hcCCeEEEEEcCccccccccccceEEEEee
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      ||.+++.+++++|.++|+++|+++|+||+|.++.+.+..  ..++..+. +..++++++.|+||.+|++|+|+||+  ++
T Consensus       207 tG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~--~~  282 (421)
T 3l8a_A          207 GGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT--HHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFA--II  282 (421)
T ss_dssp             TTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEE--EC
T ss_pred             CCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CccHHHcCchhcCcEEEEEeChhhccCchhheEeE--Ec
Confidence            999999999999999999999999999999999876421  12222221 22468899999999999999999999  88


Q ss_pred             CChhHHHHHHHHHHhhh-ccccCCCchHHHHHHhccccccccC
Q 017967          321 SSSDLAARVKSQLKRLA-RPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~-~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ++++    +++.+.... ...+.+++.++|.++...|+..++|
T Consensus       283 ~~~~----l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~  321 (421)
T 3l8a_A          283 QNES----LRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPW  321 (421)
T ss_dssp             CSHH----HHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHH
T ss_pred             CCHH----HHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHH
Confidence            7777    444444443 2345578899999888877765555

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.97  E-value=2.3e-31  Score=256.62  Aligned_cols=250  Identities=18%  Similarity=0.166  Sum_probs=182.8

Q ss_pred             CCCCcEEeeccccCCCCCCccccHHHHHHHHHHHcc----CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           81 TDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        81 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      +.+++|+|+.|.+.     ..+++.+.+++.+....    ....+|.+..|..+||+++++++.  .+. +++++|++  
T Consensus        31 ~~~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~--  100 (400)
T 3asa_A           31 PQHTVINLSIGDTT-----QPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFI--  100 (400)
T ss_dssp             TTSCCEECSSCCCC-----CCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEE--
T ss_pred             CCCceEeccCCCCC-----CCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEE--
Confidence            34589999999862     12355666665554421    123679888899999999999964  343 56789988  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCC-eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEE
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVP-WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~-~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i  235 (363)
                      |.|+++++.++.   ..+.+||+|+++.|+|..+...++..|.+ ++.+|++++..+..+++.+        ++++++++
T Consensus       101 ~~G~~~al~~~~---~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~--------~~~~~v~l  169 (400)
T 3asa_A          101 SDGAKVDLFRLL---SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED--------THIDILCL  169 (400)
T ss_dssp             ESCHHHHHHHHH---HHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT--------CCCSEEEE
T ss_pred             ccChHHHHHHHH---HHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc--------cCccEEEE
Confidence            999999998863   44679999999999999999999999999 9999985433333443221        23456667


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceE
Q 017967          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       236 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~  315 (363)
                      ++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..  ..++..+....+++++++||||.||++|+|+||
T Consensus       170 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~  247 (400)
T 3asa_A          170 CSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSL--PKSIFEIPDARFCAIEINSFSKPLGFAGIRLGW  247 (400)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTS--CSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEE
T ss_pred             eCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCC--CCchhhCCCCCCceEEEecchhhcCCcchheeE
Confidence            899999999999999999999999999999999999988765311  112211111135789999999999999999999


Q ss_pred             EEEeeCChhH-------HHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          316 MNVVCSSSDL-------AARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       316 i~~v~~~~~~-------~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      +  +++ ++.       ++.+...   .....+.+++.++|.++..+|+..
T Consensus       248 ~--~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~  292 (400)
T 3asa_A          248 T--VIP-QELTYADGHFVIQDWER---FLSTTFNGASIPAQEAGVAGLSIL  292 (400)
T ss_dssp             E--ECC-TTCBCTTSCBHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHHT
T ss_pred             E--eeC-hhhccchhhhHHHHHHH---HhccCccCCChHHHHHHHHHhCcH
Confidence            9  776 443       3333221   112234578999999988877653

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.97  E-value=3.2e-31  Score=252.99  Aligned_cols=216  Identities=20%  Similarity=0.188  Sum_probs=181.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV  199 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~  199 (363)
                      .+|++..|..+||+++++++..     +++++|++  |+||++|+.++  +..++.+||+|+++.|+|..+...++..|+
T Consensus        57 ~~y~~~~g~~~l~~~la~~~~~-----~~~~~v~~--~~g~~~a~~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~  127 (375)
T 3op7_A           57 LNYGWIEGSPAFKKSVSQLYTG-----VKPEQILQ--TNGATGANLLV--LYSLIEPGDHVISLYPTYQQLYDIPKSLGA  127 (375)
T ss_dssp             CSSCCTTCCHHHHHHHHTTSSS-----CCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESSCTHHHHHHHHTTC
T ss_pred             cCCCCCCChHHHHHHHHHHhcc-----CChhhEEE--cCChHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcCC
Confidence            7899999999999999998632     34689988  99999999988  444578999999999999999999999999


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++++.++++.+|++.+++++++   +++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ 
T Consensus       128 ~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~-  203 (375)
T 3op7_A          128 EVDLWQIEEENGWLPDLEKLRQLIRP---TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELD-  203 (375)
T ss_dssp             EEEEEEEEGGGTTEECHHHHHHHCCT---TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSC-
T ss_pred             EEEEEeccccCCCCCCHHHHHHhhcc---CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccC-
Confidence            99999986555677899999999863   45677789999999999999999999999999999999999999988752 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                         ..+.   .+..++++++.||||.+|++|+|+||+  ++ +++    +++.++........+++.+.|.++...|+..
T Consensus       204 ---~~~~---~~~~~~~i~~~s~sK~~~~~G~r~G~v--~~-~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  270 (375)
T 3op7_A          204 ---VPSI---IEVYDKGIAVNSLSKTYSLPGIRIGWV--AA-NHQ----VTDILRDYRDYTMICAGVFDDLVAQLALAHY  270 (375)
T ss_dssp             ---CCCH---HHHCTTEEEEEESSSSSSCGGGCCEEE--EC-CHH----HHHHHTTTGGGTTSCCCHHHHHHHHHHHHTH
T ss_pred             ---CCch---hhhcCCEEEEeEChhhcCCcccceEEE--Ee-CHH----HHHHHHHHHhhhccCCCcHHHHHHHHHHhcc
Confidence               1122   234578899999999999999999999  66 577    6677766666666788899999887776654


Q ss_pred             cc
Q 017967          360 QR  361 (363)
Q Consensus       360 ~~  361 (363)
                      ++
T Consensus       271 ~~  272 (375)
T 3op7_A          271 QE  272 (375)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.97  E-value=7.4e-32  Score=261.75  Aligned_cols=253  Identities=15%  Similarity=0.094  Sum_probs=191.5

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHH--HHHcc-CCCCCC-CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEecc
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAEN--LMLER-GENKEY-LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGL  158 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~--~~~~~-~~~~~Y-~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~  158 (363)
                      .+.|||+.|.|... . ...++.+.+++.  +.... ....+| .+..|.++||+++|+++.      +++++|++  |+
T Consensus        25 ~~~i~l~~g~p~~~-~-~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~------~~~~~i~~--t~   94 (423)
T 3ez1_A           25 GLNLNMQRGQPADA-D-FDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLD------VKAENVLV--WN   94 (423)
T ss_dssp             TCCEESCCCCCCHH-H-HHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTT------SCGGGEEE--CS
T ss_pred             CceEecCCCCCChH-h-CCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhC------CChhhEEE--eC
Confidence            37899999987310 0 112334555543  33221 123679 888999999999999972      34789988  99


Q ss_pred             chhHHHH--HHHHHHHHhC--C---------CCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc
Q 017967          159 SGTGSLR--LAAALIERYF--P---------GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA  225 (363)
Q Consensus       159 ggt~al~--l~~~l~~~~~--~---------gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (363)
                      |+++++.  ++  +..++.  |         ||+|+++.|+|..+...++..|++++.+|++++   ++|++.|++++++
T Consensus        95 G~~~al~~~~~--~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~  169 (423)
T 3ez1_A           95 NSSLELQGLVL--TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDAVERLAGT  169 (423)
T ss_dssp             SCHHHHHHHHH--HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHHS
T ss_pred             CcHHHHHHHHH--HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC---CCCHHHHHHHHhh
Confidence            9999997  66  334455  7         599999999999999999999999999998642   6999999999963


Q ss_pred             CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHH-HhcCCeEEEecCCCCCcCCC-CCCchhHHHHH---HhcCCeEEEEE
Q 017967          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVI-QEKNHIPFFDVAYQGFASGS-LDNDASSVRLF---ATRGMELLVAQ  300 (363)
Q Consensus       226 ~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~-~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~---~~~~~~vi~~~  300 (363)
                      .++...++++++||||||.+++.+++++|+++| +++|+++|+||+|..+.+.+ ......++..+   .+..+++++++
T Consensus       170 ~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  249 (423)
T 3ez1_A          170 DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFA  249 (423)
T ss_dssp             CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEE
T ss_pred             CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEe
Confidence            233333445679999999999999999999999 99999999999999765543 11112223222   24568999999


Q ss_pred             cCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       301 S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ||||. +++|+|+||+  +++ ++    +++.+.........+++.++|.++..+|+.
T Consensus       250 S~sK~-~~~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  299 (423)
T 3ez1_A          250 STSKI-TFAGAGLGFV--ASS-ED----NIRWLSKYLGAQSIGPNKVEQARHVKFLTE  299 (423)
T ss_dssp             ESTTT-SCSSSSCEEE--EEC-HH----HHHHHHHHHHHSCSCCCHHHHHHHHHHHHH
T ss_pred             Cchhh-ccCCcceEEE--EeC-HH----HHHHHHHHHhhhccCCCHHHHHHHHHHHHh
Confidence            99998 5799999999  766 66    566666666666778999999999887765

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.97  E-value=6.6e-31  Score=250.08  Aligned_cols=241  Identities=20%  Similarity=0.141  Sum_probs=192.2

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .+++|+|+.|++.     ..+++.+.+++.+........+|++ .|..++|+++++++..    . ++++|++  |+|++
T Consensus        29 ~~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~g~----~-~~~~i~~--~~g~t   95 (367)
T 3euc_A           29 SHGLVKLDAMENP-----YRLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVMQV----P-AGMEVLL--GNGSD   95 (367)
T ss_dssp             CTTCEECCSSCCC-----CCCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHHTC----C-TTCEEEE--EEHHH
T ss_pred             CCCeeEccCCCCC-----CCCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHhCC----C-CcceEEE--cCCHH
Confidence            3479999998852     1245677777766554212256754 6899999999999733    1 3679988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++++++  +..++.+||+|+++.|+|..+...++..|++++.++++  .++++|++.+++++++.  +++++++++||||
T Consensus        96 ~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~np  169 (367)
T 3euc_A           96 EIISML--ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--ADFTLDRGAMLAAMAEH--QPAIVYLAYPNNP  169 (367)
T ss_dssp             HHHHHH--HHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECC--TTSCCCHHHHHHHHHHH--CCSEEEEESSCTT
T ss_pred             HHHHHH--HHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCC--CCCCCCHHHHHHHhhcc--CCCEEEEcCCCCC
Confidence            999988  44446799999999999999999999999999999984  36789999999999841  3557777899999


Q ss_pred             CCCCCCHHHHHHHHHHHHhc--CCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEe
Q 017967          242 TGIDPTPEQWEKIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      ||.+++.+++++|+++|+++  |+++|+||+|.+|...+.   ..    ..+..++++++.||||. +++|+|+||+  +
T Consensus       170 tG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~---~~----~~~~~~~~i~~~s~sK~-~~~G~r~G~~--~  239 (367)
T 3euc_A          170 TGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESW---MS----RLTDFGNLLVMRTVSKL-GLAGIRLGYV--A  239 (367)
T ss_dssp             TCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCS---GG----GGGTCTTEEEEEECCCT-TSCSCCEEEE--E
T ss_pred             CCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccch---HH----HHhhCCCEEEEecchhh-cccccCceee--e
Confidence            99999999999999999999  999999999999875421   11    23456789999999999 8999999999  6


Q ss_pred             eCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          320 CSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++ ++    +++.+.....  .++++.++|.++..+|+.
T Consensus       240 ~~-~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~  271 (367)
T 3euc_A          240 GD-PQ----WLEQLDKVRP--PYNVNVLTEATALFALEH  271 (367)
T ss_dssp             EC-HH----HHHHHGGGCC--SSCCCHHHHHHHHHHHTT
T ss_pred             eC-HH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcC
Confidence            64 66    5666665533  357899999999888876

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.97  E-value=6.3e-31  Score=249.85  Aligned_cols=240  Identities=15%  Similarity=0.150  Sum_probs=190.4

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .+++|+|+.|++.     ..+++.+.+++.+....  ...| +..+..++|+++++++.      +++++|++  |+||+
T Consensus        31 ~~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~------~~~~~v~~--~~g~t   94 (363)
T 3ffh_A           31 LTKITKLSSNENP-----LGTSKKVAAIQANSSVE--TEIY-PDGWASSLRKEVADFYQ------LEEEELIF--TAGVD   94 (363)
T ss_dssp             CSCCEECSSCSCT-----TCCCHHHHHHHHTCBSC--CCBC-----CHHHHHHHHHHHT------CCGGGEEE--ESSHH
T ss_pred             CCceEEccCCCCC-----CCCCHHHHHHHHHHHHH--hhcC-CCcchHHHHHHHHHHhC------CChhhEEE--eCCHH
Confidence            3589999998752     22467888887665432  2456 66789999999999974      23689988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++++++.  ..++.+||+|+++.|+|..+...++..|++++.++.+  .++.+|++.+++.++   ++++++++++||||
T Consensus        95 ~a~~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~p~np  167 (363)
T 3ffh_A           95 ELIELLT--RVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEHDLEGMLNAID---EKTTIVWICNPNNP  167 (363)
T ss_dssp             HHHHHHH--HHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECC--TTSCCCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred             HHHHHHH--HHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--CCCCcCHHHHHHhcc---cCCCEEEEeCCCCC
Confidence            9999983  4446799999999999999999999999999999984  368899999999886   35778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++.+|++.|++ |+++|+||+|.++.++ .   ..+........++++++.||||.+|++|+|+||+  ++ 
T Consensus       168 tG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~~-~---~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~~-  239 (363)
T 3ffh_A          168 TGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVTP-Q---PEKHEKLVRTYKNLIITRTFSKIYGLASARVGYG--IA-  239 (363)
T ss_dssp             TCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCSS-C---CCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEE--EE-
T ss_pred             cCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcCc-c---ccCHHHHhhcCCCEEEEeechhhhcCchhceeee--ec-
Confidence            9999999999999998887 9999999999988762 1   1122222345689999999999999999999999  66 


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +++    +++.+.....  .++++.++|.++...|+.
T Consensus       240 ~~~----~~~~l~~~~~--~~~~~~~~~~~~~~~l~~  270 (363)
T 3ffh_A          240 DKE----IIRQLNIVRP--PFNTTSIGQKLAIEAIKD  270 (363)
T ss_dssp             CHH----HHHHHHHTCC--SCCCBHHHHHHHHHHHHC
T ss_pred             CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcC
Confidence            477    5666665543  457899999999887764

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.97  E-value=6.9e-32  Score=263.58  Aligned_cols=273  Identities=16%  Similarity=0.118  Sum_probs=201.8

Q ss_pred             CCchhhHHHHH-hcCCCCCcE-EeeccccCCCCCCccccHHHHHHHHHHHcc-------C----CCCCCCCCcchHHHHH
Q 017967           67 PDPILGVSEAF-KADTDEKKL-NLGVGAYRTEELQPYVLDVVKKAENLMLER-------G----ENKEYLPIEGLAAFNK  133 (363)
Q Consensus        67 ~~~~~~~~~~~-~~~~~~~~i-~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-------~----~~~~Y~~~~G~~~lr~  133 (363)
                      +.++..+.... +...++++| +|+.|.|.   ..+.+.+.+.+++.+....       .    ...+|.+..|.++||+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~   90 (444)
T 3if2_A           14 PTGISQLMDDLGDALKSDQPVNMLGGGNPA---KIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFID   90 (444)
T ss_dssp             CCHHHHHHHHHHHHHHSSSCCEECSCCCCC---CCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHH
T ss_pred             chhHHHHHHHHHhhhcCchhhhccCCCCCC---cccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHH
Confidence            44555544333 222336899 99999873   2344446777777666533       1    1257999999999999


Q ss_pred             HHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCC--------------EEEEc-CCCCcchHH------
Q 017967          134 VTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA--------------KVLIS-SPTWGNHKN------  192 (363)
Q Consensus       134 aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd--------------~Vlv~-~P~y~~~~~------  192 (363)
                      ++|+++...++..+++++|++  |+|++++++++  +..++.+||              .|+++ .|+|..+..      
T Consensus        91 ~ia~~l~~~~g~~~~~~~i~~--t~G~t~al~~~--~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~  166 (444)
T 3if2_A           91 ALVGFFNRHYDWNLTSENIAL--TNGSQNAFFYL--FNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQ  166 (444)
T ss_dssp             HHHHHHHHHHCCCCCGGGEEE--ESSHHHHHHHH--HHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSC
T ss_pred             HHHHHHHhhcCCCCCHHHEEE--ecCcHHHHHHH--HHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccc
Confidence            999999877777788999988  99999999998  344456887              78876 999999987      


Q ss_pred             HHhhCCCCeEEEecccCC---CCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEec
Q 017967          193 IFNDARVPWSEYRYYDPK---TVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDV  269 (363)
Q Consensus       193 ~~~~~G~~~~~v~~~~~~---~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De  269 (363)
                      .+...|.+++.+++++++   ++++|++.|++++....++++++++++||||||.+++.+++++|+++|+++|+++|+||
T Consensus       167 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De  246 (444)
T 3if2_A          167 HFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDN  246 (444)
T ss_dssp             CEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             hhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEEC
Confidence            345678888888874311   35799999998843212457788889999999999999999999999999999999999


Q ss_pred             CCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHH
Q 017967          270 AYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLL  349 (363)
Q Consensus       270 ~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q  349 (363)
                      +|..+.......+..     ....++++++.||||. +++|+|+||+  +++ ++    +++.+.........+++.++|
T Consensus       247 ~~~~~~~~~~~~~~~-----~~~~~~~i~~~S~sK~-~~~G~r~G~~--~~~-~~----l~~~~~~~~~~~~~~~~~~~~  313 (444)
T 3if2_A          247 AYGMPFPNIIYSDAH-----LNWDNNTILCFSLSKI-GLPGMRTGII--VAD-AK----VIEAVSAMNAVVNLAPTRFGA  313 (444)
T ss_dssp             TTCTTTTCCBCSCCC-----CCCCTTEEEEEESTTT-TCGGGCCEEE--ECC-HH----HHHHHHHHHHHHHSSCCCHHH
T ss_pred             CCCCccccccccccc-----ccCCCCEEEEechhhc-cCCCCceEEE--EEC-HH----HHHHHHHHHHhccCCCChHHH
Confidence            998643211000000     1234789999999996 7899999999  654 66    555565555555668889999


Q ss_pred             HHHhcccccc
Q 017967          350 GIQLSSMNGK  359 (363)
Q Consensus       350 ~~~~~~l~~~  359 (363)
                      .++..+++..
T Consensus       314 ~a~~~~l~~~  323 (444)
T 3if2_A          314 AIATPLVAND  323 (444)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHcC
Confidence            9888777653

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.97  E-value=9.4e-31  Score=248.69  Aligned_cols=229  Identities=17%  Similarity=0.191  Sum_probs=180.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ++|+|+.|++.  .+++   +.+  +    . . ...+|++. +..++|+++|+++.      +++++|++  |+|++++
T Consensus        30 ~~i~l~~~~~~--~~~~---~~v--a----~-~-~~~~Y~~~-~~~~lr~~la~~~~------~~~~~v~~--~~G~~~a   87 (356)
T 1fg7_A           30 GDVWLNANEYP--TAVE---FQL--T----Q-Q-TLNRYPEC-QPKAVIENYAQYAG------VKPEQVLV--SRGADEG   87 (356)
T ss_dssp             CSEECSSCCCS--SCCC---CCC--C----C-C-CTTSCCCS-SCHHHHHHHHHHHT------SCGGGEEE--ESHHHHH
T ss_pred             ceEEeeCCCCC--CCCC---HhH--h----h-h-hhccCCCc-cHHHHHHHHHHHhC------CChHHEEE--cCCHHHH
Confidence            68999999863  1221   222  1    1 1 23678654 58999999999972      23689988  9999999


Q ss_pred             HHHHHHHHHHhCCC-CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          164 LRLAAALIERYFPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       164 l~l~~~l~~~~~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++++.  ..++.+| |+|+++.|+|..+...++..|++++.+|++  +++++|++.+++.++    +++++++++|||||
T Consensus        88 i~~~~--~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~----~~~~v~l~~p~npt  159 (356)
T 1fg7_A           88 IELLI--RAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD----GVKVVYVCSPNNPT  159 (356)
T ss_dssp             HHHHH--HHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT----TEEEEEEESSCTTT
T ss_pred             HHHHH--HHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc----CCCEEEEeCCCCCC
Confidence            99883  4446799 999999999999999999999999999884  457899999988764    35677789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|+++|+ +|+++|+||+|.++...   .   +...+.+..+++++++||||.||++|+|+||+  +++ 
T Consensus       160 G~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~---~---~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~~~-  229 (356)
T 1fg7_A          160 GQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ---A---SLAGWLAEYPHLAILRTLSKAFALAGLRCGFT--LAN-  229 (356)
T ss_dssp             CCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG---G---CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEE--EEC-
T ss_pred             CCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC---C---cHHHHHhhCCCEEEEecchHhhcCchhhhEEE--EeC-
Confidence            99999999999999999 99999999999988621   1   11122244578999999999999999999999  664 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++    +++.+..... . ++++.++|.++..+|++
T Consensus       230 ~~----~~~~l~~~~~-~-~~~~~~~~~a~~~~l~~  259 (356)
T 1fg7_A          230 EE----VINLLMKVIA-P-YPLSTPVADIAAQALSP  259 (356)
T ss_dssp             HH----HHHHHHHHSC-S-SCSCHHHHHHHHHHTSH
T ss_pred             HH----HHHHHHHhcC-C-CCCCHHHHHHHHHHhcC
Confidence            66    5566665533 2 37899999999888765

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.97  E-value=1.9e-30  Score=246.87  Aligned_cols=254  Identities=14%  Similarity=0.114  Sum_probs=190.8

Q ss_pred             CCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCc
Q 017967           67 PDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSV  146 (363)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~  146 (363)
                      +..+.++...+..++ .++|+|+.|.+.     ..+++.+.+++.+....  ..+|++ .|..++|+++++++.      
T Consensus         9 g~~~~~~~~~~~~~~-~~~idl~~~~~~-----~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~l~~~la~~~~------   73 (364)
T 1lc5_A            9 GGNIREPATVLGISP-DQLLDFSANINP-----LGMPVSVKRALIDNLDC--IERYPD-ADYFHLHQALARHHQ------   73 (364)
T ss_dssp             SCCCHHHHHHHTSCG-GGSEECSSCCCT-----TCCCHHHHHHHHHTGGG--GGSCCC-TTCHHHHHHHHHHHT------
T ss_pred             CccHHHHHHhcCCCc-cceEEeccccCC-----CCCCHHHHHHHHHHHHH--hhcCCC-CCHHHHHHHHHHHHC------
Confidence            344555555555443 368999998752     11457777877766533  256854 589999999999973      


Q ss_pred             ccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC
Q 017967          147 LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA  226 (363)
Q Consensus       147 ~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (363)
                      +++++|++  |+|++++++++...   + +||+|+++.|+|..+...++..|.+++.+|.++++++.+ ++.+.+.+.  
T Consensus        74 ~~~~~v~~--~~g~~~al~~~~~~---~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~--  144 (364)
T 1lc5_A           74 VPASWILA--GNGETESIFTVASG---L-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALT--  144 (364)
T ss_dssp             SCGGGEEE--ESSHHHHHHHHHHH---H-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCC--
T ss_pred             cCHHHEEE--CCCHHHHHHHHHHH---c-CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhcc--
Confidence            23678988  99999999988433   3 789999999999999999999999999999853223333 455555443  


Q ss_pred             CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc
Q 017967          227 PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (363)
Q Consensus       227 ~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  306 (363)
                       ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++..  ...   .+.+..++++++.||||.+
T Consensus       145 -~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~---~~~~~~~~~i~~~s~sK~~  218 (364)
T 1lc5_A          145 -PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET--GFI---PALKDNPHIWVLRSLTKFY  218 (364)
T ss_dssp             -TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC--CSG---GGCTTCTTEEEEEESTTTT
T ss_pred             -CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc--chh---hHhccCCCEEEEEECchhh
Confidence             3455777899999999999999999999999999999999999999876421  111   1123456899999999999


Q ss_pred             ccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |++|+|+||+  ++.+++    +++.+.....  ..+++.++|.++..+|+.
T Consensus       219 ~~~G~r~G~~--~~~~~~----~~~~l~~~~~--~~~~~~~~~~~~~~~l~~  262 (364)
T 1lc5_A          219 AIPGLRLGYL--VNSDDA----AMARMRRQQM--PWSVNALAALAGEVALQD  262 (364)
T ss_dssp             TCTTTCCEEE--ECCCHH----HHHHHHHHSC--TTCSCHHHHHHHHHGGGC
T ss_pred             cCCccceEEE--EECCHH----HHHHHHHhCC--CCCCCHHHHHHHHHHHhC
Confidence            9999999999  634577    5555555433  347899999999888876

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.97  E-value=9.3e-32  Score=269.09  Aligned_cols=245  Identities=15%  Similarity=0.097  Sum_probs=189.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCC-CCcchHHHHHHHHHHHhcC-CC-Cccc-CCcEEEEeccc
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGA-DN-SVLK-EQRVATVQGLS  159 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~l~~~-~~-~~~~-~~~i~~~~t~g  159 (363)
                      ++|+|++|.|..    + +++.+.++...+. .   .+|+ +..|.+++|+++++++... .+ ..+. +++|++  |.|
T Consensus       104 ~~i~l~~g~~~~----~-~~~~v~a~~~~~~-~---~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~--t~G  172 (533)
T 3f6t_A          104 DAVNYCHTELGL----N-RDKVVAEWVNGAV-A---NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFP--TEG  172 (533)
T ss_dssp             HHHHHHHHTTCC----C-HHHHHHHHHHHHH-T---CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEE--EEH
T ss_pred             hheeccCCCCCc----C-CcHHHHHHHHHHH-h---CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEE--ECC
Confidence            368999998731    1 2344444443333 2   3455 7889999999999998544 23 3444 468988  999


Q ss_pred             hhHHHHHHHHHHH---HhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEeccc--CCCCCCCHHHHHHHHHcCCCCcEEEE
Q 017967          160 GTGSLRLAAALIE---RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD--PKTVGLDFEGMIADIKAAPGGSFILL  234 (363)
Q Consensus       160 gt~al~l~~~l~~---~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~~~~~  234 (363)
                      +++++.++...+.   ++.+||+|+++.|+|..+...++..|.+++.++++.  +.++++|++.+++++.   +++++++
T Consensus       173 ~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~---~~~k~v~  249 (533)
T 3f6t_A          173 GTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD---PSIKALI  249 (533)
T ss_dssp             HHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC---TTEEEEE
T ss_pred             HHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC---CCCeEEE
Confidence            9999998843211   467999999999999999999999999999998854  4568999999999876   3567777


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHHHHH-hcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccc
Q 017967          235 HGCAHNPTGIDPTPEQWEKIADVIQ-EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (363)
Q Consensus       235 i~~p~NPTG~~~s~~~~~~i~~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv  313 (363)
                      +++||||||.+++.+++++|+++|+ ++|+++|+||+|.++.++.     .++...  ..+++++++||||.||++|+|+
T Consensus       250 l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~-----~~~~~~--~~~~~i~~~S~SK~~g~~G~Ri  322 (533)
T 3f6t_A          250 VVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF-----KSIYSV--VPYNTMLVYSYSKLFGCTGWRL  322 (533)
T ss_dssp             EESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC-----CCHHHH--SGGGEEEEEESHHHHTCGGGCE
T ss_pred             EeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc-----cCHhhc--CCCCEEEEecCcccCCCcccce
Confidence            8899999999999999999999999 6899999999999988752     122222  2468999999999999999999


Q ss_pred             eEEEEeeCChhHHHHHHHHH--------------------------------HhhhccccCCCchHHHHH
Q 017967          314 GAMNVVCSSSDLAARVKSQL--------------------------------KRLARPMYSNPPPMLLGI  351 (363)
Q Consensus       314 G~i~~v~~~~~~~~~~~~~l--------------------------------~~~~~~~~~~~s~~~q~~  351 (363)
                      ||+  ++++++.++++++.+                                +........+++.+.|.+
T Consensus       323 G~l--~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a  390 (533)
T 3f6t_A          323 GVI--ALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIM  390 (533)
T ss_dssp             EEE--EEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHH
T ss_pred             EEE--EECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHH
Confidence            999  777665555554432                                445556677889999988

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.95  E-value=2.7e-33  Score=269.34  Aligned_cols=258  Identities=16%  Similarity=0.082  Sum_probs=198.9

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      +++++|+.|.+ +..    .++.+.+++.+.+.... .+|.+.  ..++|+++++++...++..+++++|++  |+|+++
T Consensus        31 ~~~i~l~~~~~-~~~----~~~~v~~a~~~~~~~~~-~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--~~g~~~  100 (392)
T 3b1d_A           31 PQLLPAWIADM-DFE----VMPEVKQAIHDYAEQLV-YGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVF--VEGVVP  100 (392)
Confidence            37899999986 222    24556666555443322 567654  889999999998877776677889988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCC-CCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPK-TVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++.++.  ..++.+||+|+++.|+|..+...++..|.+++.+++++++ ++.+|++.+++.+++  .+++++++++||||
T Consensus       101 a~~~~~--~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~np  176 (392)
T 3b1d_A          101 AISIAI--QAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHNP  176 (392)
Confidence            999884  3346799999999999999999999999999999884322 356899999998863  23456777999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-CCeEEEEEcCccccccccccceEEEEee
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      ||.+++.+++++|+++|+++|+++|+||+|.++.+++.  ...++..+... .++++++.||||.+|++|+|+||+  ++
T Consensus       177 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~~  252 (392)
T 3b1d_A          177 GGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGH--EHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYA--II  252 (392)
Confidence            99999999999999999999999999999999987531  12233333221 578999999999999999999999  77


Q ss_pred             CChhHHHHHHHHHHhhhccc-cCCCchHHHHHHhccccccccC
Q 017967          321 SSSDLAARVKSQLKRLARPM-YSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~~~-~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ++++    +++.+....... +.+++.++|.++...|+..++|
T Consensus       253 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  291 (392)
T 3b1d_A          253 ENPT----LCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPW  291 (392)
Confidence            7666    455555554433 3467889999888888765555

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.97  E-value=2.1e-30  Score=245.75  Aligned_cols=236  Identities=16%  Similarity=0.170  Sum_probs=188.1

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      +++|||+.|.+.     ..+++.+.+++.+....  ...| +..+..++|+++++++.      +++++|++  |+||++
T Consensus        26 ~~~idl~~~~~~-----~~~~~~v~~a~~~~~~~--~~~y-~~~~~~~l~~~la~~~~------~~~~~i~~--~~g~t~   89 (361)
T 3ftb_A           26 RELLDYSSNINP-----LGIPKSFLNNIDEGIKN--LGVY-PDVNYRRLNKSIENYLK------LKDIGIVL--GNGASE   89 (361)
T ss_dssp             --CEETTCCCCT-----TCSCHHHHTTHHHHHHG--GGSC-CCTTCHHHHHHHHHHHT------CCSCEEEE--ESSHHH
T ss_pred             CCEEEecCCCCC-----CCCCHHHHHHHHHHHHH--hcCC-CCccHHHHHHHHHHHhC------CCcceEEE--cCCHHH
Confidence            479999999752     12456777777666543  2567 56788999999999973      23689988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      +++++..   .+   |+|+++.|+|..+...++..|++++.+++++  +.+++++.+++.+++    ++++++++|||||
T Consensus        90 al~~~~~---~~---d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~l~~~l~~----~~~v~i~~p~npt  157 (361)
T 3ftb_A           90 IIELSIS---LF---EKILIIVPSYAEYEINAKKHGVSVVFSYLDE--NMCIDYEDIISKIDD----VDSVIIGNPNNPN  157 (361)
T ss_dssp             HHHHHHT---TC---SEEEEEESCCTHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHTTT----CSEEEEETTBTTT
T ss_pred             HHHHHHH---Hc---CcEEEecCChHHHHHHHHHcCCeEEEeecCc--ccCCCHHHHHHhccC----CCEEEEeCCCCCC
Confidence            9988833   23   9999999999999999999999999999853  457788999998873    5577789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++++|+++|+++|+++|+||+|.++.++ ..   .+........+++++++||||.+|++|+|+||+  ++.+
T Consensus       158 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~---~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~--~~~~  231 (361)
T 3ftb_A          158 GGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PS---SSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYG--ITNN  231 (361)
T ss_dssp             TBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TT---SSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEE--EESC
T ss_pred             CCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cc---cchhHhcccCCCEEEEeeChhhcCCCCcceeEE--EeCC
Confidence            99999999999999999999999999999998875 11   122222345678999999999999999999999  6466


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++    +++.++....  .++++.++|.++...|+.
T Consensus       232 ~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~  261 (361)
T 3ftb_A          232 KE----IAAKIKAKQN--PWNINCFAEMAAINCLKD  261 (361)
T ss_dssp             HH----HHHHHHTTSC--TTCSCHHHHHHHHHTSSC
T ss_pred             HH----HHHHHHhhCC--CCCCCHHHHHHHHHHhcC
Confidence            77    6666665543  348899999999988875

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.97  E-value=6.9e-29  Score=233.09  Aligned_cols=230  Identities=17%  Similarity=0.191  Sum_probs=180.6

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .+.|+|+.+++.     ..+++.+.+++.+....  ..+| +..|..+||+++|+++..      ++++|++  |.|+++
T Consensus        16 ~~~i~l~~n~~~-----~~~~~~v~~a~~~~~~~--~~~y-~~~~~~~lr~~la~~~~~------~~~~i~~--t~G~~~   79 (337)
T 3p1t_A           16 AQAVCLAFNENP-----EAVEPRVQAAIAAAAAR--INRY-PFDAEPRVMRKLAEHFSC------PEDNLML--VRGIDE   79 (337)
T ss_dssp             CCCEECSSCCCC-----SCCCHHHHHHHHHHGGG--TTSC-CTTHHHHHHHHHHHHHTS------CGGGEEE--ESHHHH
T ss_pred             CCceEeeCCCCC-----CCCCHHHHHHHHHhhhh--hccC-CCCchHHHHHHHHHHhCc------CHHHEEE--eCCHHH
Confidence            378999988641     22467888887776543  2567 568999999999999732      3679988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++..   .+ +||+|+++.|+|..+...++..|++++.++++  +++++|++.+++.     .+++++++++|||||
T Consensus        80 ~l~~~~~---~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~-----~~~~~v~i~~p~npt  148 (337)
T 3p1t_A           80 CFDRISA---EF-SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLT--DDLLLDPNDLAQV-----SRDDCVVLANPSNPT  148 (337)
T ss_dssp             HHHHHHH---HS-TTSEEEEESSSCSHHHHHHTTSCCEEEEECBC--TTSSBCHHHHTTC-----CTTEEEEEESSCTTT
T ss_pred             HHHHHHH---hc-CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHhh-----cCCCEEEEeCCCCCC
Confidence            9988833   33 99999999999999999999999999999984  4688999998764     246788899999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++.+|   |+++++ +|+||+|.+|......    .    ....+++++++||||.||++|+|+||+  +++ 
T Consensus       149 G~~~~~~~l~~l---~~~~~~-~ivDea~~~~~~~~~~----~----~~~~~~~i~~~S~sK~~g~~G~r~G~~--~~~-  213 (337)
T 3p1t_A          149 GQALSAGELDQL---RQRAGK-LLIDETYVDYSSFRAR----G----LAYGENELVFRSFSKSYGLAGLRLGAL--FGP-  213 (337)
T ss_dssp             CCCCCHHHHHHH---HHHCSE-EEEECTTGGGSSCSSS----C----CCCBTTEEEEEESSSTTCCTTTCCEEE--ECC-
T ss_pred             CCCCCHHHHHHH---HHhCCc-EEEECCChhhcccccc----c----cccCCCEEEEeeCchhccCcchheEEE--EeC-
Confidence            999999988777   566776 5669999988754311    0    123468899999999999999999999  665 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      ++    +++.++...  ...+++.++|.++..+|+..+
T Consensus       214 ~~----~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~  245 (337)
T 3p1t_A          214 SE----LIAAMKRKQ--WFCNVGTLDLHALEAALDNDR  245 (337)
T ss_dssp             HH----HHHHHHTTS--CTTCSCHHHHHHHHHHHTCHH
T ss_pred             HH----HHHHHHhhc--CCCCCCHHHHHHHHHHhCCHH
Confidence            66    556665543  345788999999988877643

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.96  E-value=4e-29  Score=238.27  Aligned_cols=242  Identities=14%  Similarity=0.153  Sum_probs=185.1

Q ss_pred             cEEeeccccCCCCCCccccHHHHHHHHHHHcc--CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLER--GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .|||+.|.+. .    ..++.+.+++.+.+..  ....+|++..+ .++|+++++++...++..+++++|++  |.|+++
T Consensus        32 ~idl~~~~~~-~----~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~--~~G~~~  103 (369)
T 3cq5_A           32 DIRLNTNENP-Y----PPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWA--ANGSNE  103 (369)
T ss_dssp             SEECSSCCCC-S----CCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEE--ESHHHH
T ss_pred             ceeccCCCCC-C----CCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEE--CCChHH
Confidence            4999998862 1    1345666666554422  11267876666 79999999998766565667889988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      +++++.  ..++.+||+|+++.|+|..+...++..|++++.+|.+  +++++|++.+++.+++.  +++++++++|||||
T Consensus       104 al~~~~--~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~--~~~~v~~~~~~npt  177 (369)
T 3cq5_A          104 ILQQLL--QAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--ADFRIDMDVALEEIRAK--QPDIVFVTTPNNPT  177 (369)
T ss_dssp             HHHHHH--HHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC--TTSSCCHHHHHHHHHHH--CCSEEEEESSCTTT
T ss_pred             HHHHHH--HHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--cCCCCCHHHHHHHhhcc--CCCEEEEeCCCCCC
Confidence            998883  4446799999999999999999999999999999973  45789999999998741  34466679999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC-eEEEEEcCccccccccccceEEEEeeC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM-ELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~-~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      |.+++.+++.+|++   .+++++|+||+|.++.++   .   +...+.+..+ +++++.||||.+|++|+|+||+  +++
T Consensus       178 G~~~~~~~l~~l~~---~~~~~li~De~~~~~~~~---~---~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~--~~~  246 (369)
T 3cq5_A          178 GDVTSLDDVERIIN---VAPGIVIVDEAYAEFSPS---P---SATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYF--VAN  246 (369)
T ss_dssp             CCCCCHHHHHHHHH---HCSSEEEEECTTGGGCCS---C---CGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEE--EEC
T ss_pred             CCCCCHHHHHHHHH---hCCCEEEEECCchhhcCC---c---chHHHHhhCCCCEEEEEechHhcCCcccceEEE--EeC
Confidence            99999988888755   456999999999988753   1   1111223345 8999999999999999999999  776


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                       ++    +++.+.....  .++++.++|.++...|+.
T Consensus       247 -~~----~~~~l~~~~~--~~~~~~~~~~a~~~~l~~  276 (369)
T 3cq5_A          247 -PA----FIDAVMLVRL--PYHLSALSQAAAIVALRH  276 (369)
T ss_dssp             -TH----HHHHHHTTSC--TTCSCHHHHHHHHHHHHT
T ss_pred             -HH----HHHHHHHcCC--CCCCCHHHHHHHHHHhcC
Confidence             55    5666665443  346899999988887764

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.96  E-value=4.7e-30  Score=247.14  Aligned_cols=231  Identities=15%  Similarity=0.114  Sum_probs=169.8

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHH--cc-CCCCCCCCCcch-----HHHHHHHHHHHhcCCCCcccC-CcE
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLML--ER-GENKEYLPIEGL-----AAFNKVTAELLFGADNSVLKE-QRV  152 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~-~~~~~Y~~~~G~-----~~lr~aia~~l~~~~~~~~~~-~~i  152 (363)
                      .+++|+|+.|.+.     ...++.+.++.....  .. ....+|++..|.     ++||+++|+++. .++..+.+ ++|
T Consensus        21 ~~~~i~l~~g~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i   94 (391)
T 3bwn_A           21 SDFVVNLDHGDPT-----AYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYI   94 (391)
T ss_dssp             TTSCEECSSCCCG-----GGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEE
T ss_pred             CCCeeEcCCCCCC-----CCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeE
Confidence            3478999999862     122344554432211  11 123679999998     999999999986 55677766 589


Q ss_pred             EEEeccchhHHHHHHHHHHHHhCCCC----EEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCC
Q 017967          153 ATVQGLSGTGSLRLAAALIERYFPGA----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (363)
Q Consensus       153 ~~~~t~ggt~al~l~~~l~~~~~~gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (363)
                      ++  |+|+++++.++.  ..++.+||    +|++++|+|..|...++..|++++.++++.+   ++.        .   +
T Consensus        95 ~~--t~G~~~al~~~~--~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~---~l~--------~---~  156 (391)
T 3bwn_A           95 VV--GTGSTQLCQAAV--HALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAW---GFD--------K---K  156 (391)
T ss_dssp             EE--EEHHHHHHHHHH--HHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEEST---TCC--------C---C
T ss_pred             EE--eCChHHHHHHHH--HHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHH---HcC--------C---C
Confidence            88  999999999984  44467999    9999999999999999999999999988532   222        1   2


Q ss_pred             CcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcC--CeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc
Q 017967          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN--HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (363)
Q Consensus       229 ~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~--~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  306 (363)
                      +++++++++||||||.+++     +|++  ++++  ++||+||+|.+   +.    ..++   ....+++++++||||.|
T Consensus       157 ~~k~v~l~~p~NPtG~~~~-----~l~~--~~~~~~~~ii~De~y~~---~~----~~~l---~~~~~~~i~~~S~SK~~  219 (391)
T 3bwn_A          157 GPYIELVTSPNNPDGTIRE-----TVVN--RPDDDEAKVIHDFAYYW---PH----YTPI---TRRQDHDIMLFTFSKIT  219 (391)
T ss_dssp             SCEEEEEESSCTTTCCCCC-----CCC-------CCCEEEEECTTCS---TT----TSCC---CCCBCCSEEEEEHHHHH
T ss_pred             CCEEEEECCCCCCCchhHH-----HHHH--HhhcCCCEEEEeCCCCC---CC----CCcc---ccCCCCeEEEEechhhc
Confidence            4667778999999999997     3444  2255  99999999974   11    0111   11347899999999999


Q ss_pred             ccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          307 GLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      |++|+|+||+  ++++++    +++++.........+++.++|.++..+|+..
T Consensus       220 g~~GlRiG~~--~~~~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~  266 (391)
T 3bwn_A          220 GHAGSRIGWA--LVKDKE----VAKKMVEYIIVNSIGVSKESQVRTAKILNVL  266 (391)
T ss_dssp             SCGGGCEEEE--EECCHH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             CCCccceEEE--EecCHH----HHHHHHHHhcccccCCCHHHHHHHHHHHhCc
Confidence            9999999999  765577    5566665555455789999999999988764

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.96  E-value=7e-29  Score=234.67  Aligned_cols=231  Identities=13%  Similarity=0.123  Sum_probs=180.3

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|||+.|.+.     ..+++.+.+++.+....  ...|++..+ .++|+++|+++.      +++++|++  |+|+++
T Consensus        15 ~~~id~~~~~~~-----~~~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~~------~~~~~i~~--t~g~~~   78 (350)
T 3fkd_A           15 SEIVNFSTTVWT-----DGDKDHLEKHLVENLNC--IRHYPEPDA-GTLRQMLAKRNS------VDNNAILV--TNGPTA   78 (350)
T ss_dssp             -CCEECSCCSCC-----CSCCHHHHHHHHHTGGG--GGSCCCTTC-HHHHHHHHHHTT------CCGGGEEE--ESHHHH
T ss_pred             ccEEEccCCCCC-----CCCCHHHHHHHHHhHhH--HhcCCCCcH-HHHHHHHHHHhC------cCHHHEEE--cCCHHH
Confidence            479999998752     22467777777665522  267877766 899999999963      34689988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEec-ccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY-YDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++.++...   +. ||+|+++.|+|..+...++..|++++.+++ ++.  .++++           ++++++++++||||
T Consensus        79 al~~~~~~---l~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~~-----------~~~~~v~i~~p~np  141 (350)
T 3fkd_A           79 AFYQIAQA---FR-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI--GEADF-----------SNMDFCWLCNPNNP  141 (350)
T ss_dssp             HHHHHHHH---TT-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCG--GGSCC-----------TTCSEEEEESSCTT
T ss_pred             HHHHHHHH---HC-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcc--ccCcc-----------CCCCEEEEeCCCCC
Confidence            99988433   33 999999999999999999999999999998 432  23443           23556777999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.+++.+|++.|+++  ++|+||+|.++.+.+..  . .  ...+..+++++++||||.+|++|+|+||+  ++ 
T Consensus       142 tG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~--~-~--~~~~~~~~~i~~~S~sK~~~~~G~r~G~~--~~-  211 (350)
T 3fkd_A          142 DGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVI--R-P--ADIKGRKNLVMVYSFSHAYGIPGLRIGYI--VA-  211 (350)
T ss_dssp             TCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCC--C-G--GGGTTCSSEEEEEESHHHHSCGGGCCEEE--EC-
T ss_pred             cCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcch--h-h--HHhhcCCCEEEEecCchhccCcchheEeE--Ee-
Confidence            99999999999998888765  99999999999876421  1 1  22345688999999999999999999999  66 


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      +++    +++.+.....  ..+++.++|.++..+|+..++|
T Consensus       212 ~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~  246 (350)
T 3fkd_A          212 NKD----FMKRVAAFST--PWAVNALAIEAAKFILIHPAQF  246 (350)
T ss_dssp             CHH----HHHHHHTTCC--TTCSCHHHHHHHHHHHHCTTTT
T ss_pred             CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHHhCHHHH
Confidence            577    6666665543  4588999999999988877666

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.96  E-value=6.7e-29  Score=235.84  Aligned_cols=232  Identities=14%  Similarity=0.137  Sum_probs=178.4

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      +++|+|+.|++.     ..+++.+.+++.+.....  ....|++ .+..++|+++++++.      +++++|++  |+||
T Consensus        26 ~~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~~lr~~la~~~g------~~~~~i~~--t~g~   91 (360)
T 3hdo_A           26 ASWIKLNTNENP-----YPPSPEVVKAILEELGPDGAALRIYPS-ASSQKLREVAGELYG------FDPSWIIM--ANGS   91 (360)
T ss_dssp             TTSEECSSCCCS-----SCCCHHHHHHHHHHHTTTCGGGGSCCC-SSCHHHHHHHHHHHT------CCGGGEEE--ESSH
T ss_pred             cceeeccCCCCC-----CCCCHHHHHHHHHHHhcccchhhcCCC-CchHHHHHHHHHHhC------cCcceEEE--cCCH
Confidence            379999999862     224678888887776442  1256744 467999999999973      34689988  9999


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          161 TGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       161 t~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      +++++++  +..++.+||+|+++.|+|..+...++..|++++.+++++  ++.+  +.+++.+     +++++++++|||
T Consensus        92 ~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~--~~l~~~~-----~~~~v~i~~p~n  160 (360)
T 3hdo_A           92 DEVLNNL--IRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--DFRI--AGFPERY-----EGKVFFLTTPNA  160 (360)
T ss_dssp             HHHHHHH--HHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT--TSSB--TTCCSSB-----CSSEEEEESSCT
T ss_pred             HHHHHHH--HHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC--CCCH--HHHHhhc-----CCCEEEEeCCCC
Confidence            9999998  444567999999999999999999999999999999842  3444  4443321     233777899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEee
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~  320 (363)
                      |||.+++.+++.+|   |+++|+++|+||+|.+|....    ...   +.+..++++++.||||.+|++|+|+||+  ++
T Consensus       161 ptG~~~~~~~l~~l---~~~~~~~li~De~~~~~~~~~----~~~---~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~~  228 (360)
T 3hdo_A          161 PLGPSFPLEYIDEL---ARRCAGMLVLDETYAEFAESN----ALE---LVRRHENVVVTRTLSKSYSLAGMRIGLA--IA  228 (360)
T ss_dssp             TTCCCCCHHHHHHH---HHHBSSEEEEECTTGGGSSCC----CTH---HHHHCSSEEEEEESTTTTSCTTSCCEEE--EC
T ss_pred             CCCCCcCHHHHHHH---HHHCCCEEEEECChHhhCCcc----hhH---HhccCCCEEEEecchHhhcCCccceeeE--ee
Confidence            99999999887665   778999999999999874321    112   2345688999999999999999999999  66


Q ss_pred             CChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          321 SSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                       +++    +++.+.....  .++++.++|.++...|+.
T Consensus       229 -~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~  259 (360)
T 3hdo_A          229 -RPE----VIAALDKIRD--HYNLDRLAQAACVAALRD  259 (360)
T ss_dssp             -CHH----HHHHHHHHSC--SCCSCHHHHHHHHHHHHC
T ss_pred             -CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcC
Confidence             477    5666655543  357899999998887765

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.96  E-value=3.4e-29  Score=235.66  Aligned_cols=228  Identities=17%  Similarity=0.144  Sum_probs=176.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      +.|+|+.|.+.     ...++.+.+++.+.........|+. .+..++|+++++++...   .+++++|++  |.|++++
T Consensus        20 ~~i~l~~~~~~-----~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~lr~~la~~~~~~---~~~~~~v~~--~~G~~~a   88 (335)
T 1uu1_A           20 DKTYLALNENP-----FPFPEDLVDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTD---FLSKNNVSV--GNGADEI   88 (335)
T ss_dssp             CSEEESSCCCS-----SCCCHHHHHHHHHTCCGGGGGSCCC-SSCHHHHHHHHHHHTCS---SCCGGGEEE--ESSHHHH
T ss_pred             cceECCCCCCC-----CCCCHHHHHHHHHHhhhhhhhcCCC-CchHHHHHHHHHHcCCC---CCCHHHEEE--cCChHHH
Confidence            68999998852     1246778888776652222256744 57999999999998643   345789988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                      ++++..   .+  ||+|+++ |+|..+...++..|++++.+|++  +++++|++.+     +   +++++++++||||||
T Consensus        89 l~~~~~---~~--gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l-----~---~~~~v~l~~p~nptG  152 (335)
T 1uu1_A           89 IYVMML---MF--DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV-----G---EGDVVFIPNPNNPTG  152 (335)
T ss_dssp             HHHHHH---HS--SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC-----C---TTEEEEEESSCTTTC
T ss_pred             HHHHHH---Hh--CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc-----C---CCCEEEEeCCCCCCC
Confidence            998843   23  8999999 99999999999999999999883  3567888877     1   356777799999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      .+++.+++++|+++|   | ++|+||+|.++..++    ...   +.+..+++++++||||.+|++|+|+||+  ++ ++
T Consensus       153 ~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~~----~~~---~~~~~~~~i~~~s~sK~~g~~G~r~G~~--~~-~~  218 (335)
T 1uu1_A          153 HVFEREEIERILKTG---A-FVALDEAYYEFHGES----YVD---FLKKYENLAVIRTFSKAFSLAAQRVGYV--VA-SE  218 (335)
T ss_dssp             CCCCHHHHHHHHHTT---C-EEEEECTTHHHHCCC----CGG---GGGTCSSEEEEEESTTTTTCGGGCCEEE--EE-CH
T ss_pred             CCCCHHHHHHHHHhC---C-EEEEECcchhhcchh----HHH---HhhhCCCEEEEecchhhcCCcccCeEEE--Ee-CH
Confidence            999999999998877   7 899999999876431    111   1244578999999999999999999999  66 46


Q ss_pred             hHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          324 DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       324 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +    +++++.....  .++++.++|.++..+|+.
T Consensus       219 ~----~~~~l~~~~~--~~~~~~~~~~~~~~~l~~  247 (335)
T 1uu1_A          219 K----FIDAYNRVRL--PFNVSYVSQMFAKVALDH  247 (335)
T ss_dssp             H----HHHHHHHHSC--TTCSCHHHHHHHHHHHHT
T ss_pred             H----HHHHHHHhcC--CCCcCHHHHHHHHHHhCC
Confidence            6    5555555433  248899999999888765

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.95  E-value=3.1e-29  Score=244.28  Aligned_cols=231  Identities=14%  Similarity=0.066  Sum_probs=175.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHc-cCC-CCCCCCCc-c---hHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGE-NKEYLPIE-G---LAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-~~~-~~~Y~~~~-G---~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      ..|+|+.|+|.     ...++.+.+++.+.+. .+. ...|.+.. |   .++||+++|+++....+..+++++|++  |
T Consensus        57 ~~i~l~~g~~~-----~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~--t  129 (427)
T 2hox_A           57 CSADVASGDGL-----FLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF--G  129 (427)
T ss_dssp             CCEECCSCCCG-----GGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE--E
T ss_pred             ceEEecCcCCC-----CCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEE--e
Confidence            78999999862     2234566666655542 222 13498888 9   999999999999876666677899988  9


Q ss_pred             cchhHHHHHHHHHHHH--------hCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          158 LSGTGSLRLAAALIER--------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~--------~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      .|+++++.++  +..+        +.|||.|+++.|+|+.|...++..|++++.+        .+|++.|++.++   ++
T Consensus       130 ~G~~~al~~~--~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~---~~  196 (427)
T 2hox_A          130 VGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW--------AGNAANYVNVSN---PE  196 (427)
T ss_dssp             SHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEE--------EEEGGGGTTCSC---GG
T ss_pred             CCHHHHHHHH--HHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeee--------cCCHHHHHHhhc---CC
Confidence            9999999998  4455        6799999999999999999999999998754        356777877665   24


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      +++++++|||||||.+++ +.       ++  ++..+.|+.|.+    +.    .++..+ . .+++|+++||||.+|++
T Consensus       197 ~k~v~l~~p~NPtG~~~~-~~-------l~--~~~~i~d~~~~~----~~----~s~~~~-~-~~~~i~~~S~SK~~g~~  256 (427)
T 2hox_A          197 QYIEMVTSPNNPEGLLRH-AV-------IK--GCKSIYDMVYYW----PH----YTPIKY-K-ADEDILLFTMSKFTGHS  256 (427)
T ss_dssp             GEEEEEESSCTTTCCCCC-CS-------ST--TCEEEEECTTCS----TT----TSCCCS-C-BCCSEEEEEHHHHTSCG
T ss_pred             ceEEEEcCCCCCcccccH-HH-------Hc--CCCEEEeecccC----CC----CCcccc-C-CCceEEEEeChhcCCCC
Confidence            677888999999999999 42       22  566788888753    11    111111 1 47899999999999999


Q ss_pred             cccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       310 G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      |+|+||+  ++++++    +++++.........+++.++|.++..+|++.+
T Consensus       257 G~RiG~~--~~~~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~  301 (427)
T 2hox_A          257 GSRFGWA--LIKDES----VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVV  301 (427)
T ss_dssp             GGCCEEE--EECCHH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH
T ss_pred             CceEEEE--EECCHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHhhcch
Confidence            9999999  776677    56666666555567899999999988887643

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.94  E-value=1.1e-25  Score=217.64  Aligned_cols=228  Identities=12%  Similarity=0.029  Sum_probs=176.6

Q ss_pred             EEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchH---HHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLA---AFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        86 i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~---~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++++|.| +...++++.+.+.++...+......+.|+. .|.+   ++++++++++..        +++++  +.||++
T Consensus        21 ~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g~--------~~~i~--~~~g~~   88 (404)
T 1e5e_A           21 QFGAAIPP-IYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEKT--------EACVA--TSSGMG   88 (404)
T ss_dssp             TTCCSSCC-CCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHH
T ss_pred             CCCCcCCC-CcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhCC--------CcEEE--eCChHH
Confidence            46888887 667777788888777654332223366866 5666   899999999732        35655  788899


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p  238 (363)
                      ++.++  +..++.+||.|+++.|+|..+..    .++..|++++.++.+       |++.+++.++   ++++++++++|
T Consensus        89 ai~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~---~~t~~v~l~~p  156 (404)
T 1e5e_A           89 AIAAT--VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMK---PNTKIVYFETP  156 (404)
T ss_dssp             HHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCC---TTEEEEEEESS
T ss_pred             HHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcC---CCCcEEEEECC
Confidence            98888  44457899999999999999988    678899999999862       7789998886   35778889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHh-cCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccc-eEE
Q 017967          239 HNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAM  316 (363)
Q Consensus       239 ~NPTG~~~s~~~~~~i~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i  316 (363)
                      |||||.+++   +++|+++|++ +|+++|+||+|..+.+..      +.    + .+.++++.|+||.|+++|+|+ ||+
T Consensus       157 ~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~------~~----~-~~~di~~~S~sK~~~~~g~ri~G~~  222 (404)
T 1e5e_A          157 ANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN------PV----D-FGVDVVVHSATKYINGHTDVVAGLI  222 (404)
T ss_dssp             CTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC------GG----G-GTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred             CCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC------cc----c-cCCEEEEEcCccccCCCCCCeEEEE
Confidence            999999996   7788888999 999999999999987641      11    1 257899999999999999998 999


Q ss_pred             EEeeCChhHHHHHHH-HHHhhhccc-cCCCchHHHHHHhccccc
Q 017967          317 NVVCSSSDLAARVKS-QLKRLARPM-YSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       317 ~~v~~~~~~~~~~~~-~l~~~~~~~-~~~~s~~~q~~~~~~l~~  358 (363)
                        +++ ++    +++ ++....... ..+.+.+.|.++...|+.
T Consensus       223 --~~~-~~----~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~  259 (404)
T 1e5e_A          223 --CGK-AD----LLQQIRMVGIKDITGSVISPHDAWLITRGLST  259 (404)
T ss_dssp             --EEC-HH----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT
T ss_pred             --EEC-HH----HHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhH
Confidence              776 44    344 666655444 457888888888776654

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.93  E-value=5.6e-25  Score=211.43  Aligned_cols=239  Identities=15%  Similarity=0.047  Sum_probs=170.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-C-CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      ++|+|+.|.|.   + ..+++.+.+++.+.+.. . ....|....|..++++++++++....+.    +++++  |.||+
T Consensus        44 ~~idl~~~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~--~~ggt  113 (398)
T 3a2b_A           44 RVLMFGSNSYL---G-LTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAIL--FSTGF  113 (398)
T ss_dssp             EEEECSCSCTT---C-GGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEE--ESSHH
T ss_pred             eEEEeeccccc---C-CCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEE--ECCHH
Confidence            68999998752   1 11456677776655432 1 1234555667777777777776554442    57877  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCC-CcEEEEEcCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG-GSFILLHGCAHN  240 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~i~~p~N  240 (363)
                      +++.++  +..++.+||.|++++|+|..+...++..|.+++.++.       +|++.+++.+++..+ +++++++++|||
T Consensus       114 ~a~~~~--~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~n  184 (398)
T 3a2b_A          114 QSNLGP--LSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIFS  184 (398)
T ss_dssp             HHHHHH--HHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBCT
T ss_pred             HHHHHH--HHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCCC
Confidence            999988  4444679999999999999999999999999999875       589999999985322 567888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCe-EEEEEcCccccccccccceEEEEe
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME-LLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~-vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      |||.+++   +++|+++|+++|+++|+||+|..+.++..   ..++....+..++ +++++||||.++++|   ||+  +
T Consensus       185 ptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~--~  253 (398)
T 3a2b_A          185 MEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK---GAGTASHFGLNDDVDLIMGTFSKSLASLG---GFV--A  253 (398)
T ss_dssp             TTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG---GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEE--E
T ss_pred             CCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCC---CCchHhhcCCCcCCeEEEecccccccCCC---cEE--E
Confidence            9999987   67788889999999999999998876421   1122222222235 699999999999878   999  6


Q ss_pred             eCChhHHHHHHHHHHhh-hccccCCCchHHHHH-Hhcccc
Q 017967          320 CSSSDLAARVKSQLKRL-ARPMYSNPPPMLLGI-QLSSMN  357 (363)
Q Consensus       320 ~~~~~~~~~~~~~l~~~-~~~~~~~~s~~~q~~-~~~~l~  357 (363)
                      ++ ++    +++.+... ......+.+.+.|.+ +...|+
T Consensus       254 ~~-~~----~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~  288 (398)
T 3a2b_A          254 GD-AD----VIDFLKHNARSVMFSASMTPASVASTLKALE  288 (398)
T ss_dssp             EC-HH----HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHH
T ss_pred             eC-HH----HHHHHHHhcccceecCCCCHHHHHHHHHHHH
Confidence            65 66    44445443 222344556666663 444444

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.92  E-value=5e-24  Score=205.29  Aligned_cols=232  Identities=13%  Similarity=0.082  Sum_probs=170.5

Q ss_pred             EEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCC--CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           86 LNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        86 i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ..+++|.+ +...++++.+.+.+++.........+.|.  +..+..++++++++++..        ++.++  +.+|++|
T Consensus        23 ~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--------~~~i~--~~sG~~a   91 (398)
T 2rfv_A           23 STGALSTP-IFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG--------EAGLA--TASGISA   91 (398)
T ss_dssp             TTCCSSCC-CCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHH
T ss_pred             CCCCcCCC-CcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHH
Confidence            36788886 66777888888887765322211123443  566788999999998632        24444  5677899


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~  239 (363)
                      +.++  +..++.+||+|+++.|+|..+...+    +..|++++.++..       |++.+++.++   ++++++++++||
T Consensus        92 ~~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~---~~~~~v~~~~~~  159 (398)
T 2rfv_A           92 ITTT--LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-------KPEEIRAAMR---PETKVVYIETPA  159 (398)
T ss_dssp             HHHH--HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-------SHHHHHHHCC---TTEEEEEEESSB
T ss_pred             HHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHhcC---CCCeEEEEECCC
Confidence            8888  4444679999999999999988776    7889999999862       7899998886   357788889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccc-eEEEE
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNV  318 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i~~  318 (363)
                      ||||.+++   +++|.++|+++|+++|+||+|..+.+..      +.    . ....+++.|+||.++.+|+|+ ||+  
T Consensus       160 nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~------~~----~-~~~di~~~s~sK~~~~~g~~~~G~~--  223 (398)
T 2rfv_A          160 NPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ------PL----Q-LGADIVVHSVTKYINGHGDVIGGII--  223 (398)
T ss_dssp             TTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC------GG----G-GTCSEEEEETTTTTTCSSCCCCEEE--
T ss_pred             CCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC------ch----h-hCCcEEEEeCcccccCCCCceEEEE--
Confidence            99999996   7778888999999999999999776542      11    1 146789999999999899999 999  


Q ss_pred             eeCChhHHHHHHHHHHhhhccc-cCCCchHHHHHHhccccccc
Q 017967          319 VCSSSDLAARVKSQLKRLARPM-YSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       319 v~~~~~~~~~~~~~l~~~~~~~-~~~~s~~~q~~~~~~l~~~~  360 (363)
                      +++ ++.++   +.++...... ..+.+.+.|.++...|+..+
T Consensus       224 ~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  262 (398)
T 2rfv_A          224 VGK-QEFID---QARFVGLKDITGGCMSPFNAWLTLRGVKTLG  262 (398)
T ss_dssp             EEC-HHHHH---HHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH
T ss_pred             EEC-HHHHH---HHHHHHHHhCCCCCCCHHHHHHHHhhhhhHH
Confidence            766 55322   1344333333 45778888888877776543

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.91  E-value=3.1e-23  Score=198.18  Aligned_cols=235  Identities=15%  Similarity=0.092  Sum_probs=164.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-CC-----CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GE-----NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~-----~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      .++||+.|.+.   + ...++.+.+++.+.+.. ..     .+.|+...+..++|+++++++. .      ++.++   +
T Consensus        40 ~~id~~~~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-~------~~~i~---~  105 (384)
T 1bs0_A           40 QYLNFSSNDYL---G-LSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG-Y------SRALL---F  105 (384)
T ss_dssp             EEEECSCCCTT---S-GGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT-C------SEEEE---E
T ss_pred             eEEEeeccCcc---C-CCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC-C------CcEEE---e
Confidence            68999988641   1 12456777776665532 11     1223456789999999999972 1      24444   4


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcC
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~  237 (363)
                      .+|++++.++  +..+..+||.|+++.|+|..+...++..|.+++.+|.       .|++.+++.+++.+++++++++++
T Consensus       106 ~sGt~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~~~  176 (384)
T 1bs0_A          106 ISGFAANQAV--IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEG  176 (384)
T ss_dssp             SCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEES
T ss_pred             CCcHHHHHHH--HHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEEeC
Confidence            5558998887  3444679999999999999999999999999998874       478999999986433467888899


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       238 p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                      ||||||.+++   +++|+++|+++|+++|+||+|..+.++.   .........+. ...++++||||.++.+|   ||+ 
T Consensus       177 ~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~-~~di~~~s~sK~~~~~G---G~~-  245 (384)
T 1bs0_A          177 VFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGE---QGRGSCWLQKV-KPELLVVTFGKGFGVSG---AAV-  245 (384)
T ss_dssp             BCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSG---GGCCHHHHTTC-CCSEEEEESSSTTSSCC---EEE-
T ss_pred             CCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecC---CCCchHHhcCC-CCcEEEeeccchhhccC---cEE-
Confidence            9999999998   5678888999999999999998765431   01111122222 23489999999999777   999 


Q ss_pred             EeeCChhHHHHHHHHHHhhhcc--ccCCCchHHHHHHhccccc
Q 017967          318 VVCSSSDLAARVKSQLKRLARP--MYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       318 ~v~~~~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~~~~~l~~  358 (363)
                       +++ ++.    ++.+......  ...+++.+.|.++...|+.
T Consensus       246 -~~~-~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~  282 (384)
T 1bs0_A          246 -LCS-STV----ADYLLQFARHLIYSTSMPPAQAQALRASLAV  282 (384)
T ss_dssp             -EEC-HHH----HHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH
T ss_pred             -EeC-HHH----HHHHHHhchhhhcCCCCCHHHHHHHHHHHHH
Confidence             665 764    4444432211  1225778888776655543

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.91  E-value=1.2e-23  Score=199.70  Aligned_cols=205  Identities=13%  Similarity=0.009  Sum_probs=152.4

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccC--------CCCCCCCCcchHHHHHH-HHHHHhcCCCCcccCCcEE
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--------ENKEYLPIEGLAAFNKV-TAELLFGADNSVLKEQRVA  153 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--------~~~~Y~~~~G~~~lr~a-ia~~l~~~~~~~~~~~~i~  153 (363)
                      ++.+.|..|.+.     ..+++.+.+++.+.....        ....|.+..+..+++++ +++++..       + +|+
T Consensus         7 ~~~i~ld~~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~-------~-~v~   73 (371)
T 2e7j_A            7 KDFINIDPLQTG-----GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC-------D-VAR   73 (371)
T ss_dssp             -CCEECCHHHHT-----CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS-------S-EEE
T ss_pred             CCcEEecccccC-----CCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC-------C-EEE
Confidence            468888887642     234677777776655321        11345577899999999 9999632       2 777


Q ss_pred             EEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEe--cccCCCCCCCHHHHHHHHHcCC--CC
Q 017967          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYR--YYDPKTVGLDFEGMIADIKAAP--GG  229 (363)
Q Consensus       154 ~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~--~~~~~~~~~d~~~l~~~l~~~~--~~  229 (363)
                      +  |.|+++|+.++.  ..++.+||+|++++|+|..+...++..|++++.++  .+  .++++|++.+++.+++..  ++
T Consensus        74 ~--~~g~t~a~~~~~--~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~~~  147 (371)
T 2e7j_A           74 V--TNGAREAKFAVM--HSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDY--PDYAITPENFAQTIEETKKRGE  147 (371)
T ss_dssp             E--ESSHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCT--TTCCCCHHHHHHHHHHHTTTSC
T ss_pred             E--eCChHHHHHHHH--HHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccC--CCCCcCHHHHHHHHHhhcccCC
Confidence            7  999999999884  44467999999999999999999999999999999  63  357899999999997421  24


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ++++++++||||||.+++.   ++|.++|+++|+++|+||+|..+...   .   ++..+    +..+++.||||.++. 
T Consensus       148 ~~~v~~~~~~nptG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~---~---~~~~~----~~di~~~s~sK~~~~-  213 (371)
T 2e7j_A          148 VVLALITYPDGNYGNLPDV---KKIAKVCSEYDVPLLVNGAYAIGRMP---V---SLKEI----GADFIVGSGHKSMAA-  213 (371)
T ss_dssp             EEEEEEESSCTTTCCCCCH---HHHHHHHHTTTCCEEEECTTTBTTBC---C---CHHHH----TCSEEEEEHHHHSSC-
T ss_pred             eEEEEEECCCCCCcccCCH---HHHHHHHHHcCCeEEEECccccCCCC---C---Chhhc----CCCEEEecCCcCCCC-
Confidence            6788899999999999985   67778899999999999999886542   1   12222    234889999999984 


Q ss_pred             cccceEEEEeeCC
Q 017967          310 AERIGAMNVVCSS  322 (363)
Q Consensus       310 G~RvG~i~~v~~~  322 (363)
                      |.|+||+  ++++
T Consensus       214 ~~~~G~~--~~~~  224 (371)
T 2e7j_A          214 SGPIGVM--GMKE  224 (371)
T ss_dssp             CSSCEEE--EECT
T ss_pred             CCCcEEE--EEec
Confidence            5699999  7763

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.91  E-value=1.8e-23  Score=201.70  Aligned_cols=212  Identities=11%  Similarity=0.037  Sum_probs=159.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC------CCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG------ENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.|+|+.|.+.      ..++.+.+++.+.....      ....|++  ..+..++|+++++++...     +++++++ 
T Consensus        28 ~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~-   95 (420)
T 1t3i_A           28 PLVYLDNAATS------QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR-----SPREIVY-   95 (420)
T ss_dssp             ECEECBTTTCC------CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE-
T ss_pred             ceEEecCCccC------CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE-
Confidence            47999998862      24567777776655321      1134543  467899999999996442     3578988 


Q ss_pred             eccchhHHHHHHHHHHH--HhCCCCEEEEcCCCCcc----hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          156 QGLSGTGSLRLAAALIE--RYFPGAKVLISSPTWGN----HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~--~~~~gd~Vlv~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                       |.||++|++++...+.  .+.+||+|+++.|+|..    +...++..|++++.++.+  +++.+|++.++++++   ++
T Consensus        96 -~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~---~~  169 (420)
T 1t3i_A           96 -TRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLS---EK  169 (420)
T ss_dssp             -ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCC---TT
T ss_pred             -cCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhC---CC
Confidence             9999999999843321  05799999999999998    566777889999999984  457799999999886   35


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ++++++++|+||||.+++   +++|.++|+++|+++|+|++|......   .   ....+    ...+++.||||.+|.+
T Consensus       170 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~---~---~~~~~----~~di~~~s~sK~~~~~  236 (420)
T 1t3i_A          170 TKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP---L---DVQLI----DCDWLVASGHKMCAPT  236 (420)
T ss_dssp             EEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---C---CHHHH----TCSEEEEEGGGTTSCT
T ss_pred             ceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc---C---chhhc----CCCEEEEehhhhcCCC
Confidence            678888999999999998   677888899999999999999865432   0   12222    3568899999999877


Q ss_pred             cccceEEEEeeCChhHHHHHHHHHHh
Q 017967          310 AERIGAMNVVCSSSDLAARVKSQLKR  335 (363)
Q Consensus       310 G~RvG~i~~v~~~~~~~~~~~~~l~~  335 (363)
                      |  +||+  +++ ++    +++.+..
T Consensus       237 g--~G~~--~~~-~~----~~~~~~~  253 (420)
T 1t3i_A          237 G--IGFL--YGK-EE----ILEAMPP  253 (420)
T ss_dssp             T--CEEE--EEC-HH----HHHHSCC
T ss_pred             c--eEEE--EEc-hH----HHhhcCc
Confidence            7  8999  665 66    4554443

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.90  E-value=5.9e-24  Score=202.46  Aligned_cols=226  Identities=10%  Similarity=-0.017  Sum_probs=160.7

Q ss_pred             ccccHHHHHHHHHHHccCC-------CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHH
Q 017967          100 PYVLDVVKKAENLMLERGE-------NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE  172 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~-------~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~  172 (363)
                      ..+++.+.+++.+......       ...|....+..++++++++++.      +++++|++  |+||++++.++...+.
T Consensus        11 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~--~~g~t~a~~~~~~~~~   82 (384)
T 1eg5_A           11 TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPSEIFF--TSCATESINWILKTVA   82 (384)
T ss_dssp             CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------SCGGGEEE--ESCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcC------CCCCeEEE--ECCHHHHHHHHHHhhh
Confidence            4567788888777664311       0112334567899999999973      23578988  9999999999854432


Q ss_pred             H--hCCCCEEEEcCCCCcchHHHH---hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCC
Q 017967          173 R--YFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT  247 (363)
Q Consensus       173 ~--~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s  247 (363)
                      .  ..+||+|+++.|+|..+...+   +..|++++.++.+  .++.+|++.|++.+++   +++++++++|+||||.+++
T Consensus        83 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~  157 (384)
T 1eg5_A           83 ETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVVKLEELEKLVDE---DTFLVSIMAANNEVGTIQP  157 (384)
T ss_dssp             HHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCBCHHHHHHHCCT---TEEEEEEESBCTTTCBBCC
T ss_pred             hhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccC--CCCccCHHHHHHHhCC---CCeEEEEECCCCCcccccC
Confidence            1  169999999999999886655   6789999999984  3577999999998863   5678888999999999999


Q ss_pred             HHHHHHHHHHHHhcC--CeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhH
Q 017967          248 PEQWEKIADVIQEKN--HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL  325 (363)
Q Consensus       248 ~~~~~~i~~~~~~~~--~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~  325 (363)
                         +++|.++|+++|  +++|+||+|. +....  .   .+    ......+++.|+||.+|++|  +||+  ++++ +.
T Consensus       158 ---~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~---~~----~~~~~di~~~s~sK~~g~~G--~G~~--~~~~-~~  219 (384)
T 1eg5_A          158 ---VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--F---SL----EKLEVDYASFSAHKFHGPKG--VGIT--YIRK-GV  219 (384)
T ss_dssp             ---HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--C---CC----TTTCCSEEEEEGGGGTSCTT--CEEE--EECT-TS
T ss_pred             ---HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--c---Cc----hhcCCCEEEecHHHhcCCCc--eEEE--EEcC-CC
Confidence               466777899999  9999999987 32111  1   11    11246788999999999888  7999  7763 31


Q ss_pred             HHHHHHHHHhh---hccccCCCchHHHHHHhccccc
Q 017967          326 AARVKSQLKRL---ARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       326 ~~~~~~~l~~~---~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                        ++...+...   ......+++.+.|.++...|+.
T Consensus       220 --~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  253 (384)
T 1eg5_A          220 --PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI  253 (384)
T ss_dssp             --CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH
T ss_pred             --ccccccccCcccccccCCCCChHHHHHHHHHHHH
Confidence              011111110   0123447888888887776654

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.90  E-value=5.6e-23  Score=196.00  Aligned_cols=232  Identities=15%  Similarity=0.045  Sum_probs=163.5

Q ss_pred             CCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCC
Q 017967           97 ELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP  176 (363)
Q Consensus        97 ~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~  176 (363)
                      .++..+++.+.+++.+..    ...|++  ...++++++++++....+.. +++++++  |.||++|+.++  +..++.+
T Consensus        26 ~~~~~~~~~v~~a~~~~~----~~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~v~~--~~g~t~a~~~~--~~~l~~~   94 (386)
T 2dr1_A           26 AGPVACFPEVLEIMKVQM----FSHRSK--EYRKVHMDTVERLREFLEVE-KGEVLLV--PSSGTGIMEAS--IRNGVSK   94 (386)
T ss_dssp             SSSCCCCHHHHHHTTSCC----CCTTSH--HHHHHHHHHHHHHHHHHTCS-SSEEEEE--SSCHHHHHHHH--HHHHSCT
T ss_pred             CCCcCCcHHHHHHHhccc----ccccCH--HHHHHHHHHHHHHHHHhCCC-CCcEEEE--eCChHHHHHHH--HHHhhcC
Confidence            344556777777754322    134643  23566666666655444443 3567877  99999999988  4444679


Q ss_pred             CCEEEEcCCCCcc--hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHH
Q 017967          177 GAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (363)
Q Consensus       177 gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i  254 (363)
                      ||+|++++|+|..  +...++..|++++.++.+  .++.+|++.|++++++.+ +++++++++|+||||.+.+   +++|
T Consensus        95 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~nptG~~~~---l~~i  168 (386)
T 2dr1_A           95 GGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYE--PGKAVKPEDLDDALRKNP-DVEAVTITYNETSTGVLNP---LPEL  168 (386)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHCT-TCCEEEEESEETTTTEECC---HHHH
T ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCceEEEecC--CCCCCCHHHHHHHHhcCC-CCcEEEEEeecCCcchhCC---HHHH
Confidence            9999999999988  888889999999999984  356799999999996422 4567777899999999986   5778


Q ss_pred             HHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHH---
Q 017967          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS---  331 (363)
Q Consensus       255 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~---  331 (363)
                      .++|+++|+++|+||+|..+...-      ++    .....++++.||||.++.+ .++||+  +++ ++.++++..   
T Consensus       169 ~~l~~~~~~~li~D~a~~~~~~~~------~~----~~~~~di~~~s~sK~~~~~-~g~G~~--~~~-~~~~~~~~~~~~  234 (386)
T 2dr1_A          169 AKVAKEHDKLVFVDAVSAMGGADI------KF----DKWGLDVVFSSSQKAFGVP-PGLAIG--AFS-ERFLEIAEKMPE  234 (386)
T ss_dssp             HHHHHHTTCEEEEECTTTBTTBCC------CT----TTTTCSEEEEETTSTTCCC-SSCEEE--EEC-HHHHHHHTTCTT
T ss_pred             HHHHHHcCCeEEEEccccccCccc------cc----cccCCcEEEEeccccccCC-CceEEE--EEC-HHHHHHHhcCCC
Confidence            888999999999999998765421      11    1224679999999999865 248999  765 564443310   


Q ss_pred             ---------HHHhh--hccccCCCchHHHHHHhcccccc
Q 017967          332 ---------QLKRL--ARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       332 ---------~l~~~--~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                               .+...  ......+++.+.|.++...|+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  273 (386)
T 2dr1_A          235 RGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRII  273 (386)
T ss_dssp             CCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHH
T ss_pred             CceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence                     11222  12334578888888887766543

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.90  E-value=5.3e-23  Score=197.20  Aligned_cols=236  Identities=13%  Similarity=0.084  Sum_probs=160.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc------CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~------~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      .+|||+.|.|..    ...++.+.+++.+.+..      .....|+...+..++++++++++..       ++.+++   
T Consensus        44 ~~id~~~~~~~g----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~~~i~~---  109 (399)
T 3tqx_A           44 EVLNFCANNYLG----LADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGT-------DDTILY---  109 (399)
T ss_dssp             EEEECSSCCTTS----CTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTC-------SEEEEE---
T ss_pred             eEEEeeccCccc----ccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCC-------CcEEEE---
Confidence            689999886531    12345566655554422      1112234556689999999999732       245544   


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCC---CcEEEE
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFILL  234 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~---~~~~~~  234 (363)
                      .+|++++.++  +...+.+||.|+++.|+|..+...++..|.+++.++.       .|++.+++.+++...   ++++++
T Consensus       110 ~sGt~a~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~  180 (399)
T 3tqx_A          110 SSCFDANGGL--FETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIA  180 (399)
T ss_dssp             SCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEE
T ss_pred             CchHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEE
Confidence            4567888776  4455779999999999999999999999999999885       467788888875222   678888


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh-cCCeEEEEEcCccccccccccc
Q 017967          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERI  313 (363)
Q Consensus       235 i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~~l~G~Rv  313 (363)
                      +++||||||.+++   +++|+++|+++|+++|+||+|....++..   ..+.....+ .....++++||||.++  |++.
T Consensus       181 ~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~di~~~s~sK~~~--g~~g  252 (399)
T 3tqx_A          181 TDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGEN---GRGTPEYCGVADRVDILTGTLGKALG--GASG  252 (399)
T ss_dssp             EESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT---SCCHHHHHTCTTCCSEEEEESSSSSC--SSCC
T ss_pred             EeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC---CCchHHhhCCCCCCcEEEecchHhcc--cCce
Confidence            9999999999998   67888889999999999999963222211   112222222 1355699999999998  5566


Q ss_pred             eEEEEeeCChhHHHHHHHHHHhhhcc--ccCCCchHHHHHHhcccc
Q 017967          314 GAMNVVCSSSDLAARVKSQLKRLARP--MYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       314 G~i~~v~~~~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~~~~~l~  357 (363)
                      ||+  +++ ++    +++.+......  .....+.+.+.++...++
T Consensus       253 G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  291 (399)
T 3tqx_A          253 GYT--SGH-KE----IIEWLRNRSRPYLFSNTVAPVIVATSLKVLE  291 (399)
T ss_dssp             EEE--EEC-HH----HHHHHHHHCHHHHSSCCCCHHHHHHHHHHHH
T ss_pred             EEE--EcC-HH----HHHHHHHhCcceeccCCCcHHHHHHHHHHHH
Confidence            999  665 66    44444433221  123566666666655544

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.90  E-value=1.6e-23  Score=200.78  Aligned_cols=222  Identities=16%  Similarity=0.098  Sum_probs=159.8

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchhHHHHHHHHHHHHhCCCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFPGA  178 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~al~l~~~l~~~~~~gd  178 (363)
                      ..+++.+.+++.+...    ..|.+  ...++++++++++....+.  +++ ++++  |.||+++++++  +...+.+||
T Consensus        43 ~~~~~~v~~a~~~~~~----~~~~~--~~~~~~~~~~~~la~~~g~--~~~~~v~~--t~g~t~al~~~--~~~~~~~gd  110 (393)
T 1vjo_A           43 SNAHPSVLQAMNVSPV----GHLDP--AFLALMDEIQSLLRYVWQT--ENPLTIAV--SGTGTAAMEAT--IANAVEPGD  110 (393)
T ss_dssp             CCCCHHHHHHHSSCCC----CTTSH--HHHHHHHHHHHHHHHHHTC--CCSCEEEE--SSCHHHHHHHH--HHHHCCTTC
T ss_pred             CCCCHHHHHHHhcccc----cccCH--HHHHHHHHHHHHHHHHhCC--CCCcEEEE--eCchHHHHHHH--HHhccCCCC
Confidence            4456777777644321    24643  2445666666655444333  356 8888  99999999988  444467999


Q ss_pred             EEEEcCCCCcc--hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHH
Q 017967          179 KVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (363)
Q Consensus       179 ~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~  256 (363)
                      +|++++|+|..  +...++..|++++.++++  .++.+|++.|++.+++.  +++++++++||||||.+++   +++|++
T Consensus       111 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---l~~i~~  183 (393)
T 1vjo_A          111 VVLIGVAGYFGNRLVDMAGRYGADVRTISKP--WGEVFSLEELRTALETH--RPAILALVHAETSTGARQP---LEGVGE  183 (393)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHH
T ss_pred             EEEEEcCChhHHHHHHHHHHcCCceEEEecC--CCCCCCHHHHHHHHhhC--CceEEEEeccCCCcceecc---HHHHHH
Confidence            99999999999  888999999999999984  35679999999999741  3457788999999999987   667888


Q ss_pred             HHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhh
Q 017967          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL  336 (363)
Q Consensus       257 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~  336 (363)
                      +|+++|+++|+||+|. +....  .   .    .......+++.|+||.++.+| |+||+  +++ ++    +++.+...
T Consensus       184 l~~~~~~~li~Dea~~-~g~~~--~---~----~~~~~~di~~~s~sK~l~~~~-~~G~l--~~~-~~----~~~~~~~~  245 (393)
T 1vjo_A          184 LCREFGTLLLVDTVTS-LGGVP--I---F----LDAWGVDLAYSCSQKGLGCSP-GASPF--TMS-SR----AIEKLQRR  245 (393)
T ss_dssp             HHHHHTCEEEEECTTT-TTTSC--C---C----TTTTTCSEEECCSSSTTCSCS-SCEEE--EEC-HH----HHHHHHTC
T ss_pred             HHHHcCCEEEEECCcc-ccCcC--C---c----ccccCccEEEEcCcccccCCC-ceEEE--EEC-HH----HHHHHhcc
Confidence            8999999999999998 32211  1   1    122346788999999998777 99999  765 55    44444321


Q ss_pred             ----h---------------ccccC-CCchHHHHHHhccccc
Q 017967          337 ----A---------------RPMYS-NPPPMLLGIQLSSMNG  358 (363)
Q Consensus       337 ----~---------------~~~~~-~~s~~~q~~~~~~l~~  358 (363)
                          .               ..... +++.++|.++...|+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~  287 (393)
T 1vjo_A          246 RTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRL  287 (393)
T ss_dssp             SSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHH
T ss_pred             CCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHH
Confidence                0               01122 7788888888776654

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.89  E-value=9.5e-23  Score=195.56  Aligned_cols=211  Identities=13%  Similarity=0.043  Sum_probs=156.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCC------CCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKE------YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~------Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+.|+.+.+.      ..++.+.+++.+.+....  ...      |.+..+..++|+++++++...     ++++|++ 
T Consensus        23 ~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~-   90 (406)
T 1kmj_A           23 PLAYLDSAASA------QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINAR-----SAEELVF-   90 (406)
T ss_dssp             ECEECCTTTCC------CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE-
T ss_pred             ceEEecCCccC------CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE-
Confidence            57899888751      245677777766653210  011      234567889999999996431     3578988 


Q ss_pred             eccchhHHHHHHHHHHHH--hCCCCEEEEcCCCCcch----HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          156 QGLSGTGSLRLAAALIER--YFPGAKVLISSPTWGNH----KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~--~~~gd~Vlv~~P~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                       |.|+++|++++...+..  +.+||+|+++.|+|...    ...++..|++++.++.+  .++.+|++.+++.++   ++
T Consensus        91 -~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~l~---~~  164 (406)
T 1kmj_A           91 -VRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPTLFD---EK  164 (406)
T ss_dssp             -ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTSCBCGGGHHHHCC---TT
T ss_pred             -eCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecC--CCCCcCHHHHHHHhc---cC
Confidence             99999999998433211  57999999999998654    44567789999999984  357789999999886   35


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ++++++++|+||||.+++   +++|.++|+++|+++|+||+|......   .   .+..    ....+++.||||.+|.+
T Consensus       165 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~---~---~~~~----~~~d~~~~s~~K~~g~~  231 (406)
T 1kmj_A          165 TRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP---V---DVQA----LDCDFYVFSGHKLYGPT  231 (406)
T ss_dssp             EEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---C---CHHH----HTCSEEEEEGGGTTSCT
T ss_pred             CeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCC---C---cccc----cCCCEEEEEchhccCCC
Confidence            678888999999999998   677888899999999999999864321   1   1211    14678899999999988


Q ss_pred             cccceEEEEeeCChhHHHHHHHHHH
Q 017967          310 AERIGAMNVVCSSSDLAARVKSQLK  334 (363)
Q Consensus       310 G~RvG~i~~v~~~~~~~~~~~~~l~  334 (363)
                      |  +||+  +++ ++    +++.+.
T Consensus       232 G--~G~~--~~~-~~----~~~~~~  247 (406)
T 1kmj_A          232 G--IGIL--YVK-EA----LLQEMP  247 (406)
T ss_dssp             T--CEEE--EEC-HH----HHHHCC
T ss_pred             C--cEEE--EEe-HH----HHhhcC
Confidence            8  8999  665 66    455444

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.89  E-value=6.9e-23  Score=198.48  Aligned_cols=248  Identities=10%  Similarity=0.025  Sum_probs=168.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|++.|.+...-+.  .++.+.+++.+.+....  ...|.+..+..+|++++++++.+    . .+++|++  |+||+
T Consensus        42 ~~id~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~----~-~~~~v~~--~~g~~  112 (426)
T 1sff_A           42 EYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG----D-FAKKTLL--VTTGS  112 (426)
T ss_dssp             EEEESSHHHHTCTTCB--TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSC----S-SCEEEEE--ESSHH
T ss_pred             EEEEcccChhhcccCC--CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCc----c-cccEEEE--eCchH
Confidence            6889988874212232  46677787777664321  12466788999999999999632    1 2478988  99999


Q ss_pred             HHHHHHHHHH-HHhCCCCEEEEcCCCCcchH-HHHhhCCCC-------------eEEEecccC---CCCCCCHHHHHHHH
Q 017967          162 GSLRLAAALI-ERYFPGAKVLISSPTWGNHK-NIFNDARVP-------------WSEYRYYDP---KTVGLDFEGMIADI  223 (363)
Q Consensus       162 ~al~l~~~l~-~~~~~gd~Vlv~~P~y~~~~-~~~~~~G~~-------------~~~v~~~~~---~~~~~d~~~l~~~l  223 (363)
                      +|++++..+. ....+| .|++++|+|.++. ..+...|.+             ++.+++...   .++.+|++.|++.+
T Consensus       113 ~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l  191 (426)
T 1sff_A          113 EAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIF  191 (426)
T ss_dssp             HHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHH
Confidence            9999985532 334565 8999999998764 355555543             666776320   12347899999998


Q ss_pred             HcC--CCCcEEEEE-cCCCCCCC-CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEE
Q 017967          224 KAA--PGGSFILLH-GCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (363)
Q Consensus       224 ~~~--~~~~~~~~i-~~p~NPTG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~  299 (363)
                      ++.  +++++++++ +++|| || .+++.+++++|.++|+++|+++|+||+|.+|.+.+.   ...+    +.......+
T Consensus       192 ~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~----~~~~~~~di  263 (426)
T 1sff_A          192 KNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAM----EQMGVAPDL  263 (426)
T ss_dssp             HHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG----GGTTSCCSE
T ss_pred             HhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc---hhhh----hhcCCCCCE
Confidence            731  123444444 56788 99 889999999999999999999999999999865431   1111    111112234


Q ss_pred             EcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          300 QSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       300 ~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      .||||.++. |+|+||+  +++ ++    +++.+.........+.+.++|.++...|+
T Consensus       264 ~s~sK~~~~-GlriG~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~aal~  313 (426)
T 1sff_A          264 TTFAKSIAG-GFPLAGV--TGR-AE----VMDAVAPGGLGGTYAGNPIACVAALEVLK  313 (426)
T ss_dssp             EEECGGGGT-SSCCEEE--EEE-HH----HHTTSCTTSBCCSSSSCHHHHHHHHHHHH
T ss_pred             EEEcccccC-CCceEEE--EEc-HH----HHhhhccCCcCcCCCCCHHHHHHHHHHHH
Confidence            499999995 9999999  776 55    44444433233445778899988875554

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.89  E-value=1e-22  Score=191.89  Aligned_cols=210  Identities=16%  Similarity=0.103  Sum_probs=147.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+|+|+.+.+      +++.+.+.+++.+... .. ..|.+..+..+||+++|+++..        +++++  +.||+++
T Consensus         4 ~~i~~~~~~~------~~p~~~~~~a~~~~~~-~~-~~y~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~a   65 (347)
T 1jg8_A            4 MMIDLRSDTV------TKPTEEMRKAMAQAEV-GD-DVYGEDPTINELERLAAETFGK--------EAALF--VPSGTMG   65 (347)
T ss_dssp             -CEECSCGGG------CCCCHHHHHHHHTCCC-CC-GGGTCCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHH
T ss_pred             eEEEeccccC------CCCCHHHHHHHhcCCC-CC-cccCCChHHHHHHHHHHHHhCC--------ceEEE--ecCcHHH
Confidence            5789988775      3356778777654321 12 4687888999999999999732        35555  7888899


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcch-H--HHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC---CCCcEEEEEcC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNH-K--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGC  237 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~-~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~i~~  237 (363)
                      +.++  +...+.|||+|++++|+|... .  ..++..|++++.+ ..  +++.+|++.+++++++.   .++++++++++
T Consensus        66 ~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~  140 (347)
T 1jg8_A           66 NQVS--IMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIEN  140 (347)
T ss_dssp             HHHH--HHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEES
T ss_pred             HHHH--HHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEec
Confidence            7776  444567999999999998653 2  2567789998888 42  34568999999988641   12477888899


Q ss_pred             CCCCC-CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCC--cCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccce
Q 017967          238 AHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF--ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (363)
Q Consensus       238 p~NPT-G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~--~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG  314 (363)
                      ||||| |.+++.+++++|+++|+++|+++|+|++|...  .+.+.     +...+....+ . ++.||||.++.+   +|
T Consensus       141 ~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~-----~~~~~~~~~d-~-~~~s~sK~l~~~---~G  210 (347)
T 1jg8_A          141 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV-----PVKEYAGYAD-S-VMFCLSKGLCAP---VG  210 (347)
T ss_dssp             SBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC-----CHHHHHHTCS-E-EEEESSSTTCCS---SC
T ss_pred             cccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC-----ChHHhccccc-E-EEEecccccCCC---ce
Confidence            99999 99999999999999999999999999986421  11111     1122222333 3 345899998743   78


Q ss_pred             EEEEeeCChhHHHH
Q 017967          315 AMNVVCSSSDLAAR  328 (363)
Q Consensus       315 ~i~~v~~~~~~~~~  328 (363)
                      |+  ++.+++.+++
T Consensus       211 ~~--~~~~~~~~~~  222 (347)
T 1jg8_A          211 SV--VVGDRDFIER  222 (347)
T ss_dssp             EE--EEECHHHHHH
T ss_pred             EE--EEcCHHHHHH
Confidence            64  3445764433

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.89  E-value=2.1e-21  Score=189.90  Aligned_cols=220  Identities=10%  Similarity=0.040  Sum_probs=156.5

Q ss_pred             CcEEeecccc-CCCCCC---ccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccc
Q 017967           84 KKLNLGVGAY-RTEELQ---PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (363)
Q Consensus        84 ~~i~l~~g~~-~~~~~~---~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (363)
                      +.++|+.|.+ .|...+   ..+.+.+.+++.    ... ..|.+..|..+||+++++++..        +++++  |.|
T Consensus        34 ~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~~~-~~y~~~~~~~~l~~~la~~~~~--------~~~~~--~~~   98 (456)
T 2ez2_A           34 NTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----MGD-EAYAGSENFYHLERTVQELFGF--------KHIVP--THQ   98 (456)
T ss_dssp             CGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----TCC-CCSSSCHHHHHHHHHHHHHHCC--------SEEEE--ESS
T ss_pred             CcccCCcccceeeeccccCCccCCHHHHHHhh----cch-hhcccChhHHHHHHHHHHHhCC--------CcEEE--eCC
Confidence            5677777753 222221   134455655543    222 4688888999999999999732        46767  999


Q ss_pred             hhHHHHHHHHHHHHhCCCCEEEEcCCCC-cchHHHHhhCCCCeEEEecccC---C-----CCCCCHHHHHHHHHcCC-CC
Q 017967          160 GTGSLRLAAALIERYFPGAKVLISSPTW-GNHKNIFNDARVPWSEYRYYDP---K-----TVGLDFEGMIADIKAAP-GG  229 (363)
Q Consensus       160 gt~al~l~~~l~~~~~~gd~Vlv~~P~y-~~~~~~~~~~G~~~~~v~~~~~---~-----~~~~d~~~l~~~l~~~~-~~  229 (363)
                      |++|+.++.  ..++.+||  +++.|+| ..+...++..|++++.+++++.   .     ++++|++.|++++++.. ..
T Consensus        99 gt~a~~~al--~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~  174 (456)
T 2ez2_A           99 GRGAENLLS--QLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAEN  174 (456)
T ss_dssp             HHHHHHHHH--HHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGG
T ss_pred             cHHHHHHHH--HHhCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccc
Confidence            999999884  44467999  7889999 8778889999999999988531   1     36889999999997522 12


Q ss_pred             cEEEEEcCCCC-CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC----------CcCCCCCCchhHHHHHHhcCCeEEE
Q 017967          230 SFILLHGCAHN-PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG----------FASGSLDNDASSVRLFATRGMELLV  298 (363)
Q Consensus       230 ~~~~~i~~p~N-PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~----------~~~~~~~~~~~~~~~~~~~~~~vi~  298 (363)
                      .+++++++||| |||.+++.+++++|+++|+++|+++|+||+|..          +.+.+  ....++........++++
T Consensus       175 ~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~~d~~~  252 (456)
T 2ez2_A          175 IAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFEN--KSIAEIVHEMFSYADGCT  252 (456)
T ss_dssp             EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHTTCSEEE
T ss_pred             eeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCC--cchhhhhhhhcccCCEEE
Confidence            37888899999 999999999999999999999999999999875          34432  111111101122245555


Q ss_pred             EEcCccccccccccceEEEEeeCChhHHHHH
Q 017967          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       299 ~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      + |++|.++ +| |.||+  ++.+++.++++
T Consensus       253 ~-S~kk~~~-~~-~gG~~--~~~~~~~~~~~  278 (456)
T 2ez2_A          253 M-SGKKDCL-VN-IGGFL--CMNDDEMFSSA  278 (456)
T ss_dssp             E-ETTTTTC-CS-SCEEE--EESCHHHHHHH
T ss_pred             E-eCcccCC-CC-ceeEE--EECCHHHHHHH
Confidence            5 7888765 77 89999  77567744433

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.89  E-value=6.4e-23  Score=201.49  Aligned_cols=231  Identities=13%  Similarity=0.102  Sum_probs=156.3

Q ss_pred             CcEEeecc-ccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVG-AYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g-~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      +.|+|+.| .+ +...++.+.+.......... ....+.|. ..|.+ +++++++++....+.    +++++  +.+|++
T Consensus        90 ~~i~l~~g~~~-~~~~~~~i~~a~~~~~~~~~-~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~--~~sGt~  159 (464)
T 1ibj_A           90 LLVNLDNKFDP-FDAMSTPLYQTATFKQPSAI-ENGPYDYT-RSGNP-TRDALESLLAKLDKA----DRAFC--FTSGMA  159 (464)
T ss_dssp             HHTCCCCSSCT-TCCSSCCCCCCSBCCCSSSS-CCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEE--ESSHHH
T ss_pred             eEEECCCCCCC-CCCCCccHHhhhhhhhhccc-ccCCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEEE--ECCHHH
Confidence            57888887 43 33333333332221100001 11225575 44544 555555555443332    36655  788899


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p  238 (363)
                      |+.++   +..+.+||+|+++.|+|..+...    ++..|++++.++..       |++.++++++   ++++++++++|
T Consensus       160 al~~~---l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-------d~~~l~~~i~---~~tk~v~l~~p  226 (464)
T 1ibj_A          160 ALSAV---THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-------KLDEVAAAIG---PQTKLVWLESP  226 (464)
T ss_dssp             HHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-------SHHHHHHHCC---SSEEEEEECSS
T ss_pred             HHHHH---HHHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHHhc---cCceEEEEeCC
Confidence            98766   33567999999999999998764    45789999998862       7899999886   35788889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc-ccccceEEE
Q 017967          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMN  317 (363)
Q Consensus       239 ~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l-~G~RvG~i~  317 (363)
                      |||||.+++   +++|+++|+++|+++|+||+|.......      +.    + .+..++++|+||.++. .|+|+||+ 
T Consensus       227 ~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~~~~------~~----~-~~~div~~S~sK~~~g~~Gl~~G~l-  291 (464)
T 1ibj_A          227 TNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLSR------PL----E-LGADIVMHSATKFIAGHSDVMAGVL-  291 (464)
T ss_dssp             CTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCC------GG----G-TTCSEEEEETTTTTTCSSCCCCEEE-
T ss_pred             CCCCCEeec---HHHHHHHHHHcCCEEEEECCCcccccCC------hh----h-cCCEEEEECCcccccCCCCCcEEEE-
Confidence            999999995   6778888999999999999997532210      11    1 2578999999998864 49999999 


Q ss_pred             EeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          318 VVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       318 ~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       ++++++    +++.+.........+.+.+.|.++...|+
T Consensus       292 -~~~~~~----l~~~l~~~~~~~g~~~~~~~~~a~~~al~  326 (464)
T 1ibj_A          292 -AVKGEK----LAKEVYFLQNSEGSGLAPFDCWLCLRGIK  326 (464)
T ss_dssp             -EECSHH----HHHHHHHHHHHTTCBCCHHHHHHHHHHHT
T ss_pred             -EEChHH----HHHHHHHHHHhcCCCCCHHHHHHHHhchh
Confidence             777656    44445444433445677888887666554

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.88  E-value=9.3e-23  Score=194.74  Aligned_cols=205  Identities=12%  Similarity=0.011  Sum_probs=149.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC---CC---CCCC-CcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NK---EYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~---~Y~~-~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      +.++|..+.+      ...++.+.+++.+.+....   ..   .|.. ..+..++|+++++++.      +++++|++  
T Consensus        16 ~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g------~~~~~v~~--   81 (390)
T 1elu_A           16 NKTYFNFGGQ------GILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN------VDPNTITI--   81 (390)
T ss_dssp             TSEECCTTTC------CCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT------SCGGGEEE--
T ss_pred             CeEEecCCcc------CCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcC------CCHHHEEE--
Confidence            6788887653      2234566666655442210   01   3533 3688999999999963      23578988  


Q ss_pred             ccchhHHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHH----HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcE
Q 017967          157 GLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~-~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                      |.||+++++++  +..+ +.+||+|+++.|+|..+...    ++..|++++.++.+.++++.+|++.+++.++   ++++
T Consensus        82 ~~g~t~a~~~~--~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~~~~  156 (390)
T 1elu_A           82 TDNVTTGCDIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG---PKTR  156 (390)
T ss_dssp             ESSHHHHHHHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC---TTEE
T ss_pred             eCChHHHHHHH--HhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC---CCce
Confidence            99999999988  3344 56999999999999997654    4667999999998533567899999998876   3567


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHH----hcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQ----EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~s~~~~~~i~~~~~----~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                      ++++++||||||.+++   +++|.++|+    ++|+++|+||+|......   .   .    .......+++.|+||.+ 
T Consensus       157 ~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~---~---~----~~~~~~d~~~~s~~K~~-  222 (390)
T 1elu_A          157 LVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---L---D----FSRLEVDYYAFTGHKWF-  222 (390)
T ss_dssp             EEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---C---C----TTTSCCSEEEEESSSTT-
T ss_pred             EEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCcC---C---C----hhhcCCCEEEccccccc-
Confidence            8888999999999999   667777899    999999999999742211   0   1    11224568899999944 


Q ss_pred             cccccceEEEEeeCChh
Q 017967          308 LYAERIGAMNVVCSSSD  324 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~  324 (363)
                      ..|.|+||+  +++ ++
T Consensus       223 ~~~~g~G~~--~~~-~~  236 (390)
T 1elu_A          223 AGPAGVGGL--YIH-GD  236 (390)
T ss_dssp             CCCTTCEEE--EEC-TT
T ss_pred             cCCCceEEE--EEC-HH
Confidence            357789999  666 44

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.88  E-value=2.2e-22  Score=191.49  Aligned_cols=238  Identities=13%  Similarity=0.102  Sum_probs=164.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++||+.|.+....+  +.++.+.+++.+.+...  ....| +..+..++++++++++    +.   ++++++  |+||+
T Consensus        29 ~~ld~~~~~~~~~~g--~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~----g~---~~~v~~--~~g~t   96 (375)
T 2eh6_A           29 EYLDFVSGIGVNSLG--HAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF----WT---EGKVFF--ANSGT   96 (375)
T ss_dssp             EEEESSHHHHTCTTC--BSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS----SS---CEEEEE--ESSHH
T ss_pred             EEEEcCCcccccccC--CCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc----CC---CCeEEE--eCchH
Confidence            689999988632222  24667777776665321  12356 5678899999999985    22   368877  99999


Q ss_pred             HHHHHHHHHHH-Hh---CCC-CEEEEcCCCCcchHHHHhhCCCC-------------eEEEecccCCCCCCCHHHHHHHH
Q 017967          162 GSLRLAAALIE-RY---FPG-AKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       162 ~al~l~~~l~~-~~---~~g-d~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      ++++++..... ..   .|| |+|++++|+|..+...+...+..             +..++.       .|++.+++++
T Consensus        97 ~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l  169 (375)
T 2eh6_A           97 ESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLL  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHHHHh
Confidence            99998854322 24   688 99999999999886655433221             222221       4889998877


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcC
Q 017967          224 KAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~  302 (363)
                      +   +++++++++++|||||.+ .+.+++++|.++|+++|+++|+||+|.+|...+.   ......+ ....+++   ||
T Consensus       170 ~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~-~~~~d~~---s~  239 (375)
T 2eh6_A          170 D---EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE---FYAYQHF-NLKPDVI---AL  239 (375)
T ss_dssp             C---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSEE---EE
T ss_pred             c---CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---chhhhhc-CCCCCEE---EE
Confidence            6   356788889999999999 5789999999999999999999999998765321   1112111 2223443   88


Q ss_pred             ccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       303 SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ||.++ +|+|+||+  +++ ++    +++.+.........+.+.+.|.++...|+.
T Consensus       240 SK~~~-~g~~~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  287 (375)
T 2eh6_A          240 AKGLG-GGVPIGAI--LAR-EE----VAQSFTPGSHGSTFGGNPLACRAGTVVVDE  287 (375)
T ss_dssp             CGGGG-TTSCCEEE--EEE-HH----HHTTCCTTSCCCSSTTCHHHHHHHHHHHHH
T ss_pred             ccccc-CCCCeEEE--EEc-HH----HHhhhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            89999 79999999  665 45    444444322233446688888877665543

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.88  E-value=6.8e-22  Score=190.12  Aligned_cols=237  Identities=12%  Similarity=0.048  Sum_probs=164.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|.+.+..+.  ..+.+.+++.+.+.... ...+.+.....++++.+++++ +       .+++++  |+||++
T Consensus        40 ~~lD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~-------~~~v~~--~~gg~~  107 (406)
T 4adb_A           40 EYIDFAGGIAVNALGH--AHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-F-------ADRVFF--CNSGAE  107 (406)
T ss_dssp             EEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHS-S-------CSEEEE--ESSHHH
T ss_pred             EEEECCCchhhcccCC--CCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhC-C-------CCeEEE--eCcHHH
Confidence            6899998843222232  35677777766654311 111224455677888888774 2       358877  999999


Q ss_pred             HHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHHHHhhCCC-------------CeEEEecccCCCCCCCHHHHHHHH
Q 017967          163 SLRLAAALIERY-----FPG-AKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       163 al~l~~~l~~~~-----~~g-d~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      |++++..++...     .+| |.|++++|+|..+...+...+.             .+..+|.       .|++.|++++
T Consensus       108 a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l  180 (406)
T 4adb_A          108 ANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASALI  180 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHHHh
Confidence            999885433221     055 9999999999988555443332             3334433       3788998877


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCCC--CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          224 KAAPGGSFILLHGCAHNPTGIDP--TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~~--s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      +   +++++++++ |+||||.++  +.+++++|+++|+++|+++|+||+|.+|.+.+.   ...... .+...+++   +
T Consensus       181 ~---~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~-~~~~~d~~---t  249 (406)
T 4adb_A          181 D---DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE---LYAYMH-YGVTPDLL---T  249 (406)
T ss_dssp             S---TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHH-HTCCCSEE---E
T ss_pred             c---CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch---hHHHHh-cCCCCCEE---E
Confidence            6   356677766 999999998  999999999999999999999999998876532   122222 23344555   6


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |||.++ +|+|+||+  +++ ++    +++.+.........+.+.++|.++...|+.
T Consensus       250 ~sK~~~-~G~r~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  298 (406)
T 4adb_A          250 TAKALG-GGFPVGAL--LAT-EE----CARVMTVGTHGTTYGGNPLASAVAGKVLEL  298 (406)
T ss_dssp             ECGGGG-TTSCCEEE--EEC-HH----HHHTCCTTSSCCSSTTCHHHHHHHHHHHHH
T ss_pred             echhhc-CCCCeEEE--EEc-HH----HHhhhccCCcCCCCCCCHHHHHHHHHHHHH
Confidence            799999 99999999  665 66    555555554455668889999988776653

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.88  E-value=1.9e-21  Score=186.96  Aligned_cols=239  Identities=14%  Similarity=0.065  Sum_probs=159.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-C-----CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-----ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-----~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      +++++..+.+.   +.+ ..+.+.+++.+.+.. .     ....|+...+..++|+++|+++..       +++|++  +
T Consensus        47 ~~i~~~~~~~~---~~~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-------~~~i~~--~  113 (401)
T 2bwn_A           47 DITVWCGNDYL---GMG-QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-------EAALVF--S  113 (401)
T ss_dssp             EEEECSCSCTT---SGG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-------SEEEEE--S
T ss_pred             cEEEeeCCCcc---cCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-------CcEEEE--C
Confidence            45777655431   111 234577776665532 1     113355667899999999999632       467766  6


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC-CCcEEEEEc
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP-GGSFILLHG  236 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~  236 (363)
                      .|++ +...+..++....+||.|+++.|+|..+...++..|++++.++.+       |++.+++.++... +++++++++
T Consensus       114 sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~  185 (401)
T 2bwn_A          114 SAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFE  185 (401)
T ss_dssp             CHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEE
T ss_pred             CcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEe
Confidence            6665 555553322223599999999999999999999999999999862       7889998887532 356788899


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-CCeEEEEEcCccccccccccceE
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~l~G~RvG~  315 (363)
                      +|+||||.+++   +++|+++|+++|+++|+||+|....++.. .  ..+....+. ...+++++||||.||++|   ||
T Consensus       186 ~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~-g--~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~  256 (401)
T 2bwn_A          186 SVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPR-G--AGVAERDGLMHRIDIFNGTLAKAYGVFG---GY  256 (401)
T ss_dssp             SBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTT-S--CCHHHHHTCGGGCSEEEEESSSTTCSCC---EE
T ss_pred             cCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCC-C--ceeeeccCccccCcEEEeechhhccCCC---CE
Confidence            99999999998   57788889999999999999995444311 1  111111111 124788999999999888   99


Q ss_pred             EEEeeCChhHHHHHHHHHHhhhcc--ccCCCchHHHHHHhcccccc
Q 017967          316 MNVVCSSSDLAARVKSQLKRLARP--MYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       316 i~~v~~~~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~~~~~l~~~  359 (363)
                      +  +++ ++.    ++.+......  ...+.+.+.|.++...++..
T Consensus       257 ~--~~~-~~~----~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~  295 (401)
T 2bwn_A          257 I--AAS-ARM----VDAVRSYAPGFIFSTSLPPAIAAGAQASIAFL  295 (401)
T ss_dssp             E--EEC-HHH----HHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHH
T ss_pred             E--ecC-HHH----HHHHHHhCcCceecCCCCHHHHHHHHHHHHHH
Confidence            9  664 663    3444332211  11234457776665555443

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.88  E-value=5.5e-22  Score=190.60  Aligned_cols=236  Identities=12%  Similarity=0.124  Sum_probs=162.2

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHcc-CCC---CCC--CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-GEN---KEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~---~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      ..+|||+.|.|.   + ...++.+.+++.+.+.. ...   ..|  +...+..++|+++++++. .      ++.+++  
T Consensus        45 ~~~id~~~~~~~---g-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-~------~~~i~~--  111 (401)
T 1fc4_A           45 SHVINFCANNYL---G-LANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG-M------EDAILY--  111 (401)
T ss_dssp             CEEEECCCSCTT---S-CTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT-C------SEEEEE--
T ss_pred             ccEEEeeccCcc---c-ccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhC-C------CcEEEe--
Confidence            368999988542   2 11356666666555432 110   122  125678999999999972 2      244544  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCC---CcEEE
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG---GSFIL  233 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~---~~~~~  233 (363)
                       .+|++++.++  +...+.+||.|+++.|+|..+...++..|++++.++.       .|++.+++.+++..+   +++++
T Consensus       112 -~sGs~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v  181 (401)
T 1fc4_A          112 -SSCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLI  181 (401)
T ss_dssp             -SCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEE
T ss_pred             -CChHHHHHHH--HHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEE
Confidence             5567787776  4445679999999999999888889999999988863       478999988874211   46788


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC-CCcCCCCCCchhHHHHHHhc-CCeEEEEEcCcccc-cccc
Q 017967          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATR-GMELLVAQSYSKNL-GLYA  310 (363)
Q Consensus       234 ~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~-~l~G  310 (363)
                      ++++||||||.+++   +++|.++|+++|+++|+||+|. ++.+... ...   ..+.+. .+.+++++||||.+ |.+|
T Consensus       182 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g-~~~---~~~~~~~~~~di~~~s~sK~~~~~~g  254 (401)
T 1fc4_A          182 ATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG-RGS---HEYCDVMGRVDIITGTLGKALGGASG  254 (401)
T ss_dssp             EEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CCH---HHHTTCTTCCSEEEEESSSTTCSSSC
T ss_pred             EEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCC-Ccc---HHHcCCCcCCcEEEecchhhccCCCC
Confidence            88999999999998   6778888999999999999995 8763211 111   122221 24579999999999 6554


Q ss_pred             ccceEEEEeeCChhHHHHHHHHHHhhhcc--ccCCCchHHHHHHhccccc
Q 017967          311 ERIGAMNVVCSSSDLAARVKSQLKRLARP--MYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       311 ~RvG~i~~v~~~~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~~~~~l~~  358 (363)
                         ||+  +++ ++    +++.+......  ...+++.+.|.++...|+.
T Consensus       255 ---G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~  294 (401)
T 1fc4_A          255 ---GYT--AAR-KE----VVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM  294 (401)
T ss_dssp             ---EEE--EEC-HH----HHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH
T ss_pred             ---EEE--EcC-HH----HHHHHHHhCcCceeCCCCCHHHHHHHHHHHHH
Confidence               999  664 77    44444433211  1347788888888766554

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.88  E-value=9.5e-22  Score=188.89  Aligned_cols=236  Identities=13%  Similarity=0.118  Sum_probs=160.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCC--CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|++.|...+..+.  ..+.+.+++.+.......  ..| +.....++++.+++++    +    .+++++  |+||+
T Consensus        41 ~~ld~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~v~~--~~gg~  107 (397)
T 2ord_A           41 AYLDFTSGIAVNVLGH--SHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNT----F----GGKVFF--ANTGT  107 (397)
T ss_dssp             EEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTT----T----SCEEEE--ESSHH
T ss_pred             EEEECCccccccccCC--CCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhc----C----CCeEEE--eCCHH
Confidence            6789987742111222  356677776665533111  113 3334566777776664    2    378877  99999


Q ss_pred             HHHHHHHHHHHHh----CC-CCEEEEcCCCCcch-HHHHhhCCCC------------eEEEecccCCCCCCCHHHHHHHH
Q 017967          162 GSLRLAAALIERY----FP-GAKVLISSPTWGNH-KNIFNDARVP------------WSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       162 ~al~l~~~l~~~~----~~-gd~Vlv~~P~y~~~-~~~~~~~G~~------------~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      +|+.++...+...    .+ ++.|++.+|+|.+. ...++..|.+            ++.++.       .|++.+++.+
T Consensus       108 ~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l  180 (397)
T 2ord_A          108 EANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKM  180 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHHh
Confidence            9999885443221    15 47899999999654 4466677765            556654       2899999988


Q ss_pred             HcCCCCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcC
Q 017967          224 KAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~  302 (363)
                      +   ++++++++++||||||. +++.+++++|+++|+++|+++|+||+|.++.+.+.   ..+...+ +...+++   ||
T Consensus       181 ~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~-~~~~d~~---s~  250 (397)
T 2ord_A          181 S---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK---LFAYQKY-GVVPDVL---TT  250 (397)
T ss_dssp             C---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE---EE
T ss_pred             h---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc---chhhhhh-CCCCCee---ee
Confidence            6   35778888999999999 99999999999999999999999999998865431   2223222 2223433   88


Q ss_pred             ccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       303 SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ||.++ +|+|+||+  +++++     ++ .+........++.+.++|.++...|+.
T Consensus       251 sK~~~-~G~r~G~~--~~~~~-----~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~  297 (397)
T 2ord_A          251 AKGLG-GGVPIGAV--IVNER-----AN-VLEPGDHGTTFGGNPLACRAGVTVIKE  297 (397)
T ss_dssp             CGGGG-TTSCCEEE--EECST-----TC-CCCTTSSCCSSTTCHHHHHHHHHHHHH
T ss_pred             ccccC-CCcCeEEE--EEchH-----hc-ccCCCCcCCCCCCCHHHHHHHHHHHHH
Confidence            99999 89999999  77644     33 333222334457788888888776643

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.88  E-value=1e-22  Score=192.06  Aligned_cols=216  Identities=12%  Similarity=-0.042  Sum_probs=154.8

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      |+.|+|+.+.+      ..+++.+.+++.+...     +|....|..++++++++++....+  .++++|++  |.||++
T Consensus        13 p~~i~l~~~~~------~~~~~~v~~a~~~~~~-----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~--~~g~t~   77 (359)
T 1svv_A           13 PKPYSFVNDYS------VGMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHF--ISGGTQ   77 (359)
T ss_dssp             --CEECSCSCS------SCCCHHHHHHHHHHTT-----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEE--ESCHHH
T ss_pred             CeeEEecCCCc------CCCCHHHHHHHHHHHh-----hccccccccHHHHHHHHHHHHHhC--CCCccEEE--eCCchH
Confidence            46889986542      2456788888777653     365566767777777777655444  34678988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHH--HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC----CCcEEEEEc
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKN--IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP----GGSFILLHG  236 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~----~~~~~~~i~  236 (363)
                      +++++  +...+.+||+|++++|+|..+..  .++..|++++.++.+   ++++|++.+++.+++.+    .++++++++
T Consensus        78 a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~  152 (359)
T 1svv_A           78 TNLIA--CSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYIS  152 (359)
T ss_dssp             HHHHH--HHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEE
T ss_pred             HHHHH--HHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEE
Confidence            99988  44446799999999999999877  478899999999973   57899999999998531    126777788


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCC--chhHHHHHHhcCCeEEEEEcCccccccccccce
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN--DASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG  314 (363)
                      +| ||||.+++.+++++|+++|+++|+++|+||+|.+|..+....  ....+...     ..+++.|++|..+  ...+|
T Consensus       153 ~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-----~d~~~~s~~K~g~--~~~~g  224 (359)
T 1svv_A          153 NT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARL-----TDMFYIGATKAGG--MFGEA  224 (359)
T ss_dssp             SS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHH-----CSEEEEECTTTTC--SSCEE
T ss_pred             cC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhc-----CCEEEEecccCCC--CCceE
Confidence            88 899999999999999999999999999999985443221111  11111111     2367788999744  35578


Q ss_pred             EEEEeeCChhHHHHH
Q 017967          315 AMNVVCSSSDLAARV  329 (363)
Q Consensus       315 ~i~~v~~~~~~~~~~  329 (363)
                      ++  +++ ++.++++
T Consensus       225 ~l--~~~-~~~~~~~  236 (359)
T 1svv_A          225 LI--ILN-DALKPNA  236 (359)
T ss_dssp             EE--ECS-GGGCTTH
T ss_pred             EE--EEc-ccHHHHH
Confidence            88  554 6643333

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.87  E-value=1e-21  Score=189.97  Aligned_cols=203  Identities=14%  Similarity=0.058  Sum_probs=147.5

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCC----------CCcchHHHHHHHHHHHhcCCCCcccCCcE
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL----------PIEGLAAFNKVTAELLFGADNSVLKEQRV  152 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~----------~~~G~~~lr~aia~~l~~~~~~~~~~~~i  152 (363)
                      ++.|.|..+.+      ..+++.+.+++.+.+.......++          ...+..++++++++++..      ++++|
T Consensus        21 ~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~------~~~~v   88 (423)
T 3lvm_A           21 KLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA------DPREI   88 (423)
T ss_dssp             CSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTC------CGGGE
T ss_pred             CCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCC------CCCeE
Confidence            46788776543      345677888776554310001111          123457888899988643      36789


Q ss_pred             EEEeccchhHHHHHHHHHHHH-h-CCCCEEEEcCCCCcchHHHH---hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC
Q 017967          153 ATVQGLSGTGSLRLAAALIER-Y-FPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (363)
Q Consensus       153 ~~~~t~ggt~al~l~~~l~~~-~-~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (363)
                      ++  |.||++|++++...+.. + .+||.|+++.|+|+.+...+   +..|++++.++.+  .++.+|++.++++++   
T Consensus        89 ~~--~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---  161 (423)
T 3lvm_A           89 VF--TSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ--RNGIIDLKELEAAMR---  161 (423)
T ss_dssp             EE--ESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHCC---
T ss_pred             EE--eCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccC--CCCccCHHHHHHhcC---
Confidence            88  99999999988543321 1 27999999999999987776   5569999999984  367889999999887   


Q ss_pred             CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       228 ~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                      ++++++++++||||||.+++   +++|+++|+++|+++|+||+|...... .     .    .......+++.||||.+|
T Consensus       162 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~-----~----~~~~~~di~~~s~sK~~g  228 (423)
T 3lvm_A          162 DDTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP-I-----D----LSQLKVDLMSFSGHKIYG  228 (423)
T ss_dssp             TTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C-----C----TTTSCCSEEEEESTTTTS
T ss_pred             CCcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-c-----C----hhhcCCCEEEechHHhcC
Confidence            35778889999999999999   566788899999999999998653321 0     0    112235688999999888


Q ss_pred             cccccceEEEEeeC
Q 017967          308 LYAERIGAMNVVCS  321 (363)
Q Consensus       308 l~G~RvG~i~~v~~  321 (363)
                      .+|  +||+  +++
T Consensus       229 ~~g--~G~~--~~~  238 (423)
T 3lvm_A          229 PKG--IGAL--YVR  238 (423)
T ss_dssp             CSS--CEEE--EEC
T ss_pred             CCC--eEEE--EEe
Confidence            666  8999  665

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.87  E-value=2.9e-21  Score=187.72  Aligned_cols=235  Identities=14%  Similarity=0.085  Sum_probs=161.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc-C-CCCCC----CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER-G-ENKEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~-~~~~Y----~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      .+|||+.|.|.   + ....+.+.+++.+.+.. + ....|    +......++++++++++ +.      + +.++  +
T Consensus        65 ~~id~~~~~~l---g-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~-g~------~-~~i~--~  130 (427)
T 2w8t_A           65 DTILLGTYNYM---G-MTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY-GT------T-GAIV--F  130 (427)
T ss_dssp             EEEECSCCCTT---C-GGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH-TC------S-EEEE--E
T ss_pred             eEEEEECcccc---c-CCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh-CC------C-ceEE--e
Confidence            68999988652   1 11345666666555432 1 11122    23345689999999997 22      2 4444  5


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCC-CcEEEEEc
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG-GSFILLHG  236 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~i~  236 (363)
                      .+|++++..+  +..++.+||.|+++.|+|..+...++..|.+++.++.       .|++.|++.+++..+ ++++++++
T Consensus       131 ~sGs~a~~~a--l~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~  201 (427)
T 2w8t_A          131 STGYMANLGI--ISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVVLE  201 (427)
T ss_dssp             SCHHHHHHHH--HHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred             cCcHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEEEc
Confidence            7777787776  3445679999999999999999999999999888863       589999999985332 57788889


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh-cCCeEEEEEcCccccccccccceE
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-RGMELLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~~l~G~RvG~  315 (363)
                      +++||||.+++   +++|.++|+++|+++|+||+|..+.++..   ..+.....+ ..+.++++.||||.+|++|   ||
T Consensus       202 ~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~---g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~  272 (427)
T 2w8t_A          202 GVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN---GRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GF  272 (427)
T ss_dssp             SEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT---SCCHHHHTTCTTCCSEEEEESSSTTCSCC---EE
T ss_pred             CCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC---CCchHhhcCCCcCCcEEEecchhhhccCC---CE
Confidence            99999999998   67788889999999999999999876521   112222222 2245899999999998777   99


Q ss_pred             EEEeeCChhHHHHHHHHHHhhhc-c-ccCCCchHHHHHHhcccc
Q 017967          316 MNVVCSSSDLAARVKSQLKRLAR-P-MYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       316 i~~v~~~~~~~~~~~~~l~~~~~-~-~~~~~s~~~q~~~~~~l~  357 (363)
                      +  +++ ++    +++.+..... . .....+...+.++...|+
T Consensus       273 v--~~~-~~----l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~  309 (427)
T 2w8t_A          273 V--VSN-HP----KFEAVRLACRPYIFTASLPPSVVATATTSIR  309 (427)
T ss_dssp             E--EEC-CT----TGGGGGGTCHHHHSSCCCCHHHHHHHHHHHH
T ss_pred             E--EeC-HH----HHHHHHHhcccccccCCCCHHHHHHHHHHHH
Confidence            9  665 55    3444433311 1 123455555555544444

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.87  E-value=7.7e-22  Score=188.77  Aligned_cols=194  Identities=11%  Similarity=-0.067  Sum_probs=139.4

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g  177 (363)
                      ++..+++.+.+++.+.... . ..|....+..++|+++++++..      ++++|++  |.||++++.++.  ..++.+|
T Consensus        16 ~~~~~~~~v~~a~~~~~~~-~-~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--t~g~t~a~~~~~--~~~~~~g   83 (392)
T 2z9v_A           16 GPVNAYPEVLRGLGRTVLY-D-YDPAFQLLYEKVVDKAQKAMRL------SNKPVIL--HGEPVLGLEAAA--ASLISPD   83 (392)
T ss_dssp             SCCCCCHHHHHHTTSCCCC-T-TSHHHHHHHHHHHHHHHHHTTC------SSCCEEE--SSCTHHHHHHHH--HHHCCTT
T ss_pred             CCcCCCHHHHHHHhccccc-c-ccHHHHHHHHHHHHHHHHHhCC------CCCEEEE--eCCchHHHHHHH--HHhcCCC
Confidence            3345667787776544322 1 1122234678899999999632      2578988  999999999984  3446799


Q ss_pred             CEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHH
Q 017967          178 AKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (363)
Q Consensus       178 d~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~  255 (363)
                      |+|++++|+|..+  ...++..|++++.++++  .++.+|++.+++.+++.+ +++++++++|+||||.+++   +++|.
T Consensus        84 d~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~nptG~~~~---l~~i~  157 (392)
T 2z9v_A           84 DVVLNLASGVYGKGFGYWAKRYSPHLLEIEVP--YNEAIDPQAVADMLKAHP-EITVVSVCHHDTPSGTINP---IDAIG  157 (392)
T ss_dssp             CCEEEEESSHHHHHHHHHHHHHCSCEEEEECC--TTSCCCHHHHHHHHHHCT-TCCEEEEESEEGGGTEECC---HHHHH
T ss_pred             CEEEEecCCcccHHHHHHHHHcCCceEEeeCC--CCCCCCHHHHHHHHhcCC-CCcEEEEeccCCCCceecc---HHHHH
Confidence            9999999999775  34456689999999984  345699999999996422 4567888999999999998   56778


Q ss_pred             HHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc-ccccccceEEEEeeCChh
Q 017967          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       256 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~l~G~RvG~i~~v~~~~~  324 (363)
                      ++|+++|+++|+|++|......   .   .+    ......+++.|+||.+ |.+|  +||+  +++ ++
T Consensus       158 ~l~~~~~~~li~D~a~~~g~~~---~---~~----~~~~~d~~~~s~sK~~~~~~g--~G~l--~~~-~~  212 (392)
T 2z9v_A          158 ALVSAHGAYLIVDAVSSFGGMK---T---HP----EDCKADIYVTGPNKCLGAPPG--LTMM--GVS-ER  212 (392)
T ss_dssp             HHHHHTTCEEEEECTTTBTTBS---C---CG----GGGTCSEEEECSSSTTCCCSC--CEEE--EEC-HH
T ss_pred             HHHHHcCCeEEEEcccccCCcc---c---cc----ccccceEEEecCcccccCCCc--eeEE--EEC-HH
Confidence            8899999999999998632111   0   11    1113458899999955 4455  4999  665 55

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.87  E-value=6.3e-21  Score=183.47  Aligned_cols=192  Identities=16%  Similarity=0.126  Sum_probs=148.3

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (363)
                      +.....+|++.+++++..        +++++  +.||++|++++  +..++.+||+|+++.|+|..+...+    +..|+
T Consensus        64 ~~~~~~~l~~~la~~~g~--------~~~~~--~~sGt~A~~~a--l~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~  131 (392)
T 3qhx_A           64 GNPTRTALEAALAAVEDA--------AFGRA--FSSGMAAADCA--LRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNV  131 (392)
T ss_dssp             CCHHHHHHHHHHHHHTTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTC
T ss_pred             CChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCc
Confidence            456678999999999532        35666  89999999888  4445789999999999999877766    67899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++.+       |++.++++++   ++++++++++|+||||.+.+   +++|.++|+++|+++|+|++|....... 
T Consensus       132 ~~~~v~~~-------d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~-  197 (392)
T 3qhx_A          132 EYTPVALA-------DLDAVRAAIR---PTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQ-  197 (392)
T ss_dssp             EEEEECTT-------CHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC-
T ss_pred             EEEEeCCC-------CHHHHHHhhC---CCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            99998862       8899999887   35778889999999999986   6778888999999999999998654321 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                         ..      .. ...+++.|+||.+|.+| .|+||+  ++++++    +.+.+...........+++.+.++...++
T Consensus       198 ---~~------~~-~~di~~~S~sK~lg~~g~~~~G~v--~~~~~~----~~~~l~~~~~~~g~~~~~~~~~~~~~~l~  260 (392)
T 3qhx_A          198 ---PL------SL-GADVVLHSTTKYIGGHSDVVGGAL--VTNDEE----LDQSFAFLQNGAGAVPGPFDAYLTMRGLK  260 (392)
T ss_dssp             ---GG------GG-TCSEEEEETTTTTTCSSCCCCEEE--EESCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred             ---hH------Hh-CCcEEEEcCccccCCCCCceEEEE--EECcHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence               11      11 34588999999999777 799999  887666    44445544444556777888877766554

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.87  E-value=2.5e-21  Score=186.44  Aligned_cols=227  Identities=15%  Similarity=0.110  Sum_probs=151.5

Q ss_pred             eeccccCCCCCCccccHHHHHHHHHHHccCCCCCCC--CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHH
Q 017967           88 LGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (363)
Q Consensus        88 l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (363)
                      .+++.| +....++..+.+.++..........+.|.  +.....++++.+++++..       + +.++  +.+|++|+.
T Consensus        26 ~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~-------~-~~i~--~~sG~~a~~   94 (398)
T 1gc0_A           26 GALVPP-VYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGG-------E-AGLA--LASGMGAIT   94 (398)
T ss_dssp             TBSSCC-BCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTC-------S-EEEE--ESSHHHHHH
T ss_pred             CCcCCC-ccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCC-------C-cEEE--ECCHHHHHH
Confidence            345554 44555666677766654221111113343  566788999999999632       2 4444  567789988


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          166 LAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       166 l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++  +..++.+||+|+++.|+|..+...+    +..|++++.++.       .|++.+++.++   ++++++++++|+||
T Consensus        95 ~~--l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~np  162 (398)
T 1gc0_A           95 ST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-------ADLQALEAAMT---PATRVIYFESPANP  162 (398)
T ss_dssp             HH--HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-------TCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred             HH--HHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCC
Confidence            88  4444679999999999999887766    677999888875       27899999886   35778888999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccc-eEEEEee
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVC  320 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i~~v~  320 (363)
                      ||.+++   +++|.++|+++|+++|+||+|..+.+..      +.    . ....+++.|+||.++.+|.|+ ||+  ++
T Consensus       163 tG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~------~~----~-~~~d~~~~S~sK~~~~~~~~~~G~l--~~  226 (398)
T 1gc0_A          163 NMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR------PL----E-LGADLVVHSATKYLSGHGDITAGIV--VG  226 (398)
T ss_dssp             TCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC------GG----G-GTCSEEEEETTTTTTCSSSCCCEEE--EE
T ss_pred             Cccccc---HHHHHHHHHHcCCEEEEECCCcccccCC------ch----h-hCceEEEECCccccCCCCCCeEEEE--EE
Confidence            999986   6778888999999999999998665431      11    1 135688999999999999998 888  66


Q ss_pred             CChhHHHHHHHHHHhhhcc-ccCCCchHHHHHHhcccc
Q 017967          321 SSSDLAARVKSQLKRLARP-MYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       321 ~~~~~~~~~~~~l~~~~~~-~~~~~s~~~q~~~~~~l~  357 (363)
                      + ++.++   +.+...... .....+.+.+.++...|+
T Consensus       227 ~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~  260 (398)
T 1gc0_A          227 S-QALVD---RIRLQGLKDMTGAVLSPHDAALLMRGIK  260 (398)
T ss_dssp             C-HHHHH---HHHHTHHHHHTCCCCCHHHHHHHHHHHT
T ss_pred             C-hHHHH---HHHHHHhhccCCCCCCHHHHHHHHhccc
Confidence            5 44322   133333222 234567777777655554

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.87  E-value=2.1e-21  Score=185.32  Aligned_cols=203  Identities=13%  Similarity=0.049  Sum_probs=144.8

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh-------
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-------  174 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~-------  174 (363)
                      +.+.+.+++.+.+.... ..|....+..++++++.+++....+.  ++++|++  |+||++++.++...+...       
T Consensus        42 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~i~~--~~ggt~a~~~~~~~~~~~~~~~~~~  116 (397)
T 3f9t_A           42 VLPITRKIVDIFLETNL-GDPGLFKGTKLLEEKAVALLGSLLNN--KDAYGHI--VSGGTEANLMALRCIKNIWREKRRK  116 (397)
T ss_dssp             CCTHHHHHHHHHTTCCT-TSGGGBHHHHHHHHHHHHHHHHHTTC--TTCEEEE--ESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhhcC-CCcccChhHHHHHHHHHHHHHHHhCC--CCCCEEE--ecCcHHHHHHHHHHHHHHHHhhhhh
Confidence            45677777766654321 22222235555555555554443332  3678877  999999999885443221       


Q ss_pred             ----CCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHH
Q 017967          175 ----FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ  250 (363)
Q Consensus       175 ----~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~  250 (363)
                          .+||+|+++.|+|..+...++..|++++.+|++  .++.+|++.+++.+++.  +++++++++|+||||.+.+   
T Consensus       117 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~---  189 (397)
T 3f9t_A          117 GLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIK--EDYTIDEKFVKDAVEDY--DVDGIIGIAGTTELGTIDN---  189 (397)
T ss_dssp             TCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBC--TTSSBCHHHHHHHHHHS--CCCEEEEEBSCTTTCCBCC---
T ss_pred             cccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeC--CCCcCCHHHHHHHHhhc--CCeEEEEECCCCCCCCCCC---
Confidence                149999999999999999999999999999984  35789999999999852  4557777899999999976   


Q ss_pred             HHHHHHHHHhcCCeEEEecCCCCCcCCCCCC--------chhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          251 WEKIADVIQEKNHIPFFDVAYQGFASGSLDN--------DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       251 ~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~--------~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      +++|.++|+++|+++|+||+|..+..+....        ....    ... ...+++.|++|.++ +|.|+||+  ++.+
T Consensus       190 l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~s~~K~~~-~~~~~g~~--~~~~  261 (397)
T 3f9t_A          190 IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFD----FSL-GVDSITIDPHKMGH-CPIPSGGI--LFKD  261 (397)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCS----GGG-TCSEEECCTTTTTC-CCSSCEEE--EESS
T ss_pred             HHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccc----ccc-cCCeEEEccccccC-CCCCceEE--EEeC
Confidence            5668888999999999999998764321100        0001    122 44678899999775 78899999  7776


Q ss_pred             hh
Q 017967          323 SD  324 (363)
Q Consensus       323 ~~  324 (363)
                      +.
T Consensus       262 ~~  263 (397)
T 3f9t_A          262 IG  263 (397)
T ss_dssp             GG
T ss_pred             HH
Confidence            66

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.87  E-value=1.2e-20  Score=180.83  Aligned_cols=191  Identities=16%  Similarity=0.122  Sum_probs=142.7

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~  199 (363)
                      +..+..++++++++++..       ++.|++  + +|++++.++.  ...+.+||+|+++.|+|......    ++..|+
T Consensus        50 ~~~~~~~l~~~la~~~~~-------~~~i~~--~-sGt~a~~~~~--~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~  117 (386)
T 1cs1_A           50 GNPTRDVVQRALAELEGG-------AGAVLT--N-TGMSAIHLVT--TVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_dssp             CCHHHHHHHHHHHHHHTC-------SEEEEE--S-SHHHHHHHHH--HHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred             CCccHHHHHHHHHHHhCC-------CcEEEe--C-CHHHHHHHHH--HHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence            567889999999999743       245544  4 4599998883  33467999999999999875443    467899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++.       .|++.+++.+++   +++++++++|+||||.+++   +++|.++|+++|+++|+||+|..+.... 
T Consensus       118 ~~~~~~~-------~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-  183 (386)
T 1cs1_A          118 RVLFVDQ-------GDEQALRAALAE---KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN-  183 (386)
T ss_dssp             EEEEECT-------TCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred             EEEEeCC-------CCHHHHHHhhcc---CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            9888875       288999999983   4567778999999999996   6777888999999999999999887542 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccccccccc-eEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                           +.    . ....+++.|+||.++.+|.|+ ||+  ++++++.    ++.+...........+.+.+.++...+
T Consensus       184 -----~~----~-~~~di~~~s~sK~~~~~~~~~~G~~--~~~~~~l----~~~l~~~~~~~~~~~~~~~~~~~~~~l  245 (386)
T 1cs1_A          184 -----PL----A-LGADLVLHSCTKYLNGHSDVVAGVV--IAKDPDV----VTELAWWANNIGVTGGAFDSYLLLRGL  245 (386)
T ss_dssp             -----GG----G-GTCSEEEEETTTTTTCSSCCCCEEE--EESSHHH----HHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred             -----cc----c-cCceEEEEcCcccccCCCCceeEEE--EeCcHHH----HHHHHHHHHhcCCCCCHHHHHHHHhcc
Confidence                 11    1 246788999999999999998 999  7776563    444443333333456777777654443

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.87  E-value=7.5e-21  Score=182.70  Aligned_cols=192  Identities=15%  Similarity=0.088  Sum_probs=144.7

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~  199 (363)
                      +.....+|++++++++..        +++++  +.+|++|+.++  +..++.+||+|+++.|+|..+...    ++..|+
T Consensus        57 ~~~~~~~l~~~la~~~g~--------~~~i~--~~sG~~ai~~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~  124 (389)
T 3acz_A           57 GNPTVEQFEEMVCSIEGA--------AGSAA--FGSGMGAISSS--TLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGI  124 (389)
T ss_dssp             CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence            356778999999999632        24544  67788998887  333467999999999999987665    578899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +++.++.       .|++.+++.++   ++++++++++|+||||.+++   +++|.++|+++|+++|+|++|..+.... 
T Consensus       125 ~~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~-  190 (389)
T 3acz_A          125 EVDLIDT-------SDVEKVKAAWK---PNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK-  190 (389)
T ss_dssp             EEEEECT-------TCHHHHHHTCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC-
T ss_pred             EEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC-
Confidence            9999876       37899998886   35678888999999999997   6777888999999999999998776431 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCccccccccccc-eEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                           ++    + ....+++.|+||.++.+|.|+ ||+  ++++++    +++.+.........+.+++.+.++...|+
T Consensus       191 -----~~----~-~~~di~~~S~sK~~~~~~~~~~G~v--~~~~~~----~~~~l~~~~~~~g~~~~~~~~~~~~~~l~  253 (389)
T 3acz_A          191 -----PL----E-LGADIALHSVSKYINGHGDVIGGVS--SAKTAE----DIATIKFYRKDAGSLMAPMDAFLCARGMK  253 (389)
T ss_dssp             -----GG----G-TTCSEEEEETTTTTTCSSCCCCEEE--EESSHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred             -----cc----c-cCCeEEEECChhhccCCCCceeEEE--EECcHH----HHHHHHHHHHhcCCCCCHHHHHHHHcCcc
Confidence                 11    1 246789999999999999999 999  776436    34444443332344566777776655554

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.87  E-value=2.1e-21  Score=186.82  Aligned_cols=200  Identities=21%  Similarity=0.127  Sum_probs=151.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ++++|+.|.+.       ..+.+.+++.+.+..   ..|.+..+..++++++++++..        +++++  +.+|+++
T Consensus        31 ~~id~~~~~~~-------~~~~v~~a~~~~~~~---~~y~~~~~~~~l~~~la~~~~~--------~~~v~--~~~Gt~a   90 (399)
T 2oga_A           31 PFLDLKAAYEE-------LRAETDAAIARVLDS---GRYLLGPELEGFEAEFAAYCET--------DHAVG--VNSGMDA   90 (399)
T ss_dssp             CSCCHHHHHHH-------THHHHHHHHHHHHHH---TCCSSSHHHHHHHHHHHHHTTS--------SEEEE--ESCHHHH
T ss_pred             cccccCcCCCC-------CCHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHHCC--------CeEEE--ecCHHHH
Confidence            67899988752       126777777766643   2576778899999999999632        24555  7888999


Q ss_pred             HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       164 l~l~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      +.++  +..+ +.+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.+++   ++++++   ++|||
T Consensus        91 ~~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~~---~~~~v~---~~n~t  161 (399)
T 2oga_A           91 LQLA--LRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPH-EDHPTLDPLLVEKAITP---RTRALL---PVHLY  161 (399)
T ss_dssp             HHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-SSSSSBCHHHHHHHCCT---TEEEEC---CBCGG
T ss_pred             HHHH--HHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecC-CCCCCcCHHHHHHhcCC---CCeEEE---EeCCc
Confidence            8888  3444 5699999999999999999999999999999985 33578999999998863   455554   57999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcC--ccccccccccceEEEEee
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVC  320 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~--SK~~~l~G~RvG~i~~v~  320 (363)
                      |...+   +++|.++|+++|+++|+||+|..+...+.  ..  .    ... ..+++.||  ||.+|.+| |+||+  ++
T Consensus       162 G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~--~~--~----~~~-~di~~~S~~~sK~~~~~G-~~g~~--~~  226 (399)
T 2oga_A          162 GHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG--RR--I----GAG-SSVAAFSFYPGKNLGCFG-DGGAV--VT  226 (399)
T ss_dssp             GCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT--EE--T----TCT-TCEEEEECCTTSSSCCSS-CCEEE--EE
T ss_pred             CCccC---HHHHHHHHHHcCCEEEEECcccccCccCC--ee--c----ccc-cCEEEEeCCCCccCCcCC-ceEEE--Ee
Confidence            99876   66777889999999999999986632111  11  1    111 24788888  89999779 99999  77


Q ss_pred             CChhHHH
Q 017967          321 SSSDLAA  327 (363)
Q Consensus       321 ~~~~~~~  327 (363)
                      ++++.++
T Consensus       227 ~~~~~~~  233 (399)
T 2oga_A          227 GDPELAE  233 (399)
T ss_dssp             SCHHHHH
T ss_pred             CCHHHHH
Confidence            7677433

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.86  E-value=3.9e-21  Score=185.63  Aligned_cols=192  Identities=13%  Similarity=0.069  Sum_probs=144.3

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~  199 (363)
                      +..+..+|++++|+++...       +.|++   .+|++|+.++  +. ++.+||+|+++.|+|......    ++..|+
T Consensus        65 ~~p~~~~l~~~la~~~g~~-------~~i~~---~sG~~ai~~~--~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~  131 (403)
T 3cog_A           65 GNPTRNCLEKAVAALDGAK-------YCLAF---ASGLAATVTI--TH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL  131 (403)
T ss_dssp             -CHHHHHHHHHHHHHHTCS-------EEEEE---SCHHHHHHHH--HT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred             CCchHHHHHHHHHHHhCCC-------cEEEE---CCHHHHHHHH--HH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence            5577899999999997432       45544   4557898887  33 567999999999999875443    457899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcC-CeEEEecCCCCCcCCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN-HIPFFDVAYQGFASGS  278 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~-~~ii~De~y~~~~~~~  278 (363)
                      +++.++.+       |++.++++++   ++++++++++|+||||.+++   +++|+++|+++| +++|+||+|..+.+..
T Consensus       132 ~v~~v~~~-------d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~  198 (403)
T 3cog_A          132 KISFVDCS-------KIKLLEAAIT---PETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR  198 (403)
T ss_dssp             EEEEECTT-------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred             EEEEECCC-------CHHHHHHhcC---cCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence            99999862       7899998886   35778888999999999997   677888899999 9999999999876532


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCccccccccc-cceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAE-RIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~-RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                            ++    + ....++++|+||.++.+|. |+||+  ++++++    +++.+...........+.+.|.++...|+
T Consensus       199 ------~~----~-~~~div~~S~sK~~~g~~~~~~G~v--~~~~~~----l~~~l~~~~~~~g~~~~~~~~~~~~~~l~  261 (403)
T 3cog_A          199 ------PL----A-LGADISMYSATKYMNGHSDVVMGLV--SVNCES----LHNRLRFLQNSLGAVPSPIDCYLCNRGLK  261 (403)
T ss_dssp             ------TT----T-TTCSEEEEETTTTTTCSSCCCCEEE--EECCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred             ------cc----c-cCCeEEEEcChhhccCCCCCeEEEE--EECcHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence                  11    1 2467899999999987764 79999  776677    44444444333445677888887765554


Q ss_pred             c
Q 017967          358 G  358 (363)
Q Consensus       358 ~  358 (363)
                      .
T Consensus       262 ~  262 (403)
T 3cog_A          262 T  262 (403)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.86  E-value=5.3e-21  Score=185.28  Aligned_cols=217  Identities=11%  Similarity=0.027  Sum_probs=148.3

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCC--CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~  175 (363)
                      ...+..+...+....+......+.|.  +.....+|++.+++++..        +++++  +.||++|+.++  +..++.
T Consensus        51 s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~--------~~~~~--~~sG~~Ai~~a--l~~l~~  118 (414)
T 3ndn_A           51 TSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGA--------PAAFA--TASGMAAVFTS--LGALLG  118 (414)
T ss_dssp             CSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCC
T ss_pred             CCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH--HHHHhC
Confidence            34455555544433332222223343  345567888888888532        46666  89999998877  445577


Q ss_pred             CCCEEEEcCCCCcchHHHHh----hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHH
Q 017967          176 PGAKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQW  251 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~  251 (363)
                      +||+|+++.|+|..+...++    ..|++++.++.+       |++.+++++++   +++++++++|+||||.+.+   +
T Consensus       119 ~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~ai~~---~t~~v~le~p~NptG~~~~---l  185 (414)
T 3ndn_A          119 AGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-------DLSQWERALSV---PTQAVFFETPSNPMQSLVD---I  185 (414)
T ss_dssp             TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------CHHHHHHHTSS---CCSEEEEESSCTTTCCCCC---H
T ss_pred             CCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-------CHHHHHHhcCC---CCeEEEEECCCCCCCcccc---H
Confidence            99999999999999877764    499999999862       78999998873   4567778999999999976   6


Q ss_pred             HHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHH
Q 017967          252 EKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       252 ~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~  330 (363)
                      ++|.++|+++|+++|+||+|.......      +    ... ...+++.|+||.++.+| +|+||+  +++ ++.+.   
T Consensus       186 ~~i~~la~~~g~~livDe~~~~~~~~~------~----~~~-g~div~~S~sK~l~~~G~~~~G~v--v~~-~~~~~---  248 (414)
T 3ndn_A          186 AAVTELAHAAGAKVVLDNVFATPLLQQ------G----FPL-GVDVVVYSGTKHIDGQGRVLGGAI--LGD-REYID---  248 (414)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTHHHHCC------C----GGG-TCSEEEEETTTTTTCSSCCCCEEE--EEC-HHHHT---
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCC------c----hhc-CCCeEeccCCccccCCCCceEEEE--EEC-HHHHH---
Confidence            677888999999999999987432211      0    111 23588999999999878 899999  765 44322   


Q ss_pred             HHHHhhhccccCCCchHHHHHHhccc
Q 017967          331 SQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       331 ~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                      +.++..........+.+.+.++...+
T Consensus       249 ~~l~~~~~~~g~~~~~~~a~~~~~~l  274 (414)
T 3ndn_A          249 GPVQKLMRHTGPAMSAFNAWVLLKGL  274 (414)
T ss_dssp             THHHHHHHHHCCCCCHHHHHHHHHHG
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            13332222333455666666555443

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.86  E-value=1.5e-21  Score=186.76  Aligned_cols=211  Identities=13%  Similarity=0.076  Sum_probs=149.7

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCC-cEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQ-RVAT  154 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~-~i~~  154 (363)
                      .+-..+..+++..|.       ..+++.+.+++.+...    ..|.+  ..+..++++++++++...      ++ +|++
T Consensus        13 ~~~~~~~~~~~~~g~-------~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~~------~~~~i~~   75 (393)
T 2huf_A           13 EPLVTPNKLLMGPGP-------SNAPQRVLDAMSRPIL----GHLHPETLKIMDDIKEGVRYLFQTN------NIATFCL   75 (393)
T ss_dssp             SCCCCCCCEECSSSC-------CCCCHHHHHHTTSCCC----CTTSHHHHHHHHHHHHHHHHHHTCC------CSEEEEE
T ss_pred             cccCCCCeEEecCCC-------CCCCHHHHHHHHhhhc----cCCCHHHHHHHHHHHHHHHHHhCCC------CCcEEEE
Confidence            333444667766553       3356677777544332    12422  356789999999997432      33 7877


Q ss_pred             EeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEE
Q 017967          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (363)
                        |.||+++++++  +..++.+||+|++++|+|..+  ...++..|++++.++++  .++.+|++.+++.+++.  ++++
T Consensus        76 --~~g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~--~~~~  147 (393)
T 2huf_A           76 --SASGHGGMEAT--LCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSK--VGQSLSLDEIRDALLIH--KPSV  147 (393)
T ss_dssp             --SSCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHH--CCSE
T ss_pred             --cCcHHHHHHHH--HHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCC--CCCCCCHHHHHHHHhcc--CCcE
Confidence              99999999998  444467999999999999874  34456789999999984  34679999999999741  3457


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccc-cccccc
Q 017967          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKN-LGLYAE  311 (363)
Q Consensus       233 ~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~-~~l~G~  311 (363)
                      +++++||||||.+++   +++|.++|+++|+++|+|+++. +....  .   .+    ......+++.|+||. +|++|+
T Consensus       148 v~~~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~-~~~~~--~---~~----~~~~~d~~~~s~sK~l~g~~G~  214 (393)
T 2huf_A          148 LFLTQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS-LGGAP--M---FM----DRWEIDAMYTGSQKVLGAPPGI  214 (393)
T ss_dssp             EEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT-BTTBC--C---CT----TTTTCSEEECCSSSTTCCCSSC
T ss_pred             EEEEccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc-cCCCC--c---ch----hhcCccEEEECCCcccccCCCe
Confidence            777999999999998   6778888999999999999964 22111  0   11    122456889999996 567887


Q ss_pred             cceEEEEeeCChhHHHHHHHHHHh
Q 017967          312 RIGAMNVVCSSSDLAARVKSQLKR  335 (363)
Q Consensus       312 RvG~i~~v~~~~~~~~~~~~~l~~  335 (363)
                        ||+  +++ ++    +++.+..
T Consensus       215 --G~~--~~~-~~----~~~~~~~  229 (393)
T 2huf_A          215 --TPV--SFS-HR----AVERYKR  229 (393)
T ss_dssp             --EEE--EEC-HH----HHHHHHT
T ss_pred             --EEE--EEC-HH----HHHHHhh
Confidence              999  665 66    4555543

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.86  E-value=3.8e-21  Score=185.49  Aligned_cols=205  Identities=12%  Similarity=-0.006  Sum_probs=143.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCC----CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEY----LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y----~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      .++||+.+.|.+..    ..+.+.+++.+.+...  ....|    +......++++++++++..        +..++  +
T Consensus        60 ~~ld~~s~~~l~~~----~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--------~~~i~--~  125 (409)
T 3kki_A           60 DDIILQSNDYLALA----NHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF--------DECLL--S  125 (409)
T ss_dssp             TSEECCCSCTTCCT----TCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC--------SEEEE--E
T ss_pred             ceEEeeccCccCCc----CCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC--------CeEEE--e
Confidence            68888876553221    2456666666655331  11122    2223456899999998632        22333  4


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcC
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~  237 (363)
                      .+|++++..+  +...+.+||.|+++.|+|..+...++..|++++.++.       .|++.+++.+.+.  +++++++++
T Consensus       126 ~sGt~a~~~~--l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~--~~~~vi~~~  194 (409)
T 3kki_A          126 QSGWNANVGL--LQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRH--GPGIIVVDS  194 (409)
T ss_dssp             SCHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHH--CSCEEEEES
T ss_pred             cchHHHHHHH--HHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhc--CCeEEEECC
Confidence            6667887766  4555789999999999999999999999999888764       5899999999852  346888899


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-CCeEEEEEcCccccccccccceEE
Q 017967          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       238 p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      |+||||.+++   +++|.++|+++|+++|+||+|.+..++..   ........+. .+..+++.||||.++.+   .||+
T Consensus       195 ~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~---g~~~~~~~~~~~~~di~~~s~sK~~~~~---gg~v  265 (409)
T 3kki_A          195 IYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPN---GAGLLAELGLTREVHFMTASLAKTFAYR---AGAI  265 (409)
T ss_dssp             BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG---GCCHHHHHTCGGGCSEEEEESSSTTCSS---CEEE
T ss_pred             CCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC---CCcchhhcCCCCCCCEEEeecchhhCCC---ceEE
Confidence            9999999998   77788889999999999999988554321   1111122121 23458899999999855   4988


Q ss_pred             EEeeCChhH
Q 017967          317 NVVCSSSDL  325 (363)
Q Consensus       317 ~~v~~~~~~  325 (363)
                        +++ ++.
T Consensus       266 --~~~-~~~  271 (409)
T 3kki_A          266 --WCN-NEV  271 (409)
T ss_dssp             --EES-SSG
T ss_pred             --EEC-HHH
Confidence              665 553

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.86  E-value=3.2e-21  Score=185.57  Aligned_cols=189  Identities=16%  Similarity=0.124  Sum_probs=138.7

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~  199 (363)
                      +..+..++|+++|+++..        +++++  +.+|++|++++  +. ++.+||+|+++.|.|.+...    .++..|+
T Consensus        53 ~~~~~~~lr~~la~~~g~--------~~~i~--~~sGt~a~~~a--l~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~  119 (393)
T 1n8p_A           53 QNPNRENLERAVAALENA--------QYGLA--FSSGSATTATI--LQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGV  119 (393)
T ss_dssp             CCHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHHHHHH--HH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred             CChhHHHHHHHHHHHhCC--------CcEEE--ECChHHHHHHH--HH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            456788999999999633        23444  56679999888  44 56799999999999985544    4567899


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhc----CCeEEEecCCCCCc
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK----NHIPFFDVAYQGFA  275 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~----~~~ii~De~y~~~~  275 (363)
                      +++.++.+       | +.++++++   ++++++++++||||||.+++   +++|.++|+++    |+++|+|++|..+.
T Consensus       120 ~v~~v~~~-------d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~  185 (393)
T 1n8p_A          120 ETSFTNDL-------L-NDLPQLIK---ENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPY  185 (393)
T ss_dssp             CCEEESSH-------H-HHHHHHSC---SSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHH
T ss_pred             EEEEeCCC-------h-HHHHHhcc---cCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccc
Confidence            99999863       6 78888876   35778888999999999997   66777789999    99999999998776


Q ss_pred             CCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccc-eEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhc
Q 017967          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLS  354 (363)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~  354 (363)
                      ..+    .      .+. ...+++.|+||.+|.+|+|+ ||+  ++.+++.++    .+....+......+...+.++..
T Consensus       186 ~~~----~------~~~-~~di~~~S~sK~~g~~G~rigG~~--~~~~~~~~~----~l~~~~~~~g~~~~~~~~~~~~~  248 (393)
T 1n8p_A          186 ISN----P------LNF-GADIVVHSATKYINGHSDVVLGVL--ATNNKPLYE----RLQFLQNAIGAIPSPFDAWLTHR  248 (393)
T ss_dssp             HCC----G------GGG-TCSEEEEETTTTTTCSSCCCCEEE--EESCHHHHH----HHHHHHHHHCCCCCHHHHHHHHH
T ss_pred             cCC----H------HHc-CCeEEEEECcccccCCCCceeEEE--EeCCHHHHH----HHHHHHHhcCCCCCHHHHHHHHh
Confidence            431    1      111 36789999999999999999 998  765566444    44333332233445555555443


Q ss_pred             cc
Q 017967          355 SM  356 (363)
Q Consensus       355 ~l  356 (363)
                      .+
T Consensus       249 ~l  250 (393)
T 1n8p_A          249 GL  250 (393)
T ss_dssp             HH
T ss_pred             cc
Confidence            33

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.86  E-value=5.5e-21  Score=183.78  Aligned_cols=204  Identities=14%  Similarity=-0.007  Sum_probs=148.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC---CCCCC----CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYL----PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~Y~----~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      +.+.|..+.+      +.+++.+.+++.+.+....   ...|.    ...+..++++++++++..      ++++|++  
T Consensus        26 ~~~~ld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--   91 (406)
T 3cai_A           26 GWVHFDAPAG------MLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNA------DPGGVVL--   91 (406)
T ss_dssp             SCEECBGGGC------CCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE--
T ss_pred             CeEEEeCCCc------CCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--
Confidence            4788887764      2346677777766653211   01232    245678999999999743      3578988  


Q ss_pred             ccchhHHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHhh----CCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcE
Q 017967          157 GLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFND----ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       157 t~ggt~al~l~~~l~~-~~~~gd~Vlv~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                      |.|+++++.++...+. .+.+||+|+++.|+|..+...+..    .|++++.++++ ++++.+|++.|++.++   ++++
T Consensus        92 ~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~l~---~~~~  167 (406)
T 3cai_A           92 GADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVD-IETGELPTWQWESLIS---KSTR  167 (406)
T ss_dssp             ESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCC-TTTCCCCGGGHHHHCC---TTEE
T ss_pred             eCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecC-cccCCcCHHHHHHHhC---CCce
Confidence            9999999988833221 157999999999999887555443    79999999984 2456789999999886   3577


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccc
Q 017967          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~  311 (363)
                      ++++++|+||||.+++   +++|.++|+++|+++|+|++|..-...   .   ....+    ...+++.|+||.+| ++ 
T Consensus       168 ~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~---~---~~~~~----~~d~~~~s~~K~~g-~~-  232 (406)
T 3cai_A          168 LVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPYRL---L---DIRET----DADVVTVNAHAWGG-PP-  232 (406)
T ss_dssp             EEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTTCC---C---CHHHH----CCSEEEEEGGGGTS-CS-
T ss_pred             EEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCCC---C---Cchhc----CCCEEEeehhhhcC-CC-
Confidence            8888999999999998   567788899999999999998742211   1   12221    35688999999876 54 


Q ss_pred             cce-EEEEeeCChh
Q 017967          312 RIG-AMNVVCSSSD  324 (363)
Q Consensus       312 RvG-~i~~v~~~~~  324 (363)
                       +| |+  +++ ++
T Consensus       233 -~G~~~--~~~-~~  242 (406)
T 3cai_A          233 -IGAMV--FRD-PS  242 (406)
T ss_dssp             -CEEEE--ESC-HH
T ss_pred             -cCeEE--EEe-hH
Confidence             99 88  665 55

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.86  E-value=7.9e-21  Score=181.95  Aligned_cols=190  Identities=11%  Similarity=0.046  Sum_probs=138.3

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCCC--cchHHHHHHHHHHHhcCCCCcccCC-cEEEEeccchhHHHHHHHHHHHHhCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQ-RVATVQGLSGTGSLRLAAALIERYFP  176 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~-~i~~~~t~ggt~al~l~~~l~~~~~~  176 (363)
                      ..+++.+.+++.+..    ...|.+.  ....++|+++++++...      ++ +|++  |.||++++.++  +..++.+
T Consensus        27 ~~~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~~~~------~~~~v~~--~~g~t~al~~~--~~~~~~~   92 (396)
T 2ch1_A           27 SNCSKRVLTAMTNTV----LSNFHAELFRTMDEVKDGLRYIFQTE------NRATMCV--SGSAHAGMEAM--LSNLLEE   92 (396)
T ss_dssp             CCCCHHHHHHTTSCC----CCTTCHHHHHHHHHHHHHHHHHHTCC------CSCEEEE--SSCHHHHHHHH--HHHHCCT
T ss_pred             CCCCHHHHHHhcccc----ccCCChhHHHHHHHHHHHHHHHhCCC------CCcEEEE--CCcHHHHHHHH--HHHhcCC
Confidence            345677777654322    1235442  23789999999997542      45 7877  99999999988  4444679


Q ss_pred             CCEEEEcCCCCcchH--HHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHH
Q 017967          177 GAKVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (363)
Q Consensus       177 gd~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i  254 (363)
                      ||+|++++|+|..+.  ..++..|++++.++++  .++.+|++.+++.+++.  +++++++++||||||.+++   +++|
T Consensus        93 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i  165 (396)
T 2ch1_A           93 GDRVLIAVNGIWAERAVEMSERYGADVRTIEGP--PDRPFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP---LEGV  165 (396)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTSCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTH
T ss_pred             CCeEEEEcCCcccHHHHHHHHHcCCceEEecCC--CCCCCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC---HHHH
Confidence            999999999999985  4778899999999984  35779999999999741  3557778999999999998   6678


Q ss_pred             HHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       255 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      .++|+++|+++|+||+|. +....  .   .+    ......+++.|++|.++ .+.++||+  +++ ++
T Consensus       166 ~~l~~~~~~~li~Dea~~-~g~~~--~---~~----~~~~~d~~~~s~~K~~~-~~~g~g~~--~~~-~~  221 (396)
T 2ch1_A          166 GQICHQHDCLLIVDAVAS-LCGVP--F---YM----DKWEIDAVYTGAQKVLG-APPGITPI--SIS-PK  221 (396)
T ss_dssp             HHHHHHTTCEEEEECTTT-BTTBC--C---CT----TTTTCCEEECCCC-CCC-CCSSCEEE--EEC-HH
T ss_pred             HHHHHHcCCEEEEEcccc-ccCCc--c---ch----hhcCcCEEEEcCCcccc-CCCCeEEE--EEC-HH
Confidence            888999999999999987 32111  0   11    11122356689999775 44567998  665 55

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.86  E-value=2.2e-21  Score=182.62  Aligned_cols=222  Identities=14%  Similarity=0.017  Sum_probs=149.1

Q ss_pred             CccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCC
Q 017967           99 QPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA  178 (363)
Q Consensus        99 ~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd  178 (363)
                      +..+++.+.+++.+.... . ..|....+..++|+++++++..      +++++++  |.||+++++++  +..++.+||
T Consensus         9 p~~~~~~v~~a~~~~~~~-~-~~~~~~~~~~~l~~~la~~~g~------~~~~i~~--~~g~t~a~~~~--~~~~~~~gd   76 (352)
T 1iug_A            9 PVRLHPKALEALARPQLH-H-RTEAAREVFLKARGLLREAFRT------EGEVLIL--TGSGTLAMEAL--VKNLFAPGE   76 (352)
T ss_dssp             SCCCCHHHHHHHHSCCCC-T-TSHHHHHHHHHHHHHHHHHHTC------SSEEEEE--ESCHHHHHHHH--HHHHCCTTC
T ss_pred             CCCCCHHHHHHhccCCCC-c-cCHHHHHHHHHHHHHHHHHhCC------CCceEEE--cCchHHHHHHH--HHhccCCCC
Confidence            344567888877654421 1 1121234678999999999743      2578877  99999999988  444467999


Q ss_pred             EEEEcCCCCcchH--HHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHH
Q 017967          179 KVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (363)
Q Consensus       179 ~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~  256 (363)
                      +|+++.|+|+.+.  ..++..|++++.++++  .++.+|++.+++      ++++++++++||||||.+++   +++|.+
T Consensus        77 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~~---l~~i~~  145 (352)
T 1iug_A           77 RVLVPVYGKFSERFYEIALEAGLVVERLDYP--YGDTPRPEDVAK------EGYAGLLLVHSETSTGALAD---LPALAR  145 (352)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCTTTSCC------SSCSEEEEESEETTTTEECC---HHHHHH
T ss_pred             eEEEEeCCchhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHhc------cCCcEEEEEEecCCcceecC---HHHHHH
Confidence            9999999998865  4556789999999984  345688888876      23557788999999999998   567788


Q ss_pred             HHHhc--CCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcc-ccccccccceEEEEeeCChhHHHH-----
Q 017967          257 VIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK-NLGLYAERIGAMNVVCSSSDLAAR-----  328 (363)
Q Consensus       257 ~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~l~G~RvG~i~~v~~~~~~~~~-----  328 (363)
                      +|+++  |+++|+||+|..... .  .+   .    ......+++.|+|| .++.+|  +||+  +++ ++.+++     
T Consensus       146 l~~~~~~~~~li~D~a~~~~~~-~--~~---~----~~~~~d~~~~s~~K~~~~~~g--~G~~--~~~-~~~~~~~~~~~  210 (352)
T 1iug_A          146 AFKEKNPEGLVGADMVTSLLVG-E--VA---L----EAMGVDAAASGSQKGLMCPPG--LGFV--ALS-PRALERLKPRG  210 (352)
T ss_dssp             HHHHHCTTCEEEEECTTTBTTB-C--CC---S----GGGTCSEEEEESSSTTCCCSC--EEEE--EEC-HHHHHTCCCCS
T ss_pred             HHHhhCCCCEEEEECCccccCc-c--ee---c----cccCeeEEEecCcccccCCCc--eeEE--EEC-HHHHHHhhCCC
Confidence            89999  999999999862111 0  01   1    11134578999999 454334  7999  665 553333     


Q ss_pred             ----HHHHHHhh-hccccCCCchHHHHHHhccccc
Q 017967          329 ----VKSQLKRL-ARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       329 ----~~~~l~~~-~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                          +...+... ......+++...+.++...|+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  245 (352)
T 1iug_A          211 YYLDLARELKAQKEGESAWTPAINLVLAVAAVLEE  245 (352)
T ss_dssp             STTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH
T ss_pred             ceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHH
Confidence                22111111 1223345667777666555544

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.86  E-value=4.9e-21  Score=183.09  Aligned_cols=221  Identities=14%  Similarity=0.081  Sum_probs=149.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      +++|++.|.+     ++.+++.+.+++.         .|..   ...+.+.+++++....+.. +++++++  +.||+++
T Consensus        29 ~v~~~~~~~~-----~~~~~~~v~~a~~---------~~~~---~~~~~~~~~~~~a~~~g~~-~~~~~~~--~~ggt~a   88 (374)
T 2aeu_A           29 ALYDLSGLSG-----GFLIDEKDKALLN---------TYIG---SSYFAEKVNEYGLKHLGGD-ENDKCVG--FNRTSSA   88 (374)
T ss_dssp             GCEECSSCCC-----CCCCCHHHHHHHT---------STTH---HHHHHHHHHHHHHHHHTCC-TTEEEEE--ESSHHHH
T ss_pred             ceeeecccCC-----CCCCCHHHHHHHH---------HhcC---chHHHHHHHHHHHHHhCCC-CcceEEE--EcChHHH
Confidence            4789988764     2456777777753         1211   1233344443332212221 2467877  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEE-EEEcCCC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI-LLHGCAH  239 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~-~~i~~p~  239 (363)
                      +.++.  . .+ +||+|+++.|+|.++..   .++..|++++.+         .|++.+++. +   +++++ +++++||
T Consensus        89 ~~~~~--~-~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~---~~~~~~v~~~~p~  151 (374)
T 2aeu_A           89 ILATI--L-AL-KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-I---DKDTLVIITGSTM  151 (374)
T ss_dssp             HHHHH--H-HH-CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-C---CTTEEEEEECBCT
T ss_pred             HHHHH--H-hC-CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-C---CCccEEEEEccCC
Confidence            98883  3 34 99999999998877544   567889988877         278888876 3   34667 8889999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEe
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      ||||.  +..++++|.++|+++|+++|+||+|..+..+.. . ..+..   .. ...++++||||.+  +|+|+||+  +
T Consensus       152 nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~-~~~~~---~~-~~di~~~S~sK~l--~g~~~G~~--~  219 (374)
T 2aeu_A          152 DLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLF-N-QPPAL---KL-GADLVVTSTDKLM--EGPRGGLL--A  219 (374)
T ss_dssp             TSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT-T-CCCHH---HH-TCSEEEEETTSSS--SSCSCEEE--E
T ss_pred             CCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccc-c-cCCcc---cc-CCcEEEecCcccc--cCcceEEE--E
Confidence            99998  789999999999999999999999877641000 0 00011   11 2358889999985  58999999  6


Q ss_pred             eCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          320 CSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++ ++    +++.++........+++.+.|.++...|+.
T Consensus       220 ~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~al~~  253 (374)
T 2aeu_A          220 GK-KE----LVDKIYIEGTKFGLEAQPPLLAGIYRALKN  253 (374)
T ss_dssp             EE-HH----HHHHHHHHHHTTTCBCCHHHHHHHHHHHHH
T ss_pred             EC-HH----HHHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence            65 66    455555444333446788888887766543

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.86  E-value=1.1e-20  Score=183.38  Aligned_cols=200  Identities=18%  Similarity=0.075  Sum_probs=151.2

Q ss_pred             EeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC-CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHH
Q 017967           87 NLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (363)
Q Consensus        87 ~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (363)
                      +|+.|.|.     ...++.+.+++.+.+...   .|.+ ..+..+||+++++++..        +++++  |.||+++++
T Consensus        20 ~l~~~~p~-----~~~p~~~~~a~~~~~~~~---~y~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~   81 (424)
T 2po3_A           20 PLLVGRPN-----RIDRARLYERLDRALDSQ---WLSNGGPLVREFEERVAGLAGV--------RHAVA--TCNATAGLQ   81 (424)
T ss_dssp             CEETTCCC-----CCCHHHHHHHHHHHHHHT---CCSSSCHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHH
T ss_pred             cccccCCC-----CCChHHHHHHHHHHHhcC---CcccCCHHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHH
Confidence            68888762     112466777776666442   4766 68999999999999732        47877  999999999


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCC
Q 017967          166 LAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID  245 (363)
Q Consensus       166 l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~  245 (363)
                      ++...   +.+||+|++++|+|..+...++..|++++.+++++ +++.+|++.+++.+++   ++++++++   ||||..
T Consensus        82 ~~l~~---l~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~---~~~~v~~~---~~tG~~  151 (424)
T 2po3_A           82 LLAHA---AGLTGEVIMPSMTFAATPHALRWIGLTPVFADIDP-DTGNLDPDQVAAAVTP---RTSAVVGV---HLWGRP  151 (424)
T ss_dssp             HHHHH---HTCCSEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTSSBCHHHHGGGCCT---TEEEEEEE---CGGGCC
T ss_pred             HHHHH---cCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhhCc---CCcEEEEE---CCCCCc
Confidence            88433   34899999999999999999999999999999853 4678999999988763   45566653   489986


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEecCCC-CCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          246 PTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       246 ~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      .   ++++|.++|+++|+++|+||+|. ++.+++.     ++    ....+ +++.||||..+++|+|+||+  ++++++
T Consensus       152 ~---~l~~i~~la~~~~~~li~Dea~~~g~~~~~~-----~~----~~~~d-i~~~S~sk~K~l~~~~~G~~--v~~~~~  216 (424)
T 2po3_A          152 C---AADQLRKVADEHGLRLYFDAAHALGCAVDGR-----PA----GSLGD-AEVFSFHATKAVNAFEGGAV--VTDDAD  216 (424)
T ss_dssp             C---CHHHHHHHHHHTTCEEEEECTTCTTCEETTE-----ET----TSSSS-EEEEECCTTSSSCCSSCEEE--EESCHH
T ss_pred             C---CHHHHHHHHHHcCCEEEEECccccCCeECCe-----ec----ccccC-EEEEeCCCCCCccCCCCeEE--EeCCHH
Confidence            4   67778888999999999999998 5765421     11    11123 88999996667778999999  787677


Q ss_pred             HHHHH
Q 017967          325 LAARV  329 (363)
Q Consensus       325 ~~~~~  329 (363)
                      .++++
T Consensus       217 l~~~l  221 (424)
T 2po3_A          217 LAARI  221 (424)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            43333

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.86  E-value=1.2e-20  Score=179.50  Aligned_cols=198  Identities=15%  Similarity=0.046  Sum_probs=144.2

Q ss_pred             CCCCCccccHHHHHHHHHHHccC--CCC-CCCC----CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHH
Q 017967           95 TEELQPYVLDVVKKAENLMLERG--ENK-EYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA  167 (363)
Q Consensus        95 ~~~~~~~~~~~v~~a~~~~~~~~--~~~-~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~  167 (363)
                      |..+...+++.+.+++.+.+...  ... .|..    ..+..++++++++++..      +++++++  |.||++|+.++
T Consensus         5 d~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--~~g~t~a~~~~   76 (382)
T 4eb5_A            5 DYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNG------GGGTVVF--TSGATEANNLA   76 (382)
T ss_dssp             BTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTC------TTEEEEE--ESSHHHHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--cCchHHHHHHH
Confidence            33444567788888887766431  101 1422    24678899999999742      2568877  99999999998


Q ss_pred             HHHHHH--hCCCCEEEEcCCCCcchHHHHh---hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          168 AALIER--YFPGAKVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       168 ~~l~~~--~~~gd~Vlv~~P~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ...+..  ..+||.|++++|+|+.+...+.   ..|++++.++++  .++.+|++.+++.+++   +++++++++|+|||
T Consensus        77 ~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~npt  151 (382)
T 4eb5_A           77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLRD---DTILVSVQHANNEI  151 (382)
T ss_dssp             HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBC--TTSCBCHHHHHHHCCT---TEEEEECCSBCTTT
T ss_pred             HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccC--CCCccCHHHHHHHhcC---CCeEEEEeccCCCc
Confidence            443321  1699999999999998876654   479999999984  3567999999998863   46788899999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++   +++|.++|+++|++ |+|++|. +....     ..+..+    +..+++.||||.+|.+|  +||+  ++++
T Consensus       152 G~~~~---l~~i~~l~~~~~~~-i~D~a~~-~g~~~-----~~~~~~----~~di~~~s~sK~~g~~g--~G~~--~~~~  213 (382)
T 4eb5_A          152 GTIQP---VEEISEVLAGKAAL-HIDATAS-VGQIE-----VDVEKI----GADMLTISSNDIYGPKG--VGAL--WIRK  213 (382)
T ss_dssp             CBBCC---HHHHHHHHTTSSEE-EEECTTT-BTTBC-----CCHHHH----TCSEEEEETGGGTCCSS--CEEE--EEET
T ss_pred             cccCC---HHHHHHHHHHCCCE-EEEcchh-cCCcc-----cCcccc----CCCEEEeehHHhcCCCc--eEEE--EEcc
Confidence            99998   46788889999999 9999987 22110     112211    35688999999988666  6998  6654


Q ss_pred             h
Q 017967          323 S  323 (363)
Q Consensus       323 ~  323 (363)
                      +
T Consensus       214 ~  214 (382)
T 4eb5_A          214 E  214 (382)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.86  E-value=2.9e-21  Score=183.84  Aligned_cols=199  Identities=15%  Similarity=0.025  Sum_probs=143.4

Q ss_pred             CccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCC
Q 017967           99 QPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA  178 (363)
Q Consensus        99 ~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd  178 (363)
                      +..+++.+.+++.+.... . ..+.......++++++++++...    .++++|++  |.||++++. +  +..++.+||
T Consensus        10 p~~~~~~v~~a~~~~~~~-~-~~~~~~~~~~~~~~~la~~~~~~----~~~~~v~~--~~g~t~al~-~--~~~~~~~gd   78 (384)
T 3zrp_A           10 PTTIKEDVLVAGLENNVG-F-TSKEFVEALAYSLKGLRYVMGAS----KNYQPLII--PGGGTSAME-S--VTSLLKPND   78 (384)
T ss_dssp             CSCCCHHHHHHTTCCSCC-T-TSHHHHHHHHHHHHHHHHHHTCC----TTSEEEEE--ESCHHHHHH-H--GGGGCCTTC
T ss_pred             CCCCCHHHHHHhhccccc-c-ccHHHHHHHHHHHHHHHHHhCCC----CCCcEEEE--cCCcHHHHH-H--HHhhcCCCC
Confidence            344567777765432211 0 11112345678889999986432    12277877  999999998 6  445577999


Q ss_pred             EEEEcCCCCcc--hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHH
Q 017967          179 KVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (363)
Q Consensus       179 ~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~  256 (363)
                      +|++++|+|..  +...++..|++++.++++  .++.+|++.+++.+++  .+++++++++||||||.+++   +++|.+
T Consensus        79 ~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~  151 (384)
T 3zrp_A           79 KILVVSNGVFGDRWEQIFKRYPVNVKVLRPS--PGDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVREP---VKDVIN  151 (384)
T ss_dssp             EEEEECSSHHHHHHHHHHTTSSCEEEEECCS--TTCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEECC---HHHHHH
T ss_pred             EEEEecCCcchHHHHHHHHHcCCcEEEecCC--CCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceECc---HHHHHH
Confidence            99999999955  666778899999999984  3567999999999985  24778888999999999998   566888


Q ss_pred             HHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHH
Q 017967          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       257 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      +|+++|+++|+|++|.......      .    .......+++.|+||.++ .+.++||+  +++ ++.++++
T Consensus       152 l~~~~~~~li~D~a~~~~~~~~------~----~~~~~~d~~~~s~~K~~~-~~~g~g~~--~~~-~~~~~~~  210 (384)
T 3zrp_A          152 KIRKYVELIVVDGVSSVGAEEV------K----AEEWNVDVYLTASQKALG-SAAGLGLL--LLS-PKALSIL  210 (384)
T ss_dssp             HHGGGEEEEEEECTTTTTTSCC------C----TTTTTCSEEEEETTSTTC-CCSSEEEE--EEC-HHHHHHH
T ss_pred             HHHhcCCEEEEECcccccCccc------c----ccccCCCEEEecCccccc-CCCceEEE--EEC-HHHHHHh
Confidence            8999999999999976443210      0    112245688999999885 34558999  665 6654444

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.86  E-value=3e-21  Score=184.99  Aligned_cols=238  Identities=12%  Similarity=0.106  Sum_probs=161.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|++.+.+...-+.  ..+.+.+++.+...... ...+.+..-..++++.+++++.        .+++++  ++||++
T Consensus        37 ~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~v~~--~~~gt~  104 (392)
T 3ruy_A           37 RYMDLLSAYSAVNQGH--RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN--------KEMVLP--MNTGAE  104 (392)
T ss_dssp             EEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT--------CSEEEE--ESSHHH
T ss_pred             EEEEcCCChhhhccCC--CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--------CCEEEE--eCcHHH
Confidence            6889988754322222  35677777776654321 1111234456788888888852        378888  999999


Q ss_pred             HHHHHHHHHHHh--------CCCCEEEEcCCCCcchHHHHhhCCC-------------CeEEEecccCCCCCCCHHHHHH
Q 017967          163 SLRLAAALIERY--------FPGAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       163 al~l~~~l~~~~--------~~gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      |++++..++...        ..||+|++..|+|.++...+...+.             .+..++.       .|++.+++
T Consensus       105 a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~  177 (392)
T 3ruy_A          105 AVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKA  177 (392)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHHH
Confidence            999885543322        2368999999999776554443322             1333332       27999999


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHHH-HHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEE
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQ-WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~~-~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  300 (363)
                      +++   ++++++++++||||||.+++.++ +++|.++|+++|+++|+||+|.+|...+.   ..... ..+...+++   
T Consensus       178 ~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~~-~~~~~~d~~---  247 (392)
T 3ruy_A          178 AIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK---VFACD-WDNVTPDMY---  247 (392)
T ss_dssp             HCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS---SSGGG-GGTCCCSEE---
T ss_pred             Hhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc---chhhh-ccCCCCCEE---
Confidence            886   45788888999999999996655 99999999999999999999988866432   11111 112223443   


Q ss_pred             cCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          301 SYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       301 S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +|||.++ +| +|+||+  +++ ++    +++.+........++.+.++|.++...|+.
T Consensus       248 ~~SK~l~-gG~~~~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  298 (392)
T 3ruy_A          248 ILGKALG-GGVFPISCA--AAN-RD----ILGVFEPGSHGSTFGGNPLACAVSIAALEV  298 (392)
T ss_dssp             EECGGGG-TTTSCCEEE--EEC-HH----HHTTCCTTSSCCSSTTCHHHHHHHHHHHHH
T ss_pred             EEchhhh-CChhhhEEE--EEC-HH----HHhhhccCCcCCCCCCCHHHHHHHHHHHHH
Confidence            7789876 46 999999  665 55    555555554555668889999988776653

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.86  E-value=7.1e-21  Score=182.55  Aligned_cols=245  Identities=15%  Similarity=0.106  Sum_probs=159.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|++.|.+...-+  +.++.+.+++.+.+....  ...| +.....++++++++++.      ..+++|++  |.||+
T Consensus        46 ~~ld~~~~~~~~~~g--~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~------~~~~~v~~--~~gg~  114 (395)
T 1vef_A           46 EYIDCVGGYGVANLG--HGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAILP------PELNRVFP--VNSGT  114 (395)
T ss_dssp             EEEESSHHHHTCTTC--BTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTSC------TTEEEEEE--ESSHH
T ss_pred             EEEEccCccccccCC--CCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhcC------CCcCEEEE--cCcHH
Confidence            578998886422222  246677777766653311  1124 45566788888887742      13578877  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHHhhCCCCeEE---EecccCCC--CCCCHHHHHHHHHcCCCCcEEEEE
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFNDARVPWSE---YRYYDPKT--VGLDFEGMIADIKAAPGGSFILLH  235 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~-~~~~~~~~G~~~~~---v~~~~~~~--~~~d~~~l~~~l~~~~~~~~~~~i  235 (363)
                      +|+.++...+..+.+||.|++.+|+|.. +...+...|.+.+.   +|+..+..  ...|++.+++.++   ++++++++
T Consensus       115 ~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~---~~~~~v~~  191 (395)
T 1vef_A          115 EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD---EETAAVIL  191 (395)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCC---TTEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhc---cCEEEEEE
Confidence            9999885433223578999999999965 44566666765221   11100000  0248999999886   34667766


Q ss_pred             cCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccce
Q 017967          236 GCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (363)
Q Consensus       236 ~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG  314 (363)
                      +.++||||..+ +.+++++|.++|+++|+++|+||+|.++...+.   ...+. ......+++   ||||.++. |+|+|
T Consensus       192 ~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~---~~~~~-~~~~~~d~~---s~sK~~~~-g~~~G  263 (395)
T 1vef_A          192 EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK---RFAFE-HFGIVPDIL---TLAKALGG-GVPLG  263 (395)
T ss_dssp             CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHH-HHTCCCSEE---EECGGGGT-TSSCE
T ss_pred             eCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc---hhHhh-hcCCCCCEE---EEcccccC-CCceE
Confidence            66689999865 788899999999999999999999998754321   11121 123233443   88999995 99999


Q ss_pred             EEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          315 AMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       315 ~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |+  +++ ++    +++.+.........+++.++|.++...|+
T Consensus       264 ~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~~a~~~al~  299 (395)
T 1vef_A          264 VA--VMR-EE----VARSMPKGGHGTTFGGNPLAMAAGVAAIR  299 (395)
T ss_dssp             EE--EEE-HH----HHHTSCTTSSCCSSTTCHHHHHHHHHHHH
T ss_pred             EE--Eeh-HH----HHhhhccCCcCCCcCCCHHHHHHHHHHHH
Confidence            99  765 44    44444332223344678888877765554

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.85  E-value=1.8e-21  Score=183.89  Aligned_cols=202  Identities=14%  Similarity=0.022  Sum_probs=143.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC-C-cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-I-EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-~-~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      ++++|+.| |.      ..++.+.+++.+.    ..+.|.. . .+..++|+++++++. .   +.+++++++  |.||+
T Consensus         4 ~~~~~~~g-p~------~~~~~v~~a~~~~----~~~~~~~~~~~~~~~l~~~la~~~g-~---~~~~~~v~~--~~g~t   66 (366)
T 1m32_A            4 NYLLLTPG-PL------TTSRTVKEAMLFD----SCTWDDDYNIGVVEQIRQQLTALAT-A---SEGYTSVLL--QGSGS   66 (366)
T ss_dssp             -CEECSSS-SC------CCCHHHHHTTCCC----CCTTSHHHHTTTHHHHHHHHHHHHC-S---SSSEEEEEE--ESCHH
T ss_pred             ccccccCC-Cc------CCCHHHHHHHhhh----hcCCCHHHHHHHHHHHHHHHHHHhC-C---CCcCcEEEE--ecChH
Confidence            36788877 31      2456677665332    1122211 1 678999999999974 2   122357877  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcC-CCCcc-hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISS-PTWGN-HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~-P~y~~-~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~  239 (363)
                      ++++++  +..++.+||+|++.+ ++|+. +...++..|++++.++++  .++.+|++.+++.+++.+ +++++++++|+
T Consensus        67 ~a~~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~  141 (366)
T 1m32_A           67 YAVEAV--LGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCG--EVARPDVQAIDAILNADP-TISHIAMVHSE  141 (366)
T ss_dssp             HHHHHH--HHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECC--TTSCCCHHHHHHHHHHCT-TCCEEEEESEE
T ss_pred             HHHHHH--HHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCC-CeEEEEEeccc
Confidence            999988  344457999988776 56654 667778889999999984  356799999999998632 35567789999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEe
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      ||||.+++   +++|.++|+++|+++|+||+|...... .     .+    ......+++.|+||.++ .+.++||+  +
T Consensus       142 nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~-----~~----~~~~~di~~~s~~K~~~-~~~g~G~~--~  205 (366)
T 1m32_A          142 TTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIP-M-----DI----AALHIDYLISSANKCIQ-GVPGFAFV--I  205 (366)
T ss_dssp             TTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C-----CT----TTTTCSEEEEESSSTTC-CCSSEEEE--E
T ss_pred             CCcceecC---HHHHHHHHHHcCCEEEEECCccccCcC-c-----cc----cccCccEEEecCccccc-CCCceEEE--E
Confidence            99999998   567888899999999999998754321 0     11    12235688999999774 23457999  6


Q ss_pred             eCChh
Q 017967          320 CSSSD  324 (363)
Q Consensus       320 ~~~~~  324 (363)
                      ++ ++
T Consensus       206 ~~-~~  209 (366)
T 1m32_A          206 AR-EQ  209 (366)
T ss_dssp             EE-HH
T ss_pred             EC-HH
Confidence            65 55

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.85  E-value=2.4e-20  Score=182.96  Aligned_cols=220  Identities=10%  Similarity=0.069  Sum_probs=150.9

Q ss_pred             CcEEeecccc-CCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAY-RTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~-~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      +.++|+.|.. .|..... ..+.+.++..+.+.... ..|.+..+..+|++++++++..        +++++  |+||++
T Consensus        35 ~~~~~~~g~~ylD~~~~~-~~~~v~~a~~~~~~~~~-~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~ggt~  102 (467)
T 1ax4_A           35 NPFLLPSSAVYIDLLTDS-GTNAMSDHQWAAMITGD-EAYAGSRNYYDLKDKAKELFNY--------DYIIP--AHQGRG  102 (467)
T ss_dssp             CGGGSCGGGCSEECSCSS-SCCCEEHHHHHHHHTCC-CCSSSCHHHHHHHHHHHHHHCC--------CEEEE--ESSHHH
T ss_pred             CcccCCCCceeeecccCc-CCHHHHHHHHHHHhhcc-cccccCccHHHHHHHHHHHcCC--------CcEEE--cCCcHH
Confidence            5566666652 2221111 11444444444433333 4688888999999999999732        57877  999999


Q ss_pred             HHHHHHHHHHHhC----CCCE---EEEcCCCCcchHHHHhhCCCCeEEEeccc---C-----CCCCCCHHHHHHHHHcCC
Q 017967          163 SLRLAAALIERYF----PGAK---VLISSPTWGNHKNIFNDARVPWSEYRYYD---P-----KTVGLDFEGMIADIKAAP  227 (363)
Q Consensus       163 al~l~~~l~~~~~----~gd~---Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~---~-----~~~~~d~~~l~~~l~~~~  227 (363)
                      |++++..  ..+.    +||.   |+++.+.|..+...+...|.+++.++...   .     .++.+|++.|++++++..
T Consensus       103 A~~~al~--~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~  180 (467)
T 1ax4_A          103 AENILFP--VLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG  180 (467)
T ss_dssp             HHHHHHH--HHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC
T ss_pred             HHHHHHH--HHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC
Confidence            9998844  3455    8998   99998888888888888999888776431   1     135689999999997421


Q ss_pred             -CCcEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHhcCCeEEEecCCCC----------CcCCCCCCchhHHHHHH----h
Q 017967          228 -GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG----------FASGSLDNDASSVRLFA----T  291 (363)
Q Consensus       228 -~~~~~~~i~~p~NPT-G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~----------~~~~~~~~~~~~~~~~~----~  291 (363)
                       ++++++++++||||| |.+++.+++++|+++|++||+++|+|+++..          ..+.+.     ++..+.    .
T Consensus       181 ~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  255 (467)
T 1ax4_A          181 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA-----TIKEVIFDMYK  255 (467)
T ss_dssp             GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC-----CHHHHHHHHGG
T ss_pred             CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC-----chhhhhhhhcc
Confidence             247788889999999 8999999999999999999999999998432          012211     121221    1


Q ss_pred             cCCeEEEEEcCccccccccccc-eEEEEeeCCh-hHHHHH
Q 017967          292 RGMELLVAQSYSKNLGLYAERI-GAMNVVCSSS-DLAARV  329 (363)
Q Consensus       292 ~~~~vi~~~S~SK~~~l~G~Rv-G~i~~v~~~~-~~~~~~  329 (363)
                      .. + +++.|+||.+|++   + ||+  +++++ +.++++
T Consensus       256 ~~-d-~~~~s~sK~~g~~---~Gg~~--~~~d~~~l~~~~  288 (467)
T 1ax4_A          256 YA-D-ALTMSAKKDPLLN---IGGLV--AIRDNEEIFTLA  288 (467)
T ss_dssp             GC-S-EEEEETTSTTCCS---SCEEE--EESSCHHHHHHH
T ss_pred             cc-c-eEEEeccccCCCC---cceEE--EeCCHHHHHHHH
Confidence            22 2 4568999998765   4 555  55656 644444

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.85  E-value=2e-20  Score=179.04  Aligned_cols=190  Identities=17%  Similarity=0.128  Sum_probs=144.5

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGA  178 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd  178 (363)
                      |.+.+.+.+++.+.+.... ..|.+..+..++|+++++++..       ++.|++  ++ |++|++++  +..+ +.+||
T Consensus        13 p~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~la~~~~~-------~~~i~~--~s-Gt~al~~~--l~~l~~~~gd   79 (388)
T 1b9h_A           13 PQYDDAERNGLVRALEQGQ-WWRMGGDEVNSFEREFAAHHGA-------AHALAV--TN-GTHALELA--LQVMGVGPGT   79 (388)
T ss_dssp             SCCCHHHHHHHHHHHHTSC-CBTTTCSHHHHHHHHHHHHTTC-------SEEEEE--SC-HHHHHHHH--HHHTTCCTTC
T ss_pred             CCCCHHHHHHHHHHHHcCC-eeecCCHHHHHHHHHHHHHhCC-------CeEEEe--CC-HHHHHHHH--HHHcCCCCcC
Confidence            3445788888877775432 4677788999999999999633       245555  55 49999888  4444 56999


Q ss_pred             EEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHH
Q 017967          179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (363)
Q Consensus       179 ~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~  258 (363)
                      +|+++.|+|..+...++..|++++.+++++ +++++|++.+++.++   +++++++   |+||||.+.+   +++|.++|
T Consensus        80 ~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~i~---~~~~~v~---~~n~tG~~~~---l~~i~~la  149 (388)
T 1b9h_A           80 EVIVPAFTFISSSQAAQRLGAVTVPVDVDA-ATYNLDPEAVAAAVT---PRTKVIM---PVHMAGLMAD---MDALAKIS  149 (388)
T ss_dssp             EEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCC---TTEEEEC---CBCGGGCCCC---HHHHHHHH
T ss_pred             EEEECCCccHHHHHHHHHcCCEEEEEecCC-CcCCCCHHHHHHhcC---cCceEEE---EeCCccCcCC---HHHHHHHH
Confidence            999999999999999999999999999853 357899999999886   2455554   8999999975   56677779


Q ss_pred             HhcCCeEEEecCCCC-CcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          259 QEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       259 ~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      +++|+++|+|++|.. ..+.+.     .+    ... .++.+.||||..+++|.|+||+  +++++.
T Consensus       150 ~~~~~~li~D~a~~~g~~~~~~-----~~----~~~-~~i~~~S~s~~K~l~g~~~G~~--~~~~~~  204 (388)
T 1b9h_A          150 ADTGVPLLQDAAHAHGARWQGK-----RV----GEL-DSIATFSFQNGKLMTAGEGGAV--VFPDGE  204 (388)
T ss_dssp             HHHTCCBCEECTTCTTCEETTE-----EG----GGS-SSCEEEECCTTSSSCSSSCEEE--EECTTC
T ss_pred             HHcCCEEEEecchhcCCccCCe-----ec----ccc-cceEEEEccCCCcccCCCeEEE--EECCHH
Confidence            999999999999986 333211     11    111 2688999998777778899999  777554

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.85  E-value=8.1e-21  Score=177.82  Aligned_cols=185  Identities=14%  Similarity=0.064  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEEEe
Q 017967          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSEYR  205 (363)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v~  205 (363)
                      +|++++|+++..       ++.++   +.+|+++++++  +..++.+||+|+++.|+|..+...+    +..|++++.++
T Consensus         2 ~l~~~la~~~g~-------~~~i~---~~sG~~a~~~~--~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   69 (331)
T 1pff_A            2 ALEGKIAKLEHA-------EACAA---TASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID   69 (331)
T ss_dssp             HHHHHHHHHHTC-------SEEEE---ESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             hHHHHHHHHhCC-------CeEEE---eCChHHHHHHH--HHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence            689999999743       23443   45568998888  3344679999999999999987765    45899998887


Q ss_pred             cccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHh-cCCeEEEecCCCCCcCCCCCCchh
Q 017967          206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE-KNHIPFFDVAYQGFASGSLDNDAS  284 (363)
Q Consensus       206 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~  284 (363)
                      .       .|++.+++.++   ++++++++++||||||.+++   +++|.++|++ +|+++|+||+|.......      
T Consensus        70 ~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~------  130 (331)
T 1pff_A           70 M-------AVPGNIEKHLK---PNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN------  130 (331)
T ss_dssp             T-------TSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC------
T ss_pred             C-------CCHHHHHHhhc---CCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC------
Confidence            5       36788888776   35678888999999999996   6778888999 999999999998654321      


Q ss_pred             HHHHHHhcCCeEEEEEcCcccccccccc-ceEEEEeeCChhHHHHHHHHHHhhhcc-ccCCCchHHHHHHhccc
Q 017967          285 SVRLFATRGMELLVAQSYSKNLGLYAER-IGAMNVVCSSSDLAARVKSQLKRLARP-MYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       285 ~~~~~~~~~~~vi~~~S~SK~~~l~G~R-vG~i~~v~~~~~~~~~~~~~l~~~~~~-~~~~~s~~~q~~~~~~l  356 (363)
                      +.    + .+..+++.|+||.++.+|.| +||+  ++++++    +++.++..... ...+.+.+.|.++...+
T Consensus       131 ~~----~-~~~d~~~~s~~K~~~~~~~r~~G~~--~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  193 (331)
T 1pff_A          131 PL----D-LGVDIVVHSATKYINGHTDVVAGLV--CSRADI----IAKVKSQGIKDITGAIISPHDAWLITRGT  193 (331)
T ss_dssp             GG----G-GTCSEEEEETTTTTSSSSSCCCEEE--EECHHH----HHHHHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred             hh----h-cCCcEEEEECccccCCCCCceEEEE--EeCcHH----HHHHHHHHHHhhcCCCCCHHHHHHHHcCc
Confidence            11    1 24679999999999999999 7999  776426    56667665544 44567777777654443

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.85  E-value=8.9e-21  Score=184.04  Aligned_cols=202  Identities=19%  Similarity=0.142  Sum_probs=133.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCC---------cchHHHHHHHHHHHhcCCCCcccCCcEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---------EGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---------~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      +.+.|..+.+      ..+++.+.+++.+.+...  ..|+..         ....++|+++++++..      ++++|++
T Consensus        18 ~~~~Ld~~~~------~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~   83 (432)
T 3a9z_A           18 RKVYMDYNAT------TPLEPEVIQAVTEAMKEA--WGNPSSSYVAGRKAKDIINTARASLAKMIGG------KPQDIIF   83 (432)
T ss_dssp             CCEECBTTTC------CCCCHHHHHHHHHHHHHC--CSCTTCSSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE
T ss_pred             CcEEeeCCcc------CCCCHHHHHHHHHHHHHh--cCCCccCcHHHHHHHHHHHHHHHHHHHHcCC------CcCeEEE
Confidence            6778877664      245677777777665331  233221         1246899999999732      3578988


Q ss_pred             EeccchhHHHHHHHHHHHH------hCCCCEEEEcCCCCcch-----------------HHHHhhCCCCeEEEecccCCC
Q 017967          155 VQGLSGTGSLRLAAALIER------YFPGAKVLISSPTWGNH-----------------KNIFNDARVPWSEYRYYDPKT  211 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~------~~~gd~Vlv~~P~y~~~-----------------~~~~~~~G~~~~~v~~~~~~~  211 (363)
                        |.|++++++++...+..      ..+||+|+++.|+|..+                 ....+..|++++.+++++ .+
T Consensus        84 --~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~-~~  160 (432)
T 3a9z_A           84 --TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSK-VN  160 (432)
T ss_dssp             --ESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCT-TT
T ss_pred             --eCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCc-cc
Confidence              99999999988544321      14899999999999875                 344456799999999843 25


Q ss_pred             CCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcC----------CeEEEecCCCCCcCCCCCC
Q 017967          212 VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKN----------HIPFFDVAYQGFASGSLDN  281 (363)
Q Consensus       212 ~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~----------~~ii~De~y~~~~~~~~~~  281 (363)
                      +.+|++.|++.++   ++++++++++||||||.+++.+   +|.++|++++          +++|+||+|......    
T Consensus       161 ~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~~~---~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~----  230 (432)
T 3a9z_A          161 GQVEVEDILAAVR---PTTCLVTIMLANNETGVIMPIS---EISRRIKALNQIRAASGLPRVLVHTDAAQALGKRR----  230 (432)
T ss_dssp             SSCCHHHHHHTCC---TTEEEEECCSBCTTTCBBCCHH---HHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSC----
T ss_pred             CCcCHHHHHHhcc---CCceEEEEECcccCcccccCHH---HHHHHHHhcCcccccccCCceEEEEEchhhhCCcc----
Confidence            6789999998886   3577888999999999999975   4667789988          999999999764321    


Q ss_pred             chhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       282 ~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                        ..+..   .+.+ +++.|+||.+|   .|+||+  +++++
T Consensus       231 --~~~~~---~~~d-~~~~s~~K~~g---~~~G~~--~~~~~  261 (432)
T 3a9z_A          231 --VDVED---LGVD-FLTIVGHKFYG---PRIGAL--YVRGV  261 (432)
T ss_dssp             --CCHHH---HCCS-EEEEEGGGTTC---CSCEEE--EETTB
T ss_pred             --cChhh---cCCC-EEEEehhHhcC---CcceEE--EEccc
Confidence              11221   2234 55899999764   679999  77643

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.85  E-value=1.2e-20  Score=183.27  Aligned_cols=252  Identities=15%  Similarity=0.101  Sum_probs=150.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.+...-|.  ..+.+.+++.+.+...  ..|.+..+..+.++++++++....+  ...++|++  |+||+++
T Consensus        30 ~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~gg~ea  101 (430)
T 3i4j_A           30 RYLDGSSGALVANIGH--GRAEVGERMAAQAARL--PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWA--VSGGSEA  101 (430)
T ss_dssp             EEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHC--CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEE--ESSHHHH
T ss_pred             EEEECCCchhccccCC--CCHHHHHHHHHHHHhc--ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCcHHHH
Confidence            6889988754333332  2566777766655332  2233333444555555555544332  23578988  9999999


Q ss_pred             HHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCC---------------CeEEEecccC-CCCCCCHHHHHH
Q 017967          164 LRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV---------------PWSEYRYYDP-KTVGLDFEGMIA  221 (363)
Q Consensus       164 l~l~~~l~~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~---------------~~~~v~~~~~-~~~~~d~~~l~~  221 (363)
                      ++++..++...      ..++.|++.+|+|.++...+...+.               .+..++..+. .....|++.|++
T Consensus       102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  181 (430)
T 3i4j_A          102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRA  181 (430)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHH
Confidence            99985544333      4578999999999988765543332               2333332100 001236688998


Q ss_pred             HHHcCC-CCcEEEEEcCCCC-CCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEE
Q 017967          222 DIKAAP-GGSFILLHGCAHN-PTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (363)
Q Consensus       222 ~l~~~~-~~~~~~~i~~p~N-PTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~  298 (363)
                      .+++.. +++.++++..+|| ++|. .++.+++++|.++|+++|+++|+||+|.+|...+.   ......+.+...++  
T Consensus       182 ~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~---~~~~~~~~~~~~di--  256 (430)
T 3i4j_A          182 LLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS---PLALSRWSGVTPDI--  256 (430)
T ss_dssp             HHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGTTTCCCSE--
T ss_pred             HHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---hhhhhhhcCCCCcE--
Confidence            887422 3344555444455 7886 67888899999999999999999999999865431   11111110112333  


Q ss_pred             EEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhh----hccccCCCchHHHHHHhcccc
Q 017967          299 AQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRL----ARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       299 ~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~----~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       .+|||.++ .| +|+||+  +++ ++    +++.+...    .....++.++++|.++...|+
T Consensus       257 -~t~sK~l~-~G~~r~G~~--~~~-~~----i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~  311 (430)
T 3i4j_A          257 -AVLGKGLA-AGYAPLAGL--LAA-PQ----VYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLD  311 (430)
T ss_dssp             -EEECGGGT-TTSSCCEEE--EEC-HH----HHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHH
T ss_pred             -EEEccccc-CCccccEEE--EEC-HH----HHHHHhccCCcccccCCCCCCHHHHHHHHHHHH
Confidence             36899999 59 999999  664 76    56666642    333455788999988877665

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.85  E-value=9.1e-21  Score=184.62  Aligned_cols=249  Identities=12%  Similarity=0.017  Sum_probs=160.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|++.|.+....+.  ..+.+.+++.+.+...  ..|....|..++++++++++....+... ++++++  |+||++|
T Consensus        44 ~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~--~~ggsea  116 (439)
T 3dxv_A           44 ELIDLSGAWGAASLGY--GHPAIVAAVSAAAANP--AGATILSASNAPAVTLAERLLASFPGEG-THKIWF--GHSGSDA  116 (439)
T ss_dssp             EEEESSTTTTTCTTCB--SCHHHHHHHHHHHHSC--SCSCSSSSEEHHHHHHHHHHHHTTTCTT-TEEEEE--ESSHHHH
T ss_pred             EEEECCCchhhccCCC--CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCCCC-CCEEEE--eCCHHHH
Confidence            6899998886433332  4567777776665442  3354455566677777777665543221 168887  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC-CCCe--------------EEEecccCCCCCC-----CHHHHHHHH
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-RVPW--------------SEYRYYDPKTVGL-----DFEGMIADI  223 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G~~~--------------~~v~~~~~~~~~~-----d~~~l~~~l  223 (363)
                      ++++..+...+.+++.|++.+|+|.++....... |...              ..++..  ..+..     |++.|++++
T Consensus       117 ~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~~l  194 (439)
T 3dxv_A          117 NEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR--PYRNDPTGDAILTLLTEKL  194 (439)
T ss_dssp             HHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS--CBTTBTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC--cccccccHHHHHHHHHHHH
Confidence            9998554333446789999999997665544333 2211              222221  11111     689999999


Q ss_pred             H-cCCCCcEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          224 K-AAPGGSFILLHGCAHNPTGIDPTP-EQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       224 ~-~~~~~~~~~~i~~p~NPTG~~~s~-~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      + ..+++++++++.+++|++|.+.+. +.+++|.++|++||+++|+||+|.+|...+.   ..... ..+...+++   |
T Consensus       195 ~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~---~~~~~-~~~~~~di~---s  267 (439)
T 3dxv_A          195 AAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR---LHCFE-HEGFVPDIL---V  267 (439)
T ss_dssp             HTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS---SSGGG-GTTCCCSEE---E
T ss_pred             HhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch---hhHHH-hcCCCCCEE---E
Confidence            4 223456777777788888887654 4599999999999999999999998754321   11111 112223433   9


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |||.++ +|+|+||+  +++ ++    +++.+........+ .++++|.++...|+
T Consensus       268 ~sK~~~-~G~riG~~--~~~-~~----~~~~~~~~~~~~t~-~~~~~~~aa~aal~  314 (439)
T 3dxv_A          268 LGKGLG-GGLPLSAV--IAP-AE----ILDCASAFAMQTLH-GNPISAAAGLAVLE  314 (439)
T ss_dssp             ECGGGG-TTSCCEEE--EEE-HH----HHTSCSSSSCCTTT-TCHHHHHHHHHHHH
T ss_pred             Ecchhc-CCcceEEE--EEC-HH----HHhhhcCCCcCCCc-ccHHHHHHHHHHHH
Confidence            999999 69999999  665 65    55555443333444 78888888766655

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.84  E-value=2.3e-20  Score=181.45  Aligned_cols=239  Identities=15%  Similarity=0.110  Sum_probs=157.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.....-|+  ..+.+.+++.+.+.......| +.....+|++++++++.       .+++|++  ++||+++
T Consensus        56 ~ylD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-------~~~~v~~--~~sGsea  123 (434)
T 3l44_A           56 KYIDYLAAYGPIITGH--AHPHITKAITTAAENGVLYGT-PTALEVKFAKMLKEAMP-------ALDKVRF--VNSGTEA  123 (434)
T ss_dssp             EEEECCGGGTTCSSCB--TCHHHHHHHHHHHHHCSCCSS-CCHHHHHHHHHHHHHCT-------TCSEEEE--ESSHHHH
T ss_pred             EEEECCCchhccccCC--CCHHHHHHHHHHHHhCcCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCchHHH
Confidence            7899988874333333  356777777665543332334 56677889898888852       2578988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC-CC-------------------CeEEEecccCCCCCCCHHHHHHHH
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-RV-------------------PWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G~-------------------~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      ++++..+.....++++|++.+|+|.++...+... |.                   .+..+|.       -|++.+++++
T Consensus       124 ~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l  196 (434)
T 3l44_A          124 VMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF-------NNVETLKEAL  196 (434)
T ss_dssp             HHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT-------TCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc-------ccHHHHHHHH
Confidence            9998554433347799999999998765433322 21                   1222221       1889999998


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcC
Q 017967          224 KAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~  302 (363)
                      ++.++++.++++..++|++|.+. +.+.+++|.++|++||+++|+||+|.+| ..+.   ......+ ....+   +.+|
T Consensus       197 ~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~---~~~~~~~-~~~~d---i~t~  268 (434)
T 3l44_A          197 DKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY---GGAQDLL-GVTPD---LTAL  268 (434)
T ss_dssp             HHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS---SCHHHHH-TCCCS---EEEE
T ss_pred             HhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc---cHHHHHc-CCCCC---eeeh
Confidence            75333445555444444555555 8899999999999999999999999998 3321   1222222 22233   4579


Q ss_pred             ccccccccccceEEEEeeCChhHHHHHHHHHHhh---hccccCCCchHHHHHHhcccc
Q 017967          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRL---ARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       303 SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ||.++ +|+|+||+  +++ ++    +++.+...   .....++.++++|.++...|+
T Consensus       269 sK~~~-~G~~iG~~--~~~-~~----i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~  318 (434)
T 3l44_A          269 GKVIG-GGLPIGAY--GGK-KE----IMEQVAPLGPAYQAGTMAGNPASMASGIACLE  318 (434)
T ss_dssp             EGGGG-TTSSCEEE--EEC-HH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHH
T ss_pred             hhhhc-CCcCeeeE--EEc-HH----HHHhhccCCCcccCCCCCcCHHHHHHHHHHHH
Confidence            99998 89999999  665 66    55555431   123345778888888766655

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.84  E-value=2.6e-20  Score=180.54  Aligned_cols=246  Identities=11%  Similarity=-0.015  Sum_probs=153.5

Q ss_pred             CcEEeeccccCCCCCCccc-cHHHHHHHHHHHccCCC---CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccc
Q 017967           84 KKLNLGVGAYRTEELQPYV-LDVVKKAENLMLERGEN---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~-~~~v~~a~~~~~~~~~~---~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (363)
                      .++|+..|.+...-+  +. ++.+.+++.+.+.....   ..| +.....++++.+++++    +..+ +++|++  |+|
T Consensus        43 ~~lD~~~~~~~~~lG--~~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----~~~~-~~~v~~--~~g  112 (419)
T 2eo5_A           43 KYLDFTSGIGVNNLG--WPSHPEVIKIGIEQMQKLAHAAANDF-YNIPQLELAKKLVTYS----PGNF-QKKVFF--SNS  112 (419)
T ss_dssp             EEEESSGGGGTTTTC--BSCCHHHHHHHHHHHTTSCCCSCSCS-CCHHHHHHHHHHHHHS----SCSS-CEEEEE--ESS
T ss_pred             EEEEccCChhhhccC--CCCCHHHHHHHHHHHhhCcccccccc-CCHHHHHHHHHHHHhC----CCCc-CCEEEE--eCc
Confidence            688998887421112  22 56777777766643211   113 3333456666666653    3222 578988  999


Q ss_pred             hhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hC-------------CCCeEEEecccCCC--CC----------
Q 017967          160 GTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DA-------------RVPWSEYRYYDPKT--VG----------  213 (363)
Q Consensus       160 gt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~-------------G~~~~~v~~~~~~~--~~----------  213 (363)
                      |+++++++..++..+ +||+|++.+|+|.++..... ..             +..++.+|..+...  ++          
T Consensus       113 g~ea~~~ai~~~~~~-~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~  191 (419)
T 2eo5_A          113 GTEAIEASIKVVKNT-GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSEL  191 (419)
T ss_dssp             HHHHHHHHHHHHHTT-SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHH
T ss_pred             hHHHHHHHHHHHHHh-hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhh
Confidence            999999985433222 48999999999976543222 11             23567777632111  12          


Q ss_pred             --CCHHHHH-HHHHcCC--CCcEEEEEcCCC-CCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHH
Q 017967          214 --LDFEGMI-ADIKAAP--GGSFILLHGCAH-NPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSV  286 (363)
Q Consensus       214 --~d~~~l~-~~l~~~~--~~~~~~~i~~p~-NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~  286 (363)
                        +|++.|+ +.+++..  ++++++ +++|+ ||||. .++.+++++|.++|+++|+++|+||+|.+|...+.   ....
T Consensus       192 ~~~~~~~l~~~~i~~~~~~~~~~~v-i~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~---~~~~  267 (419)
T 2eo5_A          192 VNRVIEFIEDYIFVNLVPPEEVAGI-FFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---LFAI  267 (419)
T ss_dssp             HHHHHHHHHHTHHHHTCCGGGEEEE-EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG
T ss_pred             HHHHHHHHHHHHHhhccCCCCEEEE-EEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc---hhhH
Confidence              4688999 8887421  234444 46665 57896 67899999999999999999999999999865431   1111


Q ss_pred             HHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          287 RLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       287 ~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      . .....++++   ||||.|+ .| +|+||+  +++ ++.    + .+ ........+.+.++|.++...|+.
T Consensus       268 ~-~~~~~~d~~---t~sK~~~-~G~~riG~~--~~~-~~~----~-~~-~~~~~~t~~~n~~~~~aa~aal~~  326 (419)
T 2eo5_A          268 E-NFNTVPDVI---TLAKALG-GGIMPIGAT--IFR-KDL----D-FK-PGMHSNTFGGNALACAIGSKVIDI  326 (419)
T ss_dssp             G-GGTCCCSEE---EECGGGG-TTTSCCEEE--EEE-GGG----C-CC-------CCCCCHHHHHHHHHHHHH
T ss_pred             H-hcCCCCCEE---Eeccccc-CCccceEEE--EEc-hHh----h-cC-CcccCCCCCCCHHHHHHHHHHHHH
Confidence            1 112234433   8999999 59 999999  776 443    3 23 111223457788999888776654

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.84  E-value=3.5e-20  Score=179.73  Aligned_cols=237  Identities=15%  Similarity=0.112  Sum_probs=156.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCC--CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|++.|...+.-++  ..+.+.+++.+.++....  ..| +.....++++.+++++    +    .+++++  |+||+
T Consensus        58 ~~lD~~~~~~~~~lG~--~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~v~~--~~ggt  124 (420)
T 2pb2_A           58 EYIDFAGGIAVTALGH--CHPALVEALKSQGETLWHTSNVF-TNEPALRLGRKLIDAT----F----AERVLF--MNSGT  124 (420)
T ss_dssp             EEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCCCCCTTS-CCHHHHHHHHHHHHHS----S----CSEEEE--ESSHH
T ss_pred             EEEEccccccccccCC--CCHHHHHHHHHHHHhcccccCcc-CCHHHHHHHHHHHhhC----C----CCeEEE--eCCHH
Confidence            6889988843222232  356777777766643211  112 3334456666666653    2    378888  99999


Q ss_pred             HHHHHHHHHHHHhC-----CC-CEEEEcCCCCcchHH-HHhhCCCC------------eEEEecccCCCCCCCHHHHHHH
Q 017967          162 GSLRLAAALIERYF-----PG-AKVLISSPTWGNHKN-IFNDARVP------------WSEYRYYDPKTVGLDFEGMIAD  222 (363)
Q Consensus       162 ~al~l~~~l~~~~~-----~g-d~Vlv~~P~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~~d~~~l~~~  222 (363)
                      +|++++..++....     +| +.|++.+|+|.++.. .+...|.+            +..++.       .|++.|++.
T Consensus       125 eA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~  197 (420)
T 2pb2_A          125 EANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAV  197 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHH
Confidence            99999855432211     67 599999999977643 34444543            444443       379999998


Q ss_pred             HHcCCCCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          223 IKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       223 l~~~~~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      ++   ++++++++++++||+|. +++.+++++|.++|+++|+++|+||+|.+|...+.   ...... .+...+++   |
T Consensus       198 i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~---~~~~~~-~~~~~dii---t  267 (420)
T 2pb2_A          198 MD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD---LFAYMH-YGVTPDIL---T  267 (420)
T ss_dssp             CC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHH-HTCCCSEE---E
T ss_pred             hc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc---HHHHHh-cCCCCCeE---E
Confidence            86   35677777888888884 69999999999999999999999999988865431   122222 23334554   7


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |||.++ +|+|+||+  +++ ++    +++.+........++.+.++|.++...|+.
T Consensus       268 ~sK~l~-~G~~iG~~--~~~-~~----l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~  316 (420)
T 2pb2_A          268 SAKALG-GGFPVSAM--LTT-QE----IASAFHVGSHGSTYGGNPLACAVAGAAFDI  316 (420)
T ss_dssp             ECGGGG-TTSCCEEE--EEC-HH----HHTTCC----CCEECCCHHHHHHHHHHHHH
T ss_pred             eccccc-CCCceEEE--EEh-HH----HHHhhcCCCcCcccCcCHHHHHHHHHHHHH
Confidence            899999 89999999  776 55    344333322233457788888887665543

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.84  E-value=5.7e-20  Score=178.47  Aligned_cols=247  Identities=10%  Similarity=-0.011  Sum_probs=158.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCC---CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN---KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~---~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      .++|+..+.+...-++  ..+.+.+++.+.+.....   ..| +.....++++++++++.      ..+++|++  |+||
T Consensus        44 ~ylD~~~~~~~~~lg~--~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~------~~~~~v~~--~~gg  112 (429)
T 1s0a_A           44 RLVDGMSSWWAAIHGY--NHPQLNAAMKSQIDAMSHVMFGGI-THAPAIELCRKLVAMTP------QPLECVFL--ADSG  112 (429)
T ss_dssp             EEEESSTTTTTCTTCB--SCHHHHHHHHHHHHHCSCCCCSSE-ECHHHHHHHHHHHHHSC------TTCCEEEE--ESSH
T ss_pred             EEEEcCccHhhccCCC--CCHHHHHHHHHHHHhccccccccc-CCHHHHHHHHHHHHhCC------CCCCEEEE--eCCH
Confidence            5788887764222222  356777777666543211   133 23334677778887742      23689988  9999


Q ss_pred             hHHHHHHHHHHHH-hC----CCCEEEEcCCCCcchHHHHh-hCC-------------CCeEEEeccc---CCCC-CCCHH
Q 017967          161 TGSLRLAAALIER-YF----PGAKVLISSPTWGNHKNIFN-DAR-------------VPWSEYRYYD---PKTV-GLDFE  217 (363)
Q Consensus       161 t~al~l~~~l~~~-~~----~gd~Vlv~~P~y~~~~~~~~-~~G-------------~~~~~v~~~~---~~~~-~~d~~  217 (363)
                      ++|++++..++.. ..    |||+|++.+|+|.++..... ..|             ..+..++...   ...+ .+|++
T Consensus       113 tea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  192 (429)
T 1s0a_A          113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMV  192 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGH
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHH
Confidence            9999998554322 12    68999999999987654332 211             1344455421   1123 48999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCC--CCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC
Q 017967          218 GMIADIKAAPGGSFILLHGCA--HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (363)
Q Consensus       218 ~l~~~l~~~~~~~~~~~i~~p--~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  294 (363)
                      .|++.+++.++++++++ ++|  |||||. ..+.+++++|.++|+++|+++|+||+|.+|...+.   ..... ......
T Consensus       193 ~l~~~l~~~~~~~~~vi-~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~---~~~~~-~~~~~~  267 (429)
T 1s0a_A          193 GFARLMAAHRHEIAAVI-IEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACE-HAEIAP  267 (429)
T ss_dssp             HHHHHHHHHTTTEEEEE-ECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG-GGTCCC
T ss_pred             HHHHHHHhCCCCEEEEE-EeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch---HHHhh-hcCCCC
Confidence            99999874323344554 566  699996 55788899999999999999999999998865321   11111 112233


Q ss_pred             eEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhh-----ccccCCCchHHHHHHhcccc
Q 017967          295 ELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLA-----RPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       295 ~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~-----~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +++   ||||.++ +| +|+||+  +++ ++    +++.+....     .....+.+.++|.++...|+
T Consensus       268 d~~---t~sK~l~-~G~~~iG~~--~~~-~~----~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~  325 (429)
T 1s0a_A          268 DIL---CLGKALT-GGTMTLSAT--LTT-RE----VAETISNGEAGCFMHGPTFMGNPLACAAANASLA  325 (429)
T ss_dssp             SEE---EECGGGG-TSSSCCEEE--EEC-HH----HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred             CEE---Eeccccc-CCCccceEE--EeC-HH----HHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHH
Confidence            433   7999998 68 999999  665 56    455555421     22344678888888766654

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.84  E-value=1.3e-20  Score=179.91  Aligned_cols=198  Identities=10%  Similarity=0.040  Sum_probs=139.5

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g  177 (363)
                      ..+++.+.+++.+..   . ..|.+  .....++++++++++...     .+++|++  |.||+++++++  +...+.+|
T Consensus        32 ~~~~~~v~~a~~~~~---~-~~~~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~--~~gg~~al~~~--~~~~~~~g   98 (393)
T 3kgw_A           32 SNLAPRVLAAGSLRM---I-GHMQKEMLQIMEEIKQGIQYVFQTR-----NPLTLVV--SGSGHCAMETA--LFNLLEPG   98 (393)
T ss_dssp             CCCCHHHHHHTTCCC---C-CTTSHHHHHHHHHHHHHHHHHHTCC-----CSEEEEE--SCCTTTHHHHH--HHHHCCTT
T ss_pred             CCCCHHHHHHhcccc---c-CcccHHHHHHHHHHHHHHHHHhCCC-----CCcEEEE--eCCcHHHHHHH--HHhcCCCC
Confidence            445677777654311   1 12222  234567888888886432     1345777  99999999888  44457799


Q ss_pred             CEEEEcCCCCcc--hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHH
Q 017967          178 AKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (363)
Q Consensus       178 d~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~  255 (363)
                      |+|+++.++|..  +...++..|++++.++++  .++.+|++.+++.+++  .+++++++++||||||.+++   +++|.
T Consensus        99 d~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~  171 (393)
T 3kgw_A           99 DSFLTGTNGIWGMRAAEIADRIGARVHQMIKK--PGEHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQP---LDGFG  171 (393)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHH
T ss_pred             CEEEEEeCCchhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhcc---HHHHH
Confidence            999999988853  367778899999999984  3457999999999984  14567788999999999998   66788


Q ss_pred             HHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHh
Q 017967          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKR  335 (363)
Q Consensus       256 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~  335 (363)
                      ++|+++|+++|+||+|...... .  +       .+.....+++.|+||.++ .+.++||+  +++ ++    +++.+..
T Consensus       172 ~l~~~~~~~li~De~~~~g~~~-~--~-------~~~~~~d~~~~s~sK~~~-~~~g~g~~--~~~-~~----~~~~~~~  233 (393)
T 3kgw_A          172 ELCHRYQCLLLVDSVASLGGVP-I--Y-------MDQQGIDIMYSSSQKVLN-APPGISLI--SFN-DK----AKYKVYS  233 (393)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSC-C--C-------TTTTTCCEEEEESSSTTC-CCSSCEEE--EEC-HH----HHHHHHT
T ss_pred             HHHHHcCCEEEEECCccccCcc-c--c-------hhhcCCCEEEecCccccc-CCCceeEE--EEC-HH----HHHHHhc
Confidence            8899999999999997632211 0  0       112235678899999774 34458999  665 66    4555543

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.84  E-value=2e-20  Score=180.16  Aligned_cols=192  Identities=13%  Similarity=0.011  Sum_probs=137.1

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEE-EEeccchhHHHHHHHHHHHHhCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVA-TVQGLSGTGSLRLAAALIERYFP  176 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~-~~~t~ggt~al~l~~~l~~~~~~  176 (363)
                      ..+++.+.+++.+    .....|.+  .....++++++++++..      ++++++ +  +.||++++.++  +..++.+
T Consensus        20 ~~~~~~v~~a~~~----~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~~~~~--~~s~t~al~~~--~~~l~~~   85 (416)
T 3isl_A           20 VEVDPRVLRVMST----PVVGQFDPAFTGIMNETMEMLRELFQT------KNRWAYPI--DGTSRAGIEAV--LASVIEP   85 (416)
T ss_dssp             CCCCHHHHHHTTS----CCCCTTSHHHHHHHHHHHHHHHHHTTC------CCSEEEEE--ESCHHHHHHHH--HHHHCCT
T ss_pred             cCcCHHHHHHhcc----cCCCCccHHHHHHHHHHHHHHHHHhCC------CCCcEEEe--cCcHHHHHHHH--HHHhcCC
Confidence            4456677665433    11122322  23456778888887532      234443 5  88999999888  4455789


Q ss_pred             CCEEEEcCCCCcc--hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHH
Q 017967          177 GAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (363)
Q Consensus       177 gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i  254 (363)
                      ||+|++++|+|..  +...++..|++++.++++  .++.+|++.+++++++  ++++++++++||||||..++   +++|
T Consensus        86 gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i  158 (416)
T 3isl_A           86 EDDVLIPIYGRFGYLLTEIAERYGANVHMLECE--WGTVFDPEDIIREIKK--VKPKIVAMVHGETSTGRIHP---LKAI  158 (416)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CHHH
T ss_pred             CCEEEEecCCcccHHHHHHHHhcCCeeEEEecC--CCCCCCHHHHHHHHhh--CCCcEEEEEccCCCCceecC---HHHH
Confidence            9999999999987  777888999999999984  3567899999999973  13568888999999999998   6678


Q ss_pred             HHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHH
Q 017967          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLA  326 (363)
Q Consensus       255 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~  326 (363)
                      .++|+++|+++|+|++|...... .  +       .......+++.|++|.++ .+.++|++  +++ ++.+
T Consensus       159 ~~l~~~~~~~li~D~a~~~~~~~-~--~-------~~~~~~d~~~~s~~K~l~-g~~g~g~~--~~~-~~~~  216 (416)
T 3isl_A          159 GEACRTEDALFIVDAVATIGGCE-V--K-------VDEWKIDAAIGGTQKCLS-VPSGMAPI--TYN-ERVA  216 (416)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTSC-C--C-------TTTTTCSEEECCSSSTTC-CCSSEEEE--EEC-HHHH
T ss_pred             HHHHHHcCCEEEEECCccccCCC-c--c-------hhhcCCCEEEecCccccC-CCCCeEEE--EEC-HHHH
Confidence            88899999999999997633221 0  0       112235688999999753 34568999  665 6633

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.84  E-value=3.3e-20  Score=176.40  Aligned_cols=195  Identities=14%  Similarity=0.054  Sum_probs=146.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      ..++|+.|.+       .+.+ +.+++.+....   ..|.+..+..++++++++++..        +++++  +.||++|
T Consensus         7 ~~~~l~~~~~-------~~~~-~~~~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~a   65 (374)
T 3uwc_A            7 PYSYLERQFA-------DIEP-YLNDLREFIKT---ADFTLGAELEKFEKRFAALHNA--------PHAIG--VGTGTDA   65 (374)
T ss_dssp             CSCCHHHHTS-------SCHH-HHHHHHHHHHH---TCCSSCHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHH
T ss_pred             eeeccccCCC-------CchH-HHHHHHHHHHc---CCcccChhHHHHHHHHHHHhCC--------CcEEE--eCCHHHH
Confidence            4677877764       2233 66776666544   3477888999999999999632        36666  8999999


Q ss_pred             HHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          164 LRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       164 l~l~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++++  +..+ +.+||+|+++.|+|..+...++..|++++.++.+  +++.+|++.+++.+++   ++++++   |+|||
T Consensus        66 ~~~~--~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~---~~~~v~---~~n~~  135 (374)
T 3uwc_A           66 LAMS--FKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITD---KTKAIM---PVHYT  135 (374)
T ss_dssp             HHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCT---TEEEEC---CBCGG
T ss_pred             HHHH--HHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCC---CceEEE---EeCCc
Confidence            8887  4444 5799999999999999999999999999999985  5688999999988763   455554   89999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCc--cccccccccceEEEEee
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVC  320 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S--K~~~l~G~RvG~i~~v~  320 (363)
                      |...+   +++|.++|+++|+++|+|++|..+..-+.  ...      .. ...+++.|||  |.++.+|. .|++  ++
T Consensus       136 G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~--~~~------~~-~~d~~~~s~~~~K~l~~~g~-~g~~--~~  200 (374)
T 3uwc_A          136 GNIAD---MPALAKIAKKHNLHIVEDACQTILGRIND--KFV------GS-WGQFACFSLHPLKNLNVWSD-AGVI--IT  200 (374)
T ss_dssp             GCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT--EET------TS-SSSEEEEECSSSSSSCCSSC-CEEE--EE
T ss_pred             CCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCC--eec------cc-cccEEEEeCCCCCcCCccce-eEEE--Ee
Confidence            99876   56677789999999999999986532111  000      00 1246677766  99985576 8888  77


Q ss_pred             CChh
Q 017967          321 SSSD  324 (363)
Q Consensus       321 ~~~~  324 (363)
                      ++++
T Consensus       201 ~~~~  204 (374)
T 3uwc_A          201 HSDE  204 (374)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            7776

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.84  E-value=2.5e-20  Score=181.09  Aligned_cols=247  Identities=11%  Similarity=0.054  Sum_probs=153.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.+...-++  ..+.+.+++.+.+....  ...| +.....++++.+++++    +  .++++|++  |+||+
T Consensus        44 ~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----~--~~~~~v~~--~~gg~  112 (433)
T 1zod_A           44 AILDFTSGQMSAVLGH--CHPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANIT----P--PGLDRALL--LSTGA  112 (433)
T ss_dssp             EEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHS----C--TTCCEEEE--ESCHH
T ss_pred             EEEEcccchhccccCC--CCHHHHHHHHHHHHhCccccccc-CCHHHHHHHHHHHHhC----C--CCcCEEEE--eCchH
Confidence            5788877764222222  35667777666553321  1233 2334456666666663    2  13578988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC------------CCCeEEEecccC--CCC--------CCCHHHH
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA------------RVPWSEYRYYDP--KTV--------GLDFEGM  219 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~------------G~~~~~v~~~~~--~~~--------~~d~~~l  219 (363)
                      +|++++..+......+|+|++.+|+|.++.......            ...+..++....  ..+        .+|++.|
T Consensus       113 ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l  192 (433)
T 1zod_A          113 ESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYA  192 (433)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHH
Confidence            999998553322234589999999998765432211            113334433110  112        2368999


Q ss_pred             HHHHHcCC-CCcEEEEEcCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeE
Q 017967          220 IADIKAAP-GGSFILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (363)
Q Consensus       220 ~~~l~~~~-~~~~~~~i~~p-~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~v  296 (363)
                      ++.+++.. +++++++ ++| +||||. .++.+++++|.++|++||+++|+||+|.+|...+.   ...... .....++
T Consensus       193 e~~l~~~~~~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~---~~~~~~-~~~~~di  267 (433)
T 1zod_A          193 FDLIDRQSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQR-DGVTPDI  267 (433)
T ss_dssp             HHHHHHHCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHH-HTCCCSE
T ss_pred             HHHHHhcCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch---HhHHhh-cCCCCCE
Confidence            99887421 2344444 566 588996 57899999999999999999999999999865321   112221 2222333


Q ss_pred             EEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhh--ccccCCCchHHHHHHhcccc
Q 017967          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA--RPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       297 i~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~--~~~~~~~s~~~q~~~~~~l~  357 (363)
                         .||||.|+. |+|+||+  +++ ++    +++.+....  .....+.++++|.++...|+
T Consensus       268 ---~s~sK~~~~-G~~ig~~--~~~-~~----~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~  319 (433)
T 1zod_A          268 ---LTLSKTLGA-GLPLAAI--VTS-AA----IEERAHELGYLFYTTHVSDPLPAAVGLRVLD  319 (433)
T ss_dssp             ---EEECHHHHT-TSSCEEE--EEC-HH----HHHHHHHTTCCCCCTTTTCHHHHHHHHHHHH
T ss_pred             ---EEecccccC-CCCeeEE--EEh-HH----HHHhhccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence               489999994 9999999  776 56    455554422  11445678888887766654

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.84  E-value=1.6e-21  Score=187.03  Aligned_cols=186  Identities=12%  Similarity=0.015  Sum_probs=133.5

Q ss_pred             ccccHHHHHHHHHHHccC---CCCCCCC----CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHH
Q 017967          100 PYVLDVVKKAENLMLERG---ENKEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE  172 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~---~~~~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~  172 (363)
                      ..+++.+.+++.+.+...   ....|..    .....++++++++++..      ++++|++  |+||+++++++..  .
T Consensus        30 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~------~~~~v~~--~~g~t~al~~~~~--~   99 (400)
T 3vax_A           30 TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSA------EPDELIF--TSGATESNNIALL--G   99 (400)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTC------CGGGEEE--ESCHHHHHHHHHH--T
T ss_pred             CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCC------CCCcEEE--eCCHHHHHHHHHH--H
Confidence            345677777766655310   0001211    22356777788877532      3678988  9999999999843  3


Q ss_pred             Hh----CCCC-EEEEcCCCCcchHHHHh---hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCC
Q 017967          173 RY----FPGA-KVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGI  244 (363)
Q Consensus       173 ~~----~~gd-~Vlv~~P~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~  244 (363)
                      +.    .+|| .|+++.+.|+.+...+.   ..|++++.++++  .++.+|++.|+++++   ++++++++++||||||.
T Consensus       100 l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~  174 (400)
T 3vax_A          100 LAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPG--PSGRISVEGVMERLR---PDTLLVSLMHVNNETGV  174 (400)
T ss_dssp             THHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCC--TTCCCCHHHHHTTCC---TTEEEEECCSBCTTTCB
T ss_pred             HHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccC--CCCCcCHHHHHHhcC---CCceEEEEECCCCCcee
Confidence            33    6899 99999999988766554   479999999984  367889999999886   35788999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       245 ~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      +++.   ++|.++|+++|+++|+|++|......      ..    .... ..+++.|+||.+|.+|  +|++
T Consensus       175 ~~~l---~~i~~la~~~~~~li~D~a~~~~~~~------~~----~~~~-~d~~~~s~~K~~g~~g--~g~~  230 (400)
T 3vax_A          175 IQPV---AELAQQLRATPTYLHVDAAQGYGKVP------GD----LTTP-IDMISISGHKIGAPKG--VGAL  230 (400)
T ss_dssp             BCCH---HHHHHHHTTSSCEEEEECTTTTTTSG------GG----GGSC-CSEEEEETGGGTSCSS--CEEE
T ss_pred             eCcH---HHHHHHHHhcCCEEEEEhhhhcCCCC------cC----hhhc-CcEEEEeHHHhCCCCc--eEEE
Confidence            9984   66778899999999999998743211      11    1222 4588999999877555  5777

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.84  E-value=3.4e-20  Score=174.76  Aligned_cols=214  Identities=14%  Similarity=0.014  Sum_probs=150.1

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      +++.|+|+.+.+      ..+.+.+.+++.+.... ....|++.....++++.+++++. .      +.+|++  |.||+
T Consensus         6 ~~~~id~~~~~~------~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g-~------~~~v~~--~~~gt   69 (356)
T 1v72_A            6 RPPALGFSSDNI------AGASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFE-R------DVEVFL--VPTGT   69 (356)
T ss_dssp             CCCCCBCSCGGG------CCCCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHT-S------CCEEEE--ESCHH
T ss_pred             CCceEeeccCCc------cCCCHHHHHHHHhhccC-cccccccchHHHHHHHHHHHHhC-C------CCcEEE--eCCcc
Confidence            357889987653      23467788887665422 22567666677888888888863 1      356777  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--HhhC--CCCeEEEecccCCCCCCCHHHHHH-HHHcC----CCCcEE
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNI--FNDA--RVPWSEYRYYDPKTVGLDFEGMIA-DIKAA----PGGSFI  232 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~--~~~~--G~~~~~v~~~~~~~~~~d~~~l~~-~l~~~----~~~~~~  232 (363)
                      +++.++  +...+.+||.|+++.|+|..+...  +...  |++++.+|.+   ++.+|++.+++ .+++.    ..++++
T Consensus        70 ~a~~~a--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~  144 (356)
T 1v72_A           70 AANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPAC  144 (356)
T ss_dssp             HHHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred             HHHHHH--HHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceE
Confidence            998887  444456999999999998776554  6666  9999999873   36899999999 88641    114678


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcC--CCCCCchhHHHHHHhcCCeEEEEEcCcccccccc
Q 017967          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (363)
Q Consensus       233 ~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G  310 (363)
                      +++++||| ||.+++.+++++|+++|+++|+++|+|++|..+..  .+.......    .+...+++ +.|+||.    |
T Consensus       145 v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~~~d~~-~~s~sK~----g  214 (356)
T 1v72_A          145 VSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMT----WKAGVDAL-SFGATKN----G  214 (356)
T ss_dssp             EEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTT----GGGTCCEE-EECCGGG----T
T ss_pred             EEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhh----hhhcCCEE-EEecccC----C
Confidence            88888987 99999999999999999999999999999875421  111000000    01123444 5599997    3


Q ss_pred             ccce--EEEEeeCChhHHHHH
Q 017967          311 ERIG--AMNVVCSSSDLAARV  329 (363)
Q Consensus       311 ~RvG--~i~~v~~~~~~~~~~  329 (363)
                      .|+|  |+  ++ +++.++++
T Consensus       215 ~~~G~g~~--~~-~~~~~~~~  232 (356)
T 1v72_A          215 VLAAEAIV--LF-NTSLATEM  232 (356)
T ss_dssp             CSSCEEEE--ES-SGGGHHHH
T ss_pred             CcCccEEE--EE-CHHHHhhH
Confidence            4677  66  55 57744444

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.84  E-value=1.5e-20  Score=180.74  Aligned_cols=197  Identities=13%  Similarity=0.073  Sum_probs=140.5

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCc-EEEEeccchhHHHHHHHHHHHHhCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQR-VATVQGLSGTGSLRLAAALIERYFP  176 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~-i~~~~t~ggt~al~l~~~l~~~~~~  176 (363)
                      ..+++.+.+++.+..   . ..|.+  .....++++.+++++...      .++ +++  +.||+++++++  +..++.+
T Consensus        22 ~~~~~~v~~a~~~~~---~-~~~~~~~~~~~~~~~~~la~~~~~~------~~~~v~~--~~sgt~al~~~--~~~~~~~   87 (411)
T 3nnk_A           22 INADPRVLRAMSSQL---I-GQYDPAMTHYMNEVMALYRGVFRTE------NRWTMLV--DGTSRAGIEAI--LVSAIRP   87 (411)
T ss_dssp             CCCCHHHHHHHTSCC---C-CTTCHHHHHHHHHHHHHHHHHHTCC------CSEEEEE--ESCHHHHHHHH--HHHHCCT
T ss_pred             CCCCHHHHHHhhccc---c-ccccHHHHHHHHHHHHHHHHHhCCC------CCcEEEE--CCCcHHHHHHH--HHHhcCC
Confidence            445677777654321   1 22322  123467888888886432      233 555  88999999988  4445789


Q ss_pred             CCEEEEcCCCCcc--hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHH
Q 017967          177 GAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (363)
Q Consensus       177 gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i  254 (363)
                      ||+|+++.|+|..  +...++..|++++.+++  +.++.+|++.+++++++.  +++++++++||||||.+++   +++|
T Consensus        88 gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~---l~~i  160 (411)
T 3nnk_A           88 GDKVLVPVFGRFGHLLCEIARRCRAEVHTIEV--PWGEVFTPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP---LAEL  160 (411)
T ss_dssp             TCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTH
T ss_pred             CCEEEEecCCchHHHHHHHHHHcCCeEEEEec--CCCCCCCHHHHHHHHhhC--CCeEEEEeCCCCCcceecc---HHHH
Confidence            9999999999977  88889999999999998  346778999999999741  4567788999999999988   5677


Q ss_pred             HHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHH
Q 017967          255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLK  334 (363)
Q Consensus       255 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~  334 (363)
                      .++|+++|+++|+||++...... .     .    .......+++.|++|.++ .+.++||+  +++ ++    +++.+.
T Consensus       161 ~~l~~~~~~~li~Dea~~~~~~~-~-----~----~~~~~~d~~~~s~~K~l~-~~~g~g~~--~~~-~~----~~~~~~  222 (411)
T 3nnk_A          161 GEICRRYDALFYTDATASLGGNP-L-----E----TDVWGLDAVSAGMQKCLG-GPSGTSPI--TLS-AR----MEEAIR  222 (411)
T ss_dssp             HHHHHHHTCEEEEECTTTBTTBC-C-----C----TTTTTCSEEECCSTTTTC-CCSSEEEE--EEC-HH----HHHHHH
T ss_pred             HHHHHHcCCEEEEECCcccCCcc-c-----c----hhccCCcEEEecCccccC-CCCceEEE--EEC-HH----HHHHHh
Confidence            88899999999999996542211 0     0    112235688999999754 34568999  665 66    444444


Q ss_pred             h
Q 017967          335 R  335 (363)
Q Consensus       335 ~  335 (363)
                      .
T Consensus       223 ~  223 (411)
T 3nnk_A          223 R  223 (411)
T ss_dssp             T
T ss_pred             h
Confidence            3

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.84  E-value=7.9e-20  Score=173.43  Aligned_cols=188  Identities=15%  Similarity=0.037  Sum_probs=135.0

Q ss_pred             CCccccHHHHHHHHHHHccCCC---CCCCC----CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHH
Q 017967           98 LQPYVLDVVKKAENLMLERGEN---KEYLP----IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAAL  170 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~---~~Y~~----~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l  170 (363)
                      +...+++.+.+++.+.+.....   ..|..    .....++++++++++..      ++++|++  |+|+++++.++.. 
T Consensus         8 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~i~~--~~g~~~a~~~~~~-   78 (382)
T 4hvk_A            8 SAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNG------GGGTVVF--TSGATEANNLAII-   78 (382)
T ss_dssp             TCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTC------TTEEEEE--ESSHHHHHHHHHH-
T ss_pred             CcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCC------CcCeEEE--ECCchHHHHHHHH-
Confidence            3445677888887776633110   01211    12234677777777532      3578877  9999999998843 


Q ss_pred             HHHh----CCCCEEEEcCCCCcchHHHHh---hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          171 IERY----FPGAKVLISSPTWGNHKNIFN---DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       171 ~~~~----~~gd~Vlv~~P~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                       .+.    .+||.|+++.|+|+.+...+.   ..|++++.++++  .++.+|++.++++++   ++++++++++||||||
T Consensus        79 -~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG  152 (382)
T 4hvk_A           79 -GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG--KYGEVDVSFIDQKLR---DDTILVSVQHANNEIG  152 (382)
T ss_dssp             -HHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC--TTSCBCHHHHHHHCC---TTEEEEECCSBCTTTC
T ss_pred             -HhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC--CCCCcCHHHHHHHhc---cCceEEEEECCCCCce
Confidence             334    799999999999998877554   479999999984  457899999999886   3577999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      .+++.   ++|.++|+++|+ +|+|++|......   .   ...    .....+++.|+||.+|.+|  +|++
T Consensus       153 ~~~~~---~~i~~l~~~~~~-li~D~a~~~~~~~---~---~~~----~~~~d~~~~s~~K~~g~~g--~g~~  209 (382)
T 4hvk_A          153 TIQPV---EEISEVLAGKAA-LHIDATASVGQIE---V---DVE----KIGADMLTISSNDIYGPKG--VGAL  209 (382)
T ss_dssp             BBCCH---HHHHHHHSSSSE-EEEECTTTBTTBC---C---CHH----HHTCSEEEEESGGGTSCTT--CEEE
T ss_pred             eeCCH---HHHHHHHHHcCE-EEEEhHHhcCCCC---C---Cch----hcCCCEEEEeHHHhcCCCc--eEEE
Confidence            99984   567778999999 9999997532211   1   111    1134588999999887666  6777

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.83  E-value=1.3e-19  Score=173.41  Aligned_cols=189  Identities=14%  Similarity=0.023  Sum_probs=141.6

Q ss_pred             cHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCEEE
Q 017967          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVL  181 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~Vl  181 (363)
                      ++.+.+++.+.+...   .|.+..+..++++++++++..        +++++  +.||++|++++  +..+ +.+||+|+
T Consensus        19 ~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~al~~~--~~~~~~~~gd~Vl   83 (393)
T 1mdo_A           19 GAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTGN--------QYAVA--VSSATAGMHIA--LMALGIGEGDEVI   83 (393)
T ss_dssp             CHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEEE
T ss_pred             CHHHHHHHHHHHhcC---CcCCChHHHHHHHHHHHHhCC--------CcEEE--ecChHHHHHHH--HHHcCCCCCCEEE
Confidence            456667776666442   244667899999999999733        36766  89999999988  3444 57999999


Q ss_pred             EcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhc
Q 017967          182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK  261 (363)
Q Consensus       182 v~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~  261 (363)
                      ++.|+|..+...++..|++++.++++ ++++.+|++.+++.+++   ++++++++   ||||...+   +++|.++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~---~~~~v~~~---~~~G~~~~---~~~i~~l~~~~  153 (393)
T 1mdo_A           84 TPSMTWVSTLNMIVLLGANPVMVDVD-RDTLMVTPEHIEAAITP---QTKAIIPV---HYAGAPAD---LDAIYALGERY  153 (393)
T ss_dssp             EESSSCHHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCCT---TEEEECCB---CGGGCCCC---HHHHHHHHHHH
T ss_pred             eCCCccHhHHHHHHHCCCEEEEEecc-CCcCCCCHHHHHHhcCC---CceEEEEe---CCCCCcCC---HHHHHHHHHHc
Confidence            99999999999999999999999985 33577999999998863   45566643   58999865   67778889999


Q ss_pred             CCeEEEecCCCCC-cCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHH
Q 017967          262 NHIPFFDVAYQGF-ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       262 ~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      |+++|+|++|... .+..  . ..      ..  ..+++.||||..+++|.|+||+  ++++++.++++
T Consensus       154 ~~~li~D~a~~~g~~~~~--~-~~------~~--~d~~~~S~~k~K~l~~~~~g~~--~~~~~~~~~~l  209 (393)
T 1mdo_A          154 GIPVIEDAAHATGTSYKG--R-HI------GA--RGTAIFSFHAIKNITCAEGGIV--VTDNPQFADKL  209 (393)
T ss_dssp             TCCBCEECTTCTTCEETT--E-ET------TS--SSEEEEECCTTSSSCSSSCEEE--EESCHHHHHHH
T ss_pred             CCeEEEECccccCCeECC--e-ec------CC--CCeEEEeCCCCCccccccceEE--EeCCHHHHHHH
Confidence            9999999999863 3321  1 10      11  6788999994444456699999  77767743333

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.83  E-value=2.2e-20  Score=175.47  Aligned_cols=192  Identities=14%  Similarity=-0.006  Sum_probs=136.1

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCC-CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA  178 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd  178 (363)
                      ..+++.+.+++.+....   +.|. ...+..++|+++++++..    ..+++++++  |.||++++.++.  . .+.. |
T Consensus         9 ~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~----~~~~~~v~~--t~g~t~a~~~~~--~-~~~~-d   75 (353)
T 2yrr_A            9 TPIPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALFDP----GEGALVAAL--AGSGSLGMEAGL--A-NLDR-G   75 (353)
T ss_dssp             CCCCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHHCC----CTTCEEEEE--SSCHHHHHHHHH--H-TCSC-C
T ss_pred             CCCCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHhCC----CCCCceEEE--cCCcHHHHHHHH--H-HhcC-C
Confidence            34566777765443322   2232 134678999999999733    223578877  999999998883  2 2334 8


Q ss_pred             EEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHH
Q 017967          179 KVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (363)
Q Consensus       179 ~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~  256 (363)
                      +|++++|+|..+  ...++..|++++.++++  .++.+|++.+++.+++.  +++++++++|+||||.+++   +++|.+
T Consensus        76 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i~~  148 (353)
T 2yrr_A           76 PVLVLVNGAFSQRVAEMAALHGLDPEVLDFP--PGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNP---AEAIGA  148 (353)
T ss_dssp             CEEEEECSHHHHHHHHHHHHTTCCEEEEECC--TTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC---HHHHHH
T ss_pred             cEEEEcCCCchHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC---HHHHHH
Confidence            999999999875  45667899999999984  35679999999999852  3557788999999999998   457778


Q ss_pred             HHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc-ccccccceEEEEeeCChhHH
Q 017967          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLA  326 (363)
Q Consensus       257 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~l~G~RvG~i~~v~~~~~~~  326 (363)
                      +|+++|+++|+||+|. +....     ..+..+    ...+++.|++|.+ |.+|  +||+  +++ ++.+
T Consensus       149 l~~~~~~~li~D~a~~-~~~~~-----~~~~~~----~~d~~~~s~~K~~~~~~g--~G~~--~~~-~~~~  204 (353)
T 2yrr_A          149 LAKEAGALFFLDAVTT-LGMLP-----FSMRAM----GVDYAFTGSQKCLSAPPG--LAPI--AAS-LEAR  204 (353)
T ss_dssp             HHHHHTCEEEEECTTT-TTTSC-----CCHHHH----TCSEEECCTTSTTCCCSS--CEEE--EEC-HHHH
T ss_pred             HHHHcCCeEEEEcCcc-ccccc-----cccccc----CceEEEecCcccccCCCc--eEEE--EEC-HHHH
Confidence            8999999999999995 32111     122222    2357788999955 5456  6999  666 5533

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.83  E-value=1.3e-19  Score=173.67  Aligned_cols=199  Identities=19%  Similarity=0.085  Sum_probs=141.9

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCC-CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      +++++|+.|.|       .+.+.+.+++.+.+..   ..|. +..+..+||+++++++..        +++++  +.||+
T Consensus        22 ~~~~~l~~~~p-------~~~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~~gt   81 (391)
T 3dr4_A           22 SDLPRISVAAP-------RLDGNERDYVLECMDT---TWISSVGRFIVEFEKAFADYCGV--------KHAIA--CNNGT   81 (391)
T ss_dssp             ------CCCCC-------CCCSSHHHHHHHHHHH---TCCSSCSHHHHHHHHHHHHHHTC--------SEEEE--ESSHH
T ss_pred             CCCceeccCCC-------CCCHHHHHHHHHHHHc---CCccCCChHHHHHHHHHHHHhCC--------CcEEE--eCCHH
Confidence            37888888775       2335666666665544   2355 678999999999999743        25656  89999


Q ss_pred             HHHHHHHHHHHH-hCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          162 GSLRLAAALIER-YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       162 ~al~l~~~l~~~-~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      +|++++  +..+ +.+||+|+++.|+|..+...++..|++++.++++ ++++++|++.+++.++   +++++++   ++|
T Consensus        82 ~al~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~---~~~~~v~---~~n  152 (391)
T 3dr4_A           82 TALHLA--LVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDND-PRTFNLDAAKLEALIT---PRTKAIM---PVH  152 (391)
T ss_dssp             HHHHHH--HHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGSGGGCC---TTEEEEC---CBC
T ss_pred             HHHHHH--HHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecC-ccccCcCHHHHHHhcC---CCceEEE---EEC
Confidence            998888  4444 5799999999999999999999999999999985 3568899999998876   3455555   578


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCc-CCCCCCchhHHHHHHhcCCeEEEEEcCc--cccccccccceEEE
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMN  317 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~vi~~~S~S--K~~~l~G~RvG~i~  317 (363)
                      |||...+   +++|.++|+++|+++|+|++|.... +.+.     ..   ....  .+.+.|||  |.+  +|.|.|++ 
T Consensus       153 ~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-----~~---~~~~--di~~~S~s~~K~l--~~g~gg~~-  216 (391)
T 3dr4_A          153 LYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGK-----KS---GSLG--DCATFSFFGNAII--TTGEGGMI-  216 (391)
T ss_dssp             GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE-----ET---TSSS--SEEEEECBTTSSS--CCBSCEEE-
T ss_pred             CCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCe-----ee---cccC--CEEEEECCCCCcC--CcCCeEEE-
Confidence            9999866   5667778999999999999998533 2211     00   0011  26677777  666  45679999 


Q ss_pred             EeeCChhHHH
Q 017967          318 VVCSSSDLAA  327 (363)
Q Consensus       318 ~v~~~~~~~~  327 (363)
                       ++++++..+
T Consensus       217 -~~~~~~~~~  225 (391)
T 3dr4_A          217 -TTNDDDLAA  225 (391)
T ss_dssp             -EESCHHHHH
T ss_pred             -EECCHHHHH
Confidence             788776333

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.83  E-value=9.4e-19  Score=170.77  Aligned_cols=225  Identities=12%  Similarity=0.093  Sum_probs=150.1

Q ss_pred             eeccccCCCCCCccccHHHHHHHHHHHccCCCCCCC--CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHH
Q 017967           88 LGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (363)
Q Consensus        88 l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (363)
                      .+++.| .....++..+...+...........+.|.  +.....++++++++++..       ++.++   +.+|++|+.
T Consensus        75 ~~~~~P-i~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~g~-------~~~v~---~~sG~~Ai~  143 (445)
T 1qgn_A           75 DAITTP-VVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGA-------ESTLL---MASGMCAST  143 (445)
T ss_dssp             SBSSCC-BCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTC-------SEEEE---ESCHHHHHH
T ss_pred             CCcCCC-cccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHhCC-------CcEEE---eCCHHHHHH
Confidence            444444 23445666666655433222121124443  344567999999999632       23444   455669988


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCc-EEEEEcCCCC
Q 017967          166 LAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS-FILLHGCAHN  240 (363)
Q Consensus       166 l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~i~~p~N  240 (363)
                      ++  +..++.+||+|+++.|.|.+....    ++..|++++.++.+       |++.+++++++   ++ +++++++|+|
T Consensus       144 ~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-------d~~~l~~ai~~---~tv~lV~le~p~N  211 (445)
T 1qgn_A          144 VM--LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA-------DVGALELALNQ---KKVNLFFTESPTN  211 (445)
T ss_dssp             HH--HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-------CHHHHHHHHHH---SCEEEEEEESSCT
T ss_pred             HH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHHhcc---CCCCEEEEeCCCC
Confidence            88  445578999999999999987764    55789999988762       89999999984   35 7888899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEe
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVV  319 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v  319 (363)
                      |||.+++   +++|.++|+++|+++|+|++|.......      +    .+. ...++++|+||.+|..| .|+||+  +
T Consensus       212 ptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~------~----~~~-g~Div~~S~sK~~gg~gd~~~G~l--~  275 (445)
T 1qgn_A          212 PFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK------A----LAL-GADLVLHSATKFLGGHNDVLAGCI--S  275 (445)
T ss_dssp             TTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC------T----TTT-TCSEEEECTTTTTTCSSSCCCEEE--E
T ss_pred             CCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC------c----ccc-CCEEEEECCcccccccccceEEEE--E
Confidence            9999987   5577788999999999999998654321      1    111 34588999999998555 479999  6


Q ss_pred             eCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccc
Q 017967          320 CSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                      +. ++.++    .+...........+++...++...|
T Consensus       276 ~~-~~l~~----~l~~~~~~~g~~~~~~~a~~~~~~l  307 (445)
T 1qgn_A          276 GP-LKLVS----EIRNLHHILGGALNPNAAYLIIRGM  307 (445)
T ss_dssp             EC-HHHHH----HHHHHHHHHCCCCCHHHHHHHHHHG
T ss_pred             EC-HHHHH----HHHHHHHHhCCCCCHHHHHHHHHhH
Confidence            64 66444    4433332223345565555544443

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.83  E-value=2.2e-19  Score=174.20  Aligned_cols=239  Identities=13%  Similarity=0.094  Sum_probs=155.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|......|+  ..+.+.+++.+.++......| +.....++.+.+++++    +   .+++|++  ++||++|
T Consensus        53 ~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~----~---~~~~v~~--~~ggsea  120 (427)
T 3fq8_A           53 RYIDYVGTWGPAICGH--AHPEVIEALKVAMEKGTSFGA-PCALENVLAEMVNDAV----P---SIEMVRF--VNSGTEA  120 (427)
T ss_dssp             EEEESSGGGTTCTTCB--TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHS----T---TCSEEEE--ESSHHHH
T ss_pred             EEEECCCchhhhccCC--CCHHHHHHHHHHHHhCCCcCC-CCHHHHHHHHHHHHhC----C---CCCEEEE--eCCHHHH
Confidence            6899998875333333  367788887776644322333 3344455555555553    2   2578988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhC-CC-------------------CeEEEecccCCCCCCCHHHHHHHH
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDA-RV-------------------PWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~-G~-------------------~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      ++++..+...+..+++|++.+|+|.++...+... |.                   .+..++.       -|++.|++.+
T Consensus       121 ~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l  193 (427)
T 3fq8_A          121 CMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKALF  193 (427)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHHHHHHH
Confidence            9998654444445589999999997654332211 11                   1223332       1899999999


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCCCC-HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcC
Q 017967          224 KAAPGGSFILLHGCAHNPTGIDPT-PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~~s-~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~  302 (363)
                      ++.+++++++++..++|++|...+ .+.+++|.++|++||+++|+||+|.+| ..+.   ..... ......+   +.||
T Consensus       194 ~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~---~~~~~-~~~~~~d---i~t~  265 (427)
T 3fq8_A          194 AENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAY---GGVQE-KFGVTPD---LTTL  265 (427)
T ss_dssp             HHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT---THHHH-HTTCCCS---EEEE
T ss_pred             HhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc---chhhH-hcCCCCC---hhhh
Confidence            875555667776667777887766 555999999999999999999999988 4321   12221 1222223   4689


Q ss_pred             ccccccccccceEEEEeeCChhHHHHHHHHHHhhh---ccccCCCchHHHHHHhcccc
Q 017967          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA---RPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       303 SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ||.++ +|+|+||+  +++ ++    +++.+....   ....++.+++++.++...|+
T Consensus       266 sK~~~-~G~~~G~~--~~~-~~----~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~  315 (427)
T 3fq8_A          266 GKIIG-GGLPVGAY--GGK-RE----IMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE  315 (427)
T ss_dssp             CGGGG-TTSSCEEE--EEC-HH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHH
T ss_pred             hhhhh-CCcceEEE--EEc-HH----HHHhhccCCCccccCCCCcCHHHHHHHHHHHH
Confidence            99999 89999999  664 66    555444321   22334568888888776664

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.82  E-value=9.5e-20  Score=178.70  Aligned_cols=251  Identities=12%  Similarity=0.021  Sum_probs=155.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.....-|+  ..+.+.+++.+.+.... ..|....+..+.++++++++....+  ...++|++  |+||++|
T Consensus        51 ~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~ggseA  123 (459)
T 4a6r_A           51 KIIDGMAGLWCVNVGY--GRKDFAEAARRQMEELP-FYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFY--TNSGSES  123 (459)
T ss_dssp             EEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHCS-CCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEE--ESSHHHH
T ss_pred             EEEECCCchhcccCCC--CCHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCchHHH
Confidence            6899988854333333  35677777766554321 2233333444555555555544332  23578988  9999999


Q ss_pred             HHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCC-------------CeEEEecc---cCCCCCCC------
Q 017967          164 LRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYY---DPKTVGLD------  215 (363)
Q Consensus       164 l~l~~~l~~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~---~~~~~~~d------  215 (363)
                      ++.+..++...      .+++.|++.+|+|.++.......+.             .+..++..   ...++ .|      
T Consensus       124 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~  202 (459)
T 4a6r_A          124 VDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGV  202 (459)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHH
Confidence            99985554332      2468999999999887654432211             22333320   00112 34      


Q ss_pred             --HHHHHHHHHcCC-CCcEEEEEcCCCCC-CCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH
Q 017967          216 --FEGMIADIKAAP-GGSFILLHGCAHNP-TGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (363)
Q Consensus       216 --~~~l~~~l~~~~-~~~~~~~i~~p~NP-TG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  290 (363)
                        ++.|++.+.+.. +++.+++ ++|+|+ +|. .++.+.+++|.++|++||+++|+||+|.+|...+.   ...... .
T Consensus       203 ~~~~~le~~i~~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~---~~~~~~-~  277 (459)
T 4a6r_A          203 VAARWLEEKILEIGADKVAAFV-GEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE---WFGHQH-F  277 (459)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHH-H
T ss_pred             HHHHHHHHHHHHcCCCCEEEEE-ECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchHhh-c
Confidence              788888886422 2344444 555554 454 55899999999999999999999999999865431   222222 2


Q ss_pred             hcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHH---hhhccccCCCchHHHHHHhcccc
Q 017967          291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLK---RLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       291 ~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~---~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +..++++   +|||.++..|+|+||+  +++ ++    +++.+.   .......++.++++|.++...|+
T Consensus       278 ~~~pdi~---t~sK~l~gg~~~lg~v--~~~-~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~  337 (459)
T 4a6r_A          278 GFQPDLF---TAAKGLSSGYLPIGAV--FVG-KR----VAEGLIAGGDFNHGFTYSGHPVCAAVAHANVA  337 (459)
T ss_dssp             TCCCSEE---EECGGGGTTSSCCEEE--EEC-HH----HHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHH
T ss_pred             CCCCCee---ehhhhhcCCCCCccce--eeC-HH----HHHHhhcCCCcccCCCCCCCHHHHHHHHHHHH
Confidence            3333433   6899998544999999  665 77    444444   22223345778889988877766

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.82  E-value=1.3e-19  Score=173.87  Aligned_cols=236  Identities=15%  Similarity=0.085  Sum_probs=156.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCC--CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY--LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..+.+...-|+  ..+.+.+++.+.+.... +.|  .+.....++++.+++++    +    .+++++  |+||+
T Consensus        37 ~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~----~----~~~v~~--~~gg~  103 (395)
T 3nx3_A           37 KYLDFSSGIGVCALGY--NHAKFNAKIKAQVDKLL-HTSNLYYNENIAAAAKNLAKAS----A----LERVFF--TNSGT  103 (395)
T ss_dssp             EEEESSHHHHTCTTCB--SCHHHHHHHHHHHTTCS-CCCTTSBCHHHHHHHHHHHHHH----T----CSEEEE--ESSHH
T ss_pred             EEEECCCcHHhccCCC--CCHHHHHHHHHHHHhcc-ccccccCCHHHHHHHHHHHHhc----C----CCeEEE--eCCHH
Confidence            6899998854333332  35677777776664321 212  12334456666666664    2    378888  99999


Q ss_pred             HHHHHHHHHHHHh-----CCCCEEEEcCCCCcchHHHHhhC-------------CCCeEEEecccCCCCCCCHHHHHHHH
Q 017967          162 GSLRLAAALIERY-----FPGAKVLISSPTWGNHKNIFNDA-------------RVPWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       162 ~al~l~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      +|++++..++...     .++|+|++.+|+|.++.......             +.++..++.       .|++.|++++
T Consensus       104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l  176 (395)
T 3nx3_A          104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLV  176 (395)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhc
Confidence            9999985544333     46799999999998775433322             234444443       2789998887


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcC
Q 017967          224 KAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~  302 (363)
                      +   ++++++++.+++|++|.. ++.+++++|.++|++||+++|+||+|.+|...+.   ...... .+...+   +.+|
T Consensus       177 ~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~~~-~~~~~d---~~t~  246 (395)
T 3nx3_A          177 N---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK---FFAYEH-AQILPD---IMTS  246 (395)
T ss_dssp             C---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCS---EEEE
T ss_pred             c---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc---chhHHh-cCCCCC---EEEe
Confidence            6   345566656666777766 7889999999999999999999999998864321   111111 121222   4478


Q ss_pred             ccccccccccceEEEEeeCChhHHHHH-HHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          303 SKNLGLYAERIGAMNVVCSSSDLAARV-KSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       303 SK~~~l~G~RvG~i~~v~~~~~~~~~~-~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ||.++ .|+|+||+  +++ ++    + ++.+.........+.++++|.++...|+
T Consensus       247 sK~~~-~G~~~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~aa~aal~  294 (395)
T 3nx3_A          247 AKALG-CGLSVGAF--VIN-QK----VASNSLEAGDHGSTYGGNPLVCAGVNAVFE  294 (395)
T ss_dssp             CGGGT-TTSCCEEE--EEC-HH----HHHHHSCTTCCSSCBSCCHHHHHHHHHHHH
T ss_pred             ccccc-CCCceEEE--EEc-hh----hhhhhcCCcccCCCCCCCHHHHHHHHHHHH
Confidence            99998 59999999  665 55    4 5555444334455788888888877665

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.82  E-value=2.7e-19  Score=171.95  Aligned_cols=192  Identities=17%  Similarity=0.092  Sum_probs=138.4

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCCCcc--hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLPIEG--LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFP  176 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~G--~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~  176 (363)
                      |.+.+.+.+++.+.+..    .|.+..|  ..++|+++|+++..        +++++  ++||+++++++  +..+ +.+
T Consensus         8 p~~~~~v~~a~~~~~~~----~~~~~~g~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~l~~~~   71 (394)
T 1o69_A            8 PHMGGNELKYIEEVFKS----NYIAPLGEFVNRFEQSVKDYSKS--------ENALA--LNSATAALHLA--LRVAGVKQ   71 (394)
T ss_dssp             ----CCHHHHHHHHHHH----TTTSCTTHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH--HHHTTCCT
T ss_pred             CCCCHHHHHHHHHHHHc----CCccCCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHcCCCC
Confidence            34455666676665543    3656567  89999999999732        57877  99999999988  4444 579


Q ss_pred             CCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHH
Q 017967          177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (363)
Q Consensus       177 gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~  256 (363)
                      ||+|+++.|+|..+...++..|++++.++++  +++.+|++.+++.+++.+.+++++++++   |||..   .++++|.+
T Consensus        72 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~---~~l~~i~~  143 (394)
T 1o69_A           72 DDIVLASSFTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNA---AKMDEIVE  143 (394)
T ss_dssp             TCEEEEESSSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCC---CCHHHHHH
T ss_pred             CCEEEECCCccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCCh---hhHHHHHH
Confidence            9999999999999999999999999999984  4678999999999985321344555553   89965   45677778


Q ss_pred             HHHhcCCeEEEecCCC-CCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHH
Q 017967          257 VIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA  327 (363)
Q Consensus       257 ~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~  327 (363)
                      +|+++|+++|+||+|. ++.+.+.  ..      .....  +.+.||||..+++|.|+||+  ++++++.++
T Consensus       144 l~~~~~~~li~Dea~~~g~~~~~~--~~------~~~~~--~~~~s~s~~K~l~~~~~G~~--~~~~~~l~~  203 (394)
T 1o69_A          144 ICKENDIVLIEDAAEALGSFYKNK--AL------GTFGE--FGVYSYNGNKIITTSGGGML--IGKNKEKIE  203 (394)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTE--ET------TSSSS--EEEEECCTTSSSCCSSCEEE--EESCHHHHH
T ss_pred             HHHHcCCEEEEECcCcccceeCCc--cc------ccccC--cEEEEEeCCccCCCCCceEE--EECCHHHHH
Confidence            8999999999999998 5655321  00      01112  45566654445567899999  776677333

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.82  E-value=2.1e-19  Score=174.51  Aligned_cols=247  Identities=16%  Similarity=0.112  Sum_probs=157.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.....-|+  ..+.+.+++.+.+...... |.+.....+|++++++++.       ..++|++  ++||++|
T Consensus        54 ~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~-------~~~~v~~--~~~Gsea  121 (429)
T 3k28_A           54 EYIDYVLSWGPLIHGH--ANDRVVEALKAVAERGTSF-GAPTEIENKLAKLVIERVP-------SIEIVRM--VNSGTEA  121 (429)
T ss_dssp             EEEESCGGGTTCTTCB--SCHHHHHHHHHHHHHCSCC-SSCCHHHHHHHHHHHHHST-------TCSEEEE--ESSHHHH
T ss_pred             EEEECCCChhhcccCC--CCHHHHHHHHHHHhhCcCc-CCCCHHHHHHHHHHHHhCC-------CCCEEEE--eCChHHH
Confidence            7899998875333332  3567777776665443323 4467778899999999853       2578988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEEecccCCCCC------------CCHHHHHHHHHcCCCCc
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVG------------LDFEGMIADIKAAPGGS  230 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~------------~d~~~l~~~l~~~~~~~  230 (363)
                      ++++..+.....++++|++.+|+|.++...+. ..|..+..++........            -|++.+++.+++.++++
T Consensus       122 ~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~  201 (429)
T 3k28_A          122 TMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDI  201 (429)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGE
T ss_pred             HHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCE
Confidence            99985544333467899999999976643332 223222222210000000            17899999887533344


Q ss_pred             EEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          231 FILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       231 ~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      .++++...+|++|... +.+++++|.++|++||+++|+||+|.+| ..+   ...... ......+   +.+|||.++ .
T Consensus       202 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~-~~~~~~d---i~t~sK~~~-~  272 (429)
T 3k28_A          202 ACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA---YNCGQG-YYGVTPD---LTCLGKVIG-G  272 (429)
T ss_dssp             EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS---TTHHHH-HHTCCCS---EEEECGGGG-T
T ss_pred             EEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchHHH-HhCCCCc---eehhhhhhc-C
Confidence            4555444444555544 6788999999999999999999999998 432   122222 2232233   347999998 6


Q ss_pred             cccceEEEEeeCChhHHHHHHHHHHhhh---ccccCCCchHHHHHHhccccc
Q 017967          310 AERIGAMNVVCSSSDLAARVKSQLKRLA---RPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       310 G~RvG~i~~v~~~~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      |+|+||+  +++ ++    +++.+....   ....++.++++|.++...|+.
T Consensus       273 G~~iG~~--~~~-~~----~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~  317 (429)
T 3k28_A          273 GLPVGAY--GGK-AE----IMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQ  317 (429)
T ss_dssp             TSCCEEE--EEC-HH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHT
T ss_pred             CCCeEEE--EEc-HH----HHhhhccCCCccccCCCCCChHHHHHHHHHHHH
Confidence            9999999  665 66    555444321   223457788888888776653

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.82  E-value=1.4e-19  Score=172.02  Aligned_cols=186  Identities=16%  Similarity=0.160  Sum_probs=142.2

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCEE
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~V  180 (363)
                      +.+.+.+++.+.+..   ..|.+..+..++++++++++..        +++++  +.||++|++++  +... +.+||+|
T Consensus        14 ~~~~v~~a~~~~~~~---~~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~sGt~al~~a--l~~~~~~~gd~V   78 (367)
T 3nyt_A           14 IKDKIDAGIQRVLRH---GQYILGPEVTELEDRLADFVGA--------KYCIS--CANGTDALQIV--QMALGVGPGDEV   78 (367)
T ss_dssp             HHHHHHHHHHHHHHH---CCCSSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEE
T ss_pred             cCHHHHHHHHHHHhc---CCccCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHhCCCCcCEE
Confidence            456777777766644   2466778899999999999733        36766  89999999888  4444 5699999


Q ss_pred             EEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHh
Q 017967          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (363)
Q Consensus       181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~  260 (363)
                      +++.|+|..+...++..|++++.++++ ++++.+|++.++++++   +++++++   |+||||...+   +++|.++|++
T Consensus        79 i~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~---~~~~~G~~~~---~~~i~~la~~  148 (367)
T 3nyt_A           79 ITPGFTYVATAETVALLGAKPVYVDID-PRTYNLDPQLLEAAIT---PRTKAII---PVSLYGQCAD---FDAINAIASK  148 (367)
T ss_dssp             EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCGGGTGGGCC---TTEEEEC---CBCGGGCCCC---HHHHHHHHHH
T ss_pred             EECCCccHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHhcC---cCCcEEE---eeCCccChhh---HHHHHHHHHH
Confidence            999999999999999999999999985 3458899999999885   3455555   7899997665   5667777999


Q ss_pred             cCCeEEEecCCCC-CcCCCCCCchhHHHHHHhcCCeEEEEEcC--ccccccccccceEEEEeeCChhH
Q 017967          261 KNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDL  325 (363)
Q Consensus       261 ~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~vi~~~S~--SK~~~l~G~RvG~i~~v~~~~~~  325 (363)
                      +|+++|+|++|.. ..+++.   ...     ..+  .+++.||  +|.++.+|. .|++  ++++++.
T Consensus       149 ~~~~li~D~a~~~g~~~~~~---~~~-----~~~--di~~~Sf~~~K~l~~~g~-gg~~--~~~~~~l  203 (367)
T 3nyt_A          149 YGIPVIEDAAQSFGASYKGK---RSC-----NLS--TVACTSFFPSAPLGCYGD-GGAI--FTNDDEL  203 (367)
T ss_dssp             TTCCBEEECTTTTTCEETTE---ETT-----SSS--SEEEEECCTTSSSCCSSC-CEEE--EESCHHH
T ss_pred             cCCEEEEECccccCCeECCe---ecc-----CCC--CEEEEECCCCCcCCCcCc-eeEE--EeCCHHH
Confidence            9999999999874 333211   000     111  4778887  899996687 8998  7877773

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.82  E-value=7.5e-19  Score=169.93  Aligned_cols=165  Identities=16%  Similarity=0.109  Sum_probs=129.7

Q ss_pred             CCCCCC--cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----
Q 017967          120 KEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----  193 (363)
Q Consensus       120 ~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----  193 (363)
                      +.|...  .+..++++.+++++..        +++++  |.||++|+.++  +..++.+||+|+++.|.|......    
T Consensus        48 ~~y~~~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~a~~~a--l~~l~~~gd~vi~~~~~~~~~~~~~~~~  115 (412)
T 2cb1_A           48 YVYARQKDPTAKALEERLKALEGA--------LEAVV--LASGQAATFAA--LLALLRPGDEVVAAKGLFGQTIGLFGQV  115 (412)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEETTCCHHHHHHHHHT
T ss_pred             cCcCCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHHH
Confidence            567643  6788999999999632        36766  99999999888  444467999999999999876554    


Q ss_pred             HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC
Q 017967          194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (363)
Q Consensus       194 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~  273 (363)
                      ++..|++++.++.        |++.+++.++   ++++++++++|+||||.+++   +++|.++|+++|+++|+|++|..
T Consensus       116 ~~~~g~~~~~~~~--------~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~~  181 (412)
T 2cb1_A          116 LSLMGVTVRYVDP--------EPEAVREALS---AKTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFGA  181 (412)
T ss_dssp             TTTTTCEEEEECS--------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGT
T ss_pred             HHHcCCEEEEECC--------CHHHHHHHhc---cCCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcc
Confidence            4467999888875        3889988886   35778888999999999986   77788889999999999999987


Q ss_pred             CcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          274 FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      +....   .  +.     .....+++.|+||.++.+|.|+|++  ++.+
T Consensus       182 ~~~~~---~--~~-----~~~~di~~~S~~K~~~~~~~~~G~~--~~~~  218 (412)
T 2cb1_A          182 AGALC---R--PL-----AWGAHVVVESLTKWASGHGSVLGGA--VLSR  218 (412)
T ss_dssp             TTTSC---C--GG-----GGTCSEEEEETTTTTTCSSCCCCEE--EEEC
T ss_pred             ccccC---C--cc-----ccCCeEEEECCcccccCCCCcEEEE--EEec
Confidence            73211   1  11     1246789999999999899999999  5443

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.82  E-value=1.7e-19  Score=171.50  Aligned_cols=190  Identities=14%  Similarity=0.038  Sum_probs=131.9

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCCC--cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g  177 (363)
                      ..+++.+.+++.+...    ..|.+.  .-..++++.+++++.    .+.+.+.+++  |.||+++++++  +...+.+|
T Consensus        28 ~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~la~~~g----~~~~~~~i~~--~~ggt~al~~~--~~~~~~~g   95 (376)
T 3f0h_A           28 VMSSEEVRAIGAEQVP----YFRTTEFSSTMLENEKFMLEYAK----APEGSKAVFM--TCSSTGSMEAV--VMNCFTKK   95 (376)
T ss_dssp             CCCCHHHHHHHTSCCC----CCSSHHHHHHHHHHHHHHHHHHT----CCTTCEEEEE--SSCHHHHHHHH--HHHHCCTT
T ss_pred             CCCcHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHHHHHhC----CCCCceEEEE--cCChhHHHHHH--HHhccCCC
Confidence            3456777777543221    123221  223455566666643    2222234544  88999999988  44456799


Q ss_pred             CEEEEcCCCCcchH--HHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHH
Q 017967          178 AKVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIA  255 (363)
Q Consensus       178 d~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~  255 (363)
                      |+|+++.|+|..+.  ..+...|++++.++.+  .++.+|++.+++.+.   ++++++++++||||||.+++   +++|.
T Consensus        96 d~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~  167 (376)
T 3f0h_A           96 DKVLVIDGGSFGHRFVQLCEIHEIPYVALKLE--HGKKLTKEKLYEYDN---QNFTGLLVNVDETSTAVLYD---TMMIG  167 (376)
T ss_dssp             CCEEEEESSHHHHHHHHHHHHTTCCEEEEECC--TTCCCCHHHHHTTTT---SCCCEEEEESEETTTTEECC---HHHHH
T ss_pred             CeEEEEeCChhhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHhhc---cCceEEEEecccCCcceecC---HHHHH
Confidence            99999999776654  3467889999999983  457899999998765   35668888999999999998   77788


Q ss_pred             HHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeCChh
Q 017967          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSD  324 (363)
Q Consensus       256 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~~~~  324 (363)
                      ++|+++|+++|+|++|......-      ...    .....+++.|+||.++ .+|  +|++  +++ ++
T Consensus       168 ~l~~~~~~~li~D~~~~~~~~~~------~~~----~~~~d~~~~s~~K~l~~~~G--~g~~--~~~-~~  222 (376)
T 3f0h_A          168 EFCKKNNMFFVCDCVSAFLADPF------NMN----ECGADVMITGSQKVLACPPG--ISVI--VLA-PR  222 (376)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSCC------CHH----HHTCSEEEEETTTTTCCCSS--CEEE--EEC-HH
T ss_pred             HHHHHcCCEEEEEcCccccCccc------ccc----ccCccEEEecCcccccCCCc--eEEE--EEC-HH
Confidence            88999999999999987654321      111    1123588899999998 566  5777  554 66

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.82  E-value=2.7e-19  Score=177.93  Aligned_cols=205  Identities=13%  Similarity=0.023  Sum_probs=150.7

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcE--EEEeccchhHHHHHHHHHHHHhCCC--
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV--ATVQGLSGTGSLRLAAALIERYFPG--  177 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i--~~~~t~ggt~al~l~~~l~~~~~~g--  177 (363)
                      +.+.+.+++........ ..|....+..++++++++++....+...+++++  ++  |.||++++.++...+  ..+|  
T Consensus       112 ~~~~~~~~~~~~~~~~~-~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~--t~ggt~a~~~al~a~--~~~g~~  186 (514)
T 3mad_A          112 HIAFLNEVYALQSQSNP-LHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV--TSGGTESLLLAMKTY--RDWARA  186 (514)
T ss_dssp             HHHHHHHHHHHHTTCCT-TCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEE--ESSHHHHHHHHHHHH--HHHHHH
T ss_pred             HHHHHHHHHHHHhhcCC-cccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEE--cCcHHHHHHHHHHHH--HHHhhh
Confidence            34555555554443322 455556677888888877777666665555777  66  999999999884433  3344  


Q ss_pred             ------CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHH
Q 017967          178 ------AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQW  251 (363)
Q Consensus       178 ------d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~  251 (363)
                            |+|+++.|+|..+...++..|++++.++++  .++.+|++.|+++++   ++++++++++||||||.+.+   +
T Consensus       187 ~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~~---l  258 (514)
T 3mad_A          187 TKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLD--ADYRADVAAMREAIT---PNTVVVAGSAPGYPHGVVDP---I  258 (514)
T ss_dssp             HHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBC--TTSCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCCC---H
T ss_pred             hcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeC--CCCCCCHHHHHHHhc---cCCEEEEEeCCCCCCccccC---H
Confidence                  999999999999999999999999999984  368899999999987   35778888999999999987   5


Q ss_pred             HHHHHHHHhcCCeEEEecCCCCCcCC---CCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          252 EKIADVIQEKNHIPFFDVAYQGFASG---SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       252 ~~i~~~~~~~~~~ii~De~y~~~~~~---~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      ++|.++|+++|+++|+|++|.++...   ....+...+.  .....-.+++.|++|.++ .|.++||+  ++.++.
T Consensus       259 ~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~--~~~~~~  329 (514)
T 3mad_A          259 PEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD--FRLEGVTSVSADTHKYGY-GAKGTSVI--LYRRPD  329 (514)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS--TTSTTCCEEEECTTTTTC-CCSSCEEE--EESSHH
T ss_pred             HHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc--ccCCCCcEEEECchhccC-CCCCeEEE--EEeCHH
Confidence            67777899999999999999987531   0000000000  011234677899999864 78999999  777654

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.82  E-value=1.9e-19  Score=171.45  Aligned_cols=197  Identities=13%  Similarity=0.037  Sum_probs=138.3

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCCC--cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh---
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---  174 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~---  174 (363)
                      ..+.+.+.+++.+...    ..|.+.  ....++++++++++....  .+++++|++  |.||+++++++  +..+.   
T Consensus        14 ~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~~--~~g~t~al~~~--~~~~~~~~   83 (385)
T 2bkw_A           14 IILSGAVQKALDVPSL----GHTSPEFVSIFQRVLKNTRAVFKSAA--ASKSQPFVL--AGSGTLGWDIF--ASNFILSK   83 (385)
T ss_dssp             CCCCHHHHHTTSCCCC----CTTSHHHHHHHHHHHHHHHHHTTCCG--GGTCEEEEE--ESCTTHHHHHH--HHHHSCTT
T ss_pred             cCchHHHHHHHhcccc----ccCCHHHHHHHHHHHHHHHHHhCCCC--CCCCceEEE--cCchHHHHHHH--HHHHhccC
Confidence            4456777776533221    123232  246778899999975532  234678888  99999999988  34444   


Q ss_pred             CCCCEEEEc-CCCCcchH-HHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHH
Q 017967          175 FPGAKVLIS-SPTWGNHK-NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWE  252 (363)
Q Consensus       175 ~~gd~Vlv~-~P~y~~~~-~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~  252 (363)
                      .+||+|+++ .|+|..+. ..++..|++++.+++. +.++.+|++.+++++++  .+++++++++|+||||.+++   ++
T Consensus        84 ~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~---l~  157 (385)
T 2bkw_A           84 APNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSD---LK  157 (385)
T ss_dssp             CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEECC---HH
T ss_pred             CCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC-CCCCCCCHHHHHHHHhc--CCCCEEEEEccCCCcCeEcC---HH
Confidence            799999888 55676663 6778899999999872 23567999999999974  23557778999999999998   45


Q ss_pred             HHHHHHHhc--CCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc-ccccccceEEEEeeCChhHHH
Q 017967          253 KIADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAA  327 (363)
Q Consensus       253 ~i~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~l~G~RvG~i~~v~~~~~~~~  327 (363)
                      +|.++|+++  |+++|+|++|......   .   .+    ......+++.|+||.+ |.+|+  ||+  +++ ++.++
T Consensus       158 ~i~~~~~~~~~~~~li~D~a~~~~~~~---~---~~----~~~~~d~~~~s~~K~~~~~~G~--G~~--~~~-~~~~~  220 (385)
T 2bkw_A          158 AISQAIKQTSPETFFVVDAVCSIGCEE---F---EF----DEWGVDFALTASQKAIGAPAGL--SIS--LCS-SRFMD  220 (385)
T ss_dssp             HHHHHHHHHCTTSEEEEECTTTTTTSC---C---CT----TTTTCSEEEEESSSTTCCCSCE--EEE--EEC-HHHHH
T ss_pred             HHHHHHHhhCCCCEEEEECccccCCcc---c---cc----cccCceEEEecCccccccCCcc--eEE--EEc-HHHHH
Confidence            778889999  9999999998632211   0   11    1123467889999965 45675  999  665 55443

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.82  E-value=4.2e-19  Score=171.71  Aligned_cols=194  Identities=19%  Similarity=0.093  Sum_probs=141.8

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCCCcc----hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-h
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-Y  174 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~  174 (363)
                      +.+++.+.+++.+.+.......|++..|    ..++++.+++++..        +++++  +.+|++++.++  +..+ +
T Consensus        12 ~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~--------~~~i~--~~~gt~al~~~--~~~~~~   79 (418)
T 2c81_A           12 PQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV--------PYCVP--TTSGSTALMLA--LEALGI   79 (418)
T ss_dssp             SCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHTTC
T ss_pred             CCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHcCC
Confidence            4456788888877765433233776667    66777777777522        13444  67789998888  4444 5


Q ss_pred             CCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHH
Q 017967          175 FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (363)
Q Consensus       175 ~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i  254 (363)
                      .+||+|+++.|+|..+...++..|++++.++++ ++++.+|++.+++.+++   +++++++   +||||...   ++++|
T Consensus        80 ~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~i~~---~~~~v~~---~~~~G~~~---~~~~i  149 (418)
T 2c81_A           80 GEGDEVIVPSLTWIATATAVLNVNALPVFVDVE-ADTYCIDPQLIKSAITD---KTKAIIP---VHLFGSMA---NMDEI  149 (418)
T ss_dssp             CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHGGGCCT---TEEEECC---BCCTTCCC---CHHHH
T ss_pred             CCcCEEEECCCccHhHHHHHHHcCCEEEEEecC-CCCCCcCHHHHHHhhCC---CCeEEEE---eCCcCCcc---cHHHH
Confidence            699999999999999999999999999999984 34688999999988862   4556654   46999874   56778


Q ss_pred             HHHHHhcCCeEEEecCCCCCc-CCCCCCchhHHHHHHhcCCeEEEEEcC--ccccccccccceEEEEeeCChhHHHHH
Q 017967          255 ADVIQEKNHIPFFDVAYQGFA-SGSLDNDASSVRLFATRGMELLVAQSY--SKNLGLYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       255 ~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~vi~~~S~--SK~~~l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      .++|+++|+++|+|++|..+. ++..     ..   ....  .+.+.||  ||.++. | |+||+  ++++++.++++
T Consensus       150 ~~~~~~~~~~li~D~a~~~~~~~~~~-----~~---~~~~--~~~~~s~s~~K~~~~-g-~~g~~--~~~~~~l~~~~  213 (418)
T 2c81_A          150 NEIAQEHNLFVIEDCAQSHGSVWNNQ-----RA---GTIG--DIGAFSCQQGKVLTA-G-EGGII--VTKNPRLFELI  213 (418)
T ss_dssp             HHHHHHTTCEEEEECTTCTTCEETTE-----ET---TSSS--SEEEEECCTTSSSCS-S-SCEEE--EESCHHHHHHH
T ss_pred             HHHHHHCCCEEEEECcccccCccCCE-----ec---cccc--ceEEEeccCCcccCC-C-CeEEE--EECCHHHHHHH
Confidence            888999999999999999886 4321     11   0111  2667777  999996 8 99999  77667744433

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.82  E-value=2e-19  Score=175.94  Aligned_cols=247  Identities=11%  Similarity=-0.002  Sum_probs=154.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCC-CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|......|+  ..+.+.+++.+.+..... ..+.+.....++++.+++++.    ..  .+ |++  |+||++
T Consensus        50 ~~lD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~--~~-v~~--~~ggse  118 (452)
T 3n5m_A           50 RYLDGMSGLWCVNSGY--GRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLG----GE--YV-IFF--SNSGSE  118 (452)
T ss_dssp             EEEETTHHHHTCTTCB--CCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHT----SC--EE-EEE--ESSHHH
T ss_pred             EEEECCcchhhccCCC--CCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCC----CC--ce-EEE--eCchHH
Confidence            6899998853333343  356778887776643211 111223334455555555532    11  23 766  999999


Q ss_pred             HHHHHHHHHHHh---C---CCCEEEEcCCCCcchHHHHhhCCCC-------------eEEEecccCCCCCC-C-------
Q 017967          163 SLRLAAALIERY---F---PGAKVLISSPTWGNHKNIFNDARVP-------------WSEYRYYDPKTVGL-D-------  215 (363)
Q Consensus       163 al~l~~~l~~~~---~---~gd~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~-d-------  215 (363)
                      |++.+..++...   .   ++++|++.+|+|.++.......+..             +..++..+...+.. |       
T Consensus       119 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (452)
T 3n5m_A          119 ANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDV  198 (452)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHH
Confidence            999986554322   4   7799999999998876544433221             23333210000111 1       


Q ss_pred             --HHHHHHHHH-cCCCCcEEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH
Q 017967          216 --FEGMIADIK-AAPGGSFILLHGCA-HNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (363)
Q Consensus       216 --~~~l~~~l~-~~~~~~~~~~i~~p-~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  290 (363)
                        ++.|++.++ ..+++++++++.++ || ||.++ +.+.+++|.++|++||+++|+||+|.+|...+.   ..... ..
T Consensus       199 ~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~~~~-~~  273 (452)
T 3n5m_A          199 ECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK---AFGFM-NY  273 (452)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG-GT
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc---cchhh-hc
Confidence              889999887 22234566666666 89 99766 888899999999999999999999999865431   11111 11


Q ss_pred             hcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHh------hhccccCCCchHHHHHHhcccc
Q 017967          291 TRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKR------LARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       291 ~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~------~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +...+   +.+|||.++. | +|+||+  +++ ++    +++.+..      ......++.++++|.++...|+
T Consensus       274 ~~~~d---i~t~sK~l~~-G~~~ig~~--~~~-~~----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~  336 (452)
T 3n5m_A          274 DVKPD---IITMAKGITS-AYLPLSAT--AVK-RE----IYEAFKGKGEYEFFRHINTFGGNPAACALALKNLE  336 (452)
T ss_dssp             TCCCS---EEEECGGGGT-TSSCCEEE--EEE-HH----HHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHH
T ss_pred             CCCCC---EEeecccccC-CCcceEEE--EEC-HH----HHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHH
Confidence            22223   3368999985 9 999999  665 66    5555532      1123445778888888877665

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.82  E-value=7.3e-20  Score=179.30  Aligned_cols=249  Identities=13%  Similarity=0.014  Sum_probs=155.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+||+..|.+...-|+  -.+.+.+++.+.+...  ..|....+..+.+.++++++....+.. ..++|++  |+||++|
T Consensus        65 ~ylD~~~~~~~~~lGh--~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~--~~sGseA  137 (453)
T 4ffc_A           65 SFIDLGAGIAVTTVGA--SHPAVAAAIADQATHF--THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTAL--FNSGAEA  137 (453)
T ss_dssp             EEEESSHHHHTCTTCT--TCHHHHHHHHHHHHHC--SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEE--ESSHHHH
T ss_pred             EEEEcCCCcccCcCCC--CCHHHHHHHHHHHHhc--cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEE--eCcHHHH
Confidence            6899998854333333  2566777766655332  223333333444444444443322211 1468888  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCC--------------CCeEEEeccc--CCCCCCC--------HHHH
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR--------------VPWSEYRYYD--PKTVGLD--------FEGM  219 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G--------------~~~~~v~~~~--~~~~~~d--------~~~l  219 (363)
                      ++++..+......++.|++.+++|.++.......+              ..+..++...  .+.++.+        ++.|
T Consensus       138 ~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l  217 (453)
T 4ffc_A          138 VENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRI  217 (453)
T ss_dssp             HHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHH
Confidence            99985544333355899999999987765443221              1344555421  1223444        2344


Q ss_pred             HHHHHcCCCCcEEEEEcCCCCCCC--CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEE
Q 017967          220 IADIKAAPGGSFILLHGCAHNPTG--IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (363)
Q Consensus       220 ~~~l~~~~~~~~~~~i~~p~NPTG--~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi  297 (363)
                      ++.+.   ...+..++++|.||+|  ...+.+.+++|.++|++||+++|+||+|.+|...+.   ......+ ....+  
T Consensus       218 ~~~i~---~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~a~~~~-~~~pd--  288 (453)
T 4ffc_A          218 ETQIG---AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA---WFASEHE-GIVPD--  288 (453)
T ss_dssp             HHHTC---GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCS--
T ss_pred             HHhcC---CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc---cchhhhc-CCCcc--
Confidence            44332   2345666678899887  455788899999999999999999999999865431   1122221 22222  


Q ss_pred             EEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       298 ~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       +.+|||.++. |+|+||+  +++ ++    +++.+........++.++++|.++...|+
T Consensus       289 -i~t~sK~~~~-G~~~G~~--~~~-~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~  339 (453)
T 4ffc_A          289 -IVTMAKGIAG-GMPLSAV--TGR-AE----LMDAVYAGGLGGTYGGNPVTCAAAVAALG  339 (453)
T ss_dssp             -EEEECGGGGT-TSSCEEE--EEE-HH----HHTTSCTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred             -hHhhhhhhcC-CcCeEEE--EEC-HH----HHhhhcccCcCCCCCcCHHHHHHHHHHHH
Confidence             4478999985 9999999  665 66    55555554455566888999988877665

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.81  E-value=6.7e-20  Score=176.13  Aligned_cols=213  Identities=15%  Similarity=0.133  Sum_probs=140.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCc---chHH--HHH-----HHHHHHhcCCCCcccCCcEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE---GLAA--FNK-----VTAELLFGADNSVLKEQRVA  153 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~---G~~~--lr~-----aia~~l~~~~~~~~~~~~i~  153 (363)
                      +.|+|..|.+      +. ++.+.+++.+.+.......|+...   |.+.  +++     .+++++..      ++++|+
T Consensus        24 ~~i~~~~~~~------~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~------~~~~i~   90 (407)
T 2dkj_A           24 EGLELIASEN------FV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA------AWANVQ   90 (407)
T ss_dssp             TSEECCTTCC------CC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC------SEEECC
T ss_pred             cceeeccCCC------CC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC------CcceEE
Confidence            7899998874      22 677888876665432224564332   4432  333     66666522      134454


Q ss_pred             EEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchH---HHHhhCCCCeEEEecc-cCCCCCCCHHHHHHHHHcCCCC
Q 017967          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK---NIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       154 ~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      +  ++ |++++.++.  ...+.+||+|++++|+|..+.   ..++..|.++..+++. +++++.+|++.+++.+++.  +
T Consensus        91 ~--~s-Gt~a~~~~~--~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~  163 (407)
T 2dkj_A           91 P--HS-GSQANMAVY--MALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEH--R  163 (407)
T ss_dssp             C--SS-HHHHHHHHH--HHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHH--C
T ss_pred             e--cc-hHHHHHHHH--HHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhc--C
Confidence            4  44 566988884  334679999999999998883   4455566654555542 2246789999999999731  3


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC-CcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l  308 (363)
                      ++++++++|+||  ...+   +++|.++|+++|+++|+||+|.. +.+.+...   ..   .+  ...+++.||||.  +
T Consensus       164 ~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~---~~--~~di~~~s~sK~--l  228 (407)
T 2dkj_A          164 PKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHP---NP---LP--YAHVVTSTTHKT--L  228 (407)
T ss_dssp             CSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSC---CC---TT--TCSEEEEESSGG--G
T ss_pred             CeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccC---Cc---cc--cccEEEEecccc--C
Confidence            456666999998  4444   77888899999999999999987 54332111   00   11  257889999994  5


Q ss_pred             ccccceEEEEeeCChhHHHHHHHHHHhhh
Q 017967          309 YAERIGAMNVVCSSSDLAARVKSQLKRLA  337 (363)
Q Consensus       309 ~G~RvG~i~~v~~~~~~~~~~~~~l~~~~  337 (363)
                      +|.|+||+  ++++++    +++.+....
T Consensus       229 ~g~~~G~~--~~~~~~----~~~~l~~~~  251 (407)
T 2dkj_A          229 RGPRGGLI--LSNDPE----LGKRIDKLI  251 (407)
T ss_dssp             CCCSCEEE--EESCHH----HHHHHHHHH
T ss_pred             CCCCceEE--EECCHH----HHHHHHhhh
Confidence            69999999  776566    444454443

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.81  E-value=2.6e-19  Score=175.13  Aligned_cols=239  Identities=15%  Similarity=0.074  Sum_probs=147.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+||++.|.....-++  .++.+.+++.+.+....  .|   .+..++++++++++....+   ..++|++  ++||++|
T Consensus        58 ~~iD~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~--~~---~~~~~~~~~la~~l~~~~~---~~~~v~~--~~gg~eA  125 (453)
T 2cy8_A           58 VYLDFFGGHGALVLGH--GHPRVNAAIAEALSHGV--QY---AASHPLEVRWAERIVAAFP---SIRKLRF--TGSGTET  125 (453)
T ss_dssp             EEEESCTTTTSCTTCB--TCHHHHHHHHHHHTTTC--SS---CSSCHHHHHHHHHHHHHCT---TCSEEEE--ESCHHHH
T ss_pred             EEEECcccHhhcccCC--CCHHHHHHHHHHHHhCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEE--eCCHHHH
Confidence            6889988864322232  46778888777664422  23   2356788888888866542   3678988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-----------CCCC------eEEEecccCCCCCCCHHHHHHHHHcC
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFND-----------ARVP------WSEYRYYDPKTVGLDFEGMIADIKAA  226 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-----------~G~~------~~~v~~~~~~~~~~d~~~l~~~l~~~  226 (363)
                      ++++..+...+..++.|++.+|+|.++...+..           .|+.      +..++.       .|++.+++.+++.
T Consensus       126 ~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~  198 (453)
T 2cy8_A          126 TLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANH  198 (453)
T ss_dssp             HHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhc
Confidence            998855432244557899999999876543321           2331      222322       3899999998742


Q ss_pred             CCCcEEEEEcCC-CCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcc
Q 017967          227 PGGSFILLHGCA-HNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (363)
Q Consensus       227 ~~~~~~~~i~~p-~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  304 (363)
                      ++++++++ ++| +||||.+ .+.+++++|.++|++||+++|+||+|.+|..+    ...... ......++   .||||
T Consensus       199 ~~~~~~vi-~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g----~~~~~~-~~~~~~di---~s~sK  269 (453)
T 2cy8_A          199 GSDIAAFI-AEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVG----NHGMQA-LLDVQPDL---TCLAK  269 (453)
T ss_dssp             GGGEEEEE-ECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTC----TTHHHH-HHTCCCSE---EEEEG
T ss_pred             CCCEEEEE-ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccC----chhhhH-HhCCCCcE---EEECh
Confidence            22344554 555 4779976 47999999999999999999999999988322    122222 22222343   38999


Q ss_pred             ccccccccceEEEEeeCChhHHHHHHHHHHh-----hhccccCCCchHHHHHHhccccc
Q 017967          305 NLGLYAERIGAMNVVCSSSDLAARVKSQLKR-----LARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       305 ~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~-----~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      .++ +|+|+||+  +++ ++    +++.+..     ......++.+++++.++...|+.
T Consensus       270 ~l~-~G~~~G~v--~~~-~~----~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~  320 (453)
T 2cy8_A          270 ASA-GGLPGGIL--GGR-ED----VMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDT  320 (453)
T ss_dssp             GGG-TTSSCEEE--EEC-HH----HHTTSSSCC---------CCCCHHHHHHHHHHHHH
T ss_pred             hhh-CCcceEEE--ech-HH----HHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHH
Confidence            999 59999999  776 55    4444332     11122346778888877665543

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.81  E-value=7e-19  Score=169.85  Aligned_cols=181  Identities=18%  Similarity=0.184  Sum_probs=135.4

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcC-CCCcchHHH-----
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISS-PTWGNHKNI-----  193 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~-P~y~~~~~~-----  193 (363)
                      +.| +..|..+|++.+|+++...       ..+++.++.+|++|+.++  +..++.|||+|+++. |.|..+...     
T Consensus        54 ~~y-~~~~~~~Le~~lA~l~g~e-------~alv~p~~~sGt~Ai~~a--l~all~~GD~Vl~~~~~~y~~~~~~~~~~g  123 (409)
T 3jzl_A           54 YGY-DDEGRDTLERVYATVFKTE-------AALVRPQIISGTHAISTV--LFGILRPDDELLYITGQPYDTLEEIVGIRK  123 (409)
T ss_dssp             TCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTSCSHHHHHHHH--HHHHCCTTCEEEECSSSCCTTHHHHHTSSS
T ss_pred             CCC-ChhHHHHHHHHHHHHhCCC-------cEEEECCCccHHHHHHHH--HHHhcCCCCEEEEeCCCCcHhHHHHHhccc
Confidence            455 4457889999999996431       223211268999998877  566688999999998 999998854     


Q ss_pred             -----HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcC----CCCCCCCCCCHHHHHHHHHHHHh--cC
Q 017967          194 -----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHNPTGIDPTPEQWEKIADVIQE--KN  262 (363)
Q Consensus       194 -----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~----p~NPTG~~~s~~~~~~i~~~~~~--~~  262 (363)
                           ++..|++++.++.+  +++.+|++.++++++   ++++++++++    |+||||.+   .++++|+++|++  +|
T Consensus       124 ~~~~~l~~~G~~~~~v~~~--~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~nptg~v---~~l~~I~~la~~~~~~  195 (409)
T 3jzl_A          124 QGQGSLKDFHIGYSSVPLL--ENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPSFTI---EKIKEMIVFVKNINPE  195 (409)
T ss_dssp             SSSSCTGGGTCEEEECCCC--TTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCH---HHHHHHHHHHHHHCTT
T ss_pred             chhhHHHHcCCEEEEeCCC--CCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCcCcc---ccHHHHHHHHHhhCCC
Confidence                 45779999999884  357899999999886   3577888888    99999864   788999999999  99


Q ss_pred             CeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHH
Q 017967          263 HIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKS  331 (363)
Q Consensus       263 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~  331 (363)
                      +++++|++|..+.+...   ..      +. ...++++|+||.+|..| .+.||+  ++ +++.++++..
T Consensus       196 ~~livD~a~~~~~~~~~---p~------~~-g~Div~~S~sK~lgg~~~~~GG~v--~~-~~~li~~l~~  252 (409)
T 3jzl_A          196 VIVFVDNCYGEFVEYQE---PP------EV-GADIIAGSLIKNPGGGLAKTGGYI--AG-KEALVDLCGY  252 (409)
T ss_dssp             CEEEEECTTCTTTSSCC---SG------GG-TCSEEEEETTSGGGTTTCSSCEEE--EE-CHHHHHHHHH
T ss_pred             CEEEEeCCcccccccCC---cc------cc-CCeEEEECccccCCccCCceEEEE--Ee-CHHHHHHHHH
Confidence            99999999998774311   11      11 23588999999998655 345888  55 4775444443

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.81  E-value=7.6e-19  Score=169.37  Aligned_cols=193  Identities=18%  Similarity=0.164  Sum_probs=140.2

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-----hCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-----DAR  198 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~G  198 (363)
                      ......+|++.++++...        +++++  +.+|++|++++   +.++.+||+|+++.|+|......+.     ..|
T Consensus        65 ~~p~~~~l~~~la~l~g~--------~~~~~--~~sG~~Ai~~~---~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g  131 (400)
T 3nmy_A           65 HNPTRFAYERCVAALEGG--------TRAFA--FASGMAATSTV---MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAG  131 (400)
T ss_dssp             CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhCC--------CCEEE--ecCHHHHHHHH---HHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcC
Confidence            455678899999998632        34555  67889998764   4567799999999999986655543     459


Q ss_pred             CCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCC
Q 017967          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (363)
Q Consensus       199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~  278 (363)
                      ++++.++..       |++.++++++   ++++++++++|+||||.+++   +++|.++|+++|+++|+||+|....+..
T Consensus       132 ~~~~~v~~~-------d~~~l~~~i~---~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~  198 (400)
T 3nmy_A          132 LDFSFVDLT-------DPAAFKAAIR---ADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR  198 (400)
T ss_dssp             CEEEEECTT-------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC
T ss_pred             eEEEEECCC-------CHHHHHHHhc---cCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence            999988762       7899999886   35778888999999999996   7778888999999999999987433221


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                            +    .+. ...+++.|+||.++.+|.++|++.+++.+++.    .+.+.........+.+++.+.++...++
T Consensus       199 ------~----~~~-g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~----~~~l~~~~~~~g~~~~~~~a~~~l~~l~  262 (400)
T 3nmy_A          199 ------P----LSL-GADLVVHSATKYLNGHSDMVGGIAVVGDNAEL----AEQMAFLQNSIGGVQGPFDSFLALRGLK  262 (400)
T ss_dssp             ------G----GGG-TCSEEEEETTTTTTCSSSCCCEEEEECSCHHH----HHHHHHHHHHHCCBCCHHHHHHHHHHHT
T ss_pred             ------h----hhc-CCcEEEecCccccCCCCCcceeEEEEeCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHhHh
Confidence                  1    111 35588999999999888999871125666774    4444444344445667777766655443

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.81  E-value=1.4e-18  Score=168.97  Aligned_cols=239  Identities=16%  Similarity=0.084  Sum_probs=155.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.....-++  ..+.+.+++.+.+.......| +.....++++.+++++.       ..++|++  ++||++|
T Consensus        57 ~~lD~~~~~~~~~lG~--~~~~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-------~~~~v~~--~~sgseA  124 (434)
T 2epj_A           57 RIVDLVLAYGPLILGH--KHPRVLEAVEEALARGWLYGA-PGEAEVLLAEKILGYVK-------RGGMIRF--VNSGTEA  124 (434)
T ss_dssp             EEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHHC-------TTCEEEE--ESSHHHH
T ss_pred             EEEEcccchhcccCCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCCHHHH
Confidence            6899988864222232  467777777776644322334 33445677777777752       2578888  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh--------------hCCC------CeEEEecccCCCCCCCHHHHHHHH
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFN--------------DARV------PWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~--------------~~G~------~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      ++++..+...+.+++.|++.+|+|.++...+.              ..|+      +++.++.       .|++.+++.+
T Consensus       125 ~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l  197 (434)
T 2epj_A          125 TMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVF  197 (434)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHH
Confidence            99885543334567889999999987543221              1243      3455553       3799999998


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcC
Q 017967          224 KAAPGGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSY  302 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~  302 (363)
                      ++.+++++++++...+||||.++ +.+.+++|.++|+++|+++|+||+|.+|..+.    ..... ......++   .||
T Consensus       198 ~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~----~~~~~-~~~~~~di---~s~  269 (434)
T 2epj_A          198 AEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGL----EGAQG-YFNIEGDI---IVL  269 (434)
T ss_dssp             HHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSST----THHHH-HHTCCCSE---EEE
T ss_pred             HhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCc----chhhH-HhCCCCCe---eee
Confidence            74222344555443456799866 79999999999999999999999999884321    12222 22222333   489


Q ss_pred             ccccccccccceEEEEeeCChhHHHHHHHHHHhhh---ccccCCCchHHHHHHhcccc
Q 017967          303 SKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA---RPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       303 SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ||.++. |+|+||+  +++ ++    +++.+....   ....++.+++++.++...|+
T Consensus       270 sK~l~~-G~~~G~v--~~~-~~----~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~  319 (434)
T 2epj_A          270 GKIIGG-GFPVGAV--AGS-RE----VMSLLTPQGKVFNAGTFNAHPITMAAGLATLK  319 (434)
T ss_dssp             EGGGGT-TSSCEEE--EEC-HH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHH
T ss_pred             cchhcC-Ccceeee--eec-HH----HHHhhccCCCcccCCCCCcCHHHHHHHHHHHH
Confidence            999995 9999999  776 55    444444311   12234677788877765554

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.80  E-value=2.2e-18  Score=168.30  Aligned_cols=249  Identities=12%  Similarity=0.090  Sum_probs=153.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCC-cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI-EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|+..|.....-++  ..+.+.+++.+.+....   +... .+..++++++++.+....+  ..+++|++  |+||++
T Consensus        51 ~~lD~~~~~~~~~lG~--~~~~v~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~ggse  121 (449)
T 3a8u_X           51 KVYDSLSGLWTCGAGH--TRKEIQEAVAKQLSTLD---YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFF--TDSGSE  121 (449)
T ss_dssp             EEEETTHHHHTCTTCB--SCHHHHHHHHHHTTTCS---CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEE--ESSHHH
T ss_pred             EEEECCccHhhccCCC--CCHHHHHHHHHHHHhCC---CccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--cCcHHH
Confidence            5788877763222232  26778888777664311   1111 2233444555555444332  24678988  999999


Q ss_pred             HHHHHHHHHHHhC------CCCEEEEcCCCCcchHH-HHhhCCC------------CeEEEeccc--CCC-CCCC-----
Q 017967          163 SLRLAAALIERYF------PGAKVLISSPTWGNHKN-IFNDARV------------PWSEYRYYD--PKT-VGLD-----  215 (363)
Q Consensus       163 al~l~~~l~~~~~------~gd~Vlv~~P~y~~~~~-~~~~~G~------------~~~~v~~~~--~~~-~~~d-----  215 (363)
                      |++++..++..+.      +||+|++.+|+|.++.. .+...|.            .+..++...  ... .++|     
T Consensus       122 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~  201 (449)
T 3a8u_X          122 CALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGG  201 (449)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHH
Confidence            9999855443221      67999999999987643 4444331            234444311  001 1356     


Q ss_pred             ---HHHHHHHHHcCC-CCcEEEEEcCCC-CCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH
Q 017967          216 ---FEGMIADIKAAP-GGSFILLHGCAH-NPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (363)
Q Consensus       216 ---~~~l~~~l~~~~-~~~~~~~i~~p~-NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  289 (363)
                         ++.|++.+++.. +++++++ ++|+ ||||. ..+.+++++|.++|+++|+++|+||+|.+|...+.   ...+..+
T Consensus       202 ~~~~~~le~~l~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~~~~  277 (449)
T 3a8u_X          202 IALADELLKLIELHDASNIAAVF-VEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS---MFGADSF  277 (449)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEE-EcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc---chhhhhc
Confidence               999999987422 2344444 5654 67997 66799999999999999999999999988864321   1122222


Q ss_pred             HhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhh---------ccccCCCchHHHHHHhcccc
Q 017967          290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLA---------RPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       290 ~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~---------~~~~~~~s~~~q~~~~~~l~  357 (363)
                       ....+++   ||||.++ .| +|+||+  +++ ++    +++.+....         .....+.+.++|.++...|+
T Consensus       278 -~~~~di~---s~sK~l~-~G~~~~G~~--~~~-~~----~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~  343 (449)
T 3a8u_X          278 -GVTPDLM---CIAKQVT-NGAIPMGAV--IAS-TE----IYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALC  343 (449)
T ss_dssp             -TCCCSEE---EECGGGG-TTSSCCEEE--EEE-HH----HHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHH
T ss_pred             -CCCCCEE---EEccccc-CCCCceEEE--EEC-HH----HHHHhhccCcccccccccccCCCcccHHHHHHHHHHHH
Confidence             3233433   8999998 58 999999  665 56    555555431         12234667888877766554

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.80  E-value=1e-18  Score=171.40  Aligned_cols=252  Identities=15%  Similarity=0.116  Sum_probs=157.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+||+..|.+....|+  ..+.+.+++.+.+.... ..|....+..++++++++++....+  ...++|++  |+||++|
T Consensus        52 ~~lD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~gGseA  124 (460)
T 3gju_A           52 KSIDAFAGLYCVNVGY--GRQKIADAIATQAKNLA-YYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYF--GLSGSDA  124 (460)
T ss_dssp             EEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHHS-CCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEE--ESSHHHH
T ss_pred             EEEECCcchhhccCCC--CCHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHhhCC--CCcCEEEE--eCchHHH
Confidence            6899998854323333  24666666655543211 2233333444555555555544322  23578888  9999999


Q ss_pred             HHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhC-------------CCCeEEEecc---cCCCCCCC------
Q 017967          164 LRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDA-------------RVPWSEYRYY---DPKTVGLD------  215 (363)
Q Consensus       164 l~l~~~l~~~~------~~gd~Vlv~~P~y~~~~~~~~~~-------------G~~~~~v~~~---~~~~~~~d------  215 (363)
                      ++.+..++...      .+++.|++.+|+|.++.......             +..+..++..   ..++++.+      
T Consensus       125 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~  204 (460)
T 3gju_A          125 NETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQ  204 (460)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHH
Confidence            99986554332      24689999999998776544322             1134444421   11223344      


Q ss_pred             --HHHHHHHHHcC-CCCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh
Q 017967          216 --FEGMIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (363)
Q Consensus       216 --~~~l~~~l~~~-~~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  291 (363)
                        ++.|++++.+. +++++++++..++|++|. +++.+.+++|.++|++||+++|+||+|.+|...+.   ...... .+
T Consensus       205 ~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~---~~~~~~-~~  280 (460)
T 3gju_A          205 HCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT---MFGSDH-YG  280 (460)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHHH-HT
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchHhh-cC
Confidence              58888888642 234556665556667776 77888899999999999999999999999865421   222222 23


Q ss_pred             cCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHh-------hhccccCCCchHHHHHHhcccc
Q 017967          292 RGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKR-------LARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       292 ~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~-------~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ..+++   .+|||.++ .| +|+||+  +++ ++    +++.+..       ......++.++++|.++...|+
T Consensus       281 ~~pdi---~t~sK~l~-gG~~~lg~v--~~~-~~----i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~  343 (460)
T 3gju_A          281 IKPDL---ITIAKGLT-SAYAPLSGV--IVA-DR----VWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLE  343 (460)
T ss_dssp             CCCSE---EEECGGGT-TTSSCCEEE--EEE-HH----HHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred             CCCCe---eeeehhhc-CCCCCeEEE--EEC-HH----HHHHHhcccccccccccCCCCCCCHHHHHHHHHHHH
Confidence            33333   36899997 56 899999  665 66    4444432       2334455788888988877765

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.80  E-value=1.9e-19  Score=170.22  Aligned_cols=178  Identities=15%  Similarity=0.013  Sum_probs=122.5

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCC--EEEEcCCCCcchHH---HH
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA--KVLISSPTWGNHKN---IF  194 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd--~Vlv~~P~y~~~~~---~~  194 (363)
                      ..|++..+..+|++++++++..       +.. ++  +.+|++++.++  +.....+||  .|+++.++|.....   ..
T Consensus        41 ~~y~~~~~~~~l~~~la~~~~~-------~~~-i~--~~~G~~a~~~a--l~~~~~~gd~~~vi~~~~~~~~~~~~~~~~  108 (357)
T 3lws_A           41 DQYGTGAIIEPFEQKFADVLGM-------DDA-VF--FPSGTMAQQVA--LRIWSDETDNRTVAYHPLCHLEIHEQDGLK  108 (357)
T ss_dssp             EETTEETTHHHHHHHHHHHHTC-------SEE-EE--ESCHHHHHHHH--HHHHHHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred             ccccCChHHHHHHHHHHHHhCC-------CcE-EE--ecCcHHHHHHH--HHHHhhcCCCcEEEecccceeeeeccchhh
Confidence            5687778899999999999743       223 33  57788888776  344456777  67766665443322   34


Q ss_pred             hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHhcCCeEEEecCCCC
Q 017967          195 NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (363)
Q Consensus       195 ~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT-G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~  273 (363)
                      ...|++++.++.   +++.+|++.++++    ++ ++++++++||||| |.+++.+++++|+++|+++|+++|+|++|..
T Consensus       109 ~~~g~~~~~v~~---~~~~~d~~~l~~~----~~-~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~  180 (357)
T 3lws_A          109 ELHPIETILVGA---ADRLMTLDEIKAL----PD-IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLF  180 (357)
T ss_dssp             HHSSCEEEECSC---TTSCCCHHHHHTC----CS-CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred             hccCcEEEEecC---CCCCcCHHHHhcC----cC-cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhh
Confidence            556888888874   3467999999875    23 5678889999998 9999999999999999999999999999862


Q ss_pred             C--cCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHH
Q 017967          274 F--ASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       274 ~--~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      .  .+.+  .   +...+....+  +++.||||.|+.++.  ||+  ++ +++.++++
T Consensus       181 ~~~~~~~--~---~~~~~~~~~d--~~~~s~sK~~~~~~g--g~~--~~-~~~~~~~~  226 (357)
T 3lws_A          181 EMLPYYE--K---TAAEIAGLFD--SIYISFYKGLGGIAG--AIL--AG-PAAFCQTA  226 (357)
T ss_dssp             HHHHHHT--C---CHHHHHTTSS--EEEEESSSTTCCSSC--EEE--EE-CHHHHHHH
T ss_pred             hhhhhcC--C---ChHHHHhcCC--EEEEeccccCCCCce--EEE--Ec-CHHHHHHH
Confidence            1  1111  1   1222222223  337899999943332  888  55 47743333

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.80  E-value=5.3e-19  Score=171.98  Aligned_cols=179  Identities=20%  Similarity=0.196  Sum_probs=131.7

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcC-CCCcchHHHH---------
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISS-PTWGNHKNIF---------  194 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~-P~y~~~~~~~---------  194 (363)
                      ..+..++++.+++++...    ....++++   .+|++|+.++  +..++.|||+|+++. |.|..+...+         
T Consensus        64 ~~~~~~l~~~la~~~g~~----~~~~~i~~---~sGt~Ai~~a--l~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~  134 (431)
T 3ht4_A           64 DIGRDTLEKVYADVFGAE----AGLVRPQI---ISGTHAISTA--LFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGS  134 (431)
T ss_dssp             CHHHHHHHHHHHHHTTCS----EECCBTTS---CSHHHHHHHH--HHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSC
T ss_pred             hhhHHHHHHHHHHHhCCC----ccccccee---eCHHHHHHHH--HHHhCCCCCEEEEeCCCCchhHHHHHhhcccccch
Confidence            345667777777775322    11223323   4789998887  555678999999998 9999988655         


Q ss_pred             -hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHh--cCCeEEEecC
Q 017967          195 -NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG-CAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVA  270 (363)
Q Consensus       195 -~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~-~p~NPTG~~~s~~~~~~i~~~~~~--~~~~ii~De~  270 (363)
                       +..|++++.++.+  .++.+|++.+++++++   ++++++++ +||||||.+++.+++++|+++|++  +|+++|+||+
T Consensus       135 ~~~~G~~~~~v~~~--~~~~~d~e~l~~~l~~---~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea  209 (431)
T 3ht4_A          135 FKEYNIGYNAVPLT--EGGLVDFEAVAAAIHS---NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNC  209 (431)
T ss_dssp             SGGGTCEEEECCBC--TTSSBCHHHHHHHCCT---TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred             HHHcCCEEEEeCCC--CCCCcCHHHHHhhcCC---CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence             4579999999984  3578999999999873   45666666 699999999999999999999999  9999999999


Q ss_pred             CCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc-ccccceEEEEeeCChhHHHHHH
Q 017967          271 YQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       271 y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l-~G~RvG~i~~v~~~~~~~~~~~  330 (363)
                      |..+.+...   ..      .. ...++++||||.+|. .+...||+  +++ ++.++++.
T Consensus       210 ~~~~~~~~~---~~------~~-g~Di~~~S~sK~lgg~~~~~GG~v--~~~-~~li~~l~  257 (431)
T 3ht4_A          210 YGEFIEEQE---PC------HV-GADLMAGSLIKNPGGGIVKTGGYI--VGK-EQYVEACA  257 (431)
T ss_dssp             TCTTSSSCC---GG------GT-TCSEEEEETTSGGGTTTCSSCEEE--EEC-HHHHHHHH
T ss_pred             ChhhccCCC---cc------cc-CCeEEEcCccccCCCCCCCceEEE--Eec-HHHHHHHH
Confidence            999886421   11      11 234889999999763 12344998  664 77444443

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.80  E-value=5.8e-19  Score=166.48  Aligned_cols=192  Identities=10%  Similarity=-0.020  Sum_probs=127.2

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCC-CCcc----hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh
Q 017967          100 PYVLDVVKKAENLMLERGENKEYL-PIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY  174 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~-~~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~  174 (363)
                      ..+++.+.+++.+...... .+|. ...+    ..++++.+++++    +.. ++++|++  |.||++++.++  +..+.
T Consensus        13 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~v~~--~~g~t~al~~~--~~~l~   82 (362)
T 3ffr_A           13 SELYPTVRQHMITALDEKI-GVISHRSKKFEEVYKTASDNLKTLL----ELP-SNYEVLF--LASATEIWERI--IQNCV   82 (362)
T ss_dssp             CCCCTTHHHHHHHHHHTTT-TTSCTTSHHHHHHHHHHHHHHHHHT----TCC-TTEEEEE--ESCHHHHHHHH--HHHHC
T ss_pred             cCCCHHHHHHHHHHhcCCc-cCcCCCCHHHHHHHHHHHHHHHHHh----CCC-CCcEEEE--eCCchHHHHHH--HHhcc
Confidence            3345566655554443322 1111 1223    344555555553    222 3567877  99999999988  44445


Q ss_pred             CCCCEEEEcCCCCcc-hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          175 FPGAKVLISSPTWGN-HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       175 ~~gd~Vlv~~P~y~~-~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      .+ +.+++..+.|.. +...++..|++++.++.+  .++.+|++.++  ++   ++++++++++||||||.+++   +++
T Consensus        83 ~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~--~~---~~~~~v~~~~~~nptG~~~~---l~~  151 (362)
T 3ffr_A           83 EK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAA--FGKGFYPADIT--VP---ADAEIICLTHNETSSGVSMP---VED  151 (362)
T ss_dssp             SS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCGGGCC--CC---TTCCEEEEESEETTTTEECC---HHH
T ss_pred             CC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecC--CCCCCCHHHHh--cc---CCccEEEEEcCCCCcceeCC---HHH
Confidence            56 556666667762 345677889999999983  45789999998  32   45678888999999999998   555


Q ss_pred             HHHHHHhc-CCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeCChhHHHHH
Q 017967          254 IADVIQEK-NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       254 i~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      |.++|+++ |+++|+|++|.......   +         .....+++.|+||.++ .+|+  |++  +.+ ++.++++
T Consensus       152 i~~la~~~p~~~li~D~a~~~~~~~~---~---------~~~~d~~~~s~~K~~~~~~G~--g~~--~~~-~~~~~~~  212 (362)
T 3ffr_A          152 INTFRDKNKDALIFVDAVSSLPYPKF---D---------WTKIDSVFFSVQKCFGLPAGL--GVW--ILN-DRVIEKS  212 (362)
T ss_dssp             HTTSGGGSTTSEEEEECTTTTTSSCC---C---------TTSCSEEEEETTSTTCCCSCC--EEE--EEE-HHHHHHH
T ss_pred             HHHHHHhCCCCEEEEecccccCCccc---C---------hhHCcEEEEecccccCCCCce--EEE--EEC-HHHHHHh
Confidence            77779999 99999999987654321   0         0113478899999998 7784  666  554 5644433

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.80  E-value=2e-18  Score=167.20  Aligned_cols=168  Identities=13%  Similarity=0.089  Sum_probs=127.5

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCC
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARV  199 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~  199 (363)
                      ......++++.+|+++..        +++++  +.||++|+.++  +..++.+||+|+++.|.|.+....+    +..|+
T Consensus        80 ~~p~~~~le~~lA~l~g~--------~~~i~--~ssGt~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~  147 (415)
T 2fq6_A           80 GTLTHFSLQQAMCELEGG--------AGCVL--FPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV  147 (415)
T ss_dssp             CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             CCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            445678899999999633        34555  78999998887  4555679999999999998877654    46799


Q ss_pred             CeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHh--cCCeEEEecCCCCCcCC
Q 017967          200 PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASG  277 (363)
Q Consensus       200 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~--~~~~ii~De~y~~~~~~  277 (363)
                      ++..++.       .|+++++++++   ++++++++++|+||||.+++   +++|+++|++  +|+++|+|++|......
T Consensus       148 ~v~~v~~-------~d~~~le~ai~---~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~  214 (415)
T 2fq6_A          148 TTSWFDP-------LIGADIVKHLQ---PNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF  214 (415)
T ss_dssp             EEEEECT-------TCGGGGGGGCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS
T ss_pred             EEEEECC-------CCHHHHHHhhc---cCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccC
Confidence            9988875       27889988886   35778888999999999996   5677788999  99999999999865432


Q ss_pred             CCCCchhHHHHHHhcCCeEEEEEcCcccccccccc-ceEEEEeeCChhHHHHHH
Q 017967          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAER-IGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~R-vG~i~~v~~~~~~~~~~~  330 (363)
                      .      ++    +. ...+++.|++|.+|.+|.+ +||+  ++. ++.++++.
T Consensus       215 ~------p~----~~-g~Div~~S~sK~lg~~g~~~~G~l--~~~-~~~~~~l~  254 (415)
T 2fq6_A          215 K------AL----DF-GIDVSIQAATKYLVGHSDAMIGTA--VCN-ARCWEQLR  254 (415)
T ss_dssp             C------GG----GG-TCSEEEEETTTTTTCSSSCCCEEE--EEC-TTTHHHHH
T ss_pred             C------cc----cc-CCeEEEEeCccccCCCCCceEEEE--EeC-HHHHHHHH
Confidence            1      11    11 3458899999999988876 5888  555 45444443

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.79  E-value=1.6e-18  Score=168.32  Aligned_cols=238  Identities=15%  Similarity=0.081  Sum_probs=151.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|......|+  ..+.+.+++.+.+.......| +.....+|.+.+++++.       ..+++++  ++||++|
T Consensus        54 ~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-------~~~~v~~--~~sGsea  121 (429)
T 4e77_A           54 AYIDYVGSWGPMILGH--NHPAIRQAVIEAVERGLSFGA-PTEMEVKMAQLVTDLVP-------TMDMVRM--VNSGTEA  121 (429)
T ss_dssp             EEEESSGGGTTCTTCB--TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST-------TCSEEEE--ESSHHHH
T ss_pred             EEEECCCchhccccCC--CCHHHHHHHHHHHHhCcccCC-CCHHHHHHHHHHHhhCC-------CCCEEEE--eCcHHHH
Confidence            7899998875433333  367788887776654332334 55566677777777742       2578988  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCC-------------C------CeEEEecccCCCCCCCHHHHHHHH
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR-------------V------PWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G-------------~------~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      ++++..+...+..++.|++..++|.++...+. ..|             +      .+..++.       .|++.+++.+
T Consensus       122 ~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l  194 (429)
T 4e77_A          122 TMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLASVRQAF  194 (429)
T ss_dssp             HHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-------TCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-------CCHHHHHHHH
Confidence            99986544344466899999999977754211 111             1      1122221       2899999999


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCCCC--HHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          224 KAAPGGSFILLHGCAHNPTGIDPT--PEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~~s--~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      ++.++++ .+++++|+||+|.++.  .+.+++|.++|+++|+++|+||+|.+|..+.    ...... .....++   .|
T Consensus       195 ~~~~~~~-~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~----~~~~~~-~~~~pdi---~t  265 (429)
T 4e77_A          195 EQYPQEV-ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL----AGAQDY-YHVIPDL---TC  265 (429)
T ss_dssp             HHSTTTE-EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT----TCHHHH-TTCCCSE---EE
T ss_pred             HhcCCCE-EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc----chHHHh-cCCCCCe---ee
Confidence            8644434 4445788877764444  4559999999999999999999999883221    112221 2222333   48


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhh---ccccCCCchHHHHHHhcccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA---RPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |||.++ +|+|+||+  +++ ++    +++.+....   ....++.+++++.++...|+
T Consensus       266 ~sK~~~-~G~~~G~~--~~~-~~----~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~  316 (429)
T 4e77_A          266 LGKIIG-GGMPVGAF--GGR-RE----VMNALAPTGPVYQAGTLSGNPIAMAAGFACLT  316 (429)
T ss_dssp             EEGGGG-TTSCCEEE--EEC-HH----HHTTBTTTSSBCC--CCCCCHHHHHHHHHHHH
T ss_pred             eccccc-CCCCeEEE--EEC-HH----HHHHhccCCCccccCCCCCCHHHHHHHHHHHH
Confidence            999999 89999999  664 66    555444321   22334678888887766654

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.79  E-value=2.6e-18  Score=166.56  Aligned_cols=237  Identities=16%  Similarity=0.055  Sum_probs=151.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+|||..|.....-++  ..+.+.+++.+.++......| +..-..++++.+++++    +   .+++|++  ++||++|
T Consensus        53 ~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~----~---~~~~v~~--~~~g~ea  120 (424)
T 2e7u_A           53 RYLDYVMSWGPLILGH--AHPKVLARVRETLERGLTFGA-PSPLEVALAKKVKRAY----P---FVDLVRF--VNSGTEA  120 (424)
T ss_dssp             EEEESSGGGTTCTTCB--TCHHHHHHHHHHHHTCSCCSS-CCHHHHHHHHHHHHHC----T---TCCEEEE--ESSHHHH
T ss_pred             EEEEccccccccccCC--CCHHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHHhC----C---CCCEEEE--eCCHHHH
Confidence            6889988864222232  467777777776644322233 2233455666666552    1   3578888  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-h-------------CCC------CeEEEecccCCCCCCCHHHHHHHH
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFN-D-------------ARV------PWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~-------------~G~------~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      ++++..+...+..++.|++.+|+|.++...+. .             .|+      +++.++.       .|++.|++.+
T Consensus       121 ~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l  193 (424)
T 2e7u_A          121 TMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVL  193 (424)
T ss_dssp             HHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHH
Confidence            99885542234456889999999987654221 1             232      2444443       3799999988


Q ss_pred             HcCCCCcEEEEEcCCCCC-CCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          224 KAAPGGSFILLHGCAHNP-TGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NP-TG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      ++.++++ .+++++|+|| ||.++ +.+.+++|.++ ++||+++|+||+|.+|..+.    .... .......++   .|
T Consensus       194 ~~~~~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~----~~~~-~~~~~~~di---~s  263 (424)
T 2e7u_A          194 KRRGEEI-AAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAF----GGAT-ELLGLKPDL---VT  263 (424)
T ss_dssp             HHHGGGE-EEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSST----THHH-HHHTCCCSE---EE
T ss_pred             HhCCCCE-EEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccch----hHHH-HHhCCCcch---hh
Confidence            7422233 4445677776 89765 79999999999 99999999999999984331    1222 222323343   39


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhh---ccccCCCchHHHHHHhcccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA---RPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |||.++ +|+|+||+  +++ ++    +++.+....   ....++.++++|.++...|+
T Consensus       264 ~sK~l~-~G~~~G~~--~~~-~~----~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~  314 (424)
T 2e7u_A          264 LGKILG-GGLPAAAY--AGR-RE----IMEKVAPLGPVYQAGTLSGNPLAMAAGLATLE  314 (424)
T ss_dssp             ECGGGG-TTSSCEEE--EEC-HH----HHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHH
T ss_pred             hhhhhh-CCcceEEE--EEc-HH----HHhhhcccCCcccCCCCCCCHHHHHHHHHHHH
Confidence            999999 69999999  776 55    455444311   12234677888887766554

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.79  E-value=1.2e-18  Score=165.77  Aligned_cols=188  Identities=16%  Similarity=0.027  Sum_probs=140.4

Q ss_pred             cccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCE
Q 017967          101 YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAK  179 (363)
Q Consensus       101 ~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~  179 (363)
                      .+.+.+.+++.+.+...   .|.+..+..++|+++++++..        +++++  +.||++|++++  +..+ +.+||+
T Consensus        14 ~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~sgt~al~~~--l~~l~~~~gd~   78 (373)
T 3frk_A           14 EIEYEIKFKFEEIYKRN---WFILGDEDKKFEQEFADYCNV--------NYCIG--CGNGLDALHLI--LKGYDIGFGDE   78 (373)
T ss_dssp             HHHHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCE
T ss_pred             CCCHHHHHHHHHHHHCC---CccCCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHcCCCCcCE
Confidence            34567777777666442   367788999999999999743        36766  89999999888  4444 569999


Q ss_pred             EEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Q 017967          180 VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQ  259 (363)
Q Consensus       180 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~  259 (363)
                      |+++.|+|..+...++..|++++.++.+ ++++.+|++.+++++++   ++++++   |+||||...+   +++|.++|+
T Consensus        79 Vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~l~~---~~~~v~---~~n~~G~~~~---l~~i~~l~~  148 (373)
T 3frk_A           79 VIVPSNTFIATALAVSYTGAKPIFVEPD-IRTYNIDPSLIESAITE---KTKAII---AVHLYGQPAD---MDEIKRIAK  148 (373)
T ss_dssp             EEEETTSCTHHHHHHHHHSCEEEEECEE-TTTTEECGGGTGGGCCT---TEEEEE---EECCTTCCCC---HHHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHcCCEEEEEecc-ccccCcCHHHHHHhcCC---CCeEEE---EECCCcCccc---HHHHHHHHH
Confidence            9999999999999999999999999985 34688999999988863   455555   6889999876   456777799


Q ss_pred             hcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCc--cccccccccceEEEEeeCChhH
Q 017967          260 EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVCSSSDL  325 (363)
Q Consensus       260 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S--K~~~l~G~RvG~i~~v~~~~~~  325 (363)
                      ++|+++|+|++|.....-+.  ...      ... ..+++.|||  |.++.+|. .|++  ++.+++.
T Consensus       149 ~~~~~li~D~a~~~g~~~~~--~~~------~~~-~d~~~~S~~~~K~l~~~g~-gg~~--~~~~~~~  204 (373)
T 3frk_A          149 KYNLKLIEDAAQAHGSLYKG--MKV------GSL-GDAAGFSFYPAKNLGSLGD-GGAV--VTNDKDL  204 (373)
T ss_dssp             HHTCEEEEECTTCTTCEETT--EET------TSS-SSEEEEECCTTSSSCCSSS-CEEE--EESCHHH
T ss_pred             HcCCEEEEECCcccCCEECC--Eec------ccc-ccEEEEeCcCCCccCccce-eEEE--EeCCHHH
Confidence            99999999999875432111  000      100 137788877  88873354 7888  7777763

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.79  E-value=3.3e-19  Score=174.58  Aligned_cols=252  Identities=12%  Similarity=0.010  Sum_probs=156.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.+...-|+  -.+.+.+++.+.+...  ..|....+..+.+.++++++....+. ...++|++  |+||++|
T Consensus        62 ~ylD~~~~~~~~~lGh--~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~~--~~sGseA  134 (451)
T 3oks_A           62 RLIDLGSGIAVTTVGN--SAPKVVEAVRSQVGDF--THTCFMVTPYEGYVAVCEQLNRLTPV-RGDKRSAL--FNSGSEA  134 (451)
T ss_dssp             EEEESSHHHHTCTTCT--TCHHHHHHHHHHHTTC--SCCTTTTSCCHHHHHHHHHHHHHSSC-CSSEEEEE--ESSHHHH
T ss_pred             EEEEcCCCccccccCC--CCHHHHHHHHHHHHhc--ccccCCccCCHHHHHHHHHHHHhCCc-CCCCEEEE--eCcHHHH
Confidence            6899998854333333  2567777777666432  23443344445555555555443221 12468888  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCC--------------CCeEEEeccc--------CCCCCC---CHHH
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR--------------VPWSEYRYYD--------PKTVGL---DFEG  218 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G--------------~~~~~v~~~~--------~~~~~~---d~~~  218 (363)
                      ++++..+......+++|++..++|.++.......+              ..+..++...        .+..+.   +++.
T Consensus       135 ~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  214 (451)
T 3oks_A          135 VENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKR  214 (451)
T ss_dssp             HHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHH
Confidence            99985544332345899999999987765443221              1345555420        000111   2444


Q ss_pred             HHHHHHcC-CCCcEEEEEcCCCCCCC--CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCe
Q 017967          219 MIADIKAA-PGGSFILLHGCAHNPTG--IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME  295 (363)
Q Consensus       219 l~~~l~~~-~~~~~~~~i~~p~NPTG--~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~  295 (363)
                      +++.+.+. ....+..++++|.|++|  ...+.+.+++|.++|++||+++|+||+|.+|...+.   ...... .....+
T Consensus       215 ~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~-~~~~pd  290 (451)
T 3oks_A          215 AITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA---MFACEH-EGIDPD  290 (451)
T ss_dssp             HHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCS
T ss_pred             HHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc---chhhhh-cCCCCC
Confidence            55555431 11344555678888776  344677799999999999999999999998865431   111111 122233


Q ss_pred             EEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       296 vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ++   +|||.++ .|+|+||+  +++ ++    +++.+........++.++++|.++...|+
T Consensus       291 i~---t~sK~l~-~G~~iG~v--~~~-~~----~~~~~~~~~~~~t~~~~~~~~aaa~aal~  341 (451)
T 3oks_A          291 LI---VTAKGIA-GGLPLSAV--TGR-AE----IMDSPHVSGLGGTYGGNPIACAAALATIE  341 (451)
T ss_dssp             EE---EECGGGG-TTSSCEEE--EEE-HH----HHTCSCTTSBCCSSSSCHHHHHHHHHHHH
T ss_pred             ee---eehhhhh-CCcceEEE--EEC-HH----HHhhhcCCCcCCCCCCCHHHHHHHHHHHH
Confidence            33   8999998 59999999  665 66    55555544455566888999988877665

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.79  E-value=1.1e-17  Score=162.14  Aligned_cols=182  Identities=17%  Similarity=0.191  Sum_probs=135.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcC-CCCcchHHH-----
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISS-PTWGNHKNI-----  193 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~-P~y~~~~~~-----  193 (363)
                      +.| +..|..+|++.+|+++...       ..++..++.+|++|+.++  +..++.|||+|++++ |.|..+...     
T Consensus        68 y~y-~~~~~~~Le~~lA~l~g~e-------~alv~p~~~sGt~Ai~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g~~~  137 (427)
T 3i16_A           68 YGY-GDIGRDSLDAVYARVFNTE-------SALVRPHFVNGTHALGAA--LFGNLRPGNTMLSVCGEPYDTLHDVIGITE  137 (427)
T ss_dssp             TCT-TCHHHHHHHHHHHHHHTCS-------EEEEETTCCSHHHHHHHH--HHHHCCTTCEEEESSSSCCGGGHHHHTCSC
T ss_pred             CCC-CHHHHHHHHHHHHHHhCCc-------ceEEeCCCccHHHHHHHH--HHHHhCCCCEEEEeCCCccHHHHHHHhccc
Confidence            445 4557899999999996432       223211168899998777  566688999999999 999988744     


Q ss_pred             ------HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcC----CCCCCCCCCCHHHHHHHHHHHHh--c
Q 017967          194 ------FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHNPTGIDPTPEQWEKIADVIQE--K  261 (363)
Q Consensus       194 ------~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~----p~NPTG~~~s~~~~~~i~~~~~~--~  261 (363)
                            ++..|++++.++.+  .++.+|++.+++++++. ++++++++++    |+||||.   ..++++|+++|++  +
T Consensus       138 ~~~~~~l~~~G~~~~~v~~~--~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~---i~dl~~i~~la~~~~~  211 (427)
T 3i16_A          138 NSNMGSLKEFGINYKQVDLK--EDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALL---IEDIKSIVDCVKNIRK  211 (427)
T ss_dssp             CCSSCCTGGGTCEEEECCCC--TTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCC---HHHHHHHHHHHHHHCT
T ss_pred             cchHHHHHHcCCEEEEecCc--cCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCccc---HHHHHHHHHHHHHhCC
Confidence                  45679999999874  35679999999999842 2466777788    8888875   5789999999999  9


Q ss_pred             CCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHH
Q 017967          262 NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       262 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~  330 (363)
                      |+++|+|++|..+.+...   ..      +. ...++++|+||.+|..| .+.||+  +++ ++.++++.
T Consensus       212 g~~livD~a~~~~~~~~~---p~------~~-gaDiv~~S~sK~lgg~g~~~gG~i--~~~-~~li~~l~  268 (427)
T 3i16_A          212 DIICFVDNCYGEFMDTKE---PT------DV-GADLIAGSLIKNIGGGIAPTGGYL--AGT-KDCIEKTS  268 (427)
T ss_dssp             TSEEEEECTTTTTSSSSC---GG------GG-TCSEEEEETTSGGGTTTCCSCEEE--EEC-HHHHHHHH
T ss_pred             CCEEEEECCCccccccCC---cc------cc-CCeEEEecCcccCCCCCCceEEEE--EEC-HHHHHHHH
Confidence            999999999998874311   11      11 23588999999998555 667888  554 77444443

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.78  E-value=1.8e-18  Score=168.47  Aligned_cols=237  Identities=14%  Similarity=0.134  Sum_probs=149.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCC--CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.....-+  +..+.+.+++.+.++....  ..| +.....++++.+++++ +       .++|++  ++||+
T Consensus        66 ~ylD~~~g~~~~~lg--h~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~~--~~sGs  132 (433)
T 1z7d_A           66 RYYDFLSAYSSVNQG--HCHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLL-G-------YDKVLM--MNTGA  132 (433)
T ss_dssp             EEEESSHHHHTTTTC--BTCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHH-T-------CSEEEE--ESSHH
T ss_pred             EEEEcccchhhcccC--CCCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhc-C-------CCeEEE--eCCHH
Confidence            688998876422222  2456777887776643211  123 3344567888888875 2       368888  99999


Q ss_pred             HHHHHHHHHHHHh-------CCC-CEEEEcCCCCcchHH-HHhhCC------------CCeEEEecccCCCCCCCHHHHH
Q 017967          162 GSLRLAAALIERY-------FPG-AKVLISSPTWGNHKN-IFNDAR------------VPWSEYRYYDPKTVGLDFEGMI  220 (363)
Q Consensus       162 ~al~l~~~l~~~~-------~~g-d~Vlv~~P~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~~d~~~l~  220 (363)
                      +|++++..+...+       .+| |+|++.+|+|.++.. .+...|            ..++.+|.       .|++.++
T Consensus       133 eA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le  205 (433)
T 1z7d_A          133 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEALE  205 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHHHH
Confidence            9999986543321       368 999999999987644 233333            23444443       3899999


Q ss_pred             HHHHcCCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEE
Q 017967          221 ADIKAAPGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (363)
Q Consensus       221 ~~l~~~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~  299 (363)
                      ++++.  ++++++++...+|+||.. ++.+.+++|.++|+++|+++|+||+|.+|...+.   ..... ......+++  
T Consensus       206 ~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~---~~~~~-~~~~~~di~--  277 (433)
T 1z7d_A          206 EELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCVH-HYNVKPDVI--  277 (433)
T ss_dssp             HHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGG-GGTCCCSEE--
T ss_pred             HHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc---chhhH-hcCCCCCEE--
Confidence            99852  345555544446778975 7889999999999999999999999988754321   11111 112223433  


Q ss_pred             EcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          300 QSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       300 ~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       ||||.+| +| +|+||+  +++ ++    +++.+........++.+++++.++...|+
T Consensus       278 -t~sK~l~-~G~~~~G~v--~~~-~~----~~~~l~~~~~~~t~~~~~~~~aaa~aal~  327 (433)
T 1z7d_A          278 -LLGKALS-GGHYPISAV--LAN-DD----IMLVIKPGEHGSTYGGNPLAASICVEALN  327 (433)
T ss_dssp             -EECGGGG-TTSSCCEEE--EEC-HH----HHTTCCTTCCCCTTTTCHHHHHHHHHHHH
T ss_pred             -EECcccc-CCCCCeEEE--EEC-HH----HHhhhccccccccCCCCHHHHHHHHHHHH
Confidence             8999999 89 999999  776 55    44444433233445677888877766554

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.78  E-value=9.3e-19  Score=171.07  Aligned_cols=249  Identities=10%  Similarity=-0.015  Sum_probs=149.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .++|+..|.....-|+  ..+.+.+++.+.+...  ..|....+..+.++++++++....+  ...++|++  |+||++|
T Consensus        45 ~ylD~~~~~~~~~lG~--~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~sGseA  116 (448)
T 3dod_A           45 EYYDGFSSVWLNVHGH--RKKELDDAIKKQLGKI--AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFY--SDSGAEA  116 (448)
T ss_dssp             EEEETTHHHHTCSSCB--SCHHHHHHHHHHHTTC--SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEE--ESSHHHH
T ss_pred             EEEECCcchhhccCCC--CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCchHHH
Confidence            6899988764333343  3577888877766432  2233344445556666666544332  22478888  9999999


Q ss_pred             HHHHHHHHHHh--CC----CCEEEEcCCCCcchHHHHhhCCC-------------CeEEEecccCCCCCC----------
Q 017967          164 LRLAAALIERY--FP----GAKVLISSPTWGNHKNIFNDARV-------------PWSEYRYYDPKTVGL----------  214 (363)
Q Consensus       164 l~l~~~l~~~~--~~----gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~----------  214 (363)
                      ++++..+....  .+    +|+|++.+|+|.++.......+.             .+..++.  ++.+..          
T Consensus       117 ~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  194 (448)
T 3dod_A          117 MEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGDPDECRD  194 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccchhhhhH
Confidence            99986554332  04    49999999999877543332221             2333443  122222          


Q ss_pred             -CHHHHHHHHHcCCCCcEEEEEcCCC-CCCC-CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh
Q 017967          215 -DFEGMIADIKAAPGGSFILLHGCAH-NPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (363)
Q Consensus       215 -d~~~l~~~l~~~~~~~~~~~i~~p~-NPTG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  291 (363)
                       |++.|++.++..+++..++++...+ |++| .+++.+.+++|.++|++||+++|+||+|.+|...+.   ...... ..
T Consensus       195 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~---~~a~~~-~~  270 (448)
T 3dod_A          195 QCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFACEH-EN  270 (448)
T ss_dssp             HHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GT
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---hhhhhh-cC
Confidence             4788999887322344555555555 7777 556788899999999999999999999999865431   111111 12


Q ss_pred             cCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHh-------hhccccCCCchHHHHHHhcccc
Q 017967          292 RGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKR-------LARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       292 ~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~-------~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ...+   +.+|||.++ .| +|+||+  +++ ++    +++.+..       ......++.++++|.++...|+
T Consensus       271 ~~~d---i~t~sK~l~-~G~~~ig~v--~~~-~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~  333 (448)
T 3dod_A          271 VQPD---LMAAGKGIT-GGYLPIAVT--FAT-ED----IYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLA  333 (448)
T ss_dssp             CCCS---EEEECGGGG-TTSSCCEEE--EEE-HH----HHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHH
T ss_pred             CCCC---EEEeccccc-CCcCceEEE--EEC-HH----HHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHH
Confidence            2233   336899998 59 599999  665 66    5565544       3333455778888888877665

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.78  E-value=6.9e-18  Score=164.58  Aligned_cols=237  Identities=11%  Similarity=0.142  Sum_probs=157.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCC--CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .++|+..|.....-+  +..+.+.+++.+.++....  ..| +.....++++.+++++ +       .+++++  ++||+
T Consensus        77 ~ylD~~sg~~~~~lg--h~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~~--~~sGs  143 (439)
T 2oat_A           77 KYFDFLSSYSAVNQG--HCHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLF-N-------YHKVLP--MNTGV  143 (439)
T ss_dssp             EEEESSGGGGTTTTC--BTCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHH-T-------CSEEEE--ESSHH
T ss_pred             EEEEccCCcccccCC--CCCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhc-C-------CCEEEE--eCCHH
Confidence            688998886432222  2467788887776643211  113 3345678888888886 2       368877  99999


Q ss_pred             HHHHHHHHHHHHh-------CCC-CEEEEcCCCCcchH-HHHhhCC------------CCeEEEecccCCCCCCCHHHHH
Q 017967          162 GSLRLAAALIERY-------FPG-AKVLISSPTWGNHK-NIFNDAR------------VPWSEYRYYDPKTVGLDFEGMI  220 (363)
Q Consensus       162 ~al~l~~~l~~~~-------~~g-d~Vlv~~P~y~~~~-~~~~~~G------------~~~~~v~~~~~~~~~~d~~~l~  220 (363)
                      +|++++..++..+       .+| |.|++.+|+|.++. ..+...|            ..++.+|.       .|++.++
T Consensus       144 eA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le  216 (439)
T 2oat_A          144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALE  216 (439)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHHH
Confidence            9999885544321       367 89999999997764 3444444            35566654       2899999


Q ss_pred             HHHHcCCCCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEE
Q 017967          221 ADIKAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (363)
Q Consensus       221 ~~l~~~~~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~  299 (363)
                      +.++.  ++++++++...+|+||. .++.+++++|.++|++||+++|+||+|.+|...+.   ..... ......+++  
T Consensus       217 ~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~---~~~~~-~~~~~~Di~--  288 (439)
T 2oat_A          217 RALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVD-YENVRPDIV--  288 (439)
T ss_dssp             HHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGG-GGTCCCSEE--
T ss_pred             HHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc---chhHH-HhCCCCcEE--
Confidence            98852  34555554444567896 57999999999999999999999999988764321   11111 112223433  


Q ss_pred             EcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          300 QSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       300 ~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       ||||.++ +| +|+||+  +++ ++    +++.+........++.+++++.++...|+
T Consensus       289 -t~sK~l~-~G~~~~G~v--~~~-~~----~~~~l~~~~~~~t~~~~~~~~aaa~aal~  338 (439)
T 2oat_A          289 -LLGKALS-GGLYPVSAV--LCD-DD----IMLTIKPGEHGSTYGGNPLGCRVAIAALE  338 (439)
T ss_dssp             -EECGGGG-TTSSCCEEE--EEC-HH----HHTTSCTTSSCCSSTTCHHHHHHHHHHHH
T ss_pred             -Eeccccc-CCCCCeEEE--EEC-HH----HHhccCCCCcccCCCcCHHHHHHHHHHHH
Confidence             9999999 69 999999  776 55    44444433233445677888887765554

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.78  E-value=2e-18  Score=169.34  Aligned_cols=249  Identities=14%  Similarity=0.095  Sum_probs=158.0

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CC-CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-EN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      .+||+..|.....-|.  -.+.+.+++.+.+... .. ..+.+.....+|++.+++++.      ...++|++  ++||+
T Consensus        76 ~ylD~~s~~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~------~~~~~v~~--~~sGs  145 (457)
T 3tfu_A           76 EVLDAMSSWWTAIHGH--GHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITP------AGLDTVFF--SDSGS  145 (457)
T ss_dssp             EEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSS------TTEEEEEE--ESSHH
T ss_pred             EEEECCCcHhhhccCC--CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCC------CCcCEEEE--eCcHH
Confidence            5788887743222332  3566777766555331 10 122234455677777777741      12468888  99999


Q ss_pred             HHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHHHHhhC--------------CCCeEEEecccCCCCCCCHHHHHH
Q 017967          162 GSLRLAAALIERY-----FPG-AKVLISSPTWGNHKNIFNDA--------------RVPWSEYRYYDPKTVGLDFEGMIA  221 (363)
Q Consensus       162 ~al~l~~~l~~~~-----~~g-d~Vlv~~P~y~~~~~~~~~~--------------G~~~~~v~~~~~~~~~~d~~~l~~  221 (363)
                      +|++++..+....     .+| +.|++.+++|.++.......              ...+..++.........|++.|++
T Consensus       146 eA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~  225 (457)
T 3tfu_A          146 VSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEA  225 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHH
Confidence            9999985544332     145 58999999997765443333              113333443111112247899999


Q ss_pred             HHHcCCCCcEEEEEcC-CCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEE
Q 017967          222 DIKAAPGGSFILLHGC-AHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~-p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~  299 (363)
                      ++++.++++.++++.+ ++||+|..+ +.+.+++|.++|+++|+++|+||+|.+|...+.   ...... ....++++  
T Consensus       226 ~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~---~~a~~~-~~~~pdii--  299 (457)
T 3tfu_A          226 QLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA---LFAADH-AGVSPDIM--  299 (457)
T ss_dssp             HHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHH-HTCCCSEE--
T ss_pred             HHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc---hhHhHh-cCCCceEE--
Confidence            9875334566777677 799999877 778899999999999999999999999865431   122222 23334444  


Q ss_pred             EcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhh-----hccccCCCchHHHHHHhcccc
Q 017967          300 QSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRL-----ARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       300 ~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~-----~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       +|||.++ .| +|+||+  +++ ++    +++.+...     .....++.+++++.++...|+
T Consensus       300 -t~sK~l~-gG~~~lG~v--~~~-~~----i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~  354 (457)
T 3tfu_A          300 -CVGKALT-GGYLSLAAT--LCT-AD----VAHTISAGAAGALMHGPTFMANPLACAVSVASVE  354 (457)
T ss_dssp             -EECGGGG-TTSSCCEEE--EEE-HH----HHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHH
T ss_pred             -EEChhhh-CCCcceEEE--EEc-HH----HHHHhhccCCCceeEecCCCcCHHHHHHHHHHHH
Confidence             8999887 46 799999  665 66    55555311     222345778888887766665

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.78  E-value=2.4e-18  Score=165.81  Aligned_cols=210  Identities=15%  Similarity=0.150  Sum_probs=127.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCC------CCCcchHHHHH----HHHHHHhcCCCCcccCCcEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEY------LPIEGLAAFNK----VTAELLFGADNSVLKEQRVA  153 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y------~~~~G~~~lr~----aia~~l~~~~~~~~~~~~i~  153 (363)
                      +.|+|..+++       +.++.+.+++.+.+.......|      .......++++    .+++++..      ++++|+
T Consensus        26 ~~i~l~~~~~-------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~i~   92 (417)
T 3n0l_A           26 EGLEMIASEN-------FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC------KFANVQ   92 (417)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC------SEEECC
T ss_pred             cCeeeecccC-------CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC------CCcceE
Confidence            5678865442       2367788887665522211222      22233344544    55555422      245665


Q ss_pred             EEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCC--eEEEecccCCCCCCCHHHHHHHHHcCCC
Q 017967          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVP--WSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (363)
Q Consensus       154 ~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~--~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (363)
                      +  +.| +++++++  +..++.+||+|+++.|+|..+..   .+...|..  ++.++.  ++++.+|++.|++.+++.  
T Consensus        93 ~--~sG-t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~~~l~~~i~~~--  163 (417)
T 3n0l_A           93 P--NSG-SQANQGV--YAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGV--ELDGRIDYEKVREIAKKE--  163 (417)
T ss_dssp             C--SSH-HHHHHHH--HHHHSCTTCEEEEECC----------------CCSEEEEECC--CTTSSCCHHHHHHHHHHH--
T ss_pred             e--ccH-HHHHHHH--HHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccC--CCCCCcCHHHHHHHHHhc--
Confidence            5  666 8998888  44457899999999999987655   33444444  455555  356779999999999731  


Q ss_pred             CcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCC-CCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       229 ~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                      +++++++++|+|  |..++   +++|.++|+++|+++|+||++ .++.+.+...  ..+    .  ...+++.||||.+ 
T Consensus       164 ~~~~v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~--~~~----~--~~di~~~s~sK~l-  229 (417)
T 3n0l_A          164 KPKLIVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHP--SPF----P--YAHVVSSTTHKTL-  229 (417)
T ss_dssp             CCSEEEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC--CCT----T--TCSEEEEESSTTT-
T ss_pred             CCeEEEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCC--Ccc----c--cceEEEeeCcccc-
Confidence            344666677776  77777   677888899999999999995 3333221100  000    1  2358899999988 


Q ss_pred             cccccceEEEEeeCChhHHHHHHHHHHhh
Q 017967          308 LYAERIGAMNVVCSSSDLAARVKSQLKRL  336 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~~~~~~~~~l~~~  336 (363)
                       +|+|.||+  ++++++    +.+.+...
T Consensus       230 -~g~~~G~~--~~~~~~----~~~~~~~~  251 (417)
T 3n0l_A          230 -RGPRGGII--MTNDEE----LAKKINSA  251 (417)
T ss_dssp             -CSCSCEEE--EESCHH----HHHHHHHH
T ss_pred             -CCCCeeEE--EECCHH----HHHHHhhh
Confidence             69999999  887667    44545444

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.4e-18  Score=171.96  Aligned_cols=190  Identities=13%  Similarity=0.072  Sum_probs=143.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh---CCC---CEEEEcCCCCcchHHH
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY---FPG---AKVLISSPTWGNHKNI  193 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~---~~g---d~Vlv~~P~y~~~~~~  193 (363)
                      .+|....|..++++.+++++....+...+++++++  +.||++|+.++...+...   .+|   |.|+++.|+|..+...
T Consensus        97 ~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~--~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~  174 (497)
T 3mc6_A           97 LHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTT--TSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKA  174 (497)
T ss_dssp             TCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEE--ESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHH
T ss_pred             CCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEE--cCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHH
Confidence            45666778889999988888776666555778877  999999999885433221   145   8999999999999999


Q ss_pred             HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC
Q 017967          194 FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG  273 (363)
Q Consensus       194 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~  273 (363)
                      ++..|++++.+++++ +++.+|++.|+++++   ++++++++++|+||||.+.+   +++|.++|+++|+++|+|++|.+
T Consensus       175 ~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~livD~a~~~  247 (497)
T 3mc6_A          175 AYYFGMKLRHVELDP-TTYQVDLGKVKKFIN---KNTVLLVGSAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSCLGS  247 (497)
T ss_dssp             HHHSCCEEEEECBCT-TTCSBCTTTTGGGCC---SSEEEEEEETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETTTTH
T ss_pred             HHHcCCeEEEEecCc-ccCcCCHHHHHHHHh---hCCEEEEEECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECcchh
Confidence            999999999999853 368899999999886   35788899999999999977   55677789999999999999985


Q ss_pred             CcCC-----CCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          274 FASG-----SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       274 ~~~~-----~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      +...     +. ...+.+.  .....-.+++.|++|.++ .|.++||+  ++.++.
T Consensus       248 ~~~~f~~~~~~-~~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~--~~~~~~  297 (497)
T 3mc6_A          248 FIVSFMEKAGY-KNLPLLD--FRVPGVTSISCDTHKYGF-APKGSSVI--MYRNSD  297 (497)
T ss_dssp             HHHGGGTTTTC-CSCCCCS--TTSTTCCEEEEETTTTTC-CCSSCEEE--ECSSHH
T ss_pred             hhhhhhhhhcc-cCCcccc--ccCCCCcEEEECchhhcC-CCCCceeE--EecCHH
Confidence            4211     00 0000000  011123577889999764 78999999  777554

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.78  E-value=3.3e-19  Score=168.51  Aligned_cols=196  Identities=17%  Similarity=0.046  Sum_probs=130.4

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCE--
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK--  179 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~--  179 (363)
                      +.+.+.+++.+...   ...|++..+..+|++++++++..        +..++  +.||++++.++  +...+.+||.  
T Consensus        27 ~~p~v~~ai~~~~~---~~~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~~g~~a~~~a--~~~~~~~g~~~v   91 (359)
T 3pj0_A           27 VLTEALQNIDDNLE---SDIYGNGAVIEDFETKIAKILGK--------QSAVF--FPSGTMAQQIA--LRIWADRKENRR   91 (359)
T ss_dssp             HHHHHTTTSCTTCB---CCBTTBSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHHHHHHTCCE
T ss_pred             CCHHHHHHHHhhcc---cCcccCCHHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHHHhcCCCcE
Confidence            45666666544222   25687888999999999999643        22234  57888898877  3444557776  


Q ss_pred             EEEcCCCCcchH---HHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC-CCCCCHHHHHHHH
Q 017967          180 VLISSPTWGNHK---NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT-GIDPTPEQWEKIA  255 (363)
Q Consensus       180 Vlv~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT-G~~~s~~~~~~i~  255 (363)
                      |+++.++|....   ......|++++.++.   +++.+|++.++++ .   ++++++++++||||| |.+++.+++++|+
T Consensus        92 vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~  164 (359)
T 3pj0_A           92 VAYHPLSHLEIHEQDGLKELQQITPLLLGT---ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKIS  164 (359)
T ss_dssp             EEECTTCHHHHSSTTHHHHHHCCEEEECSC---TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHH
T ss_pred             EEEeccceeeehhcchHHHhcCceEEecCC---cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHH
Confidence            555545443221   122456899988876   3578999999887 3   356688889999998 7999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHH
Q 017967          256 DVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARV  329 (363)
Q Consensus       256 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~  329 (363)
                      ++|+++|+++|+|++|..+.....   ..+...+. ...+ +++.||||.++.++ . ||+   +.+++.++++
T Consensus       165 ~~~~~~~~~li~D~a~~~~~~~~~---~~~~~~~~-~~~d-~~~~s~sK~~~~~~-g-g~~---~~~~~l~~~~  228 (359)
T 3pj0_A          165 EYCHEQGISLHLDGARLWEITPFY---QKSAEEIC-ALFD-SVYVSFYKGIGGIA-G-AIL---AGNDDFVQEA  228 (359)
T ss_dssp             HHHHHHTCEEEEEETTCGGGHHHH---TCCHHHHH-TTCS-EEEEESSSTTCCSS-C-EEE---EECHHHHHHH
T ss_pred             HHHHHcCCEEEEECcchhcchhhh---CCCHHHhh-ccCC-EEEEeccccCCCcc-e-EEE---ECCHHHHHHH
Confidence            999999999999999865431100   00122222 2223 34568999987552 2 666   4457743333

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.78  E-value=5.4e-18  Score=160.84  Aligned_cols=186  Identities=13%  Similarity=0.007  Sum_probs=139.0

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH---hCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER---YFP  176 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~---~~~  176 (363)
                      +.+++.+.+++.+.+...   .|.+..+..++++++++++..        +++++  |+||++|+.++  +..+   +.+
T Consensus         9 ~~~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~~~~~~~~   73 (375)
T 2fnu_A            9 PCLDKEDKKAVLEVLNSK---QLTQGKRSLLFEEALCEFLGV--------KHALV--FNSATSALLTL--YRNFSEFSAD   73 (375)
T ss_dssp             CCCCHHHHHHHHHHHTSS---CCSSSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHSSCCCTT
T ss_pred             CCCCHHHHHHHHHHHHcC---cccCChHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHhcccCCC
Confidence            446778888887776432   244567789999999999732        27777  99999999988  4444   569


Q ss_pred             CCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHH
Q 017967          177 GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (363)
Q Consensus       177 gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~  256 (363)
                      ||+|+++.|+|..+...++..|++++.+++++  ++.+|++.+++.+++   ++++++++++   ||...+   +++|.+
T Consensus        74 gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~---~~~~v~~~~~---tG~~~~---l~~i~~  142 (375)
T 2fnu_A           74 RNEIITTPISFVATANMLLESGYTPVFAGIKN--DGNIDELALEKLINE---RTKAIVSVDY---AGKSVE---VESVQK  142 (375)
T ss_dssp             SCEEEECSSSCTHHHHHHHHTTCEEEECCBCT--TSSBCGGGSGGGCCT---TEEEEEEECG---GGCCCC---HHHHHH
T ss_pred             CCEEEECCCccHhHHHHHHHCCCEEEEeccCC--CCCCCHHHHHhhcCc---CceEEEEeCC---cCCccC---HHHHHH
Confidence            99999999999999999999999999999843  347899999988762   4566665554   999987   567777


Q ss_pred             HHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCc--cccccccccceEEEEee-CChhH
Q 017967          257 VIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS--KNLGLYAERIGAMNVVC-SSSDL  325 (363)
Q Consensus       257 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S--K~~~l~G~RvG~i~~v~-~~~~~  325 (363)
                      +|+++|+++|+|++|.......    ...    ..... .+++.|||  |.++. |  +|++  ++ ++++.
T Consensus       143 l~~~~~~~li~D~a~~~~~~~~----~~~----~~~~~-~i~~~s~s~~K~~~~-g--~g~~--~~~~~~~~  200 (375)
T 2fnu_A          143 LCKKHSLSFLSDSSHALGSEYQ----NKK----VGGFA-LASVFSFHAIKPITT-A--EGGA--VVTNDSEL  200 (375)
T ss_dssp             HHHHHTCEEEEECTTCTTCEET----TEE----TTSSS-SEEEEECCTTSSSCC-S--SCEE--EEESCHHH
T ss_pred             HHHHcCCEEEEECccccCCeEC----Cee----ccccC-CeEEEeCCCCCCccc-c--CceE--EEeCCHHH
Confidence            8999999999999987654321    000    11111 47788888  99985 6  7888  55 45663

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.78  E-value=5.6e-18  Score=166.94  Aligned_cols=251  Identities=10%  Similarity=0.042  Sum_probs=163.7

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+||+..|.....-|+  ..+.+.+++.+.++... + +....+..+.++++++++....+.  ..++|++  ++||++|
T Consensus        55 ~ylD~~s~~~~~~lGh--~~p~v~~A~~~~l~~~~-~-~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~--~~sGseA  126 (476)
T 3i5t_A           55 RLIDGPAGMWCAQVGY--GRREIVDAMAHQAMVLP-Y-ASPWYMATSPAARLAEKIATLTPG--DLNRIFF--TTGGSTA  126 (476)
T ss_dssp             EEEETTHHHHTCTTCB--CCHHHHHHHHHHHHHCC-C-CCTTTCBCHHHHHHHHHHHTTSST--TCCEEEE--ESSHHHH
T ss_pred             EEEECCCchhhccCCC--CCHHHHHHHHHHHHhcc-C-cccCccCCHHHHHHHHHHHhcCCC--CcCEEEE--eCchHHH
Confidence            6899988854333333  35677777766554311 2 212245667888888888766532  3468888  9999999


Q ss_pred             HHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCCC-------------eEEEe--cccCCCCCCC-------
Q 017967          164 LRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARVP-------------WSEYR--YYDPKTVGLD-------  215 (363)
Q Consensus       164 l~l~~~l~~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~~-------------~~~v~--~~~~~~~~~d-------  215 (363)
                      ++.+..+....      ..++.|++..|+|.++.......+..             +..++  ..... ++.+       
T Consensus       127 ~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~  205 (476)
T 3i5t_A          127 VDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDD  205 (476)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHHHHH
Confidence            99986655433      34579999999998886554432221             22222  21010 1222       


Q ss_pred             -HHHHHHHHHcC-CCCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc
Q 017967          216 -FEGMIADIKAA-PGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (363)
Q Consensus       216 -~~~l~~~l~~~-~~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  292 (363)
                       ++.|++.+... +++..++++.+++|++|. +++.+.+++|.++|+++|+++|+||+|.+|...+.   ..........
T Consensus       206 ~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~---~~~~~~~~~v  282 (476)
T 3i5t_A          206 LVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE---WFASEKVFGV  282 (476)
T ss_dssp             HHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHHHTTCC
T ss_pred             HHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC---ceeeecccCC
Confidence             78888888642 234567777777888885 88999999999999999999999999999865431   2222212222


Q ss_pred             CCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhh-------hccccCCCchHHHHHHhcccc
Q 017967          293 GMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRL-------ARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       293 ~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~-------~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      .++++   +|||.++ .| +|+|++  +++ ++    +++.+...       .....++.+++++.++...|+
T Consensus       283 ~pdi~---t~sK~l~-~G~~plg~v--~~~-~~----i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~  344 (476)
T 3i5t_A          283 VPDII---TFAKGVT-SGYVPLGGL--AIS-EA----VLARISGENAKGSWFTNGYTYSNQPVACAAALANIE  344 (476)
T ss_dssp             CCSEE---EECGGGG-TTSSCCEEE--EEC-HH----HHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHH
T ss_pred             Ccchh---hhhhhhc-CCCcCeEEE--EEC-HH----HHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHH
Confidence            23443   6899998 59 999999  665 66    55555432       222445778888888877665

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.78  E-value=6.7e-18  Score=164.15  Aligned_cols=159  Identities=12%  Similarity=0.016  Sum_probs=124.4

Q ss_pred             CCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH----HHhhCC
Q 017967          123 LPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN----IFNDAR  198 (363)
Q Consensus       123 ~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~----~~~~~G  198 (363)
                      .+.....+|++.+|+++..        +..++  +.+|++|+.++  +..++.+||+|++++|+|..+..    .++..|
T Consensus        79 ~~~p~~~~le~~lA~l~g~--------~~~v~--~~sG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G  146 (430)
T 3ri6_A           79 SSNPTVEDLEQRLKNLTGA--------LGVLA--LGSGMAAISTA--ILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFG  146 (430)
T ss_dssp             -CCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcC
Confidence            3466788999999998643        23444  57788998877  45557899999999999998887    667899


Q ss_pred             CCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCC
Q 017967          199 VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGS  278 (363)
Q Consensus       199 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~  278 (363)
                      ++++.++.+       |++.++++++   ++++++++++|+||||.+++   +++|.++|+++|+++|+|++|.......
T Consensus       147 ~~~~~v~~~-------d~~~l~~ai~---~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~  213 (430)
T 3ri6_A          147 IEVRFVDVM-------DSLAVEHACD---ETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE  213 (430)
T ss_dssp             CEEEEECTT-------CHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC
T ss_pred             CEEEEeCCC-------CHHHHHHhhC---CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence            999999862       8899999886   35778889999999999987   5567778999999999999998654321


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                            +    ... ...+++.|+||.++.+|..+|.++
T Consensus       214 ------~----~~~-g~div~~S~sK~l~g~g~~~gG~v  241 (430)
T 3ri6_A          214 ------A----KRL-GVDIEVLSSTKFISGGGTSVGGVL  241 (430)
T ss_dssp             ------G----GGG-TCSEEEEECCCEEETTEEECCEEE
T ss_pred             ------h----HHc-CCEEEEECCcccccCCCCceEEEE
Confidence                  1    111 235889999999987777777773

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.77  E-value=1.6e-17  Score=160.95  Aligned_cols=181  Identities=16%  Similarity=0.174  Sum_probs=133.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcC-CCCcchHHH-----
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISS-PTWGNHKNI-----  193 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~-P~y~~~~~~-----  193 (363)
                      +.|+ ..|..+|++.+|+++...       ..++..++.+|++|+.++  +..++.|||+|++++ |.|..+...     
T Consensus        69 y~Y~-~~g~~~Le~~lA~l~g~e-------~alv~p~~~sGt~A~~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g~~~  138 (427)
T 3hvy_A           69 YGYN-DIGRDSLDRVYANIFNTE-------SAFVRPHFVNGTHAIGAA--LFGNLRPNDTMMSICGMPYDTLHDIIGMDD  138 (427)
T ss_dssp             TCTT-CHHHHHHHHHHHHHHTCS-------EEEEETTCCSHHHHHHHH--HHHTCCTTCEEEECSSSCCGGGHHHHTCCT
T ss_pred             CCCC-chhHHHHHHHHHHHhCCC-------ceEEeCCCCcHHHHHHHH--HHHhcCCCCEEEEeCCCCchhHHHHhcccc
Confidence            4453 457899999999996432       223211168899998777  566688999999999 999988743     


Q ss_pred             ------HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcC----CCCCCCCCCCHHHHHHHHHHHHh--c
Q 017967          194 ------FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC----AHNPTGIDPTPEQWEKIADVIQE--K  261 (363)
Q Consensus       194 ------~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~----p~NPTG~~~s~~~~~~i~~~~~~--~  261 (363)
                            ++..|++++.++.   +++.+|++.+++++++. ++++++++++    |+||||.   ..++++|+++|++  +
T Consensus       139 ~~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~nptg~---v~dl~~i~~ia~~~~~  211 (427)
T 3hvy_A          139 SKKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWRKSLR---IAEIAEIIKSIREVNE  211 (427)
T ss_dssp             TCCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSSCCCC---HHHHHHHHHHHHHHCS
T ss_pred             chhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCCcccc---HHHHHHHHHHHHHhCC
Confidence                  4567999999987   35789999999999842 2466777788    8888875   5789999999999  8


Q ss_pred             CCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHH
Q 017967          262 NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       262 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~  330 (363)
                      |+++|+|++|..+.+...   ..      +. ...++++|+||.+|..| .+.||+  ++ +++.++++.
T Consensus       212 g~~livD~a~~~~~~~~~---p~------~~-gaDiv~~S~sK~lgg~g~~~GG~i--~~-~~~li~~l~  268 (427)
T 3hvy_A          212 NVIVFVDNCYGEFVEEKE---PT------DV-GADIIAGSLIKNIGGGIATTGGYI--AG-KEEYVTQAT  268 (427)
T ss_dssp             SSEEEEECTTCTTTSSSC---GG------GG-TCSEEEEETTSGGGTTTCCSCEEE--EE-CHHHHHHHH
T ss_pred             CCEEEEECCccccccCCC---Cc------cc-CCeEEEECCcccccccccceEEEE--EE-CHHHHHHHH
Confidence            999999999988874311   11      11 23588999999998544 456887  55 477444443

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.77  E-value=4.1e-18  Score=164.21  Aligned_cols=197  Identities=10%  Similarity=-0.018  Sum_probs=132.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCC--------CCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--------PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--------~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+.|..+.+      ...++.+.+++.+.+.... ..+.        ......++++++++++..      ++++|++ 
T Consensus        28 ~~~yld~~~~------~~~~~~v~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~-   93 (416)
T 1qz9_A           28 GVIYLDGNSL------GARPVAALARAQAVIAEEW-GNGLIRSWNSAGWRDLSERLGNRLATLIGA------RDGEVVV-   93 (416)
T ss_dssp             TCEECCTTTS------CCCBTTHHHHHHHHHHTCC-CCCGGGHHHHTSGGGHHHHHHHHHHTTTTC------CTTSEEE-
T ss_pred             CeEeecCCCc------CCCcHHHHHHHHHHHHHHH-hccCccccchhhHHHHHHHHHHHHHHHcCC------CcccEEE-
Confidence            6778876653      2345566777666654321 1110        023456778888777522      3578988 


Q ss_pred             eccchhHHHHHHHHHHHHh----CCCCE-EEEcCCCCcchHHHH----hhC--CCCeEEEecccCCCCCCCHHHHHHHHH
Q 017967          156 QGLSGTGSLRLAAALIERY----FPGAK-VLISSPTWGNHKNIF----NDA--RVPWSEYRYYDPKTVGLDFEGMIADIK  224 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~----~~gd~-Vlv~~P~y~~~~~~~----~~~--G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (363)
                       |.|++++++++...+..+    .+||+ |++..++|+.+...+    +..  |++++.++.         ++.+++.++
T Consensus        94 -~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~  163 (416)
T 1qz9_A           94 -TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAID  163 (416)
T ss_dssp             -CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCS
T ss_pred             -eCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhC
Confidence             999999988764332223    78987 555556887654433    233  888888864         678888876


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcc
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  304 (363)
                         ++++++++++|+||||.+++   +++|.++|+++|+++|+|++|......   .   .+..+    ...+++.|++|
T Consensus       164 ---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~---~---~~~~~----~~d~~~~s~~K  227 (416)
T 1qz9_A          164 ---QDTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAVP---V---DLHQA----GADYAIGCTYK  227 (416)
T ss_dssp             ---TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC---C---CHHHH----TCSEEEECSSS
T ss_pred             ---CCceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccccCcC---C---Chhhc----CCCEEEecCcc
Confidence               35778899999999999998   577788899999999999998732111   1   12221    24478899999


Q ss_pred             ccccccccc-eEEEEeeCChh
Q 017967          305 NLGLYAERI-GAMNVVCSSSD  324 (363)
Q Consensus       305 ~~~l~G~Rv-G~i~~v~~~~~  324 (363)
                      .++ +|.|+ ||+  +++ ++
T Consensus       228 ~l~-~g~~~~g~l--~~~-~~  244 (416)
T 1qz9_A          228 YLN-GGPGSQAFV--WVS-PQ  244 (416)
T ss_dssp             TTC-CCTTCCCEE--EEC-TT
T ss_pred             cCC-CCCCCeEEE--EEC-HH
Confidence            985 78888 999  665 44

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.77  E-value=9.5e-18  Score=164.36  Aligned_cols=214  Identities=11%  Similarity=0.074  Sum_probs=139.1

Q ss_pred             CcEEeecccc-CCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           84 KKLNLGVGAY-RTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        84 ~~i~l~~g~~-~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      +.++|..|.. .|......+ +.+.+++.+.+..+. ..|.+..+..+|++++++++..        +++++  |+||++
T Consensus        33 ~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~~~~-~~y~~~~~~~~l~~~la~~~~~--------~~v~~--t~~gt~  100 (467)
T 2oqx_A           33 NPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMMRGD-EAYSGSRSYYALAESVKNIFGY--------QYTIP--THQGRG  100 (467)
T ss_dssp             CGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTTSCC-CCSSSCHHHHHHHHHHHHHHCC--------SEEEE--EC--CC
T ss_pred             CceeccCCCeeEecccCCCc-HHHHHHHHHHhccCc-ceeccCchhHHHHHHHHHHhCc--------CcEEE--cCCcHH
Confidence            5566666642 121111112 455555555543333 4688888999999999999732        57877  999999


Q ss_pred             HHHHHHHHHHHhCC-----C----CEEEEcCCCCcchHHHHhhCCCCeEEEecc----cC----CCCCCCHHHHHHHHHc
Q 017967          163 SLRLAAALIERYFP-----G----AKVLISSPTWGNHKNIFNDARVPWSEYRYY----DP----KTVGLDFEGMIADIKA  225 (363)
Q Consensus       163 al~l~~~l~~~~~~-----g----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~----~~----~~~~~d~~~l~~~l~~  225 (363)
                      |++++...  ...+     |    |.|++..+.|..+.......|..++.....    ..    .++.+|++.|++++++
T Consensus       101 A~~~al~~--~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~  178 (467)
T 2oqx_A          101 AEQIYIPV--LIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEE  178 (467)
T ss_dssp             SHHHHHHH--HHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHH
T ss_pred             HHHHHHHH--HhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHh
Confidence            99888433  3456     8    888887655565666666666665543210    01    2356899999999974


Q ss_pred             CC-CCcEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHhcCCeEEEecCCCC----------CcCCCCCCchhHHHHHH---
Q 017967          226 AP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDVAYQG----------FASGSLDNDASSVRLFA---  290 (363)
Q Consensus       226 ~~-~~~~~~~i~~p~NPT-G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~----------~~~~~~~~~~~~~~~~~---  290 (363)
                      .. ++++++++++||||| |.+++.+++++|.++|++||+++|+|++...          ..+.+.     +...+.   
T Consensus       179 ~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~-----~~~~~~~~~  253 (467)
T 2oqx_A          179 VGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW-----TIEQITRET  253 (467)
T ss_dssp             HCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS-----CHHHHHHHH
T ss_pred             cCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc-----cHHHHhhhh
Confidence            21 246678889999998 9999999999999999999999999954211          122211     122221   


Q ss_pred             -hcCCeEEEEEcCccccccc-cccceEEEEeeCCh
Q 017967          291 -TRGMELLVAQSYSKNLGLY-AERIGAMNVVCSSS  323 (363)
Q Consensus       291 -~~~~~vi~~~S~SK~~~l~-G~RvG~i~~v~~~~  323 (363)
                       ... + +++.|+||.+|++ |   ||+  +++++
T Consensus       254 ~~~~-d-~~~~s~sK~~g~~~G---g~~--~~~~~  281 (467)
T 2oqx_A          254 YKYA-D-MLAMSAKKDAMVPMG---GLL--CMKDD  281 (467)
T ss_dssp             GGGC-S-EEEEESSSTTCCSSC---EEE--EECSG
T ss_pred             hccC-C-eEEEecccccCCCCc---eEE--EecCh
Confidence             222 3 3578999999876 3   666  56655

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.77  E-value=5.8e-18  Score=166.73  Aligned_cols=174  Identities=14%  Similarity=0.046  Sum_probs=131.2

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH--hCCCC-----EEEEcCCCCcchHHHHhhC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER--YFPGA-----KVLISSPTWGNHKNIFNDA  197 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~--~~~gd-----~Vlv~~P~y~~~~~~~~~~  197 (363)
                      ..|..++++++++++....+...   .++  .+.||++++.++..++..  ..+||     +|+++.|+|+.+...++..
T Consensus       102 ~~g~~~l~~~l~~~la~~~g~~~---~~~--~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~  176 (474)
T 1wyu_B          102 AQGALRLMWELGEYLKALTGMDA---ITL--EPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMA  176 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSE---EEC--CCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHHCCCc---eee--cChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHC
Confidence            56777888888877765544421   233  389999998875322221  24887     9999999999999999999


Q ss_pred             CCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCC
Q 017967          198 RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (363)
Q Consensus       198 G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~  277 (363)
                      |++++.++++  +++.+|++.|+++++   ++++++++++| ||||.+.  +++++|.++|+++|+++|+|++|.....+
T Consensus       177 G~~vv~v~~~--~~~~~d~~~L~~~i~---~~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g  248 (474)
T 1wyu_B          177 GYQVREIPSG--PEGEVDLEALKRELG---PHVAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMG  248 (474)
T ss_dssp             TCEEEEECBC--TTSSBCHHHHHHHCS---TTEEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTT
T ss_pred             CCEEEEecCC--CCCCcCHHHHHHhhC---CCceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhcc
Confidence            9999999984  457899999999986   34677888887 6999873  46888999999999999999999765543


Q ss_pred             CCCCchhHHHHHHhcCCeEEEEEcCccccccc-c---ccceEEEEeeCC
Q 017967          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLY-A---ERIGAMNVVCSS  322 (363)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~-G---~RvG~i~~v~~~  322 (363)
                      ..     ....+    ...+++.|++|.|+.+ |   .|+||+  ++++
T Consensus       249 ~~-----~~~~~----g~di~~~s~~K~~~~p~g~gG~~~G~~--~~~~  286 (474)
T 1wyu_B          249 WA-----RPGDM----GFDVVHLNLHKTFTVPHGGGGPGSGPV--GVKA  286 (474)
T ss_dssp             TC-----CHHHH----TCSEEECCTTTTTCCCCTTSCCCCCCE--EECG
T ss_pred             CC-----CcccC----CCcEEEEeCccccccCCCCCCCCeEEE--EEcH
Confidence            11     11111    2457788999999877 5   599999  7763

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.76  E-value=1.1e-17  Score=162.28  Aligned_cols=184  Identities=20%  Similarity=0.124  Sum_probs=133.0

Q ss_pred             CccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCC
Q 017967           99 QPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFP  176 (363)
Q Consensus        99 ~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~  176 (363)
                      .++..+.+.++..........+.|..  .....++++++++++...       +.++   +.+|++|+.++  +..++.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~-------~~v~---~~sGt~A~~~~--l~~~~~~   96 (421)
T 2ctz_A           29 TSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGK-------AALA---TASGHAAQFLA--LTTLAQA   96 (421)
T ss_dssp             SCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCS-------EEEE---ESSHHHHHHHH--HHHHCCT
T ss_pred             ceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCC-------ceEE---ecCHHHHHHHH--HHHHhCC
Confidence            34455555555433321111244543  334689999999997432       2343   45669998888  4444679


Q ss_pred             CCEEEEcCCCCcchHHHH----hhCCCCeEEE-ecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHH
Q 017967          177 GAKVLISSPTWGNHKNIF----NDARVPWSEY-RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQW  251 (363)
Q Consensus       177 gd~Vlv~~P~y~~~~~~~----~~~G~~~~~v-~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~  251 (363)
                      ||+|+++.++|..+...+    +..|++++.+ +.+       |++.++++++   ++++++++++|+||||.+++   +
T Consensus        97 gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~---l  163 (421)
T 2ctz_A           97 GDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-------RPEEFLALTD---EKTRAWWVESIGNPALNIPD---L  163 (421)
T ss_dssp             TCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-------CHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---H
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-------CHHHHHHhhc---cCCeEEEEECCCCCCCcccC---H
Confidence            999999999999887765    6789999888 651       7899999886   35778888999999999998   6


Q ss_pred             HHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          252 EKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       252 ~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                      ++|.++|+++|+++|+|++|..+.+..   .  +.    .. ...+++.|++|.++.+|.|+|+++
T Consensus       164 ~~i~~~a~~~g~~livD~~~~~~g~~~---~--~~----~~-~~Di~~~s~~K~l~~~g~~~G~~~  219 (421)
T 2ctz_A          164 EALAQAAREKGVALIVDNTFGMGGYLL---R--PL----AW-GAALVTHSLTKWVGGHGAVIAGAI  219 (421)
T ss_dssp             HHHHHHHHHHTCEEEEECGGGGGGTSC---C--GG----GG-TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred             HHHHHHHHHcCCEEEEECCcccccccC---C--cc----cc-CCeEEEECCcccccCCCCcEEEEE
Confidence            778888999999999999983333321   1  11    11 245889999999999999999993

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.75  E-value=1e-17  Score=164.82  Aligned_cols=252  Identities=9%  Similarity=0.023  Sum_probs=156.1

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+||+..|.....-|+  -.+.+.+++.+.+.... +.|....+..+.+.++++.+....+  ...++|++  ++||++|
T Consensus        56 ~ylD~~s~~~~~~lGh--~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~--~~sGseA  128 (472)
T 3hmu_A           56 EILDAMAGLWCVNIGY--GRDELAEVAARQMRELP-YYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFF--AGGGSEA  128 (472)
T ss_dssp             EEECTTHHHHTCTTCB--CCHHHHHHHHHHHHHCS-CCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEE--ESSHHHH
T ss_pred             EEEECCCchhhccCCC--CCHHHHHHHHHHHHhcc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCCHHHH
Confidence            6899988754333343  25677777766554321 2233333344444555555433322  23468888  9999999


Q ss_pred             HHHHHHHHHHh------CCCCEEEEcCCCCcchHHHHhhCCC------------CeEEEecc---cCCCCCCC-------
Q 017967          164 LRLAAALIERY------FPGAKVLISSPTWGNHKNIFNDARV------------PWSEYRYY---DPKTVGLD-------  215 (363)
Q Consensus       164 l~l~~~l~~~~------~~gd~Vlv~~P~y~~~~~~~~~~G~------------~~~~v~~~---~~~~~~~d-------  215 (363)
                      ++.+..+....      .++++|++.+|+|.++.......+.            .+..++..   ...++ .|       
T Consensus       129 ~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~  207 (472)
T 3hmu_A          129 NDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLA  207 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHH
Confidence            99986655433      1458999999999887654433222            23344421   00111 33       


Q ss_pred             -HHHHHHHHHcCC-CCcEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc
Q 017967          216 -FEGMIADIKAAP-GGSFILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR  292 (363)
Q Consensus       216 -~~~l~~~l~~~~-~~~~~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  292 (363)
                       ++.|++.+.+.. +++.++++..++|++|... +++.+++|.++|+++|+++|+||+|.+|...+.   ...... ...
T Consensus       208 ~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~---~~a~~~-~~v  283 (472)
T 3hmu_A          208 RARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN---WFGTQT-MGI  283 (472)
T ss_dssp             HHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHHH-HTC
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc---cchhHH-hCC
Confidence             788888886422 3455666555566777655 889999999999999999999999999865431   222222 233


Q ss_pred             CCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHH--hhhccccCCCchHHHHHHhcccc
Q 017967          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLK--RLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       293 ~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~--~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      .++++   +|||.++..|+|+||+  +++ ++    +++.+.  .......++.++++|.++...|+
T Consensus       284 ~pdi~---t~sK~l~gg~~plG~v--~~~-~~----i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~  340 (472)
T 3hmu_A          284 RPHIM---TIAKGLSSGYAPIGGS--IVC-DE----VAHVIGKDEFNHGYTYSGHPVAAAVALENLR  340 (472)
T ss_dssp             CCSEE---EECGGGTTTSSCCEEE--EEE-HH----HHHHHTTSCBCCCCTTTTCHHHHHHHHHHHH
T ss_pred             CCcee---eechhhhcCCcceEEE--EEC-HH----HHHhcccCCccccCCCCCCHHHHHHHHHHHH
Confidence            34444   5899998555999999  665 66    555552  11223345778888888877665

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.75  E-value=1.5e-17  Score=159.14  Aligned_cols=191  Identities=12%  Similarity=-0.071  Sum_probs=134.1

Q ss_pred             cHHHHHHHHHHHccCCCCCCCC-CcchHHHHHHH-HHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCE
Q 017967          103 LDVVKKAENLMLERGENKEYLP-IEGLAAFNKVT-AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAK  179 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~-~~G~~~lr~ai-a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~  179 (363)
                      ++.+.+++.+.+..+.   |.+ .....+|++++ |+++. .      .+++++  +.||+.|+.++  +..+ +.|||+
T Consensus        15 ~~~i~~a~~~~~~~~~---~~~~~~~~~~l~~~~~a~~~g-~------~~~~v~--~~sgt~al~~a--l~~l~~~~Gd~   80 (377)
T 3ju7_A           15 VIEYLDELKEIDASHI---YTNYGPINQRFEQTIMSGFFQ-N------RGAVTT--VANATLGLMAA--IQLKKRKKGKY   80 (377)
T ss_dssp             GGGGHHHHHHHHHHTC---CSSSCHHHHHHHHHHHHHTST-T------CSEEEE--ESCHHHHHHHH--HHHHSCTTCCE
T ss_pred             cHHHHHHHHHHHHcCC---cccCCHHHHHHHHHHHHHHhC-C------CCeEEE--eCCHHHHHHHH--HHHcCCCCcCE
Confidence            4556666666554433   332 45678999999 99864 1      246666  89999998888  4455 679999


Q ss_pred             EEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHH-HcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHH
Q 017967          180 VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI-KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVI  258 (363)
Q Consensus       180 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~  258 (363)
                      |+++.|+|..+...++..|++++.++++ ++++.+|++.+++++ +.. .++++++   |+||||...+.   ++|.++|
T Consensus        81 Vi~~~~~~~~~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~~~-~~tk~v~---~~~~~G~~~~~---~~i~~la  152 (377)
T 3ju7_A           81 ALMPSFTFPATPLAAIWCGLEPYFIDIS-IDDWYMDKTVLWDKIEELK-EEVAIVV---PYATFGSWMNL---EEYEELE  152 (377)
T ss_dssp             EEEESSSCTHHHHHHHHTTCEEEEECBC-TTTCSBCHHHHHHHHHHHG-GGEEEEC---CBCGGGBCCCC---HHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHcCCEEEEEecC-CccCCcCHHHHHHHHhcCC-CCceEEE---EECCCCCccCH---HHHHHHH
Confidence            9999999999999999999999999985 357899999999988 421 1255555   67899998764   5566678


Q ss_pred             HhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHH
Q 017967          259 QEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLA  326 (363)
Q Consensus       259 ~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~  326 (363)
                      + +|+++|+|+++........    ...-  ....+-.++..+.+|.++. | +.|++  ++.+++..
T Consensus       153 ~-~~~~vi~D~a~a~g~~~~~----~~~g--~~~~d~~~~S~~~~K~l~~-g-~gG~~--~~~~~~l~  209 (377)
T 3ju7_A          153 K-KGVPVVVDAAPGFGLMNGG----MHYG--QDFSGMIIYSFHATKPFGI-G-EGGLI--YSKNEEDI  209 (377)
T ss_dssp             H-TTCCBEEECTTCTTCEETT----EETT--TTCSSEEEEECBTTSSSCC-B-SCEEE--EESCHHHH
T ss_pred             h-cCCEEEEECCCccCCeECC----Eecc--CCCCcEEEEECCCCCcCCC-C-CcEEE--EECCHHHH
Confidence            8 9999999999764332110    0000  0012333444445799984 6 68888  78878733

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.74  E-value=4.6e-17  Score=159.20  Aligned_cols=203  Identities=12%  Similarity=0.025  Sum_probs=144.4

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC---CcEEEEeccchhHHHHHHHHHHHH-h---
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE---QRVATVQGLSGTGSLRLAAALIER-Y---  174 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~---~~i~~~~t~ggt~al~l~~~l~~~-~---  174 (363)
                      ..+.+.+++...+.... .+|....|..++++++.+++....|.+.+.   ..+++  |.|||+|+.++...+.. .   
T Consensus        54 ~~~~v~e~~~~a~~~~~-~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~--t~ggtea~~~al~a~~~~~~~~  130 (452)
T 2dgk_A           54 DDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTN--TIGSSEACMLGGMAMKWRWRKR  130 (452)
T ss_dssp             CCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEE--ESSHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhccCC-CChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEE--eCCHHHHHHHHHHHHHHHHHHH
Confidence            44677777766654322 456666788888888877776655543221   13766  99999998887432211 0   


Q ss_pred             --CCC-----CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCC
Q 017967          175 --FPG-----AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT  247 (363)
Q Consensus       175 --~~g-----d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s  247 (363)
                        .+|     +.|++++ +|..+...++..|++++.+|+++ +++.+|++.|++++++   +++++++++|+||||.+.+
T Consensus       131 ~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~---~t~~v~~~~~~n~tG~~~~  205 (452)
T 2dgk_A          131 MEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDE---NTIGVVPTFGVTYTGNYEF  205 (452)
T ss_dssp             HHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCT---TEEEEECBBSCTTTCBBCC
T ss_pred             HHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHhh---CCEEEEEEcCCcCCcccCC
Confidence              155     5899999 99999999999999999999853 3689999999999873   5778888999999999965


Q ss_pred             HHHHHHHHHHHHhc------CCeEEEecCCCCCcC---CCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEE
Q 017967          248 PEQWEKIADVIQEK------NHIPFFDVAYQGFAS---GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNV  318 (363)
Q Consensus       248 ~~~~~~i~~~~~~~------~~~ii~De~y~~~~~---~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~  318 (363)
                         +++|.++|+++      ++++++|++|.++..   ... . ...    .....-..++.|++| |++.|+|+||+  
T Consensus       206 ---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~-~~~----~~~~~~d~~~~~~hK-~~~~~~~~G~~--  273 (452)
T 2dgk_A          206 ---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD-I-VWD----FRLPRVKSISASGHK-FGLAPLGCGWV--  273 (452)
T ss_dssp             ---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT-C-CCS----TTSTTEEEEEEETTT-TTCCCSSCEEE--
T ss_pred             ---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCcc-c-hhh----cCCCCCcEEEECccc-ccCCCCCeEEE--
Confidence               55666778885      999999999988642   110 0 000    111123456778899 65689999999  


Q ss_pred             eeCChh
Q 017967          319 VCSSSD  324 (363)
Q Consensus       319 v~~~~~  324 (363)
                      ++.+++
T Consensus       274 ~~~~~~  279 (452)
T 2dgk_A          274 IWRDEE  279 (452)
T ss_dssp             EESSGG
T ss_pred             EEcCHH
Confidence            776554

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.74  E-value=1.3e-18  Score=164.90  Aligned_cols=216  Identities=9%  Similarity=-0.019  Sum_probs=136.3

Q ss_pred             ccccHHHHHHHHHHHccCC--------CCCCCCCcchHHHHHHHHHHHhcCCCCcccCC-cE-EEEeccchhHHHHHHHH
Q 017967          100 PYVLDVVKKAENLMLERGE--------NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQ-RV-ATVQGLSGTGSLRLAAA  169 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~--------~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~-~i-~~~~t~ggt~al~l~~~  169 (363)
                      ..+++.+.+++.+.+....        ..+|.  .+..++++++.+.+....+.  .++ ++ ++  |.||++++.++  
T Consensus        13 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~g~--~~~~~~i~~--t~g~t~a~~~~--   84 (362)
T 2c0r_A           13 AALPLEVLERAQAEFVDYQHTGMSIMEMSHRG--AVYEAVHNEAQARLLALLGN--PTGYKVLFI--QGGASTQFAMI--   84 (362)
T ss_dssp             CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTS--HHHHHHHHHHHHHHHHHTTC--CSSEEEEEE--SSHHHHHHHHH--
T ss_pred             CCCCHHHHHHHHHHHhhhhhcCccccccCCCc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEEE--CCCchHHHHHH--
Confidence            4467788888776553210        01121  23344445555544443343  232 54 45  89999999988  


Q ss_pred             HHHHhCCCCEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCC--CCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCC
Q 017967          170 LIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVG--LDFEGMIADIKAAPGGSFILLHGCAHNPTGID  245 (363)
Q Consensus       170 l~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~--~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~  245 (363)
                      +..++.|||+|+++.+.+...  ...++..| +++.++++.+++++  +|.+.++  ++   ++++++++++|+||||..
T Consensus        85 ~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~---~~t~~v~~~~~~n~tG~~  158 (362)
T 2c0r_A           85 PMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ---DNAAYLHLTSNETIEGAQ  158 (362)
T ss_dssp             HHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC---TTEEEEEEESEETTTTEE
T ss_pred             HHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC---CCcCEEEEeCCcCcccee
Confidence            455578999999887764442  45667789 99999874222233  4666553  33   357888889999999997


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhH
Q 017967          246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL  325 (363)
Q Consensus       246 ~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~  325 (363)
                      ++  ++++|      +|+++|+|++|..+...   .   .+    ...  .+++.|+||.+|++|  +||+  +++ ++.
T Consensus       159 ~~--~l~~i------~~~~vivD~a~~~~~~~---~---~~----~~~--d~~~~s~~K~~g~~G--~G~l--~~~-~~~  213 (362)
T 2c0r_A          159 FK--AFPDT------GSVPLIGDMSSDILSRP---F---DL----NQF--GLVYAGAQKNLGPSG--VTVV--IVR-EDL  213 (362)
T ss_dssp             CS--SCCCC------TTSCEEEECTTTTTSSC---C---CG----GGC--SEEEEETTTTTCCSS--CEEE--EEE-GGG
T ss_pred             cc--ccccc------CCCEEEEEChhhccCCc---c---ch----hHC--cEEEEeccccccCcC--cEEE--EEc-HHH
Confidence            55  34444      89999999999866432   1   11    122  377889999999888  8999  665 452


Q ss_pred             HHHHHHHHHhh------------hccccCCCchHHHHHHhccccc
Q 017967          326 AARVKSQLKRL------------ARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       326 ~~~~~~~l~~~------------~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                          ++.+...            ......+++.+.|.++...|+.
T Consensus       214 ----~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~  254 (362)
T 2c0r_A          214 ----VAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKW  254 (362)
T ss_dssp             ----SSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH
T ss_pred             ----HhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHH
Confidence                2222211            1123457788888888766653

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.74  E-value=2.7e-19  Score=169.02  Aligned_cols=193  Identities=10%  Similarity=-0.023  Sum_probs=129.2

Q ss_pred             cEEeeccccCCCCCCccccHHHHHHHHHHHccCC---CCCCCC---Cc----chHHHHHHHHHHHhcCCCCcccCCcEEE
Q 017967           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE---NKEYLP---IE----GLAAFNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~Y~~---~~----G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      +++++.|.       +.+++.+.+++.+.+....   ...|..   ..    ...++++.+++++..    . ++++|++
T Consensus         4 ~~~~~~g~-------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~----~-~~~~v~~   71 (360)
T 1w23_A            4 VFNFNAGP-------SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQI----P-NDYQILF   71 (360)
T ss_dssp             CEECCSSS-------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTC----C-TTEEEEE
T ss_pred             eEeecCCC-------cCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCC----C-CCceEEE
Confidence            56666553       3456788888776653210   011111   22    345777788877632    1 2468877


Q ss_pred             Eeccch-hHHHHHHHHHHHHhCC---CCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHH-HHHcCCCC
Q 017967          155 VQGLSG-TGSLRLAAALIERYFP---GAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIA-DIKAAPGG  229 (363)
Q Consensus       155 ~~t~gg-t~al~l~~~l~~~~~~---gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~-~l~~~~~~  229 (363)
                        |.|+ ++++.++  +..++.+   ||.|+++.++|.. ...++..| +++.++++++ ++.+|++++++ .++   ++
T Consensus        72 --~~g~gt~al~~~--~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~-~~~~d~~~l~~~~i~---~~  141 (360)
T 1w23_A           72 --LQGGASLQFTML--PMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKA-NSYQSIPDFSEFQLN---EN  141 (360)
T ss_dssp             --ESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGG-GTSCSCCCGGGCCCC---TT
T ss_pred             --ECCcchHHHHHH--HHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEEeecccc-cCcCCccchHhhccC---CC
Confidence              8998 9998887  4455554   5667777666654 34467789 9999998532 33478888887 664   35


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      ++++++++||||||.+++  ++      ++++|+++|+|++|..+...   .   .+    ...  .++++|+||.+|.+
T Consensus       142 ~k~v~~~~~~nptG~~~~--~i------~~~~~~~li~D~a~~~~~~~---~---~~----~~~--di~~~s~sK~~~~~  201 (360)
T 1w23_A          142 DAYLHITSNNTIYGTQYQ--NF------PEINHAPLIADMSSDILSRP---L---KV----NQF--GMIYAGAQKNLGPS  201 (360)
T ss_dssp             EEEEEEESEETTTTEECS--SC------CCCCSSCEEEECTTTTTSSC---C---CG----GGC--SEEEEETTTTTSCT
T ss_pred             CCEEEEeCCCCCcceecc--cc------cccCCceEEEechhhcCCCC---c---Cc----ccC--CEEEEEcccccCCC
Confidence            778888999999999987  33      33799999999999876532   1   11    111  27899999999966


Q ss_pred             cccceEEEEeeCChh
Q 017967          310 AERIGAMNVVCSSSD  324 (363)
Q Consensus       310 G~RvG~i~~v~~~~~  324 (363)
                      |  +||+  +++ ++
T Consensus       202 G--~G~~--~~~-~~  211 (360)
T 1w23_A          202 G--VTVV--IVK-KD  211 (360)
T ss_dssp             T--CEEE--EEE-HH
T ss_pred             C--cEEE--EEc-HH
Confidence            6  8999  665 55

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.73  E-value=4.2e-17  Score=159.96  Aligned_cols=169  Identities=15%  Similarity=0.038  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC---CEEEEcCCCCcchHH----HHhhCCCC
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG---AKVLISSPTWGNHKN----IFNDARVP  200 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g---d~Vlv~~P~y~~~~~----~~~~~G~~  200 (363)
                      ..++++.+++++...      +++|++  |.|++++++++  +...+.+|   ++|+++.|+|+....    .++..|++
T Consensus       113 ~~~l~~~la~~~g~~------~~~v~~--t~g~t~al~~~--~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~  182 (465)
T 3e9k_A          113 DESIVGLMKDIVGAN------EKEIAL--MNALTVNLHLL--MLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLN  182 (465)
T ss_dssp             THHHHGGGHHHHTCC------GGGEEE--CSCHHHHHHHH--HHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcCCC------cCCEEE--ECCHHHHHHHH--HHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCc
Confidence            366889999986432      689988  99999999988  44445555   459999999987444    56678988


Q ss_pred             eE----EE-ecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCc
Q 017967          201 WS----EY-RYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFA  275 (363)
Q Consensus       201 ~~----~v-~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~  275 (363)
                      ++    .+ +.  ++++.+|++++++++.++.++++++++++||||||.+++.   ++|.++|+++|+++|+|+++....
T Consensus       183 ~~~~~v~~~~~--~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~la~~~g~~vi~D~a~~~g~  257 (465)
T 3e9k_A          183 IEESMRMIKPR--EGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNI---PAITKAGQAKGCYVGFDLAHAVGN  257 (465)
T ss_dssp             HHHHEEEECCC--TTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCH---HHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             ceeeeEEEecC--CCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecH---HHHHHHHHHcCCEEEEEhhhhcCC
Confidence            63    22 33  3457789999999997432357888999999999999985   566777999999999999976433


Q ss_pred             CCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          276 SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      ..      ..+..    ....+++.|++|.++....++|++  ++. ++
T Consensus       258 ~~------~~~~~----~~~D~~~~s~~K~l~~gp~~~g~l--~~~-~~  293 (465)
T 3e9k_A          258 VE------LYLHD----WGVDFACWCSYKYLNAGAGGIAGA--FIH-EK  293 (465)
T ss_dssp             SC------CCHHH----HTCCEEEECSSSTTCCCTTCCCEE--EEC-GG
T ss_pred             cC------Cchhh----cCCCEEEECcccccccCCCceEEE--EEc-HH
Confidence            21      11111    134578899999993223378999  554 55

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.73  E-value=1.7e-17  Score=162.34  Aligned_cols=245  Identities=11%  Similarity=0.026  Sum_probs=152.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHH-H-HHHH---HHccCCC--CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVK-K-AENL---MLERGEN--KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~-~-a~~~---~~~~~~~--~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      .++|+..|.+...-++  ..+.+. + ++.+   .......  ..| ......++++.+++++..     ..+++|++  
T Consensus        55 ~ylD~~~~~~~~~lG~--~~p~v~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~la~~la~~~~~-----~~~~~v~~--  124 (449)
T 2cjg_A           55 RYLDMFTFVASSALGM--NPPALVDDREFHAELMQAALNKPSNSDV-YSVAMARFVETFARVLGD-----PALPHLFF--  124 (449)
T ss_dssp             EEEESSHHHHTCSSCB--SCHHHHTCHHHHHHHHHHHTCCCCTTTC-CCHHHHHHHHHHHHHHCC-----TTCCEEEE--
T ss_pred             EEEEccCCccccCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCccc-CCHHHHHHHHHHHHhcCC-----CCCCEEEE--
Confidence            5789877764322232  245666 5 6555   3333211  113 333456777888887631     23578988  


Q ss_pred             ccchhHHHHHHHHHHHHh-C----------C-CCEEEEcCCCCcchHHHHh-hC--------CC-----CeEEEecccCC
Q 017967          157 GLSGTGSLRLAAALIERY-F----------P-GAKVLISSPTWGNHKNIFN-DA--------RV-----PWSEYRYYDPK  210 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~-~----------~-gd~Vlv~~P~y~~~~~~~~-~~--------G~-----~~~~v~~~~~~  210 (363)
                      ++||++|++++..+...+ .          + ||+|++.+|+|.++..... ..        |.     .++.+|..+..
T Consensus       125 ~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  204 (449)
T 2cjg_A          125 VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPG  204 (449)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTT
T ss_pred             eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCch
Confidence            999999999986543322 1          2 8999999999987654321 11        22     44555552200


Q ss_pred             CC--------CCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC-CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCC
Q 017967          211 TV--------GLDFEGMIADIKAAPGGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDN  281 (363)
Q Consensus       211 ~~--------~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~  281 (363)
                      ..        ..+++.|++.+++..++++++++...+|||| ..++.+++++|.++|+++|+++|+||+|.++...+.  
T Consensus       205 ~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~--  282 (449)
T 2cjg_A          205 LDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT--  282 (449)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--
T ss_pred             hhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc--
Confidence            01        1456668888864334456666554568999 599999999999999999999999999998865431  


Q ss_pred             chhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHH-----HhhhccccCCCchHHHHHHhccc
Q 017967          282 DASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQL-----KRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       282 ~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l-----~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                       ...... .+..++++   +|||.+     |+||+  +++ ++    +++.+     ........++.++++|.++...|
T Consensus       283 -~~~~~~-~~~~~di~---t~sK~l-----~iG~~--~~~-~~----~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal  345 (449)
T 2cjg_A          283 -AWAYQQ-LDVAPDIV---AFGKKT-----QVCGV--MAG-RR----VDEVADNVFAVPSRLNSTWGGNLTDMVRARRIL  345 (449)
T ss_dssp             -SSTHHH-HTCCCSEE---EECGGG-----SSEEE--EEC-GG----GGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHH
T ss_pred             -ceeecc-cCCCceEE---EecCcc-----cEEEE--EEC-HH----HhhhhhhcccCCcccccCCCCCHHHHHHHHHHH
Confidence             112222 23334433   789987     89999  776 55    34331     11122234567888888887666


Q ss_pred             c
Q 017967          357 N  357 (363)
Q Consensus       357 ~  357 (363)
                      +
T Consensus       346 ~  346 (449)
T 2cjg_A          346 E  346 (449)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.72  E-value=7.7e-17  Score=155.44  Aligned_cols=146  Identities=16%  Similarity=0.174  Sum_probs=95.2

Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcc---hHHHHhhCCC--CeEEEecccCCCCCCCHHHHHHHHHcCCCCcE
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGN---HKNIFNDARV--PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~---~~~~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                      +.||++++.++  +...+.+||+|+++.|+|..   +.......|.  +++.++.+ ++++++|++.+++.+++  .+++
T Consensus       100 ~~~Gs~a~~~a--l~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~--~~~~  174 (425)
T 3ecd_A          100 PHSGAQANGAV--MLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVS-RDTMLIDYDQVEALAQQ--HKPS  174 (425)
T ss_dssp             CSSHHHHHHHH--HHHHCCTTCEEEEECC------------------CEEEEECCC-TTTSSCCHHHHHHHHHH--HCCS
T ss_pred             cCchHHHHHHH--HHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCC-cccCccCHHHHHHHHhh--cCCc
Confidence            78889998877  44457799999999999987   3323234455  44455553 34588999999999974  1345


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCC-CCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc
Q 017967          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G  310 (363)
                      ++++++|+||+.     .++++|.++|+++|+++|+||+| .++.+.+..  ...    ...  ..+++.||||.+  +|
T Consensus       175 ~v~~~~~~~~~~-----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~--~~~----~~~--~di~~~s~sK~l--~g  239 (425)
T 3ecd_A          175 LIIAGFSAYPRK-----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGRH--ANP----VEH--AHVVTSTTHKTL--RG  239 (425)
T ss_dssp             EEEEECSCCCSC-----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSS--CCG----GGT--CSEEEEESSGGG--CC
T ss_pred             EEEEccccCCCc-----CCHHHHHHHHHHcCCEEEEECcChHhhhhcccc--cCc----hhc--CcEEEecCCccc--CC
Confidence            677788999753     34578888999999999999994 333332210  001    111  227899999988  68


Q ss_pred             ccceEEEEeeCChh
Q 017967          311 ERIGAMNVVCSSSD  324 (363)
Q Consensus       311 ~RvG~i~~v~~~~~  324 (363)
                      .|+||+  ++++++
T Consensus       240 ~~~g~~--~~~~~~  251 (425)
T 3ecd_A          240 PRGGFV--LTNDEE  251 (425)
T ss_dssp             CSCEEE--EESCHH
T ss_pred             CCcEEE--EeCCHH
Confidence            899999  887666

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.70  E-value=1.3e-16  Score=156.26  Aligned_cols=181  Identities=14%  Similarity=0.054  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH-HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEec
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG-SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY  206 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~-al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~  206 (363)
                      ..++.+++.+++.+..|..  ++ +++  |.|||+ ++.++...+....+|+.|+++++.|..+...++..|++++.+++
T Consensus       131 ~~~~~~~~~~~la~~~g~~--~~-~~~--t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~  205 (456)
T 2z67_A          131 MYALTNKILESFFKQLGLN--VH-AIA--TPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVET  205 (456)
T ss_dssp             HHHHHHHHHHHHHHHTTCC--CE-EEE--ESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHcCCC--CC-EEE--eCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEE
Confidence            3444444444443333332  23 666  999995 43323211111126788999999999999999999999999886


Q ss_pred             cc-CCCCCCCHHHHHHHH-HcC-CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCch
Q 017967          207 YD-PKTVGLDFEGMIADI-KAA-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (363)
Q Consensus       207 ~~-~~~~~~d~~~l~~~l-~~~-~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~  283 (363)
                      .. ++++.+|++.|++++ +.. ..+++++++++||||||.+.+   +++|.++|+++|+++++|++|..+..+-    .
T Consensus       206 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~----~  278 (456)
T 2z67_A          206 VLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY----L  278 (456)
T ss_dssp             EEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH----H
T ss_pred             eccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHh----h
Confidence            32 345789999999999 420 124667778999999999966   4566677999999999999998876420    0


Q ss_pred             hHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          284 SSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       284 ~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      +..........+ +++.|++|.++ .+.++||+  ++.+++
T Consensus       279 ~~~~~~~~~~~D-~~~~s~hK~~~-~p~g~G~l--~~~~~~  315 (456)
T 2z67_A          279 EKLKKAFKYRVD-AVVSSSDKNLL-TPIGGGLV--YSTDAE  315 (456)
T ss_dssp             HHHHHHHTSCCS-EEEEEHHHHHC-CCSSCEEE--EESCHH
T ss_pred             HHHHHhhCCCCC-EEEEcCCCCcC-CCCCeEEE--EEcCHH
Confidence            111111111333 56789999764 67999999  776666

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.69  E-value=3.6e-16  Score=149.59  Aligned_cols=150  Identities=14%  Similarity=0.110  Sum_probs=115.9

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH------
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER------  173 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~------  173 (363)
                      +.+.+.+.+++.+.+..   ..|.+..+..++++++++++..        +++++  +.+|++|+.++  +..+      
T Consensus        11 ~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~sGt~a~~~a--l~~~~~~~~~   75 (390)
T 3b8x_A           11 STWDDLEYKAIQSVLDS---KMFTMGEYVKQYETQFAKTFGS--------KYAVM--VSSGSTANLLM--IAALFFTKKP   75 (390)
T ss_dssp             CCCCHHHHHHHHHHHHH---TCCSSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHTTSSSSC
T ss_pred             CCCCHHHHHHHHHHHHc---CCCCCChHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH--HHHHHhhhhc
Confidence            45667777777766644   2466778899999999999743        24544  78888998887  4444      


Q ss_pred             -hCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHH
Q 017967          174 -YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWE  252 (363)
Q Consensus       174 -~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~  252 (363)
                       +.+||+|+++.|+|..+...++..|++++.+++++ +++.+|++.+++.+++   ++++++++|   ++|..   .+++
T Consensus        76 ~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~---~~~~v~~~~---~~g~~---~~~~  145 (390)
T 3b8x_A           76 RLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI-NTLNIDIESLKEAVTD---STKAILTVN---LLGNP---NNFD  145 (390)
T ss_dssp             SCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHHHHCCT---TEEEEEEEC---GGGCC---CCHH
T ss_pred             CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCc-cccCcCHHHHHHHhCc---CCeEEEEEC---CccCh---hhHH
Confidence             56899999999999999999999999999999853 3588999999998863   455666654   34433   4677


Q ss_pred             HHHHHHHhcCCeEEEecCCCCC
Q 017967          253 KIADVIQEKNHIPFFDVAYQGF  274 (363)
Q Consensus       253 ~i~~~~~~~~~~ii~De~y~~~  274 (363)
                      +|.++|+++|+++|+|++|...
T Consensus       146 ~i~~l~~~~~~~li~D~a~~~g  167 (390)
T 3b8x_A          146 EINKIIGGRDIILLEDNCESMG  167 (390)
T ss_dssp             HHHHHHTTSCCEEEEECTTCTT
T ss_pred             HHHHHHHHcCCEEEEECcCccc
Confidence            8888899999999999999843

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.68  E-value=1.5e-16  Score=157.03  Aligned_cols=208  Identities=13%  Similarity=0.084  Sum_probs=133.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCC------CCCCcchHHHHHHHHHHHhcCCCCcccC--CcEEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE------YLPIEGLAAFNKVTAELLFGADNSVLKE--QRVATV  155 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~------Y~~~~G~~~lr~aia~~l~~~~~~~~~~--~~i~~~  155 (363)
                      +.|+|..+++       ++++.+.+++...+......+      |....+..++++.+.+++....+...++  .+|.+ 
T Consensus        45 ~~i~L~a~e~-------~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~-  116 (483)
T 1rv3_A           45 VGLELIASEN-------FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQP-  116 (483)
T ss_dssp             SSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCC-
T ss_pred             cCeEEEcCCC-------CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEE-
Confidence            6899976653       357788888766654322112      3333455677766666555545543222  23555 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--------HhhCC--CCeEEEecccCCCCCCCHHHHHHHHHc
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI--------FNDAR--VPWSEYRYYDPKTVGLDFEGMIADIKA  225 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~--------~~~~G--~~~~~v~~~~~~~~~~d~~~l~~~l~~  225 (363)
                       ++|+ +++..+  +..++.|||+|++++|.|..+...        ++..|  +++++++++ ++++.+|++.|++.+++
T Consensus       117 -~sGs-~an~~~--~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~-~~~~~iD~d~le~~i~~  191 (483)
T 1rv3_A          117 -YSGS-PANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVN-PDTGYIDYDRLEENARL  191 (483)
T ss_dssp             -SSHH-HHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHHH
T ss_pred             -CCcH-HHHHHH--HHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccc-cCCCcCCHHHHHHHHhh
Confidence             6666 776665  455678999999999998877532        22233  334444443 34688999999999973


Q ss_pred             CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC-CCcCCCCCCchhHHHHHHhcCCeEEEEEcCcc
Q 017967          226 APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (363)
Q Consensus       226 ~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  304 (363)
                        .+++++++ +++||+ .+++   +++|.++|+++|+++|+|++|. ++...+...  .++    .  ...+++.|++|
T Consensus       192 --~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~--~p~----~--~~div~~s~~K  256 (483)
T 1rv3_A          192 --FHPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVP--SPF----E--HCHVVTTTTHK  256 (483)
T ss_dssp             --HCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC--CGG----G--TCSEEEEESSG
T ss_pred             --cCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCC--CCC----C--CCcEEEecCcc
Confidence              13456666 889998 7776   6677788999999999999975 333222111  111    1  12378899999


Q ss_pred             ccccccccceEEEEeeCCh
Q 017967          305 NLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       305 ~~~l~G~RvG~i~~v~~~~  323 (363)
                      .+  +|+|.||+  +++++
T Consensus       257 ~l--~GprgG~i--~~~~~  271 (483)
T 1rv3_A          257 TL--RGCRAGMI--FYRRG  271 (483)
T ss_dssp             GG--CCCSCEEE--EEECS
T ss_pred             cC--CCCCceEE--EEcch
Confidence            87  59999999  66643

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.68  E-value=5e-16  Score=153.76  Aligned_cols=238  Identities=11%  Similarity=0.017  Sum_probs=155.6

Q ss_pred             hhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC
Q 017967           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (363)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~  149 (363)
                      ..++.+.+...--++.++...-.|.+....+..++.+.+++...........|....+..++.+.+.+++....+.+ ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~  158 (497)
T 2qma_A           80 LKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EK  158 (497)
T ss_dssp             HHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TT
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CC
Confidence            34444444332223444444444555455566677776665443322222445555566777777666655544442 13


Q ss_pred             CcEEEEeccchhHHHHHHHHHHH--Hh---------CC------CC-EEEEcCCCCcchHHHHhhCCC---CeEEEeccc
Q 017967          150 QRVATVQGLSGTGSLRLAAALIE--RY---------FP------GA-KVLISSPTWGNHKNIFNDARV---PWSEYRYYD  208 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~--~~---------~~------gd-~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~  208 (363)
                      +++++  |.||++|+.++....+  .+         .+      |+ .|+++.+.|..+...++..|.   +++.+|++ 
T Consensus       159 ~~~~~--t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~-  235 (497)
T 2qma_A          159 ADGIF--TSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN-  235 (497)
T ss_dssp             CEEEE--ESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC-
T ss_pred             CCeEE--cCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecC-
Confidence            67877  9999999988754321  11         12      46 799999999999888888876   79999984 


Q ss_pred             CCCCCCCHHHHHHHHHcCC---CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhH
Q 017967          209 PKTVGLDFEGMIADIKAAP---GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (363)
Q Consensus       209 ~~~~~~d~~~l~~~l~~~~---~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  285 (363)
                       +++.+|++.|++.+.+..   .++.++++++++||||...+   +++|.++|+++|+++++|++|.++....   +...
T Consensus       236 -~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~---~~~~  308 (497)
T 2qma_A          236 -ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILS---SHKS  308 (497)
T ss_dssp             -TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGS---TTGG
T ss_pred             -CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhC---cchH
Confidence             468899999999997521   12447777889999999655   6677788999999999999998876532   1110


Q ss_pred             -HHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          286 -VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       286 -~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                       ... ++ ..+ +++.|++|.++.| .++|++  ++.++.
T Consensus       309 ~~~g-i~-~~D-~i~~s~hK~l~~p-~~~G~l--~~~~~~  342 (497)
T 2qma_A          309 RLKG-VE-RAH-SISVDFHKLFYQT-ISCGAL--LVNDKS  342 (497)
T ss_dssp             GGTT-GG-GCS-EEEEETTTTTCCC-SSCEEE--EESCGG
T ss_pred             hhcC-cc-cCC-EEEEcchhccCCC-cceEEE--EEeCHH
Confidence             000 11 122 5677899988855 799999  777665

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.68  E-value=1.5e-16  Score=155.34  Aligned_cols=203  Identities=18%  Similarity=0.186  Sum_probs=127.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCC---cchHHHH-------HHHHHHHhcCCCCcccCCcEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---EGLAAFN-------KVTAELLFGADNSVLKEQRVA  153 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~G~~~lr-------~aia~~l~~~~~~~~~~~~i~  153 (363)
                      +.|+|..+.+       +.++.+.+++.+.+......+|+..   .|...++       +.+++++    +..   ... 
T Consensus        46 ~~i~l~~~~~-------~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~----g~~---~~~-  110 (447)
T 3h7f_A           46 DTLEMIASEN-------FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALF----GAE---FAN-  110 (447)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH----TCS---EEE-
T ss_pred             CceeEecCCC-------CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHc----CCC---ceE-
Confidence            5788864432       2377888877655532222233221   2333222       4555554    221   122 


Q ss_pred             EEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchH-H--HHhh--CCCCeEEEecccCCCCCCCHHHHHHHHHcCCC
Q 017967          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK-N--IFND--ARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (363)
Q Consensus       154 ~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~-~--~~~~--~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (363)
                       +++.+|++|+..+  +...+.|||+|++++|+|..+. .  ....  .+..++.++++ ++++.+|++.+++++..  .
T Consensus       111 -v~~~sGs~a~~~a--~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~--~  184 (447)
T 3h7f_A          111 -VQPHSGAQANAAV--LHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVD-PATHLIDMDAVRATALE--F  184 (447)
T ss_dssp             -CCCSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCC-TTTCSCCHHHHHHHHHH--H
T ss_pred             -EEeCCHHHHHHHH--HHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcC-cccCCcCHHHHHHHHHh--c
Confidence             2267888898777  4555789999999999987732 1  1112  33455666663 34578999999999864  2


Q ss_pred             CcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC-CCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc
Q 017967          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG  307 (363)
Q Consensus       229 ~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~  307 (363)
                      +++++++++|+||++.     ++++|.++|+++|+++|+||+|. ++.+.+....  .    .+  ...+++.|+||.++
T Consensus       185 ~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~--~----~~--~~di~~~s~sK~l~  251 (447)
T 3h7f_A          185 RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS--P----VP--HADVVSTTVHKTLG  251 (447)
T ss_dssp             CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--S----TT--TCSEEEEESSGGGC
T ss_pred             CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC--C----CC--CCcEEEecCCcCCC
Confidence            3457777899999986     67888899999999999999963 3332211010  0    11  12377999999874


Q ss_pred             cccccceEEEEeeCChhH
Q 017967          308 LYAERIGAMNVVCSSSDL  325 (363)
Q Consensus       308 l~G~RvG~i~~v~~~~~~  325 (363)
                        |+|.||+  +++ ++.
T Consensus       252 --G~~gG~i--~~~-~~~  264 (447)
T 3h7f_A          252 --GGRSGLI--VGK-QQY  264 (447)
T ss_dssp             --CCSCEEE--EEC-GGG
T ss_pred             --CCCeEEE--EEC-HHH
Confidence              8999999  665 563

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.68  E-value=9.9e-16  Score=152.17  Aligned_cols=207  Identities=12%  Similarity=-0.017  Sum_probs=150.5

Q ss_pred             cHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh--------
Q 017967          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY--------  174 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~--------  174 (363)
                      +..+.+.+........ ..|....+..++++++++++.+..|.+..++.+++  |.|||+|+..+.......        
T Consensus       109 ~~~~~e~l~~~~~~~~-~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~--t~ggt~a~~~al~~a~~~~~~~~~~~  185 (511)
T 3vp6_A          109 IGLAGEWLTSTANTNM-FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTK  185 (511)
T ss_dssp             HHHHHHHHHHHHCCCS-SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEE--CCchHHHHHHHHHHHHHHhhhhhhhc
Confidence            3344555555554433 67888889999999999998777666555567877  999999987763322211        


Q ss_pred             ----CCCCEEEEcCCCCcchHHHHhhCCC---CeEEEecccCCCCCCCHHHHHHHHHcC---CCCcEEEEEcCCCCCCCC
Q 017967          175 ----FPGAKVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGI  244 (363)
Q Consensus       175 ----~~gd~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~i~~p~NPTG~  244 (363)
                          .+++.|+++.+.|..+...++..|+   +++.++.+  .++.+|++.|++++++.   ...+++++++.++||||.
T Consensus       186 G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~  263 (511)
T 3vp6_A          186 GMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGA  263 (511)
T ss_dssp             CGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCC
T ss_pred             CcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcc
Confidence                1567899999999999999999998   89999984  46899999999999752   112678888999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       245 ~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      +   +++++|+++|+++|+++++|++|........+. ...+.. ..  .-.+++.+++|.++.| ...|++  +..+++
T Consensus       264 v---d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~-~~~~~g-~~--~aDsv~~~~hK~l~~p-~g~g~l--~~~~~~  333 (511)
T 3vp6_A          264 F---DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKH-RHKLNG-IE--RANSVTWNPHKMMGVL-LQCSAI--LVKEKG  333 (511)
T ss_dssp             B---CCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTT-GGGGTT-GG--GCSEEEECTTSTTCCC-SCCEEE--EESSTT
T ss_pred             c---ccHHHHHHHHHHcCCEEEEEccchhhHhhChhh-hhhccC-Cc--cCCEEEECcccccCCC-cCeEEE--EEeCHH
Confidence            8   457788888999999999999998765422110 001000 01  1234567999999855 678988  777766

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.67  E-value=4.5e-16  Score=153.57  Aligned_cols=208  Identities=9%  Similarity=-0.090  Sum_probs=146.9

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCccc-------CCcEEEEeccchhHHHHHHHHHHHHh
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-------EQRVATVQGLSGTGSLRLAAALIERY  174 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-------~~~i~~~~t~ggt~al~l~~~l~~~~  174 (363)
                      .+..+.+.+........ ..|....+..++++++++++....|.+.+       ...+++  |.|||+|+.++.......
T Consensus        86 ~~~~~~~~~~~~~n~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~--t~ggTeA~~~al~~~~~~  162 (486)
T 1js3_A           86 YPAMLADMLCGAIGCIG-FSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVALLAARTK  162 (486)
T ss_dssp             HHHHHHHHHHHHHCCCC-SSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCc-cccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEE--cCCcHHHHHHHHHHHHHH
Confidence            44566676666664433 56766777889999998888766665432       245666  999999987773322111


Q ss_pred             -CC------CC----------EEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC---CCcEEEE
Q 017967          175 -FP------GA----------KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILL  234 (363)
Q Consensus       175 -~~------gd----------~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~  234 (363)
                       .+      ||          .|+++.++|..+...++..|++++.+|++  +++.+|++.|++++++..   ..+.+++
T Consensus       163 ~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv  240 (486)
T 1js3_A          163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVV  240 (486)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEE
Confidence             01      43          38889999999999999999999999983  478899999999997521   1135788


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccce
Q 017967          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG  314 (363)
Q Consensus       235 i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG  314 (363)
                      +++|+||||.+   +++++|+++|+++|+++++|++|.++.....  +......-+. ..+. ++.+++|.++.| +++|
T Consensus       241 ~~~~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~--~~~~~~~g~~-~ads-i~~~~hK~~~~p-~~~G  312 (486)
T 1js3_A          241 ATLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICP--EFRHLLNGVE-FADS-FNFNPHKWLLVN-FDCS  312 (486)
T ss_dssp             EEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGST--TTGGGGTTGG-GCSE-EEECHHHHSSCC-SSCE
T ss_pred             EeCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCH--HHHHHhcCcc-ccCe-eEEchhhhcCCC-cceE
Confidence            89999999977   5677788889999999999999987654211  1111100011 2233 457889999865 8999


Q ss_pred             EEEEeeCChh
Q 017967          315 AMNVVCSSSD  324 (363)
Q Consensus       315 ~i~~v~~~~~  324 (363)
                      |+  ++.++.
T Consensus       313 ~l--~~~~~~  320 (486)
T 1js3_A          313 AM--WVKRRT  320 (486)
T ss_dssp             EE--EESCHH
T ss_pred             EE--EEeCHH
Confidence            99  777665

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.67  E-value=1.3e-15  Score=150.97  Aligned_cols=202  Identities=12%  Similarity=-0.025  Sum_probs=141.3

Q ss_pred             HHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh------CCC----
Q 017967          108 KAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY------FPG----  177 (363)
Q Consensus       108 ~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~------~~g----  177 (363)
                      +.+........ ..|....+..++.+.+.+++....+.+.+++++++  |.|||+|+.++...+...      .+|    
T Consensus       111 ~~l~~~~n~~~-~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~--t~ggtea~~~al~~~~~~~~~~~~~~G~~~~  187 (504)
T 2okj_A          111 EWLTSTANTNM-FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYSIMAARYKYFPEVKTKGMAAV  187 (504)
T ss_dssp             HHHHHHHCCBS-SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHHHHHHHHHHCTTHHHHCGGGS
T ss_pred             HHHHHhhccCC-CchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEE--eCCcHHHHHHHHHHHHHHHhhHHhhcCcccc
Confidence            44444333322 45666667677777776665544444333567877  999999998874443211      146    


Q ss_pred             -C-EEEEcCCCCcchHHHHhhCCC---CeEEEecccCCCCCCCHHHHHHHHHcC---CCCcEEEEEcCCCCCCCCCCCHH
Q 017967          178 -A-KVLISSPTWGNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPE  249 (363)
Q Consensus       178 -d-~Vlv~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~i~~p~NPTG~~~s~~  249 (363)
                       + .|+++.+.|..+...++..|.   +++.+|++  +++.+|++.|++++.+.   ..+++++++++|+||||.+.+  
T Consensus       188 ~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~--  263 (504)
T 2okj_A          188 PKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP--  263 (504)
T ss_dssp             CCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC--
T ss_pred             CCeEEEECCcchHHHHHHHHHcCCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC--
Confidence             6 799999999999999988877   89999984  46889999999998741   114678888999999999865  


Q ss_pred             HHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          250 QWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       250 ~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                       +++|.++|+++|+++++|++|.++.....+. ...+.. +. ..+ +++.|++|.++.| .++|++  ++.+++
T Consensus       264 -l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~-~~~~~g-~~-~~D-~i~~~~hK~~~~p-~~~g~l--~~~~~~  330 (504)
T 2okj_A          264 -IQEIADICEKYNLWLHVDAAWGGGLLMSRKH-RHKLNG-IE-RAN-SVTWNPHKMMGVL-LQCSAI--LVKEKG  330 (504)
T ss_dssp             -HHHHHHHHHHHTCEEEEEETTGGGGGGCTTT-GGGGTT-GG-GCS-EEEECTTSTTCCC-SCCEEE--EESSTT
T ss_pred             -HHHHHHHHHHcCCEEEEehhhhhHHHhCHhh-HhhcCC-cc-cCC-EEEECchhhcCCC-cceEEE--EEECHH
Confidence             6677788999999999999998887532110 011110 11 223 5677899999855 789999  777665

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.67  E-value=5.4e-16  Score=149.29  Aligned_cols=189  Identities=16%  Similarity=0.165  Sum_probs=112.6

Q ss_pred             ccHHHHHHHHHHHccCCCCCCC------CCcchHHHH----HHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHH
Q 017967          102 VLDVVKKAENLMLERGENKEYL------PIEGLAAFN----KVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALI  171 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~lr----~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~  171 (363)
                      .++.+.+++.+.+......+|+      .......+.    +.+++++..      ++++|++  +. |++++.++  +.
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~v~~--~s-Gs~a~~~a--~~  110 (420)
T 3gbx_A           42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA------DYANVQP--HS-GSQANFAV--YT  110 (420)
T ss_dssp             CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC------SEEECCC--SS-HHHHHHHH--HH
T ss_pred             CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC------CCceeEe--cC-cHHHHHHH--HH
Confidence            4677888876655322111221      122222233    455555422      2455544  44 58888877  45


Q ss_pred             HHhCCCCEEEEcCCCCcchH---HHHhhCC--CCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCC
Q 017967          172 ERYFPGAKVLISSPTWGNHK---NIFNDAR--VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDP  246 (363)
Q Consensus       172 ~~~~~gd~Vlv~~P~y~~~~---~~~~~~G--~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~  246 (363)
                      ..+.+||+|+++.|+|..+.   ......|  +..+.++.+  .++.+|++.+++++++.  +++++++++|+||+  ..
T Consensus       111 ~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~~~--~~  184 (420)
T 3gbx_A          111 ALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEH--KPKMIIGGFSAYSG--VV  184 (420)
T ss_dssp             HHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHH--CCSEEEECCTTCCS--CC
T ss_pred             HhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhc--CCeEEEEecCccCC--cc
Confidence            55779999999999998743   2222233  344555553  56789999999999852  35577778899985  34


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEecCCCC-CcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          247 TPEQWEKIADVIQEKNHIPFFDVAYQG-FASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       247 s~~~~~~i~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      +   +++|.++|+++|+++|+||+|.. +...+.   ....   ..  ...+++.||||.++  |.|.||+  ++++
T Consensus       185 ~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~---~~~~---~~--~~di~~~s~sK~~~--g~~gg~~--~~~~  246 (420)
T 3gbx_A          185 D---WAKMREIADSIGAYLFVDMAHVAGLIAAGV---YPNP---VP--HAHVVTTTTHKTLA--GPRGGLI--LAKG  246 (420)
T ss_dssp             C---HHHHHHHHHHTTCEEEEECTTTHHHHHTTS---SCCS---TT--TSSEEEEESSGGGC--SCSCEEE--EESS
T ss_pred             C---HHHHHHHHHHcCCEEEEECCcchhceeccc---CCcc---cc--cCCEEEeecccCCC--CCCceEE--EEcC
Confidence            3   77888899999999999999743 222111   0000   11  23488999999885  6777999  7765

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.65  E-value=1.9e-16  Score=154.70  Aligned_cols=170  Identities=11%  Similarity=0.002  Sum_probs=118.8

Q ss_pred             CCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCe
Q 017967          122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPW  201 (363)
Q Consensus       122 Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~  201 (363)
                      |.+.....++++.+++ +..       .+++++  |+|+++++.++  +...+.+||+|+++.|+|..+...+...|+++
T Consensus        53 ~~~~~~~~~~~~~la~-~g~-------~~~v~~--~~G~t~a~~~~--~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~  120 (446)
T 2x3l_A           53 HHPEEVILKSMKQVEK-HSD-------YDGYFL--VNGTTSGILSV--IQSFSQKKGDILMARNVHKSVLHALDISQQEG  120 (446)
T ss_dssp             TSCSSHHHHHHHHHCS-CTT-------EEEEEE--SSHHHHHHHHH--HHTTTTSSSCEEECTTCCHHHHHHHHHHTCCE
T ss_pred             cCcchHHHHHHHHHHh-cCC-------CceEEE--eCCHHHHHHHH--HHHhcCCCCEEEEecCccHHHHHHHHHcCCeE
Confidence            4456667788888887 422       256766  99999999888  44456799999999999999999999999999


Q ss_pred             EEEecccCCC----CCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCC-CcC
Q 017967          202 SEYRYYDPKT----VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQG-FAS  276 (363)
Q Consensus       202 ~~v~~~~~~~----~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~-~~~  276 (363)
                      +.++...+++    +++|++.+   +.   ++++++++++ +|+||.+++   +++|+++|+++|+++|+||+|.. +.+
T Consensus       121 ~~v~~~~~~~~~~~~~~d~~~l---~~---~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f  190 (446)
T 2x3l_A          121 HFIETHQSPLTNHYNKVNLSRL---NN---DGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL  190 (446)
T ss_dssp             EECEEEECTTTSSEEEEEC-------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred             EEEeCeeccccCcCCCCCHHHH---cC---CCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence            9998732223    46788877   22   2355666677 566999988   56778889999999999999986 334


Q ss_pred             CCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          277 GSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      .+.   ..+.   ...+ ..+++.|+||.++ ++.++||+  +++++
T Consensus       191 ~~~---~~~~---~~~g-~Di~~~S~~K~l~-~~~g~g~l--~~~~~  227 (446)
T 2x3l_A          191 QGF---PDST---LNYQ-ADYVVQSFHKTLP-ALTMGSVL--YIHKN  227 (446)
T ss_dssp             TTS---CCCG---GGGT-CSEEEECHHHHSS-SCTTCEEE--EEETT
T ss_pred             CCC---CCCh---HHcC-CCEEEECCccccc-cccccEEE--EEcCC
Confidence            321   1111   1122 2388999999654 34568999  66543

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.45  E-value=1.4e-17  Score=163.11  Aligned_cols=243  Identities=15%  Similarity=0.039  Sum_probs=150.9

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      +.+++ .+||+..|.+...-|+  -.+.+.+++.+.+.......| +.....+|.+.+++++.       ..+++.+  +
T Consensus        96 D~dG~-~yiD~~~~~~~~~lGh--~~p~V~~Av~~q~~~~~~~~~-~~~~~~~Lae~L~~~~p-------~~~~v~~--~  162 (465)
T 2yky_A           96 DVDGH-AYVNFLGEYTAGLFGH--SHPVIRAAVERALAVGLNLST-QTENEALFAEAVCDRFP-------SIDLVRF--T  162 (465)
Confidence            44444 7899887765322222  234555555444433222334 44455677777777742       1367877  9


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCC--CeEEEecccCCCCCCCHHHHHHHHHcCCCCcE
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV--PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                      ++|++|++.+..+...+..+++|++.+++|.++...+.    ..|+  .++.+|.       -|++.+++.+++.+++++
T Consensus       163 nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~a  235 (465)
T 2yky_A          163 NSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCA  235 (465)
Confidence            99999999885543333455999999999977654332    2233  2233332       368889888874323455


Q ss_pred             EEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc
Q 017967          232 ILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G  310 (363)
                      ++++...+|+||... +.+.+++|.++|+++|+++|+||+|. +..+.    ......+    ....-+.+|||.+| .|
T Consensus       236 avi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~----~~a~~~~----gv~pDi~t~sK~lg-~G  305 (465)
T 2yky_A          236 AILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG----GGAQEML----GISADLTTLGKYIG-GG  305 (465)
Confidence            555444356699654 68889999999999999999999999 74331    1111111    11122458999999 59


Q ss_pred             ccceEEEEeeCChhHHHHHHHHHHh-----hhccccCCCchHHHHHHhcccc
Q 017967          311 ERIGAMNVVCSSSDLAARVKSQLKR-----LARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       311 ~RvG~i~~v~~~~~~~~~~~~~l~~-----~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +|+||+  +++ ++    +++.+..     ......++.++++|.++...|+
T Consensus       306 ~piG~v--~~~-~~----i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~  350 (465)
T 2yky_A          306 MSFGAF--GGR-RD----LMERFDPARDGAFAHAGTFNNNILTMSAGHAALT  350 (465)
Confidence            999999  665 55    4444443     1223445677888887766554

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.63  E-value=1.2e-14  Score=144.16  Aligned_cols=205  Identities=12%  Similarity=0.044  Sum_probs=144.7

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcE-EEEeccchhHHHHHHHHHHHHhCC--
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRV-ATVQGLSGTGSLRLAAALIERYFP--  176 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i-~~~~t~ggt~al~l~~~l~~~~~~--  176 (363)
                      .++.+.+.+++...+.... ..|....+..++++.+.+++....+.+.+++++ ..+.|.||++++.++.  +....+  
T Consensus        66 ~~~~~~v~~~l~~~~~~~~-~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~--~a~~~~~~  142 (502)
T 3hbx_A           66 TWMEPECDKLIMSSINKNY-VDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAG--LAFKRKWQ  142 (502)
T ss_dssp             CCCCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHH--HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhccCC-CChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHH--HHHHHHHh
Confidence            4456778888776654322 334455567777777777766666655333333 3334889999988773  333323  


Q ss_pred             ------CC-----EEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCC
Q 017967          177 ------GA-----KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID  245 (363)
Q Consensus       177 ------gd-----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~  245 (363)
                            |+     .|+++.++|..+...++..|++++.+|++ ++++.+|++.+++++.+   ++.++++++|+||||.+
T Consensus       143 ~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~-~~~~~~d~~~l~~~i~~---~t~~v~~~~~~n~tG~~  218 (502)
T 3hbx_A          143 NKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLS-EGYYVMDPQQAVDMVDE---NTICVAAILGSTLNGEF  218 (502)
T ss_dssp             HHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCB-TTBCSCCHHHHHHHCCT---TEEEEEEEBSCTTTCCB
T ss_pred             HHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecC-CCcCcCCHHHHHHHHhh---CCEEEEEecCCCCCCcc
Confidence                  76     89999999999999999999999999985 34488999999999873   56788889999999999


Q ss_pred             CCHHHHHHHHHHHHhc------CCeEEEecCCCCCc----CCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceE
Q 017967          246 PTPEQWEKIADVIQEK------NHIPFFDVAYQGFA----SGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       246 ~s~~~~~~i~~~~~~~------~~~ii~De~y~~~~----~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~  315 (363)
                      .+.+   +|.++|+++      |+++++|++|.++.    .....   ..    .....-.++..|..|.++ .+.++||
T Consensus       219 ~~l~---~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~---~~----~~~~~~D~v~~s~hK~l~-~p~g~G~  287 (502)
T 3hbx_A          219 EDVK---LLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE---WD----FRLPLVKSINVSGHKYGL-VYAGIGW  287 (502)
T ss_dssp             CCHH---HHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC---CS----TTSTTEEEEEEETTTTTC-CCSSCEE
T ss_pred             cCHH---HHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc---cc----cCCCCceEEEECcccccC-CCCCeEE
Confidence            7655   566668888      99999999998664    22110   00    011133456678899764 7888999


Q ss_pred             EEEeeCChh
Q 017967          316 MNVVCSSSD  324 (363)
Q Consensus       316 i~~v~~~~~  324 (363)
                      +  ++.+++
T Consensus       288 ~--~~~~~~  294 (502)
T 3hbx_A          288 V--IWRNKE  294 (502)
T ss_dssp             E--EESSGG
T ss_pred             E--EEeCHH
Confidence            9  666554

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.62  E-value=1.2e-14  Score=144.43  Aligned_cols=188  Identities=15%  Similarity=-0.011  Sum_probs=132.5

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-----hC-CCC------EEEEcCCCC
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-----YF-PGA------KVLISSPTW  187 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-----~~-~gd------~Vlv~~P~y  187 (363)
                      ..|....+..++.+.+.+++....|.+  ++++++  |.|||+|+.++......     +. +||      .|+++.+.|
T Consensus       138 ~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~--t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h  213 (515)
T 2jis_A          138 YTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIF--CPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECH  213 (515)
T ss_dssp             TCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEE--ESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC
T ss_pred             CchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEE--cCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCcc
Confidence            456666665555555444443333332  578877  99999998777433221     12 575      899999999


Q ss_pred             cchHHHHhhCCC---CeEEEecccCCCCCCCHHHHHHHHHcC---CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhc
Q 017967          188 GNHKNIFNDARV---PWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEK  261 (363)
Q Consensus       188 ~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~  261 (363)
                      +.+...++..|.   +++.+|++  +++.+|++.|++++.+.   ..+++++++++|+||||.+.+   +++|.++|+++
T Consensus       214 ~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~  288 (515)
T 2jis_A          214 YSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRH  288 (515)
T ss_dssp             THHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcEEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHc
Confidence            999999998888   89999984  46889999999999741   124678888999999999876   56777889999


Q ss_pred             CCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          262 NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       262 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      |+++++|++|..+......  ...  .+.......+++.|++|.++. +.++|++  ++.++
T Consensus       289 g~~l~vD~a~~~~~~~~~~--~~~--~~~g~~~aD~v~~s~hK~l~~-p~g~G~l--~~~~~  343 (515)
T 2jis_A          289 GLWLHVDAAWGGSVLLSQT--HRH--LLDGIQRADSVAWNPHKLLAA-GLQCSAL--LLQDT  343 (515)
T ss_dssp             TCEEEEEETTGGGGGGCTT--TGG--GGTTGGGCSEEEECTTSTTCC-CSCCEEE--EESCC
T ss_pred             CCeEEEehhhhhHHHhChh--hHh--hcCCCccCCEEEECcccccCC-CCCeeEE--EEeCh
Confidence            9999999999887654211  110  010111224778899999874 4679999  77766

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.61  E-value=3.7e-15  Score=154.20  Aligned_cols=171  Identities=13%  Similarity=0.081  Sum_probs=121.1

Q ss_pred             chHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEec
Q 017967          127 GLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY  206 (363)
Q Consensus       127 G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~  206 (363)
                      -..++++.+++++..       .+.+++  ++|+++++.++  +...+.|||.|+++.|+|..+...+...|++++.++.
T Consensus       206 ~v~~~ee~la~l~G~-------d~~i~~--~~Gtt~a~~~~--i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~  274 (755)
T 2vyc_A          206 AFGESEKYAARVFGA-------DRSWSV--VVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVP  274 (755)
T ss_dssp             HHHHHHHHHHHHHTC-------SEEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECC
T ss_pred             HHHHHHHHHHHHhCC-------CceEEE--CCcHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeC
Confidence            456777777777532       234555  88888998887  5566789999999999999998888889999999987


Q ss_pred             ccCCCCC----C-----CHHHHHHHHHcCCCC-------cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecC
Q 017967          207 YDPKTVG----L-----DFEGMIADIKAAPGG-------SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVA  270 (363)
Q Consensus       207 ~~~~~~~----~-----d~~~l~~~l~~~~~~-------~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~  270 (363)
                      .. ++++    +     |++.+++++++.++.       +++++++|| ||||.+.+   +++|+++|+++++++++||+
T Consensus       275 ~~-~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA  349 (755)
T 2vyc_A          275 SR-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEA  349 (755)
T ss_dssp             CB-CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECT
T ss_pred             CC-CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECc
Confidence            42 2333    4     999999999763321       236667888 79999976   56677889999999999999


Q ss_pred             CCCC-cCCCCCCchhHHHHH--Hh-cCCeEEEEEcCccccccccccceEE
Q 017967          271 YQGF-ASGSLDNDASSVRLF--AT-RGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       271 y~~~-~~~~~~~~~~~~~~~--~~-~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      |... .+++.-.+.... ..  .+ ..++++++.|++|.+  +|++.|.+
T Consensus       350 ~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~  396 (755)
T 2vyc_A          350 WYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLL--NALSQASY  396 (755)
T ss_dssp             TCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSS--SCCTTCEE
T ss_pred             CchhcccCcccCCcchh-cCCcCCccCCCeEEEECccccc--cCcCCeee
Confidence            8754 222100000111 01  12 235788999999975  58885555

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.61  E-value=1.1e-14  Score=139.08  Aligned_cols=170  Identities=15%  Similarity=0.128  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchH--HHHhhCCC--CeEEE
Q 017967          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHK--NIFNDARV--PWSEY  204 (363)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~--~~~~~~G~--~~~~v  204 (363)
                      .++++.+++++..       ++.+++  |.|||++++++.   ..+.+||+|++.+++|..+.  ..++..|+  +++.+
T Consensus        38 ~~~~~~l~~~~~~-------~~~v~~--~~sgt~a~~~~~---~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~  105 (379)
T 3ke3_A           38 NDLLSNLKTVYNA-------EAAVII--PGSGTYGMEAVA---RQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVL  105 (379)
T ss_dssp             HHHHHHHHHHHTC-------SEEEEE--ESCHHHHHHHHH---HHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEE
T ss_pred             HHHHHHHHHHhCC-------CCEEEE--cCChhHHHHHHH---HhCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEE
Confidence            3556666666522       146666  899999999873   44679999999999997653  34555664  67777


Q ss_pred             ecccC------CC-CCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCC
Q 017967          205 RYYDP------KT-VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASG  277 (363)
Q Consensus       205 ~~~~~------~~-~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~  277 (363)
                      +.+..      .. ..+|++.+++.+++  ++++++++++++||||..++.+++++|.++|+++|+++|+|+++.  .  
T Consensus       106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--  179 (379)
T 3ke3_A          106 TAERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS--G--  179 (379)
T ss_dssp             ECEESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC--T--
T ss_pred             eccccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc--C--
Confidence            76321      01 25899999999963  134567778889999999999999999999999999999999965  2  


Q ss_pred             CCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHH
Q 017967          278 SLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAA  327 (363)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~  327 (363)
                      ..   ...+..+    .-.+++.|++|.++ .+.++|++  ++. ++.++
T Consensus       180 ~~---~~~~~~~----~~d~~~~s~~K~l~-~~~g~g~~--~~~-~~~~~  218 (379)
T 3ke3_A          180 CV---WLDMKEL----GIDVLISAPQKGWS-STPCAGLV--MLS-AAAIK  218 (379)
T ss_dssp             TC---CCCHHHH----TCSEEEECTTTTTC-SCCCEEEE--EEC-HHHHH
T ss_pred             Cc---ccccccc----CCCEEEecchhhcC-CCCceEEE--EEC-HHHHH
Confidence            11   1112111    23577889999886 34568998  654 66333

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.60  E-value=3.8e-15  Score=142.75  Aligned_cols=197  Identities=16%  Similarity=0.163  Sum_probs=121.6

Q ss_pred             cHHHHHHHHHHHccCCCCCCC------CCcchHHHH----HHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHH
Q 017967          103 LDVVKKAENLMLERGENKEYL------PIEGLAAFN----KVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE  172 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~------~~~G~~~lr----~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~  172 (363)
                      ++.+.+++.+.+.......|.      ......+++    +++++++...      ++.+++  + +|++++.++  +..
T Consensus        36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~------~~~i~~--~-sGt~a~~~a--~~~  104 (405)
T 2vi8_A           36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE------HANVQP--H-SGAQANMAV--YFT  104 (405)
T ss_dssp             CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS------EEECCC--S-SHHHHHHHH--HHH
T ss_pred             CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC------ceEEEe--c-CcHHHHHHH--HHH
Confidence            677888876655321111221      112234444    5788876321      333333  4 459999888  444


Q ss_pred             HhCCCCEEEEcCCCCcchHH-H--HhhCC--CCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCC
Q 017967          173 RYFPGAKVLISSPTWGNHKN-I--FNDAR--VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPT  247 (363)
Q Consensus       173 ~~~~gd~Vlv~~P~y~~~~~-~--~~~~G--~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s  247 (363)
                      .+.+||.|+++.|+|..+.. .  +...|  ++++.++++ ++++.+|++.+++.+++.  +++++++ +|+|+ |... 
T Consensus       105 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~i~~~--~~~~v~~-~~~~~-~~~~-  178 (405)
T 2vi8_A          105 VLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVD-PETHVIDYDDVREKARLH--RPKLIVA-AAAAY-PRII-  178 (405)
T ss_dssp             HCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHHHH--CCSEEEE-CCSSC-CSCC-
T ss_pred             hcCCCCEEEEecccccchhcccchhhhccceeEEEecccc-cccCCcCHHHHHHHHHhc--CCeEEEE-eCCCC-CccC-
Confidence            46799999999999987753 1  12333  366777663 246789999999999741  2345554 55554 3333 


Q ss_pred             HHHHHHHHHHHHhcCCeEEEecCCCCCcC-CCCCCchhHHHHHHhcCCeEEEEEcCccccc-cccccceEEEEeeCChhH
Q 017967          248 PEQWEKIADVIQEKNHIPFFDVAYQGFAS-GSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAMNVVCSSSDL  325 (363)
Q Consensus       248 ~~~~~~i~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i~~v~~~~~~  325 (363)
                        ++++|.++|+++|+++|+||+|..... .+.  ....    ...  ..++++||||.++ .+|   ||+  +++ ++ 
T Consensus       179 --~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~----~~~--~di~~~s~sK~~~g~~g---G~~--~~~-~~-  241 (405)
T 2vi8_A          179 --DFAKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNP----VPY--AHFVTTTTHKTLRGPRG---GMI--LCQ-EQ-  241 (405)
T ss_dssp             --CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCS----TTT--CSEEEEESSSTTCCCSC---EEE--EEC-HH-
T ss_pred             --CHHHHHHHHHHcCCEEEEEccccccccccCc--CCCc----ccc--CCEEEEeccccCCCCCC---eEE--EEc-HH-
Confidence              367888889999999999999983221 111  0111    111  2288999999997 566   999  665 66 


Q ss_pred             HHHHHHHHHhh
Q 017967          326 AARVKSQLKRL  336 (363)
Q Consensus       326 ~~~~~~~l~~~  336 (363)
                         +++.+...
T Consensus       242 ---~~~~l~~~  249 (405)
T 2vi8_A          242 ---FAKQIDKA  249 (405)
T ss_dssp             ---HHHHHHHH
T ss_pred             ---HHHHHHhh
Confidence               44444444

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.58  E-value=3.7e-15  Score=142.99  Aligned_cols=199  Identities=9%  Similarity=-0.069  Sum_probs=120.0

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCC-CCCCCC--cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccc
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLS  159 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~g  159 (363)
                      +..++++.|.       ..+++.+.+++.+....... ..+.+.  ....++|+.+++++.    .. .+++|++ .|.|
T Consensus        39 ~~~~~~~~~~-------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~~-~~~~i~~-~t~g  105 (398)
T 2fyf_A           39 PRDGRFGSGP-------SKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFS----LP-DGYEVIL-GNGG  105 (398)
T ss_dssp             CSSCBCCSSS-------CCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTT----CC-TTCEEEE-EETC
T ss_pred             cCCccccCCC-------CCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhC----CC-CCceEEE-eCCc
Confidence            4566776443       34567777776542101110 123222  134677778887752    22 2346531 3899


Q ss_pred             hhHHHHHHHHHHHHhCCCCEEEEcCCCCcc-hHHHHhhC--CCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEc
Q 017967          160 GTGSLRLAAALIERYFPGAKVLISSPTWGN-HKNIFNDA--RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHG  236 (363)
Q Consensus       160 gt~al~l~~~l~~~~~~gd~Vlv~~P~y~~-~~~~~~~~--G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~  236 (363)
                      |+++++++  +..++.+| .+.+..+.|.. +...+...  |.+++.++++  ++...+. .    +.   +++++++++
T Consensus       106 ~t~al~~~--~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~-~----i~---~~~~~v~~~  172 (398)
T 2fyf_A          106 ATAFWDAA--AFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEP-Q----TD---PSVDVIAWA  172 (398)
T ss_dssp             HHHHHHHH--HHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCC-C----CC---TTCSEEEEE
T ss_pred             hhHHHHHH--HHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCc-c----cc---CCCCEEEEe
Confidence            99999988  44446676 23333333321 12234555  8899899874  2233332 1    22   345677778


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          237 CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       237 ~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      +|+||||.+++.+++.++      +|+++|+|++|..+...   .+   +    ..  ..+++.|+||.+|.+| ++||+
T Consensus       173 ~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~---~~---~----~~--~di~~~s~sK~~~~~g-g~g~l  233 (398)
T 2fyf_A          173 HNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLP---VD---I----AE--TDAYYFAPQKNFASDG-GLWLA  233 (398)
T ss_dssp             SEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSC---CC---G----GG--CSEEEECTTSTTCSCS-SEEEE
T ss_pred             CcCCCcceecchHHhhhh------cCCeEEEEeccccCCcc---cC---c----cc--CcEEEEecCcccCCCC-ceEEE
Confidence            999999999998887765      89999999999876532   11   1    11  3478999999999775 69998


Q ss_pred             EEeeCChhHHHHH
Q 017967          317 NVVCSSSDLAARV  329 (363)
Q Consensus       317 ~~v~~~~~~~~~~  329 (363)
                        +++ ++.++++
T Consensus       234 --~~~-~~~~~~l  243 (398)
T 2fyf_A          234 --IMS-PAALSRI  243 (398)
T ss_dssp             --EEC-HHHHHHH
T ss_pred             --EEC-HHHHHHh
Confidence              665 6644443

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.57  E-value=6.7e-15  Score=151.18  Aligned_cols=175  Identities=11%  Similarity=-0.021  Sum_probs=122.7

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-HhhCCCCeE
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-FNDARVPWS  202 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~-~~~~G~~~~  202 (363)
                      +..-..++++.+|+++..       +..+++  ++|+++++.++  +..++.+||.|+++.|+|..+... ++..|++++
T Consensus       171 ~~~~i~e~e~~lA~~~ga-------e~~i~v--~nGtt~an~~a--i~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v  239 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVYNA-------DKTYFV--LGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPV  239 (730)
T ss_dssp             TBTHHHHHHHHHHHHTTC-------SEEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred             ChHHHHHHHHHHHHHHCC-------CcEEEE--CCHHHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEE
Confidence            444568899999998633       234555  88888998877  556678999999999999988887 888999998


Q ss_pred             EEecccCCCCC----CCHHHH-----HHHHHcCC-C-----Cc-EEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEE
Q 017967          203 EYRYYDPKTVG----LDFEGM-----IADIKAAP-G-----GS-FILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPF  266 (363)
Q Consensus       203 ~v~~~~~~~~~----~d~~~l-----~~~l~~~~-~-----~~-~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii  266 (363)
                      .++... ++++    +|++.|     ++++++.+ +     ++ +++++++| ||||.+.+   +++|+++|++++++++
T Consensus       240 ~v~~~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~li  314 (730)
T 1c4k_A          240 YLQTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIE  314 (730)
T ss_dssp             EECEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEE
T ss_pred             EEeCCc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEE
Confidence            887642 2333    688888     88886431 0     11 57777888 69999875   5677888999999999


Q ss_pred             EecCCCCC-cCCCCCCchhHHHH--HHhcCCeEEEEEcCccccccccccceEE
Q 017967          267 FDVAYQGF-ASGSLDNDASSVRL--FATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       267 ~De~y~~~-~~~~~~~~~~~~~~--~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      +||+|... .+++.-+....+..  +....++++++.|+||.+  +|++.|.+
T Consensus       315 vDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~  365 (730)
T 1c4k_A          315 FDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQ  365 (730)
T ss_dssp             EECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEE
T ss_pred             EEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEE
Confidence            99998753 33210000000100  000124679999999975  58887766

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.55  E-value=2.3e-14  Score=141.09  Aligned_cols=204  Identities=15%  Similarity=0.156  Sum_probs=116.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCC---cch---HHHH----HHHHHHHhcCCCCcccCCcE-
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPI---EGL---AAFN----KVTAELLFGADNSVLKEQRV-  152 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~G~---~~lr----~aia~~l~~~~~~~~~~~~i-  152 (363)
                      +.|+|..++       .++++.|.+++...+......+|+..   .|.   .++.    +.+++++...      .+.+ 
T Consensus        55 ~~i~lias~-------n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~------~~~~~  121 (490)
T 2a7v_A           55 RGLELIASE-------NFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLD------PAQWG  121 (490)
T ss_dssp             HSEECCTTC-------CCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCC------TTTEE
T ss_pred             cCceEECCC-------CCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCC------cccCc
Confidence            567877544       23578888887665533222233221   122   3455    5666664322      2222 


Q ss_pred             EEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH--------HHhhCCCC--eEEEecccCCCCCCCHHHHHHH
Q 017967          153 ATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN--------IFNDARVP--WSEYRYYDPKTVGLDFEGMIAD  222 (363)
Q Consensus       153 ~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~G~~--~~~v~~~~~~~~~~d~~~l~~~  222 (363)
                      ..+++.+|++|+.++  +..++.|||+|++.++.|.++..        .+...|..  ++.++++ ++++.+|++.+++.
T Consensus       122 ~~v~~~sGt~An~~a--l~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd-~~~~~iD~d~le~~  198 (490)
T 2a7v_A          122 VNVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALT  198 (490)
T ss_dssp             EECCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCBC-TTTCSBCHHHHHHH
T ss_pred             eEEeCCchHHHHHHH--HHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccc-cccCCcCHHHHHHH
Confidence            223366889998777  66678899999999998865431        22344544  3444443 34678999999999


Q ss_pred             HHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCC-CCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          223 IKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       223 l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      +.+.  ++++++++.++||+.  .   ++++|.++|+++|+++++|+++ .++...+..+  .++    + + -.+++.|
T Consensus       199 l~~~--~~klIi~~~s~~~~~--~---dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~--~~~----~-~-aDiv~~S  263 (490)
T 2a7v_A          199 ARLF--RPRLIIAGTSAYARL--I---DYARMREVCDEVKAHLLADMAHISGLVAAKVIP--SPF----K-H-ADIVTTT  263 (490)
T ss_dssp             HHHH--CCSEEEECCSSCCSC--C---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC--CGG----G-T-CSEEEEE
T ss_pred             Hhhc--CCcEEEEcCCCCCCc--c---cHHHHHHHHHHcCCEEEEccccccccccCCcCC--CCC----C-C-CCEEEEC
Confidence            8642  345777788999863  2   4778888899999999999994 3433222111  111    1 1 2377899


Q ss_pred             CccccccccccceEEEEeeCC
Q 017967          302 YSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      ++|.++  |.|.|++  ++++
T Consensus       264 ~hK~l~--Gp~GG~i--~~~~  280 (490)
T 2a7v_A          264 THKTLR--GARSGLI--FYRK  280 (490)
T ss_dssp             SSGGGC--SCSCEEE--EEEC
T ss_pred             CcccCc--cccchhe--eecc
Confidence            999884  7888999  6664

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.51  E-value=1.3e-13  Score=135.90  Aligned_cols=206  Identities=8%  Similarity=-0.109  Sum_probs=145.1

Q ss_pred             cHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC--------CcEEEEeccchhHHHHHHHHHHHHh
Q 017967          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE--------QRVATVQGLSGTGSLRLAAALIERY  174 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~--------~~i~~~~t~ggt~al~l~~~l~~~~  174 (363)
                      +..+.+.+........ ..|....+..++++.+++++.+..+.+...        ...++  |.|||+|+.++....+..
T Consensus        92 ~~~~~~~~~~~~n~~~-~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~--~~ggt~an~~al~~ar~~  168 (481)
T 4e1o_A           92 PSLLGDMLADAINCLG-FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVL--QSTVSESTLIALLAARKN  168 (481)
T ss_dssp             HHHHHHHHHHHHCCCC-SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEE--ESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccc-CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEE--eCchHHHHHHHHHHHHHH
Confidence            4455555555554433 678888899999999999887665554221        24555  899999987764322111


Q ss_pred             -----------------CCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC---CCcEEEE
Q 017967          175 -----------------FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILL  234 (363)
Q Consensus       175 -----------------~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~  234 (363)
                                       .+++.|+++.++|..+...++..|++++.+|.+  +++.+|++.|++++++..   ..+++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv  246 (481)
T 4e1o_A          169 KILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVC  246 (481)
T ss_dssp             HHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEE
Confidence                             157899999999999999998899999999983  578999999999997521   1256777


Q ss_pred             EcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-CCeEEEEEcCccccccccccc
Q 017967          235 HGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERI  313 (363)
Q Consensus       235 i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~l~G~Rv  313 (363)
                      .+.++|+||.+   +++++|+++|++||+++++|++|........  ..   +..... ..-..+..+++|.++.| .-.
T Consensus       247 ~~~~~t~~G~i---d~l~~I~~la~~~~~~lhvDaA~g~~~~~~~--~~---~~~~~gi~~aDsi~~~~hK~l~~p-~g~  317 (481)
T 4e1o_A          247 ATLGTTGVCAF---DCLSELGPICAREGLWLHIDAAYAGTAFLCP--EF---RGFLKGIEYADSFTFNPSKWMMVH-FDC  317 (481)
T ss_dssp             EEBSCTTTCCB---CCHHHHHHHHHHHTCEEEEECTTGGGGGGSG--GG---GGGGTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred             EecCCCCCcCc---CCHHHHHHHHHHcCCeEEeehhhHHHHHhCh--hh---HHHhcCcccCCEEEEChHHhcCCC-Cce
Confidence            78899999987   4577788889999999999999987643211  11   111110 01134567899988865 446


Q ss_pred             eEEEEeeCChh
Q 017967          314 GAMNVVCSSSD  324 (363)
Q Consensus       314 G~i~~v~~~~~  324 (363)
                      |++  +..++.
T Consensus       318 g~l--~~~~~~  326 (481)
T 4e1o_A          318 TGF--WVKDKY  326 (481)
T ss_dssp             EEE--EESBHH
T ss_pred             EEE--EEeCHH
Confidence            777  666565

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.49  E-value=8.2e-14  Score=142.23  Aligned_cols=169  Identities=11%  Similarity=0.072  Sum_probs=118.5

Q ss_pred             CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEE
Q 017967          124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE  203 (363)
Q Consensus       124 ~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~  203 (363)
                      +..-+.++++.+|+++...       ..+++  ++|+++|+..+  +..++.|||.|+++.++|..+...+...|++++.
T Consensus       193 ~~g~i~eaE~~lA~~fGa~-------~a~~v--~nGts~An~~a--i~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~  261 (715)
T 3n75_A          193 HSGPHKEAEQYIARVFNAD-------RSYMV--TNGTSTANKIV--GMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIY  261 (715)
T ss_dssp             TBTHHHHHHHHHHHHHTCS-------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEE
T ss_pred             CcHHHHHHHHHHHHHhCCC-------CceEE--CcHHHHHHHHH--HHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEE
Confidence            4444678999999996442       34444  77778887666  5667889999999999999999999999999999


Q ss_pred             EecccCCCCCC---------CHHHHHHHHHcCCCC--cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC
Q 017967          204 YRYYDPKTVGL---------DFEGMIADIKAAPGG--SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ  272 (363)
Q Consensus       204 v~~~~~~~~~~---------d~~~l~~~l~~~~~~--~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~  272 (363)
                      ++... +++++         |++.+++++++.++.  ++++++++| ||+|.+++.+++.   ++|+++  .+++||+|.
T Consensus       262 v~~~~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~---ela~~~--~livDEAH~  334 (715)
T 3n75_A          262 FRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIK---KTLDVK--SIHFDSAWV  334 (715)
T ss_dssp             ECCCB-CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHH---HHCCCS--EEEEECTTC
T ss_pred             Eeccc-cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHH---HHhCcC--cEEEccccc
Confidence            98642 34553         899999999865421  236777899 9999999766554   456655  378999997


Q ss_pred             CCc-CCCCCCchhHHHHHHhc---CCe-EEEEEcCcccccccccc-ceEE
Q 017967          273 GFA-SGSLDNDASSVRLFATR---GME-LLVAQSYSKNLGLYAER-IGAM  316 (363)
Q Consensus       273 ~~~-~~~~~~~~~~~~~~~~~---~~~-vi~~~S~SK~~~l~G~R-vG~i  316 (363)
                      ... +.+.   .+.... +..   .+. +++++|++|.++  |+. .|++
T Consensus       335 ~~~~f~~~---~~~~~a-l~~g~~aD~vii~~~S~hKtL~--gltqgs~i  378 (715)
T 3n75_A          335 PYTNFSPI---YEGKCG-MSGGRVEGKVIYETQSTHKLLA--AFSQASMI  378 (715)
T ss_dssp             TTGGGSGG---GTTSST-TSSSCCTTCEEEEEECHHHHSS--CCTTCEEE
T ss_pred             cccccCCc---cccccc-cccCcCCCEEEEEEeccccccc--CCCCeeEE
Confidence            653 3311   100000 111   133 367999999975  663 4666

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.49  E-value=1.9e-13  Score=132.99  Aligned_cols=160  Identities=9%  Similarity=-0.000  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----hhCCCCeEE
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----NDARVPWSE  203 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----~~~G~~~~~  203 (363)
                      ..++++.+++++..      +++++++  +.|++.+.+.+...+ .+.+||+|+++.|+|+.+...+    +..|++++.
T Consensus       110 ~~~~~~~la~~~g~------~~~~i~~--~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~  180 (438)
T 1wyu_A          110 TFEYQTMIAELAGL------EIANASM--YDGATALAEGVLLAL-RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT  180 (438)
T ss_dssp             HHHHHHHHHHHHTS------SEECSCB--SSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhCC------CccceEE--eCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEE
Confidence            34666777777532      2456766  899995555442222 3468999999999999988665    458999999


Q ss_pred             EecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCch
Q 017967          204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDA  283 (363)
Q Consensus       204 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~  283 (363)
                      ++.   +++.+|++.    +.   ++++++++++| ||||.+.+   +++|.++|+++|+++++|..-..+..-.    .
T Consensus       181 v~~---~~~~~d~~~----i~---~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~~----~  242 (438)
T 1wyu_A          181 LPL---EGGRTPLPE----VG---EEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVLK----P  242 (438)
T ss_dssp             ECC---BTTBCCCCC----CC---TTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTBC----C
T ss_pred             EcC---cCCccCHHH----hC---CCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCcC----C
Confidence            986   235677766    33   35778888999 99999984   6677788999999999663311121100    1


Q ss_pred             hHHHHHHhcCCeEEEEEcCccc----cccccccceEEEEeeCChh
Q 017967          284 SSVRLFATRGMELLVAQSYSKN----LGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       284 ~~~~~~~~~~~~vi~~~S~SK~----~~l~G~RvG~i~~v~~~~~  324 (363)
                       + .   ..+.+++ +.| +|.    +++.|.|+||+  +++ ++
T Consensus       243 -~-~---~~g~D~~-~~s-~kk~~~~~~~~Gp~~G~l--~~~-~~  277 (438)
T 1wyu_A          243 -P-G---AYGADIA-VGD-GQSLGLPMGFGGPHFGFL--ATK-KA  277 (438)
T ss_dssp             -H-H---HHTCSEE-EEE-CTTTTCCCGGGCSCCEEE--EEC-GG
T ss_pred             -C-c---cCCCCEE-EEC-CcccCCCccCCCCCeeEE--EEc-HH
Confidence             1 1   1223444 444 554    45678899999  665 44

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.48  E-value=7.9e-14  Score=137.10  Aligned_cols=249  Identities=11%  Similarity=-0.029  Sum_probs=148.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc---CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER---GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      .+||+..|.+...-|+  -.+.+.+++.+....   .....|+. ....++++++++.+......  ..++|++  ++||
T Consensus        64 ~ylD~~~g~~~~~lGh--~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~--~~~~v~f--~~sG  136 (472)
T 1ohv_A           64 RMLDLYSQISSIPIGY--SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPK--GMSQLIT--MACG  136 (472)
T ss_dssp             EEEESSHHHHTCSSCB--TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCT--TCCEEEE--ESSH
T ss_pred             EEEECCCCHhhcccCC--CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCC--CcCEEEE--eCCc
Confidence            7999988876433343  355666666543311   01112322 33568999999866553322  3578888  9999


Q ss_pred             hHHHHHHHHHHHHh------C-----------------CC---CEEEEcCCCCcchHHHH-hhCCC--------Ce----
Q 017967          161 TGSLRLAAALIERY------F-----------------PG---AKVLISSPTWGNHKNIF-NDARV--------PW----  201 (363)
Q Consensus       161 t~al~l~~~l~~~~------~-----------------~g---d~Vlv~~P~y~~~~~~~-~~~G~--------~~----  201 (363)
                      ++|++.+..+....      .                 ||   +.|++.+++|.++.... ...|.        ..    
T Consensus       137 seA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~  216 (472)
T 1ohv_A          137 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWP  216 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCC
T ss_pred             hhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCc
Confidence            99999986654311      1                 46   89999999998875543 22222        11    


Q ss_pred             -EEEecccCC---C--C-----CCCHHHHHHHHHcCCC---CcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEE
Q 017967          202 -SEYRYYDPK---T--V-----GLDFEGMIADIKAAPG---GSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPF  266 (363)
Q Consensus       202 -~~v~~~~~~---~--~-----~~d~~~l~~~l~~~~~---~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii  266 (363)
                       +.+|.+...   .  +     ..|++.|++.+++...   +++++++...+|+||. ..+.+.+++|.++|+++|+++|
T Consensus       217 ~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli  296 (472)
T 1ohv_A          217 IAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFL  296 (472)
T ss_dssp             EECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence             122211000   0  0     1267889888874211   4667776666888996 5689999999999999999999


Q ss_pred             EecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCch
Q 017967          267 FDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPP  346 (363)
Q Consensus       267 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~  346 (363)
                      +||+|.+|...+.   ...+..+ ... ...-+.+|||.+ +.|   ||+  + + ++    +. .+.........+.++
T Consensus       297 ~DEv~~g~g~~g~---~~~~~~~-gv~-~~~Di~t~sK~~-l~G---G~~--~-~-~~----~~-~~~~~~~~~T~~~~~  358 (472)
T 1ohv_A          297 VDEVQTGGGSTGK---FWAHEHW-GLD-DPADVMTFSKKM-MTG---GFF--H-K-EE----FR-PNAPYRIFNTWLGDP  358 (472)
T ss_dssp             EECTTTTTTTTSS---SSGGGGG-CCS-SCCSEEEECGGG-SSE---EEE--E-C-GG----GS-CSSSSSSCCSSSSCH
T ss_pred             EeCcccCCCCCCC---chhcccc-CCC-CCCCEEEEcccc-ccC---Ccc--C-c-hh----hc-ccccccccCccCccH
Confidence            9999988765421   1122111 110 002234899995 345   777  4 3 44    21 122222233346678


Q ss_pred             HHHHHHhcccc
Q 017967          347 MLLGIQLSSMN  357 (363)
Q Consensus       347 ~~q~~~~~~l~  357 (363)
                      ++|.++...|+
T Consensus       359 ~~~aaa~aal~  369 (472)
T 1ohv_A          359 SKNLLLAEVIN  369 (472)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887765554

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.45  E-value=1.1e-12  Score=128.90  Aligned_cols=206  Identities=9%  Similarity=-0.112  Sum_probs=143.4

Q ss_pred             cHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC-------CcEEEEeccchhHHHHHHHHHHHHh-
Q 017967          103 LDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE-------QRVATVQGLSGTGSLRLAAALIERY-  174 (363)
Q Consensus       103 ~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~-------~~i~~~~t~ggt~al~l~~~l~~~~-  174 (363)
                      +..+.+.+........ ..|....+..++++.+++++.+..|.+.+.       ...++  |.|||+|..++....+.. 
T Consensus        87 ~~~~~~~l~~~~n~~~-~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~--t~ggt~anl~al~~ar~~~  163 (475)
T 3k40_A           87 PAIVADMLSGAIACIG-FTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVI--QGTASESTLVALLGAKAKK  163 (475)
T ss_dssp             HHHHHHHHHHHHCCCS-SSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEE--ESCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccc-cCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEE--cCchHHHHHHHHHHHHHHH
Confidence            3455555555554433 668788899999999999987766654321       24555  899999976663322111 


Q ss_pred             ----------------CCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC---CCcEEEEE
Q 017967          175 ----------------FPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP---GGSFILLH  235 (363)
Q Consensus       175 ----------------~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~i  235 (363)
                                      .+++.|+++.+.|..+...++..|++++.+|++  +++ +|++.|++++++..   ..++++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~  240 (475)
T 3k40_A          164 LKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVV  240 (475)
T ss_dssp             HHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEE
Confidence                            134689999999999999999999999999984  356 99999999997521   12567777


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhc-CCeEEEEEcCccccccccccce
Q 017967          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATR-GMELLVAQSYSKNLGLYAERIG  314 (363)
Q Consensus       236 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~l~G~RvG  314 (363)
                      +.++|+||.+-   ++++|+++|+++|+++++|++|........  ....   .... ..-..+..+++|.++.| ..+|
T Consensus       241 ~~~~t~~G~~~---~l~~I~~la~~~~~~lhvD~A~~~~~~~~~--~~~~---~~~gi~~~Ds~~~~~hK~l~~p-~g~g  311 (475)
T 3k40_A          241 TLGTTNSCAFD---YLDECGPVGNKHNLWIHVDAAYAGSAFICP--EYRH---LMKGIESADSFNFNPHKWMLVN-FDCS  311 (475)
T ss_dssp             EBSCTTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGSG--GGGG---GGTTGGGCSEEEECHHHHSSCC-SSCE
T ss_pred             EecCCCCcCcC---CHHHHHHHHHHhCCeEEEeHHhHHHHHhCH--hhHH---HhcCcccCCEEEECchhccCCC-CceE
Confidence            88999999974   567788889999999999999977543211  1111   1110 01235678899988743 5678


Q ss_pred             EEEEeeCChhH
Q 017967          315 AMNVVCSSSDL  325 (363)
Q Consensus       315 ~i~~v~~~~~~  325 (363)
                      ++  +..++..
T Consensus       312 ~l--~~~~~~~  320 (475)
T 3k40_A          312 AM--WLKDPSW  320 (475)
T ss_dssp             EE--EESSGGG
T ss_pred             EE--EEeCHHH
Confidence            88  6666653

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.06  E-value=1.8e-09  Score=103.62  Aligned_cols=172  Identities=12%  Similarity=0.034  Sum_probs=112.5

Q ss_pred             HHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC---CC-CEEEEcCCCCcchHHHHhhCCCCeEEEec-ccCCC
Q 017967          137 ELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF---PG-AKVLISSPTWGNHKNIFNDARVPWSEYRY-YDPKT  211 (363)
Q Consensus       137 ~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~---~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~~~~~  211 (363)
                      +|+... |.+-. ...++  ++|+|+++..+  ++..++   || |+|+++.-++......+...|++++.++. .+++.
T Consensus       124 d~L~~~-G~~~~-~~~fl--VnGsTgg~lam--ilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~  197 (501)
T 3hl2_A          124 DIIKLA-GVHTV-ANCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDE  197 (501)
T ss_dssp             HHHHHT-TCTTC-CEEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTE
T ss_pred             HHHHHc-CCCCC-CcEEE--ECcHHHHHHHH--HHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccc
Confidence            454443 55422 23444  79999775554  444554   34 99999999999999999999999998853 33446


Q ss_pred             CCCCHHHHHHHHHcCCCCcEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH
Q 017967          212 VGLDFEGMIADIKAAPGGSFILLHG-CAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (363)
Q Consensus       212 ~~~d~~~l~~~l~~~~~~~~~~~i~-~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  290 (363)
                      .++|++.+++++++.+...+++++. .+.|-.|.+   +++++|+++|++||+++++||+|.......    ..-..+..
T Consensus       198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~---ddI~eIaeIch~~gIpllVDeAhGah~~~~----~~lp~sA~  270 (501)
T 3hl2_A          198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVP---DRLEELAVICANYDIPHIVNNAYGVQSSKC----MHLIQQGA  270 (501)
T ss_dssp             EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTCTTCHHH----HHHHHHHH
T ss_pred             cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccc---ccHHHHHHHHHHcCCeEEEeCcchhhhhhh----hhhHHHHH
Confidence            8899999999998754234444433 344422332   478888999999999999999998764210    11112233


Q ss_pred             hcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       291 ~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      ..+.-.+++.|.-|.+-++ .. |++ +...+++
T Consensus       271 ~~GrAD~vVqS~HK~llvp-IG-G~i-i~~~d~e  301 (501)
T 3hl2_A          271 RVGRIDAFVQSLDKNFMVP-VG-GAI-IAGFNDS  301 (501)
T ss_dssp             HHSCCCEEEEEHHHHHCCC-SS-CEE-EEESCHH
T ss_pred             hcCCCcEEEecccccceee-cC-ceE-EEeCCHH
Confidence            4432445788999998655 11 334 2456676

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=98.99  E-value=2.7e-09  Score=103.08  Aligned_cols=183  Identities=10%  Similarity=-0.051  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC----CCCEEEEcCCCCcchHHHHhhCCCCeEEE
Q 017967          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF----PGAKVLISSPTWGNHKNIFNDARVPWSEY  204 (363)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~----~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v  204 (363)
                      ..+.+.+..++....|.+- ....++  ++|+|++...+  ++..++    +|+.|+++.-++......+...|+.++.+
T Consensus        97 ~~~e~~~~~~~~~~lGlp~-~~~~~l--V~GaT~~~~a~--~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v  171 (450)
T 3bc8_A           97 NKITNSLVLNVIKLAGVHS-VASCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVI  171 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCTT-CCEEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCC-CceEEE--ECCHHHHHHHH--HHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEE
Confidence            3444445444433333321 122334  78888555544  233333    38999999999999999999999998888


Q ss_pred             ec-ccCCCCCCCHHHHHHHHHcCC-CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCc
Q 017967          205 RY-YDPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDND  282 (363)
Q Consensus       205 ~~-~~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~  282 (363)
                      +. .+++.+++|++.+++++.+.+ +.+.+++.+...|.+|.+   +++++|+++|++||+++++|++|......    .
T Consensus       172 ~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~---ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~----~  244 (450)
T 3bc8_A          172 ENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVP---DRLEELAVICANYDIPHVVNNAYGLQSSK----C  244 (450)
T ss_dssp             CCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHH----H
T ss_pred             EeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCcee---cCHHHHHHHHHHCCCeEEEECCCchhhhh----h
Confidence            53 223468899999999998754 233334333334444544   56788888999999999999999875321    0


Q ss_pred             hhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHH
Q 017967          283 ASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLA  326 (363)
Q Consensus       283 ~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~  326 (363)
                      ..-.+...+...-..++.|..|.+.. -.--+++  ...+++.+
T Consensus       245 ~~l~~~a~~~~~AD~~v~S~HK~l~a-~~~~~~l--~~rd~~~~  285 (450)
T 3bc8_A          245 MHLIQQGARVGRIDAFVQSLDKNFMV-PVGGAII--AGFNEPFI  285 (450)
T ss_dssp             HHHHHHHHHHSCCCEEEEEHHHHHSC-CSSCEEE--EESCHHHH
T ss_pred             HhHHHHHhcccCCCEEEECCccCCCc-hhccEEE--EecCHHHH
Confidence            01111222221223467889998864 3334555  44567643

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=98.99  E-value=5.7e-09  Score=101.46  Aligned_cols=214  Identities=14%  Similarity=0.070  Sum_probs=132.8

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      +.+++ .+||+..|.-...-|+  -.|.|.+++.+.+...... ..+..-..++.+.+++.+-.       .+.+.+  +
T Consensus        83 D~dG~-~ylD~~~g~~~~~lGH--~hp~v~~Av~~q~~~~~~~-~~~~~~~~~lae~l~~~~p~-------~~~v~f--~  149 (454)
T 4ao9_A           83 DADGH-RYADFIAEYTAGVYGH--SAPEIRDAVIEAMQGGINL-TGHNLLEGRLARLICERFPQ-------IEQLRF--T  149 (454)
T ss_dssp             ETTCC-EEEESSGGGGTTTTCS--CCHHHHHHHHHHHHTCSCC-CSEESSHHHHHHHHHHHSTT-------CSEEEE--E
T ss_pred             ECCCC-EEEEccccHHhhcccC--CCHHHHHHHHHHHhcCCCc-cCCcHHHHHHHHHHHHhCCC-------CCEEEE--e
Confidence            44554 7899876643222332  3466777766655443212 22333456777777777422       378877  9


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCC--CeEEEecccCCCCCCCHHHHHHHHHcCCCCcE
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARV--PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                      ++|++|.+.+..+...+...++|+...-+|.+....+.    ..++  ....+|+       -|++.+++.+.+..+...
T Consensus       150 ~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~~iA  222 (454)
T 4ao9_A          150 NSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERHGPEIA  222 (454)
T ss_dssp             SSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHTGGGEE
T ss_pred             CchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhcCCceE
Confidence            99999999987665555445788888888866432211    1111  1222232       378999999887555555


Q ss_pred             EEEEcCCCCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccccc
Q 017967          232 ILLHGCAHNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYA  310 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G  310 (363)
                      .+++-.-+.-.|.+. +++-+++|.++|++||+++|.||+..+ ..+.    ...... ..-.++++   .|+|.+| .|
T Consensus       223 avIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G~----~~a~e~-~gv~PDi~---t~gK~lg-gG  292 (454)
T 4ao9_A          223 VVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLAP----HGLANK-LGIRSDLT---TLGKYIG-GG  292 (454)
T ss_dssp             EEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGST----TCHHHH-HTCCCSEE---EEEGGGG-TT
T ss_pred             EEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCcc----ccchhc-cCCCCcEE---EeccccC-CC
Confidence            555544455567654 567789999999999999999999764 2221    112222 23234444   5789998 78


Q ss_pred             ccceEEEEeeCChh
Q 017967          311 ERIGAMNVVCSSSD  324 (363)
Q Consensus       311 ~RvG~i~~v~~~~~  324 (363)
                      +-+|.+  ++. ++
T Consensus       293 ~Piga~--~~~-~e  303 (454)
T 4ao9_A          293 MSFGAF--GGR-AD  303 (454)
T ss_dssp             SSCEEE--EEC-HH
T ss_pred             Ccceee--eeH-HH
Confidence            999998  554 66

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=98.87  E-value=1.3e-09  Score=104.06  Aligned_cols=188  Identities=11%  Similarity=-0.059  Sum_probs=116.0

Q ss_pred             CCCCCccccHHHHHHHHHHHcc-----CC---CCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHH
Q 017967           95 TEELQPYVLDVVKKAENLMLER-----GE---NKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (363)
Q Consensus        95 ~~~~~~~~~~~v~~a~~~~~~~-----~~---~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al  164 (363)
                      +..++..+++.|.+++......     ..   .....+  ..-..+.|+.+++++...     ++++|++ .|.|||+++
T Consensus        31 ~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~-----~~~evif-~t~~~T~a~  104 (386)
T 3qm2_A           31 FSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIP-----SNYKVLF-CHGGGRGQF  104 (386)
T ss_dssp             CCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCC-----TTEEEEE-EESCTTHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-----CCceEEE-EcCCchHHH
Confidence            4456677888888887543311     00   001111  335678999999998542     1245654 258999999


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCcc--hHHHHhhCCCCeEEEecc-cCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          165 RLAAALIERYFPGAKVLISSPTWGN--HKNIFNDARVPWSEYRYY-DPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       165 ~l~~~l~~~~~~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      +++  +..++.+||+|++..-+...  +...+++.| ++..++.+ .+++..++++.++++++   ++++++.+++..|.
T Consensus       105 n~a--i~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~---~~t~lV~~~h~et~  178 (386)
T 3qm2_A          105 AGV--PLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS---DNAAYLHYCPNETI  178 (386)
T ss_dssp             HHH--HHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC---TTCSCEEECSEETT
T ss_pred             HHH--HHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC---CCCcEEEEECCcCC
Confidence            998  56667899998655443333  233456788 88888874 11222267777776665   34556777777888


Q ss_pred             CCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          242 TGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       242 TG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      ||+. .+.+++.        +|+++++|.+ +.+...+.  +   +    +.. ++ .+.|--|.+|.+|  +|++
T Consensus       179 tG~~i~pi~~i~--------~g~~~~vDa~-qs~g~~pi--d---v----~~~-~~-~~~s~hK~lGP~G--~g~l  232 (386)
T 3qm2_A          179 DGIAIDETPDFG--------PEVVVTADFS-STILSAPL--D---V----SRY-GV-IYAGAQKNIGPAG--LTLV  232 (386)
T ss_dssp             TTEECCCCCCCC--------TTCCEEEECT-TTTTSSCC--C---G----GGC-SE-EEEETTTTTCCTT--EEEE
T ss_pred             cCEecCchhhhc--------CCCEEEEEcc-cccCCCCC--C---c----ccc-CE-EEEecccccCCCc--cEEE
Confidence            8996 6555442        7999999999 44443221  1   1    122 23 5688899999777  5887

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.80  E-value=1.7e-08  Score=95.40  Aligned_cols=195  Identities=10%  Similarity=-0.040  Sum_probs=117.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC----C-CC--CC-CC--CcchHHHHHHHHHHHhcCCCCcccCCcEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG----E-NK--EY-LP--IEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~----~-~~--~Y-~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~  153 (363)
                      ++++|+.       ++..+++.|.+++.+.+...    . .+  .+ .+  ..-..+.|+.+++++....     +.+|+
T Consensus         5 ~~~~f~p-------gpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~-----~~~v~   72 (361)
T 3m5u_A            5 RKINFSA-------GPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELND-----DYEVL   72 (361)
T ss_dssp             CCEECCS-------SSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCT-----TEEEE
T ss_pred             ceEeecC-------CCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCC-----CceEE
Confidence            4566764       34667888888887754210    0 00  11 11  1235677888888875421     23553


Q ss_pred             EEeccchhHHHHHHHHHHHHhCCCCEEE-EcCCCCc-chHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcE
Q 017967          154 TVQGLSGTGSLRLAAALIERYFPGAKVL-ISSPTWG-NHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       154 ~~~t~ggt~al~l~~~l~~~~~~gd~Vl-v~~P~y~-~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                      + .|.|||++++++  +..++ +||+++ +..-.|. .+...++..|+++..++.+....+..+++. +  ++   ++++
T Consensus        73 f-~t~~~T~a~n~~--~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~---~~t~  142 (361)
T 3m5u_A           73 F-LQGGASLQFAMI--PMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FS---DNAD  142 (361)
T ss_dssp             E-ESSHHHHHHHHH--HHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CC---TTSS
T ss_pred             E-EcCcHHHHHHHH--HHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cC---CCCC
Confidence            2 489999999998  55666 888653 2222332 223455678999999998432111145555 3  54   3456


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccc
Q 017967          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~  311 (363)
                      ++.+++..|.||+.++.     |   ++ +|+++++|.+ +.+...+.+  .       +  .--+++.|--|.+|.+| 
T Consensus       143 lv~~~~~e~~tG~~~~~-----i---~~-~~~~~~vD~~-q~~g~~~id--~-------~--~~d~~~~s~~K~~gp~G-  200 (361)
T 3m5u_A          143 YAYICSNNTIYGTQYQN-----Y---PK-TKTPLIVDAS-SDFFSRKVD--F-------S--NIALFYGGVQKNAGISG-  200 (361)
T ss_dssp             EEEEESEETTTTEECSS-----C---CC-CSSCEEEECG-GGTTSSCCC--C-------T--TEEEEEEETTTTSSCTT-
T ss_pred             EEEEeCCCCCcceeCCc-----c---cc-cCCEEEEEcc-cccCCCCCC--c-------c--cCCEEEEechhccCCCc-
Confidence            67778878888998762     2   33 4999999998 444332211  1       1  12367788899999777 


Q ss_pred             cceEEEEeeCChhHH
Q 017967          312 RIGAMNVVCSSSDLA  326 (363)
Q Consensus       312 RvG~i~~v~~~~~~~  326 (363)
                       +|++  +.. ++..
T Consensus       201 -~g~l--~~~-~~~~  211 (361)
T 3m5u_A          201 -LSCI--FIR-KDML  211 (361)
T ss_dssp             -CEEE--EEE-HHHH
T ss_pred             -cEEE--EEc-HHHH
Confidence             5888  544 5533

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=98.73  E-value=9.4e-09  Score=97.71  Aligned_cols=185  Identities=11%  Similarity=-0.024  Sum_probs=118.1

Q ss_pred             CCCccccHHHHHHHHHHHccC-----CC---CCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHH
Q 017967           97 ELQPYVLDVVKKAENLMLERG-----EN---KEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRL  166 (363)
Q Consensus        97 ~~~~~~~~~v~~a~~~~~~~~-----~~---~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l  166 (363)
                      .+...+++.|.+++.+.....     ..   ....+  ..-..+.|+.+++++...     ++.+|++ .|.|||+++++
T Consensus        19 at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~-----~~~evif-~t~~~T~a~n~   92 (377)
T 3e77_A           19 YFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVP-----DNYKVIF-LQGGGCGQFSA   92 (377)
T ss_dssp             ECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCC-----TTEEEEE-ESSHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-----CCCeEEE-EcCchHHHHHH
Confidence            345567888888887765210     00   01111  123467788888887542     1245654 24799999999


Q ss_pred             HHHHHHHhCC--CCEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          167 AAALIERYFP--GAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       167 ~~~l~~~~~~--gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      +  +..++.+  ||+|++..-++...  ...+++.|..++.++.+  ++++.+++.++..++   ++++++.+++..|.|
T Consensus        93 a--~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~--~~~~~~~~~~~~~i~---~~t~lV~~~h~et~t  165 (377)
T 3e77_A           93 V--PLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKL--GSYTKIPDPSTWNLN---PDASYVYYCANETVH  165 (377)
T ss_dssp             H--HHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCC--SSSCSCCCGGGCCCC---TTCSCEEEESEETTT
T ss_pred             H--HHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccC--CCcCCCCChHHhccC---CCccEEEEeCccCch
Confidence            8  5566654  99988777655333  34556788877777762  345667777655444   345566677778888


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      |+.++.        +|+++|+++++|.+ +.+...+.+     +    +..+ + ++.|--|.+|.+|  +|++
T Consensus       166 G~~~pi--------i~~~~~~~~~vD~~-q~~g~~~id-----~----~~~~-~-~~~s~~K~~gp~G--~g~l  217 (377)
T 3e77_A          166 GVEFDF--------IPDVKGAVLVCDMS-SNFLSKPVD-----V----SKFG-V-IFAGAQKNVGSAG--VTVV  217 (377)
T ss_dssp             TEECSS--------CCCCTTCCEEEECT-TTTTSSCCC-----G----GGCS-E-EEEEGGGTTSCTT--CEEE
T ss_pred             heEchh--------hhccCCCEEEEEcc-cccCCCCCc-----h----hhcC-E-EEEecccccCCCc--cEEE
Confidence            999986        36788999999999 444432211     1    1212 3 6678899999888  5777

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=98.50  E-value=1.6e-06  Score=84.39  Aligned_cols=255  Identities=14%  Similarity=0.056  Sum_probs=138.4

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CC-CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-EN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~-~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+++ .+||+..|.-...-|+  -.+.+.+++.+....- +. ..+.+.....+|-+.+++..-..     ..+++.+ 
T Consensus        60 D~dG~-~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-----~~~~v~f-  130 (456)
T 4atq_A           60 DVDGN-SFIDLGSGIAVTSVGA--SDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGD-----HAKRTVL-  130 (456)
T ss_dssp             ETTSC-EEEESSHHHHTCTTCT--TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCS-----SCEEEEE-
T ss_pred             eCCCC-EEEEccccHHHHhcCC--CCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCC-----CCcEEEE-
Confidence            44544 7888877742222232  2455666655544321 11 12223444456666666653111     1246766 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHH-HHhhC-------------CCCeEEEecccC----CCCCCCHH
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKN-IFNDA-------------RVPWSEYRYYDP----KTVGLDFE  217 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~-~~~~~-------------G~~~~~v~~~~~----~~~~~d~~  217 (363)
                       +++|++|.+.+..+........+|+...-+|.+... .+...             ...+..+|....    .....+.+
T Consensus       131 -~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~  209 (456)
T 4atq_A          131 -FNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAE  209 (456)
T ss_dssp             -ESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHH
T ss_pred             -eCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHH
Confidence             899999999997766555555789988888866532 22111             113444443111    11112233


Q ss_pred             HHHHHHHc-----CCCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh
Q 017967          218 GMIADIKA-----APGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT  291 (363)
Q Consensus       218 ~l~~~l~~-----~~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  291 (363)
                      .+++.+..     .++....+++-.-+.-.|.. .+++-+++|.++|++||+++|.||+..+|.-.+.   .+....+ .
T Consensus       210 ~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~---~~a~e~~-g  285 (456)
T 4atq_A          210 AAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE---WFAVDHE-G  285 (456)
T ss_dssp             HHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGT-T
T ss_pred             HHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc---ccccccc-C
Confidence            33333321     22334455543334445654 5567899999999999999999999988743321   2222111 2


Q ss_pred             cCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       292 ~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      -.++++   .|+|.+| .|+-+|.+  ++. ++    +.+.+........++-++++..++...|+
T Consensus       286 v~PDiv---t~gK~lg-gg~P~~av--~~~-~~----i~~~~~~~~~~~Tf~gnpla~aaala~L~  340 (456)
T 4atq_A          286 VVPDII---TMAKGIA-GGLPLSAI--TGR-AD----LLDAVHPGGLGGTYGGNPVACAAALAAID  340 (456)
T ss_dssp             CCCSEE---EECGGGG-TTSSCEEE--EEE-HH----HHTTSCTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred             CCCchh---hhhhccc-CcCCceee--Eec-HH----HHhcccccCCCCCCCCChHHHHhhHHHHH
Confidence            224443   4579998 89999998  655 55    44444333223344555666555544443

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=98.45  E-value=6.8e-06  Score=85.70  Aligned_cols=125  Identities=10%  Similarity=0.110  Sum_probs=78.0

Q ss_pred             HHHHHHHHc-----CCCCcEEEEEcCC--CCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH
Q 017967          217 EGMIADIKA-----APGGSFILLHGCA--HNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (363)
Q Consensus       217 ~~l~~~l~~-----~~~~~~~~~i~~p--~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  288 (363)
                      +.+++.+.+     .+++...++ ..|  ++..|... +++.+++|.++|++||+++|+||++.+|...+.   ......
T Consensus       577 ~~le~~l~~~~~~~~~~~iaavi-~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~---~fa~e~  652 (831)
T 4a0g_A          577 AYLSKHLQEHSGVRQSAHVGALI-IEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV---ETTTEL  652 (831)
T ss_dssp             HHHHHHC---------CEEEEEE-ECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB---SSTHHH
T ss_pred             HHHHHHHHhhhhhcCCCcEEEEE-EecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC---chhhHh
Confidence            456666642     223344444 455  78888765 778899999999999999999999999855431   222222


Q ss_pred             HHhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhh------ccccCCCchHHHHHHhcccc
Q 017967          289 FATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLA------RPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       289 ~~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~------~~~~~~~s~~~q~~~~~~l~  357 (363)
                      + .-.++++   +|+|.++ .| +++|++  +++ ++    +.+.+....      ....++.+++++.++...|+
T Consensus       653 ~-gv~PDii---tlsK~L~-gG~~Plgav--~~~-~~----i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~  716 (831)
T 4a0g_A          653 L-GCKPDIA---CFAKLLT-GGMVPLAVT--LAT-DA----VFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQ  716 (831)
T ss_dssp             H-SSCCSEE---EECGGGG-TTSSCCEEE--EEC-HH----HHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHH
T ss_pred             c-CCCCcEE---EEecccc-cCccCcEEE--EEC-HH----HHHHHhcccccccceeecCCcccHHHHHHHHHHHH
Confidence            2 3334443   6999998 57 799999  765 66    444443211      12334556676666655444

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=98.19  E-value=0.00011  Score=71.83  Aligned_cols=253  Identities=13%  Similarity=0.116  Sum_probs=132.6

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      .+||+..|.-...-|+  -.+.+.+++.+.+..- ....+..  ..-..+|-+.+++..-      ..-++|.+  +++|
T Consensus        68 ~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p------~~~~~v~f--~~sG  137 (473)
T 4e3q_A           68 RYLDANSGLWNMVAGF--DHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSP------FDSGRVFY--TNSG  137 (473)
T ss_dssp             EEEETTTTTTTCTTCS--CCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSS------CSSCEEEE--ESSH
T ss_pred             EEEEcccCHHHhhccC--CCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCC------CCccEEEE--eCch
Confidence            6888876653222232  2456666665544331 1111111  1112234444444421      12368888  9999


Q ss_pred             hHHHHHHHHHHHHh-----CCC-CEEEEcCCCCcchHH-HHhhCC--------C---CeEEEeccc---CCCCCCC----
Q 017967          161 TGSLRLAAALIERY-----FPG-AKVLISSPTWGNHKN-IFNDAR--------V---PWSEYRYYD---PKTVGLD----  215 (363)
Q Consensus       161 t~al~l~~~l~~~~-----~~g-d~Vlv~~P~y~~~~~-~~~~~G--------~---~~~~v~~~~---~~~~~~d----  215 (363)
                      ++|.+.+..+...+     .++ .+|+...-+|.+... .+...|        .   ....++...   ....+-.    
T Consensus       138 sEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  217 (473)
T 4e3q_A          138 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQF  217 (473)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHH
Confidence            99999987665433     133 568888878865422 221111        1   122232100   0011111    


Q ss_pred             ----HHHHHHHHHcC-CCCcEEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHH
Q 017967          216 ----FEGMIADIKAA-PGGSFILLHGCAHNPTGID-PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF  289 (363)
Q Consensus       216 ----~~~l~~~l~~~-~~~~~~~~i~~p~NPTG~~-~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  289 (363)
                          .+++++.+... ++....+++-.-+.-.|.. .+++-+++|.++|+++|+++|.||+..+|.-.+   ..+....+
T Consensus       218 ~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG---~~fa~e~~  294 (473)
T 4e3q_A          218 VARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG---NTWGCVTY  294 (473)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTS---SSCHHHHT
T ss_pred             HHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCccc---chhHHHhc
Confidence                23455555432 2334455544445555654 456789999999999999999999999984332   12233222


Q ss_pred             HhcCCeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhh---ccccCCCchHHHHHHhcccc
Q 017967          290 ATRGMELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLA---RPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       290 ~~~~~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~~~~~l~  357 (363)
                       .-.++++   .++|.++ .| +-+|.+  ++. ++..+.+........   -...++-++++..++...|+
T Consensus       295 -gv~PDi~---t~~K~l~-gG~~Pl~av--~~~-~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~  358 (473)
T 4e3q_A          295 -DFTPDAI---ISSKNLT-AGFFPMGAV--ILG-PELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAID  358 (473)
T ss_dssp             -TCCCSEE---EECGGGG-TTSSCCEEE--EEC-HHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHH
T ss_pred             -CCCCChH---Hhccccc-CCCCCcccc--ccc-HHHHHHhccccccccccccCCCCCCCcchhhhhhhhhh
Confidence             3334544   4689998 56 899999  665 775444443333221   12233445555555544433

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.05  E-value=2.6e-05  Score=74.71  Aligned_cols=209  Identities=15%  Similarity=0.149  Sum_probs=112.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC------CcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      ..|+|=.-++       +..+.|.++....+......+|+.      ..-..++.....+.....++..+..+.| =+|.
T Consensus        55 ~~ieLIASEN-------~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~V-NVQP  126 (490)
T 3ou5_A           55 RGLELIASEN-------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGV-NVQP  126 (490)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEE-ECCC
T ss_pred             cCceEecCCC-------cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCC-CCCc
Confidence            5678765443       357788888766664333333321      1112222222222222223332222222 1356


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--------HhhCCC--CeEEEecccCCCCCCCHHHHHHHHHcCC
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI--------FNDARV--PWSEYRYYDPKTVGLDFEGMIADIKAAP  227 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~--------~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~  227 (363)
                      .+|+.|...+  +++++.|||+|+..+....++...        +...|.  +.+.|+++ ++++.+|.|.+++...+. 
T Consensus       127 ~SGs~AN~av--y~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd-~~t~~IDyd~~~~~A~~~-  202 (490)
T 3ou5_A          127 YSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALTARLF-  202 (490)
T ss_dssp             SSHHHHHHHH--HHHHCC-CCCEECBC----------------------------CBCEE-TTTTEECHHHHHHHHHHH-
T ss_pred             CCHHHHHHHH--HHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccC-CCCCcccHHHHHHHHhhc-
Confidence            8888886666  778889999999999887776432        112232  45556664 456789999999988763 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCC-CCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc
Q 017967          228 GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL  306 (363)
Q Consensus       228 ~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  306 (363)
                       ++++++..--.+|-  .++   ++++.++|.+.|.++++|.+. .++.-++.-+++  +    +.  --++..|..|+|
T Consensus       203 -kPklIi~G~SaY~r--~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP--~----~~--ADvVTtTTHKTL  268 (490)
T 3ou5_A          203 -RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSP--F----KH--ADIVTTTTHKTL  268 (490)
T ss_dssp             -CCSEEEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--G----GT--CSEEEEESSSTT
T ss_pred             -CCCeEEECCccCcc--ccC---HHHHHHHHhhcccEEEechhhhhhhhcccccCCc--c----cc--ceEEeccccccc
Confidence             45577766655554  233   455556688899999999995 233322221111  1    11  236688889998


Q ss_pred             ccccccceEEEEeeCC
Q 017967          307 GLYAERIGAMNVVCSS  322 (363)
Q Consensus       307 ~l~G~RvG~i~~v~~~  322 (363)
                        .|=|-|.|  .+.+
T Consensus       269 --rGPrGG~I--l~~~  280 (490)
T 3ou5_A          269 --RGARSGLI--FYRK  280 (490)
T ss_dssp             --CSCSCEEE--EEEC
T ss_pred             --cCCCceEE--Eecc
Confidence              59999998  6543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	363
d1ajsa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig	1e-72
d7aata_	401	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi	4e-69
d3tata_	397	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-67
d2q7wa1	396	c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT	5e-65
d1yaaa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak	7e-63
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	2e-62
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	2e-14
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	3e-13
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	4e-13
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	7e-07
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	5e-05
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	0.004

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

 Score =  229 bits (585), Expect = 1e-72
 Identities = 138/298 (46%), Positives = 185/298 (62%), Gaps = 7/298 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE- 115
           S F  V  A P  +  +   F+ D D +K+NLGVGAYRT++ QP+VL VV+K E  +   
Sbjct: 4   SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYLPI GLA F    + L  G D+  L+E+RV  VQ L GTG+LR+ A  + R++
Sbjct: 64  SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123

Query: 176 -----PGAKVLISSPTWGNHKNIFNDA-RVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG 229
                    V +SSPTW NH  +F  A       YRY+D +  GLD +G ++D++ AP  
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183

Query: 230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLF 289
           S  +LH CAHNPTG DPTPEQW++IA V++ +   PFFD AYQGFASG+L+ DA ++R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243

Query: 290 ATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPM 347
            + G EL  AQS+SKN GLY ER+G + VV    D   RV SQ++++ R  +SNPP  
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQ 301

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

 Score =  220 bits (560), Expect = 4e-69
 Identities = 155/292 (53%), Positives = 208/292 (71%), Gaps = 1/292 (0%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER 116
           S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL+ V+KAE ++  +
Sbjct: 2   SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61

Query: 117 GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF- 175
             +KEYLPI GLA F + +AEL  G ++   K  R  TVQG+SGTGSLR+ A  ++R+F 
Sbjct: 62  KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK 121

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
               V +  P+WGNH  IF DA +    YRYYDPKT  LDF G + DI   P  S ILLH
Sbjct: 122 FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGME 295
            CAHNPTG+DP  EQW+++A V++++N + +FD+AYQGFASG ++ DA ++R F  +G++
Sbjct: 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241

Query: 296 LLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPM 347
           ++++QSY+KN+GLY ER GA  V+C  ++ A RV+SQLK L RPMYSNPP  
Sbjct: 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMN 293

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

 Score =  216 bits (551), Expect = 1e-67
 Identities = 125/306 (40%), Positives = 180/306 (58%), Gaps = 2/306 (0%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAE-NLMLERG 117
           F+ V     DPIL + E FK D    K+NL +G Y  E+     L  V +AE  L  +  
Sbjct: 2   FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61

Query: 118 ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG 177
               YLP+EGL  +    A LLFGAD+ VLK+QRVAT+Q L G+G+L++ A  ++RYFP 
Sbjct: 62  GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121

Query: 178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC 237
           + V +S PTW NH  IF  A    S Y +YD  T G+ F  ++A +K  P  S +LLH C
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPC 181

Query: 238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL 297
            HNPTG D T +QW+ + ++++ +  IPF D+AYQGF +G ++ DA ++R  A+ G+  L
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAG-MEEDAYAIRAIASAGLPAL 240

Query: 298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN 357
           V+ S+SK   LY ER+G ++V+C  ++ A RV  QLK   R  YS+PP     +  + +N
Sbjct: 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN 300

Query: 358 GKQRWR 363
            +    
Sbjct: 301 DEALKA 306

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

 Score =  209 bits (532), Expect = 5e-65
 Identities = 135/289 (46%), Positives = 182/289 (62%), Gaps = 1/289 (0%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
           FE +T AP DPILG+++ F+AD    K+NLG+G Y+ E  +  VL  VKKAE  +LE   
Sbjct: 2   FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K YL I+G+  F + T ELLFG  ++++ ++R  T Q   GTG+LR+AA  + +     
Sbjct: 62  TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S+P+W NHK++FN A +   EY YYD +   LDF+ +I  +  A  G  +L HGC 
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTGIDPT EQW+ +A +  EK  +P FD AYQGFA G L+ DA  +R FA    EL+V
Sbjct: 182 HNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARG-LEEDAEGLRAFAAMHKELIV 240

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPM 347
           A SYSKN GLY ER+GA  +V + S+   R  SQ+K   R  YSNPP  
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAH 289

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

 Score =  204 bits (519), Expect = 7e-63
 Identities = 123/299 (41%), Positives = 175/299 (58%), Gaps = 8/299 (2%)

Query: 57  SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-E 115
           + F  + + PPD + G+ + +  D    K++LG+GAYR +  +P+VL  VK AE L+  +
Sbjct: 3   TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND 62

Query: 116 RGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF 175
              N EYL I GL +     A+++FG  +  L+E RV +VQ LSGTG+L ++A    ++F
Sbjct: 63  SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFF 122

Query: 176 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH 235
           P   V +S PTW NH  IF +  +  + Y Y+  +T  LD  G +  I+ AP GS  +LH
Sbjct: 123 PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLH 182

Query: 236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM- 294
            CAHNPTG+DPT EQW +I D I  KNHI  FD AYQGFA+G LD DA +VRL   +   
Sbjct: 183 SCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242

Query: 295 --ELLVAQSYSKNLGLYAERIGAMNVVCSSSD----LAARVKSQLKRLARPMYSNPPPM 347
              + V QS++KN G+Y ER+G  ++  +       +   V SQL ++ R   SNPP  
Sbjct: 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAY 301

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score =  202 bits (514), Expect = 2e-62
 Identities = 112/289 (38%), Positives = 157/289 (54%), Gaps = 4/289 (1%)

Query: 59  FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE 118
              +    PD IL +   F+AD  + K++LGVG Y+       ++  V  AE  MLE   
Sbjct: 2   LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET 61

Query: 119 NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGA 178
            K Y  + G   F K   EL+ G      K +  AT+  + GTG+LR A  L     P  
Sbjct: 62  TKTYAGLSGEPEFQKAMGELILGDGL---KSETTATLATVGGTGALRQALELARMANPDL 118

Query: 179 KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA 238
           +V +S PTW NH +I N   +P   YRY+D +T G+DFEGM AD+ AA  G  +LLHGC 
Sbjct: 119 RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCC 178

Query: 239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV 298
           HNPTG + T +QW +IA ++++   +P  D+AYQGF    L+ DA+  RL A+R  E+L+
Sbjct: 179 HNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGD-GLEEDAAGTRLIASRIPEVLI 237

Query: 299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPM 347
           A S SKN G+Y ER G +  +C+ +      +  +  L R  YS PP  
Sbjct: 238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFH 286

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 71.4 bits (174), Expect = 2e-14
 Identities = 50/253 (19%), Positives = 92/253 (36%), Gaps = 20/253 (7%)

Query: 66  PPDPILGVSEAFKADTDEKKLNLGVG--AYRTEELQPYVLDVVKKAENLMLERGENKEYL 123
               I  + +   A   +  ++LG+G   + T     ++ +  K+A    L++G    Y 
Sbjct: 10  SASEIRKLFD--IAAGMKDVISLGIGEPDFDTP---QHIKEYAKEA----LDKGLTH-YG 59

Query: 124 PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLIS 183
           P  GL    +  AE L   +      +    V   +    L   +A ++    G +VLI 
Sbjct: 60  PNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK---DGEEVLIP 116

Query: 184 SPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG 243
           +P + ++      A     E   Y+     L+ + +   +         L+     NPTG
Sbjct: 117 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTR---ALIINSPCNPTG 173

Query: 244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYS 303
              T +  E+IAD + E + I   D  Y+ F     D    S+          +    +S
Sbjct: 174 AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYD--DARHYSIASLDGMFERTITVNGFS 231

Query: 304 KNLGLYAERIGAM 316
           K   +   R+G +
Sbjct: 232 KTFAMTGWRLGFV 244

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 67.9 bits (165), Expect = 3e-13
 Identities = 52/301 (17%), Positives = 97/301 (32%), Gaps = 31/301 (10%)

Query: 66  PPDPILGVSEAFKADTDEKK--LNLGVG--AYRTEELQPYVLDVVKKAENLMLERGENKE 121
            P   + V+        +    + L  G   + T     +V +  ++A    L +G+ K 
Sbjct: 12  KPSATVAVNAKALELRRQGVDLVALTAGEPDFDTP---EHVKEAARRA----LAQGKTK- 63

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL 181
           Y P  G+    +  AE     +   +  +      G S        A L     PG +V+
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL----DPGDEVI 119

Query: 182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241
           + SP W ++  +   A     E      +    D E +   I         L+    +NP
Sbjct: 120 VLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTK---ALVVNSPNNP 176

Query: 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS 301
           TG     E  E +A +  E +     D  Y+           S  R+        L    
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE--GEHFSPGRVAPEH---TLTVNG 231

Query: 302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQR 361
            +K   +   RIG     C   ++       +  ++R   ++P  +     L ++  ++ 
Sbjct: 232 AAKAFAMTGWRIGYA---CGPKEVIKA----MASVSRQSTTSPDTIAQWATLEALTNQEA 284

Query: 362 W 362
            
Sbjct: 285 S 285

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 67.5 bits (164), Expect = 4e-13
 Identities = 51/256 (19%), Positives = 88/256 (34%), Gaps = 22/256 (8%)

Query: 66  PPDPILGVSEAFKADTDEKK--LNLGVGA--YRTEELQPYVLDVVKKAENLMLERGENKE 121
            P   L +    KA   E     +   G   + T     ++++  K A    LE+G+ + 
Sbjct: 11  SPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTP---KHIVEAAKAA----LEQGKTR- 62

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL 181
           Y P  G     +  A+ L   +        +    G   +    L  A+IE   PG +V+
Sbjct: 63  YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFN-LMLAMIE---PGDEVI 118

Query: 182 ISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP 241
           I +P W ++  +   A                +  E +   I        +L+     NP
Sbjct: 119 IPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTK---LLVFNTPSNP 175

Query: 242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA-Q 300
           TG+  TP++   IA V  E       D  Y+       D    S+   +    E  V   
Sbjct: 176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD--DAQHLSIGAASPEAYERSVVCS 233

Query: 301 SYSKNLGLYAERIGAM 316
            ++K   +   R+G +
Sbjct: 234 GFAKTYAMTGWRVGFL 249

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 48.0 bits (113), Expect = 7e-07
 Identities = 51/279 (18%), Positives = 91/279 (32%), Gaps = 20/279 (7%)

Query: 86  LNLGVGAYRTEELQP--YVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD 143
           + L +G     + QP  ++ +   KA    ++ G N  Y   EGL    K   E      
Sbjct: 33  IRLNIGDPVKFDFQPPEHMKEAYCKA----IKEGHNY-YGDSEGLPELRKAIVER-EKRK 86

Query: 144 NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE 203
           N V        V          +  A      PG ++L+  P++  +  +         E
Sbjct: 87  NGVDITPDDVRVTAAVTEALQLIFGA---LLDPGDEILVPGPSYPPYTGLVKFYGGKPVE 143

Query: 204 YRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNH 263
           YR  + +    D + +   I         +     +NPTG     +  E+I ++  E   
Sbjct: 144 YRTIEEEDWQPDIDDIRKKITDRT---KAIAVINPNNPTGALYDKKTLEEILNIAGEYEI 200

Query: 264 IPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS 323
               D  Y             S+    T+ + ++V    SK       R+G M       
Sbjct: 201 PVISDEIYDLMTYEGEHISPGSL----TKDVPVIVMNGLSKVYFATGWRLGYM-YFVDPE 255

Query: 324 DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW 362
           +  + V+  + RLAR       P      ++ + G   +
Sbjct: 256 NKLSEVREAIDRLARIRLCPNTPAQFAA-IAGLTGPMDY 293

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 41/260 (15%), Positives = 84/260 (32%), Gaps = 24/260 (9%)

Query: 66  PPDPILGVSEAFKADTDEKK--LNLGVG--AYRTEELQPYVLDVVKKAENLMLERGENKE 121
           P    + +    KA   + +  +NL  G   + T      V++   +     L++GE K 
Sbjct: 9   PISKTMELDAKAKALIKKGEDVINLTAGEPDFPTP---EPVVEEAVRF----LQKGEVK- 60

Query: 122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAA-ALIERYFPGAKV 180
           Y    G+    +         +           V       +L  A  AL++   PG +V
Sbjct: 61  YTDPRGIYELRE--GIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD---PGDEV 115

Query: 181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN 240
           ++ SP W ++      A    +    +  K      E +        G +  +L    +N
Sbjct: 116 IVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEV---EGLLVGKTKAVLINSPNN 172

Query: 241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ 300
           PTG+    E  E +   + +K +              + +  +            ++   
Sbjct: 173 PTGVVYRREFLEGLVR-LAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFD--RIVYIN 229

Query: 301 SYSKNLGLYAERIGAMNVVC 320
            +SK+  +   R+G +    
Sbjct: 230 GFSKSHSMTGWRVGYLISSE 249

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 40/289 (13%), Positives = 82/289 (28%), Gaps = 23/289 (7%)

Query: 80  DTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVTAEL 138
           DTD+   ++ +G            ++     + +   G   +  P   G +    +T ++
Sbjct: 59  DTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKI 118

Query: 139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR 198
           L            V  +     TG          R   G+ V+I      +HK+      
Sbjct: 119 L--ESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYA--SHKSPIKAVS 174

Query: 199 V----PWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI 254
                        D   V +  E +   IK             +          +   +I
Sbjct: 175 FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRP-CVLSTLTFFPPRNSDDIVEI 233

Query: 255 ADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIG 314
           A + +  +     + AY    +  L+         A +     V  S  KNL      IG
Sbjct: 234 AKICENYDIPHIINGAYAIQNNYYLEK-----LKKAFKYRVDAVVSSSDKNLLTP---IG 285

Query: 315 AMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRWR 363
              V  + ++    +       + P  ++  P++  +      G + + 
Sbjct: 286 GGLVYSTDAEFIKEISL-----SYPGRASATPVVNTLVSLLSMGSKNYL 329

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	100.0
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	100.0
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	100.0
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	100.0
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	100.0
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	100.0
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.98
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.97
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.95
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.85
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.84
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.73
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.59
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.56
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.49
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.49
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.47
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.46
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.43
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.42
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.42
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.4
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.39
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.37
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.36
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.36
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.32
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.31
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.3
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.3
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.28
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.28
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.27
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.25
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.22
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.22
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.17
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.16
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.15
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.09
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.03
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	98.99
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	98.92
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	98.91
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	98.87
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	98.86
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	98.78
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	98.75
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	98.71
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	98.66
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	98.65
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	98.59
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	98.56
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	98.51
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	98.5
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	98.39
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	98.39
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.34
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	98.21
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	98.2
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.17
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.15
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	97.97
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	97.66
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	97.42
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	97.4
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	94.16

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=100.00  E-value=2.4e-49  Score=380.99  Aligned_cols=303  Identities=51%  Similarity=0.906  Sum_probs=261.1

Q ss_pred             ccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHH
Q 017967           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVT  135 (363)
Q Consensus        56 ~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai  135 (363)
                      +|+|+.|+..|+|+|+++.+.++.++++++|||++|.|.|+++.+++++.|++++..+...+..++|++..|.++||+++
T Consensus         1 ~~~~~~~~~~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai   80 (401)
T d7aata_           1 SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRAS   80 (401)
T ss_dssp             CCSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred             CCccccCCCCCCChHHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999998888666657899999999999999


Q ss_pred             HHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHH-HhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCC
Q 017967          136 AELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIE-RYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL  214 (363)
Q Consensus       136 a~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~-~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  214 (363)
                      ++++.+.++..+.+++|++.++.++++++..+..++. ++.|||.|++++|+|++|...++..|++++.+|+++++++.+
T Consensus        81 a~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~  160 (401)
T d7aata_          81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL  160 (401)
T ss_dssp             HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred             HHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccc
Confidence            9999999988888999988777778888776655444 456999999999999999999999999999999988888899


Q ss_pred             CHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC
Q 017967          215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM  294 (363)
Q Consensus       215 d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  294 (363)
                      +++.+.+.+...+++++++++||||||||.+++.+++++|+++|++|+++||+||+|.++.+++...+......+....+
T Consensus       161 ~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  240 (401)
T d7aata_         161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI  240 (401)
T ss_dssp             CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred             cHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhc
Confidence            99999998877667789999999999999999999999999999999999999999999999753222223334456678


Q ss_pred             eEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          295 ELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       295 ~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +++++.|+||.++++|+|+||+++.....+...++...+....+..+.+++.+.|.+++..+.+
T Consensus       241 ~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  304 (401)
T d7aata_         241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNT  304 (401)
T ss_dssp             CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHC
T ss_pred             ccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCC
Confidence            8999999999999999999999444333344455666666666778889999999999877664

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=100.00  E-value=9.1e-48  Score=371.26  Aligned_cols=302  Identities=41%  Similarity=0.755  Sum_probs=258.1

Q ss_pred             ccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHc-cCCCCCCCCCcchHHHHHH
Q 017967           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGENKEYLPIEGLAAFNKV  134 (363)
Q Consensus        56 ~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-~~~~~~Y~~~~G~~~lr~a  134 (363)
                      .|.|++|+..++|+|+++.+++++++++++|||++|.|.|+++.+++++.|+++...+.. ....++|+|..|.++||++
T Consensus         2 ~~~~~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~a   81 (412)
T d1yaaa_           2 ATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSN   81 (412)
T ss_dssp             TTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred             cChhhcCCcCCCChHHHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHH
Confidence            368999999999999999999999999999999999999999999999999999877653 3445789999999999999


Q ss_pred             HHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCC
Q 017967          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGL  214 (363)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~  214 (363)
                      +++++.+.++..+.+++++++++.|+.+++.++..+.....|||.|++++|+|+.|...++..|.+++.+|+.+++.+.+
T Consensus        82 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~  161 (412)
T d1yaaa_          82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSL  161 (412)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEE
T ss_pred             HHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceecccccccccccc
Confidence            99999999888888888888777888888777766666778999999999999999999999999999999987888899


Q ss_pred             CHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH---HHh
Q 017967          215 DFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL---FAT  291 (363)
Q Consensus       215 d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---~~~  291 (363)
                      +.+.+++.+...+++++++++++||||||.+++.+++++|+++|++++++||+||+|.+|.+++..........   ..+
T Consensus       162 ~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~  241 (412)
T d1yaaa_         162 DLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLS  241 (412)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTT
T ss_pred             cchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccc
Confidence            99999999988777889999999999999999999999999999999999999999999999753211111111   234


Q ss_pred             cCCeEEEEEcCccccccccccceEEEEeeCCh------hHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSS------DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       292 ~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~------~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ..++++++.||||.|+++|+|+||+  +++++      ...+.+..++....+.++.+++.++|.+++.++.+.
T Consensus       242 ~~~~~i~~~s~SK~~~~~G~RiG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  313 (412)
T d1yaaa_         242 TVSPVFVCQSFAKNAGMYGERVGCF--HLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETP  313 (412)
T ss_dssp             TTCCEEEEEECTTTSCCGGGCEEEE--EEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH
T ss_pred             cCCCeEEEEecCCccccCcCceEEE--EEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCh
Confidence            5689999999999999999999999  55532      122344455556667889999999999998877653

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=100.00  E-value=6.2e-47  Score=365.32  Aligned_cols=303  Identities=46%  Similarity=0.785  Sum_probs=259.6

Q ss_pred             ccccCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHc-cCCCCCCCCCcchHHHHHH
Q 017967           56 VSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGENKEYLPIEGLAAFNKV  134 (363)
Q Consensus        56 ~s~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-~~~~~~Y~~~~G~~~lr~a  134 (363)
                      +|.|++++..++++|+++...++.++++++|||++|.|.|+++++++++.|++++..+.. ....++|+|..|.++||++
T Consensus         3 ~s~~~~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lrea   82 (412)
T d1ajsa_           3 PSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTC   82 (412)
T ss_dssp             CCTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred             cChhhhCCcCCCChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999887764 3345789999999999999


Q ss_pred             HHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-----hCCCCEEEEcCCCCcchHHHHhhCCCCeEEE-eccc
Q 017967          135 TAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-----YFPGAKVLISSPTWGNHKNIFNDARVPWSEY-RYYD  208 (363)
Q Consensus       135 ia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-----~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v-~~~~  208 (363)
                      +++++.+.++..+.++++.+++|.|+++++..+..++..     ..|||.|++++|+|++|..+++..|++.+.+ +..+
T Consensus        83 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~  162 (412)
T d1ajsa_          83 ASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWD  162 (412)
T ss_dssp             HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEE
T ss_pred             HHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeecccc
Confidence            999999999888889999888899999888776554433     3699999999999999999999999987655 4555


Q ss_pred             CCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH
Q 017967          209 PKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (363)
Q Consensus       209 ~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  288 (363)
                      +..+..|++.+++.+....++++++++|+||||||.+++.+++++|+++|++||++||+||+|.++.+++...+..+...
T Consensus       163 ~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~  242 (412)
T d1ajsa_         163 TEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRY  242 (412)
T ss_dssp             TTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred             cccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhh
Confidence            66678899999988877667889999999999999999999999999999999999999999999998753222333444


Q ss_pred             HHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       289 ~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      .....++++++.|+||.++++|+|+||+++.....+.++++...+.......+.+++.++|.++..++.+
T Consensus       243 ~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (412)
T d1ajsa_         243 FVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSD  312 (412)
T ss_dssp             HHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHS
T ss_pred             hhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcC
Confidence            4567789999999999999999999999555445555667777777778889999999999999877654

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-47  Score=367.93  Aligned_cols=299  Identities=41%  Similarity=0.732  Sum_probs=253.7

Q ss_pred             cCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHc-cCCCCCCCCCcchHHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLE-RGENKEYLPIEGLAAFNKVTAE  137 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-~~~~~~Y~~~~G~~~lr~aia~  137 (363)
                      |++++..+.|||+++.+.++.++++++|||++|.|.|+++.+++++.|+++...+.. ....++|+|..|.++||+++|+
T Consensus         2 ~~~~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~   81 (397)
T d3tata_           2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAP   81 (397)
T ss_dssp             CCCCCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHH
T ss_pred             cccCCCCCCCcHHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHH
Confidence            789999999999999999999999999999999999989988899999999877653 3344779999999999999999


Q ss_pred             HHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHH
Q 017967          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (363)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (363)
                      ++.+.++..+.+++|++.++.+++++..+...+...+.|||.|++++|+|+.|...++..|.+++.+|++++..+..+.+
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~  161 (397)
T d3tata_          82 LLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFN  161 (397)
T ss_dssp             HHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHH
T ss_pred             HHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchH
Confidence            99999998899999988444444444444433555678999999999999999999999999999999987777888999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEE
Q 017967          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (363)
Q Consensus       218 ~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi  297 (363)
                      .+.+.+...++++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++. .............++++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~i  240 (397)
T d3tata_         162 DLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGME-EDAYAIRAIASAGLPAL  240 (397)
T ss_dssp             HHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHH-HHHHHHHHHHTTTCCCE
T ss_pred             HHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCc-ccchhhhhhhhcCCceE
Confidence            99998887777888999999999999999999999999999999999999999999998731 12223333345678999


Q ss_pred             EEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       298 ~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++.||||.++++|+|+||+++.....+...++...+....+..+.+++.+.|.++...+..
T Consensus       241 ~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~  301 (397)
T d3tata_         241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLND  301 (397)
T ss_dssp             ECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHS
T ss_pred             EEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCC
Confidence            9999999999999999999544444445666777777777888999999999999876654

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-46  Score=359.73  Aligned_cols=297  Identities=44%  Similarity=0.778  Sum_probs=240.7

Q ss_pred             cCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (363)
                      |.+++..|+|+|+++.+.+++++++++|||++|.|.|+++.+++++.|++++.++.+....++|+|..|.++||++++++
T Consensus         2 f~~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~   81 (396)
T d2q7wa1           2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQEL   81 (396)
T ss_dssp             CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHH
T ss_pred             ccccccCCCChHHHHHHHHhccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHH
Confidence            77899999999999999999999999999999999999999999999999998887665557899999999999999999


Q ss_pred             HhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHH
Q 017967          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (363)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (363)
                      +.++++..+.++++.+++|.|+++++.+...++..+.+||.|++++|+|++|...++..|++++.+++++++++..+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~  161 (396)
T d2q7wa1          82 LFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDA  161 (396)
T ss_dssp             HHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHH
T ss_pred             HHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccch
Confidence            99998888888888877789998888888767777889999999999999999999999999999999877778889999


Q ss_pred             HHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEE
Q 017967          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (363)
Q Consensus       219 l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~  298 (363)
                      +++......+++++++++|||||||.+++.+++++|+++|++|+++||+||+|+++.+++. ........+.+..+++++
T Consensus       162 ~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~~~  240 (396)
T d2q7wa1         162 LINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE-EDAEGLRAFAAMHKELIV  240 (396)
T ss_dssp             HHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH-HHTHHHHHHHHHCSCEEE
T ss_pred             HHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCc-cCchHhhhhhhhcccccc
Confidence            8888877777899999999999999999999999999999999999999999999998742 122233344566789999


Q ss_pred             EEcCccccccccccceEEEEeeCCh--hHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          299 AQSYSKNLGLYAERIGAMNVVCSSS--DLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       299 ~~S~SK~~~l~G~RvG~i~~v~~~~--~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +.|+||.++++|+|+||+  +++..  +...++...+....+..+.+++.+.|.++..++++
T Consensus       241 ~~s~sk~~~~~G~R~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~  300 (396)
T d2q7wa1         241 ASSYSKNFGLYNERVGAC--TLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN  300 (396)
T ss_dssp             EEECTTTTTCGGGCCEEE--EEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTS
T ss_pred             cccccccccccCCCcccc--ccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcC
Confidence            999999999999999999  55532  33444444455556778899999999998877654

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=8.9e-45  Score=347.98  Aligned_cols=296  Identities=37%  Similarity=0.639  Sum_probs=248.5

Q ss_pred             cCCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHH
Q 017967           59 FEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAEL  138 (363)
Q Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~  138 (363)
                      |++++.+++|+|+++...+++++++++|||++|.|.|+++.+++++.|++++..+.+....++|+|..|.++||++++++
T Consensus         2 ~~~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~   81 (394)
T d2ay1a_           2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGEL   81 (394)
T ss_dssp             GGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHH
T ss_pred             CCCCCCCCCChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHH
Confidence            56788899999999999999999999999999999999999999999999999888655557899999999999999999


Q ss_pred             HhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHH
Q 017967          139 LFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEG  218 (363)
Q Consensus       139 l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~  218 (363)
                      +.+.++....++.+   +|.||+++..+...++....+||.|++++|+|+.|..+++..|.+++.+++++++.+..+.+.
T Consensus        82 ~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~  158 (394)
T d2ay1a_          82 ILGDGLKSETTATL---ATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEG  158 (394)
T ss_dssp             HHGGGCCGGGEEEE---EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHH
T ss_pred             Hhccccccccccce---eccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchh
Confidence            98876654444333   367777777676666777789999999999999999999999999999999877788889999


Q ss_pred             HHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEE
Q 017967          219 MIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLV  298 (363)
Q Consensus       219 l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~  298 (363)
                      +++.....+++++++++|+||||||.+++.+++++|+++|++++++||+||+|.++.+++. ..............++++
T Consensus       159 ~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~~~~~~~  237 (394)
T d2ay1a_         159 MKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPEVLI  237 (394)
T ss_dssp             HHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSSEEE
T ss_pred             HHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhccccc-ccchhhhhhhhhcccccc
Confidence            9988887777899999999999999999999999999999999999999999999998742 111122222345678999


Q ss_pred             EEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          299 AQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       299 ~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +.|+||.++++|+|+||+.+.....+....+...+.......+.+++...|.++...+.+
T Consensus       238 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (394)
T d2ay1a_         238 AASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTT  297 (394)
T ss_dssp             EEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHS
T ss_pred             cccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCC
Confidence            999999999999999999444444444555666666677788889999999988766543

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=1.1e-44  Score=346.87  Aligned_cols=279  Identities=17%  Similarity=0.174  Sum_probs=227.7

Q ss_pred             CCCCCCCCchhhHHH---HHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHH
Q 017967           61 GVTMAPPDPILGVSE---AFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (363)
Q Consensus        61 ~v~~~~~~~~~~~~~---~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (363)
                      ++...+++++..+.+   +++.++ .++|+|++|+|. .    .+++.+.+++.+.++.+. ++|++..|.++||+++++
T Consensus         6 ~~~~~~~s~~~~i~~~a~~~~~~g-~~vi~l~~G~p~-~----~~p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lR~aia~   78 (388)
T d1j32a_           6 RVESVSPSMTLIIDAKAKAMKAEG-IDVCSFSAGEPD-F----NTPKHIVEAAKAALEQGK-TRYGPAAGEPRLREAIAQ   78 (388)
T ss_dssp             HHHTSCCCSSTTTHHHHHHHHTTT-CCCEECCCSSCS-S----CCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHH
T ss_pred             HhhcCCcCHHHHHHHHHHHHHHCC-CCeEECCCCCCC-C----CCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHH
Confidence            344555666555544   444444 379999999872 2    245778888877776544 789999999999999999


Q ss_pred             HHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHH
Q 017967          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (363)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (363)
                      ++.+.++..+++++|++  |+|+++++.++  +..++.|||.|++++|+|+.|...++..|.+++.++...++++.+|++
T Consensus        79 ~~~~~~g~~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~  154 (388)
T d1j32a_          79 KLQRDNGLCYGADNILV--TNGGKQSIFNL--MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPE  154 (388)
T ss_dssp             HHHHHHCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHH
T ss_pred             HHHHhcccCCCCceEEE--cCCHHHHHHHH--HHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHH
Confidence            99888888899999988  99999999998  455678999999999999999999999999999999877777899999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH-hcCCeE
Q 017967          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMEL  296 (363)
Q Consensus       218 ~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~v  296 (363)
                      +|++.++   +++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++..  ..++.... ...+++
T Consensus       155 ~l~~~~~---~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~--~~s~~~~~~~~~~~~  229 (388)
T d1j32a_         155 QIRQAIT---PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQ--HLSIGAASPEAYERS  229 (388)
T ss_dssp             HHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGGSCHHHHHTE
T ss_pred             HHHHhCC---CCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCC--CCCHHHhCcccccce
Confidence            9999886   45778889999999999999999999999999999999999999999987532  22222221 223589


Q ss_pred             EEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       297 i~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ++++||||.|+++|+|+||+  +++ ++    +++++.+.......+++.+.|.++...+...++|
T Consensus       230 i~~~S~SK~~~~~GlRvG~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~  288 (388)
T d1j32a_         230 VVCSGFAKTYAMTGWRVGFL--AGP-VP----LVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDC  288 (388)
T ss_dssp             EEEEESTTTTTCTTTCCEEE--ECC-HH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHH
T ss_pred             eEecCChhhhhcchhHeEEE--EEC-HH----HHHHHHHhhhhccccccHHHHHHHhhcccchHHH
Confidence            99999999999999999999  765 66    5666666666677799999999998887766655

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.8e-43  Score=337.68  Aligned_cols=271  Identities=18%  Similarity=0.189  Sum_probs=225.3

Q ss_pred             CCCCCCCCchhhHHHHH---hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHH
Q 017967           61 GVTMAPPDPILGVSEAF---KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (363)
Q Consensus        61 ~v~~~~~~~~~~~~~~~---~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (363)
                      ++....|+++.++.+..   +.++ .++|+|++|+|.     ..+++.+++++.+.+..+. ++|++..|.++||+++++
T Consensus         7 r~~~~~~s~~~~i~~~a~~~~~~G-~~vi~l~~g~p~-----~~~p~~i~~a~~~~~~~~~-~~Y~~~~G~~~lR~~ia~   79 (382)
T d1b5pa_           7 RVQAMKPSATVAVNAKALELRRQG-VDLVALTAGEPD-----FDTPEHVKEAARRALAQGK-TKYAPPAGIPELREALAE   79 (382)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHTT-CCCEECCCSSCS-----SCCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhCC-CCeEECCCCCCC-----CCCCHHHHHHHHHHHhcCC-cCCCCCCCCHHHHHHHHh
Confidence            44455677777776543   4443 479999999972     2246788888877765544 789999999999999999


Q ss_pred             HHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHH
Q 017967          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (363)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (363)
                      ++...++..+++++|++  |+|+++++.++  +..++.+||.|++++|+|++|...++..|.+++.+++++++++.+|++
T Consensus        80 ~~~~~~~~~~~~~~i~i--t~G~~~al~~~--~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  155 (382)
T d1b5pa_          80 KFRRENGLSVTPEETIV--TVGGSQALFNL--FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPE  155 (382)
T ss_dssp             HHHHTTCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHH
T ss_pred             hhhhhccccccccccee--cCCHHHHHHHH--HHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHH
Confidence            99998999999999988  99999999888  455678999999999999999999999999999999877778899999


Q ss_pred             HHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEE
Q 017967          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (363)
Q Consensus       218 ~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi  297 (363)
                      .+++.++   ++++++++||||||||.+++.+++++|+++|+++|++||+||+|.++.+++..  ..+.   ....++++
T Consensus       156 ~l~~~~~---~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~--~~~~---~~~~~~~i  227 (382)
T d1b5pa_         156 RVRRAIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH--FSPG---RVAPEHTL  227 (382)
T ss_dssp             HHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC--CCGG---GTCTTTEE
T ss_pred             HHHHhCC---CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCC--CCHH---HcCCCCEE
Confidence            9998775   45778889999999999999999999999999999999999999999986532  1221   23457999


Q ss_pred             EEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       298 ~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +++||||.|+++|+|+||+  +++ ++    +++++..+......+++.+.|.++...+.
T Consensus       228 ~~~s~SK~~~~~GlR~G~~--~~~-~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (382)
T d1b5pa_         228 TVNGAAKAFAMTGWRIGYA--CGP-KE----VIKAMASVSRQSTTSPDTIAQWATLEALT  280 (382)
T ss_dssp             EEEESTTTTTCGGGCCEEE--ECC-HH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHH
T ss_pred             EEecchhhccCcHhheEEE--EEC-HH----HHHHHHHHHHhcccCcccccccccccccc
Confidence            9999999999999999999  766 66    56667667677778889999888766554

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.7e-43  Score=338.09  Aligned_cols=271  Identities=17%  Similarity=0.192  Sum_probs=222.1

Q ss_pred             CCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCC
Q 017967           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNS  145 (363)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (363)
                      +++.|.++......  .+++|+|++|+|.     ..+++.+++++.+.++.+. .+|++..|.++||+++|+++...++.
T Consensus        10 ~~s~ir~~~~~~~~--~~dvi~l~~g~p~-----~~~p~~v~~~~~~a~~~~~-~~Y~~~~G~~~lr~aia~~~~~~~~~   81 (388)
T d1gdea_          10 SASEIRKLFDIAAG--MKDVISLGIGEPD-----FDTPQHIKEYAKEALDKGL-THYGPNIGLLELREAIAEKLKKQNGI   81 (388)
T ss_dssp             CCCHHHHHHHHHHH--CTTCEECCCCSCC-----SCCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred             CccHHHHHHHHHhC--CCCeEECCCCCCC-----CCCCHHHHHHHHHHHhcCc-cCCCCCcCCHHHHHHHHHHHHhhccc
Confidence            45667666655444  3579999999972     2246778888877776544 78999999999999999998654433


Q ss_pred             -cccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHH
Q 017967          146 -VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (363)
Q Consensus       146 -~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (363)
                       ...+++|++  |.|+++++.++  +..++.|||+|++++|+|..|...++..|.+++.+|+++++++++|+++|++.++
T Consensus        82 ~~~~~~~i~~--t~G~~~~l~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~  157 (388)
T d1gdea_          82 EADPKTEIMV--LLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT  157 (388)
T ss_dssp             CCCTTTSEEE--ESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred             cCCChheeee--ccCcchHHHHH--HHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCc
Confidence             345678988  99999999888  5556789999999999999999999999999999999777789999999998886


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcc
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  304 (363)
                         ++++++++||||||||.+++.+++++|+++|++++++||+||+|.++.+++.  ...++..+....+++|+++||||
T Consensus       158 ---~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK  232 (388)
T d1gdea_         158 ---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITVNGFSK  232 (388)
T ss_dssp             ---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEESTT
T ss_pred             ---cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccC--CCCChhhccCCCCeEEEEeCChh
Confidence               3577888999999999999999999999999999999999999999988653  23333333334578999999999


Q ss_pred             ccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          305 NLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       305 ~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      .||++|+|+||+  +++ ++    ++.++.........+++.+.|.+++.+|.+.+
T Consensus       233 ~~~~~GlR~G~i--i~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  281 (388)
T d1gdea_         233 TFAMTGWRLGFV--AAP-SW----IIERMVKFQMYNATCPVTFIQYAAAKALKDER  281 (388)
T ss_dssp             TTTCGGGCCEEE--ECC-HH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHH
T ss_pred             hccCccccEEEE--Eee-cc----chhhhhhccccccccccccchhhHHHHHhhcc
Confidence            999999999999  776 55    56666666667778999999999988877654

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=7.7e-42  Score=327.78  Aligned_cols=272  Identities=18%  Similarity=0.162  Sum_probs=220.6

Q ss_pred             HHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEE
Q 017967           74 SEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVA  153 (363)
Q Consensus        74 ~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~  153 (363)
                      .+++++++ .++|+|++|+|.+.+  ..+++.+++++.+.+..+. ++|++..|.++||+++++++.+.++..+++++|+
T Consensus        22 a~~l~~~G-~~vi~l~~G~P~~~d--f~~p~~i~~a~~~a~~~~~-~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~   97 (395)
T d1xi9a_          22 ARELEKKG-IKVIRLNIGDPVKFD--FQPPEHMKEAYCKAIKEGH-NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVR   97 (395)
T ss_dssp             HHHHHHTT-CCCEECCCCCGGGTT--CCCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred             HHHHHHCC-CCeEECCCCCCCCCC--CCCCHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHhhhhcccccccccccc
Confidence            45555554 379999999974322  2346788888887775544 6799999999999999999998889999999998


Q ss_pred             EEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEE
Q 017967          154 TVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL  233 (363)
Q Consensus       154 ~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~  233 (363)
                      +  |.|+++++.++  +..++.+||.|++++|+|+.|...++..|.+++.+++..++++.+|++.+++.+.   ++++++
T Consensus        98 i--~~G~~~~~~~~--~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~---~~~~~v  170 (395)
T d1xi9a_          98 V--TAAVTEALQLI--FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT---DRTKAI  170 (395)
T ss_dssp             E--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC---TTEEEE
T ss_pred             c--ccccchhhhhh--hhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhc---ccccEE
Confidence            8  99999999888  5556789999999999999999999999999999998777789999999998876   457788


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccc
Q 017967          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (363)
Q Consensus       234 ~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv  313 (363)
                      ++||||||||.+++.+++++|+++|++++++||+||+|.++.++...   .+... ....+++|+++||||.|+++|+|+
T Consensus       171 ~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~---~~~~~-~~~~~~vi~~~S~SK~~~~~GlRv  246 (395)
T d1xi9a_         171 AVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEH---ISPGS-LTKDVPVIVMNGLSKVYFATGWRL  246 (395)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCC---CCHHH-HCSSSCEEEEEESTTTTCCGGGCC
T ss_pred             EecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccc---cchhh-cCCCCCEEEEeCcchhcccchhhc
Confidence            89999999999999999999999999999999999999999886432   22222 245578999999999999999999


Q ss_pred             eEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       314 G~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ||+++..+ ...+..+.+..... .....+++.++|.++...+...++|
T Consensus       247 G~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~q~a~~~~l~~~~~~  293 (395)
T d1xi9a_         247 GYMYFVDP-ENKLSEVREAIDRL-ARIRLCPNTPAQFAAIAGLTGPMDY  293 (395)
T ss_dssp             EEEEEECT-TCTTHHHHHHHHHH-HHHTCCSCSHHHHHHHHHHHSCCHH
T ss_pred             EeeEecCH-HHHHHHHHHHHHHh-hcCCCCcCHHHHHHHHHHhcCCHHH
Confidence            99943333 33333344433333 2345688899999998888776666

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=4.7e-41  Score=323.83  Aligned_cols=284  Identities=17%  Similarity=0.165  Sum_probs=216.2

Q ss_pred             CchhhHHHHHhcCCCC-CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCC---
Q 017967           68 DPILGVSEAFKADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAD---  143 (363)
Q Consensus        68 ~~~~~~~~~~~~~~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~---  143 (363)
                      .++..+.+.++..+++ ++|+|++|+| +...+..+.+.+.+++.+..+....++|++..|.++||+++|+|+.+++   
T Consensus        14 ~pir~~~~~~~~~~~~~~vI~L~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~   92 (412)
T d1bw0a_          14 NPIRTVSDNAKPSPSPKPIIKLSVGDP-TLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHK   92 (412)
T ss_dssp             CHHHHHHHTCCCCCSCSCCEECCCCCT-TTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCS
T ss_pred             cHHHHHHHhcCCCCCCCCcEECcCCCC-CCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcc
Confidence            4566666666665554 6899999997 4444455677888888776655555789999999999999999987643   


Q ss_pred             ---CCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHH
Q 017967          144 ---NSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI  220 (363)
Q Consensus       144 ---~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~  220 (363)
                         +..+++++|++  |+|+++++.++  +..++.+||+|++++|+|+.|...++..|++++.+++++++++.++++.++
T Consensus        93 ~~~~~~~~~~~I~i--t~G~~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~  168 (412)
T d1bw0a_          93 EELKSTIVKDNVVL--CSGGSHGILMA--ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIR  168 (412)
T ss_dssp             TTTGGGCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHH
T ss_pred             cccCCCCCCCeEEE--ecccccchhhh--hhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHHHH
Confidence               45688999988  99999999988  455678999999999999999999999999999999987778889999998


Q ss_pred             HHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhH-HHHHHhcCCeEEEE
Q 017967          221 ADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS-VRLFATRGMELLVA  299 (363)
Q Consensus       221 ~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~-~~~~~~~~~~vi~~  299 (363)
                      +...   +.+++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++..+.... .....+...+++++
T Consensus       169 ~~~~---~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
T d1bw0a_         169 RLKD---DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVIL  245 (412)
T ss_dssp             HHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEE
T ss_pred             hhhh---ccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccc
Confidence            8765   4678888999999999999999999999999999999999999999998753211110 00012344678999


Q ss_pred             EcCccccccccccceEEEEeeCChhH-HHHHHHHHHhhhccccCCCchHHHHHH-hccccccccC
Q 017967          300 QSYSKNLGLYAERIGAMNVVCSSSDL-AARVKSQLKRLARPMYSNPPPMLLGIQ-LSSMNGKQRW  362 (363)
Q Consensus       300 ~S~SK~~~l~G~RvG~i~~v~~~~~~-~~~~~~~l~~~~~~~~~~~s~~~q~~~-~~~l~~~~~w  362 (363)
                      +||||.|+++|+|+||+  +++++.. ...++......... ..+++...|..+ ..+++..++|
T Consensus       246 ~s~SK~~~~~G~RvG~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  307 (412)
T d1bw0a_         246 GGTAKNLVVPGWRLGWL--LYVDPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNTPQEH  307 (412)
T ss_dssp             EESTTTTSCGGGCCEEE--EEECTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSCHHH
T ss_pred             cccCccCccCCCCcccc--cccchhhcchhhhhhhcccccc-ccCCchhhhhhcccccccccccc
Confidence            99999999999999999  6654321 11233434333322 334555555544 4444444444

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=8.1e-40  Score=315.84  Aligned_cols=273  Identities=14%  Similarity=0.060  Sum_probs=218.8

Q ss_pred             CCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHH
Q 017967           60 EGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAE  137 (363)
Q Consensus        60 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~  137 (363)
                      .+++..+++.+.++.+....   ++.|||++|.|. ..    +++.+++++.+.....  ..++|++..|.++||+++|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~---~~~I~L~~G~Pd-~~----~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~   77 (418)
T d2r5ea1           6 KRYQGSTKSVWVEYIQLAAQ---YKPLNLGQGFPD-YH----APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSK   77 (418)
T ss_dssp             GGGTTCCCCHHHHHHHHHHH---HCCEECSSSCCS-SC----CCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHH
T ss_pred             hhhcCCCCCHHHHHHHHhcC---CCCEEccCCCCC-CC----CCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHH
Confidence            35666667777666655443   268999999973 21    3567777777766332  23679999999999999999


Q ss_pred             HHhcCCCCcccC-CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCC-----
Q 017967          138 LLFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKT-----  211 (363)
Q Consensus       138 ~l~~~~~~~~~~-~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~-----  211 (363)
                      ++.+.++..+++ ++|++  |+|+++++.++  +..++.|||.|++++|+|+.|...+...|.+++.++++.+..     
T Consensus        78 ~~~~~~g~~~~p~~~I~i--t~G~~~al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~  153 (418)
T d2r5ea1          78 LYSQLVDRTINPMTEVLV--TVGAYEALYAT--IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTIS  153 (418)
T ss_dssp             HHHHHHTSCCCTTTSEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEE
T ss_pred             HHHHHhCCCCCccceEEE--cCCCchhhhhh--hhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccchh
Confidence            998888888875 88988  99999999988  555678999999999999999999999999999999864432     


Q ss_pred             ---CCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH
Q 017967          212 ---VGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL  288 (363)
Q Consensus       212 ---~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  288 (363)
                         +.++++.+.+...   .+++++++||||||||.+++.+++++|+++|++++++||+||+|.++.+++..  ..++..
T Consensus       154 ~~~~~~~~~~~~~~~~---~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~--~~s~~~  228 (418)
T d2r5ea1         154 SADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE--HIRICT  228 (418)
T ss_dssp             GGGEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC--CCCGGG
T ss_pred             hhhhhhhHHHHhhhhh---ccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCc--cccccc
Confidence               4567777766544   56889999999999999999999999999999999999999999999987532  233333


Q ss_pred             HHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccc
Q 017967          289 FATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSM  356 (363)
Q Consensus       289 ~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l  356 (363)
                      +.+...++++++||||.+++||+|+||+  +++ ++    +++++.+.......+++.+.|.+++..+
T Consensus       229 ~~~~~~~~i~~~S~SK~~~~pGlRiG~~--~~~-~~----~i~~~~~~~~~~~~~~~~~~q~a~~~~l  289 (418)
T d2r5ea1         229 LPGMWERTITIGSAGKTFSLTGWKIGWA--YGP-EA----LLKNLQMVHQNCVYTCATPIQEAIAVGF  289 (418)
T ss_dssp             STTTGGGEEEEEEHHHHTTCGGGCCEEE--ESC-HH----HHHHHHHHHTTTTCSCCHHHHHHHHHHH
T ss_pred             cccccceeeeeecCCccccCCCcccccc--ccc-ch----hhhhhhhcccccccccccchhhhccccc
Confidence            4455679999999999999999999999  776 55    6677777766677788889898776544

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-40  Score=316.00  Aligned_cols=277  Identities=16%  Similarity=0.104  Sum_probs=220.7

Q ss_pred             CCCCCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC-CCCCCCCCcchHHHHHHHHHH
Q 017967           60 EGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG-ENKEYLPIEGLAAFNKVTAEL  138 (363)
Q Consensus        60 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~  138 (363)
                      +++....+.++.+..+...   .+++|+|++|.|. .    .+++.+.+++.+.+..+ ..++|++..|.++||+++|++
T Consensus         5 ~r~~~~~~~~~~~~~~~~~---~~dvI~l~~G~p~-~----~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~   76 (418)
T d1w7la_           5 RRLDGIDYNPWVEFVKLAS---EHDVVNLGQGFPD-F----PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASF   76 (418)
T ss_dssp             GGGTTCCCCTHHHHHHHHH---TSCCEECCCCSCS-S----CCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHH
T ss_pred             ccccCCCCCHHHHHHHHhC---CCCCEECCCCCCC-C----CCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHH
Confidence            3555566677766655433   2479999999973 1    23567888877766432 235799999999999999999


Q ss_pred             HhcCCCCcccC-CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccC--------
Q 017967          139 LFGADNSVLKE-QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP--------  209 (363)
Q Consensus       139 l~~~~~~~~~~-~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~--------  209 (363)
                      +.+.+|..+++ ++|++  |+|+++++.++  +..++.+||.|+++.|+|+.|...+...|.+++.++....        
T Consensus        77 ~~~~~g~~~~~~~~I~i--t~G~~~al~~~--~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~  152 (418)
T d1w7la_          77 FGELLGQEIDPLRNVLV--TVGGYGALFTA--FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELG  152 (418)
T ss_dssp             HHHHHTCCCCHHHHEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSE
T ss_pred             HHHHhCCCCCcccceee--ccCcHHHHHHH--HHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccc
Confidence            98777777775 68988  99999999998  4556789999999999999999999999999998886532        


Q ss_pred             --CCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHH
Q 017967          210 --KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVR  287 (363)
Q Consensus       210 --~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~  287 (363)
                        .++.+|.+++.....   +.+++++++|||||||.+++.+++++|+++|+++++++|+||+|.++.+++.  ...++.
T Consensus       153 ~~~~~~~d~~~~~~~~~---~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~--~~~~~~  227 (418)
T d1w7la_         153 SSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHISIA  227 (418)
T ss_dssp             EGGGEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGG
T ss_pred             cccCcccchhhhhcccc---ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCC--CCCCHH
Confidence              234456655554333   5678889999999999999999999999999999999999999999998753  234444


Q ss_pred             HHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccc
Q 017967          288 LFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQ  360 (363)
Q Consensus       288 ~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~  360 (363)
                      ++.+..++++++.||||.+++||+|+||+  +++ ++    ++..+++.......+++.+.|.+++..|...+
T Consensus       228 ~~~~~~~~~i~~~S~SK~~~~pG~RvG~~--v~~-~~----~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~  293 (418)
T d1w7la_         228 SLPGMWERTLTIGSAGKTFSATGWKVGWV--LGP-DH----IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQ  293 (418)
T ss_dssp             GSTTTGGGEEEEEEHHHHTTCGGGCCEEE--ECC-HH----HHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HccccccccceecccCccccCCCCccccc--ccc-hh----hhhhhccccccccccccchhhHHHHHHhhhcc
Confidence            44455679999999999999999999999  776 66    66667777777788999999999988776543

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.3e-39  Score=306.13  Aligned_cols=264  Identities=17%  Similarity=0.171  Sum_probs=215.0

Q ss_pred             hhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC
Q 017967           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (363)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~  149 (363)
                      +.+..+..++.+ .++|+|++|.|.     ..+++.+.+++.+.+..+. ++|++..|.++||+++++++...++..+++
T Consensus        16 ~~~~a~~~~~~G-~~vI~l~~G~p~-----~~~p~~i~~~~~~~~~~~~-~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~   88 (375)
T d1o4sa_          16 LDAKAKALIKKG-EDVINLTAGEPD-----FPTPEPVVEEAVRFLQKGE-VKYTDPRGIYELREGIAKRIGERYKKDISP   88 (375)
T ss_dssp             HHHHHHHHHHTT-CCCEECCCSSCS-----SCCCHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHHHHHHHHHHHTCCCCG
T ss_pred             HHHHHHHHHHCC-CCeEECCCcCCC-----CCCCHHHHHHHHHHHhcCC-cCCCCCcCCHHHHHHHHhhhhhcccccccc
Confidence            444444555444 379999999872     1235778888877765544 689999999999999999998888888999


Q ss_pred             CcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          150 QRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       150 ~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      ++|++  |.|+++++.++  +..++.+||.|++++|+|+.|...+...|...+.++..+.+.+.++.+.++....   ++
T Consensus        89 ~~i~~--t~G~~~al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  161 (375)
T d1o4sa_          89 DQVVV--TNGAKQALFNA--FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV---GK  161 (375)
T ss_dssp             GGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC---TT
T ss_pred             ccccc--cCcHHHHHHHH--HHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhc---cC
Confidence            99988  99999999888  5556789999999999999999999999999999988777778888888876544   46


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLY  309 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~  309 (363)
                      +++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++..   ........+..+++++++||||.|++|
T Consensus       162 ~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~---~~~~~~~~~~~~~~i~~~S~SK~~~l~  238 (375)
T d1o4sa_         162 TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE---FTSILDVSEGFDRIVYINGFSKSHSMT  238 (375)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC---CCCHHHHCSSSTTEEEEEESTTTTTCG
T ss_pred             ccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccc---ccccccccCCCCCEEEEeechhhccCC
Confidence            77899999999999999999999999999999999999999999988643   223333456678999999999999999


Q ss_pred             cccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          310 AERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       310 G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |+|+||+  +++ ++    +++.+.........+.+...|......+.
T Consensus       239 G~R~G~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (375)
T d1o4sa_         239 GWRVGYL--ISS-EK----VATAVSKIQSHTTSCINTVAQYAALKALE  279 (375)
T ss_dssp             GGCCEEE--ECC-HH----HHHHHHHHHHHHTCSCCHHHHHHHHHHTT
T ss_pred             ccccccc--ccc-cc----chhhhhhhhccccccccccchhhhhhhcc
Confidence            9999999  766 65    45555555555566778888877766443

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=8.4e-38  Score=302.57  Aligned_cols=262  Identities=14%  Similarity=0.153  Sum_probs=203.3

Q ss_pred             HhcCCCC-CcEEeeccccCCCCCCccccHHHHHHHHHHHcc----------CCCCCCCCCcchHHHHHHHHHHHhcCCCC
Q 017967           77 FKADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER----------GENKEYLPIEGLAAFNKVTAELLFGADNS  145 (363)
Q Consensus        77 ~~~~~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (363)
                      |+...+| ++|+|+++++      ....+.+.+.+.+....          ....+|++..|.++||+++|+|+.+.++.
T Consensus        29 ~~~~~np~G~i~l~~aen------~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~  102 (428)
T d1iaya_          29 FHPLKNPNGVIQMGLAEN------QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGG  102 (428)
T ss_dssp             CCSSSSTTSBEECSSCCC------CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTT
T ss_pred             CCCcCCCCceEEeecccC------ccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCC
Confidence            3444555 6999999875      33445555544332110          01146999999999999999999877664


Q ss_pred             --cccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEEecccCCCCCCCHHHHHHH
Q 017967          146 --VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIAD  222 (363)
Q Consensus       146 --~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~  222 (363)
                        .+++++|++  |+|+++++.++  +..++.|||.|++++|+|+.+...+. ..|+++++++++..+++.+|++.++.+
T Consensus       103 ~~~~~~e~Ivi--t~G~~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~  178 (428)
T d1iaya_         103 RVRFDPERVVM--AGGATGANETI--IFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEA  178 (428)
T ss_dssp             CSCCCTTSCEE--EEHHHHHHHHH--HHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHH
T ss_pred             CCCCChhhEEE--cCCHHHHHHHH--HHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccch
Confidence              567899988  99999999988  45567899999999999999998887 568999999987777899999988766


Q ss_pred             HHc---CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh-------c
Q 017967          223 IKA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT-------R  292 (363)
Q Consensus       223 l~~---~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-------~  292 (363)
                      +..   ...++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  .+.++.++.+       .
T Consensus       179 ~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~--~~~s~~~~~~~~~~~~~~  256 (428)
T d1iaya_         179 YENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP--QFVSIAEILDEQEMTYCN  256 (428)
T ss_dssp             HHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS--CCCCHHHHHTSGGGTTSC
T ss_pred             hhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcc--cccccccccchhhccccc
Confidence            532   334577888999999999999999999999999999999999999999998753  3344444432       3


Q ss_pred             CCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          293 GMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       293 ~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      .+++++++||||.|+++|+|+||+  +++++.    +++.++...  .+..++...|.+++..+.+
T Consensus       257 ~~~vi~~~s~SK~~~~~GlRiG~~--~~~~~~----l~~~~~~~~--~~~~~~~~~~~~~~a~l~~  314 (428)
T d1iaya_         257 KDLVHIVYSLSKDMGLPGFRVGII--YSFNDD----VVNCARKMS--SFGLVSTQTQYFLAAMLSD  314 (428)
T ss_dssp             TTSEEEEEESTTTSSCGGGCEEEE--EESCHH----HHHHHHHHH--TTSCCCHHHHHHHHHHTTC
T ss_pred             cceEEEEecCCCcccCCCcccccc--cccccc----hhhhhhhhh--cccccccccccchhhhhhh
Confidence            578999999999999999999999  887776    455555443  3446677777776665543

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.4e-38  Score=297.82  Aligned_cols=267  Identities=12%  Similarity=0.129  Sum_probs=217.8

Q ss_pred             hhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccC
Q 017967           70 ILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKE  149 (363)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~  149 (363)
                      +.++.+.+..   .+.|||++|.|. .    .+++.+++++.+.+.++. ++|++..|.++||+++|+++.+.++..+++
T Consensus        16 ~~~~~~~a~~---~~~i~l~~G~Pd-~----~~p~~i~~a~~~~~~~~~-~~Y~~~~G~~~LReaia~~~~~~~g~~~~~   86 (382)
T d1u08a_          16 FTQMSALAQQ---HQAINLSQGFPD-F----DGPRYLQERLAHHVAQGA-NQYAPMTGVQALREAIAQKTERLYGYQPDA   86 (382)
T ss_dssp             HHHHHHHHHH---TTCEECCCSSCS-S----CCCHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHHHSCCCCT
T ss_pred             HHHHHHHhcc---CCCEEccCCCCC-C----CCCHHHHHHHHHHHhcCC-CCCCCCcCCHHHHHHHHHHHHHHhCCCCCC
Confidence            3344444433   378999999983 2    236788888877776544 789999999999999999998887887777


Q ss_pred             C-cEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCC
Q 017967          150 Q-RVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (363)
Q Consensus       150 ~-~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (363)
                      + +|++  |+|+++++.++  +..++.+||.|++++|+|+.+...+...|..++.++.+ ++.+.+|++++++.+.   +
T Consensus        87 ~~~I~v--t~G~~~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~---~  158 (382)
T d1u08a_          87 DSDITV--TAGATEALYAA--ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDWQEFAALLS---E  158 (382)
T ss_dssp             TTTEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECC-TTTCCCCHHHHHHHCC---T
T ss_pred             CceEEe--ccchHHHHHHH--HhhcccccceEEEecccccchhhhhhhccccceecccc-cccccCCHHHHhhhhc---c
Confidence            6 5988  99999999988  56667899999999999999999999999988888874 4567889999988765   4


Q ss_pred             CcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc
Q 017967          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (363)
Q Consensus       229 ~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l  308 (363)
                      ++++++++|||||||.+++.+++++|+++|++++++++.|++|..+.+.+...  ..........+++|++.|+||.+++
T Consensus       159 ~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~s~SK~~~~  236 (382)
T d1u08a_         159 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGH--ASVLAHPQLRERAVAVSSFGKTYHM  236 (382)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCC--CCGGGSHHHHTTEEEEEEHHHHTTC
T ss_pred             CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccccc--ccccccccccCcEEEEeeccccccC
Confidence            67788889999999999999999999999999999999999999988765322  1211122345789999999999999


Q ss_pred             ccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       309 ~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      +|+|+||+  +++ ++    ++.++.+.......+++.+.|.+++.+++..++|
T Consensus       237 pG~RiG~~--v~~-~~----~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~  283 (382)
T d1u08a_         237 TGWKVGYC--VAP-AP----ISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEH  283 (382)
T ss_dssp             GGGCCEEE--ECC-HH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHH
T ss_pred             Ccccchhh--hcc-ch----hHHHHHhhhcccccccccccccccccccccchHH
Confidence            99999999  776 66    5666666666667899999999999998876665

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.2e-38  Score=300.04  Aligned_cols=274  Identities=15%  Similarity=0.116  Sum_probs=214.1

Q ss_pred             CCCCCCCCchhhHHHHH---hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHH
Q 017967           61 GVTMAPPDPILGVSEAF---KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAE  137 (363)
Q Consensus        61 ~v~~~~~~~~~~~~~~~---~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~  137 (363)
                      ++....+++|.++....   ++.+ .++|+|++|+|. .    .+++.+.+++.+.. .. .++|++..|.++||+++|+
T Consensus         4 r~~~~~~~~i~~l~~~a~~~~~~g-~~vi~l~~G~p~-~----~~p~~~~~al~~~~-~~-~~~Y~~~~G~~~LR~aia~   75 (389)
T d2gb3a1           4 RVLLTEESPIRKLVPFAEMAKKRG-VRIHHLNIGQPD-L----KTPEVFFERIYENK-PE-VVYYSHSAGIWELREAFAS   75 (389)
T ss_dssp             HHHSCCCCTTGGGHHHHHHHHHTT-CEEEECSSCCCC-S----CCCTHHHHHHHHTC-CS-SCCCCCTTCCHHHHHHHHH
T ss_pred             hhhcCCCCHHHHHHHHHHHHHHcC-CCEEECCCCCCC-C----CCCHHHHHHHHhcC-CC-CCCCCCCcCCHHHHHHHHH
Confidence            45556778888875433   3333 378999999973 2    23556677766543 22 3789999999999999999


Q ss_pred             HHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHH
Q 017967          138 LLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFE  217 (363)
Q Consensus       138 ~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~  217 (363)
                      ++...++..+++++|++  |+|+++++.++  +..++.+||.|+++.|+|+.+...++..|++++.++.++. .+..+.+
T Consensus        76 ~~~~~~g~~~~~~~I~i--t~G~~~~l~~~--~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~  150 (389)
T d2gb3a1          76 YYKRRQRVDVKPENVLV--TNGGSEAILFS--FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRME-EGFAIPQ  150 (389)
T ss_dssp             HHHHTSCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGG-GTSCCCT
T ss_pred             HHHHhcCCCcccceEEe--ccccccccccc--ccccccCCCeEEEeCCCCccccccccccCccccccccccc-cccchhh
Confidence            99988899999999988  99999998888  4556789999999999999999999999999999987533 3344444


Q ss_pred             HHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEE
Q 017967          218 GMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELL  297 (363)
Q Consensus       218 ~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi  297 (363)
                      .+.+...   +++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++..   .+.  .....++++
T Consensus       151 ~~~~~~~---~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~---~~~--~~~~~~~~~  222 (389)
T d2gb3a1         151 NLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEF---ASA--LSIESDKVV  222 (389)
T ss_dssp             TGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC---CCG--GGSCCTTEE
T ss_pred             hhhhhcc---cCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccc---ccc--ccccccccc
Confidence            4444333   56788889999999999999999999999999999999999999999987532   111  123557899


Q ss_pred             EEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccccccC
Q 017967          298 VAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGKQRW  362 (363)
Q Consensus       298 ~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~w  362 (363)
                      ++.|+||.++++|+|+||+  +++++.    +.+.+.... ....+++.+.|.++..++...++|
T Consensus       223 v~~s~sK~~~~~GlRiG~~--~~~~~~----i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~  280 (389)
T d2gb3a1         223 VIDSVSKKFSACGARVGCL--ITRNEE----LISHAMKLA-QGRLAPPLLEQIGSVGLLNLDDSF  280 (389)
T ss_dssp             EEEESTTTTTCGGGCCEEE--ECSCHH----HHHHHHHHH-HHSCCCCHHHHHHHHHHHTCCHHH
T ss_pred             ccccccccccCcccceeee--eccchh----HHHHHhhhh-hccccccccccccccccccccchh
Confidence            9999999999999999999  887665    444444443 345577788888888777766554

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=2.2e-37  Score=296.38  Aligned_cols=249  Identities=12%  Similarity=0.105  Sum_probs=196.9

Q ss_pred             CCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh
Q 017967           82 DEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT  161 (363)
Q Consensus        82 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt  161 (363)
                      ..++|+|++|+| |.    .+++.+.+++.+.++.+. ++|+  .|.++||+++|+|+.++++..+++++|++  |+|++
T Consensus        30 g~~vi~l~~g~p-df----~~p~~v~~al~~~~~~~~-~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~v--t~G~~   99 (394)
T d1c7na_          30 GNEVVPLSVADM-EF----KNPPELIEGLKKYLDETV-LGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIIN--TAGVV   99 (394)
T ss_dssp             CTTCCCCCSSSC-SS----CCCHHHHHHHHHHHHHCC-CSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSHH
T ss_pred             CCCeEEccCCCC-CC----CCCHHHHHHHHHHHhCCC-cCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEe--eccch
Confidence            348999999997 32    246777777777665544 6785  37889999999999888888999999988  99999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccC-CCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          162 GSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       162 ~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      +++.++  +..++.|||.|+++.|.|.++...+...|.+.+.++.... ..+.+|.+.++.....  ++++++++|||||
T Consensus       100 ~al~~~--~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l~~P~N  175 (394)
T d1c7na_         100 PAVFNA--VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHN  175 (394)
T ss_dssp             HHHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBT
T ss_pred             hhhhhh--hccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhcc--ccceEEEeccccc
Confidence            999988  5566889999999999999999999999999988876433 3356788888877653  4578899999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHH-HHhcCCeEEEEEcCccccccccccceEEEEe
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRL-FATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      |||.+++.+++++|+++|++++++||+||+|.++.+++...  .+... .....++++++.||||.|+++|+|+||+  +
T Consensus       176 PTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~--~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~--~  251 (394)
T d1c7na_         176 PVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEH--TVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI--I  251 (394)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCC--CCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE--E
T ss_pred             ccceeccHHHhhhhhccccccceeEeccccccccccCCccc--cchhhhhcccccceeecccccccccccccccccc--c
Confidence            99999999999999999999999999999999999875321  11111 1223478999999999999999999999  8


Q ss_pred             eCChhHHHHHHHHHHhhhccccCCCchHHHHHH
Q 017967          320 CSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQ  352 (363)
Q Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~  352 (363)
                      ++++.    +.+.+.+.......+++...|.++
T Consensus       252 ~~~~~----i~~~~~~~~~~~~~~~~~~~~~~a  280 (394)
T d1c7na_         252 IKNPD----IRERFTKSRDATSGMPFTTLGYKA  280 (394)
T ss_dssp             CCCHH----HHHHHHHHHHHTTCCCCCHHHHHH
T ss_pred             ccChh----hhhhhhhhhhhccccccccccchh
Confidence            88777    455555544444444444444333

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=100.00  E-value=1.3e-37  Score=301.57  Aligned_cols=260  Identities=16%  Similarity=0.144  Sum_probs=200.6

Q ss_pred             cCCCC-CcEEeeccccCCCCCCccccHHHHHHHHHHHc------c-----CCCCCCCCCcchHHHHHHHHHHHhcCCC--
Q 017967           79 ADTDE-KKLNLGVGAYRTEELQPYVLDVVKKAENLMLE------R-----GENKEYLPIEGLAAFNKVTAELLFGADN--  144 (363)
Q Consensus        79 ~~~~~-~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------~-----~~~~~Y~~~~G~~~lr~aia~~l~~~~~--  144 (363)
                      ...|| ++|+|+++++      ....+.+.+.+.....      .     ....+|++..|.++||+++|+|+...++  
T Consensus        31 ~~~np~G~i~l~~~en------~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~  104 (431)
T d1m7ya_          31 EVHNTNGIIQMGLAEN------QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNK  104 (431)
T ss_dssp             SSSCTTSBEECSSCCC------CSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTS
T ss_pred             CcCCCCcEEEeecccc------cccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCC
Confidence            34555 6999999885      3345555555433110      0     0114699999999999999999987665  


Q ss_pred             CcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCCCCeEEEecccCCCCCCCHHHHHHHH
Q 017967          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DARVPWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      ..+++++|++  |+|+++++.++  +..++.|||.|++++|+|+.+...++ ..|++++++++++++++.+|++.+++.+
T Consensus       105 ~~~~pe~I~i--t~G~~~al~~~--~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~  180 (431)
T d1m7ya_         105 VTFDPNHLVL--TAGATSANETF--IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAY  180 (431)
T ss_dssp             SCCCGGGEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHH
T ss_pred             CCCCcceEEE--CCCHHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhh
Confidence            4577899988  99999999998  45567899999999999999998887 4689999999977777899999999887


Q ss_pred             Hc---CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHh---------
Q 017967          224 KA---APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFAT---------  291 (363)
Q Consensus       224 ~~---~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~---------  291 (363)
                      .+   ...++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.+++.  .+.++..+..         
T Consensus       181 ~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~--~~~s~~~~~~~~~~~~~~~  258 (431)
T d1m7ya_         181 QEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDENSE  258 (431)
T ss_dssp             HHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHTTTTTCSSSSS
T ss_pred             hhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCC--CCCCHHHHhhhcccccccc
Confidence            64   334577899999999999999999999999999999999999999999998752  3444444422         


Q ss_pred             cCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          292 RGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       292 ~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ..+++++++||||.||++|+|+||+  +++++.    +...+...  ..+.+++...|.+++..+.+
T Consensus       259 ~~~~vi~~~s~SK~~~~~G~RiG~~--~~~~~~----i~~~~~~~--~~~~~~~~~~~~~~~a~l~~  317 (431)
T d1m7ya_         259 VWQRVHVVYSLSKDLGLPGFRVGAI--YSNDDM----VVAAATKM--SSFGLVSSQTQHLLSAMLSD  317 (431)
T ss_dssp             GGGGEEEEEESSSSSCCGGGCEEEE--EESCHH----HHHHHHHH--GGGSCCCHHHHHHHHHHHHC
T ss_pred             cCceEEEEecCcccccCCCCcccee--ccchhh----hHHHHHHH--hccccccccccchhhhhhcc
Confidence            2358999999999999999999999  777554    33333332  33456666777766655443

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4e-37  Score=296.90  Aligned_cols=269  Identities=14%  Similarity=0.174  Sum_probs=212.1

Q ss_pred             CCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCC
Q 017967           66 PPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGAD  143 (363)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~  143 (363)
                      .+++|.++.   +....+++|+|+.|.|. .  ..++.+.+.++...+.+..  ...+|++..|.++||+++|+++.+.+
T Consensus        24 ~~s~ir~~~---~~~~~~~~I~l~~G~Pd-~--~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~   97 (420)
T d1vp4a_          24 KSSIIREIL---KFAADKDAISFGGGVPD-P--ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMY   97 (420)
T ss_dssp             CCCCHHHHT---TTTTSTTCEECCCCSCC-G--GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHH---HHhCCCCcEecCCcCCC-C--ccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHh
Confidence            455665543   33455689999999972 2  2344566777766655321  22689999999999999999998877


Q ss_pred             CCc-ccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHH
Q 017967          144 NSV-LKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIAD  222 (363)
Q Consensus       144 ~~~-~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~  222 (363)
                      +.. +++++|++  |+|+++++.++  +..++.|||.|++++|+|+.|...++..|++++.+|+++   .+++++.++..
T Consensus        98 g~~~~~~~~I~i--t~G~~~al~~~--~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~---~~~~~~~l~~~  170 (420)
T d1vp4a_          98 GITGLDEDNLIF--TVGSQQALDLI--GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED---DGMDLNVLERK  170 (420)
T ss_dssp             CCCSCCGGGEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET---TEECHHHHHHH
T ss_pred             CCCCCCHHHeEe--ccchhhhHHHH--HHhhhccccccccccccccchhHHHHHHhhhcccccccc---cccccchhhhh
Confidence            764 78999988  99999999988  455678999999999999999999999999999999853   47888887765


Q ss_pred             HHc------CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeE
Q 017967          223 IKA------APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (363)
Q Consensus       223 l~~------~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~v  296 (363)
                      +.+      ..+.+.++++++||||||.+++.+++++|+++|+++++++|+||+|.++.+++..  ..+.. .....+++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~--~~~~~-~~~~~~~~  247 (420)
T d1vp4a_         171 LSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGET--VDPIF-KIGGPERV  247 (420)
T ss_dssp             HHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCC--CCCHH-HHHCTTTE
T ss_pred             hhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcc--ccccc-ccccccce
Confidence            432      1234668888999999999999999999999999999999999999999987532  22222 23566889


Q ss_pred             EEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       297 i~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ++++|+||.++ +|+|+||+  +++ ++    +++++.+.......+++.+.|.+++..+..
T Consensus       248 i~~~s~sk~~~-~G~RiG~~--~~~-~~----~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~  301 (420)
T d1vp4a_         248 VLLNTFSKVLA-PGLRIGMV--AGS-KE----FIRKIVQAKQSADLCSPAITHRLAARYLER  301 (420)
T ss_dssp             EEEEESTTTTC-GGGCEEEE--ECC-HH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             eEEeccccccc-cccccccc--ccc-ch----hhhhhhhhhhhccccCchhhhhhhhhhccc
Confidence            99999999885 99999999  665 66    566666666666678999999988776654

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=4.5e-37  Score=294.82  Aligned_cols=266  Identities=13%  Similarity=0.143  Sum_probs=207.1

Q ss_pred             CchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC--CCCCCCCCcchHHHHHHHHHHHhcCCCC
Q 017967           68 DPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG--ENKEYLPIEGLAAFNKVTAELLFGADNS  145 (363)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~~~  145 (363)
                      +.|.++.+.   .+.+++|||+.|.|. .  ..++.+.+++++.+++...  ...+|++..|.++||+++|+|+.+.++.
T Consensus        17 s~ire~~~~---~~~~~~i~l~~G~P~-~--~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~   90 (403)
T d1wsta1          17 SEVRELLKL---VETSDVISLAGGLPA-P--ETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDI   90 (403)
T ss_dssp             HHHHHHHHH---HTSSSCEECCCCCCC-G--GGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHH---hCCCCcEECCCCCCC-c--cccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence            445444332   234689999999973 2  2345678887777765321  2267999999999999999999888888


Q ss_pred             cccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHH----H
Q 017967          146 VLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI----A  221 (363)
Q Consensus       146 ~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~----~  221 (363)
                      .+++++|++  |+|+++++.++  +..++.+||.|++++|+|..|...+...|++++.++.++.   +.+...+.    +
T Consensus        91 ~~~~~~I~i--t~G~~~al~~~--~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~---~~~~~~~~~~~~~  163 (403)
T d1wsta1          91 PMSKVEIMT--VAGSQQALDLI--GRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDK---GMRVDLLEEKLEE  163 (403)
T ss_dssp             CCTTCEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHHHHHHHH
T ss_pred             CCChHHeee--cccchHHHHHH--HHHHhhcCCccccCCCcchhhhHHHhhccccceeEeeccc---CCccccccccchh
Confidence            899999988  99999999998  4445779999999999999999999999999999998643   23333222    3


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      ......+...++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++..  ..++.. .+..+++++++|
T Consensus       164 ~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~--~~~~~~-~~~~~~~i~~~S  240 (403)
T d1wsta1         164 LRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEP--TPPIKH-FDDYGRVIYLGT  240 (403)
T ss_dssp             HHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC--CCCGGG-GCSSSCEEEEEE
T ss_pred             hhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCC--CCcccc-cCCCCcEEEEcc
Confidence            33334456778888999999999999999999999999999999999999999987532  222221 345679999999


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      |||.++ +|+|+||+  +++ ++    +++.+.........+++...|.+.+.++.
T Consensus       241 ~SK~~~-~G~RiG~~--i~~-~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (403)
T d1wsta1         241 FSKILA-PGFRIGWV--AAH-PH----LIRKMEIAKQSIDLCTNTFGQAIAWKYVE  288 (403)
T ss_dssp             STTTTC-GGGCCEEE--EEC-HH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             ccceec-Cccccccc--ccc-hH----HHHHHHHHHhhhccccccchhhhHHhhhh
Confidence            999996 99999999  776 66    56666655556667888888887766543

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.8e-36  Score=282.92  Aligned_cols=249  Identities=17%  Similarity=0.086  Sum_probs=196.7

Q ss_pred             cEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHH
Q 017967           85 KLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (363)
Q Consensus        85 ~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al  164 (363)
                      +|.|++|++ |.    .+++.+.+++.+.+..+. ++|++..| +++|+++++++.++++..+++++|++  |+|+++++
T Consensus         1 ~~~~~~~~~-df----~~p~~i~eal~~~~~~~~-~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G~~~~l   71 (361)
T d1d2fa_           1 LLPFTISDM-DF----ATAPCIIEALNQRLMHGV-FGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVIYMV   71 (361)
T ss_dssp             CEECCSSSC-SS----CCCHHHHHHHHHHHTTCC-CCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHHHHH
T ss_pred             CcCcCCCCC-CC----CCCHHHHHHHHHHHhCCC-CCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEE--eCCHHHHH
Confidence            589999997 32    235678888877765554 68988888 68999999999988899999999988  99999998


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccC-CCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCC
Q 017967          165 RLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDP-KTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTG  243 (363)
Q Consensus       165 ~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG  243 (363)
                      ..+  +..++.|||+|++++|+|++|..+++..|.+++.++.+.. +++.+|++.+++.+.+  +++++++++|||||||
T Consensus        72 ~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l~~p~NPTG  147 (361)
T d1d2fa_          72 SEL--IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQNPTG  147 (361)
T ss_dssp             HHH--HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCTTTC
T ss_pred             HHH--hhhccccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhccc--CCceeEEecccccccc
Confidence            887  4555779999999999999999999999999999987543 3456899999998864  4677888899999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCCh
Q 017967          244 IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSS  323 (363)
Q Consensus       244 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~  323 (363)
                      .+++.+++++|+++|++++++||+||+|.++.+++...  .+..  ....++++++.|+||.++++|+|+||+  +++++
T Consensus       148 ~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~--~~~~--~~~~~~~v~~~s~SK~~~~~g~R~g~~--~~~~~  221 (361)
T d1d2fa_         148 KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPH--IPWS--NVARGDWALLTSGSKSFNIPALTGAYG--IIENS  221 (361)
T ss_dssp             CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCC--CCGG--GTCCSSEEEEECSHHHHTCGGGCCEEE--EECSH
T ss_pred             cccchhhhhhhhhhhhhhheeeeecccccccccccccc--cccc--cccccccccccccccccccccccceee--ecchh
Confidence            99999999999999999999999999999998875322  1221  123578999999999999999999999  66666


Q ss_pred             hHHHHHHHHHHhhhccccCCCchHHHHHHhc
Q 017967          324 DLAARVKSQLKRLARPMYSNPPPMLLGIQLS  354 (363)
Q Consensus       324 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~  354 (363)
                      .........+..  .....+++...+.+...
T Consensus       222 ~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~  250 (361)
T d1d2fa_         222 SSRDAYLSALKG--RDGLSSPSVLALTAHIA  250 (361)
T ss_dssp             HHHHHHHHHHHT--TSCCCSCCHHHHHHHHH
T ss_pred             HHHHHHhhhccc--ccccccchhhhHHHHHH
Confidence            543333333322  22233455555554433

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.9e-35  Score=277.21  Aligned_cols=261  Identities=20%  Similarity=0.161  Sum_probs=206.1

Q ss_pred             CCCCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcC
Q 017967           63 TMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGA  142 (363)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~  142 (363)
                      ...+...+..++.....   .+.|||++|.|. .    .+++.+.+++.+.++.  ..+|++..|.++||+++|+++.  
T Consensus         8 ~~~~~~~~~~~~~la~~---~~~I~ls~g~p~-~----~~p~~i~~al~~~l~~--~~~Y~~~~G~~elr~aiA~~~~--   75 (368)
T d1v2da_           8 EAAKESIFPRMSGLAQR---LGAVNLGQGFPS-N----PPPPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEFA--   75 (368)
T ss_dssp             GGC---CHHHHHHHHHH---HTCEECCCCSCS-S----CCCHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHHT--
T ss_pred             hhcCCCHHHHHHHHhcc---CCCEEecCCCCC-C----CCCHHHHHHHHHHhhc--ccCCCCCcCCHHHHHHHHhhcc--
Confidence            33344444444433333   268999999972 1    2467888888776643  2689999999999999999973  


Q ss_pred             CCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEeccc-CCCCCCCHHHHHH
Q 017967          143 DNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYD-PKTVGLDFEGMIA  221 (363)
Q Consensus       143 ~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~  221 (363)
                          +++++|++  |.|+++++.++  +..++.+||.|+++.|+|..+...++..|.+++.++++. .+.+.+|++.+++
T Consensus        76 ----~~~~~Iii--t~G~~~al~~~--~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~  147 (368)
T d1v2da_          76 ----VEPESVVV--TSGATEALYVL--LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEK  147 (368)
T ss_dssp             ----SCGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHT
T ss_pred             ----cCCcceee--ccchHHHHHHH--hhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHH
Confidence                35789988  99999999988  455577999999999999999999999999998888743 3457899999998


Q ss_pred             HHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEc
Q 017967          222 DIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQS  301 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S  301 (363)
                      .++   +.+.+++++|||||||.+++.+++++|+++|+++|+++|+||+|..+.+....   ....  ....++++++.|
T Consensus       148 ~~~---~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~  219 (368)
T d1v2da_         148 ALT---PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERP---RRLR--EFAPERTFTVGS  219 (368)
T ss_dssp             TCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC---CCHH--HHCTTTEEEEEE
T ss_pred             hhc---cCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccc---cccc--cccccccceeec
Confidence            876   35677888999999999999999999999999999999999999987765421   1111  245578999999


Q ss_pred             CccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          302 YSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       302 ~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +||.++++|+|+||+  +++ ++    +++.+.........+++.+.|.+++.++..
T Consensus       220 ~sk~~~~~G~R~g~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  269 (368)
T d1v2da_         220 AGKRLEATGYRVGWI--VGP-KE----FMPRLAGMRQWTSFSAPTPLQAGVAEALKL  269 (368)
T ss_dssp             HHHHTTCGGGCCEEE--ECC-TT----THHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccc--ccc-cc----ccchhhhhhhcccccccccccccccccccc
Confidence            999999999999999  776 55    466666666667779999999988877653

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.5e-32  Score=258.76  Aligned_cols=257  Identities=16%  Similarity=0.140  Sum_probs=195.5

Q ss_pred             CCCCchhhHHHHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCC
Q 017967           65 APPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADN  144 (363)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~  144 (363)
                      +++..+.+..+++...+. ++|||+.|++.     ..+++.+.+++.+.... . ..| |..|..+||+++|+++.    
T Consensus         5 ~hgg~~~~~~~~~g~~p~-~~idls~~~np-----~~~p~~~~~a~~~~~~~-~-~~Y-p~~~~~~Lr~aia~~~~----   71 (355)
T d1lc5a_           5 AHGGNIREPATVLGISPD-QLLDFSANINP-----LGMPVSVKRALIDNLDC-I-ERY-PDADYFHLHQALARHHQ----   71 (355)
T ss_dssp             SSSCCCHHHHHHHTSCGG-GSEECSSCCCT-----TCCCHHHHHHHHHTGGG-G-GSC-CCTTCHHHHHHHHHHHT----
T ss_pred             CCCCHHHHHHHHhCCChh-heEEccCCCCC-----CCCCHHHHHHHHHHHHH-h-ccC-CCCChHHHHHHHHHHhC----
Confidence            456667777777765544 79999998752     12357777777765533 2 557 66677999999999973    


Q ss_pred             CcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHH
Q 017967          145 SVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (363)
Q Consensus       145 ~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (363)
                        +++++|++  +.|+++++.++.   ..+ .|+.++|..|.|..|.......+.+++.+++..++++.++ +.+++.+.
T Consensus        72 --v~~~~I~~--~~g~~~~~~~~~---~~~-~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~  142 (355)
T d1lc5a_          72 --VPASWILA--GNGETESIFTVA---SGL-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALT  142 (355)
T ss_dssp             --SCGGGEEE--ESSHHHHHHHHH---HHH-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCC
T ss_pred             --CCHHHEEe--cccHHHHHHHHH---hhh-ccccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccc
Confidence              34789988  999999877662   223 4677778889999999999999999999998655556555 44555544


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcc
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSK  304 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  304 (363)
                         +++++++++|||||||.+++.+++++|+++|+++++++|+||+|.+|.+....  ..   .+....+++++++||||
T Consensus       143 ---~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~--~~---~~~~~~~~~i~~~S~SK  214 (355)
T d1lc5a_         143 ---PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETG--FI---PALKDNPHIWVLRSLTK  214 (355)
T ss_dssp             ---TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCC--SG---GGCTTCTTEEEEEESTT
T ss_pred             ---cccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeeccc--cc---ccccccccceeeccccc
Confidence               35667788999999999999999999999999999999999999998876421  11   12345679999999999


Q ss_pred             ccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          305 NLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       305 ~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      .||++|+|+||+  +++++.    +.+.+++..  ...+.+.++|.++..+|++.
T Consensus       215 ~~~l~GlR~G~~--i~~~~~----~~~~~~~~~--~~~~~~~~~~~~a~~~l~~~  261 (355)
T d1lc5a_         215 FYAIPGLRLGYL--VNSDDA----AMARMRRQQ--MPWSVNALAALAGEVALQDS  261 (355)
T ss_dssp             TTTCTTTCCEEE--ECCCHH----HHHHHHHHS--CTTCSCHHHHHHHHHGGGCH
T ss_pred             ccccccccccce--eccchh----hhHHHHhhc--CCcccccccccccccccccc
Confidence            999999999999  888665    444454432  23578899999998888754

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.98  E-value=1.1e-31  Score=250.97  Aligned_cols=230  Identities=16%  Similarity=0.113  Sum_probs=176.4

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .++|.|++|++.    . .+++.+.+++.+.+.... .+|.|..|.++||+++|+++... +  +++++|++  |+|+++
T Consensus        19 ~d~~~l~~~enp----~-~~p~~i~~~~~~~~~~~~-~~~yp~~g~~~Lr~aia~~~~~~-~--v~~d~I~i--t~G~~~   87 (334)
T d2f8ja1          19 RDKTYLALNENP----F-PFPEDLVDEVFRRLNSDA-LRIYYDSPDEELIEKILSYLDTD-F--LSKNNVSV--GNGADE   87 (334)
T ss_dssp             CCSEECSSCCCS----S-CCCHHHHHHHHHHCCTTG-GGSCCCSSCHHHHHHHHHHHTCS-S--CCGGGEEE--EEHHHH
T ss_pred             CCceEEECCCCC----C-CCCHHHHHHHHHHhhcch-hcCCCCCCcHHHHHHHHHHhccc-C--CCcceEEe--cCcchh
Confidence            489999999852    2 234666666666554443 55668889999999999998654 2  57899988  999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCC
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPT  242 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPT  242 (363)
                      ++.++      +.+||+|++++|+|..|...++..|++++.+|++++  +..+ +    .   ..++++++++|||||||
T Consensus        88 ~l~~l------~~~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~--~~~~-~----~---~~~~~~~l~l~nP~NPt  151 (334)
T d2f8ja1          88 IIYVM------MLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD--LRIP-E----V---NVGEGDVVFIPNPNNPT  151 (334)
T ss_dssp             HHHHH------HHHSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTT--SCCC-C----C---CCCTTEEEEEESSCTTT
T ss_pred             HHHHH------hhhccccccccccccccccchhccCCcccccccccc--cccc-c----c---ccccceEEEeccccccc
Confidence            97766      235799999999999999999999999999998542  2222 1    1   12356788889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCC
Q 017967          243 GIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       243 G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~  322 (363)
                      |.+++.+++.+    +.++++++|+||+|.++.+...   ...    ....+++++++||||.++++|+|+||+  +++ 
T Consensus       152 G~~~s~~~l~~----~~~~~~~ii~Dd~~~~~~~~~~---~~~----~~~~~~~i~~~S~SK~~~~~G~R~G~~--~~~-  217 (334)
T d2f8ja1         152 GHVFEREEIER----ILKTGAFVALDEAYYEFHGESY---VDF----LKKYENLAVIRTFSKAFSLAAQRVGYV--VAS-  217 (334)
T ss_dssp             CCCCCHHHHHH----HHTTTCEEEEECTTGGGTCCCC---GGG----GGTCSSEEEEEESTTTSSCTTTCEEEE--EEC-
T ss_pred             ceeecHHHhhc----cccceeEEeecccchhhccccc---ccc----cccCceEEEEecCccccchhhhhhhhc--ccc-
Confidence            99999888766    3568999999999988765431   111    245689999999999999999999999  776 


Q ss_pred             hhHHHHHHHHHHhhhccccCCCchHHHHHHhcccccc
Q 017967          323 SDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNGK  359 (363)
Q Consensus       323 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~  359 (363)
                      ++    +++++.....  ..+.+.++|.++...++..
T Consensus       218 ~~----~i~~l~~~~~--~~~~s~~~~~~a~~~l~~~  248 (334)
T d2f8ja1         218 EK----FIDAYNRVRL--PFNVSYVSQMFAKVALDHR  248 (334)
T ss_dssp             HH----HHHHHHHHSC--TTCSCHHHHHHHHHHHHTH
T ss_pred             hH----HHHHHHHhhc--ccccchhhhhhcccccccc
Confidence            66    6666666643  4578899999887776543

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.1e-30  Score=244.11  Aligned_cols=229  Identities=17%  Similarity=0.194  Sum_probs=174.7

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      .+.|.|+.+++.  .+.   .+.+.        .....+| |..+..+||+++|+++.      +++++|++  |+|+++
T Consensus        27 ~~~i~L~~ne~p--~~~---~~~~~--------~~~l~rY-Pd~~~~~Lr~~ia~~~g------v~pe~I~i--t~Gs~e   84 (354)
T d1fg7a_          27 NGDVWLNANEYP--TAV---EFQLT--------QQTLNRY-PECQPKAVIENYAQYAG------VKPEQVLV--SRGADE   84 (354)
T ss_dssp             TCSEECSSCCCS--SCC---CCCCC--------CCCTTSC-CCSSCHHHHHHHHHHHT------SCGGGEEE--ESHHHH
T ss_pred             CCCEEeeCCCCC--CCC---CHHHH--------HHHHhcC-CCCcHHHHHHHHHHHhC------CChHHeee--ccCchH
Confidence            367899887752  111   11111        1223568 55566899999999962      45899988  999999


Q ss_pred             HHHHHHHHHHHhCCCC-EEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCC
Q 017967          163 SLRLAAALIERYFPGA-KVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNP  241 (363)
Q Consensus       163 al~l~~~l~~~~~~gd-~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NP  241 (363)
                      ++.++  +..++.||| .|+++.|+|..|...++..|.+++.++.  .+++.+|++.+++.+.    +++++++||||||
T Consensus        85 ai~~~--~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~--~~~~~~d~~~l~~~~~----~~~~v~~~~pnNP  156 (354)
T d1fg7a_          85 GIELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPT--LDNWQLDLQGISDKLD----GVKVVYVCSPNNP  156 (354)
T ss_dssp             HHHHH--HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCC--CTTSCCCHHHHHTSCT----TEEEEEEESSCTT
T ss_pred             HHHHH--HHHhhccccccccccccccccchhhhhccCceeecccc--ccccccchhhhhhccc----ccceeeccCCCcc
Confidence            99998  445577998 6899999999999999999999999987  3578999999876543    5778899999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          242 TGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       242 TG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ||.+++.++++.+.+.++ ++.++|+||+|.+|.++..   ..   ......+++++++||||.||++|+|+||+  +++
T Consensus       157 tG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~---~~---~~~~~~~~~iv~~S~SK~~~laGlRiGy~--i~~  227 (354)
T d1fg7a_         157 TGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQAS---LA---GWLAEYPHLAILRTLSKAFALAGLRCGFT--LAN  227 (354)
T ss_dssp             TCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGC---SG---GGTTTCTTEEEEEESSSTTCCGGGCCEEE--EEC
T ss_pred             ceeEeeeccccccccccc-ccccccccccchhhccccc---cc---hhhcccccceEEeCCccccCCCccccccc--ccc
Confidence            999999999999888765 6788999999999875421   11   12356789999999999999999999999  775


Q ss_pred             ChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          322 SSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       322 ~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       ++    +++.+.+...  ..+.+.+.|.+++.++.
T Consensus       228 -~~----~i~~l~~~~~--~~~~~~~~~~~a~~~~~  256 (354)
T d1fg7a_         228 -EE----VINLLMKVIA--PYPLSTPVADIAAQALS  256 (354)
T ss_dssp             -HH----HHHHHHHHSC--SSCSCHHHHHHHHHHTS
T ss_pred             -ch----hhhhhhhhcC--ccchhhHHHHHHHHHHh
Confidence             66    5666666544  33566667766655443

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.95  E-value=5.4e-28  Score=231.94  Aligned_cols=228  Identities=14%  Similarity=0.096  Sum_probs=166.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHH-H-HccC-CCCCCCCCcc----hHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENL-M-LERG-ENKEYLPIEG----LAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~-~-~~~~-~~~~Y~~~~G----~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      ..+|++.|+|      .+..+-.++.... . +..+ +...|....+    .++|+++|+++.....+...+..+|++  
T Consensus        57 ~~~~~~~gdp------~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~Ivv--  128 (425)
T d2hoxa1          57 CSADVASGDG------LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF--  128 (425)
T ss_dssp             CCEECCSCCC------GGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE--
T ss_pred             ceeeCCCCCC------CCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEE--
Confidence            6899999986      2222322222211 1 1222 2244544322    389999999987666666666667988  


Q ss_pred             ccchhHHHHHHHHHHHH--------hCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCC
Q 017967          157 GLSGTGSLRLAAALIER--------YFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPG  228 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~--------~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  228 (363)
                      ++|++++++++  +..+        +.|||+|+++.|+|+.|....+..|.+...+.        +|.+.++++++   +
T Consensus       129 G~Gsteli~~~--~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~--------~D~~~~~~~~~---~  195 (425)
T d2hoxa1         129 GVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA--------GNAANYVNVSN---P  195 (425)
T ss_dssp             ESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEE--------EEGGGGTTCSC---G
T ss_pred             CCCHHHHHHHH--HHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCccC--------CCHHHHHhhCC---C
Confidence            99999999888  4444        46899999999999999999998888766554        45566655544   3


Q ss_pred             CcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc
Q 017967          229 GSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (363)
Q Consensus       229 ~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l  308 (363)
                      +++++++||||||||.+..          +..+++.+|.||+|.+..+.+.          ....+++|+++||||.||+
T Consensus       196 ~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~~----------~~~~~~~Ivl~S~SK~fgl  255 (425)
T d2hoxa1         196 EQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPI----------KYKADEDILLFTMSKFTGH  255 (425)
T ss_dssp             GGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSCC----------CSCBCCSEEEEEHHHHTSC
T ss_pred             CceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccccch----------hhhcCCeEEEEeCHHhccC
Confidence            5789999999999998742          3346899999999976555421          2345789999999999999


Q ss_pred             ccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       309 ~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +|+|+||+  ++++++    +.+++.+....+..++|.++|.+++.+|+.
T Consensus       256 aGlRiGw~--i~~~~~----i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~  299 (425)
T d2hoxa1         256 SGSRFGWA--LIKDES----VYNNLLNYMTKNTEGTPRETQLRSLKVLKE  299 (425)
T ss_dssp             GGGCCEEE--EECCHH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             cchheeeE--EeCCHH----HHHHHHHhhccCcccCCHHHHHHHHHHhhc
Confidence            99999998  788887    556666666667789999999998887754

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.85  E-value=1.6e-20  Score=175.61  Aligned_cols=166  Identities=14%  Similarity=0.012  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecc
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYY  207 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~  207 (363)
                      ...+++.+|+++..        +++++  |+||++|+.++  +..++.|||.|+++.++|......++..|++++.+|.+
T Consensus        49 ~~~~~~~~A~~~g~--------e~~~~--t~g~t~a~~~~--~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~  116 (364)
T d2e7ja1          49 HDFIHNQLPKFLGC--------DVARV--TNGAREAKFAV--MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKT  116 (364)
T ss_dssp             HHHHHTHHHHHTTS--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCC
T ss_pred             HHHHHHHHHHHhCc--------CEEEE--ECcHHHHHHHH--HHHHhCCCcEEEeecccccccchHHHhccceEEEeeec
Confidence            45678899998532        57777  99999998887  56678899999999999988888889999999999987


Q ss_pred             cCCCCCCCHHHHHHHHHcCC--CCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhH
Q 017967          208 DPKTVGLDFEGMIADIKAAP--GGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (363)
Q Consensus       208 ~~~~~~~d~~~l~~~l~~~~--~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  285 (363)
                      +..++.+|++.+++.+++..  .+.+++++++|+||||.+.+   +++|+++|++||+++++|++|......   .   .
T Consensus       117 ~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~---~---~  187 (364)
T d2e7ja1         117 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP---V---S  187 (364)
T ss_dssp             CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC---C---C
T ss_pred             cccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhhh---h---c
Confidence            66778999999999997632  33567888999999999987   556788899999999999998543322   1   1


Q ss_pred             HHHHHhcCCeEEEEEcCccccccccccceEEEEeeC
Q 017967          286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       286 ~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~  321 (363)
                      ...+    ...+++.|++|.++.+| ++||+  ++.
T Consensus       188 ~~~~----g~D~~~~S~~K~~~~~g-~~g~l--~~~  216 (364)
T d2e7ja1         188 LKEI----GADFIVGSGHKSMAASG-PIGVM--GMK  216 (364)
T ss_dssp             HHHH----TCSEEEEEHHHHSSCCS-SCEEE--EEC
T ss_pred             cccc----ccceeeeccccccCCCC-CEEEE--EEC
Confidence            2222    23377889999999666 79999  665

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.84  E-value=1.3e-20  Score=177.49  Aligned_cols=230  Identities=11%  Similarity=0.066  Sum_probs=159.8

Q ss_pred             HHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           76 AFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        76 ~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      ..+......+++++....     .+.+.+...+.    .+    ..+.+..+.+++++..++++....     .+++++ 
T Consensus        13 ~i~~~g~~~i~~~~gl~~-----~~~~~~~~~~~----~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~e~~~~-   73 (366)
T d2aeua1          13 ILNEKGRDALYDLSGLSG-----GFLIDEKDKAL----LN----TYIGSSYFAEKVNEYGLKHLGGDE-----NDKCVG-   73 (366)
T ss_dssp             HHHHTCGGGCEECSSCCC-----CCCCCHHHHHH----HT----STTHHHHHHHHHHHHHHHHHTCCT-----TEEEEE-
T ss_pred             HhchhccchHhhhccCCC-----CCCccHHHHHH----HH----HhcCchhhHHHHHHHHHHHccCCC-----ccEEEE-
Confidence            344445446778864332     12233333333    21    223455678889999888876542     467766 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEE-c-CCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEE
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLI-S-SPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFIL  233 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv-~-~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~  233 (363)
                       |+||++|+..+  +.. +.+||.|++ + .|+|..+...++..|++++  +.       -|+++++++++   ++++++
T Consensus        74 -~~~~~~a~~~~--l~a-l~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v--~~-------~d~e~l~~~i~---~~tk~i  137 (366)
T d2aeua1          74 -FNRTSSAILAT--ILA-LKPKKVIHYLPELPGHPSIERSCKIVNAKYF--ES-------DKVGEILNKID---KDTLVI  137 (366)
T ss_dssp             -ESSHHHHHHHH--HHH-HCCSEEEEECSSSSCCTHHHHHHHHTTCEEE--EE-------SCHHHHHTTCC---TTEEEE
T ss_pred             -eCCHHHHHHHH--HHH-hCCCCEEEEecCCCcchhHHHHHHhcCCeEE--CC-------CCHHHHHHhcC---CCceEE
Confidence             99999998766  444 567766654 3 5899999999999998754  32       16888888776   468888


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccc
Q 017967          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (363)
Q Consensus       234 ~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv  313 (363)
                      ++++|+||+  +++.+++++|+++|+++|+++|+||+|....++....  ....   +. ...+++.|+||.++  |+|+
T Consensus       138 ~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~--~~~~---~~-~~di~~~S~sK~~~--g~~~  207 (366)
T d2aeua1         138 ITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQ--PPAL---KL-GADLVVTSTDKLME--GPRG  207 (366)
T ss_dssp             EECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTC--CCHH---HH-TCSEEEEETTSSSS--SCSC
T ss_pred             EEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccccccC--CCHh---hc-CceEEEeccccccc--ccce
Confidence            889999996  4678899999999999999999999997654432111  1111   12 23478899999764  9999


Q ss_pred             eEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          314 GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       314 G~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ||+  +++ ++    +++.++...+....+++++.|.++...|+
T Consensus       208 G~i--~~~-~~----~i~~~~~~~~~~g~~~~~~~~~a~~~aL~  244 (366)
T d2aeua1         208 GLL--AGK-KE----LVDKIYIEGTKFGLEAQPPLLAGIYRALK  244 (366)
T ss_dssp             EEE--EEE-HH----HHHHHHHHHHTTTCBCCHHHHHHHHHHHH
T ss_pred             eEE--Eec-HH----HHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence            999  665 66    56666666666777888899988876654

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=7.6e-17  Score=152.32  Aligned_cols=194  Identities=14%  Similarity=0.055  Sum_probs=142.9

Q ss_pred             cCCCCCCccccHHHHHHHHHHHccCCCCCCCCC------------cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccch
Q 017967           93 YRTEELQPYVLDVVKKAENLMLERGENKEYLPI------------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSG  160 (363)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~------------~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~gg  160 (363)
                      |.|..+..++++.|.+++.+.....  ..|+.+            .-+.++|+.+|+++...      +++|++  |.|+
T Consensus         5 YlD~aa~~p~~~~v~ea~~~~~~~~--~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~------~~~I~~--~~~~   74 (391)
T d1p3wa_           5 YLDYSATTPVDPRVAEKMMQFMTMD--GTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD------PREIVF--TSGA   74 (391)
T ss_dssp             ECBTTTCCCCCHHHHHHHHTTTSTT--SCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC------GGGEEE--ESSH
T ss_pred             EeeCccccCCCHHHHHHHHHHHHhc--cccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCC------CCcEEE--ECCH
Confidence            4556666778899999988776432  223321            11346888999997543      689988  9999


Q ss_pred             hHHHHHHHHHHH--HhCCCCEEEEcCCCCcchHHHH---hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEE
Q 017967          161 TGSLRLAAALIE--RYFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLH  235 (363)
Q Consensus       161 t~al~l~~~l~~--~~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i  235 (363)
                      |+++..+...+.  .+.+||.|++.++.|+.+...+   +..|+++..++.+  .++.+|++.++++++   ++++++++
T Consensus        75 t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~~~~~i~---~~T~lv~i  149 (391)
T d1p3wa_          75 TESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ--RNGIIDLKELEAAMR---DDTILVSI  149 (391)
T ss_dssp             HHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC--TTSCCCHHHHHHHCC---TTEEEEEC
T ss_pred             HHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCC--CCCeEcHHHHHHhCC---CCcEEEEE
Confidence            999888744322  2469999999999998876554   4679999999984  456789999999987   46889999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceE
Q 017967          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       236 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~  315 (363)
                      ++++||||..++.+   +|.++|+++|+++++|.++..-... .  +.       ......+++.|..|.+|.+|  +|+
T Consensus       150 s~~~n~tG~~~~~~---~I~~~~~~~~~~~ivD~~~~~g~~~-~--d~-------~~~~~D~~~~s~~k~~g~~g--~g~  214 (391)
T d1p3wa_         150 MHVNNEIGVVQDIA---AIGEMCRARGIIYHVDATQSVGKLP-I--DL-------SQLKVDLMSFSGHKIYGPKG--IGA  214 (391)
T ss_dssp             CSBCTTTCCBCCHH---HHHHHHHHHTCEEEEECTTTBTTBC-C--CT-------TTSCCSEEEEESTTTTSCSS--CEE
T ss_pred             ECCCCCCeeECCHH---HHHHHhccCCcEEEEeeccccCCcc-c--cc-------hhccccccccccccccCCCc--eEE
Confidence            99999999999865   5677799999999999997543321 1  11       11233467789999988666  466


Q ss_pred             E
Q 017967          316 M  316 (363)
Q Consensus       316 i  316 (363)
                      +
T Consensus       215 ~  215 (391)
T d1p3wa_         215 L  215 (391)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=4.5e-14  Score=132.14  Aligned_cols=200  Identities=11%  Similarity=-0.033  Sum_probs=142.9

Q ss_pred             cCCCCCCccccHHHHHHHHHHHccCCCCCCCC-------CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHH
Q 017967           93 YRTEELQPYVLDVVKKAENLMLERGENKEYLP-------IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (363)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (363)
                      |.|..+..++++.|.+++.+........-...       .....+.|+++|+++...      +++|++  +.|+|+++.
T Consensus         4 yld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~------~~~i~~--~~~~T~~l~   75 (376)
T d1eg5a_           4 YFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVS------PSEIFF--TSCATESIN   75 (376)
T ss_dssp             ECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSC------GGGEEE--ESCHHHHHH
T ss_pred             EEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCC------CCcEEE--ECCHHHHHH
Confidence            44455556678888888877764321000000       111345688999997543      789988  999999998


Q ss_pred             HHHHHHH--HhCCCCEEEEcCCCCcchHHHH---hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCC
Q 017967          166 LAAALIE--RYFPGAKVLISSPTWGNHKNIF---NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHN  240 (363)
Q Consensus       166 l~~~l~~--~~~~gd~Vlv~~P~y~~~~~~~---~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~N  240 (363)
                      ++...+.  ...+|+.|++....|+.+...+   +..|++++.+|++  .++.+|+++++++++   +++++++++.++|
T Consensus        76 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~--~~~~id~~~l~~~i~---~~t~lv~is~v~~  150 (376)
T d1eg5a_          76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD--SRGVVKLEELEKLVD---EDTFLVSIMAANN  150 (376)
T ss_dssp             HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC--TTSCBCHHHHHHHCC---TTEEEEEEESBCT
T ss_pred             hhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCC--CCCeECHHHHHHhcC---CCceEEEEECCcc
Confidence            8854332  2347889999988887776554   5679999999984  467899999999987   4688999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          241 PTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       241 PTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      +||..++.+++.+++. +++.++++++|.+...-... .  +       +...+..+++.|+.|.+|.+|.+++|+
T Consensus       151 ~tG~~~~~~~i~~~~~-~~~~~~~~~vD~~q~~g~~~-~--d-------~~~~~~D~~~~s~~K~~gp~G~~~l~~  215 (376)
T d1eg5a_         151 EVGTIQPVEDVTRIVK-KKNKETLVHVDAVQTIGKIP-F--S-------LEKLEVDYASFSAHKFHGPKGVGITYI  215 (376)
T ss_dssp             TTCBBCCHHHHHHHHH-HHCTTCEEEEECTTTTTTSC-C--C-------CTTTCCSEEEEEGGGGTSCTTCEEEEE
T ss_pred             ccceeeeehhhhhhhh-hcccCceeEEEeeecccccc-c--c-------ccccCccceecccceeecCCCceeEEe
Confidence            9999999988877754 34458999999884332211 1  0       122244588999999999888877776

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.56  E-value=1.6e-14  Score=135.45  Aligned_cols=162  Identities=12%  Similarity=0.009  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCEEEEcCCCCcchHH----HHhhCCCCeE
Q 017967          128 LAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKVLISSPTWGNHKN----IFNDARVPWS  202 (363)
Q Consensus       128 ~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~  202 (363)
                      ..++|+.+|+++..      ++++|++  |.|+|++++++  +..+ +.+||.|+++++.|+....    ..+..|++++
T Consensus        52 ~~~~r~~la~~~~~------~~~~i~~--~~g~t~a~~~~--~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~  121 (381)
T d1elua_          52 IAQLRQALAETFNV------DPNTITI--TDNVTTGCDIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYR  121 (381)
T ss_dssp             HHHHHHHHHHHTTS------CGGGEEE--ESSHHHHHHHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEE
T ss_pred             HHHHHHHHHHHhCC------CcccEEE--ECChHHHhhhc--chhhhhcCCceEEEeccccceeeecccccccccccccc
Confidence            34678888888643      2678988  99999999888  3443 4599999999999976544    4456799999


Q ss_pred             EEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHh----cCCeEEEecCCCCCcCCC
Q 017967          203 EYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE----KNHIPFFDVAYQGFASGS  278 (363)
Q Consensus       203 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~----~~~~ii~De~y~~~~~~~  278 (363)
                      .+|..+......+.+.+++.++   +++++++++++|||||..++.+++.+   +|++    +++++++|.++..-... 
T Consensus       122 ~v~~~~~~~~~~~~~~l~~~i~---~~t~~v~i~~~~n~tG~~~~~~~I~~---l~~~~~~~~~~~~~vD~~~~~g~~~-  194 (381)
T d1elua_         122 FFPVAATLNQGDAAAVLANHLG---PKTRLVILSHLLWNTGQVLPLAEIMA---VCRRHQGNYPVRVLVDGAQSAGSLP-  194 (381)
T ss_dssp             EECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBCTTTCCBCCHHHHHH---HHHHCCSSSCCEEEEECTTTBTTBC-
T ss_pred             ccccccccccchHHHHHHhhhc---ccccccccccccccccccchhhHHHH---HHhhccccccccccccccccccccc-
Confidence            9987533222222444444443   46789999999999999999876555   4666    46899999986533221 


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      .     .    .+...-.+++.|+.|.++ ...++|++
T Consensus       195 ~-----~----~~~~~~D~~~~s~~K~~~-~p~G~g~l  222 (381)
T d1elua_         195 L-----D----FSRLEVDYYAFTGHKWFA-GPAGVGGL  222 (381)
T ss_dssp             C-----C----TTTSCCSEEEEESSSTTC-CCTTCEEE
T ss_pred             c-----c----cccccccccccccccccc-ccchhhHH
Confidence            1     0    122234588899999987 44567877

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.5e-12  Score=120.70  Aligned_cols=211  Identities=14%  Similarity=0.081  Sum_probs=148.2

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHcc------CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEec
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLER------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQG  157 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~------~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t  157 (363)
                      ..+||+...|.....+    |.+.++..+.++.      ....-++...-+.+|.+.+|+|+..        +..++  +
T Consensus        39 ~~l~f~s~dYLGl~~~----p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~--------e~al~--~  104 (383)
T d1bs0a_          39 QYLNFSSNDYLGLSHH----PQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGY--------SRALL--F  104 (383)
T ss_dssp             EEEECSCCCTTSGGGC----HHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC--------SEEEE--E
T ss_pred             EEEEEEcccccccCCC----HHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCC--------CceEE--e
Confidence            6899988776533223    3444444444321      1112233445568999999999633        56655  7


Q ss_pred             cchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcC
Q 017967          158 LSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGC  237 (363)
Q Consensus       158 ~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~  237 (363)
                      ++|..+...+  +..+..++|.|++..-.+......++..+.+++.++-       .|.+.+++.+.+.++...++++..
T Consensus       105 ~SG~~an~~~--i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~~~~~~~vv~e~  175 (383)
T d1bs0a_         105 ISGFAANQAV--IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEG  175 (383)
T ss_dssp             SCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEES
T ss_pred             cccchhhHHH--HHhhcCCCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhcccCCCceEEEecC
Confidence            8888887666  5556779999999999998888888888888877763       588999999988766778888899


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          238 AHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       238 p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                      ..+.+|.+.+.+++   +++|++||.++++||++.....+.   ........... ...+++.+|+|.+|..|   |++ 
T Consensus       176 v~s~~G~i~pl~~l---~~l~~~~~~~livDeah~~gv~G~---~g~G~~~~~~~-~~~~~~~t~~ka~g~~G---g~v-  244 (383)
T d1bs0a_         176 VFSMDGDSAPLAEI---QQVTQQHNGWLMVDDAHGTGVIGE---QGRGSCWLQKV-KPELLVVTFGKGFGVSG---AAV-  244 (383)
T ss_dssp             BCTTTCCBCCHHHH---HHHHHHTTCEEEEECTTTTTTSSG---GGCCHHHHTTC-CCSEEEEESSSTTSSCC---EEE-
T ss_pred             CCCCCCcccchhHH---HHHHHhcCcEEEeecceeeeecCC---cccchHHHcCC-ccccccccccccccccc---ccc-
Confidence            99999999986665   556999999999999987776652   22222233232 45556789999998765   777 


Q ss_pred             EeeCChhHHHHHH
Q 017967          318 VVCSSSDLAARVK  330 (363)
Q Consensus       318 ~v~~~~~~~~~~~  330 (363)
                       .+. .+.++.++
T Consensus       245 -~~~-~~~~~~l~  255 (383)
T d1bs0a_         245 -LCS-STVADYLL  255 (383)
T ss_dssp             -EEC-HHHHHHHH
T ss_pred             -ccc-hhHHHHHH
Confidence             454 66444343

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.49  E-value=4e-12  Score=118.66  Aligned_cols=219  Identities=14%  Similarity=0.140  Sum_probs=151.4

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g  177 (363)
                      .+.++...+...........+.|+.  ......|.+.+|++..+        +..++  +++|..|+..+  ++.++.+|
T Consensus        35 T~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg--------~~a~~--~sSGmaAi~~~--l~~ll~~G  102 (397)
T d1y4ia1          35 TFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG--------EAGLA--TASGISAITTT--LLTLCQQG  102 (397)
T ss_dssp             CCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTT
T ss_pred             CeeeCCHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCC--------cccee--ehHHHHHHHHH--HhhccCCC
Confidence            4445555544433332222244543  45567888889888533        33444  79999998777  67778999


Q ss_pred             CEEEEcCCCCcchHHHH----hhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          178 AKVLISSPTWGNHKNIF----NDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       178 d~Vlv~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      |+|+++...|.+....+    .+.|+++..++.       -|++.++++++   ++++++++-+|.|||..+..   +++
T Consensus       103 d~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~-------~d~~~~~~~i~---~~Tklv~~Esp~NP~l~v~D---i~~  169 (397)
T d1y4ia1         103 DHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------GKPEEIRAAMR---PETKVVYIETPANPTLSLVD---IET  169 (397)
T ss_dssp             CEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHH
T ss_pred             CeeeeecccccccchhhhcccCCCceEeeccCC-------CCHHHHHHhcC---CCCcEEEecCCcccceeecc---cHH
Confidence            99999999998876655    478999988864       36899999886   46888888999999988875   556


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHH
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQL  333 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l  333 (363)
                      |+++|+++|+++++|+.|.....-.      +    ++.+ -.|+++|.+|.++--+--+|.+  ++.+++.+.+.  ++
T Consensus       170 i~~iA~~~gi~~vvDnT~atP~~~~------P----l~~G-aDivihS~TKyi~Ghsdvl~G~--v~~~~~~~~~~--r~  234 (397)
T d1y4ia1         170 VAGIAHQQGALLVVDNTFMSPYCQQ------P----LQLG-ADIVVHSVTKYINGHGDVIGGI--IVGKQEFIDQA--RF  234 (397)
T ss_dssp             HHHHHHHTTCEEEEECTTTCTTTCC------G----GGGT-CSEEEEETTTTTTCSSCCCCEE--EEECHHHHHHH--HH
T ss_pred             HHHHhhcCCceEEecCcccCcccCc------c----hhcC-CCEEEEehhhhcCCCcceeeec--cCCCHHHHHHH--HH
Confidence            7777999999999999987543321      1    1222 3488999999997666667776  45556633322  12


Q ss_pred             HhhhccccCCCchHHHHHHhccccc
Q 017967          334 KRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       334 ~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      ..+........+++...++.+.|+.
T Consensus       235 ~~~~~~~G~~l~p~~a~l~~rgl~T  259 (397)
T d1y4ia1         235 VGLKDITGGCMSPFNAWLTLRGVKT  259 (397)
T ss_dssp             THHHHTTCCCCCHHHHHHHHHHHTT
T ss_pred             HHHHhCcCCcCCHHHHHHHHcCcCc
Confidence            2222334667888888888776653

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.47  E-value=1.4e-12  Score=121.79  Aligned_cols=193  Identities=18%  Similarity=0.184  Sum_probs=137.7

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (363)
                      ......|.+.+|++..+        +..++  +.+|.+|+..+  ++.++.+||+|+++...|.+....++    +.|++
T Consensus        58 nPT~~~LE~~la~LEg~--------~~a~~--~~SGmaAi~~~--l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~  125 (392)
T d1gc0a_          58 NPTLNLLEARMASLEGG--------EAGLA--LASGMGAITST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVK  125 (392)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCE
T ss_pred             ChHHHHHHHHHHHHhCC--------cceee--hhhHHHHHHHH--HHhhccCCCeeecccccchhhhhhhhhhhccCCcc
Confidence            45677899999998533        34545  89999998777  67778899999999999988877664    66988


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      +..++.       .|++.++++++   ++++++++-+|.|||..+.+   +++|+++|+++|+++++|+.|..-..-.  
T Consensus       126 ~~~~d~-------~d~~~~~~ai~---~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~~--  190 (392)
T d1gc0a_         126 LRHVDM-------ADLQALEAAMT---PATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR--  190 (392)
T ss_dssp             EEEECT-------TCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC--
T ss_pred             cccCCc-------cCHHHHHHhCC---CCCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCccccC--
Confidence            888764       47899999887   46788888999999998875   5667777999999999999986332211  


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                          +    ++.+ -.|++.|.+|.++--|--+|.+  ++.+++.+.+++  +...........++....++.+.|+
T Consensus       191 ----P----l~~G-aDivihS~TKyi~Ghsd~~~G~--v~~~~~~~~~~r--~~~~~~~~G~~~~p~da~ll~rgl~  254 (392)
T d1gc0a_         191 ----P----LELG-ADLVVHSATKYLSGHGDITAGI--VVGSQALVDRIR--LQGLKDMTGAVLSPHDAALLMRGIK  254 (392)
T ss_dssp             ----G----GGGT-CSEEEEETTTTTTCSSSCCCEE--EEECHHHHHHHH--HTHHHHHTCCCCCHHHHHHHHHHHT
T ss_pred             ----h----HHhC-CCEEEEecceeecCCccccccc--ccchhHHHHHHH--HHHHHHccCCcCChhhHHHHHhccc
Confidence                1    1222 3478999999996444444444  344455333221  1222233466788888888877655

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.6e-12  Score=122.86  Aligned_cols=197  Identities=13%  Similarity=0.042  Sum_probs=138.9

Q ss_pred             cCCCCCCccccHHHHHHHHHHHccCCCC-CCCC-C------cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHH
Q 017967           93 YRTEELQPYVLDVVKKAENLMLERGENK-EYLP-I------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSL  164 (363)
Q Consensus        93 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~Y~~-~------~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al  164 (363)
                      |.|..+..++++.+.+++.+........ +... .      .-..+.|+.+|+++...     .+++|++  +.++|+++
T Consensus        25 Yld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~-----~~~~i~~--~~~~T~~~   97 (405)
T d1jf9a_          25 YLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINAR-----SAEELVF--VRGTTEGI   97 (405)
T ss_dssp             ECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE--ESSHHHHH
T ss_pred             EEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCC-----Ccccccc--cCcHHHHH
Confidence            3444555667888888877765331101 0011 1      12456788888887543     2578887  99999999


Q ss_pred             HHHHHHHH--HhCCCCEEEEcCCCCcchHH----HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCC
Q 017967          165 RLAAALIE--RYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCA  238 (363)
Q Consensus       165 ~l~~~l~~--~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p  238 (363)
                      +++...+.  ...+||.|++.+-.|+....    ..++.|++++.+|++  .++.+|++.+++++.   ++++++.++..
T Consensus        98 ~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~--~~g~~~~~~~~~~i~---~~t~lv~~~~v  172 (405)
T d1jf9a_          98 NLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN--PDGTLQLETLPTLFD---EKTRLLAITHV  172 (405)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC--TTSCBCGGGHHHHCC---TTEEEEEEESB
T ss_pred             HHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCC--CCCcCCHHHHHHhcc---CCcEEEEEecC
Confidence            88754322  24589999999999977544    446789999999984  457889999998876   46889999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          239 HNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       239 ~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      +|.||..++.+++   .++|+++|+++++|.+...-.. +.     .+..    ..-.+++.|+.|.+|.+|  +|++
T Consensus       173 ~~~tG~~~pi~~i---~~~~~~~g~~~~vD~~q~~g~~-~i-----d~~~----~~~D~~~~s~hK~~Gp~G--~g~l  235 (405)
T d1jf9a_         173 SNVLGTENPLAEM---ITLAHQHGAKVLVDGAQAVMHH-PV-----DVQA----LDCDFYVFSGHKLYGPTG--IGIL  235 (405)
T ss_dssp             CTTTCCBCCHHHH---HHHHHHTTCEEEEECTTTTTTS-CC-----CHHH----HTCSEEEEEGGGTTSCSS--CEEE
T ss_pred             CCcccccCchHHh---hhHHHHcCCeeecccceecccc-cc-----chhh----cCCceeeccccccccCCC--ceee
Confidence            9999999987664   5569999999999999433221 11     1211    134588999999988666  6777

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.43  E-value=1.1e-11  Score=118.87  Aligned_cols=191  Identities=12%  Similarity=0.053  Sum_probs=134.0

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCC
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARV  199 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~  199 (363)
                      ..|+......+|.+.+|+++..        +.+++  +++|+.|..++  +..++.|||.|+.... |......+...|.
T Consensus        69 d~Y~~dpt~~~lE~~~a~l~G~--------e~al~--~~SGt~An~~a--~~~l~~~Gd~Vi~~~~-f~~~~~~i~~~g~  135 (456)
T d1c7ga_          69 EAYAGSENFYHLEKTVKELFGF--------KHIVP--THQGRGAENLL--SQLAIKPGQYVAGNMY-FTTTRFHQEKNGA  135 (456)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHCC--------SEEEE--ESSHHHHHHHH--HHHHCCTTEEEEESSC-CHHHHHHHHHTTE
T ss_pred             hhccCCchHHHHHHHHHHHhCC--------CeEEE--CCCHHHHHHHH--HHHhcCCCCeEecCcc-hHHHHHHHHHcCc
Confidence            5698889999999999999633        56666  89999998887  5556789998886654 5555556677888


Q ss_pred             CeEEEecc--------cCCCCCCCHHHHHHHHHcCC-CCcEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHhcCCeEEEec
Q 017967          200 PWSEYRYY--------DPKTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQEKNHIPFFDV  269 (363)
Q Consensus       200 ~~~~v~~~--------~~~~~~~d~~~l~~~l~~~~-~~~~~~~i~~p~NPT-G~~~s~~~~~~i~~~~~~~~~~ii~De  269 (363)
                      ..+.+...        +..++.+|++.+++.+++.. ....++++.++||+. |..++.+++++|.++|++||+.+++|+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~  215 (456)
T d1c7ga_         136 TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA  215 (456)
T ss_dssp             EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             eeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEc
Confidence            87766542        12346789999999998643 334577888999996 688899999999999999999999999


Q ss_pred             CCCC----------CcCCCCCCchhHH-HHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHH
Q 017967          270 AYQG----------FASGSLDNDASSV-RLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS  331 (363)
Q Consensus       270 ~y~~----------~~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~  331 (363)
                      +...          ..+.+  .....+ .....  .--++..|++|.++.++  -|++  ++.+++.+++++.
T Consensus       216 a~~~~~a~~~~~~~~~~~~--~~i~~i~~~~~~--~ad~~s~s~~K~~~~~~--GG~i--~~~~~~l~~~~r~  280 (456)
T d1c7ga_         216 TRCVENAYFIKEQEAGYEN--VSIKDIVHEMFS--YADGCTMSGKKDCLVNI--GGFL--CMNDEEMFSAAKE  280 (456)
T ss_dssp             TTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHT--TCSEEEEETTTTTCCSS--CEEE--EESCHHHHHHHHH
T ss_pred             chhhcchhhhcccccccCC--CChhhhcccccc--ccccEEEeccccccccc--eeEE--EcCCHHHHHHHHH
Confidence            8421          11111  111111 11111  12245568999998543  3777  6777775555544

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.42  E-value=2e-11  Score=113.96  Aligned_cols=218  Identities=13%  Similarity=0.123  Sum_probs=147.5

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG  177 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g  177 (363)
                      .+.++...+...........+.|+.  ......|.+.+|++..+        +..++  +++|..|+..+  ++.++.+|
T Consensus        39 t~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEgg--------~~a~~--~sSGMaAi~~~--l~~l~~~G  106 (398)
T d1qgna_          39 AYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGA--------ESTLL--MASGMCASTVM--LLALVPAG  106 (398)
T ss_dssp             BBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHHSCSS
T ss_pred             cEEeCCHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhCC--------ceEEE--ecCcchHHHHH--Hhhccccc
Confidence            4555555554433322222244543  45567888999998533        35555  89999998877  67778899


Q ss_pred             CEEEEcCCCCcchHHHHh----hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          178 AKVLISSPTWGNHKNIFN----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       178 d~Vlv~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      |+|++....|.+....++    ..|+++..++.       .+.+..++.+..  ++++++++-+|.|||..+..   +++
T Consensus       107 d~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~-------~~~~~~~~~~~~--~~t~~v~~EspsNP~l~v~D---i~~  174 (398)
T d1qgna_         107 GHIVTTTDCYRKTRIFIETILPKMGITATVIDP-------ADVGALELALNQ--KKVNLFFTESPTNPFLRCVD---IEL  174 (398)
T ss_dssp             CEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS-------SCHHHHHHHHHH--SCEEEEEEESSCTTTCCCCC---HHH
T ss_pred             ccccccccccchhhhhhcccccccccccccccc-------cchhhhhhhhcc--ccceEEEccCccccccccch---HHH
Confidence            999999999988876654    67888777753       244544444332  45778888999999998876   566


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHH
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQL  333 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l  333 (363)
                      |+++|+++|+++|+|+.|.....-.      +    ++.+ -.|+++|.+|.++--|--+|-+  ++.+++.+    ..+
T Consensus       175 ia~ia~~~g~~~vVDnT~atP~~~~------P----l~~G-aDiVihS~TKy~~Ghsdv~~G~--v~~~~~~~----~~~  237 (398)
T d1qgna_         175 VSKLCHEKGALVCIDGTFATPLNQK------A----LALG-ADLVLHSATKFLGGHNDVLAGC--ISGPLKLV----SEI  237 (398)
T ss_dssp             HHHHHHHTTCEEEEECTTTCTTTCC------T----TTTT-CSEEEECTTTTTTCSSSCCCEE--EEECHHHH----HHH
T ss_pred             HHHHHhhcCCEEEecceeeccccCC------c----hhhC-CCEEEEechhhcCcccceeehh--hcchhhhh----hhh
Confidence            7777999999999999986433221      1    1222 3478999999997666555655  45567743    444


Q ss_pred             HhhhccccCCCchHHHHHHhccccc
Q 017967          334 KRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       334 ~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +..........++....++.+.|+.
T Consensus       238 ~~~~~~~G~~l~p~~a~ll~rgl~T  262 (398)
T d1qgna_         238 RNLHHILGGALNPNAAYLIIRGMKT  262 (398)
T ss_dssp             HHHHHHHCCCCCHHHHHHHHHHGGG
T ss_pred             hhhcccCCCcCCHHHHHHHHhcchH
Confidence            4444455668888888888776653

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.42  E-value=2.8e-12  Score=119.54  Aligned_cols=187  Identities=16%  Similarity=0.035  Sum_probs=131.9

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCEE
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~V  180 (363)
                      +.+.-.+++.+.+..+   .|.......+|.+.+|+++..        +++++  +.+||.|+.++  +..+ +.+||+|
T Consensus        10 ~~~~~~~~~~~~~~~~---~~~~G~~v~~~E~~la~~~g~--------~~ai~--~~sgt~Al~~a--l~al~~~~gdeV   74 (376)
T d1mdoa_          10 MGAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTGN--------QYAVA--VSSATAGMHIA--LMALGIGEGDEV   74 (376)
T ss_dssp             CCHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEE
T ss_pred             CCHHHHHHHHHHHhcC---CCcCCHHHHHHHHHHHHHHCc--------CeEEE--eCCHHHHHHHH--HHHhCCCCCCEE
Confidence            3444455666666543   244445678999999999754        35555  78999999988  4444 5699999


Q ss_pred             EEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHh
Q 017967          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (363)
Q Consensus       181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~  260 (363)
                      ++++.+|......+...|.+++.++++ .+++.+|++.+++++++   ++++++++   |..|...+   +.+|.++|++
T Consensus        75 i~~~~~~~~~~~ai~~~g~~pv~~d~~-~~~~~~d~~~l~~~i~~---~tkaIi~~---h~~G~~~~---~~~i~~i~~~  144 (376)
T d1mdoa_          75 ITPSMTWVSTLNMIVLLGANPVMVDVD-RDTLMVTPEHIEAAITP---QTKAIIPV---HYAGAPAD---LDAIYALGER  144 (376)
T ss_dssp             EEESSSCHHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCCT---TEEEECCB---CGGGCCCC---HHHHHHHHHH
T ss_pred             EEecccccccccchhccccceeeeccc-ccccCCCHHHHHHhcCC---CCeEEEEe---CCCCCccc---hhHHHHHHHh
Confidence            999999999999999999999999985 45789999999999873   46666644   45676654   5567777999


Q ss_pred             cCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhH
Q 017967          261 KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDL  325 (363)
Q Consensus       261 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~  325 (363)
                      +|+++|+|.+......-.   +. .    ....+..++..+.+|.++ .|. -|.+  ++.+++.
T Consensus       145 ~~i~vIeD~a~a~g~~~~---~~-~----~g~~g~~~~Sf~~~K~l~-~g~-GG~i--~t~~~~l  197 (376)
T d1mdoa_         145 YGIPVIEDAAHATGTSYK---GR-H----IGARGTAIFSFHAIKNIT-CAE-GGIV--VTDNPQF  197 (376)
T ss_dssp             HTCCBCEECTTCTTCEET---TE-E----TTSSSEEEEECCTTSSSC-SSS-CEEE--EESCHHH
T ss_pred             cCceEEeccchhccCeeC---Ce-e----cccccCccccCCCcCCCC-CCC-CCEE--EEechhH
Confidence            999999999954332110   00 0    112233444455579886 454 5777  7777773

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.40  E-value=1.7e-11  Score=113.95  Aligned_cols=192  Identities=13%  Similarity=0.100  Sum_probs=137.5

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (363)
                      ......|.+.+|++-.+        +..++  +++|..|+..   ++.++.+||+|++..+.|.+....++    ..|++
T Consensus        48 nPt~~~le~~la~LE~~--------~~a~~--fsSGMaAisa---ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~  114 (380)
T d1ibja_          48 NPTRDALESLLAKLDKA--------DRAFC--FTSGMAALSA---VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV  114 (380)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHH---HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCE
T ss_pred             ChHHHHHHHHHHHHcCC--------ceEEe--hhhHHHHHHH---HHHhhCCCCEEEEEecccccccchhhhhhcccccc
Confidence            55567888999988533        34545  8999999753   46677899999999999988877765    56888


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      +..++.       .+.+.++++++   ++++++++-.|.|||..+...   ++|.++|+++|+++|+|+.|.....-.  
T Consensus       115 ~~~~d~-------~~~~~~~~ai~---~~t~li~~EtpsNP~l~v~Di---~~i~~iA~~~g~~~vVDnT~atP~~~~--  179 (380)
T d1ibja_         115 VKRVNT-------TKLDEVAAAIG---PQTKLVWLESPTNPRQQISDI---RKISEMAHAQGALVLVDNSIMSPVLSR--  179 (380)
T ss_dssp             EEEECT-------TSHHHHHHHCC---SSEEEEEECSSCTTTCCCCCH---HHHHHHHHTTTCEEEEECTTTCTTTCC--
T ss_pred             ccccCc-------chHHHHHHHhc---cCccEEEeccccccccccccH---HHHHHHHHHcCCeEEeecccccccccc--
Confidence            777653       46788888876   467888889999999998865   556666999999999999987544321  


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                          +    ++. .-.+++.|.+|.++--|--+|-.+ +..++.    +.+++...........+++...++.+.|+.
T Consensus       180 ----P----l~~-GaDiVvhS~TKyi~GhsDv~~G~v-~~~~~~----~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T  243 (380)
T d1ibja_         180 ----P----LEL-GADIVMHSATKFIAGHSDVMAGVL-AVKGEK----LAKEVYFLQNSEGSGLAPFDCWLCLRGIKT  243 (380)
T ss_dssp             ----G----GGT-TCSEEEEETTTTTTCSSCCCCEEE-EECSHH----HHHHHHHHHHHTTCBCCHHHHHHHHHHHTT
T ss_pred             ----c----ccc-CCCEEEecccceeccccCcccccc-ccchhh----HHHHHHhhccccCCcCCHHHHHHHHhcchh
Confidence                1    122 245889999999975444444442 444455    444455454555667888888888776553

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=2.1e-13  Score=124.22  Aligned_cols=157  Identities=17%  Similarity=0.113  Sum_probs=118.1

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEE
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vl  181 (363)
                      +.|.+++|+.+.. .+. ..|++.....+|++.+|+++ +.       +++++  ++||++|..++  +...+.+||.++
T Consensus        12 p~p~v~~A~~~a~-~g~-~~yg~~p~~~~le~~lA~~~-G~-------~~~~~--~~sGt~A~~~a--l~a~~~~g~~~~   77 (343)
T d1m6sa_          12 PTEEMRKAMAQAE-VGD-DVYGEDPTINELERLAAETF-GK-------EAALF--VPSGTMGNQVS--IMAHTQRGDEVI   77 (343)
T ss_dssp             CCHHHHHHHHTCC-CCC-GGGTCCHHHHHHHHHHHHHT-TC-------SEEEE--ESCHHHHHHHH--HHHHCCTTCEEE
T ss_pred             CCHHHHHHHHhhh-cCC-cccCCCHHHHHHHHHHHHHH-CC-------CeEEE--eCCHHHHHHHH--HHHHhccCCcee
Confidence            3567888876543 222 56888889999999999995 32       46666  89999998777  556677999999


Q ss_pred             EcCCCCcchHH---HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC----CCCcEEEEEcCCCCCCCCCCCHHHHHHH
Q 017967          182 ISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA----PGGSFILLHGCAHNPTGIDPTPEQWEKI  254 (363)
Q Consensus       182 v~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~~~~i~~p~NPTG~~~s~~~~~~i  254 (363)
                      +..+.+..+..   .....+..+..++.   .....|++.+++.+...    +....+++.+.++|+.|.+++.+++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i  154 (343)
T d1m6sa_          78 LEADSHIFWYEVGAMAVLSGVMPHPVPG---KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEI  154 (343)
T ss_dssp             EETTCHHHHSSTTHHHHHTCCEEEEECE---ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHH
T ss_pred             ccccccceeeecccccccccceeecccc---ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHH
Confidence            99998765533   33344555556654   24567999999888652    2234466677789999999999999999


Q ss_pred             HHHHHhcCCeEEEecCCCCCc
Q 017967          255 ADVIQEKNHIPFFDVAYQGFA  275 (363)
Q Consensus       255 ~~~~~~~~~~ii~De~y~~~~  275 (363)
                      .++|+++++++++|++|..+.
T Consensus       155 ~~~~~~~g~~~~~D~a~~~~~  175 (343)
T d1m6sa_         155 CTIAKEHGINVHIDGARIFNA  175 (343)
T ss_dssp             HHHHHHHTCEEEEEETTHHHH
T ss_pred             HHHHHhcCeEEEecccccccc
Confidence            999999999999999987654

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=4.2e-11  Score=111.36  Aligned_cols=191  Identities=16%  Similarity=0.122  Sum_probs=135.3

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (363)
                      ......|.+.+|++..+        +..++  +.+|..|+..+  ++.++.+||.|++....|.+....+.    ..|++
T Consensus        49 nPt~~~le~~la~LEgg--------~~a~~--~sSGMaAi~~~--l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~  116 (384)
T d1cs1a_          49 NPTRDVVQRALAELEGG--------AGAVL--TNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYR  116 (384)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCE
T ss_pred             CHHHHHHHHHHHHHhCC--------CceEE--ecChHHHHHHH--Hhhcccccceecccccccchhhhhhhhhhcccccc
Confidence            55677899999998533        34545  89999998777  66778899999999999987755543    55666


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLD  280 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~  280 (363)
                      +..++.       .|.+.+++++.+   +++++++-+|.|||..+..   +++|+++|+++|+++|+|+.|.....-.  
T Consensus       117 ~~~~d~-------~d~~~~~~~~~~---~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~~--  181 (384)
T d1cs1a_         117 VLFVDQ-------GDEQALRAALAE---KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN--  181 (384)
T ss_dssp             EEEECT-------TCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--
T ss_pred             cccccC-------CCHHHHHhhccc---cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCccccc--
Confidence            666643       478899998883   5668888999999998876   5566677999999999999995433221  


Q ss_pred             CchhHHHHHHhcCCeEEEEEcCccccccccccc-eEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          281 NDASSVRLFATRGMELLVAQSYSKNLGLYAERI-GAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       281 ~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv-G~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                          +    ++. .-.|+++|.||.++--|-=+ |.+  ++.++..    .+.+...........+++...++.+.|+
T Consensus       182 ----P----l~~-GaDiVvhS~TKyi~Ghsdv~~G~v--v~~~~~~----~~~~~~~~~~~G~~~~p~~a~ll~rgL~  244 (384)
T d1cs1a_         182 ----P----LAL-GADLVLHSCTKYLNGHSDVVAGVV--IAKDPDV----VTELAWWANNIGVTGGAFDSYLLLRGLR  244 (384)
T ss_dssp             ----G----GGG-TCSEEEEETTTTTTCSSCCCCEEE--EESSHHH----HHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred             ----c----ccc-CCCEEEEccccccccCCCcccccc--cCCchhh----hhhhhhhhhhhhhccccccHHHHhhccc
Confidence                1    122 23478999999996444334 444  5666663    3334434444555788888887776654

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.36  E-value=2.8e-11  Score=113.46  Aligned_cols=217  Identities=15%  Similarity=0.074  Sum_probs=141.5

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHcc------CCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLER------GENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~------~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      ..++||+...|..-..+    +.++++..+.++.      +...-++...-..+|.+.+|+|+..        +..++  
T Consensus        45 ~~~~~FsSndYLGL~~~----p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~--------e~all--  110 (396)
T d2bwna1          45 QDITVWCGNDYLGMGQH----PVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK--------EAALV--  110 (396)
T ss_dssp             EEEEECSCSCTTSGGGC----HHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC--------SEEEE--
T ss_pred             eEEEEEEcccccCcCCC----HHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCC--------Cceee--
Confidence            36899998888644333    3444444443321      1112233334457899999999533        45555  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcC-CCCcEEEEE
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAA-PGGSFILLH  235 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~~~~i  235 (363)
                      .++|..|...+...+....+||.|+...-.+.....-++..+.+++.++-       -|.+.+++.++.. +.+.+++++
T Consensus       111 ~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H-------nd~~~l~~l~~~~~~~~~~~iv~  183 (396)
T d2bwna1         111 FSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH-------NDVAHLRELIAADDPAAPKLIAF  183 (396)
T ss_dssp             ESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT-------TCHHHHHHHHHHSCTTSCEEEEE
T ss_pred             eecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeec-------chHHHhhhHHhhhcccCceeEEE
Confidence            67887776555333444568899999998888888888889999888763       3677777776653 344566666


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceE
Q 017967          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGA  315 (363)
Q Consensus       236 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~  315 (363)
                      ..-.+-+|.+.+..   +|++++++||.++++||++.--..+..-..  ....+-......++++||||.||..|   |+
T Consensus       184 egvySmdGd~apl~---~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G--~~~~~~~~~~~di~~gTlsKa~g~~G---g~  255 (396)
T d2bwna1         184 ESVYSMDGDFGPIK---EICDIAEEFGALTYIDEVHAVGMYGPRGAG--VAERDGLMHRIDIFNGTLAKAYGVFG---GY  255 (396)
T ss_dssp             ESBCTTTCCBCCHH---HHHHHHHHHTCEEEEECTTTTTTSSTTSCC--HHHHHTCGGGCSEEEEESSSTTCSCC---EE
T ss_pred             EeeccCcccccccH---hHHHHhhhhcceeeeccceeeeeecccccc--chhhcCCceeeeeeeecccccccccc---cc
Confidence            67777889888755   556679999999999999765555422111  12222112345788999999999765   77


Q ss_pred             EEEeeCChhHHHHHHH
Q 017967          316 MNVVCSSSDLAARVKS  331 (363)
Q Consensus       316 i~~v~~~~~~~~~~~~  331 (363)
                      +   +.+++.++.++.
T Consensus       256 v---~~~~~~i~~l~~  268 (396)
T d2bwna1         256 I---AASARMVDAVRS  268 (396)
T ss_dssp             E---EECHHHHHHHHH
T ss_pred             c---chhHHHHHHHHh
Confidence            6   455774444433

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.36  E-value=1.1e-11  Score=116.33  Aligned_cols=196  Identities=16%  Similarity=0.072  Sum_probs=137.6

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHH-hCCCCEE
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIER-YFPGAKV  180 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~-~~~gd~V  180 (363)
                      +-+.-.+++.+.++.+. .-+....-..+|.+.+|+++..        .+++.  +++||.|+.++.  ..+ +.+||+|
T Consensus        11 ~~~~~~~~~~~~l~~g~-~~~~~g~~v~~fE~~~a~~~g~--------~~~v~--~~SGt~Al~lal--~~l~~~~gdeV   77 (384)
T d1b9ha_          11 YDDAERNGLVRALEQGQ-WWRMGGDEVNSFEREFAAHHGA--------AHALA--VTNGTHALELAL--QVMGVGPGTEV   77 (384)
T ss_dssp             CCHHHHHHHHHHHHTSC-CBTTTCSHHHHHHHHHHHHTTC--------SEEEE--ESCHHHHHHHHH--HHTTCCTTCEE
T ss_pred             CCHHHHHHHHHHHHcCC-eeecCCHHHHHHHHHHHHHHCc--------CeEEE--eCCHHHHHHHHH--HHcCCCCCCEE
Confidence            34455566666665542 2123344578999999999633        45655  899999999983  332 4699999


Q ss_pred             EEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHh
Q 017967          181 LISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE  260 (363)
Q Consensus       181 lv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~  260 (363)
                      ++++.+|......+...|.+++.++++ +.++.+|++.+++.+.   ++++++++   -+..|...   ++.+|.++|++
T Consensus        78 i~p~~t~~a~~~ai~~~g~~p~~~d~~-~~~~~~d~~~~~~~i~---~~tk~i~~---~~~~g~~~---d~~~i~~~~~~  147 (384)
T d1b9ha_          78 IVPAFTFISSSQAAQRLGAVTVPVDVD-AATYNLDPEAVAAAVT---PRTKVIMP---VHMAGLMA---DMDALAKISAD  147 (384)
T ss_dssp             EEESSSCTHHHHHHHHTTCEEEEECBC-TTTCCBCHHHHHHHCC---TTEEEECC---BCGGGCCC---CHHHHHHHHHH
T ss_pred             EEecccccccccccccccccccccccc-ccccccchhhhccccc---cccccccc---cccccccc---ccccchhhhhh
Confidence            999999999999999999999999984 5678999999999876   34556553   35556554   46677778999


Q ss_pred             cCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHH
Q 017967          261 KNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKS  331 (363)
Q Consensus       261 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~  331 (363)
                      +++++|+|.+......-..   . .+   ...++-.++..+.+|.++ .|. -|.+  ++.+++..+++..
T Consensus       148 ~~i~lieD~a~a~ga~~~g---~-~~---g~~g~~~~~Sf~~~K~i~-~g~-GG~i--~t~~~~~~~~~~~  207 (384)
T d1b9ha_         148 TGVPLLQDAAHAHGARWQG---K-RV---GELDSIATFSFQNGKLMT-AGE-GGAV--VFPDGETEKYETA  207 (384)
T ss_dssp             HTCCBCEECTTCTTCEETT---E-EG---GGSSSCEEEECCTTSSSC-SSS-CEEE--EECTTCHHHHHHH
T ss_pred             hhhhhhhhhceecccccCC---E-ec---Ccccccceeccccccccc-ccc-cchh--hhhhHHHHHHHHH
Confidence            9999999999654332110   0 11   134456666777799987 454 6777  7877875555444

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=2.1e-11  Score=114.98  Aligned_cols=211  Identities=9%  Similarity=0.038  Sum_probs=137.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCC-------CCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL-------PIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~-------~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      .++||+...|.....+    |.+.++..+.++.-- .++.       ...-..+|.+.+|+++..        +.+++  
T Consensus        46 ~~l~f~s~dYLGl~~h----p~v~~a~~~a~~~~g-~~~~~sr~~~g~~~~~~~lE~~lA~~~g~--------e~al~--  110 (401)
T d1fc4a_          46 HVINFCANNYLGLANH----PDLIAAAKAGMDSHG-FGMASVRFICGTQDSHKELEQKLAAFLGM--------EDAIL--  110 (401)
T ss_dssp             EEEECCCSCTTSCTTC----HHHHHHHHHHHHHHC-SCCCSCHHHHCCBHHHHHHHHHHHHHHTC--------SEEEE--
T ss_pred             EEEEEEccccccccCC----HHHHHHHHHHHHHhC-CCcccceeeccCcHHHHHHHHHHHHhhcC--------CceEE--
Confidence            6899987776533333    344444444332100 1121       234456899999999632        56766  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHH---HcCCCCcEEE
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI---KAAPGGSFIL  233 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l---~~~~~~~~~~  233 (363)
                      +++|+.|...+  +..+..++|.|++..-.+.....-+...+.++..++.       .|.+.+++.+   ++.....+++
T Consensus       111 ~~SG~~An~~~--i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~-------~d~~~le~~~~~~~~~~~~~~li  181 (401)
T d1fc4a_         111 YSSCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLI  181 (401)
T ss_dssp             ESCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEE
T ss_pred             ecchhhhhHHH--HHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcC-------CChHHHHHHHHHhhhcccCceEE
Confidence            89999997776  4556779999999999998888888888888777654       3555555544   4333445566


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH-hcCCeEEEEEcCcccccccccc
Q 017967          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA-TRGMELLVAQSYSKNLGLYAER  312 (363)
Q Consensus       234 ~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~~l~G~R  312 (363)
                      ++-.-.+..|...+   +.+|.++|+++|.++|+||++.....+..   ........ ..++..+++.||+|.+|  |..
T Consensus       182 v~egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~---G~G~~~~~~~~~~~dii~~tl~Ka~g--g~~  253 (401)
T d1fc4a_         182 ATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGEN---GRGSHEYCDVMGRVDIITGTLGKALG--GAS  253 (401)
T ss_dssp             EEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTT---SCCHHHHTTCTTCCSEEEEESSSTTC--SSS
T ss_pred             EEcCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCC---CCccchhccCCCCCeEEEeecccccc--cCC
Confidence            65666666776665   55566679999999999999888776532   11222222 23345688999999995  544


Q ss_pred             ceEEEEeeCChhHHHHH
Q 017967          313 IGAMNVVCSSSDLAARV  329 (363)
Q Consensus       313 vG~i~~v~~~~~~~~~~  329 (363)
                      .|++   +.+.+.++.+
T Consensus       254 Gg~v---~g~~~~~~~l  267 (401)
T d1fc4a_         254 GGYT---AARKEVVEWL  267 (401)
T ss_dssp             CEEE---EECHHHHHHH
T ss_pred             cccc---cCCHHHHHHH
Confidence            5776   5557744333

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=5.2e-11  Score=111.14  Aligned_cols=191  Identities=12%  Similarity=0.015  Sum_probs=135.5

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (363)
                      ......|.+.++++-.+        +..++  +++|..|+..+  ++.++.+||+|++....|.+....++    ..|++
T Consensus        57 nPt~~~le~~la~LEg~--------~~a~~--~~SGMaAi~~~--l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~  124 (391)
T d1cl1a_          57 TLTHFSLQQAMCELEGG--------AGCVL--FPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVT  124 (391)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred             ChhHHHHHHHHHHHhCC--------ccEEE--eccccceeeeh--hhcccCCCCeEEEecccccchhhhhhhcccccccc
Confidence            45567888899887422        45555  89999998777  67778899999999999988777664    67888


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHh--cCCeEEEecCCCCCcCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQE--KNHIPFFDVAYQGFASGS  278 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~--~~~~ii~De~y~~~~~~~  278 (363)
                      +..++.       .|.+.++++++   ++++++++-+|.|||..+...+.   |+++|++  +|+++|+|+.|.....-.
T Consensus       125 ~~~~d~-------~d~~~~~~~i~---~~t~~i~~EtpsNP~l~v~Di~~---i~~~a~~~~~g~~~vVDnT~atP~~~~  191 (391)
T d1cl1a_         125 TSWFDP-------LIGADIVKHLQ---PNTKIVFLESPGSITMEVHDVPA---IVAAVRSVVPDAIIMIDNTWAAGVLFK  191 (391)
T ss_dssp             EEEECT-------TCGGGGGGTCC---TTEEEEEEESSCTTTCCCCCHHH---HHHHHHHHCTTCEEEEECTTTTTTSSC
T ss_pred             cccccC-------ccccccccccc---cccceeeecccCcccccccccHH---HHHHHHhccCCcEEEEeccccchhhhc
Confidence            877753       35677777665   45778888999999999987655   4555655  599999999987654331


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                            +    ++. .-.|++.|.+|.++--|-=+|-+  ++.+++.    ...+...........++..+.++.+.|+
T Consensus       192 ------P----l~~-GaDivvhS~TKy~~GhsdvlgG~--vv~~~~~----~~~~~~~~~~~G~~~~p~~a~ll~rgl~  253 (391)
T d1cl1a_         192 ------A----LDF-GIDVSIQAATKYLVGHSDAMIGT--AVCNARC----WEQLRENAYLMGQMVDADTAYITSRGLR  253 (391)
T ss_dssp             ------G----GGG-TCSEEEEETTTTTTCSSSCCCEE--EEECTTT----HHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred             ------c----ccc-ccceEEeecchhccccccccccc--eeccccc----cccchhhhhcccccCCchhhhhhhccch
Confidence                  1    122 23578999999997545445555  2334553    3344444445566888888888877554

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=1e-10  Score=109.77  Aligned_cols=157  Identities=19%  Similarity=0.123  Sum_probs=115.9

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (363)
                      ......|.+.++++-.+        +..++  +.+|..|+..+  ++.++.+||+|+++...|.+....++    +.|++
T Consensus        57 nPT~~~LE~~la~LE~~--------~~a~~--~~SGmaAi~~~--~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~  124 (421)
T d2ctza1          57 NPTVDVLEKRLAALEGG--------KAALA--TASGHAAQFLA--LTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIE  124 (421)
T ss_dssp             CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCE
T ss_pred             CHHHHHHHHHHHHHhCC--------CeEEE--ecChHHHHHHH--HHhhcccccceeecCCcCCchhHHHHHHHhhcccc
Confidence            44567888899888533        34544  89999997766  67778899999999999988777654    78888


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC--CCcCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ--GFASGS  278 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~--~~~~~~  278 (363)
                      +..++..      -..+..++.++   ++++++++-+|.|||..+..   +++|+++|+++|+++|+|+.|.  ++... 
T Consensus       125 ~~~~d~~------~~~~~~~~~~~---~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~~-  191 (421)
T d2ctza1         125 VRFTSRE------ERPEEFLALTD---EKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLR-  191 (421)
T ss_dssp             EEECCTT------CCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCC-
T ss_pred             ceecccc------cCcchhccccC---CCceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceecc-
Confidence            8877541      13344454444   46888999999999998875   5667777999999999999986  34332 


Q ss_pred             CCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEE
Q 017967          279 LDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMN  317 (363)
Q Consensus       279 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~  317 (363)
                            +    ++. .-.|+++|.+|.++--|--+|-++
T Consensus       192 ------P----l~~-GaDiVvhS~TKyl~GHsD~l~G~v  219 (421)
T d2ctza1         192 ------P----LAW-GAALVTHSLTKWVGGHGAVIAGAI  219 (421)
T ss_dssp             ------G----GGG-TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred             ------c----ccc-CCcEEEEechhhccCCCCeEEEEE
Confidence                  1    122 234889999999986677777773

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=2.4e-11  Score=115.90  Aligned_cols=183  Identities=11%  Similarity=-0.034  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHH-HHHh-CCCCEEEEcCCCCcchHHHHhhCCCCeEEEec
Q 017967          129 AAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAAL-IERY-FPGAKVLISSPTWGNHKNIFNDARVPWSEYRY  206 (363)
Q Consensus       129 ~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l-~~~~-~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~  206 (363)
                      ..+...+.+++....|.+-. ....+  |.||+++..++... .... .+++.|+++...+..+...+...|++.+.|+.
T Consensus        93 ~~le~~~~~~~~~l~g~~~~-~~~~~--~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~  169 (445)
T d3bc8a1          93 NKITNSLVLNVIKLAGVHSV-ASCFV--VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN  169 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTC-CEEEE--ESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCcc-cCccc--cccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEe
Confidence            44555555554433333211 23333  67777665544222 1112 36689999999999999999999999888863


Q ss_pred             -ccCCCCCCCHHHHHHHHHcC-CCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchh
Q 017967          207 -YDPKTVGLDFEGMIADIKAA-PGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDAS  284 (363)
Q Consensus       207 -~~~~~~~~d~~~l~~~l~~~-~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~  284 (363)
                       .+.+++.+|++.|++++.+. .+++++++++.|+|++|..-+   +++|+++|+++|+++++|++|.......    ..
T Consensus       170 ~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~----~~  242 (445)
T d3bc8a1         170 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKC----MH  242 (445)
T ss_dssp             EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH----HH
T ss_pred             eccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhc----cc
Confidence             23456899999999999753 235778888999999999865   6667788999999999999987654210    00


Q ss_pred             HHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChh
Q 017967          285 SVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       285 ~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      ........+.-.+++.|..|.++.| .-.|++  +..+..
T Consensus       243 ~~~~~~~~~~vd~~~~s~hK~~~~p-~g~~~l--~~~~~~  279 (445)
T d3bc8a1         243 LIQQGARVGRIDAFVQSLDKNFMVP-VGGAII--AGFNEP  279 (445)
T ss_dssp             HHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEE--EESCHH
T ss_pred             cchhccCcCCcceEEecCccccccC-CCCcee--eeCChH
Confidence            1111122233346688889988744 346666  677666

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.28  E-value=3.5e-11  Score=110.10  Aligned_cols=187  Identities=16%  Similarity=0.127  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCCeEEEe
Q 017967          130 AFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYR  205 (363)
Q Consensus       130 ~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~  205 (363)
                      .|.+.+|++..+        +..++  +++|..|+..+  ++.++.+||+|+++...|.+....    +++.|+++..++
T Consensus         2 aLE~~la~Leg~--------~~a~~--~sSGMaAi~~~--l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d   69 (331)
T d1pffa_           2 ALEGKIAKLEHA--------EACAA--TASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID   69 (331)
T ss_dssp             HHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEec
Confidence            477888888533        45555  89999998776  677789999999999999776555    458899988886


Q ss_pred             cccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhH
Q 017967          206 YYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASS  285 (363)
Q Consensus       206 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  285 (363)
                      .       .|++.++++++   ++++++++-+|.||+..+...+++.+++  ++++++++|+|+.|.....-.      +
T Consensus        70 ~-------~d~~~~~~~i~---~~t~~i~~Es~~np~~~v~d~~~~~~~~--a~~~~~~~vVDnT~atp~~~~------p  131 (331)
T d1pffa_          70 M-------AVPGNIEKHLK---PNTRIVYFETPANPTLKVIDIEDAVKQA--RKQKDILVIVDNTFASPILTN------P  131 (331)
T ss_dssp             T-------TSTTHHHHTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHH--TTSSSCEEEEECTTTHHHHCC------G
T ss_pred             c-------cchhhHhhhcc---cccceeeeecccccccccccchhhhhhh--hcccCceEEeecccccccccc------c
Confidence            5       26788888776   4677888899999999998766655442  467899999999986433221      1


Q ss_pred             HHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHH--hhhccccCCCchHHHHHHhcccc
Q 017967          286 VRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLK--RLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       286 ~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~--~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                          ++.+ -.|++.|.+|.++--|--+|-+  ++.+++    ...+.+  ..........++....++.+.|+
T Consensus       132 ----l~~G-aDiVv~S~TKy~~Gh~d~~~G~--v~~~~~----~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~  194 (331)
T d1pffa_         132 ----LDLG-VDIVVHSATKYINGHTDVVAGL--VCSRAD----IIAKVKSQGIKDITGAIISPHDAWLITRGTL  194 (331)
T ss_dssp             ----GGGT-CSEEEEETTTTTSSSSSCCCEE--EEECHH----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred             ----cccC-CCEEEecchhhcCCCCcccccc--cccccc----chhhhhhhhhhhccCCCCCHHHHHHHHHHHH
Confidence                1222 3478999999997555556655  344454    232222  22334566788888888776554

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.28  E-value=5.4e-11  Score=110.85  Aligned_cols=189  Identities=13%  Similarity=-0.052  Sum_probs=119.7

Q ss_pred             HHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 017967          108 KAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTW  187 (363)
Q Consensus       108 ~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y  187 (363)
                      +++.+.++.+...+++  .-...|.+.+++++..        ...+.  +++||.|+.++...+ -+.+||+|++|+-+|
T Consensus         5 ~~~~~~l~~~~~~~~G--~~~~~fE~~~~~~~~~--------~~~~~--~~SgT~Al~lal~~l-~~~~gdeVi~p~~t~   71 (374)
T d1o69a_           5 KYIEEVFKSNYIAPLG--EFVNRFEQSVKDYSKS--------ENALA--LNSATAALHLALRVA-GVKQDDIVLASSFTF   71 (374)
T ss_dssp             HHHHHHHHHTTTSCTT--HHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHHHHHT-TCCTTCEEEEESSSC
T ss_pred             HHHHHHHhcCCcCCCC--HHHHHHHHHHHHHHCc--------CeEEE--eCCHHHHHHHHHHHc-CCCCcCEEEeCCcch
Confidence            3444445443312222  3368899999999744        35655  899999999883322 156899999999999


Q ss_pred             cchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEE
Q 017967          188 GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFF  267 (363)
Q Consensus       188 ~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~  267 (363)
                      ......+...|++++.++++ ++....+.+..+......++ ++++++.   +..|...   ++.+|.++|+++|++||+
T Consensus        72 ~a~~~~~~~~g~~pv~~Di~-~~~~~~~~~~~~~~~~~~~~-~~aii~~---~~~G~~~---d~~~i~~~~~~~~i~vIE  143 (374)
T d1o69a_          72 IASVAPICYLKAKPVFIDCD-ETYNIDVDLLKLAIKECEKK-PKALILT---HLYGNAA---KMDEIVEICKENDIVLIE  143 (374)
T ss_dssp             GGGTHHHHHTTCEEEEECBC-TTSSBCHHHHHHHHHHCSSC-CCEEEEE---CGGGCCC---CHHHHHHHHHHTTCEEEE
T ss_pred             HhhHHHHhhccceeEecccc-cccccccccccccchhcccc-ccccccc---ccccchh---hhHHHHHHhhccCcchhh
Confidence            99999999999999999985 33444455544433333233 3344433   3334433   466777789999999999


Q ss_pred             ecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHH
Q 017967          268 DVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAAR  328 (363)
Q Consensus       268 De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~  328 (363)
                      |.+-.-...-.    ...+   ...++-.++....+|.++ .|. -|.+  ++.|++.+++
T Consensus       144 D~a~a~g~~~~----~~~~---G~~gd~~~fSf~~~K~l~-tge-GG~i--~tnn~~~~~~  193 (374)
T d1o69a_         144 DAAEALGSFYK----NKAL---GTFGEFGVYSYNGNKIIT-TSG-GGML--IGKNKEKIEK  193 (374)
T ss_dssp             ECTTCTTCEET----TEET---TSSSSEEEEECCTTSSSC-CSS-CEEE--EESCHHHHHH
T ss_pred             hhhhhhcceEC----Ceec---CCCCceEEEeccCccccc-ccc-ceee--hhhhHHHHHh
Confidence            99944322110    0011   123344555556689997 454 4777  7888884433

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.27  E-value=3.8e-10  Score=105.25  Aligned_cols=218  Identities=12%  Similarity=0.117  Sum_probs=145.5

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~  175 (363)
                      ...+..+...+...........+.|+.  ......|.+.++++..+        +..++  +.+|..|+..+  ++.++.
T Consensus        29 sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~--------~~a~~--~sSGmaAi~~~--~l~l~~   96 (394)
T d1e5ea_          29 TSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKT--------EACVA--TSSGMGAIAAT--VLTILK   96 (394)
T ss_dssp             CSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCC
T ss_pred             CCCeeeCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCC--------cceee--eccchHHHHHH--HHhhcc
Confidence            335556665555444332222244543  45567788899887433        34444  79999998776  677788


Q ss_pred             CCCEEEEcCCCCcchHHH----HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHH
Q 017967          176 PGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQW  251 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~  251 (363)
                      +||.|++.+..|.+....    +...|+++..++.       -|++.++++++   ++++++++-.|.|||..+...+  
T Consensus        97 ~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~-------~d~~~~~~~i~---~~t~lv~~Etp~NP~l~v~Di~--  164 (394)
T d1e5ea_          97 AGDHLISDECLYGCTHALFEHALTKFGIQVDFINT-------AIPGEVKKHMK---PNTKIVYFETPANPTLKIIDME--  164 (394)
T ss_dssp             TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-------TSTTHHHHHCC---TTEEEEEEESSCTTTCCCCCHH--
T ss_pred             cccccccccceeehhhHhHHHHhhccceeeeccCC-------CCHHHHHHhhc---ccccEEEEeccCCcceeeehhh--
Confidence            999999999999776554    4578999988875       35678888886   4677888899999999988765  


Q ss_pred             HHHHHHHH-hcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHH
Q 017967          252 EKIADVIQ-EKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       252 ~~i~~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~  330 (363)
                       ++++.++ ++++++|+|+.|.....-.      +    ++.+ -.|+++|.||.++--|-=+|.+  ++.+.+    ..
T Consensus       165 -~~~~~~~~~~g~~vvvDnT~atP~~~~------P----l~~G-aDiVvhS~TKy~~GhsDv~~G~--v~~~~~----~~  226 (394)
T d1e5ea_         165 -RVCKDAHSQEGVLVIADNTFCSPMITN------P----VDFG-VDVVVHSATKYINGHTDVVAGL--ICGKAD----LL  226 (394)
T ss_dssp             -HHHHHHHTSTTCEEEEECTTTCTTTCC------G----GGGT-CSEEEEETTTTTTCSSCCCCEE--EEECHH----HH
T ss_pred             -hhhhccccccCeEEEecCcccCcccCC------c----hhcC-CCEEEechhhhcCCCccccccc--ccchhh----HH
Confidence             4444454 5689999999986554321      1    1222 2488999999996545445554  233455    23


Q ss_pred             HHHH--hhhccccCCCchHHHHHHhcccc
Q 017967          331 SQLK--RLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       331 ~~l~--~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ...+  .+.......++++...++.+.|+
T Consensus       227 ~~~~~~~~~~~~G~~lsp~~a~ll~rgl~  255 (394)
T d1e5ea_         227 QQIRMVGIKDITGSVISPHDAWLITRGLS  255 (394)
T ss_dssp             HHHHHTCCCCCCCCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCCCCChHHHHHHHhhch
Confidence            3332  22334566788888888877665

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.25  E-value=1.1e-10  Score=110.06  Aligned_cols=199  Identities=12%  Similarity=0.032  Sum_probs=136.0

Q ss_pred             CCCCCCccccHHHHHHHHHHHccCCC--CCCCCC------cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHH
Q 017967           94 RTEELQPYVLDVVKKAENLMLERGEN--KEYLPI------EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLR  165 (363)
Q Consensus        94 ~~~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~------~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~  165 (363)
                      .|..+..++++.+.+++.+.......  ++....      .-+.+.|+.+|+++....     ++.+++  +.+++++++
T Consensus        26 ld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~-----~~~i~~--~~~tt~~~n   98 (408)
T d1t3ia_          26 LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARS-----PREIVY--TRNATEAIN   98 (408)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSC-----GGGEEE--ESSHHHHHH
T ss_pred             eeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCC-----cccEEe--ecchHHHHH
Confidence            34445566788888887776543210  000001      123467888888875431     467777  899999988


Q ss_pred             HHHHHH--HHhCCCCEEEEcCCCCcchHH----HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCC
Q 017967          166 LAAALI--ERYFPGAKVLISSPTWGNHKN----IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAH  239 (363)
Q Consensus       166 l~~~l~--~~~~~gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~  239 (363)
                      ++...+  ..+.+||+|++.+-.|+....    ..+..|+++..+|..  .+...+.+.+++.+.   ++++++.++..+
T Consensus        99 ~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~--~~~~~~~~~l~~~~~---~~t~lv~i~~~~  173 (408)
T d1t3ia_          99 LVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLS---EKTKLVTVVHIS  173 (408)
T ss_dssp             HHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCC---TTEEEEEEESBC
T ss_pred             HHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecc--ccccccHHHhhhccC---CCceEEEEeccc
Confidence            875432  234589999999988876544    345679999999873  456788999998876   468899999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEe
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVV  319 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v  319 (363)
                      |-||..++.++   |.++|+++|+++++|.+ +.+..-+.     .+.    ..+-.+++.|..|.+|-+|  +|++  +
T Consensus       174 ~~tG~~~p~~~---i~~~~~~~g~~~ivDa~-q~~g~~~i-----d~~----~~~~D~~~~s~hK~~gp~G--~g~l--~  236 (408)
T d1t3ia_         174 NTLGCVNPAEE---IAQLAHQAGAKVLVDAC-QSAPHYPL-----DVQ----LIDCDWLVASGHKMCAPTG--IGFL--Y  236 (408)
T ss_dssp             TTTCBBCCHHH---HHHHHHHTTCEEEEECT-TTTTTSCC-----CHH----HHTCSEEEEEGGGTTSCTT--CEEE--E
T ss_pred             ccccccCcHHH---HhhhhhccCceeeeccc-eecccccc-----ccc----ccCCceEEeccccccCCCC--cccc--c
Confidence            99999999765   55669999999999988 43333221     121    1133477899999877555  6777  5


Q ss_pred             eC
Q 017967          320 CS  321 (363)
Q Consensus       320 ~~  321 (363)
                      ..
T Consensus       237 v~  238 (408)
T d1t3ia_         237 GK  238 (408)
T ss_dssp             EC
T ss_pred             cc
Confidence            44

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.22  E-value=1.8e-10  Score=110.32  Aligned_cols=143  Identities=11%  Similarity=0.126  Sum_probs=106.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh-----CCCCEEEEcCCCCcchHHHH
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-----FPGAKVLISSPTWGNHKNIF  194 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~-----~~gd~Vlv~~P~y~~~~~~~  194 (363)
                      ..|+...+..+|++++++++ +.       +++++  +++|++|.+++..++...     ..+..++...+.+..+....
T Consensus        69 ~~y~~~~~~~~le~~~a~l~-g~-------~~~~~--~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~  138 (465)
T d1ax4a_          69 EAYAGSRNYYDLKDKAKELF-NY-------DYIIP--AHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV  138 (465)
T ss_dssp             CCSSSCHHHHHHHHHHHHHH-CC-------CEEEE--ESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH
T ss_pred             hhhccChHHHHHHHHHHHHH-CC-------CEEEE--CCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHH
Confidence            46888899999999999996 32       67766  899999999986554321     12234566777777777777


Q ss_pred             hhCCCCeEEEecc--------cCCCCCCCHHHHHHHHHcCCC-CcEEEEEcCCCCCCC-CCCCHHHHHHHHHHHHhcCCe
Q 017967          195 NDARVPWSEYRYY--------DPKTVGLDFEGMIADIKAAPG-GSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEKNHI  264 (363)
Q Consensus       195 ~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~l~~~~~-~~~~~~i~~p~NPTG-~~~s~~~~~~i~~~~~~~~~~  264 (363)
                      ...|...+.++..        ++..+.+|++.+++++++..+ ...++++...||..| ..++.+++++|.++|++||++
T Consensus       139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~  218 (465)
T d1ax4a_         139 ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIF  218 (465)
T ss_dssp             HHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCC
T ss_pred             HHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCE
Confidence            7888887766431        233567899999999986433 344555556666553 568999999999999999999


Q ss_pred             EEEecCCC
Q 017967          265 PFFDVAYQ  272 (363)
Q Consensus       265 ii~De~y~  272 (363)
                      +++|+++.
T Consensus       219 l~~D~~~~  226 (465)
T d1ax4a_         219 VVMDSARF  226 (465)
T ss_dssp             EEEECTTH
T ss_pred             EEEECcch
Confidence            99999974

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.22  E-value=1.5e-10  Score=109.87  Aligned_cols=165  Identities=13%  Similarity=0.036  Sum_probs=110.8

Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEec-ccCCCCCCCHHHHHHHHHcC--CCCcEEE
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRY-YDPKTVGLDFEGMIADIKAA--PGGSFIL  233 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~l~~~--~~~~~~~  233 (363)
                      ..|++.++.++....+...+++.|+++.-.++.+...+...|++.+.++. .+++++.+|+++|++.+.+.  ...+.++
T Consensus       136 ~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v  215 (434)
T d2z67a1         136 PISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCV  215 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEE
Confidence            34444454444222222337899999999999999999999999888864 23456789999999999752  2346677


Q ss_pred             EEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccc
Q 017967          234 LHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERI  313 (363)
Q Consensus       234 ~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~Rv  313 (363)
                      +..+|++++|...+   +++|.++|+++|+++++|++|.......    .......... .-.+++.|+.|.++. +...
T Consensus       216 ~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~----~~~~~~~~~~-~~D~~~~s~hK~l~~-~~g~  286 (434)
T d2z67a1         216 LSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY----LEKLKKAFKY-RVDAVVSSSDKNLLT-PIGG  286 (434)
T ss_dssp             EEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH----HHHHHHHHTS-CCSEEEEEHHHHHCC-CSSC
T ss_pred             EeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhc----cccccccccC-CcceEEEcCcccccc-CCCc
Confidence            77889999998765   6677888999999999999987543110    0011111222 334668899998874 4444


Q ss_pred             eEEEEeeCChhHHHHHHHHHHhh
Q 017967          314 GAMNVVCSSSDLAARVKSQLKRL  336 (363)
Q Consensus       314 G~i~~v~~~~~~~~~~~~~l~~~  336 (363)
                      |++  ...+++    +++++...
T Consensus       287 ~~~--~~~~~~----~~~~~~~~  303 (434)
T d2z67a1         287 GLV--YSTDAE----FIKEISLS  303 (434)
T ss_dssp             EEE--EESCHH----HHHHHHTT
T ss_pred             ccc--ccCcHH----HHHHHHhh
Confidence            556  667776    44444433

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=4.4e-10  Score=104.76  Aligned_cols=192  Identities=14%  Similarity=0.097  Sum_probs=129.3

Q ss_pred             CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh----hCCCC
Q 017967          125 IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN----DARVP  200 (363)
Q Consensus       125 ~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~----~~G~~  200 (363)
                      ......|.++++++..+        +..++  +++|..|+..+   +..+.+||.|++....|.+....++    +.|++
T Consensus        54 nPT~~~lE~~la~LE~~--------~~a~~--~sSGmaAi~~~---l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~  120 (393)
T d1n8pa_          54 NPNRENLERAVAALENA--------QYGLA--FSSGSATTATI---LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE  120 (393)
T ss_dssp             CHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHHHHHH---HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSC
T ss_pred             ChHHHHHHHHHHHHhCC--------ceEEE--ecCchhHHHhh---hhcccCCCeeeeeeeecccchhhhhhhhhcccce
Confidence            44566788888888322        34444  78888886543   5667899999999999988877664    66777


Q ss_pred             eEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHH-HHhcCCeEEEecCCCCCcCCCC
Q 017967          201 WSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV-IQEKNHIPFFDVAYQGFASGSL  279 (363)
Q Consensus       201 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~-~~~~~~~ii~De~y~~~~~~~~  279 (363)
                      +..++        .+.++++++++   ++++++++-+|.||+..+...+.+.+++.- +.++|+++|+|+.|.....-. 
T Consensus       121 ~~~~~--------~~~~~~~~~i~---~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~-  188 (393)
T d1n8pa_         121 TSFTN--------DLLNDLPQLIK---ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISN-  188 (393)
T ss_dssp             CEEES--------SHHHHHHHHSC---SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCC-
T ss_pred             eEEee--------cchHHHHHHhh---hhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCC-
Confidence            76653        24567888776   467888889999999999876555444321 127899999999986433211 


Q ss_pred             CCchhHHHHHHhcCCeEEEEEcCcccccc-ccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          280 DNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       280 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~l-~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                           +    ++.+ -.|++.|.+|.++- ...-.|.+  +..+++    +.+.++..........+++...++.+.|+
T Consensus       189 -----P----l~~G-ADiVvhS~TKyi~GhsDv~~G~v--~~~~~~----~~~~l~~~~~~~G~~~~p~~a~ll~rgl~  251 (393)
T d1n8pa_         189 -----P----LNFG-ADIVVHSATKYINGHSDVVLGVL--ATNNKP----LYERLQFLQNAIGAIPSPFDAWLTHRGLK  251 (393)
T ss_dssp             -----G----GGGT-CSEEEEETTTTTTCSSCCCCEEE--EESCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred             -----c----hhhC-CCEEEEccccccCCCCcccccee--eecchh----HHHHHHHHHhhcCCCCChHHHHHHHhCCc
Confidence                 1    1222 34889999999953 33445655  556566    34444444444555778888877776554

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.16  E-value=1.2e-10  Score=105.25  Aligned_cols=172  Identities=13%  Similarity=-0.044  Sum_probs=121.8

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      |..++|+...+      ....|.|.+++.+.... ....|++.....++|+.+|+++..       +..+++  |+|||+
T Consensus         2 ~~~~~f~s~n~------~g~~P~v~~A~~~a~~~-~~~~~~~~~~~~~l~~~la~~~g~-------~~~v~f--~~sGt~   65 (345)
T d1v72a1           2 PPALGFSSDNI------AGASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFER-------DVEVFL--VPTGTA   65 (345)
T ss_dssp             CCCCBCSCGGG------CCCCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHTS-------CCEEEE--ESCHHH
T ss_pred             CCCcCcCCCCC------CCCCHHHHHHHHHHhcc-CccccCCCHHHHHHHHHHHHHHCC-------CcEEEE--CCchHH
Confidence            35567774332      12367788888765432 336687888889999999999743       356766  899999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHH---HHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCC----CCcEEEEE
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKN---IFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAP----GGSFILLH  235 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~----~~~~~~~i  235 (363)
                      |..++  +...+.+++.+++.......+..   .....+..+..++.  ..+...+++.+++.+....    .....++.
T Consensus        66 An~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  141 (345)
T d1v72a1          66 ANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD--GPAAKLDIVRLRERTREKVGDVHTTQPACVS  141 (345)
T ss_dssp             HHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC--CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEE
T ss_pred             HHHHH--HHHHHhcCCccccccccceeeechhhHHHhcCcccccccc--cccccccHHHhhhhhcccccccccccceeee
Confidence            98877  44445677777776655433322   23345666666543  3456789999999887522    12345666


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCC
Q 017967          236 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGF  274 (363)
Q Consensus       236 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~  274 (363)
                      +++.|++|...+.++++++.++|+++|+++++|+++...
T Consensus       142 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~  180 (345)
T d1v72a1         142 ITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFAN  180 (345)
T ss_dssp             EESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred             eeccccccccccchhhhhHHHHHHhcCceeeecccccce
Confidence            778899999999999999999999999999999997543

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.15  E-value=2.5e-10  Score=101.97  Aligned_cols=159  Identities=13%  Similarity=-0.026  Sum_probs=108.1

Q ss_pred             ccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEE
Q 017967          102 VLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVL  181 (363)
Q Consensus       102 ~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vl  181 (363)
                      ..|.|.+++.+.... ....|++..+..++|+.+|+++...      +++|++  |+|||+|+.++  +...+.+++.++
T Consensus        12 ~~P~v~eAl~~~~~~-~~~~y~~~~~~~~lr~~ia~~~g~~------~~~v~~--tsggtean~~a--~~~~~~~~~~~~   80 (340)
T d1svva_          12 MHPKILDLMARDNMT-QHAGYGQDSHCAKAARLIGELLERP------DADVHF--ISGGTQTNLIA--CSLALRPWEAVI   80 (340)
T ss_dssp             CCHHHHHHHHHHTTC-CCCSTTCSHHHHHHHHHHHHHHTCT------TSEEEE--ESCHHHHHHHH--HHHHCCTTEEEE
T ss_pred             CCHHHHHHHHHHhhc-CCCCCCCCHHHHHHHHHHHHHhCCC------cceEEE--cCCHHHHHHHH--HHHHhhhccccc
Confidence            356788888775533 3367888888999999999997532      578988  99999998887  555677999999


Q ss_pred             EcCCCCcchHHHHh--hCCCCeEEEecccCCCCCCCHHHHHHHHHcC---CCCcEEEEEcCCCCCCCCCCCHHHHHHHHH
Q 017967          182 ISSPTWGNHKNIFN--DARVPWSEYRYYDPKTVGLDFEGMIADIKAA---PGGSFILLHGCAHNPTGIDPTPEQWEKIAD  256 (363)
Q Consensus       182 v~~P~y~~~~~~~~--~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~  256 (363)
                      +..+.+..+.....  ..+........   .....+.+.........   ......++++...|.+|.+...+++..+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (340)
T d1svva_          81 ATQLGHISTHETGAIEATGHKVVTAPC---PDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISA  157 (340)
T ss_dssp             EETTSHHHHSSTTHHHHTTCCEEEECC---TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHH
T ss_pred             cccccceeeeecccccccceeeeeccc---ccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhc
Confidence            98888766543322  33333333332   12233444444433321   112333344444566777888999999999


Q ss_pred             HHHhcCCeEEEecCCCCC
Q 017967          257 VIQEKNHIPFFDVAYQGF  274 (363)
Q Consensus       257 ~~~~~~~~ii~De~y~~~  274 (363)
                      .|++++.+++.|++|...
T Consensus       158 ~~~~~g~~~~~d~a~~~~  175 (340)
T d1svva_         158 SCKEHGLYLFLDGARLAS  175 (340)
T ss_dssp             HHHHHTCEEEEECTTHHH
T ss_pred             ccccccceeeeeccceee
Confidence            999999999999998543

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.09  E-value=4.7e-10  Score=104.31  Aligned_cols=195  Identities=14%  Similarity=0.044  Sum_probs=129.1

Q ss_pred             ccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC--
Q 017967          100 PYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG--  177 (363)
Q Consensus       100 ~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g--  177 (363)
                      |.+.+.-.+++.+.++.+.   |....-..+|.+.+++++..        .++++  +.+||.|+.++...+. ..+|  
T Consensus         8 p~~~~~~~~~v~~~l~~~~---~~~G~~v~~fE~~~~~~~g~--------k~ai~--~~Sgt~Al~~al~al~-~~~~~~   73 (371)
T d2fnua1           8 PCLDKEDKKAVLEVLNSKQ---LTQGKRSLLFEEALCEFLGV--------KHALV--FNSATSALLTLYRNFS-EFSADR   73 (371)
T ss_dssp             CCCCHHHHHHHHHHHTSSC---CSSSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHHHHHSS-CCCTTS
T ss_pred             CCCCHHHHHHHHHHHcCCC---ccCCHHHHHHHHHHHHHHCc--------CeEEE--EecHHHHHHHHHHHhc-ccCCCC
Confidence            4445556667777775533   44444578999999999744        35655  8999999888832221 2244  


Q ss_pred             CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHH
Q 017967          178 AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV  257 (363)
Q Consensus       178 d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~  257 (363)
                      |.|+++.-+|......+...|++++.++++.  +..++.+.+++.+.   ++++++++.   +--|....   +.+|.++
T Consensus        74 ~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~--~~~~~~~~~~~~~~---~~t~avi~v---h~~G~~~~---~~~i~~~  142 (371)
T d2fnua1          74 NEIITTPISFVATANMLLESGYTPVFAGIKN--DGNIDELALEKLIN---ERTKAIVSV---DYAGKSVE---VESVQKL  142 (371)
T ss_dssp             CEEEECSSSCTHHHHHHHHTTCEEEECCBCT--TSSBCGGGSGGGCC---TTEEEEEEE---CGGGCCCC---HHHHHHH
T ss_pred             CeeecccccccccceeeeccCcccccccccc--cccccchhhhhhcc---chhhccccc---cccccccc---ccccccc
Confidence            4899999999999999999999999999853  34566677776655   345455433   34465544   4566777


Q ss_pred             HHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHH
Q 017967          258 IQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVK  330 (363)
Q Consensus       258 ~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~  330 (363)
                      |+++++.+|+|.+......-..   . ..   ...++-.++....+|.++ +|. -|.+  ++.+++..+++.
T Consensus       143 ~~~~~i~lIEDaaqa~Ga~~~~---~-~~---G~~g~~~~~Sf~~~K~l~-~g~-GG~i--~t~~~~~~~~~~  204 (371)
T d2fnua1         143 CKKHSLSFLSDSSHALGSEYQN---K-KV---GGFALASVFSFHAIKPIT-TAE-GGAV--VTNDSELHEKMK  204 (371)
T ss_dssp             HHHHTCEEEEECTTCTTCEETT---E-ET---TSSSSEEEEECCTTSSSC-CSS-CEEE--EESCHHHHHHHH
T ss_pred             ccccchhhccchhhccCceecc---c-cC---Cccccccccccccccccc-ccc-ceEE--Eeechhhhhhcc
Confidence            9999999999999544322110   0 00   123344555556699997 455 6877  888888554443

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.03  E-value=6.5e-10  Score=104.07  Aligned_cols=200  Identities=10%  Similarity=-0.027  Sum_probs=124.4

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC--------CcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP--------IEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~--------~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      ++|-|..|.      ..+++..+.++..+.+.... .+...        ..-..+.|+.+|+++...      +++|++ 
T Consensus        27 ~~iYLd~as------~g~~p~~v~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~e~~R~~iA~llga~------~~ei~~-   92 (404)
T d1qz9a_          27 GVIYLDGNS------LGARPVAALARAQAVIAEEW-GNGLIRSWNSAGWRDLSERLGNRLATLIGAR------DGEVVV-   92 (404)
T ss_dssp             TCEECCTTT------SCCCBTTHHHHHHHHHHTCC-CCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC------TTSEEE-
T ss_pred             CCEEcCCcc------cccCCHHHHHHHHHHHHHHh-cccCcccccchhHHHHHHHHHHHHHHHhCCC------CCcEEE-
Confidence            566665443      35567777777777653211 11100        112346888888886544      789988 


Q ss_pred             eccchhHHHHHHHHH----HHHhCCCCEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcE
Q 017967          156 QGLSGTGSLRLAAAL----IERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSF  231 (363)
Q Consensus       156 ~t~ggt~al~l~~~l----~~~~~~gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~  231 (363)
                       |.++|.++.++...    .....+|+.|++.+-.+..........+.++..++.+  .+...+++.++++++   ++++
T Consensus        93 -~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~---~~T~  166 (404)
T d1qz9a_          93 -TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYT--LRLVDSPEELPQAID---QDTA  166 (404)
T ss_dssp             -CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE--EEEESSGGGHHHHCS---TTEE
T ss_pred             -ecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeecee--ccccccchhHHHhcC---CCce
Confidence             99999998776321    1123578888888877665544443333333222221  123457788888887   4688


Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccc
Q 017967          232 ILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (363)
Q Consensus       232 ~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~  311 (363)
                      +++++..+|.||..++.++   |+++|+++++.+++|.+...-... .     .+    +.....+++.|..|.++.+.-
T Consensus       167 lV~i~~v~~~tG~~~pv~~---i~~~~~~~~~~~~vD~~q~~g~~~-~-----~~----~~~~~d~~~~s~~K~~~~~~g  233 (404)
T d1qz9a_         167 VVMLTHVNYKTGYMHDMQA---LTALSHECGALAIWDLAHSAGAVP-V-----DL----HQAGADYAIGCTYKYLNGGPG  233 (404)
T ss_dssp             EEEEESBCTTTCBBCCHHH---HHHHHHHHTCEEEEECTTTTTTSC-C-----CH----HHHTCSEEEECSSSTTCCCTT
T ss_pred             EEEEecccccccceecHHH---HhccccccccceeEEeeccccccc-c-----cc----ccccceEEEEechhhcccCCc
Confidence            9999999999999998655   566699999999999994433222 1     11    112345677788887753333


Q ss_pred             cceEE
Q 017967          312 RIGAM  316 (363)
Q Consensus       312 RvG~i  316 (363)
                      -.|++
T Consensus       234 ~~g~~  238 (404)
T d1qz9a_         234 SQAFV  238 (404)
T ss_dssp             CCCEE
T ss_pred             eEEEE
Confidence            35666

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.1e-09  Score=99.95  Aligned_cols=188  Identities=10%  Similarity=0.046  Sum_probs=122.5

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~  175 (363)
                      |+..+++.|++++..   ... .+..+  .....+.|+.+++++....     +..|++  +.|||++++.+  +..++.
T Consensus        26 GP~~~~~~Vl~am~~---~~i-~HRs~~f~~i~~ea~~~l~~llg~~~-----~~~ii~--~gsgT~a~~~~--i~~l~~   92 (388)
T d1h0ca_          26 GPSNLPPRIMAAGGL---QMI-GSMSKDMYQIMDEIKEGIQYVFQTRN-----PLTLVI--SGSGHCALEAA--LVNVLE   92 (388)
T ss_dssp             SCCCCCHHHHHHHTC---CCC-CTTSHHHHHHHHHHHHHHHHHHTCCC-----SEEEEE--SSCHHHHHHHH--HHHHCC
T ss_pred             CCCCCCHHHHHHhCc---CCC-CCCCHHHHHHHHHHHHHHHHHhCCCC-----CcEEEE--cCcHHHHHHHH--HHHhhc
Confidence            456678888877532   111 22222  2335778888888875431     234655  89999999988  566788


Q ss_pred             CCCEEEEcCCCCcchHHH--HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          176 PGAKVLISSPTWGNHKNI--FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~~~~~--~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      +|+++++...++......  +...+..+..+..  .....+|.+.+++.+..  .+++++.+++.+|.||...+.+   +
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~n~tG~i~pi~---~  165 (388)
T d1h0ca_          93 PGDSFLVGANGIWGQRAVDIGERIGARVHPMTK--DPGGHYTLQEVEEGLAQ--HKPVLLFLTHGESSTGVLQPLD---G  165 (388)
T ss_dssp             SSCCEEECBSSHHHHHHHHHHHHHC--CBCCBC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCT---T
T ss_pred             cCCceeeecccceeeeecccccccccccccccc--CCccccchHHHHHHhcc--CCcceEEEeeeeeccccccCHH---H
Confidence            999999999887655433  3456666666665  34567888888887765  2355777788899999998755   4


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      |.++|+++|+++++|.+.. +.....+         ++...-.+++.|.-|.++.++ .+|++
T Consensus       166 i~~~~~~~g~~~~vD~~qs-~g~~~~d---------~~~~~~D~~~~s~~K~~~gp~-g~~~~  217 (388)
T d1h0ca_         166 FGELCHRYKCLLLVDSVAS-LGGTPLY---------MDRQGIDILYSGSQKALNAPP-GTSLI  217 (388)
T ss_dssp             HHHHHHTTTCEEEEECTTT-TTTSCCC---------TTTTTCSEEEEESSSTTCCCT-TCEEE
T ss_pred             HHHHhhcccccceeccccc-ccccccc---------ccccccceecccccccccCCC-ceEEE
Confidence            5666999999999999843 3221111         112233466777788776443 25655

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=1.4e-08  Score=96.53  Aligned_cols=230  Identities=13%  Similarity=0.036  Sum_probs=144.9

Q ss_pred             HHHhcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCccc-CCcEE
Q 017967           75 EAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-EQRVA  153 (363)
Q Consensus        75 ~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-~~~i~  153 (363)
                      ...-.++++ .+||....      +++..+.+.+.+...++... ..+.......++.+.+.+++..-.+.+-. .+...
T Consensus        46 d~l~~dg~~-~~n~asf~------~t~~~~~~~~l~~~~~~~N~-~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~  117 (450)
T d1pmma_          46 DELYLDGNA-RQNLATFC------QTWDDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAV  117 (450)
T ss_dssp             HHGGGSCCG-GGBCSCCS------CCCCCHHHHHHHHHTTTCBT-TCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCS
T ss_pred             HHhccCCCc-cccccccc------cCCCCHHHHHHHHHHHhcCC-CCcccCccHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence            344445553 35666443      24556677776666553322 22222334455666555555443333211 11222


Q ss_pred             EEeccchhHHHHHHHHHHHHh---------CCC-CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHH
Q 017967          154 TVQGLSGTGSLRLAAALIERY---------FPG-AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADI  223 (363)
Q Consensus       154 ~~~t~ggt~al~l~~~l~~~~---------~~g-d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l  223 (363)
                      ...|.|||+|+.++....+..         .++ ..++++...+..+...++..|++++.+|.+ +.++.+|++.+++.+
T Consensus       118 G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~-~~~~~~d~~~L~~~i  196 (450)
T d1pmma_         118 GTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMR-PGQLFMDPKRMIEAC  196 (450)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCB-TTBCSCCHHHHHHHC
T ss_pred             CeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeec-CCCCcCcHHHHHHHh
Confidence            233899999988774322110         122 357788888889999999999999999985 346899999999998


Q ss_pred             HcCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHH---HHhcCCeEEEecCCCCCcC--CCCCCchhHHHHHHhcCCeEEE
Q 017967          224 KAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV---IQEKNHIPFFDVAYQGFAS--GSLDNDASSVRLFATRGMELLV  298 (363)
Q Consensus       224 ~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~---~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~~vi~  298 (363)
                      .   +.+++++.+.++|.||.+-+.+++.+|++.   |+++|+++.+|.+|.++..  ..... .+.    .....-..+
T Consensus       197 ~---~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~-~~~----~~~~~aDSi  268 (450)
T d1pmma_         197 D---ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDI-VWD----FRLPRVKSI  268 (450)
T ss_dssp             C---TTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC-CCS----TTSTTEEEE
T ss_pred             h---hCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhh-hhh----hcccceeEe
Confidence            7   457788888899999999999877766654   6778999999999987632  11000 000    011123456


Q ss_pred             EEcCccccccccccceEEEEeeCChh
Q 017967          299 AQSYSKNLGLYAERIGAMNVVCSSSD  324 (363)
Q Consensus       299 ~~S~SK~~~l~G~RvG~i~~v~~~~~  324 (363)
                      ..|..|.++ .-..+||+  +..+++
T Consensus       269 ~~s~HK~~~-~p~g~g~l--~~r~~~  291 (450)
T d1pmma_         269 SASGHKFGL-APLGCGWV--IWRDEE  291 (450)
T ss_dssp             EEETTTTTC-CCSSCEEE--EESSGG
T ss_pred             ecChhhccC-CCCCeeEE--EecChh
Confidence            778899765 45568999  666554

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=7.3e-09  Score=99.04  Aligned_cols=140  Identities=11%  Similarity=0.096  Sum_probs=105.4

Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCC---------CEEEEcCCCCcch
Q 017967          120 KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPG---------AKVLISSPTWGNH  190 (363)
Q Consensus       120 ~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~g---------d~Vlv~~P~y~~~  190 (363)
                      ..|+...+..+|.+++++++ +.       +.++.  +.+|+.|..++...+  +.+|         +.+.+....|...
T Consensus        68 ~~Y~~~~~~~~le~~~a~l~-G~-------~~~~~--~~sGt~A~~~a~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~  135 (467)
T d2v1pa1          68 EAFSGSRSYYALAESVKNIF-GY-------QYTIP--THQGRGAEQIYIPVL--IKKREQEKGLDRSKMVAFSNYFFDTT  135 (467)
T ss_dssp             CCSSSCHHHHHHHHHHHHHT-CC-------SEEEE--ECSSTTTHHHHHHHH--HHHHHHHHCCCTTTCEEEESSCCHHH
T ss_pred             hhhcCCchHHHHHHHHHHHH-CC-------CEEEE--CCCCHHHHHHHHHHH--hhccceEecCCCCcEEEEeccccccc
Confidence            56888889999999999995 32       45655  899999998884433  3333         3466666777777


Q ss_pred             HHHHhhCCCCeEEEecccC--------CCCCCCHHHHHHHHHcCC-CCcEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHh
Q 017967          191 KNIFNDARVPWSEYRYYDP--------KTVGLDFEGMIADIKAAP-GGSFILLHGCAHNPT-GIDPTPEQWEKIADVIQE  260 (363)
Q Consensus       191 ~~~~~~~G~~~~~v~~~~~--------~~~~~d~~~l~~~l~~~~-~~~~~~~i~~p~NPT-G~~~s~~~~~~i~~~~~~  260 (363)
                      .......|..++.++....        ....+|++.+++.+.+.. +...++++.+.+|.. |.+++.+++++|.++|++
T Consensus       136 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~  215 (467)
T d2v1pa1         136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK  215 (467)
T ss_dssp             HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence            7778889999888875321        135789999999987633 334555556666654 788899999999999999


Q ss_pred             cCCeEEEecCC
Q 017967          261 KNHIPFFDVAY  271 (363)
Q Consensus       261 ~~~~ii~De~y  271 (363)
                      ||+++++|++.
T Consensus       216 ~g~~l~~D~a~  226 (467)
T d2v1pa1         216 YDIPVVMDSAR  226 (467)
T ss_dssp             TTCCEEEECTT
T ss_pred             cCCEEEEechh
Confidence            99999999995

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=6.5e-08  Score=89.49  Aligned_cols=199  Identities=12%  Similarity=0.022  Sum_probs=121.5

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCCC--cchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHh-
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLPI--EGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERY-  174 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~-  174 (363)
                      |+..+++.|.+++..   ... .+|.+.  ....+.++.+.+.+...  .+.+++.|++  |.|||++++++  +..++ 
T Consensus        10 GP~~v~~~V~~Am~~---~~~-~hr~~~f~~~~~~~~~~~r~~~~~~--~~~~~~~i~~--t~sgT~a~~~~--~~~l~~   79 (382)
T d2bkwa1          10 GPIILSGAVQKALDV---PSL-GHTSPEFVSIFQRVLKNTRAVFKSA--AASKSQPFVL--AGSGTLGWDIF--ASNFIL   79 (382)
T ss_dssp             SSCCCCHHHHHTTSC---CCC-CTTSHHHHHHHHHHHHHHHHHTTCC--GGGTCEEEEE--ESCTTHHHHHH--HHHHSC
T ss_pred             CCCCCCHHHHHHhCc---ccC-CCCcHHHHHHHHHHHHHHHHHHhhh--cCCCCeEEEE--eCcHHHHHHHH--HHHHHH
Confidence            556677888876421   111 223221  11123334444433211  1223456766  99999999998  44443 


Q ss_pred             --CCCCEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHH
Q 017967          175 --FPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQ  250 (363)
Q Consensus       175 --~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~  250 (363)
                        .+||+|++..-.+...  ...++..|..+..+... +.+...+.+.+++.+..  .++.+++++..+|.||...+.++
T Consensus        80 ~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~~~~  156 (382)
T d2bkwa1          80 SKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSDLKA  156 (382)
T ss_dssp             TTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEECCHHH
T ss_pred             hcCCCCceEEEEechhhhhhhhhcccccccccccccc-CCCCccchhHHHHHhhh--ccchheeeeeccccccccccchh
Confidence              4899999988766543  33456778877766542 34566788888888765  34557777888999999999877


Q ss_pred             HHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc-ccccccceEEEEeeCChhH
Q 017967          251 WEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDL  325 (363)
Q Consensus       251 ~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~l~G~RvG~i~~v~~~~~~  325 (363)
                      +.+++. ++.+++++++|.+ +.+...+.+         .+...-.+++.|--|.+ |.+|  +|++  +.. ++.
T Consensus       157 ~~~~~~-~~~~~~~~~vDa~-qs~g~~pid---------~~~~giD~~~~s~~K~l~gP~G--~g~l--~vs-~~~  216 (382)
T d2bkwa1         157 ISQAIK-QTSPETFFVVDAV-CSIGCEEFE---------FDEWGVDFALTASQKAIGAPAG--LSIS--LCS-SRF  216 (382)
T ss_dssp             HHHHHH-HHCTTSEEEEECT-TTTTTSCCC---------TTTTTCSEEEEESSSTTCCCSC--EEEE--EEC-HHH
T ss_pred             hhhhcc-ccccceeeeeecc-ccccccccc---------ccccCeeEEeecccccCcCCCc--hhhh--hcc-HHH
Confidence            766522 3344699999999 433322111         11223346677889988 6677  5777  554 553

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.86  E-value=1.9e-08  Score=92.28  Aligned_cols=189  Identities=13%  Similarity=-0.018  Sum_probs=115.3

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~  175 (363)
                      |+..+++.|++++..   . ....+.+  ..-..+.|+.+++++...      +++..++.|.|||++++++  +..+..
T Consensus         7 GP~~~~~~V~~A~~~---~-~~~~~~~~~~~~~~~~r~~l~~l~~~~------~~~~~i~~t~s~T~~~~~~--~~~l~~   74 (361)
T d1m32a_           7 GPLTTSRTVKEAMLF---D-SCTWDDDYNIGVVEQIRQQLTALATAS------EGYTSVLLQGSGSYAVEAV--LGSALG   74 (361)
T ss_dssp             SSCCCCHHHHHTTCC---C-CCTTSHHHHTTTHHHHHHHHHHHHCSS------SSEEEEEEESCHHHHHHHH--HHHSCC
T ss_pred             CCCCCCHHHHHHhhh---h-ccCCCcHHHHHHHHHHHHHHHHHhCCC------CCCEEEEECCCHHHHHHHH--HHHhhh
Confidence            445567778776421   1 1122221  234578899999987543      4553344488999999988  556666


Q ss_pred             CCCEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          176 PGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      +++.+++....+...  ....+..+.....+....  ....+.+..+..... ..+++++.++.-+|-||..++.++   
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~tG~~~~i~~---  148 (361)
T d1m32a_          75 PQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE--VARPDVQAIDAILNA-DPTISHIAMVHSETTTGMLNPIDE---  148 (361)
T ss_dssp             TTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT--TSCCCHHHHHHHHHH-CTTCCEEEEESEETTTTEECCHHH---
T ss_pred             hccccceeeehhhhhhHHHHhhhhhcccccccccc--cCCccchhhHHHHHh-ccCccceEEEeeecccccchhhhh---
Confidence            777777776655332  223445566665555422  222333322222222 245667788899999999987655   


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc-ccccceEE
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL-YAERIGAM  316 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l-~G~RvG~i  316 (363)
                      |.++|+++|+++++|.+..--... .+         ++...-.+++.|..|.++. +|  +|++
T Consensus       149 i~~~~~~~g~~~~vDa~qs~G~~~-~d---------~~~~~~D~~~~s~~K~l~gp~G--~g~l  200 (361)
T d1m32a_         149 VGALAHRYGKTYIVDAMSSFGGIP-MD---------IAALHIDYLISSANKCIQGVPG--FAFV  200 (361)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTSC-CC---------TTTTTCSEEEEESSSTTCCCSS--EEEE
T ss_pred             hhhhhcccceeeEeecccccCccc-cc---------ccccccceEEeeecccccCCCC--ceEE
Confidence            566799999999999996533221 11         1233456788888998843 46  5766

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=98.78  E-value=2.2e-07  Score=87.53  Aligned_cols=240  Identities=16%  Similarity=0.138  Sum_probs=139.7

Q ss_pred             CCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhH
Q 017967           83 EKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTG  162 (363)
Q Consensus        83 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~  162 (363)
                      ..+||+..|.-...-|.  -.|.|.+++.+.++... ....+.    .....+++.+.....   ..+.+.+  +.+|++
T Consensus        52 ~~ylD~~~~~~~~~lGh--~hp~i~~ai~~~~~~~~-~~~~~~----~~~~~la~~~~~~~~---~~~~v~f--~~sGse  119 (427)
T d2gsaa_          52 NRYIDYVGTWGPAICGH--AHPEVIEALKVAMEKGT-SFGAPC----ALENVLAEMVNDAVP---SIEMVRF--VNSGTE  119 (427)
T ss_dssp             CEEEESSGGGTTTTTCB--TCHHHHHHHHHHHTTCS-CCSSCC----HHHHHHHHHHHHHST---TCSEEEE--ESSHHH
T ss_pred             CEEEEechhHHHHhccC--CcHHHHHHHHHHHHhcC-ccccch----hHHHHHHHHHHhhCC---ccccccc--cCCcHH
Confidence            37899977643222233  35677777777665422 212222    233344444433221   1357766  899999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH--------hhCCC------------CeEEEecccCCCCCCCHHHHHHH
Q 017967          163 SLRLAAALIERYFPGAKVLISSPTWGNHKNIF--------NDARV------------PWSEYRYYDPKTVGLDFEGMIAD  222 (363)
Q Consensus       163 al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~--------~~~G~------------~~~~v~~~~~~~~~~d~~~l~~~  222 (363)
                      |++.+..+...+....+|+...-+|.+....+        ...+.            +...++       .-|++.+++.
T Consensus       120 A~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~le~~  192 (427)
T d2gsaa_         120 ACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP-------YNDLEAVKAL  192 (427)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC-------TTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC-------cchHHHHHHH
Confidence            99999776655545578888888886542211        11111            111111       3588999999


Q ss_pred             HHcCCCCcEEEEEcCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEE
Q 017967          223 IKAAPGGSFILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQ  300 (363)
Q Consensus       223 l~~~~~~~~~~~i~~p-~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  300 (363)
                      +++.+.+...+++ .| +--.|. ..+.+-+++|.++|+++|+++|.||+..+|..+.    ......+ +-.++++   
T Consensus       193 ~~~~~~~iaavi~-Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~----~~~~~~~-gi~PDi~---  263 (427)
T d2gsaa_         193 FAENPGEIAGVIL-EPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAY----GGVQEKF-GVTPDLT---  263 (427)
T ss_dssp             HTTSTTTEEEEEE-CSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT----TCHHHHT-TCCCSEE---
T ss_pred             HHhCCCCeEEEEE-cCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecc----cchHHhc-CCCHHHH---
Confidence            9876555555554 44 222354 4566778999999999999999999998885432    2333322 3334444   


Q ss_pred             cCccccccccccceEEEEeeCChhHHHHHHHHHHhhh---ccccCCCchHHHHHHhccccc
Q 017967          301 SYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA---RPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       301 S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      .++|.+| .|+-+|.+  ++. ++    +.+.+....   -...++.++++..++...|+.
T Consensus       264 ~~gK~lg-gG~p~~a~--~~~-~~----i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~  316 (427)
T d2gsaa_         264 TLGKIIG-GGLPVGAY--GGK-RE----IMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL  316 (427)
T ss_dssp             EECGGGG-TTSCCEEE--EEC-HH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHH
T ss_pred             hhhhccC-CCcceeee--eeh-HH----HHHHhcccCCCcCCCCCCCCchhhHHHHHhhHH
Confidence            3578887 78888888  654 55    444333211   112335566666666555443

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=98.75  E-value=1.4e-07  Score=87.19  Aligned_cols=187  Identities=11%  Similarity=0.039  Sum_probs=121.6

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~  175 (363)
                      |+..+++.|++++..   ... .++..  ..-..+.|+.+++++...     +.+.|++  +.|||++++.+  +..++.
T Consensus        24 GP~~~~~~V~~Am~~---~~~-~hr~~ef~~i~~~~r~~L~~ll~~~-----~~~~i~~--~gsgT~a~ea~--~~~l~~   90 (388)
T d2ch1a1          24 GPSNCSKRVLTAMTN---TVL-SNFHAELFRTMDEVKDGLRYIFQTE-----NRATMCV--SGSAHAGMEAM--LSNLLE   90 (388)
T ss_dssp             SSCCCCHHHHHHTTS---CCC-CTTCHHHHHHHHHHHHHHHHHHTCC-----CSCEEEE--SSCHHHHHHHH--HHHHCC
T ss_pred             CCCCCCHHHHHHhCc---CCC-CCCCHHHHHHHHHHHHHHHHHhCCC-----CCeEEEE--cCcHHHHHHHH--HHHhcc
Confidence            556678888887532   211 33432  234567888888887542     1234544  88999999988  666677


Q ss_pred             CCCEEEEcCCCCcchH--HHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          176 PGAKVLISSPTWGNHK--NIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      +|++|++..-+.....  ..++..|...+.+..  .+....+.+..++....  .+.+++++++.+|.||...+.+++  
T Consensus        91 ~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~t~tG~~~~~~~i--  164 (388)
T d2ch1a1          91 EGDRVLIAVNGIWAERAVEMSERYGADVRTIEG--PPDRPFSLETLARAIEL--HQPKCLFLTHGDSSSGLLQPLEGV--  164 (388)
T ss_dssp             TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC--CTTSCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCTTH--
T ss_pred             ccccccccccccccccchhhhhhhccccccccc--ccccccchhhhhhhhcc--CCcceeeeeecccccccccchhhh--
Confidence            9999988877665443  345677888777776  34456777777776654  245577778889999999887655  


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccc-cccccceEE
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLG-LYAERIGAM  316 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-l~G~RvG~i  316 (363)
                       .++|++++.++++|.+.. +.....+         .+...-.+++.|--|.++ .+|  +|++
T Consensus       165 -~~~~~~~~~~~~vD~~ss-~g~~pid---------~~~~~~d~~~~s~~K~~~gp~G--~g~~  215 (388)
T d2ch1a1         165 -GQICHQHDCLLIVDAVAS-LCGVPFY---------MDKWEIDAVYTGAQKVLGAPPG--ITPI  215 (388)
T ss_dssp             -HHHHHHTTCEEEEECTTT-BTTBCCC---------TTTTTCCEEECCCC-CCCCCSS--CEEE
T ss_pred             -cchhccccceeeeeeeec-ccccccc---------hhccCceEEEEccccccCCCCe--EEEE
Confidence             455899999999999943 3322111         122234566677777664 344  4666

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.71  E-value=2.4e-07  Score=84.89  Aligned_cols=190  Identities=15%  Similarity=0.005  Sum_probs=117.2

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~  175 (363)
                      ||..+++.|++++...   .. .++.+  ..-..+.++.+++++...      .+-+++  +.|||++++.+  +.+++.
T Consensus         7 GP~~v~~~V~~am~~~---~~-~hr~~~f~~i~~~~~~~l~~ll~~~------~~~i~~--~gsgT~a~e~~--~~nl~~   72 (348)
T d1iuga_           7 GPVRLHPKALEALARP---QL-HHRTEAAREVFLKARGLLREAFRTE------GEVLIL--TGSGTLAMEAL--VKNLFA   72 (348)
T ss_dssp             SSCCCCHHHHHHHHSC---CC-CTTSHHHHHHHHHHHHHHHHHHTCS------SEEEEE--ESCHHHHHHHH--HHHHCC
T ss_pred             CCCCCCHHHHHHhcCC---CC-CCCCHHHHHHHHHHHHHHHHHhCCC------CCEEEE--eCchHHHHHHH--HHhccc
Confidence            5566788888876432   11 22222  112345566666665422      344444  89999999988  677788


Q ss_pred             CCCEEEEcCCCCcc--hHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          176 PGAKVLISSPTWGN--HKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      +||+|++..-++.+  +...++..|.++..+..  +....++++.+.      ..+...+++++..+.||...+.+++.+
T Consensus        73 ~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~--~~g~~~~~~~~~------~~~~~~v~~~h~eTstG~~~~i~~i~~  144 (348)
T d1iuga_          73 PGERVLVPVYGKFSERFYEIALEAGLVVERLDY--PYGDTPRPEDVA------KEGYAGLLLVHSETSTGALADLPALAR  144 (348)
T ss_dssp             TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCTTTSC------CSSCSEEEEESEETTTTEECCHHHHHH
T ss_pred             ccccceeecchHHHHHHHHHHHhcCcccccccc--cCCCcccccccc------ccCCCeeEEEecchhhhhhccHHHHHH
Confidence            99999888877533  34566788988888876  333444544432      123446666788899999998776655


Q ss_pred             HHHHHHhc--CCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccc-ccccccceEEEEeeCChhHHH
Q 017967          254 IADVIQEK--NHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNL-GLYAERIGAMNVVCSSSDLAA  327 (363)
Q Consensus       254 i~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~l~G~RvG~i~~v~~~~~~~~  327 (363)
                      +   |+++  +.++++|.+ +.+...+.+.         +...-.+++.|--|.+ |.+|+  |++  +.. ++.++
T Consensus       145 ~---~~~~~~~~l~~vDav-ss~g~~~i~~---------d~~~iD~~~~~sqK~l~gppG~--~~v--~~s-~~~le  203 (348)
T d1iuga_         145 A---FKEKNPEGLVGADMV-TSLLVGEVAL---------EAMGVDAAASGSQKGLMCPPGL--GFV--ALS-PRALE  203 (348)
T ss_dssp             H---HHHHCTTCEEEEECT-TTBTTBCCCS---------GGGTCSEEEEESSSTTCCCSCE--EEE--EEC-HHHHH
T ss_pred             H---HHhhhccceeechhh-hccccccccc---------ccccCCEEEeccccceecCCce--eee--eec-hHHHh
Confidence            4   7776  478888988 4433222211         1112335566669988 87885  777  554 55333

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=98.66  E-value=4.5e-07  Score=84.25  Aligned_cols=239  Identities=15%  Similarity=0.079  Sum_probs=135.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHH
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGS  163 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~a  163 (363)
                      .+||+..|.-...-|+  -.|.+.+++.+.+....   +.+..-..+.+..+++.+......  ..+++.+  +.+|++|
T Consensus        38 ~ylD~~~g~~~~~lGh--~hp~v~~a~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~f--~~sGseA  108 (387)
T d1vefa1          38 EYIDCVGGYGVANLGH--GNPEVVEAVKRQAETLM---AMPQTLPTPMRGEFYRTLTAILPP--ELNRVFP--VNSGTEA  108 (387)
T ss_dssp             EEEESSHHHHTCTTCB--TCHHHHHHHHHHHHHCC---CCCTTSCCHHHHHHHHHHHHTSCT--TEEEEEE--ESSHHHH
T ss_pred             EEEEcchhHHhhhhcC--CcHHHHHHHHHHHHhhc---ccccccCCchHHHHHHHhhhhccc--cceeecc--ccCchHH
Confidence            7888866543222232  23455555555443311   111111124555555554443211  2356777  9999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCC------------CCeEEEecccCCCCCCCHHHHHHHHHcCCCCc
Q 017967          164 LRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR------------VPWSEYRYYDPKTVGLDFEGMIADIKAAPGGS  230 (363)
Q Consensus       164 l~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  230 (363)
                      .+.+..+...+....+|+...-+|.+....+. ..|            -.+..+|.       .|++.+++.+.   +..
T Consensus       109 ~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~---~~i  178 (387)
T d1vefa1         109 NEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVD---EET  178 (387)
T ss_dssp             HHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCC---TTE
T ss_pred             HHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcC---CCe
Confidence            99997766555555789888888855432221 111            12334443       36788888775   334


Q ss_pred             EEEEEcCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc
Q 017967          231 FILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (363)
Q Consensus       231 ~~~~i~~p-~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l  308 (363)
                      ..+++ .| +.-.|. ..+++-+++|.++|+++|+++|.||+..+|.-.+.   ......+ +-.++++   .++|.++ 
T Consensus       179 Aavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~---~~~~~~~-~v~PDi~---~~gK~l~-  249 (387)
T d1vefa1         179 AAVIL-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK---RFAFEHF-GIVPDIL---TLAKALG-  249 (387)
T ss_dssp             EEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCSEE---EECGGGG-
T ss_pred             EEEEE-ECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC---CcccccC-CcCCcee---eecccCC-
Confidence            44444 43 333465 46788899999999999999999999999843221   2222222 3334444   3578887 


Q ss_pred             ccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          309 YAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       309 ~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      .|+=+|.+  +.. ++    +.+.+....-...++.++++..++...|+
T Consensus       250 gG~~~~~~--~~~-~~----~~~~~~~~~~g~T~~gnPla~aaa~a~L~  291 (387)
T d1vefa1         250 GGVPLGVA--VMR-EE----VARSMPKGGHGTTFGGNPLAMAAGVAAIR  291 (387)
T ss_dssp             TTSSCEEE--EEE-HH----HHHTSCTTSSCCSSTTCHHHHHHHHHHHH
T ss_pred             CCcccccc--ccc-ee----eeeccccCCccccCCCCcchhhhcccchh
Confidence            78877877  544 44    34433332223333556666666554443

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=98.65  E-value=4.5e-07  Score=83.22  Aligned_cols=188  Identities=14%  Similarity=0.074  Sum_probs=117.5

Q ss_pred             CCccccHHHHHHHHHHHccCCCCCCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhC
Q 017967           98 LQPYVLDVVKKAENLMLERGENKEYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYF  175 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~  175 (363)
                      |+..+++.|.+++..   ... .++..  ..-..+.|+.+++++...     +...|++  +.|||++++.+  +..++.
T Consensus        25 GP~~v~~~Vl~am~~---~~~-~hr~~ef~~i~~~~r~~l~~ll~~~-----~~~~i~~--~g~gT~~~~~~--~~~~~~   91 (377)
T d1vjoa_          25 GPSNAHPSVLQAMNV---SPV-GHLDPAFLALMDEIQSLLRYVWQTE-----NPLTIAV--SGTGTAAMEAT--IANAVE   91 (377)
T ss_dssp             SCCCCCHHHHHHHSS---CCC-CTTSHHHHHHHHHHHHHHHHHHTCC-----CSCEEEE--SSCHHHHHHHH--HHHHCC
T ss_pred             CCCCCCHHHHHHhCc---CCC-CCCCHHHHHHHHHHHHHHHHHhCCC-----CCeEEEE--cCcHHHHHHHH--HHhccc
Confidence            567788888887532   111 23332  233567788888887442     1345555  88899999988  566677


Q ss_pred             CCCEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCCCCHHHHHH
Q 017967          176 PGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEK  253 (363)
Q Consensus       176 ~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~~s~~~~~~  253 (363)
                      +|+++++..-.+...  .......+.....+..  ..+...+.+..+.....  +...++.+++.+|.||...+.+   +
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~i~---~  164 (377)
T d1vjoa_          92 PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISK--PWGEVFSLEELRTALET--HRPAILALVHAETSTGARQPLE---G  164 (377)
T ss_dssp             TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCT---T
T ss_pred             cccccceeeechhhhhhhhhhhhhccccccccc--CCCCcccchhhhhhhhc--Ccceeeeeeeeeccceeeechh---h
Confidence            999988887666443  2233455666555554  33445566666655543  2345666678889999988754   5


Q ss_pred             HHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccccceEE
Q 017967          254 IADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       254 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      |.++|+++|.++++|.+..--.. ..+         ++..+-.+++.|-.|.++.++ .+|++
T Consensus       165 i~~~~~~~g~~~~vDa~~~~g~~-~~~---------~~~~~~d~~~~s~~K~~~gp~-g~~~~  216 (377)
T d1vjoa_         165 VGELCREFGTLLLVDTVTSLGGV-PIF---------LDAWGVDLAYSCSQKGLGCSP-GASPF  216 (377)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTS-CCC---------TTTTTCSEEECCSSSTTCSCS-SCEEE
T ss_pred             hhhhhhhccceEEEecchhhhhh-hhc---------ccccccceeeecccccccCCC-EEEEe
Confidence            66669999999999999542221 111         122244566777888775343 24555

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=98.59  E-value=1.4e-07  Score=89.62  Aligned_cols=176  Identities=14%  Similarity=-0.011  Sum_probs=96.5

Q ss_pred             CCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhh-CCCC
Q 017967          122 YLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFND-ARVP  200 (363)
Q Consensus       122 Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~-~G~~  200 (363)
                      +.+..-+.++++.+|+++..        ++.++  +.+||.+.+++. +...+.|||+|+++.-++....+.... .+..
T Consensus        62 ~~~~~~i~eae~~~A~~~ga--------~~a~f--~~~Gtt~~n~a~-i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~  130 (462)
T d1c4ka2          62 LIHEGPAVAAEKHAARVYNA--------DKTYF--VLGGSSNANNTV-TSALVSNGDLVLFDRNNHKSVYNSALAMAGGR  130 (462)
T ss_dssp             TTTBTHHHHHHHHHHHHTTC--------SEEEE--ESSHHHHHHHHH-HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCE
T ss_pred             cCCCHHHHHHHHHHHHHhCC--------CeEEE--ECCchHHHHHHH-HHHhcCCCCeEEecccchHHHHHHHHHHhcCC
Confidence            43444468899999999533        44444  455544444432 455678999999999999877665543 3333


Q ss_pred             eE--EEecccCCC--CC-----CCHHHHHHHHHc-------CCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCe
Q 017967          201 WS--EYRYYDPKT--VG-----LDFEGMIADIKA-------APGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHI  264 (363)
Q Consensus       201 ~~--~v~~~~~~~--~~-----~d~~~l~~~l~~-------~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~  264 (363)
                      ++  ..++++ ..  .+     ++.+.+.+...+       .+++..++++. .+|=+|.+.+.   ++|+++|+++|+.
T Consensus       131 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~G~~~dl---~~I~~ia~~~g~~  205 (462)
T d1c4ka2         131 PVYLQTNRNP-YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQ-LGTYDGTIYNA---HEVVKRIGHLCDY  205 (462)
T ss_dssp             EEEECEEECT-TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEE-SBCTTSEEECH---HHHHHHHGGGBSE
T ss_pred             ceeeeccccc-ccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEE-eeeeccchhhH---HHHHHHHHHcCCE
Confidence            33  333321 11  11     222222221111       11223333333 34568887764   5567779999999


Q ss_pred             EEEecCCCCCcCCCCCCchhHHHHHH----hcCCeEEEEEcCccccccccccceEE
Q 017967          265 PFFDVAYQGFASGSLDNDASSVRLFA----TRGMELLVAQSYSKNLGLYAERIGAM  316 (363)
Q Consensus       265 ii~De~y~~~~~~~~~~~~~~~~~~~----~~~~~vi~~~S~SK~~~l~G~RvG~i  316 (363)
                      +++|+++........ .-..+.....    ....-.+++.|++|.+|.+  ..|.+
T Consensus       206 l~vD~A~~~~~~~~~-~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~--~~g~l  258 (462)
T d1c4ka2         206 IEFDSAWVGYEQFIP-MMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF--SQTSQ  258 (462)
T ss_dssp             EEEECTTCCGGGSSG-GGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC--TTCEE
T ss_pred             EEEechhhccccccC-cCCcchhhccccccccCCccEEEEecCcccccc--cceEE
Confidence            999999754432110 0000000000    0112368899999999744  34666

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1e-06  Score=82.23  Aligned_cols=242  Identities=11%  Similarity=0.121  Sum_probs=134.0

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC-CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE-NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      +.+++ .+||+..|.-...-|+  -.+.+.+++.+.++... ...+....-..++.+.+++.. .       .+++.+  
T Consensus        37 D~dG~-~ylD~~~g~~~~~lGh--~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~v~~--  103 (404)
T d2byla1          37 DVEGR-KYFDFLSSISAVNQGH--CHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF-N-------YHKVLP--  103 (404)
T ss_dssp             ETTCC-EEEESSHHHHTCTTCB--TCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHH-T-------CSEEEE--
T ss_pred             ECCCC-EEEEecCCHHHHhhcC--CCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcc-c-------cccccc--
Confidence            44444 7889887753222232  34567777776664321 111111222334445554442 2       267777  


Q ss_pred             ccchhHHHHHHHHHHHHhC--------CCCEEEEcCCCCcch-HHHHhh-------CC-----CCeEEEecccCCCCCCC
Q 017967          157 GLSGTGSLRLAAALIERYF--------PGAKVLISSPTWGNH-KNIFND-------AR-----VPWSEYRYYDPKTVGLD  215 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~--------~gd~Vlv~~P~y~~~-~~~~~~-------~G-----~~~~~v~~~~~~~~~~d  215 (363)
                      +.+|++|.+.+..+.....        ....++...-+|.+. ......       .+     -.+..+|.       .|
T Consensus       104 ~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d  176 (404)
T d2byla1         104 MNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------ND  176 (404)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TC
T ss_pred             ccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cC
Confidence            9999999999876654321        124566655555432 211111       11     12333333       37


Q ss_pred             HHHHHHHHHcCCCCcEEEEEcCC-CCCCC-CCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcC
Q 017967          216 FEGMIADIKAAPGGSFILLHGCA-HNPTG-IDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRG  293 (363)
Q Consensus       216 ~~~l~~~l~~~~~~~~~~~i~~p-~NPTG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~  293 (363)
                      ++.+++.+..  ++...+++ .| ..-.| ...+++-+++|.++|+++|+++|.||+..+|.-.+.   .+....+ .-.
T Consensus       177 ~~~l~~~l~~--~~iAavii-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~---~~a~~~~-gv~  249 (404)
T d2byla1         177 LPALERALQD--PNVAAFMV-EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVDYE-NVR  249 (404)
T ss_dssp             HHHHHHHHTS--TTEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TCC
T ss_pred             HHHHHHhcCC--CCeEEEEE-CCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc---cchhhhc-CCC
Confidence            8899998863  33444444 44 33345 456678899999999999999999999988843221   2222211 222


Q ss_pred             CeEEEEEcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          294 MELLVAQSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       294 ~~vi~~~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                      ++++   .|+|.++ .| +-+|.+  +.. ++    +.+.+....-...++-++++-.++...|+
T Consensus       250 PDi~---~~gK~l~-gG~~p~~av--~~~-~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~  303 (404)
T d2byla1         250 PDIV---LLGKALS-GGLYPVSAV--LCD-DD----IMLTIKPGEHFSTYGGNPLGCRVAIAALE  303 (404)
T ss_dssp             CSEE---EECGGGG-TTSSCCEEE--EEC-HH----HHTTSCTTSSCCSSTTCHHHHHHHHHHHH
T ss_pred             CCEE---EECchhh-CCCccceee--eec-hh----hhhccCCCCCCcCCCcCHHHHHHHHHHHH
Confidence            3433   7899998 56 788988  654 55    44433332222333445665555544444

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.51  E-value=1.8e-06  Score=82.18  Aligned_cols=206  Identities=10%  Similarity=-0.059  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHccCCCCCCCCCcchHHHHHHHHHHHhcCCCCccc-----CCcEEEEeccchhHHHHHHHHHHHH-----h
Q 017967          105 VVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLK-----EQRVATVQGLSGTGSLRLAAALIER-----Y  174 (363)
Q Consensus       105 ~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~-----~~~i~~~~t~ggt~al~l~~~l~~~-----~  174 (363)
                      .+.+.+........ ..|.......++.+.+.+|+.+..|.+-.     ..+-..+.|.||+.|..++....+.     .
T Consensus        89 ~l~~~~~~~~n~n~-~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~  167 (476)
T d1js3a_          89 MLADMLCGAIGCIG-FSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRL  167 (476)
T ss_dssp             HHHHHHHHHHCCCC-SSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccc-cchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhh
Confidence            33344444444322 44544556677777888887665554321     1122222389999997776322111     0


Q ss_pred             ---CCC---------CEEEEcCCCCcchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHc---CCCCcEEEEEcCCC
Q 017967          175 ---FPG---------AKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKA---APGGSFILLHGCAH  239 (363)
Q Consensus       175 ---~~g---------d~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~~~~~~i~~p~  239 (363)
                         ..|         -.|++++-++......+...|+.++.+|++  +++.+|++.|++.+++   ....+.+++.+.++
T Consensus       168 ~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d--~~~~md~~~L~~~i~~~~~~g~~p~~VvataGt  245 (476)
T d1js3a_         168 QAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGT  245 (476)
T ss_dssp             HHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSC
T ss_pred             cccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccC--CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCC
Confidence               011         157888888888999999999999999984  4689999999999975   22345667767789


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCC-eEEEEEcCccccccccccceEEEE
Q 017967          240 NPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGM-ELLVAQSYSKNLGLYAERIGAMNV  318 (363)
Q Consensus       240 NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~-~vi~~~S~SK~~~l~G~RvG~i~~  318 (363)
                      +.||.+=+   +++|.++|+++++++.+|.+|.++..-..+  ...   +...-+ -.-+..++.|.++.|. -.|.+  
T Consensus       246 t~~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~--~~~---~~~gi~~aDSit~d~HK~l~~P~-~~g~~--  314 (476)
T d1js3a_         246 TSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPE--FRH---LLNGVEFADSFNFNPHKWLLVNF-DCSAM--  314 (476)
T ss_dssp             TTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTT--TGG---GGTTGGGCSEEEECHHHHSSCCS-SCEEE--
T ss_pred             ccceeecc---HHHHHHHHHhcCcEEEEecccchhhhhhcc--hhh---hhcCCcccceeeecCccccccCC-cceee--
Confidence            99998865   555667799999999999999887543211  111   111101 1244567789887655 46777  


Q ss_pred             eeCChh
Q 017967          319 VCSSSD  324 (363)
Q Consensus       319 v~~~~~  324 (363)
                      ...++.
T Consensus       315 l~r~~~  320 (476)
T d1js3a_         315 WVKRRT  320 (476)
T ss_dssp             EESCHH
T ss_pred             cccchH
Confidence            666654

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=8.6e-07  Score=83.32  Aligned_cols=257  Identities=9%  Similarity=-0.018  Sum_probs=135.5

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC-CcchHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP-IEGLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      ..+++ .+||+..|.-...-|+  -.+.+.+++.+.+...   .+.. .....+....+|+.+...... -..+.+.+  
T Consensus        36 D~dG~-~ylD~~~g~~~~~lGh--~~p~i~~ai~~q~~~~---~~~~~~~~~~~~~~~la~~l~~~~p~-~~~~~v~f--  106 (425)
T d1sffa_          36 DVEGR-EYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKL---SHTCFQVLAYEPYLELCEIMNQKVPG-DFAKKTLL--  106 (425)
T ss_dssp             ETTCC-EEEESSHHHHTCTTCB--TCHHHHHHHHHHTTTC---SCCCTTTEECHHHHHHHHHHHHHSSC-SSCEEEEE--
T ss_pred             eCCCC-EEEEcCcCHHhhcccC--CcHHHHHHHHHHHhhc---CCcccccccCcHHHHHHHHHHhhhhh-cccceeee--
Confidence            33443 7889887743222232  3567777776665431   1211 111122333344444332110 01246766  


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-hCC-------------CCeEEEec--ccCCCCCCCHH-HH
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-DAR-------------VPWSEYRY--YDPKTVGLDFE-GM  219 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-~~G-------------~~~~~v~~--~~~~~~~~d~~-~l  219 (363)
                      +.+|++|.+.+.++........+|+...-+|.+...... ..|             ......+.  ...+....... ..
T Consensus       107 ~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (425)
T d1sffa_         107 VTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASI  186 (425)
T ss_dssp             ESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHH
T ss_pred             eccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHH
Confidence            899999999997766555555788888888866543222 221             11112221  11111111111 11


Q ss_pred             HHHH--HcCCCCcEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeE
Q 017967          220 IADI--KAAPGGSFILLHGCAHNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMEL  296 (363)
Q Consensus       220 ~~~l--~~~~~~~~~~~i~~p~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~v  296 (363)
                      ++.+  .........+++-.-+--.|. ..+++-+++|.++|+++|+++|.||+..++.-.+.   ......+ +-.+++
T Consensus       187 ~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~---~~a~~~~-gv~PDi  262 (425)
T d1sffa_         187 HRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAMEQM-GVAPDL  262 (425)
T ss_dssp             HHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGT-TSCCSE
T ss_pred             HHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch---hhHHHhc-CCCccc
Confidence            1111  112223334443322333454 56789999999999999999999999998632221   1222111 223443


Q ss_pred             EEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhccccc
Q 017967          297 LVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMNG  358 (363)
Q Consensus       297 i~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~~  358 (363)
                      +   .++|.+| .|+-+|.+  ++. ++    +.+.+........++.++++..++...|+.
T Consensus       263 ~---~~gK~l~-gG~P~~av--~~~-~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~  313 (425)
T d1sffa_         263 T---TFAKSIA-GGFPLAGV--TGR-AE----VMDAVAPGGLGGTYAGNPIACVAALEVLKV  313 (425)
T ss_dssp             E---EECGGGG-TSSCCEEE--EEE-HH----HHTTSCTTSBCCSSSSCHHHHHHHHHHHHH
T ss_pred             e---ecccccC-CCcceEEE--EEc-HH----HHHhhCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            3   3899998 68989999  655 55    444444333334456667777777665554

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.39  E-value=3.2e-06  Score=77.54  Aligned_cols=213  Identities=20%  Similarity=0.284  Sum_probs=130.9

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC---Ccc--hHH----HHHHHHHHHhcCCCCcccCCcEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEG--LAA----FNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~G--~~~----lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      +.|+|-..++       ++.+.+++++...+......+|+.   ..|  .-+    +....|+.+++.       +. +-
T Consensus        24 ~~l~LiaSEN-------~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a-------~~-an   88 (405)
T d1kl1a_          24 AKIELIASEN-------FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA-------EH-AN   88 (405)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCC-------SE-EE
T ss_pred             cCceEeccCC-------cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCC-------Cc-ce
Confidence            6788876553       346788888766553322222221   112  222    222333334443       22 22


Q ss_pred             EeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH-----HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI-----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~-----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      +|..+|+.|...+  +.+++.|||+|+..++...++...     +.....+.+.++++ .+++.+|.+++++..+.  .+
T Consensus        89 Vqp~SGs~An~av--~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d-~~~~~ID~d~l~~~a~~--~k  163 (405)
T d1kl1a_          89 VQPHSGAQANMAV--YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVD-PETHVIDYDDVREKARL--HR  163 (405)
T ss_dssp             CCCSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHHH--HC
T ss_pred             eeccCchHHHHHH--HHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccc-hhcccccHHHHHHHHHh--hC
Confidence            4678888886666  677889999999999877776432     11234567777775 45788999999999886  34


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC-CCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l  308 (363)
                      +++++...-.+|--  +   +++++.++|.+.|.+++.|-+.. ++.-++.-+++      ++. - -++..|..|+|. 
T Consensus       164 PklIi~G~S~y~r~--~---d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P------~~~-a-Dvvt~tThKtlr-  229 (405)
T d1kl1a_         164 PKLIVAAASAYPRI--I---DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP------VPY-A-HFVTTTTHKTLR-  229 (405)
T ss_dssp             CSEEEECCSSCCSC--C---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS------TTT-C-SEEEEESSSTTC-
T ss_pred             cceEEecccccccc--c---ChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCCh------hhh-h-hheecccccccc-
Confidence            55777666565543  2   46667777999999999999962 33222211111      111 2 355778999984 


Q ss_pred             ccccceEEEEeeCChhHHHHHHHHHHhhhc
Q 017967          309 YAERIGAMNVVCSSSDLAARVKSQLKRLAR  338 (363)
Q Consensus       309 ~G~RvG~i~~v~~~~~~~~~~~~~l~~~~~  338 (363)
                       |=|-|.|  .+ +++    +.+.+.....
T Consensus       230 -GPrgg~I--~~-~~~----~~~~i~~avf  251 (405)
T d1kl1a_         230 -GPRGGMI--LC-QEQ----FAKQIDKAIF  251 (405)
T ss_dssp             -CCSCEEE--EE-CHH----HHHHHHHHHT
T ss_pred             -CCCCceE--Ee-cch----hHHHHHhhhC
Confidence             8899988  65 466    4555555543

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=4.2e-06  Score=77.03  Aligned_cols=213  Identities=19%  Similarity=0.217  Sum_probs=128.3

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC---Ccch------HHHHHHHHHHHhcCCCCcccCCcEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP---IEGL------AAFNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~---~~G~------~~lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      +.|+|-..++       ++.+.+++++...+......+|+.   ..|.      ..+....|+-+++.       +. +-
T Consensus        27 ~~i~LiaSEN-------~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a-------~~-an   91 (416)
T d1dfoa_          27 EHIELIASEN-------YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGA-------DY-AN   91 (416)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC-------SE-EE
T ss_pred             cCceEecCcc-------cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCC-------Cc-ce
Confidence            6788876553       356788888766553322222321   1122      22222333334443       22 22


Q ss_pred             EeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHh-----hCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCC
Q 017967          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFN-----DARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGG  229 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~  229 (363)
                      +|..+|+.|...+  +.+++.|||+|+..++...++...-.     ....+.+.++++  .+..+|.+++++..+..  +
T Consensus        92 Vqp~SGs~AN~av--~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d--~~~~IDyd~l~~~a~~~--k  165 (416)
T d1dfoa_          92 VQPHSGSQANFAV--YTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGID--ATGHIDYADLEKQAKEH--K  165 (416)
T ss_dssp             CCCSSHHHHHHHH--HHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBC--SSSSBCHHHHHHHHHHH--C
T ss_pred             eecccCccHHHHH--HHHhcCCCCeeeeccccccccccccccccccCceEEEEecccC--CccCccHHHHHHHHHHh--c
Confidence            4668888886666  67788999999999998877754221     223455666664  35679999999988763  4


Q ss_pred             cEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC-CCcCCCCCCchhHHHHHHhcCCeEEEEEcCcccccc
Q 017967          230 SFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGL  308 (363)
Q Consensus       230 ~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l  308 (363)
                      +++++...-.+|  ..+   +++++.++|.+.|.++++|.+.. ++.-++.-++  +    ++..  -++..|..|+|. 
T Consensus       166 PklIi~G~S~y~--r~~---d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~s--P----~~~a--Dvvt~tThKtlr-  231 (416)
T d1dfoa_         166 PKMIIGGFSAYS--GVV---DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPN--P----VPHA--HVVTTTTHKTLA-  231 (416)
T ss_dssp             CSEEEEECSSCC--SCC---CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC--C----TTTS--SEEEEESSSTTC-
T ss_pred             cceEEecccccc--ccc---CHHHHHHHHHhcCceEEcchhhhhcceeccccCC--c----cccc--ceeeeehhhccc-
Confidence            456665554444  333   35666677999999999999963 2222111111  1    1222  377889999984 


Q ss_pred             ccccceEEEEeeC--ChhHHHHHHHHHHhhhc
Q 017967          309 YAERIGAMNVVCS--SSDLAARVKSQLKRLAR  338 (363)
Q Consensus       309 ~G~RvG~i~~v~~--~~~~~~~~~~~l~~~~~  338 (363)
                       |-|-|.+  .+.  +++    +.+.+.+...
T Consensus       232 -GPrggiI--~~~~~~~~----~~~~i~~avf  256 (416)
T d1dfoa_         232 -GPRGGLI--LAKGGSEE----LYKKLNSAVF  256 (416)
T ss_dssp             -CCSCEEE--EESSCCHH----HHHHHHHHHT
T ss_pred             -CCCceEE--EeccchHh----HHHHHHhhhC
Confidence             8899999  664  345    4455554443

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.34  E-value=4.6e-06  Score=78.33  Aligned_cols=249  Identities=12%  Similarity=0.050  Sum_probs=129.4

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCC--CCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGE--NKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      +.+++ .+||+..|.-...-|+  -.+.+.+++.+.++...  ...+ ......+|-+.+++..    ..  .-+++.+ 
T Consensus        37 D~dG~-~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~~~~-~~~~~~~la~~L~~~~----~~--~~~~v~f-  105 (431)
T d1zoda1          37 DADGR-AILDFTSGQMSAVLGH--CHPEIVSVIGEYAGKLDHLFSEM-LSRPVVDLATRLANIT----PP--GLDRALL-  105 (431)
T ss_dssp             CTTCC-EEEETTHHHHTCTTCB--TCHHHHHHHHHHHHHCCCCCTTC-CCHHHHHHHHHHHHHS----CT--TCCEEEE-
T ss_pred             ECCCC-EEEEcccCHHhhhhcC--CCHHHHHHHHHHHhhcccccccc-ccHHHHHHHHHHHHhC----Cc--ccceeee-
Confidence            34443 7889877643222333  34566666655553311  1122 1222233444444332    11  1367877 


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHHhhCC------------CCeEEEecccCCC-------CCCC-
Q 017967          156 QGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDAR------------VPWSEYRYYDPKT-------VGLD-  215 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~~~~G------------~~~~~v~~~~~~~-------~~~d-  215 (363)
                       +.+|++|.+.+..+.+.....++|+...-+|.+........+            .....++......       ...+ 
T Consensus       106 -~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (431)
T d1zoda1         106 -LSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYL  184 (431)
T ss_dssp             -ESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHH
T ss_pred             -cccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhh
Confidence             999999999997766555555788888877766533322111            1122222110000       0111 


Q ss_pred             --HHHHHHHHHc-CCCCcEEEEEcCCC-CCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH
Q 017967          216 --FEGMIADIKA-APGGSFILLHGCAH-NPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (363)
Q Consensus       216 --~~~l~~~l~~-~~~~~~~~~i~~p~-NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  290 (363)
                        ++.++..+.. .++....++ ..|- --.|. ..+++-+++|.++|+++|+++|.||+..+|.-.+.   ......+ 
T Consensus       185 ~~~~~~~~~~~~~~~~~iAavi-~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~---~~~~~~~-  259 (431)
T d1zoda1         185 AELDYAFDLIDRQSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRD-  259 (431)
T ss_dssp             HHHHHHHHHHHHHCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-
T ss_pred             hhHHHHHHHHHHhcccccccee-eccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc---ccccccC-
Confidence              2333333322 223334444 4442 22344 45778899999999999999999999998743321   2222222 


Q ss_pred             hcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhh--ccccCCCchHHHHHHhc
Q 017967          291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA--RPMYSNPPPMLLGIQLS  354 (363)
Q Consensus       291 ~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~--~~~~~~~s~~~q~~~~~  354 (363)
                      .-.++++   .++|.++ .|+-+|.+  +.. ++    +........  ....++.++++..++..
T Consensus       260 gv~PDi~---~~gK~l~-gG~p~~av--~~~-~~----~~~~~~~~~~~~~~T~~g~pl~~aaa~a  314 (431)
T d1zoda1         260 GVTPDIL---TLSKTLG-AGLPLAAI--VTS-AA----IEERAHELGYLFYTTHVSDPLPAAVGLR  314 (431)
T ss_dssp             TCCCSEE---EECHHHH-TTSSCEEE--EEC-HH----HHHHHHHTTCCCCCTTTTCHHHHHHHHH
T ss_pred             CCCcchh---ccccccc-ccccccee--eee-ec----chhhhhcccccccCCCCCCcchHHHHHH
Confidence            3334444   3588888 78888888  555 44    333333221  12334555555554443

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.21  E-value=1.5e-05  Score=74.34  Aligned_cols=205  Identities=15%  Similarity=0.139  Sum_probs=124.5

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCC-----CCC-CcchHHHHHH---HHHHHhcCCCCcccCCcEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKE-----YLP-IEGLAAFNKV---TAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~-----Y~~-~~G~~~lr~a---ia~~l~~~~~~~~~~~~i~~  154 (363)
                      ..|+|-..++       ++.+.|++++...+......+     |.. ..-..++...   .|.-+++.   ..+. .-+-
T Consensus        32 ~~l~LIaSEN-------~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~---~~~~-~~an  100 (470)
T d1rv3a_          32 VGLELIASEN-------FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGL---DPQC-WGVN  100 (470)
T ss_dssp             SSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTC---CTTT-EEEE
T ss_pred             cCceEecCCC-------cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCC---Chhh-cccc
Confidence            6788876553       357788888766653322222     222 2222233222   22333332   1111 2233


Q ss_pred             EeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHHH----------hhCCCCeEEEecccCCCCCCCHHHHHHHHH
Q 017967          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIF----------NDARVPWSEYRYYDPKTVGLDFEGMIADIK  224 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~~----------~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~  224 (363)
                      +|..+|+.|...+  +.+++.|||+|+..+....++...-          .....+.+.++++ .+++.+|.+++++..+
T Consensus       101 Vqp~SGs~An~av--~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~-~~~~~IDyd~l~~~a~  177 (470)
T d1rv3a_         101 VQPYSGSPANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVN-PDTGYIDYDRLEENAR  177 (470)
T ss_dssp             CCCSSHHHHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBC-TTTCSBCHHHHHHHHH
T ss_pred             ccccCCccHHHHH--HHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEe-cccCcccHHHHHHHHH
Confidence            5778899997666  6778899999999987766654321          1112456777774 4567899999999887


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCC-CCcCCCCCCchhHHHHHHhcCCeEEEEEcCc
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQ-GFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  303 (363)
                      .  .++++++...-.+|-  .+   +++++.++|.+.|.+++.|-+.. ++.-++.-++  ++    +..  -++..|..
T Consensus       178 ~--~kPklIi~G~S~y~r--~~---d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~s--Pl----~~a--Dvvt~tTH  242 (470)
T d1rv3a_         178 L--FHPKLIIAGTSCYSR--NL---DYGRLRKIADENGAYLMADMAHISGLVVAGVVPS--PF----EHC--HVVTTTTH  242 (470)
T ss_dssp             H--HCCSEEEECCSSCCS--CC---CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC--GG----GTC--SEEEEESS
T ss_pred             h--hCcceEeechhhccc--cC---CHHHHHHHHhccCCeEEecchhhhhhccccccCC--hh----hee--eeeeeehh
Confidence            5  345577766656553  23   45566666899999999999963 3322221111  11    222  37788999


Q ss_pred             cccccccccceEEEEeeC
Q 017967          304 KNLGLYAERIGAMNVVCS  321 (363)
Q Consensus       304 K~~~l~G~RvG~i~~v~~  321 (363)
                      |+|  +|=|-|.|  .+.
T Consensus       243 Ktl--rGPrgGiI--~~~  256 (470)
T d1rv3a_         243 KTL--RGCRAGMI--FYR  256 (470)
T ss_dssp             GGG--CCCSCEEE--EEE
T ss_pred             hhc--cCCcceEE--EEc
Confidence            998  48898998  654

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.20  E-value=3.3e-05  Score=71.63  Aligned_cols=246  Identities=12%  Similarity=0.079  Sum_probs=124.6

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCCCc--chHHHHHHHHHHHhcCCCCcccCCcEEEEe
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIE--GLAAFNKVTAELLFGADNSVLKEQRVATVQ  156 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~--G~~~lr~aia~~l~~~~~~~~~~~~i~~~~  156 (363)
                      .+++ .+||+..|.-...-|+  -.|.+.+++.+.+.... +......  ....+.+.+.++ ..       .+.+.+  
T Consensus        36 ~dG~-~ylD~~~g~~~~~lGh--~~p~v~~Ai~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-------~~~v~~--  101 (404)
T d1z7da1          36 VNDK-RYYDFLSAYSSVNQGH--CHPNILNAMINQAKNLT-ICSRAFFSVPLGICERYLTNL-LG-------YDKVLM--  101 (404)
T ss_dssp             TTCC-EEEESSHHHHTTTTCB--TCHHHHHHHHHHHTTCS-CCCTTSEEHHHHHHHHHHHHH-HT-------CSEEEE--
T ss_pred             CCCC-EEEEccccHHHHhhhc--CcHHHHHHHHHHHHhCC-CcccccchHHHHHHHHhhhhc-cc-------cceeee--
Confidence            3443 7888877643222232  24677777766554311 1111111  112222223332 22       256766  


Q ss_pred             ccchhHHHHHHHHHHHHhC--------CCCEEEEcCCCCcchHHHHhhC-C---CCeEEEecccCCC---CCCCHHHHHH
Q 017967          157 GLSGTGSLRLAAALIERYF--------PGAKVLISSPTWGNHKNIFNDA-R---VPWSEYRYYDPKT---VGLDFEGMIA  221 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~--------~gd~Vlv~~P~y~~~~~~~~~~-G---~~~~~v~~~~~~~---~~~d~~~l~~  221 (363)
                      +.+|++|.+.+..+.....        ....++...-+|.+........ +   .+....|.. ...   ..-+.+.++.
T Consensus       102 ~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~  180 (404)
T d1z7da1         102 MNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFA-PQFSKVPYDDLEALEE  180 (404)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEECTTCHHHHHH
T ss_pred             eccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCC-ccccccccchHHHHHH
Confidence            8999999988865543221        1236777776665543322211 1   111111110 000   1124566666


Q ss_pred             HHHcCCCCcEEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEE
Q 017967          222 DIKAAPGGSFILLHGCA-HNPTGIDP-TPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVA  299 (363)
Q Consensus       222 ~l~~~~~~~~~~~i~~p-~NPTG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~  299 (363)
                      .+..  ++...+++ .| +.-.|... +++-+++|.++|+++|+++|.||+..+|.-.+.   .+....+ +-.++++  
T Consensus       181 ~~~~--~~iAavi~-EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~---~~~~e~~-gv~PDiv--  251 (404)
T d1z7da1         181 ELKD--PNVCAFIV-EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCVHHY-NVKPDVI--  251 (404)
T ss_dssp             HHTS--TTEEEEEE-CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSEE--
T ss_pred             HhcC--CCEEEEEE-EEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc---ccccccc-CCCCCEE--
Confidence            6652  33444443 44 44456654 455678999999999999999999988843221   2222222 3334444  


Q ss_pred             EcCcccccccc-ccceEEEEeeCChhHHHHHHHHHHhhhccccCCCchHHHHHHhcccc
Q 017967          300 QSYSKNLGLYA-ERIGAMNVVCSSSDLAARVKSQLKRLARPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       300 ~S~SK~~~l~G-~RvG~i~~v~~~~~~~~~~~~~l~~~~~~~~~~~s~~~q~~~~~~l~  357 (363)
                       .++|.++ .| +=+|.+  +.. ++    +.+.++.......++.++++..++...|+
T Consensus       252 -t~gK~l~-gG~~p~~~v--~~~-~~----i~~~~~~~~~~~T~~gnpl~~aaa~a~L~  301 (404)
T d1z7da1         252 -LLGKALS-GGHYPISAV--LAN-DD----IMLVIKPGEHGSTYGGNPLAASICVEALN  301 (404)
T ss_dssp             -EECGGGG-TTSSCCEEE--EEC-HH----HHTTCCTTCCCCTTTTCHHHHHHHHHHHH
T ss_pred             -EEccccc-CCCCCcccc--cch-HH----HHccCCCCCcCcCCCCCcchhhhhhhhhh
Confidence             7899998 45 678888  554 55    44444433333344556777776655544

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=0.00013  Score=68.10  Aligned_cols=255  Identities=10%  Similarity=0.012  Sum_probs=135.3

Q ss_pred             hcCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCC--CCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           78 KADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYL--PIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        78 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      ..+++ .+||+..|.-...-|+  -.+.+.+++.+.+.......+.  ......++.+.+.+...      ..-+++.+ 
T Consensus        39 D~dG~-~ylD~~~g~~~~~lGh--~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~v~f-  108 (429)
T d1s0aa_          39 LSDGR-RLVDGMSSWWAAIHGY--NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTP------QPLECVFL-  108 (429)
T ss_dssp             ETTSC-EEEESSTTTTTCTTCB--SCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSC------TTCCEEEE-
T ss_pred             ECCCC-EEEECcccHHHHhhcC--CcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhc------cCcceeee-
Confidence            33443 7889877743222332  3567777766655331101111  11122334444444321      12367777 


Q ss_pred             eccchhHHHHHHHHHHHHhC-----CCCEEEEcCCCCcchHH-HHhhCC-------------CCeEEEecccC-CC---C
Q 017967          156 QGLSGTGSLRLAAALIERYF-----PGAKVLISSPTWGNHKN-IFNDAR-------------VPWSEYRYYDP-KT---V  212 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~~-----~gd~Vlv~~P~y~~~~~-~~~~~G-------------~~~~~v~~~~~-~~---~  212 (363)
                       +.+|++|.+.+..+.+...     ...+|+...-+|.+... .....|             ......|.... ..   .
T Consensus       109 -~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (429)
T d1s0aa_         109 -ADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWD  187 (429)
T ss_dssp             -ESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCC
T ss_pred             -ccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccc
Confidence             8999999998866554431     33578888877755432 221111             11222222111 11   1


Q ss_pred             CCCHHHHHHHHHcCCCCcEEEEEcCC-CCCCCC-CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHH
Q 017967          213 GLDFEGMIADIKAAPGGSFILLHGCA-HNPTGI-DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFA  290 (363)
Q Consensus       213 ~~d~~~l~~~l~~~~~~~~~~~i~~p-~NPTG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  290 (363)
                      .-+++.+++.+...++....+++-.. ++--|. ..+++-+++|.++|+++|+++|.||+..+|.-.+.   ...... .
T Consensus       188 ~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~---~~~~~~-~  263 (429)
T d1s0aa_         188 ERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACEH-A  263 (429)
T ss_dssp             GGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGG-G
T ss_pred             hhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc---cccccc-c
Confidence            23455666655554444545544322 354455 46889999999999999999999999999843221   122211 1


Q ss_pred             hcCCeEEEEEcCccccccccccceEEEEeeCChhHHHHHHHHHHhhh-----ccccCCCchHHHHHHhcccc
Q 017967          291 TRGMELLVAQSYSKNLGLYAERIGAMNVVCSSSDLAARVKSQLKRLA-----RPMYSNPPPMLLGIQLSSMN  357 (363)
Q Consensus       291 ~~~~~vi~~~S~SK~~~l~G~RvG~i~~v~~~~~~~~~~~~~l~~~~-----~~~~~~~s~~~q~~~~~~l~  357 (363)
                      +-.++++   .++|.++-.++-+|.+  ++. ++    +.+.+....     ....++.++++-.++...|+
T Consensus       264 ~v~PDi~---~~gK~l~gG~~p~~av--~~~-~~----i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~  325 (429)
T d1s0aa_         264 EIAPDIL---CLGKALTGGTMTLSAT--LTT-RE----VAETISNGEAGCFMHGPTFMGNPLACAAANASLA  325 (429)
T ss_dssp             TCCCSEE---EECGGGGTSSSCCEEE--EEC-HH----HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred             eeccccc---ccccccccccccccch--hhH-HH----HHhccCCCCCcceeecCCCCCCcccchhhhcccc
Confidence            2233444   3578887444788988  554 66    444443321     12233455666665555444

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.15  E-value=4.1e-06  Score=78.10  Aligned_cols=206  Identities=15%  Similarity=0.158  Sum_probs=111.8

Q ss_pred             CcEEeeccccCCCCCCccccHHHHHHHHHHHccCCCCCCCC------C---cchHHHHHHHHHHHhcCCCCcccCCcEEE
Q 017967           84 KKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLP------I---EGLAAFNKVTAELLFGADNSVLKEQRVAT  154 (363)
Q Consensus        84 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~------~---~G~~~lr~aia~~l~~~~~~~~~~~~i~~  154 (363)
                      ..|+|-..++       ++.+.|++++...+......+|+.      .   .-++.+....|.-+++.   .+..+.| =
T Consensus        28 ~~l~LiaSEN-------~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~---~~a~w~v-N   96 (463)
T d2a7va1          28 RGLELIASEN-------FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL---DPAQWGV-N   96 (463)
T ss_dssp             HSEECCTTCC-------CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTC---CTTTEEE-E
T ss_pred             cCeeEeccCC-------cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCC---CchhccC-C
Confidence            5688876553       357788888766553322233321      1   11223333334334443   2222222 2


Q ss_pred             EeccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH--------HhhCCC--CeEEEecccCCCCCCCHHHHHHHHH
Q 017967          155 VQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI--------FNDARV--PWSEYRYYDPKTVGLDFEGMIADIK  224 (363)
Q Consensus       155 ~~t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~--------~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~l~  224 (363)
                      +|..+|+.|...+  +.+++.|||+|+..++...++...        ....|.  +...|.++ ++++.+|.+++++..+
T Consensus        97 Vqp~SGs~An~av--~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d-~~~~~IDyd~~~~~a~  173 (463)
T d2a7va1          97 VQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN-PKTGLIDYNQLALTAR  173 (463)
T ss_dssp             CCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCBC-TTTCSBCHHHHHHHHH
T ss_pred             ccccccHHHHHHH--HHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeecc-CCCCcCcHHHHHHHHh
Confidence            4568888886665  677889999999999887776522        122333  34445453 3567899999999887


Q ss_pred             cCCCCcEEEEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEecCC-CCCcCCCCCCchhHHHHHHhcCCeEEEEEcCc
Q 017967          225 AAPGGSFILLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAY-QGFASGSLDNDASSVRLFATRGMELLVAQSYS  303 (363)
Q Consensus       225 ~~~~~~~~~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  303 (363)
                      +  .++++++...-.+|--  +   +++++.++|.+.|.+++.|-+. .++.-++.-++  ++    +..  -++..|..
T Consensus       174 ~--~kPklIi~G~S~y~r~--~---d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~s--P~----~~a--Dvvt~tTH  238 (463)
T d2a7va1         174 L--FRPRLIIAGTSAYARL--I---DYARMREVCDEVKAHLLADMAHISGLVAAKVIPS--PF----KHA--DIVTTTTH  238 (463)
T ss_dssp             H--HCCSEEEECCSSCCSC--C---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCC--GG----GTC--SEEEEESS
T ss_pred             h--cCCceEEecccccccc--c---CHHHHHHHhhcccceEEechhhhhHHhhhhhhcC--hh----hhh--hhhhchhh
Confidence            6  3455777666566543  3   4556666688999999999995 23332222111  11    222  36677889


Q ss_pred             cccccccccceEEEEeeCC
Q 017967          304 KNLGLYAERIGAMNVVCSS  322 (363)
Q Consensus       304 K~~~l~G~RvG~i~~v~~~  322 (363)
                      |+|  +|=|-|.|  .+.+
T Consensus       239 KTl--rGPrgGiI--l~~~  253 (463)
T d2a7va1         239 KTL--RGARSGLI--FYRK  253 (463)
T ss_dssp             GGG--CSCSCEEE--EEEC
T ss_pred             hhh--cCCCceEE--EEcc
Confidence            998  59998888  6543

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=97.97  E-value=1.6e-06  Score=79.13  Aligned_cols=181  Identities=10%  Similarity=-0.084  Sum_probs=105.4

Q ss_pred             CCccccHHHHHHHHHHHccCCC--C------CCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchh-HHHHH
Q 017967           98 LQPYVLDVVKKAENLMLERGEN--K------EYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGT-GSLRL  166 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~--~------~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt-~al~l  166 (363)
                      |+..+++.|.+++.+.+..-.+  .      +..+  ..-..+.|+.+++++...     ++.+|++  +.|++ ++.+.
T Consensus        10 GP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~-----~~~~i~~--~~gs~t~~~ea   82 (361)
T d2c0ra1          10 GPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-----TGYKVLF--IQGGASTQFAM   82 (361)
T ss_dssp             SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-----SSEEEEE--ESSHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-----CCCEEEE--ECCCchHHHHH
Confidence            5677889999998775421000  0      0011  112345566666665332     1235655  55554 44444


Q ss_pred             HHHHHHHhCCCCEEEEcCCCC--cchHHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCC
Q 017967          167 AAALIERYFPGAKVLISSPTW--GNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGI  244 (363)
Q Consensus       167 ~~~l~~~~~~gd~Vlv~~P~y--~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~  244 (363)
                      +  +..+..+|+++++..-..  ..+..+++..|..+..+...  .....+++.+++.+..   .+.+.+    +|.||.
T Consensus        83 ~--~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~v----~~~tg~  151 (361)
T d2c0ra1          83 I--PMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSE--ASNYMTLPKLQEIQLQ---DNAAYL----HLTSNE  151 (361)
T ss_dssp             H--HHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECG--GGTTCSCCCGGGCCCC---TTEEEE----EEESEE
T ss_pred             H--HhccccCCCceEEEeechhhhhhhhhhhhcCceeeeeccc--cccccchhhhhhhccc---CcceEE----EEeccc
Confidence            3  445567888887665332  22345567889888888763  3445677777765542   333333    578898


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccc
Q 017967          245 DPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (363)
Q Consensus       245 ~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~  311 (363)
                      ..+..+   |.++|+++|+++++|.+ +.+...+.  +.       +. .+ +.+.|.+|.++.+|.
T Consensus       152 ~~~~~~---i~~~~~~~~al~~vDav-ss~g~~~i--d~-------~~-~d-i~~~s~~k~~~~~~~  203 (361)
T d2c0ra1         152 TIEGAQ---FKAFPDTGSVPLIGDMS-SDILSRPF--DL-------NQ-FG-LVYAGAQKNLGPSGV  203 (361)
T ss_dssp             TTTTEE---CSSCCCCTTSCEEEECT-TTTTSSCC--CG-------GG-CS-EEEEETTTTTCCSSC
T ss_pred             ceecce---EEEeeccCCceEEEEee-cccccccc--cc-------cc-ce-eEEEecccccccccC
Confidence            887665   45669999999999999 44332211  11       11 23 335577999998875

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=97.66  E-value=2.1e-05  Score=71.16  Aligned_cols=182  Identities=9%  Similarity=-0.113  Sum_probs=100.3

Q ss_pred             CCccccHHHHHHHHHHHccCCC-----C---CCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHH
Q 017967           98 LQPYVLDVVKKAENLMLERGEN-----K---EYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA  167 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~-----~---~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~  167 (363)
                      |+..+++.|.+++.+....-..     .   +..+  ..-..+.|+.+++++....     +..|++  +.|++++...+
T Consensus        10 GP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~-----~~~i~~--~~gt~~~~~~~   82 (360)
T d1w23a_          10 GPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPN-----DYQILF--LQGGASLQFTM   82 (360)
T ss_dssp             SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT-----TEEEEE--ESSHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCC-----CCEEEE--eCCcHHHHHHH
Confidence            4566788999988764411000     0   0001  1123567888888875431     234555  66665555444


Q ss_pred             HHHHHHhCCCCEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCC
Q 017967          168 AALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID  245 (363)
Q Consensus       168 ~~l~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~  245 (363)
                      + ......+++.|++....+...  ...++..+..++.+....  .....++.+++...   ...+..+    .|-||..
T Consensus        83 ~-~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~----~~~tg~~  152 (360)
T d1w23a_          83 L-PMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKA--NSYQSIPDFSEFQL---NENDAYL----HITSNNT  152 (360)
T ss_dssp             H-HHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGG--GTSCSCCCGGGCCC---CTTEEEE----EEESEET
T ss_pred             H-HhhhcccCcccceeeccchhhhhHHHHHHhhhcceeecccc--ccccchhhhhhccc---cccccee----EecCCcc
Confidence            2 344456788888876654332  334456666665555422  22233344443322   2233333    4678888


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccc
Q 017967          246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (363)
Q Consensus       246 ~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~  311 (363)
                      .+.++   |.++|+++|+++|+|.+ +.+...+.+  .       +.  --+.+.+++|..+++|-
T Consensus       153 ~~~~~---i~~~~~~~g~l~ivDav-qs~g~~~id--~-------~~--~~vd~~~~~~~k~~~~~  203 (360)
T d1w23a_         153 IYGTQ---YQNFPEINHAPLIADMS-SDILSRPLK--V-------NQ--FGMIYAGAQKNLGPSGV  203 (360)
T ss_dssp             TTTEE---CSSCCCCCSSCEEEECT-TTTTSSCCC--G-------GG--CSEEEEETTTTTSCTTC
T ss_pred             cccee---eeeccccceeeEEeecc-ccccccccc--c-------cc--ccceEEeeccccccCCc
Confidence            77654   55669999999999999 444332211  1       11  12455677888876664

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=2.5e-05  Score=70.31  Aligned_cols=184  Identities=11%  Similarity=-0.088  Sum_probs=103.1

Q ss_pred             CCccccHHHHHHHHHHHccCCCC--------CCCC--CcchHHHHHHHHHHHhcCCCCcccCCcEEEEeccchhHHHHHH
Q 017967           98 LQPYVLDVVKKAENLMLERGENK--------EYLP--IEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLA  167 (363)
Q Consensus        98 ~~~~~~~~v~~a~~~~~~~~~~~--------~Y~~--~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~~t~ggt~al~l~  167 (363)
                      |+..+++.|.+++.+.+..-...        +..+  ..-..+.|+.+++++....     +..|++  +.|++.+...+
T Consensus         8 GP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~-----~~~v~~--~~gs~t~~~~a   80 (360)
T d1bjna_           8 GPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPS-----NYKVLF--CHGGGRGQFAA   80 (360)
T ss_dssp             SSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT-----TEEEEE--ESSHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCC-----CCEEEE--ECCchHHHHhh
Confidence            55778899999987754210000        0111  1124677888888875531     235655  66666665544


Q ss_pred             HHHHHHhCCCCEEEEcCCCCcch--HHHHhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEEEEEcCCCCCCCCC
Q 017967          168 AALIERYFPGAKVLISSPTWGNH--KNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGID  245 (363)
Q Consensus       168 ~~l~~~~~~gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~i~~p~NPTG~~  245 (363)
                      . ......+++.+++..-.+...  ....+..|..++.+...  .+...+.+.+++.+..   +++++++...||-||..
T Consensus        81 ~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~v~v~~~~~~t~~~  154 (360)
T d1bjna_          81 V-PLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKV--TVDGLRAVKPMREWQL---SDNAAYMHYCPNETIDG  154 (360)
T ss_dssp             H-HHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEE--EETTEEEECCGGGCCC---CSSCSCEEECSEETTTT
T ss_pred             h-hhcccccccccceecccchhhhhHHHHhhcCccceeeccc--cCCCcchhhhhhhhcc---CCceeEEEecccccccC
Confidence            2 344455778888877666443  33445666666555542  2233444455444432   23344444567888887


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEecCCCCCcCCCCCCchhHHHHHHhcCCeEEEEEcCccccccccc
Q 017967          246 PTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDNDASSVRLFATRGMELLVAQSYSKNLGLYAE  311 (363)
Q Consensus       246 ~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~l~G~  311 (363)
                      ....++     .++.+++.+++|.+.. +...+.  +.         ..-.+.+.|.+|.++.++-
T Consensus       155 ~~~~~i-----~~~~~~~~v~vDa~~~-~~~~~v--d~---------~~~dv~~~ss~k~~~~~~~  203 (360)
T d1bjna_         155 IAIDET-----PDFGADVVVAADFSST-ILSRPI--DV---------SRYGVIYAGAQKNIGPAGL  203 (360)
T ss_dssp             EECCCC-----CCCCTTCCEEEECTTT-TTSSCC--CG---------GGCSEEEEETTTTTSSTTC
T ss_pred             ccccce-----ecccccceeeeeeecc-ccceee--ee---------ccceeEEEEcccccccCCC
Confidence            765432     2456789999998743 332221  11         1223566777888886654

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.40  E-value=0.00084  Score=62.93  Aligned_cols=190  Identities=13%  Similarity=0.042  Sum_probs=99.1

Q ss_pred             cCCCCCcEEeeccccCCCCCCccccHHHHHHHHHHHccC---CCCCCCCCcchHHHHHHHHHHHhcCCCCcccCCcEEEE
Q 017967           79 ADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERG---ENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATV  155 (363)
Q Consensus        79 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~i~~~  155 (363)
                      .+++ .++|+..|.-...-|+  -.+.|.+++.+.....   ....+ .......+.+.+++.+......  .-+++.+ 
T Consensus        50 ~dG~-~ylD~~~g~~~~~lGh--~~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~~a~~lae~l~~~~~~--~~~~v~f-  122 (461)
T d1ohwa_          50 VDGN-RMLDLYSQISSIPIGY--SHPALVKLVQQPQNVSTFINRPAL-GILPPENFVEKLRESLLSVAPK--GMSQLIT-  122 (461)
T ss_dssp             TTSC-EEEESSHHHHTCSSCB--TCHHHHHHHHCGGGHHHHHCCCCT-TTSCBTTHHHHHHHTGGGGCCT--TCCEEEE-
T ss_pred             CCCC-EEEEcccCHHHHhhcC--CcHHHHHHHHHHHhhhhhcccccc-cccchHHHHHHHHHHHHhhhcc--Ccceeee-
Confidence            3443 6889876642222233  2345666654433110   00111 1111223456666665432211  2367877 


Q ss_pred             eccchhHHHHHHHHHHHHh--------------------------CCCCEEEEcCCCCcchHH-HHhhCCCC--------
Q 017967          156 QGLSGTGSLRLAAALIERY--------------------------FPGAKVLISSPTWGNHKN-IFNDARVP--------  200 (363)
Q Consensus       156 ~t~ggt~al~l~~~l~~~~--------------------------~~gd~Vlv~~P~y~~~~~-~~~~~G~~--------  200 (363)
                       +.+|++|.+.+..+...+                          .+..+|+...-+|.+... .+...|-+        
T Consensus       123 -~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~  201 (461)
T d1ohwa_         123 -MACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIP  201 (461)
T ss_dssp             -ESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCC
T ss_pred             -ecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCccccccccc
Confidence             999999999986554322                          123468888888866422 22222211        


Q ss_pred             ---eEEEecccCC-C-----------CCCCHHHHHHHHH---cCCCCcEEEEEcCCCCCCC-CCCCHHHHHHHHHHHHhc
Q 017967          201 ---WSEYRYYDPK-T-----------VGLDFEGMIADIK---AAPGGSFILLHGCAHNPTG-IDPTPEQWEKIADVIQEK  261 (363)
Q Consensus       201 ---~~~v~~~~~~-~-----------~~~d~~~l~~~l~---~~~~~~~~~~i~~p~NPTG-~~~s~~~~~~i~~~~~~~  261 (363)
                         ....+..... .           ...+.+.+++.+.   ..++....+++-.-+.-.| ...+++-+++|.++|+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~  281 (461)
T d1ohwa_         202 SFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH  281 (461)
T ss_dssp             CCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT
T ss_pred             ccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhh
Confidence               1111110000 0           0012344444432   2344444555444344445 446788899999999999


Q ss_pred             CCeEEEecCCCCCcC
Q 017967          262 NHIPFFDVAYQGFAS  276 (363)
Q Consensus       262 ~~~ii~De~y~~~~~  276 (363)
                      |+++|.||+..+|.-
T Consensus       282 gillI~DEV~tG~gR  296 (461)
T d1ohwa_         282 GCAFLVDEVQTGGGS  296 (461)
T ss_dssp             TCEEEEECTTTCSST
T ss_pred             Ccceecccccccccc
Confidence            999999999998853

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=94.16  E-value=0.47  Score=43.11  Aligned_cols=98  Identities=8%  Similarity=-0.095  Sum_probs=66.1

Q ss_pred             ccchhHHHHHHHHHHHHhCCCCEEEEcCCCCcchHHH----HhhCCCCeEEEecccCCCCCCCHHHHHHHHHcCCCCcEE
Q 017967          157 GLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNI----FNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFI  232 (363)
Q Consensus       157 t~ggt~al~l~~~l~~~~~~gd~Vlv~~P~y~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  232 (363)
                      -.|+++..+-+. +.......+++++..-.++.+...    ++..|++++.++.++   ++.+.+++       .+.+..
T Consensus       131 ~~ga~a~~~~~~-~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~---~~~~~~~~-------~~~~Aa  199 (437)
T d1wyua1         131 YDGATALAEGVL-LALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEG---GRTPLPEV-------GEEVGA  199 (437)
T ss_dssp             SSHHHHHHHHHH-HHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBT---TBCCCCCC-------CTTEEE
T ss_pred             hHHHHHHHHHHH-HHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeeccc---ccchhhhh-------ccceeE
Confidence            556666665553 223334668899999888777665    347899999998743   23333322       245677


Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHhcCCeEEEec
Q 017967          233 LLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDV  269 (363)
Q Consensus       233 ~~i~~p~NPTG~~~s~~~~~~i~~~~~~~~~~ii~De  269 (363)
                      +++.+|| =.|..-   ++++|.+++++.|.+++.|-
T Consensus       200 vmi~~Pn-t~G~~e---d~~~i~~~~h~~G~l~~~~a  232 (437)
T d1wyua1         200 VVVQNPN-FLGALE---DLGPFAEAAHGAGALFVAVA  232 (437)
T ss_dssp             EEEESSC-TTSBCC---CHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEcccc-cccccc---chHHHHHHhhhccceEEeee
Confidence            7888884 468763   57888889999998776664