Citrus Sinensis ID: 017971

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MRGMSKGRIWILLCLLLLTGRGMMLLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQFS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHcccccccEEEEEEccccccccccccHHHHHHHHHHHcccccEEcccHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHcccccEEEEEccccHHHHHccccccccEEEEcccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHccccccccccEEEEEEcccccccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHcccccccEEEEEccccEEcccccccHHHHHHHHHHHcccccEEcccHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHcccccEEEccccHHHHHHccccccccEEEEEccccccEcccccccHHHHHHHHHHccccEEEEccHcHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEccHccHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MRGMSKGRIWILLCLLLLTGRGmmlltgrglsseeetkfKIDGKvieldesnfdsaissfDYILvdfyapwcghckrlapqLDEAAPILAklkepiviakvdadkysrlaskqeidafptlkifmhgipteyygprKAELLVRYLKKfvapdvsilnsdaevsdfvenagtffplfigfgldESVMSNLALKYKKKAWFAVAkdfsedtmvlydfdkvpalvalqpsynehnifygpfdEEFLEEFIKqnflplsvpinqdtlnllkddKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEankksklpkmvvwdgneNYLTVSINVLKTRVCFFMLTLLQFS
Flexible Loop (DISEMBL)
MRGMSKGRIWILLCLLLLTGRGMMLLtgrglsseeetkFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASkqeidafptlkifMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAivedeteeksqKLVTTLKAAASANRELVFCYVGIKQFADFADTFEAnkksklpkmvvwdgNENYLTVSINVLKTRVCFFMLTLLQFS
Low Complexity Region (SEG)
MRGMSKGRIWIllclllltgrgmmlltgrglSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQFS
Disordered region (IsUnstruct)
*******RIWILLCLLLLTGRGMMLLTGRG******************************DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAI***************LKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ**
Disordered Region (DISOPRED)
******G*IWILLCLLLLTGRGMMLLTG****************VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQF*
Disordered Region (DISEMBL)
MRGMSKGRIWILLCLLLLTGRGMMLLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQFS
Disordered Region (DISPRO)
*RGMSKGRIWILLCLLLLTGRGMMLLTGRGLSSEEET**KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTL****
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGMSKGRIWILLCLLLLTGRGMMLLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q94F09	440	Protein disulfide-isomera	yes	no	0.845	0.697	0.713	1e-132
Q0JD42	423	Protein disulfide isomera	yes	no	0.842	0.723	0.643	1e-120
Q0E0I1	425	Protein disulfide isomera	no	no	0.829	0.708	0.605	1e-108
Q54EN4	513	Protein disulfide-isomera	yes	no	0.710	0.502	0.343	8e-31
P29828	512	Protein disulfide-isomera	N/A	no	0.595	0.421	0.350	6e-28
Q43116	498	Protein disulfide-isomera	N/A	no	0.674	0.491	0.310	8e-28
Q9XI01	501	Protein disulfide isomera	no	no	0.892	0.646	0.299	2e-27
Q9SRG3	508	Protein disulfide isomera	no	no	0.834	0.596	0.302	1e-26
P54399	496	Protein disulfide-isomera	yes	no	0.641	0.469	0.320	1e-25
P80284	513	Protein disulfide-isomera	N/A	no	0.294	0.208	0.549	2e-25

>sp|Q94F09|PDI52_ARATH Protein disulfide-isomerase 5-2 OS=Arabidopsis thaliana GN=PDIL5-2 PE=2 SV=1

 Score =  471 bits (1211), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 219/307 (71%), Positives = 263/307 (85%)

Query: 38  KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV 97
           +F +DG V+EL +SNFDSAIS+FD I VDFYAPWCGHCKRL P+LD AAPILAKLK+PIV
Sbjct: 27  QFTLDGTVLELTDSNFDSAISTFDCIFVDFYAPWCGHCKRLNPELDAAAPILAKLKQPIV 86

Query: 98  IAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILN 157
           IAK++ADKYSRLA K EIDAFPTL ++ HG+P EYYGPRKA+LLVRYLKKFVAPDV++L 
Sbjct: 87  IAKLNADKYSRLARKIEIDAFPTLMLYNHGVPMEYYGPRKADLLVRYLKKFVAPDVAVLE 146

Query: 158 SDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDK 217
           SD+ V +FVE+AGTFFP+FIGFGL+ES++S L  KYKKKAWFAV+K+ SEDTMV YDFDK
Sbjct: 147 SDSTVKEFVEDAGTFFPVFIGFGLNESIISGLGRKYKKKAWFAVSKEVSEDTMVSYDFDK 206

Query: 218 VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAI 277
            PALVA  P+YNEH++FYGPF++ FLEEF+KQ+FLPL +PIN DTL LLKDD+RKIVL I
Sbjct: 207 APALVANHPTYNEHSVFYGPFEDGFLEEFVKQSFLPLILPINHDTLKLLKDDERKIVLTI 266

Query: 278 VEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337
           VEDET E  +KL   L+AAA ANR+LVF YVG+KQF +F D+F  +KK+ LPK+VVWDG+
Sbjct: 267 VEDETHESLEKLYKALRAAAHANRDLVFGYVGVKQFEEFVDSFHVDKKTNLPKIVVWDGD 326

Query: 338 ENYLTVS 344
           E Y  V+
Sbjct: 327 EEYDQVT 333

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0JD42|PDI52_ORYSJ Protein disulfide isomerase-like 5-2 OS=Oryza sativa subsp. japonica GN=PDIL5-2 PE=2 SV=2

 Score =  433 bits (1113), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 197/306 (64%), Positives = 253/306 (82%)

Query: 38  KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV 97
           +F  DG+VIELDES+F++A+ + DY+ VDFYAPWCGHCKRLAP+LDEAAP+LA L EPI+
Sbjct: 37  EFPRDGRVIELDESSFEAALGAIDYLFVDFYAPWCGHCKRLAPELDEAAPVLAGLSEPII 96

Query: 98  IAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILN 157
           +AKV+ADKY +L SK  +D FPTL +F+HG+P EY G RKA+LLVR L KFVAPDVSIL 
Sbjct: 97  VAKVNADKYRKLGSKYGVDGFPTLMLFIHGVPIEYTGSRKADLLVRNLNKFVAPDVSILE 156

Query: 158 SDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDK 217
           SD+ +  FVENAGT FP+FIGFG++ES+++    KYKK+AWFAVAKDFSED MV YDFDK
Sbjct: 157 SDSAIKSFVENAGTSFPMFIGFGVNESLIAGYGGKYKKRAWFAVAKDFSEDFMVTYDFDK 216

Query: 218 VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAI 277
           VPALV+L P Y E ++FYGPF+  FLE+FI+Q+ LPL+VPIN +TL +L DD RK+VLAI
Sbjct: 217 VPALVSLHPKYKEQSVFYGPFEGSFLEDFIRQSLLPLTVPINTETLKMLDDDDRKVVLAI 276

Query: 278 VEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337
           +ED+++E S +LV  L++AA+ANR+LVF YVGIKQ+ +F +TF+ +K S+LPK++VWD N
Sbjct: 277 LEDDSDETSSQLVKVLRSAANANRDLVFGYVGIKQWDEFVETFDISKSSQLPKLIVWDRN 336

Query: 338 ENYLTV 343
           E Y  V
Sbjct: 337 EEYEVV 342

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0E0I1|PDI53_ORYSJ Protein disulfide isomerase-like 5-3 OS=Oryza sativa subsp. japonica GN=PDIL5-3 PE=2 SV=1

 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/304 (60%), Positives = 237/304 (77%), Gaps = 3/304 (0%)

Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           DG+V+ELD+ NFD+A+ +   + VDFYAPWCGHCKRLAPQLDEAAP+LA L  PIV+AKV
Sbjct: 45  DGRVLELDDGNFDAAVRAAGLLFVDFYAPWCGHCKRLAPQLDEAAPVLAGLSTPIVVAKV 104

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAE 161
           +ADKY +L SK  +D FPTL +F HG PTEY G RKA+LLV  LKK VAPDVS+L SD+ 
Sbjct: 105 NADKYKKLGSKYGVDGFPTLMLFDHGTPTEYTGSRKADLLVENLKKLVAPDVSVLESDSA 164

Query: 162 VSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPAL 221
           +  FVE+AG  FPLF+GFG+DES++     KYK +AWF+VAKDFSED MV YDFDKVPAL
Sbjct: 165 IKSFVEDAGMGFPLFLGFGVDESLIVEYGAKYKNRAWFSVAKDFSEDMMVFYDFDKVPAL 224

Query: 222 VALQPSYNEHNIFYGPFDE-EFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVE- 279
           V++ P Y E +IFYGPFD+  FLE+FI+ + LPL VP+N++T+ +L DD RK+VL I++ 
Sbjct: 225 VSVNPKYREQSIFYGPFDDGAFLEDFIRNSLLPLVVPMNRETVKMLNDDGRKVVLMILQD 284

Query: 280 DETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN 339
           DE++E S +L+  L++AASANR+LVF YVG+ Q+ +F +TF+  K S+LP M+VWD  E 
Sbjct: 285 DESDENSPRLIKVLRSAASANRDLVFGYVGVNQWEEFTETFDV-KSSELPTMIVWDKKEE 343

Query: 340 YLTV 343
           Y  V
Sbjct: 344 YEIV 347

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q54EN4|PDI2_DICDI Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2 PE=3 SV=1

 Score =  134 bits (338), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 145/271 (53%), Gaps = 13/271 (4%)

Query: 48  LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107
           LD  NF +++S  D  LV FYAPWCGHCK L P  +EAA  L+  K+ I IAKVD  ++ 
Sbjct: 46  LDSDNFHNSVSEHDVTLVMFYAPWCGHCKTLKPLYEEAAKQLSANKK-IAIAKVDCTQHE 104

Query: 108 RLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVE 167
           +L  + ++  +PTL +F +G    Y G R  + +V+ L++ + P +S L S+ ++ +F +
Sbjct: 105 QLCKQNKVQGYPTLVVFKNGKAEPYEGDRTTKSIVQTLEEELKPTISTLESNEDIEEFKK 164

Query: 168 NAGTFFPLFIGFGLDE--SVMSNLALKYKKKAWFAVA--KDFSEDTMVLYDFDKVPALVA 223
                   F     D+   + S LA   KK A FAV   KDFS++ +     +  P +V 
Sbjct: 165 QHPISVVGFFDNDHDDRFKLFSELAGNNKKSAKFAVVIDKDFSKEHV-----ESTPNVVL 219

Query: 224 LQPSYNEHNIFY-GPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDET 282
            + S++E  + + G FD E L +FIK N +PL   IN++T    +     +    + D T
Sbjct: 220 FR-SFDEPTVAHKGEFDSESLIKFIKGNSVPLLGEINRNTYKKYESIAVPLAYLFI-DST 277

Query: 283 EEKSQKLVTTLKAAASANRELVFCYVGIKQF 313
           ++ +Q L    K A S     VFC+V +K+F
Sbjct: 278 QDNTQVLEDVKKIATSQKGNAVFCWVDMKKF 308

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P29828|PDI_MEDSA Protein disulfide-isomerase OS=Medicago sativa GN=PDI PE=2 SV=1

 Score =  125 bits (314), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 12/228 (5%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           V+ LD +NF   +   D+I+V+FYAPWCGHCK+LAP+ ++AA IL+  + P+V+AKVDA+
Sbjct: 35  VLTLDNTNFHDTVKKHDFIVVEFYAPWCGHCKKLAPEYEKAASILSTHEPPVVLAKVDAN 94

Query: 105 KYSR--LASKQEIDAFPTLKIFMHGIPT--EYYGPRKAELLVRYLKKFVAPDVSILNSDA 160
           +     LAS+ ++  FPT+KIF +G     EY GPR+AE +V YLKK   P  + + S  
Sbjct: 95  EEHNKDLASENDVKGFPTIKIFRNGGKNIQEYKGPREAEGIVEYLKKQSGPASTEIKSAD 154

Query: 161 EVSDFVENAGT----FFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFD 216
           + + FV +        FP F G    E   + +AL  K ++ +  A   +   +   D  
Sbjct: 155 DATAFVGDNKVVIVGVFPKFSG----EEYDNFIALAEKLRSDYDFAHTLNAKHLPKGDSS 210

Query: 217 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLN 264
               +V L   ++E  +    F+ E LE+FI+++  P+    N +  N
Sbjct: 211 VSGPVVRLFKPFDELFVDSKDFNVEALEKFIEESSTPIVTVFNNEPSN 258

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Medicago sativa (taxid: 3879)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q43116|PDI_RICCO Protein disulfide-isomerase OS=Ricinus communis PE=2 SV=1

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 139/267 (52%), Gaps = 22/267 (8%)

Query: 6   KGRIWILLCLLLLTGRGMMLLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILV 65
           +G IW   C+ +L+   ++ +      SEEE        V+ LD +NF   IS  D+I+V
Sbjct: 5   RGSIW--YCIFVLS---LIAVAISAAESEEEQ-----SSVLTLDSTNFTDTISKHDFIVV 54

Query: 66  DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS--RLASKQEIDAFPTLKI 123
           +FYAPWCGHCK+L P+ ++AA IL     P+V+AKVDA++ +   LA++ +I  FPTLKI
Sbjct: 55  EFYAPWCGHCKKLRPEYEKAASILKSHDIPVVLAKVDANEEANKELATQYDIKGFPTLKI 114

Query: 124 FMHGIPT--EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTF----FPLFI 177
             +G  +  EY GPR+A+ +  YLKK   P    + S    + F+ +   F    FP F 
Sbjct: 115 LRNGGKSIQEYKGPREADGIAEYLKKQSGPASVEIKSTEAANTFIGDKKIFIVGVFPKFS 174

Query: 178 GFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP 237
           G    E   + +++  K ++ +          +   +      +V L   ++E  + +  
Sbjct: 175 G----EEYENYMSVADKLRSDYEFGHTLDAKHLPQGESSVTGPVVRLFKPFDELFVDFKD 230

Query: 238 FDEEFLEEFIKQNFLPLSVPINQDTLN 264
           F+ + LE+F++++ +P+    N D  N
Sbjct: 231 FNVDALEKFVEESSMPVVTVFNSDPSN 257

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Ricinus communis (taxid: 3988)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9XI01|PDI11_ARATH Protein disulfide isomerase-like 1-1 OS=Arabidopsis thaliana GN=PDIL1-1 PE=1 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 183/357 (51%), Gaps = 33/357 (9%)

Query: 8   RIWILLCLLLLTGRGMMLLTGRGLSSEE-ETKFKIDGKVIELDESNFDSAISSFDYILVD 66
           R + L  +L+L+      L    + SEE ETK      V+ LD +NF   I+  D+I+V+
Sbjct: 4   RGFTLFSILVLS------LCASSIRSEETETK----EFVLTLDHTNFTDTINKHDFIVVE 53

Query: 67  FYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS--RLASKQEIDAFPTLKIF 124
           FYAPWCGHCK+LAP+ ++AA  L+    P+V+AK+DA + +    A++ E+  FPT+KIF
Sbjct: 54  FYAPWCGHCKQLAPEYEKAASALSSNVPPVVLAKIDASEETNREFATQYEVQGFPTIKIF 113

Query: 125 MHGIPT--EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGT----FFPLFIG 178
            +G     EY GPR+AE +V YLKK   P  + + S  + S+ V +        FP   G
Sbjct: 114 RNGGKAVQEYNGPREAEGIVTYLKKQSGPASAEIKSADDASEVVSDKKVVVVGIFPKLSG 173

Query: 179 FGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPF 238
              D S M+ +A K + +  FA   D     +   +      +V L   ++E  +    F
Sbjct: 174 SEFD-SFMA-IAEKLRSELDFAHTSD--AKLLPRGESSVTGPVVRLFKPFDEQFVDSKDF 229

Query: 239 DEEFLEEFIKQNFLPLSVPINQDTLN------LLKDDKRKIVLAIVEDETEEKSQKLVTT 292
           D E LE+F+K++ +PL    ++D  N        +    K +L I  + T E ++ L + 
Sbjct: 230 DGEALEKFVKESSIPLITVFDKDPNNHPYVIKFFESTNTKAMLFI--NFTGEGAESLKSK 287

Query: 293 LKAAASANRELVFCY-VGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVSINV 347
            +  A++N+     + +G  + +  A  +   ++S++P +++   ++  YL  ++ V
Sbjct: 288 YREVATSNKGQGLSFLLGDAENSQGAFQYFGLEESQVPLIIIQTADDKKYLKTNVEV 344

Protein disulfide isomerase that associates with RD21A protease for trafficking from the ER through the Golgi to lytic and protein storage vacuoles of endothelial cells in developing seeds. Regulates the timing of programmed cell death (PCD) of the endothelial cells by chaperoning and inhibiting cysteine proteases during their trafficking to vacuoles.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9SRG3|PDI12_ARATH Protein disulfide isomerase-like 1-2 OS=Arabidopsis thaliana GN=PDIL1-2 PE=1 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 172/331 (51%), Gaps = 28/331 (8%)

Query: 33  SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL 92
           SEE  +F     V+ LD SNF   IS  D+I+V+FYAPWCGHC++LAP+ ++AA  L+  
Sbjct: 24  SEETKEF-----VLTLDHSNFTETISKHDFIVVEFYAPWCGHCQKLAPEYEKAASELSSH 78

Query: 93  KEPIVIAKVDADKYS--RLASKQEIDAFPTLKIFMHGIPT--EYYGPRKAELLVRYLKKF 148
             P+ +AK+DA + +    A++ +I  FPTLKI  +G  +  +Y GPR+AE +V YLKK 
Sbjct: 79  NPPLALAKIDASEEANKEFANEYKIQGFPTLKILRNGGKSVQDYNGPREAEGIVTYLKKQ 138

Query: 149 VAP-DVSILNSDAEVSDFVEN---AGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKD 204
             P  V I ++D+      E    A   FP   G   D    S +AL  K +A +  A  
Sbjct: 139 SGPASVEIKSADSATEVVGEKNVVAVGVFPKLSGDEFD----SFMALAEKLRADYDFAHT 194

Query: 205 FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLN 264
                +   +  + PA+   +P ++E  +    F+ E LE+F+K++ +PL    + D  N
Sbjct: 195 LDAKFLPRGESVEGPAVRLFKP-FDELFVDSKDFNGEALEKFVKESSIPLVTVFDSDPNN 253

Query: 265 ------LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCY-VGIKQFADFA 317
                   +    K ++ +  + T   ++ L +  +  A++N++    + VG  + +  A
Sbjct: 254 HPYVAKFFESPATKAMMFV--NFTGATAEALKSKYREVATSNKDQSLAFLVGDAESSQGA 311

Query: 318 DTFEANKKSKLPKMVVWD-GNENYLTVSINV 347
             +   ++S++P +++    N+ YL V++ V
Sbjct: 312 FQYFGLEESQVPLIIIQTPDNKKYLKVNVEV 342

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P54399|PDI_DROME Protein disulfide-isomerase OS=Drosophila melanogaster GN=Pdi PE=2 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 125/243 (51%), Gaps = 10/243 (4%)

Query: 24  MLLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLD 83
           + L    +++  E + K++  V+     NF   I+  +++LV+FYAPWCGHCK LAP+  
Sbjct: 8   LFLAASYVAASAEAEVKVEEGVLVATVDNFKQLIADNEFVLVEFYAPWCGHCKALAPEYA 67

Query: 84  EAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVR 143
           +AA  LA+ + PI +AKVDA     LA +  +  +PTLK F  G P EY G R+A  ++ 
Sbjct: 68  KAAQQLAEKESPIKLAKVDATVEGELAEQYAVRGYPTLKFFRSGSPVEYSGGRQAADIIA 127

Query: 144 YLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKA----WF 199
           ++ K   P    L S A+   F+++        IGF  D  + S  A  + K A     F
Sbjct: 128 WVTKKTGPPAKDLTSVADAEQFLKDNEI---AIIGFFKD--LESEEAKTFTKVANALDSF 182

Query: 200 AVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPIN 259
                 + D +  Y+  K   +V  +P  ++ ++F G  +EE L++F +   LPL V  N
Sbjct: 183 VFGVSSNADVIAKYEA-KDNGVVLFKPFDDKKSVFEGELNEENLKKFAQVQSLPLIVDFN 241

Query: 260 QDT 262
            ++
Sbjct: 242 HES 244

Participates in the folding of proteins containing disulfide bonds.

Drosophila melanogaster (taxid: 7227)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P80284|PDI_HORVU Protein disulfide-isomerase OS=Hordeum vulgare GN=PDI PE=1 SV=2

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 76/111 (68%), Gaps = 4/111 (3%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA- 103
           V+ L   NFD AI    +ILV+FYAPWCGHCK LAP+ ++AA +L+K    IV+AKVDA 
Sbjct: 40  VLTLHADNFDDAIGQHPFILVEFYAPWCGHCKSLAPEYEKAAQLLSKHDPAIVLAKVDAN 99

Query: 104 -DKYSRLASKQEIDAFPTLKIFMHGIPT--EYYGPRKAELLVRYLKKFVAP 151
            +K   LA K E+  FPTLKIF +G  +  EY GPR+AE +V YLKK V P
Sbjct: 100 DEKNKPLAGKYEVQGFPTLKIFRNGGKSIQEYKGPREAEGIVEYLKKQVGP 150

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Hordeum vulgare (taxid: 4513)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
255586469	433	protein disulfide isomerase, putative [R	0.903	0.757	0.714	1e-139
321266521	422	protein disulfide isomerase-like protein	0.873	0.751	0.712	1e-135
225470790	438	PREDICTED: protein disulfide-isomerase 5	0.903	0.748	0.693	1e-132
296081074	396	unnamed protein product [Vitis vinifera]	0.903	0.828	0.693	1e-132
297846626	440	hypothetical protein ARALYDRAFT_473690 [	0.865	0.713	0.697	1e-130
8778373	473	F15O4.20 [Arabidopsis thaliana]	0.845	0.649	0.713	1e-130
18399786	440	protein PDI-like 5-2 [Arabidopsis thalia	0.845	0.697	0.713	1e-130
320388283	437	protein disulfide isomerase-like protein	0.914	0.759	0.644	1e-129
224145166	398	predicted protein [Populus trichocarpa]	0.823	0.751	0.732	1e-129
224135931	419	predicted protein [Populus trichocarpa]	0.848	0.735	0.721	1e-128

>gi|255586469|ref|XP_002533878.1| protein disulfide isomerase, putative [Ricinus communis] gi|223526179|gb|EEF28509.1| protein disulfide isomerase, putative [Ricinus communis]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/329 (71%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 16  LLLTGRGMMLLTGRGLSSEEET-KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGH 74
           L++T   + LL     SSEE   KFK+DGKV+ELDESNFD AISSFD+I VDFYAPWCGH
Sbjct: 4   LVVTISILSLLISVSQSSEESNEKFKVDGKVLELDESNFDLAISSFDFIFVDFYAPWCGH 63

Query: 75  CKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYG 134
           CKRL+P+LD AAP+L++LK+PIVIAKV+ADKY+RLASK +ID +PTLKIFMHG+P +YYG
Sbjct: 64  CKRLSPELDAAAPVLSQLKQPIVIAKVNADKYTRLASKFDIDGYPTLKIFMHGVPVDYYG 123

Query: 135 PRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYK 194
           PRKA+LLVRYLKKFVAPDV++L+SD  ++DFV+ AG  FP+FIGFG++E+++SNL LKYK
Sbjct: 124 PRKADLLVRYLKKFVAPDVAVLDSDVAITDFVQEAGMSFPIFIGFGVNETMVSNLGLKYK 183

Query: 195 KKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPL 254
           KKAWF+VA DFSE  MV YDFDKVPALVA+ PSYNE +IFYGPF+E+FLE+FIKQNFLP 
Sbjct: 184 KKAWFSVANDFSEGVMVQYDFDKVPALVAVHPSYNEQSIFYGPFEEKFLEDFIKQNFLPP 243

Query: 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFA 314
           +VP+N DTL +LKDD+RKIVL I+EDE++EKSQKL+  LKAAASANR+LVF YVG+KQ+ 
Sbjct: 244 AVPMNHDTLKILKDDERKIVLTIMEDESDEKSQKLIKLLKAAASANRDLVFGYVGVKQWE 303

Query: 315 DFADTFEANKKSKLPKMVVWDGNENYLTV 343
            FADTF  NKK+KLPKMVVW+G+E YL V
Sbjct: 304 GFADTFGGNKKTKLPKMVVWNGDEEYLLV 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|321266521|gb|ADW78597.1| protein disulfide isomerase-like protein [Hibiscus cannabinus]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/320 (71%), Positives = 278/320 (86%), Gaps = 3/320 (0%)

Query: 24  MLLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLD 83
           +L  G G ++ E    K DGKV+ELDESNFDSAISSFDYILVD YAPWCGHCKRL+PQLD
Sbjct: 5   ILNVGVGSTASE---LKADGKVLELDESNFDSAISSFDYILVDIYAPWCGHCKRLSPQLD 61

Query: 84  EAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVR 143
           EAAP+LA L+EPIV+AKV+ADK++RLASK +ID +PTLK FMHG+  EY GPRKA+LLV+
Sbjct: 62  EAAPVLAGLEEPIVLAKVNADKFTRLASKYDIDGYPTLKFFMHGVSMEYSGPRKADLLVQ 121

Query: 144 YLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAK 203
           YLKKFVAPDVSIL+SD+ ++DFVE AGTFFP++IGFGL+E+V+SNLA+KYKKKAWF+VAK
Sbjct: 122 YLKKFVAPDVSILSSDSAINDFVEAAGTFFPIYIGFGLNETVVSNLAVKYKKKAWFSVAK 181

Query: 204 DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTL 263
           DFS+D MVLYDFDKVP+LVAL PSY + ++FYGPF++ FL +FIKQN LPL VP+N DTL
Sbjct: 182 DFSDDAMVLYDFDKVPSLVALHPSYKQQSVFYGPFEDTFLGDFIKQNLLPLVVPLNHDTL 241

Query: 264 NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEAN 323
            LLKD+ RKIVL I+ DE E++SQ L+  L+AAASANR+LVF YVG+KQ+ DFAD FEAN
Sbjct: 242 KLLKDEDRKIVLTIIADENEDQSQNLIKLLRAAASANRDLVFSYVGVKQWEDFADKFEAN 301

Query: 324 KKSKLPKMVVWDGNENYLTV 343
           +KSKLPKM+VW+G+  YL+V
Sbjct: 302 EKSKLPKMIVWNGDVEYLSV 321

Source: Hibiscus cannabinus

Species: Hibiscus cannabinus

Genus: Hibiscus

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470790|ref|XP_002269656.1| PREDICTED: protein disulfide-isomerase 5-2 [Vitis vinifera]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/330 (69%), Positives = 275/330 (83%), Gaps = 2/330 (0%)

Query: 16  LLLTGRGMMLLTGRGL--SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCG 73
           L + G G+  L+   L  SS     F  DG V+EL +SNFDSAIS+FD+ILVDFYAPWCG
Sbjct: 5   LSVMGVGVATLSIFALLFSSVSSHDFPTDGTVLELHDSNFDSAISAFDFILVDFYAPWCG 64

Query: 74  HCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYY 133
           HCKRLAP+LD AAP+LA LKEPIVIAKV+ADK++RLA K +ID FPTLK+F+ G+P +YY
Sbjct: 65  HCKRLAPELDAAAPVLASLKEPIVIAKVNADKFTRLAVKYDIDGFPTLKLFIRGVPMDYY 124

Query: 134 GPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKY 193
           GPRKA+LLVR+LKKFVAPDVS+L SD+ +S FVE AGT FP++IGFGL+ES++SNLA+KY
Sbjct: 125 GPRKADLLVRFLKKFVAPDVSVLVSDSAISSFVEAAGTHFPIYIGFGLNESMISNLAIKY 184

Query: 194 KKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP 253
           KKKAWF+VAKDFSED MV YDFDKVPALV+L PSYNEH++FYGPFD EFLE+F+KQ   P
Sbjct: 185 KKKAWFSVAKDFSEDVMVAYDFDKVPALVSLHPSYNEHSVFYGPFDGEFLEDFMKQTLFP 244

Query: 254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF 313
           L +PIN DTL LLKDD RKI L  V+DE +EKS+KL+  LKAAASANR+LVF +VGIKQ+
Sbjct: 245 LVLPINYDTLKLLKDDDRKIFLTFVDDELDEKSKKLINLLKAAASANRDLVFGFVGIKQW 304

Query: 314 ADFADTFEANKKSKLPKMVVWDGNENYLTV 343
            +FAD+F ANKK+KLPKMVVWDG+  Y  V
Sbjct: 305 GEFADSFGANKKTKLPKMVVWDGDNQYFEV 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081074|emb|CBI18268.3| unnamed protein product [Vitis vinifera]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/330 (69%), Positives = 275/330 (83%), Gaps = 2/330 (0%)

Query: 16  LLLTGRGMMLLTGRGL--SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCG 73
           L + G G+  L+   L  SS     F  DG V+EL +SNFDSAIS+FD+ILVDFYAPWCG
Sbjct: 5   LSVMGVGVATLSIFALLFSSVSSHDFPTDGTVLELHDSNFDSAISAFDFILVDFYAPWCG 64

Query: 74  HCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYY 133
           HCKRLAP+LD AAP+LA LKEPIVIAKV+ADK++RLA K +ID FPTLK+F+ G+P +YY
Sbjct: 65  HCKRLAPELDAAAPVLASLKEPIVIAKVNADKFTRLAVKYDIDGFPTLKLFIRGVPMDYY 124

Query: 134 GPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKY 193
           GPRKA+LLVR+LKKFVAPDVS+L SD+ +S FVE AGT FP++IGFGL+ES++SNLA+KY
Sbjct: 125 GPRKADLLVRFLKKFVAPDVSVLVSDSAISSFVEAAGTHFPIYIGFGLNESMISNLAIKY 184

Query: 194 KKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP 253
           KKKAWF+VAKDFSED MV YDFDKVPALV+L PSYNEH++FYGPFD EFLE+F+KQ   P
Sbjct: 185 KKKAWFSVAKDFSEDVMVAYDFDKVPALVSLHPSYNEHSVFYGPFDGEFLEDFMKQTLFP 244

Query: 254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF 313
           L +PIN DTL LLKDD RKI L  V+DE +EKS+KL+  LKAAASANR+LVF +VGIKQ+
Sbjct: 245 LVLPINYDTLKLLKDDDRKIFLTFVDDELDEKSKKLINLLKAAASANRDLVFGFVGIKQW 304

Query: 314 ADFADTFEANKKSKLPKMVVWDGNENYLTV 343
            +FAD+F ANKK+KLPKMVVWDG+  Y  V
Sbjct: 305 GEFADSFGANKKTKLPKMVVWDGDNQYFEV 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846626|ref|XP_002891194.1| hypothetical protein ARALYDRAFT_473690 [Arabidopsis lyrata subsp. lyrata] gi|297337036|gb|EFH67453.1| hypothetical protein ARALYDRAFT_473690 [Arabidopsis lyrata subsp. lyrata]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/314 (69%), Positives = 265/314 (84%)

Query: 31  LSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILA 90
           + +  + +F +DG V+EL +SNFDSAIS+FD I VDFYAPWCGHCKRL P+LD AAPILA
Sbjct: 20  IPASSDDQFTVDGTVLELTDSNFDSAISTFDCIFVDFYAPWCGHCKRLNPELDAAAPILA 79

Query: 91  KLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVA 150
           KLK+PI+IAK++ADKYSRLA K EIDAFPTL ++ HG+P EYYGPRKA+LLVRYLKKFVA
Sbjct: 80  KLKQPIIIAKLNADKYSRLARKIEIDAFPTLMLYNHGVPMEYYGPRKADLLVRYLKKFVA 139

Query: 151 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTM 210
           PDV++L SD+ V +FVE+AGTFFP+FIGFGL+ES++S L  KYKKKAWFAVAKD SEDTM
Sbjct: 140 PDVAVLESDSAVKEFVEDAGTFFPVFIGFGLNESLISGLGGKYKKKAWFAVAKDVSEDTM 199

Query: 211 VLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDK 270
           V YDFDK PALV   P+YNEH++FYGPF++ FLEEF+KQ+F PL +PINQDTL LLKDD+
Sbjct: 200 VSYDFDKAPALVVKHPTYNEHSVFYGPFEDGFLEEFVKQSFFPLILPINQDTLKLLKDDE 259

Query: 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPK 330
           RKIVL IVEDET E   KL+  L+AAA ANR+LVF YVG+KQF +F D+F  +KK+ LPK
Sbjct: 260 RKIVLTIVEDETHESLDKLIKALRAAAHANRDLVFGYVGVKQFEEFVDSFHVDKKTNLPK 319

Query: 331 MVVWDGNENYLTVS 344
           +VVWDG+E Y  V+
Sbjct: 320 IVVWDGDEEYDQVT 333

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778373|gb|AAF79381.1|AC007887_40 F15O4.20 [Arabidopsis thaliana]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/307 (71%), Positives = 263/307 (85%)

Query: 38  KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV 97
           +F +DG V+EL +SNFDSAIS+FD I VDFYAPWCGHCKRL P+LD AAPILAKLK+PIV
Sbjct: 27  QFTLDGTVLELTDSNFDSAISTFDCIFVDFYAPWCGHCKRLNPELDAAAPILAKLKQPIV 86

Query: 98  IAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILN 157
           IAK++ADKYSRLA K EIDAFPTL ++ HG+P EYYGPRKA+LLVRYLKKFVAPDV++L 
Sbjct: 87  IAKLNADKYSRLARKIEIDAFPTLMLYNHGVPMEYYGPRKADLLVRYLKKFVAPDVAVLE 146

Query: 158 SDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDK 217
           SD+ V +FVE+AGTFFP+FIGFGL+ES++S L  KYKKKAWFAV+K+ SEDTMV YDFDK
Sbjct: 147 SDSTVKEFVEDAGTFFPVFIGFGLNESIISGLGRKYKKKAWFAVSKEVSEDTMVSYDFDK 206

Query: 218 VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAI 277
            PALVA  P+YNEH++FYGPF++ FLEEF+KQ+FLPL +PIN DTL LLKDD+RKIVL I
Sbjct: 207 APALVANHPTYNEHSVFYGPFEDGFLEEFVKQSFLPLILPINHDTLKLLKDDERKIVLTI 266

Query: 278 VEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337
           VEDET E  +KL   L+AAA ANR+LVF YVG+KQF +F D+F  +KK+ LPK+VVWDG+
Sbjct: 267 VEDETHESLEKLYKALRAAAHANRDLVFGYVGVKQFEEFVDSFHVDKKTNLPKIVVWDGD 326

Query: 338 ENYLTVS 344
           E Y  V+
Sbjct: 327 EEYDQVT 333

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399786|ref|NP_564462.1| protein PDI-like 5-2 [Arabidopsis thaliana] gi|75332171|sp|Q94F09.1|PDI52_ARATH RecName: Full=Protein disulfide-isomerase 5-2; Short=AtPDIL5-2; AltName: Full=Protein disulfide-isomerase 7-1; Short=AtPDIL7-1; AltName: Full=Protein disulfide-isomerase 8; Short=PDI8; Flags: Precursor gi|14423498|gb|AAK62431.1|AF386986_1 Unknown protein [Arabidopsis thaliana] gi|31376373|gb|AAP49513.1| At1g35620 [Arabidopsis thaliana] gi|332193697|gb|AEE31818.1| protein PDI-like 5-2 [Arabidopsis thaliana]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/307 (71%), Positives = 263/307 (85%)

Query: 38  KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV 97
           +F +DG V+EL +SNFDSAIS+FD I VDFYAPWCGHCKRL P+LD AAPILAKLK+PIV
Sbjct: 27  QFTLDGTVLELTDSNFDSAISTFDCIFVDFYAPWCGHCKRLNPELDAAAPILAKLKQPIV 86

Query: 98  IAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILN 157
           IAK++ADKYSRLA K EIDAFPTL ++ HG+P EYYGPRKA+LLVRYLKKFVAPDV++L 
Sbjct: 87  IAKLNADKYSRLARKIEIDAFPTLMLYNHGVPMEYYGPRKADLLVRYLKKFVAPDVAVLE 146

Query: 158 SDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDK 217
           SD+ V +FVE+AGTFFP+FIGFGL+ES++S L  KYKKKAWFAV+K+ SEDTMV YDFDK
Sbjct: 147 SDSTVKEFVEDAGTFFPVFIGFGLNESIISGLGRKYKKKAWFAVSKEVSEDTMVSYDFDK 206

Query: 218 VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAI 277
            PALVA  P+YNEH++FYGPF++ FLEEF+KQ+FLPL +PIN DTL LLKDD+RKIVL I
Sbjct: 207 APALVANHPTYNEHSVFYGPFEDGFLEEFVKQSFLPLILPINHDTLKLLKDDERKIVLTI 266

Query: 278 VEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337
           VEDET E  +KL   L+AAA ANR+LVF YVG+KQF +F D+F  +KK+ LPK+VVWDG+
Sbjct: 267 VEDETHESLEKLYKALRAAAHANRDLVFGYVGVKQFEEFVDSFHVDKKTNLPKIVVWDGD 326

Query: 338 ENYLTVS 344
           E Y  V+
Sbjct: 327 EEYDQVT 333

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|320388283|gb|ADW27382.1| protein disulfide isomerase-like protein [Hibiscus cannabinus]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/340 (64%), Positives = 282/340 (82%), Gaps = 8/340 (2%)

Query: 4   MSKGRIWILLCLLLLTGRGMMLLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYI 63
           M K R+ I+  LL          TG  L+++E   FK+DGKV+ELDESNFDSAISSFD+I
Sbjct: 1   MPKMRLHIIFLLLFCR-----FGTGISLTADE---FKVDGKVLELDESNFDSAISSFDFI 52

Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123
           LVDF APWC HCK L+PQLDEAAP+LA LKEPIVIAKV+ADK++RLASK ++DA+PTLK+
Sbjct: 53  LVDFXAPWCSHCKHLSPQLDEAAPVLAGLKEPIVIAKVNADKFTRLASKHDVDAYPTLKL 112

Query: 124 FMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE 183
           F+HG+  EYYGPR+++ LV+YLKKFVAP+VSIL SD+ +S F++ AGTFFP+FIGFGL+E
Sbjct: 113 FIHGVSMEYYGPRQSDRLVQYLKKFVAPNVSILTSDSAISGFIKEAGTFFPIFIGFGLNE 172

Query: 184 SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFL 243
           +V+SNLA+KYK++AWF+V KDFS + +VLYD +KVPALV + P+Y + +IFYGPF+++FL
Sbjct: 173 TVLSNLAVKYKERAWFSVTKDFSSEAVVLYDLEKVPALVVIHPNYKQQSIFYGPFEDKFL 232

Query: 244 EEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANREL 303
           E+FIKQNFLP  VP+N +TL LLKD++RKIVL I  DE E++SQ L+  LK AASANR+L
Sbjct: 233 EDFIKQNFLPPVVPLNHETLKLLKDEERKIVLTITADENEDQSQNLIKLLKDAASANRDL 292

Query: 304 VFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTV 343
           VF Y G+KQ+ DFAD FEAN+K+KLPKM+VW+G+E Y +V
Sbjct: 293 VFGYFGLKQWEDFADKFEANEKTKLPKMIVWNGDEEYFSV 332

Source: Hibiscus cannabinus

Species: Hibiscus cannabinus

Genus: Hibiscus

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145166|ref|XP_002325550.1| predicted protein [Populus trichocarpa] gi|222862425|gb|EEE99931.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/299 (73%), Positives = 270/299 (90%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           V+ELDESNFDS IS++DY+ VDFYAPWCGHCKRLAP+LD AAPILA+LK+PIVIAKV+AD
Sbjct: 40  VLELDESNFDSTISAYDYVFVDFYAPWCGHCKRLAPELDVAAPILAELKKPIVIAKVNAD 99

Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSD 164
           KY+RLA K E+D FPTLKI+MHG+PT+YYGPRKAELLV +L+KFVAPDV+ILNSD+ + +
Sbjct: 100 KYTRLARKHEVDGFPTLKIYMHGVPTDYYGPRKAELLVCFLRKFVAPDVTILNSDSAIRE 159

Query: 165 FVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVAL 224
           FVE AGT FP+FIGFGL+E+VMSNLA+KYKKKAWF+VA DFS+D MV YDFDK+PALV++
Sbjct: 160 FVEEAGTHFPIFIGFGLNETVMSNLAIKYKKKAWFSVASDFSDDVMVQYDFDKIPALVSI 219

Query: 225 QPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEE 284
            PSYN+H +FYGPF+EEF+EEFI QN LPL+VPIN +TL +LKDD+RKIVL I+ED++EE
Sbjct: 220 HPSYNDHTVFYGPFEEEFMEEFITQNSLPLAVPINSETLKVLKDDQRKIVLTILEDDSEE 279

Query: 285 KSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTV 343
           KSQ L+  LKAAASANR+LVF +VG+KQ+ +F +TF ANK++KLPKM+VWDG+E YL+V
Sbjct: 280 KSQNLIKILKAAASANRDLVFGFVGVKQWEEFTETFGANKETKLPKMIVWDGDEEYLSV 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135931|ref|XP_002327339.1| predicted protein [Populus trichocarpa] gi|222835709|gb|EEE74144.1| predicted protein [Populus trichocarpa]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/309 (72%), Positives = 274/309 (88%), Gaps = 1/309 (0%)

Query: 35  EETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE 94
           E T+      V+ELDESNFDS I+++DY+ VDFYAPWC HCKRLAP+LD AAPILA+LK+
Sbjct: 12  ESTRADKINTVLELDESNFDSTIAAYDYVFVDFYAPWCTHCKRLAPELDVAAPILAELKK 71

Query: 95  PIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVS 154
           PIVIAKV+ADKY+RLA K E+D +PTLKI+MHG+PTEYYGPRKAELLVR+L+KFVAPDV 
Sbjct: 72  PIVIAKVNADKYTRLARKHEVDGYPTLKIYMHGVPTEYYGPRKAELLVRFLRKFVAPDVV 131

Query: 155 ILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYD 214
           +LNSD+ + +FVE AGT FP+FIGFGL+E+++SNLA+KYKKKAWF+VA DFS+D MV YD
Sbjct: 132 VLNSDSAIREFVEEAGTHFPIFIGFGLNETLISNLAIKYKKKAWFSVASDFSDDVMVQYD 191

Query: 215 FDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIV 274
           FDK+P +V++ PSY++H+IFYGPF+EEFLEEFI+QNFLPL+VPIN DTL +LKDD+RKIV
Sbjct: 192 FDKIPTVVSIHPSYDDHSIFYGPFEEEFLEEFIEQNFLPLAVPINYDTLKVLKDDQRKIV 251

Query: 275 LAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW 334
           L I+EDE+EEKSQKL+ TLKAAASANR LVF YVG+KQ+A+FA+TF A K +KLPKM+VW
Sbjct: 252 LTILEDESEEKSQKLIKTLKAAASANRNLVFGYVGVKQWAEFAETFGA-KGTKLPKMIVW 310

Query: 335 DGNENYLTV 343
           DG E YL+V
Sbjct: 311 DGGEEYLSV 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2014681	440	PDIL5-2 "PDI-like 5-2" [Arabid	0.851	0.702	0.708	4.6e-121
DICTYBASE|DDB_G0291434	513	pdi2 "protein disulfide isomer	0.707	0.500	0.352	4.6e-34
TAIR|locus:2036906	501	PDIL1-1 "AT1G21750" [Arabidops	0.840	0.608	0.306	1.3e-31
TAIR|locus:2204670	508	PDIL1-2 "AT1G77510" [Arabidops	0.848	0.606	0.303	3.7e-30
FB|FBgn0014002	496	Pdi "Protein disulfide isomera	0.807	0.590	0.297	9.9e-29
RGD|3244	509	P4hb "prolyl 4-hydroxylase, be	0.724	0.516	0.315	2e-28
UNIPROTKB|P05307	510	P4HB "Protein disulfide-isomer	0.707	0.503	0.333	5.9e-28
UNIPROTKB|A6H7J6	510	P4HB "Prolyl 4-hydroxylase, be	0.707	0.503	0.333	7.7e-28
UNIPROTKB|Q53LQ0	512	PDIL1-1 "Protein disulfide iso	0.936	0.664	0.282	1e-27
ZFIN|ZDB-GENE-080610-1	509	p4hb "procollagen-proline, 2-o	0.716	0.510	0.322	1.3e-27

TAIR|locus:2014681 PDIL5-2 "PDI-like 5-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 219/309 (70%), Positives = 264/309 (85%)

Query:    32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK 91
             S+  + +F +DG V+EL +SNFDSAIS+FD I VDFYAPWCGHCKRL P+LD AAPILAK
Sbjct:    21 SASSDDQFTLDGTVLELTDSNFDSAISTFDCIFVDFYAPWCGHCKRLNPELDAAAPILAK 80

Query:    92 LKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAP 151
             LK+PIVIAK++ADKYSRLA K EIDAFPTL ++ HG+P EYYGPRKA+LLVRYLKKFVAP
Sbjct:    81 LKQPIVIAKLNADKYSRLARKIEIDAFPTLMLYNHGVPMEYYGPRKADLLVRYLKKFVAP 140

Query:   152 DVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMV 211
             DV++L SD+ V +FVE+AGTFFP+FIGFGL+ES++S L  KYKKKAWFAV+K+ SEDTMV
Sbjct:   141 DVAVLESDSTVKEFVEDAGTFFPVFIGFGLNESIISGLGRKYKKKAWFAVSKEVSEDTMV 200

Query:   212 LYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKR 271
              YDFDK PALVA  P+YNEH++FYGPF++ FLEEF+KQ+FLPL +PIN DTL LLKDD+R
Sbjct:   201 SYDFDKAPALVANHPTYNEHSVFYGPFEDGFLEEFVKQSFLPLILPINHDTLKLLKDDER 260

Query:   272 KIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKM 331
             KIVL IVEDET E  +KL   L+AAA ANR+LVF YVG+KQF +F D+F  +KK+ LPK+
Sbjct:   261 KIVLTIVEDETHESLEKLYKALRAAAHANRDLVFGYVGVKQFEEFVDSFHVDKKTNLPKI 320

Query:   332 VVWDGNENY 340
             VVWDG+E Y
Sbjct:   321 VVWDGDEEY 329

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0291434 pdi2 "protein disulfide isomerase" [Dictyostelium discoideum (taxid:44689)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 96/272 (35%), Positives = 148/272 (54%)

Query:    48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107
             LD  NF +++S  D  LV FYAPWCGHCK L P  +EAA  L+  K+ I IAKVD  ++ 
Sbjct:    46 LDSDNFHNSVSEHDVTLVMFYAPWCGHCKTLKPLYEEAAKQLSANKK-IAIAKVDCTQHE 104

Query:   108 RLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVE 167
             +L  + ++  +PTL +F +G    Y G R  + +V+ L++ + P +S L S+ ++ +F +
Sbjct:   105 QLCKQNKVQGYPTLVVFKNGKAEPYEGDRTTKSIVQTLEEELKPTISTLESNEDIEEFKK 164

Query:   168 NAGTFFPLFIGFGLDE--SVMSNLALKYKKKAWFAVA--KDFSEDTMVLYDFDKVPALVA 223
                     F     D+   + S LA   KK A FAV   KDFS++ +     +  P +V 
Sbjct:   165 QHPISVVGFFDNDHDDRFKLFSELAGNNKKSAKFAVVIDKDFSKEHV-----ESTPNVVL 219

Query:   224 LQPSYNEHNIFY-GPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA-IVEDE 281
              + S++E  + + G FD E L +FIK N +PL   IN++T    K +   + LA +  D 
Sbjct:   220 FR-SFDEPTVAHKGEFDSESLIKFIKGNSVPLLGEINRNTYK--KYESIAVPLAYLFIDS 276

Query:   282 TEEKSQKLVTTLKAAASANRELVFCYVGIKQF 313
             T++ +Q L    K A S     VFC+V +K+F
Sbjct:   277 TQDNTQVLEDVKKIATSQKGNAVFCWVDMKKF 308

GO:0005615 "extracellular space" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0019953 "sexual reproduction" evidence=IEP

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=ISS

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2036906 PDIL1-1 "AT1G21750" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 101/329 (30%), Positives = 174/329 (52%)

Query:    35 EETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE 94
             EET+ K    V+ LD +NF   I+  D+I+V+FYAPWCGHCK+LAP+ ++AA  L+    
Sbjct:    24 EETETK--EFVLTLDHTNFTDTINKHDFIVVEFYAPWCGHCKQLAPEYEKAASALSSNVP 81

Query:    95 PIVIAKVDADKYSR--LASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYLKKFVA 150
             P+V+AK+DA + +    A++ E+  FPT+KIF +G     EY GPR+AE +V YLKK   
Sbjct:    82 PVVLAKIDASEETNREFATQYEVQGFPTIKIFRNGGKAVQEYNGPREAEGIVTYLKKQSG 141

Query:   151 PDVSILNSDAEVSDFVENAGT----FFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFS 206
             P  + + S  + S+ V +        FP   G   D S M+ +A K + +  FA   D  
Sbjct:   142 PASAEIKSADDASEVVSDKKVVVVGIFPKLSGSEFD-SFMA-IAEKLRSELDFAHTSDAK 199

Query:   207 EDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLN-- 264
                +   +      +V L   ++E  +    FD E LE+F+K++ +PL    ++D  N  
Sbjct:   200 --LLPRGESSVTGPVVRLFKPFDEQFVDSKDFDGEALEKFVKESSIPLITVFDKDPNNHP 257

Query:   265 -LLK---DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYV-GIKQFADFADT 319
              ++K       K +L I  + T E ++ L +  +  A++N+     ++ G  + +  A  
Sbjct:   258 YVIKFFESTNTKAMLFI--NFTGEGAESLKSKYREVATSNKGQGLSFLLGDAENSQGAFQ 315

Query:   320 FEANKKSKLPKMVVWDGNEN-YLTVSINV 347
             +   ++S++P +++   ++  YL  ++ V
Sbjct:   316 YFGLEESQVPLIIIQTADDKKYLKTNVEV 344

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009579 "thylakoid" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0000327 "lytic vacuole within protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

TAIR|locus:2204670 PDIL1-2 "AT1G77510" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 3.7e-30, P = 3.7e-30
 Identities = 99/326 (30%), Positives = 172/326 (52%)

Query:    33 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL 92
             SEE  +F     V+ LD SNF   IS  D+I+V+FYAPWCGHC++LAP+ ++AA  L+  
Sbjct:    24 SEETKEF-----VLTLDHSNFTETISKHDFIVVEFYAPWCGHCQKLAPEYEKAASELSSH 78

Query:    93 KEPIVIAKVDADKYSR--LASKQEIDAFPTLKIFMHGIPT--EYYGPRKAELLVRYLKKF 148
               P+ +AK+DA + +    A++ +I  FPTLKI  +G  +  +Y GPR+AE +V YLKK 
Sbjct:    79 NPPLALAKIDASEEANKEFANEYKIQGFPTLKILRNGGKSVQDYNGPREAEGIVTYLKKQ 138

Query:   149 VAP-DVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSE 207
               P  V I ++D+      E       +F     DE   S +AL  K +A +  A     
Sbjct:   139 SGPASVEIKSADSATEVVGEKNVVAVGVFPKLSGDE-FDSFMALAEKLRADYDFAHTLDA 197

Query:   208 DTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLN--- 264
               +   +  + PA+   +P ++E  +    F+ E LE+F+K++ +PL    + D  N   
Sbjct:   198 KFLPRGESVEGPAVRLFKP-FDELFVDSKDFNGEALEKFVKESSIPLVTVFDSDPNNHPY 256

Query:   265 LLKDDKRKIVLAIV-EDETEEKSQKLVTTLKAAASANRELVFCY-VGIKQFADFADTFEA 322
             + K  +     A++  + T   ++ L +  +  A++N++    + VG  + +  A  +  
Sbjct:   257 VAKFFESPATKAMMFVNFTGATAEALKSKYREVATSNKDQSLAFLVGDAESSQGAFQYFG 316

Query:   323 NKKSKLPKMVVWD-GNENYLTVSINV 347
              ++S++P +++    N+ YL V++ V
Sbjct:   317 LEESQVPLIIIQTPDNKKYLKVNVEV 342

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

FB|FBgn0014002 Pdi "Protein disulfide isomerase" [Drosophila melanogaster (taxid:7227)]

 Score = 322 (118.4 bits), Expect = 9.9e-29, P = 9.9e-29
 Identities = 90/303 (29%), Positives = 144/303 (47%)

Query:    32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK 91
             ++  E + K++  V+     NF   I+  +++LV+FYAPWCGHCK LAP+  +AA  LA+
Sbjct:    16 AASAEAEVKVEEGVLVATVDNFKQLIADNEFVLVEFYAPWCGHCKALAPEYAKAAQQLAE 75

Query:    92 LKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAP 151
              + PI +AKVDA     LA +  +  +PTLK F  G P EY G R+A  ++ ++ K   P
Sbjct:    76 KESPIKLAKVDATVEGELAEQYAVRGYPTLKFFRSGSPVEYSGGRQAADIIAWVTKKTGP 135

Query:   152 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD-ESVMSNLALKYKKKA-WFAVAKDFSEDT 209
                 L S A+   F+++        IGF  D ES  +    K       F      + D 
Sbjct:   136 PAKDLTSVADAEQFLKDNEI---AIIGFFKDLESEEAKTFTKVANALDSFVFGVSSNADV 192

Query:   210 MVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDD 269
             +  Y+  K   +V  +P  ++ ++F G  +EE L++F +   LPL V  N ++ + +   
Sbjct:   193 IAKYEA-KDNGVVLFKPFDDKKSVFEGELNEENLKKFAQVQSLPLIVDFNHESASKIFGG 251

Query:   270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFE--ANKKS 326
               K  L           +K V  LK  A   R+ ++F  +   +  D    FE     K 
Sbjct:   252 SIKSHLLFFVSREGGHIEKYVDPLKEIAKKYRDDILFVTISSDE-EDHTRIFEFFGMNKE 310

Query:   327 KLP 329
             ++P
Sbjct:   311 EVP 313

GO:0006457 "protein folding" evidence=ISS;NAS

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=NAS

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0060187 "cell pole" evidence=IDA

GO:0070732 "spindle envelope" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0045169 "fusome" evidence=IDA

RGD|3244 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 320 (117.7 bits), Expect = 2.0e-28, P = 2.0e-28
 Identities = 86/273 (31%), Positives = 134/273 (49%)

Query:    42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
             +  V+ L +SNF  A+++ +Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKV
Sbjct:    25 EDNVLVLKKSNFAEALAAHNYLLVEFYAPWCGHCKALAPEYAKAAAKLKAEGSEIRLAKV 84

Query:   102 DADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNS 158
             DA + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  + L+ 
Sbjct:    85 DATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLSD 144

Query:   159 DAEVSDFVENAG-TFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDK 217
              A     V+++  T    F   G D +    LA +      F +  +   D    Y  DK
Sbjct:   145 TAAAESLVDSSEVTVIGFFKDAGSDSAKQFLLAAEAVDDIPFGITSN--SDVFSKYQLDK 202

Query:   218 VPALVALQPSYNE-HNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTL-NLLKDDKRKIVL 275
                 V L   ++E  N F G   +E L +FIK N LPL +   + T   +   + +  +L
Sbjct:   203 DG--VVLFKKFDEGRNNFEGEITKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHIL 260

Query:   276 AIVEDETEEKSQKLVTTLKAAASANRELVFCYV 308
               +     +   KL    KAA     +++F ++
Sbjct:   261 LFLPKSVSDYDGKLSNFKKAAEGFKGKILFIFI 293

GO:0003756 "protein disulfide isomerase activity" evidence=IMP

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=IMP

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|P05307 P4HB "Protein disulfide-isomerase" [Bos taurus (taxid:9913)]

 Score = 316 (116.3 bits), Expect = 5.9e-28, P = 5.9e-28
 Identities = 91/273 (33%), Positives = 135/273 (49%)

Query:    45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
             V+ L + NFD A+++  Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKVDA 
Sbjct:    28 VLVLHKGNFDEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 87

Query:   105 KYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAE 161
             + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  S L+  A 
Sbjct:    88 EESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAASTLSDGAA 147

Query:   162 VSDFVENAGTFFPLFIGFGLD-ESVMSN---LALKYKKKAWFAVAKDFSEDTMVLYDFDK 217
                 VE++       IGF  D ES  +    LA +      F +  +   D    Y  DK
Sbjct:   148 AEALVESSEV---AVIGFFKDMESDSAKQFFLAAEVIDDIPFGITSN--SDVFSKYQLDK 202

Query:   218 VPALVALQPSYNE-HNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTL-NLLKDDKRKIVL 275
                 V L   ++E  N F G   +E L +FIK N LPL +   + T   +   + +  +L
Sbjct:   203 DG--VVLFKKFDEGRNNFEGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHIL 260

Query:   276 AIVEDETEEKSQKLVTTLKAAASANRELVFCYV 308
               +     +   KL    KAA S   +++F ++
Sbjct:   261 LFLPKSVSDYEGKLSNFKKAAESFKGKILFIFI 293

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|A6H7J6 P4HB "Prolyl 4-hydroxylase, beta subunit" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 7.7e-28, P = 7.7e-28
 Identities = 91/273 (33%), Positives = 135/273 (49%)

Query:    45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
             V+ L + NFD A+++  Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKVDA 
Sbjct:    28 VLVLHKGNFDEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 87

Query:   105 KYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAE 161
             + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P  S L+  A 
Sbjct:    88 EESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAASTLSDGAA 147

Query:   162 VSDFVENAGTFFPLFIGFGLD-ESVMSN---LALKYKKKAWFAVAKDFSEDTMVLYDFDK 217
                 VE++       IGF  D ES  +    LA +      F +  +   D    Y  DK
Sbjct:   148 AEALVESSEV---AVIGFFKDMESDSAKQFLLAAEAIDDIPFGITSN--SDVFSKYQLDK 202

Query:   218 VPALVALQPSYNE-HNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTL-NLLKDDKRKIVL 275
                 V L   ++E  N F G   +E L +FIK N LPL +   + T   +   + +  +L
Sbjct:   203 DG--VVLFKKFDEGRNNFEGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHIL 260

Query:   276 AIVEDETEEKSQKLVTTLKAAASANRELVFCYV 308
               +     +   KL    KAA S   +++F ++
Sbjct:   261 LFLPKSVSDYEGKLSNFKKAAESFKGKILFIFI 293

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|Q53LQ0 PDIL1-1 "Protein disulfide isomerase-like 1-1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 314 (115.6 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 100/354 (28%), Positives = 169/354 (47%)

Query:     4 MSKGRIWIXXXXXXXXXXXXXXXXXXXXSSEEETKFKIDGKVIELDESNFDSAISSFDYI 63
             M+  + WI                    ++ EE        V+ LD   FD A++   ++
Sbjct:     1 MAISKAWISLLLALAVVLSAPAARAEEAAAAEEGGDAAAEAVLTLDADGFDEAVAKHPFM 60

Query:    64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA--DKYSRLASKQEIDAFPTL 121
             +V+FYAPWCGHCK+LAP+ ++AA  L+K   PIV+AKVDA  +K   LA+K EI  FPTL
Sbjct:    61 VVEFYAPWCGHCKKLAPEYEKAAQELSKHDPPIVLAKVDANDEKNKPLATKYEIQGFPTL 120

Query:   122 KIFMHGIPT--EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGF 179
             KIF +      EY GPR+AE +V YLKK V P    + S  + ++ +++   +  + I  
Sbjct:   121 KIFRNQGKNIQEYKGPREAEGIVEYLKKQVGPASKEIKSPEDATNLIDDKKIYI-VGIFS 179

Query:   180 GLDESVMSN-LALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPF 238
              L  +  +N + +  K ++ +        + +   D      LV L   ++E  +    F
Sbjct:   180 ELSGTEYTNFIEVAEKLRSDYDFGHTLHANHLPRGDAAVERPLVRLFKPFDELVVDSKDF 239

Query:   239 DEEFLEEFIKQNFLPLSVPINQDTLN---LLK---DDKRKIVLAIVEDETEEKSQKLVTT 292
             D   LE+FI  +  P  V  +++  N   LLK       K +L +       +S K V  
Sbjct:   240 DVTALEKFIDASSTPKVVTFDKNPDNHPYLLKFFQSSAAKAMLFLNFSTGPFESFKSVYY 299

Query:   293 LKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NENYLTVSI 345
               A    ++E+ F  +G  + +  A  +   ++ ++P +++ DG ++ +L   +
Sbjct:   300 GAAEEFKDKEIKFL-IGDIEASQGAFQYFGLREDQVPLIIIQDGESKKFLKAHV 352

GO:0005788 "endoplasmic reticulum lumen" evidence=IDA

GO:0034975 "protein folding in endoplasmic reticulum" evidence=IMP

ZFIN|ZDB-GENE-080610-1 p4hb "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" [Danio rerio (taxid:7955)]

 Score = 313 (115.2 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 87/270 (32%), Positives = 131/270 (48%)

Query:    45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
             V+ L +SNF+ A+ +   +LV+FYAPWCGHCK LAP+  +AA +L      I +AKVDA 
Sbjct:    24 VLVLKKSNFEEALKAHPNVLVEFYAPWCGHCKALAPEYSKAAGMLKAEGSDIRLAKVDAT 83

Query:   105 KYSRLASKQEIDAFPTLKIFM---HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAE 161
             + S LA +  +  +PT+K F     G P EY   R+AE +V +LKK   P  + LN   +
Sbjct:    84 EESELAQEFGVRGYPTIKFFKGGEKGNPKEYSAGRQAEDIVSWLKKRTGPAATTLNDVMQ 143

Query:   162 VSDFVENAGTFFPLFIGFGLD-ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPA 220
                 + +        IGF  D ES  S   +K   +A   +    + D  V   F+    
Sbjct:   144 AESIIADNEV---AVIGFFKDVESEDSKAFIK-TAEAVDDIPFGITSDDSVFAKFEVAKD 199

Query:   221 LVALQPSYNE-HNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTL-NLLKDDKRKIVLAIV 278
              V L   ++E  N F G   +E L  FIK N LPL +   + T   +   D +  +L  V
Sbjct:   200 SVVLFKKFDEGRNTFDGEVSKESLLNFIKANQLPLVIEFTEQTAPKIFGGDIKSHILMFV 259

Query:   279 EDETEEKSQKLVTTLKAAASANRELVFCYV 308
                 ++   K+    KAA     +++F ++
Sbjct:   260 PKAAKDFQDKMDQFKKAAEGFKGKILFIFI 289

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0JD42	PDI52_ORYSJ	No assigned EC number	0.6437	0.8429	0.7234	yes	no
Q94F09	PDI52_ARATH	No assigned EC number	0.7133	0.8457	0.6977	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.4.1	LOW CONFIDENCE prediction!
3rd Layer	5.3.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009139001 SubName- Full=Chromosome undetermined scaffold_221, whole genome shotgun sequence; (438 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	1e-45
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	1e-35
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	2e-33
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	3e-31
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	1e-30
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	7e-27
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	9e-27
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	4e-23
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	4e-21
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	5e-21
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	6e-21
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	2e-19
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	2e-18
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	2e-18
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	4e-18
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	1e-17
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	6e-17
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	2e-15
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	2e-14
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	2e-12
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	6e-12
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	7e-11
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	9e-11
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	1e-10
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	3e-09
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	1e-08
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	9e-08
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	2e-07
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	3e-07
pfam13848	183	pfam13848, Thioredoxin_6, Thioredoxin-like domain	6e-07
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	3e-06
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	6e-06
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	7e-06
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	8e-06
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	9e-06
pfam13899	81	pfam13899, Thioredoxin_7, Thioredoxin-like	3e-05
cd02963	111	cd02963, TRX_DnaJ, TRX domain, DnaJ domain contain	6e-04
cd03065	120	cd03065, PDI_b_Calsequestrin_N, PDIb family, Calse	0.001
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	0.001
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	0.002
cd03006	113	cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP	0.002
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	0.004

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  161 bits (410), Expect = 1e-45
 Identities = 93/308 (30%), Positives = 141/308 (45%), Gaps = 19/308 (6%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           V+ L + NFD  I S +++LV+FYAPWCGHCK LAP+ ++AA  L K   PI +AKVDA 
Sbjct: 3   VLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT 62

Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPT--EYYGPRKAELLVRYLKKFVAPDVSILNSDAEV 162
           +   LA K  +  +PTLKIF +G  +  +Y GPR A+ +V+Y+KK   P V  + + A++
Sbjct: 63  EEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADL 122

Query: 163 SDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKA------WFAVAKDFSEDTMVLYD-F 215
             F+ +      + IGF   + + S L   +   A      +F  A             F
Sbjct: 123 EAFLADD---DVVVIGF--FKDLDSELNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAF 177

Query: 216 DKVPALVALQPSYNEHNIFYG--PFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKI 273
                L   +    + +   G    D   LE+FI+   LPL     Q+T     +    +
Sbjct: 178 PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLV 237

Query: 274 VLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQFADFADTFEANKKSKLPKM 331
           VL    DE+ +  ++L      AA   R   + F     + F    + F   K  K P +
Sbjct: 238 VLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGL-KAEKFPAV 296

Query: 332 VVWDGNEN 339
            + D   N
Sbjct: 297 AIQDLEGN 304

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score =  134 bits (340), Expect = 1e-35
 Identities = 89/324 (27%), Positives = 138/324 (42%), Gaps = 39/324 (12%)

Query: 3   GMSKGRIWILLCLLLLTGRGMMLLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDY 62
              +  +  L  LL+L       L      S EE        V  L +S FD  I+  + 
Sbjct: 1   IGFRSILSSLFLLLIL-------LAFAVFGSAEEHFISEH--VTVLTDSTFDKFITENEI 51

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           +LV FYAPWCGHCKRLAP+  +AA +L + K  IV+A VDA +   LA +  +  +PT+K
Sbjct: 52  VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111

Query: 123 IFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD 182
            F  G P  Y G R A+ +V ++KK   P V+ + S +E+    +        F+ F  +
Sbjct: 112 FFNKGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKI------FVAFYGE 165

Query: 183 ES--------VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIF 234
            +            +A K+++ A F V K   ++ + +   D             E    
Sbjct: 166 YTSKDSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKD------------EEGVEL 213

Query: 235 YGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLK 294
           +    +E LEEF+     PL   IN +         + +V       T E   K  + ++
Sbjct: 214 FMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFC---GTTEDYDKYKSVVR 270

Query: 295 AAASANRELV-FCYVGIKQFADFA 317
             A   RE   F ++  +QF   A
Sbjct: 271 KVARKLREKYAFVWLDTEQFGSHA 294

Length = 477

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  119 bits (300), Expect = 2e-33
 Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 3/102 (2%)

Query: 46  IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
           +EL + NFD  +     +LV+FYAPWCGHCK LAP+ ++ A  L K    +V+AKVD   
Sbjct: 1   VELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKEL-KGDGKVVVAKVDCTA 59

Query: 106 YSRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYL 145
            + L S+  +  +PT+K+F +G   P +Y GPR  E LV ++
Sbjct: 60  NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  113 bits (285), Expect = 3e-31
 Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 2/101 (1%)

Query: 48  LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107
           L  SNFD  + S   +LV+FYAPWCGHCK LAP+ ++ A  L K    IV+AKVDA    
Sbjct: 1   LTASNFDEIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKK-DPDIVLAKVDATAEK 59

Query: 108 RLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKK 147
            LAS+  +  FPT+K F  G  P +Y G R  E +V ++ +
Sbjct: 60  DLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNE 100

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score =  112 bits (282), Expect = 1e-30
 Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 5/105 (4%)

Query: 45  VIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
           V  L + NFD  ++  D  +LVDFYAPWCG CK LAP+ ++ A    + K+ +  AKVDA
Sbjct: 2   VKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLA---QEYKDDVKFAKVDA 58

Query: 104 DKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKK 147
           D+   LAS+  +  FPT+K F +G   ++Y G R  + LV ++KK
Sbjct: 59  DENPDLASEYGVRGFPTIKFFKNGKKVSDYVGARTKDDLVAFIKK 103

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  102 bits (256), Expect = 7e-27
 Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 45  VIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
           V+EL +SNFD  +      +LV+FYAPWCGHCK LAP+ ++ A + A  ++ +VIAKVDA
Sbjct: 2   VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDA 60

Query: 104 DKYSR-LASKQEIDAFPTLKIFMHGI--PTEYYGPRKAELLVRYL 145
           D+ ++ LA K  +  FPTLK F  G   P +Y G R  E LV+++
Sbjct: 61  DEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score =  101 bits (255), Expect = 9e-27
 Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 6/101 (5%)

Query: 45  VIELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
           V+EL +SNFD   ++S D  LV+FYAPWCGHCK LAP+  +AA     LK  + +  VDA
Sbjct: 2   VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKA---LKGIVKVGAVDA 58

Query: 104 DKYSRLASKQEIDAFPTLKIFMHGI--PTEYYGPRKAELLV 142
           D +  LA +  +  FPT+K+F  G   P +Y G R A+ +V
Sbjct: 59  DVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIV 99

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 92.0 bits (229), Expect = 4e-23
 Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 2/103 (1%)

Query: 44  KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
            V+EL E NFD  I+      V F+APWCGHCKRLAP  ++ A         + IAKVD 
Sbjct: 1   GVLELTEDNFDHHIAE-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC 59

Query: 104 DKYSRLASKQEIDAFPTLKIFMHGI-PTEYYGPRKAELLVRYL 145
            ++  L S+ ++  +PTL +F  G    +Y G R  + L  ++
Sbjct: 60  TQHRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 87.0 bits (216), Expect = 4e-21
 Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 12/112 (10%)

Query: 44  KVIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
            V EL   NFD  + + +Y  LV+FYAPWCGHCK L P+  +AA  L  L   + +A VD
Sbjct: 1   PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVD 57

Query: 103 ADKYSR--LASKQEIDAFPTLKIF------MHGIPTEYYGPRKAELLVRYLK 146
            D+     L  K  +  FPTLK+F            +Y G R A+ +V ++ 
Sbjct: 58  CDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 86.4 bits (214), Expect = 5e-21
 Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 44  KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
            V++LD+S  D      D  LVDFYAPWCGHCK+L P  +E    L     P+ + K+DA
Sbjct: 1   LVLDLDDSFKDVRKE--DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDA 58

Query: 104 DKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK 147
             YS +AS+  +  +PT+K+    +   Y GPR  + +V +  +
Sbjct: 59  TAYSSIASEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIVEFANR 102

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 86.2 bits (214), Expect = 6e-21
 Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 4/104 (3%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           V+ L + +F   +    ++LV FYAPWCGHCK++ P+  +AA  L K     V+A VD  
Sbjct: 2   VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATEL-KEDGKGVLAAVDCT 60

Query: 105 KYSRLASKQE--IDAFPTLKIFMHGIPTEYY-GPRKAELLVRYL 145
           K    A K+E  +  FPT K F +G   E Y G R AE ++ ++
Sbjct: 61  KPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEFM 104

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 81.8 bits (203), Expect = 2e-19
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 51  SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA 110
             F+  I S   ++VDF+APWCG CK +AP L+E    LA+    +   KVD D+   LA
Sbjct: 1   EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEE----LAEEYPKVKFVKVDVDENPELA 56

Query: 111 SKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRYLK 146
            +  + + PT   F +G       G    E L  +L+
Sbjct: 57  EEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFLE 93

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 79.1 bits (196), Expect = 2e-18
 Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 52  NFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA 110
           NFD   + S   +LV+FYAPWCGHCK LAP  +E A  L    + +VIAK+DA     + 
Sbjct: 9   NFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDATAND-VP 66

Query: 111 SKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYL 145
           S+  +D FPT+  F  G    P +Y G R  E L++++
Sbjct: 67  SEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 79.4 bits (196), Expect = 2e-18
 Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 11/111 (9%)

Query: 43  GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEP------I 96
            +++ L   N D  + S + +LV+FYA WC   + L P  +EAA   AK+KE       +
Sbjct: 1   SEIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAA---AKIKEEFPDAGKV 57

Query: 97  VIAKVDADKYSRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYL 145
           V  KVD DK S +A +  I+ +PTLK+F +G  +  EY G R  E L  ++
Sbjct: 58  VWGKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 78.5 bits (194), Expect = 4e-18
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 44  KVIELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
            VI L   +F    ++  +  LVDFYAPWCG C+ L P+L +AA     LK  + +  VD
Sbjct: 2   SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAA---RALKGKVKVGSVD 58

Query: 103 ADKYSRLASKQEIDAFPTLKIF 124
             KY  L  +  I A+PT++++
Sbjct: 59  CQKYESLCQQANIRAYPTIRLY 80

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 48  LDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106
           L ++NFD  I+S D  +LVDF+APWCG CK +AP L+E A    + +  +   K++ D+ 
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELA---KEYEGKVKFVKLNVDEN 57

Query: 107 SRLASKQEIDAFPTLKIFMHG 127
             +A+K  I + PTL +F +G
Sbjct: 58  PDIAAKYGIRSIPTLLLFKNG 78

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 74.9 bits (184), Expect = 6e-17
 Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 50  ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
           ++ F+S +S  + ++VDFYA WCG CKR+AP  +E +    K+    V  KVD D+ S +
Sbjct: 8   QAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKM----VFVKVDVDELSEV 63

Query: 110 ASKQEIDAFPTLKIFMHG 127
           A K+ I + PT K+F +G
Sbjct: 64  AEKENITSMPTFKVFKNG 81

Length = 98

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 39/102 (38%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 51  SNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR 108
            NFD  +   + D +LV+FYAPWCGHCK LAP  +E A      +  +VIAK+DA     
Sbjct: 354 KNFDEIVLDETKD-VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND- 411

Query: 109 LASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKK 147
                E++ FPT+K    G    P  Y G R  E   +++ K
Sbjct: 412 -VPPFEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAK 452

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 4/102 (3%)

Query: 44  KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
           +++ LD  +FD+A++S +   V+FY+P C HC  LAP   E A    ++   I I  V+ 
Sbjct: 2   EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFA---KEMDGVIRIGAVNC 58

Query: 104 DKYSRLASKQEIDAFPTLKIFMHGI-PTEYYGPRKAELLVRY 144
                L   Q ++++P+L +F  G+ P +YYG R  E LV++
Sbjct: 59  GDDRMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVKF 100

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 65.8 bits (160), Expect = 2e-12
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 20/157 (12%)

Query: 26  LTGRGLSSEEETKFKIDGK----VIELDESNFD-----SAISSFDYILVDFYAPWCGHCK 76
               GL ++E T  K+D +    ++ L++ NF+     S  ++     V FYAPWC HC+
Sbjct: 9   CILFGLIADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCR 68

Query: 77  RLAPQLDEAAPILAK-LKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYY-G 134
           ++AP  +     LAK LK  + +A +DA +   LA +  I  +PTL +F  G   +Y  G
Sbjct: 69  KMAPAWER----LAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGG 124

Query: 135 PRKAELLVR-----YLKKFVAPDVSILNSDAEVSDFV 166
            R  E L       + K   AP  + L+  A   DF 
Sbjct: 125 DRSTEKLAAFALGDFKKALGAPVPAPLSFFALTIDFF 161

Length = 224

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 44  KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
            VI LD ++F+SA+  S    LV+FYA WCGHC+  AP   + A  L K +  + +A VD
Sbjct: 2   PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD 61

Query: 103 --ADKYSRLASKQEIDAFPTLKIF 124
              ++   L     +  +PTL+ F
Sbjct: 62  CADEENVALCRDFGVTGYPTLRYF 85

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 58.5 bits (141), Expect = 7e-11
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 44  KVIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D   LVDF+A WCG CK +AP LDE A    + +  + +AK++
Sbjct: 4   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA---DEYQGKLTVAKLN 60

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            D+    A K  I   PTL +F +G
Sbjct: 61  IDQNPGTAPKYGIRGIPTLLLFKNG 85

Length = 109

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           DG+VI       D  +     +++DF+APWCG C+  AP  ++ A   A+    +   KV
Sbjct: 34  DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVA---AERSGKVRFVKV 90

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
           + +    L+++  I + PT+ IF +G
Sbjct: 91  NTEAERELSARFRIRSIPTIMIFKNG 116

Length = 139

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 11/137 (8%)

Query: 44  KVIELDESNFDSAI--SSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
            + ++ E+NF+  +  SS +  +LVDF+APWCG CK+L P L++ A   A+ K    +AK
Sbjct: 24  GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLA---AEYKGKFKLAK 80

Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVAPDVSILNSD 159
           V+ D    +A++  + + PT+  F  G P   + G +    L ++L K +  +     ++
Sbjct: 81  VNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPAEEEEALAE 140

Query: 160 A----EVSDFVENAGTF 172
           A    E  DF E A   
Sbjct: 141 AKELIEAEDFGEAAPLL 157

Length = 304

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 43  GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEP--IVIAK 100
             V+EL +SN+   +      +++FYAPWC  C++L P+ +E     A   +   I +AK
Sbjct: 1   SNVVELTDSNWTLVLE--GEWMIEFYAPWCPACQQLQPEWEE----FADWSDDLGINVAK 54

Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK 147
           VD  +   L+ +  + A PT+     G+   Y GPR  E L+ ++++
Sbjct: 55  VDVTQEPGLSGRFFVTALPTIYHAKDGVFRRYQGPRDKEDLISFIEE 101

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 29  RGLSSEEETKFKIDGKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAP 87
           + + SE   + + DG V  +  + F+  +   D  +L++ YAPWCGHCK L P  +E   
Sbjct: 344 KSIKSEPIPE-EQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGE 402

Query: 88  ILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYL 145
              K  + I++AK++         +    AFPT+     G   P  Y G R  E    ++
Sbjct: 403 KY-KDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFV 461

Query: 146 KKFVAPD 152
            K     
Sbjct: 462 NKHATNP 468

Length = 477

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 48.5 bits (115), Expect = 9e-08
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS---RLASKQEIDAFPT 120
           LV FYAPWC  C+ L P L E    LA L + +    VD D+     +   +  +   PT
Sbjct: 1   LVLFYAPWCPFCQALRPVLAE----LALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPT 56

Query: 121 LKIFMHGIPTEYY 133
           L +F  GI  +Y 
Sbjct: 57  LVVFGPGIGVKYG 69

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 47  ELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106
           ELD +    +      +LVDF+APWC  C+  AP L+E A    +    + +  V+ D  
Sbjct: 19  ELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELA---EEYGGDVEVVAVNVDDE 75

Query: 107 SRLASK---QEIDAFPTLKIFMHGIPTEYY 133
           +   +      + + PTL +F  G   +  
Sbjct: 76  NPDLAAEFGVAVRSIPTLLLFKDGKEVDRL 105

Length = 127

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 17/100 (17%)

Query: 62  YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------------YSR 108
            +LV F  P C +CK+L  +L +   +   LK+  V+  V+ D                 
Sbjct: 7   PVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKE 66

Query: 109 LASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYL 145
           LA K  +   PT+ +F+ G         G    E  ++ L
Sbjct: 67  LARKYGVRGTPTI-VFLDGDGKEVARLPGYLPPEEFLKLL 105

Length = 105

>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 17/153 (11%)

Query: 200 AVAKDFSEDTMVLYDFDK---------VPALVALQPSYNEHNIFY---GPFDEEFLEEFI 247
             AK+   D      FDK          P ++ L   ++E  + Y        + L++FI
Sbjct: 14  KAAKELRGDVRFGVTFDKEVAKKYGIKEPTIL-LFRKFDEKQVTYPGEDKTTFDDLKKFI 72

Query: 248 KQNFLPLSVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRELVFC 306
           ++N LPL      +    L +  + ++L I +D E  EK +  V   + A     ++ F 
Sbjct: 73  QKNSLPLVGEFTPENAEELFESGKPLLLFIKKDSEETEKLKNRV--EEVAKKFKGKINFA 130

Query: 307 YVGIKQFADFADTFEANKKSKLPKMVVWDGNEN 339
            V  K F    +       + LP +V+ D   +
Sbjct: 131 TVDGKSFGRVLEYLGL-SSADLPVIVIVDSASH 162

Length = 183

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 40  KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA 99
           ++    ++L   N +      DY  V FYA WC       P  +     L+ +   I   
Sbjct: 4   EVLNIALDLMAFNRE------DYTAVLFYASWCPFSASFRPHFN----ALSSMFPQIRHL 53

Query: 100 KVDADK-YSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLV 142
            ++       L S+  +  FPT+ +F       Y G R  + L 
Sbjct: 54  AIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTLDSLA 97

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEP-IVIAKVDADKYSRLASKQEIDAFPTL 121
           +++ F+APW   CK    Q+++    LAK   P ++   ++A++   ++ K EI A PT 
Sbjct: 17  LVLHFWAPWAEPCK----QMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTF 72

Query: 122 KIFMHG 127
            +F   
Sbjct: 73  -VFFRN 77

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID--AFPTL 121
           LV  YAPWC  C+ +    +E A  LA     + +AK  AD   +  +KQE+   +FPT+
Sbjct: 369 LVVLYAPWCPFCQAMEASYEELAEKLA--GSGVKVAKFRADGDQKEFAKQELQLGSFPTI 426

Query: 122 KIF 124
            +F
Sbjct: 427 LLF 429

Length = 457

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE--IDAFPTL 121
           LV  YAPWC  C+ +    +E A  LA     + +AK +AD   R  +K+E  + +FPT+
Sbjct: 25  LVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQREFAKEELQLKSFPTI 82

Query: 122 KIFMHGIPTEYYGP---RKAELLVRYL 145
             F          P   R  + L+ ++
Sbjct: 83  LFFPKNSRQPIKYPSEQRDVDSLLMFV 109

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF+AP     K L P L+  A    + +   V+AKV+ D   ++A +  + A PT+ 
Sbjct: 15  VVVDFWAPRSPPSKELLPLLERLA---EEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVY 71

Query: 123 IFMHGIP 129
           +F  G P
Sbjct: 72  LFAAGQP 78

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 12/68 (17%)

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           +LVDF A WC  C+ L        P +  L E  V+ +VD                P L 
Sbjct: 20  LLVDFGADWCPTCQALDRDFLS-DPRVKALAEKFVLLRVDVTTRD-----------PNLL 67

Query: 123 IFMHGIPT 130
           +   G+P 
Sbjct: 68  LDGQGVPH 75

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81

>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123
           L+   + WC  C  + P   E    L  L   + IA V+A    RLA K    + P +  
Sbjct: 28  LIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHERRLARKLGAHSVPAIVG 85

Query: 124 FMHGIPTEY 132
            ++G  T Y
Sbjct: 86  IINGQVTFY 94

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. Length = 111

>gnl|CDD|239363 cd03065, PDI_b_Calsequestrin_N, PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 42  DGK--VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDE-------AAPILAKL 92
           DGK  VI+L+E N+   +  +D + + ++ P     K    Q          AA +L   
Sbjct: 6   DGKDRVIDLNEKNYKQVLKKYDVLCLLYHEP-VESDKEAQKQFQMEELVLELAAQVLED- 63

Query: 93  KEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145
            + I    VD+ K +++A K  +D   ++ +F      EY G   A+ LV +L
Sbjct: 64  -KGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVIEYDGEFAADTLVEFL 115

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2+ release channel. In addition to its role as a calcium ion buffer, calsequestrin also regulates the activity of the RyR channel, coordinating the release of calcium ions from the SR with the loading of the calcium store. The N-terminal TRX-fold domain (or domain I) mediates front-to-front dimer interaction, an important feature in the formation of calsequestrin polymers. Length = 120

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 23/84 (27%)

Query: 61  DYILVDFYAPWCGHCKRLAPQLDEAAP-----------------------ILAKLKEPIV 97
             +L+ F+A WC  C+   P+L E                           L K+ +  +
Sbjct: 2   KVVLLYFWASWCPPCRAFTPELKELYEKLKKPKVEIVYVSLDRDEEEWKKYLKKMPKDWL 61

Query: 98  IAKVDADKYSRLASKQEIDAFPTL 121
                  + + L     + A PTL
Sbjct: 62  NVPFGDKERNELLRLYGVKAIPTL 85

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE--IDAFPTL 121
           LV  YAPWC  C+ +     E A  LA     + +AK  AD   +  +KQE  + +FPT+
Sbjct: 375 LVVLYAPWCPFCQAMEASYLELAEKLA--GSGVKVAKFRADGDQKEFAKQELQLGSFPTI 432

Query: 122 KIF 124
             F
Sbjct: 433 LFF 435

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|239304 cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 12/107 (11%)

Query: 39  FKIDGKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEP 95
           F     V++  +   D A    +  +  LV +YAPW    +    + ++ A    KL + 
Sbjct: 5   FSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVA---QKLSDQ 61

Query: 96  IVIAKVDA-DKYSRLASKQEIDAFPTLKIFMHGI---PTEYYGPRKA 138
           ++   ++      +   ++    FP   I ++     P EY GP +A
Sbjct: 62  VLFVAINCWWPQGKCRKQKHFFYFPV--IHLYYRSRGPIEYKGPMRA 106

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. Length = 113

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 62 YILVDFYAPWCGHCKRLAPQLDEAA 86
           +LV+F+A WC  C+   P+L+  A
Sbjct: 21 VVLVNFWASWCPPCRAEMPELEALA 45

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	100.0
PTZ00102	477	disulphide isomerase; Provisional	100.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	100.0
KOG4277	468	consensus Uncharacterized conserved protein, conta	100.0
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	100.0
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.97
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.91
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.89
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.89
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.88
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.87
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.87
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.87
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.86
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.86
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.85
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.84
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.84
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.84
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.83
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.83
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.82
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.82
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.81
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.81
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.81
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.81
PRK10996	139	thioredoxin 2; Provisional	99.81
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.81
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.8
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.8
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.8
PRK09381	109	trxA thioredoxin; Provisional	99.8
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.79
PHA02278	103	thioredoxin-like protein	99.79
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.78
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.77
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.77
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.76
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.75
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.74
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.73
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.73
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.73
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.72
PLN02309	457	5'-adenylylsulfate reductase	99.72
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.72
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.72
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.71
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.69
PTZ00102	477	disulphide isomerase; Provisional	99.68
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.67
PTZ00051	98	thioredoxin; Provisional	99.66
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.65
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.65
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.64
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.64
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.62
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.61
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.6
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.59
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.57
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.57
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.54
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.52
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.51
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.5
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.48
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.48
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.47
PTZ00062	204	glutaredoxin; Provisional	99.44
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.4
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.36
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.3
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.3
PHA02125	75	thioredoxin-like protein	99.27
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.26
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.26
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.24
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	99.24
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	99.24
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.23
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.22
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.21
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.2
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.16
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.15
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	99.12
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.11
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	99.09
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	99.09
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.08
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.06
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.06
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.04
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.03
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.02
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.96
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.95
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.95
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.95
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.94
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.93
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.91
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.87
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.84
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.83
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.81
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.78
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.77
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	98.75
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.74
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.68
smart00594	122	UAS UAS domain.	98.67
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.64
PTZ00056	199	glutathione peroxidase; Provisional	98.58
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.56
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.54
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.52
PLN02412	167	probable glutathione peroxidase	98.51
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.51
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.5
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.49
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.47
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.46
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.43
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.37
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.35
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.32
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.31
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	98.28
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.27
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.27
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.27
PF13728	215	TraF: F plasmid transfer operon protein	98.26
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	98.26
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.25
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.25
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.23
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.23
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.19
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.19
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.18
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.17
PRK10996	139	thioredoxin 2; Provisional	98.16
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.12
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.1
PRK09381	109	trxA thioredoxin; Provisional	98.1
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.08
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.08
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	98.06
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.05
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.03
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.02
KOG1672	211	consensus ATP binding protein [Posttranslational m	98.0
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.0
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	97.99
PTZ00256	183	glutathione peroxidase; Provisional	97.97
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.97
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	97.97
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.96
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	97.93
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	97.92
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	97.91
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.89
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	97.88
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.88
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.85
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	97.85
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.85
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	97.82
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.82
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	97.8
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.8
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	97.8
PRK11200	85	grxA glutaredoxin 1; Provisional	97.79
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.79
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	97.78
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	97.78
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	97.78
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.77
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	97.76
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.73
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.73
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	97.71
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	97.7
PTZ00051	98	thioredoxin; Provisional	97.7
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	97.69
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.68
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.67
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	97.64
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	97.63
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.63
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.63
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.62
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.61
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.6
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	97.59
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	97.58
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.58
PRK13190	202	putative peroxiredoxin; Provisional	97.58
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.57
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	97.53
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.52
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	97.52
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	97.49
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	97.48
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	97.47
KOG3425	128	consensus Uncharacterized conserved protein [Funct	97.46
cd03071	116	PDI_b'_NRX PDIb' family, NRX subgroup, redox inact	97.42
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	97.42
PRK10606	183	btuE putative glutathione peroxidase; Provisional	97.39
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.37
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.34
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.33
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	97.33
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	97.31
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.3
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.29
KOG4277	468	consensus Uncharacterized conserved protein, conta	97.29
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	97.29
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	97.27
PRK15000	200	peroxidase; Provisional	97.26
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	97.26
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	97.24
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	97.19
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.17
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	97.14
PRK13599	215	putative peroxiredoxin; Provisional	97.12
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.1
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.09
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.09
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.08
PRK13191	215	putative peroxiredoxin; Provisional	97.03
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.0
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	96.97
PRK13189	222	peroxiredoxin; Provisional	96.96
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	96.93
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.91
PHA02278	103	thioredoxin-like protein	96.89
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	96.89
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	96.84
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	96.81
PTZ00253	199	tryparedoxin peroxidase; Provisional	96.74
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.68
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	96.65
PHA03050	108	glutaredoxin; Provisional	96.63
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	96.62
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	96.59
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.57
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	96.56
PRK10329	81	glutaredoxin-like protein; Provisional	96.55
PLN02309	457	5'-adenylylsulfate reductase	96.53
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	96.48
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	96.47
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.43
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	96.42
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.33
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.33
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	96.3
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	96.27
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	96.25
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.2
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	96.16
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	96.13
KOG2640	319	consensus Thioredoxin [Function unknown]	96.02
KOG3170	240	consensus Conserved phosducin-like protein [Signal	95.84
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	95.74
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	95.73
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	95.68
KOG1672	211	consensus ATP binding protein [Posttranslational m	95.67
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	95.65
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	95.62
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	95.58
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	95.47
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	95.42
PRK10638	83	glutaredoxin 3; Provisional	95.33
PTZ00062	204	glutaredoxin; Provisional	95.31
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	95.07
PRK10824	115	glutaredoxin-4; Provisional	94.55
KOG3171	273	consensus Conserved phosducin-like protein [Signal	94.49
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	93.98
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	93.92
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	93.78
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	93.71
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	93.68
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	93.23
cd03070	91	PDI_b_ERp44 PDIb family, ERp44 subfamily, first re	92.88
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	92.87
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	92.85
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	92.78
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	92.67
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	92.56
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	92.5
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	92.36
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	92.33
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	91.55
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	90.26
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	90.01
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	89.71
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	89.17
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	88.97
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	88.89
COG3019	149	Predicted metal-binding protein [General function	88.72
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	88.69
cd02978	72	KaiB_like KaiB-like family; composed of the circad	88.53
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	87.54
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	87.52
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	87.25
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	86.43
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	86.39
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	86.37
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	86.07
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	86.07
PF13728	215	TraF: F plasmid transfer operon protein	86.02
smart00594	122	UAS UAS domain.	86.0
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	84.65
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	83.43
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	83.19
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	82.82
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	82.47
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	81.9

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-44  Score=332.46  Aligned_cols=316  Identities=29%  Similarity=0.473  Sum_probs=274.8

Q ss_pred             CCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           40 KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        40 ~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      ..+..|+.|+.+||+..|+.++.++|.||||||+||++++|+++++|+.+++.++++.+++|||+++.++|.+|+|+|||
T Consensus        22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP  101 (493)
T KOG0190|consen   22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP  101 (493)
T ss_pred             CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence            45789999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             EEEEEeCCEE-EeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCC----hhHHHHHHHHhh
Q 017971          120 TLKIFMHGIP-TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD----ESVMSNLALKYK  194 (363)
Q Consensus       120 t~~~~~~g~~-~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~a~~~~  194 (363)
                      |+.+|++|.. ..|+|+|++++|+.|++++.+|++..+.+..+++.++...+   +.+++|+.+    ...+...|..++
T Consensus       102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~---~~vig~F~d~~~~~~~~~~~a~~l~  178 (493)
T KOG0190|consen  102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKD---VVVIGFFKDLESLAESFFDAASKLR  178 (493)
T ss_pred             eEEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCc---eEEEEEecccccchHHHHHHHHhcc
Confidence            9999999995 88999999999999999999999999999999999998854   588888753    235677788888


Q ss_pred             hhhHHHHhhhcchhhhhhcCCCC--CCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCc
Q 017971          195 KKAWFAVAKDFSEDTMVLYDFDK--VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRK  272 (363)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~--~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~  272 (363)
                      +.+.|+  ++.+.++.+.++...  .+-++++++.++....|.|.++.+.|..||..+++|++.++|..+...+..+..+
T Consensus       179 ~d~~F~--~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~  256 (493)
T KOG0190|consen  179 DDYKFA--HTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVK  256 (493)
T ss_pred             ccceee--ccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccc
Confidence            888887  366788888888763  3447888887777788889999999999999999999999999888887777666


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCC-eEEEEeCC-CCeeEEEEEEee
Q 017971          273 IVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP-KMVVWDGN-ENYLTVSINVLK  349 (363)
Q Consensus       273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P-~~vi~~~~-~~y~~~~~~~~~  349 (363)
                      ..+.++.+......+.+++.+.++|+++++ ++|+++|...+++.++.||+ .....| .+++.+.+ ++|...+.+...
T Consensus       257 ~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl-~~~~~~~~~v~~~~~~~Ky~~~~e~~~~  335 (493)
T KOG0190|consen  257 LGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESFARVLEFFGL-EEEQLPIRAVILNEDGSKYPLEEEELDQ  335 (493)
T ss_pred             cceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEChHHhhHHHHhcCc-ccccCCeeEEeeccccccccCccccccH
Confidence            666666555555677899999999999998 99999999999999999999 455666 66677777 466666666888


Q ss_pred             hhhhhHhhhhhc
Q 017971          350 TRVCFFMLTLLQ  361 (363)
Q Consensus       350 ~~~~~~~~~~~~  361 (363)
                      ..|+.||..||+
T Consensus       336 ~~ie~f~~~~l~  347 (493)
T KOG0190|consen  336 ENIESFVKDFLD  347 (493)
T ss_pred             HHHHHHHHHHhc
Confidence            899999999986

>PTZ00102 disulphide isomerase; Provisional

Probab=100.00  E-value=4.4e-38  Score=304.37  Aligned_cols=299  Identities=28%  Similarity=0.420  Sum_probs=242.9

Q ss_pred             CCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      .+.+..|++++|++++++++.++|.|||+||++|+++.|+|.++++.+++...++.++.|||++++++|++|+|.++||+
T Consensus        31 ~~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~  110 (477)
T PTZ00102         31 SEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI  110 (477)
T ss_pred             CCCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence            46799999999999999899999999999999999999999999998877667899999999999999999999999999


Q ss_pred             EEEeCCEEEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCC--h---hHHHHHHHHhhhh
Q 017971          122 KIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKK  196 (363)
Q Consensus       122 ~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~--~---~~~~~~a~~~~~~  196 (363)
                      ++|++|+.+.|.|.++.+.|.+|+.+.+++++.++++..++..+.....   +.+++++.+  +   ..+.++|..+++.
T Consensus       111 ~~~~~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~f~~~a~~~~~~  187 (477)
T PTZ00102        111 KFFNKGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIF---VAFYGEYTSKDSELYKKFEEVADKHREH  187 (477)
T ss_pred             EEEECCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCc---EEEEEEeccCCcHHHHHHHHHHHhcccc
Confidence            9999998889999999999999999999999999999887766543332   456665532  2   2366677777665


Q ss_pred             hHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCcEEEE
Q 017971          197 AWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA  276 (363)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~  276 (363)
                      ..|....          + ...+.+++++... ....+.+..+.++|.+||+.+++|.+.++|.+++..+...+.+.+++
T Consensus       188 ~~F~~~~----------~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~  255 (477)
T PTZ00102        188 AKFFVKK----------H-EGKNKIYVLHKDE-EGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWF  255 (477)
T ss_pred             ceEEEEc----------C-CCCCcEEEEecCC-CCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEE
Confidence            5443211          1 1236677777643 33343344699999999999999999999999999988887766544


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchh-HHhhcCCCCCCCCCeEEEEeCCCCeeEEEE---EEeehh
Q 017971          277 IVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFAD-FADTFEANKKSKLPKMVVWDGNENYLTVSI---NVLKTR  351 (363)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~-~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~---~~~~~~  351 (363)
                      +.   ..+..+++.+.++++|+++++ +.|+|+|+.+++. .++.||+   .++|++++.+..|+|+.+..   -++.+.
T Consensus       256 ~~---~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi---~~~P~~~i~~~~~~y~~~~~~~~~~~~~~  329 (477)
T PTZ00102        256 CG---TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLI---EEFPGLAYQSPAGRYLLPPAKESFDSVEA  329 (477)
T ss_pred             ec---CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCc---ccCceEEEEcCCcccCCCccccccCCHHH
Confidence            32   334456788999999999998 9999999999886 8899999   35899999988888865543   256889


Q ss_pred             hhhHhhhhhc
Q 017971          352 VCFFMLTLLQ  361 (363)
Q Consensus       352 ~~~~~~~~~~  361 (363)
                      |..|+..+++
T Consensus       330 l~~Fv~~~~~  339 (477)
T PTZ00102        330 LIEFFKDVEA  339 (477)
T ss_pred             HHHHHHHHhC
Confidence            9999998874

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=100.00  E-value=2.7e-37  Score=297.88  Aligned_cols=311  Identities=30%  Similarity=0.482  Sum_probs=256.9

Q ss_pred             CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971           44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI  123 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  123 (363)
                      .|+.|++++|+++++++++++|.|||+||++|+++.|.|.++++.+++.+.++.|+.|||++++++|++++|.++||+++
T Consensus         2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~   81 (462)
T TIGR01130         2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI   81 (462)
T ss_pred             CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence            58899999999999999999999999999999999999999999988766779999999999999999999999999999


Q ss_pred             EeCCEE--EeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCC-h----hHHHHHHHHhhhh
Q 017971          124 FMHGIP--TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-E----SVMSNLALKYKKK  196 (363)
Q Consensus       124 ~~~g~~--~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~-~----~~~~~~a~~~~~~  196 (363)
                      |++|+.  ..|.|.++.+.|.+|+.+.+++++.++++.++++.++...+   +.+|+|+.+ .    ..+.++|..+.+.
T Consensus        82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~~~~~~~a~~~~~~  158 (462)
T TIGR01130        82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDD---VVVIGFFKDLDSELNDTFLSVAEKLRDV  158 (462)
T ss_pred             EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCC---cEEEEEECCCCcHHHHHHHHHHHHhhhc
Confidence            999876  67999999999999999999999999999999999998854   466666643 1    3577788888776


Q ss_pred             hHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCc--ccccCCC--CHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCc
Q 017971          197 AWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEH--NIFYGPF--DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRK  272 (363)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~--~~~~g~~--~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~  272 (363)
                      ..+. +...+......++.. .+.+++++......  ..|.|+.  +.++|.+||..+++|.++++|.+++..+...+ +
T Consensus       159 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~  235 (462)
T TIGR01130       159 YFFF-AHSSDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-P  235 (462)
T ss_pred             cceE-EecCCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-C
Confidence            5532 223345566677765 36677776543333  3667765  56899999999999999999999999988876 6


Q ss_pred             EEEEEEe-CCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCC-C-eeEEEEEE
Q 017971          273 IVLAIVE-DETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-N-YLTVSINV  347 (363)
Q Consensus       273 ~~i~~~~-~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~-~-y~~~~~~~  347 (363)
                      .+++++. +......+++.+.++++|+++++  +.|+++|+.+++.+++.+|+ ...++|+++|++.++ + |...+++.
T Consensus       236 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~-~~~~~P~~vi~~~~~~~~y~~~~~~~  314 (462)
T TIGR01130       236 LVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGL-KAEKFPAVAIQDLEGNKKYPMDQEEF  314 (462)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCC-CccCCceEEEEeCCcccccCCCcCCC
Confidence            5555554 33333357889999999999984  99999999999999999999 556799999999986 4 44444478


Q ss_pred             eehhhhhHhhhhhc
Q 017971          348 LKTRVCFFMLTLLQ  361 (363)
Q Consensus       348 ~~~~~~~~~~~~~~  361 (363)
                      +.+.|.+|+..+++
T Consensus       315 ~~~~i~~fi~~~~~  328 (462)
T TIGR01130       315 SSENLEAFVKDFLD  328 (462)
T ss_pred             CHHHHHHHHHHHhc
Confidence            88899999998874

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=100.00  E-value=4e-38  Score=266.44  Aligned_cols=290  Identities=23%  Similarity=0.400  Sum_probs=225.4

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      ..|.+|+++-.+.  +..+.|+|.||||||+||+++.|.|.++..+++..+.++.+|++||+..+.++.+++|+||||+.
T Consensus        28 t~VeDLddkFkdn--kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk  105 (468)
T KOG4277|consen   28 TAVEDLDDKFKDN--KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIK  105 (468)
T ss_pred             hhhhhhhHHhhhc--ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEE
Confidence            3577777653332  45579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCEEEeecCCCCHHHHHHHHHhhcCCCceecCC-hHHHHHHHHhcCCcccEEEeecCC-hhH---HHHHHHHhhhhh
Q 017971          123 IFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNS-DAEVSDFVENAGTFFPLFIGFGLD-ESV---MSNLALKYKKKA  197 (363)
Q Consensus       123 ~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~-~~~~~~~~~~~~~~~~~~v~~~~~-~~~---~~~~a~~~~~~~  197 (363)
                      +|++|..+.|+|+|+.+.|++|+.+..++-+..|++ +.++.++...++   |.++.+... .+.   +...|.......
T Consensus       106 ~~kgd~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq---~ffVf~Gtge~PL~d~fidAASe~~~~a  182 (468)
T KOG4277|consen  106 FFKGDHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQ---PFFVFFGTGEGPLFDAFIDAASEKFSVA  182 (468)
T ss_pred             EecCCeeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccC---ceEEEEeCCCCcHHHHHHHHhhhheeee
Confidence            999999999999999999999999999999999877 334555555555   677777633 333   333343333333


Q ss_pred             HHHHhhhcchhhhhhcC-CCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCcEEEE
Q 017971          198 WFAVAKDFSEDTMVLYD-FDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA  276 (363)
Q Consensus       198 ~~~~~~~~~~~~~~~~~-~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~  276 (363)
                      +|.   +.+++++..++ .+..|.+.+|++   +......+.+.++|.+||+..++|.+-..+..++..+..+++-+++.
T Consensus       183 ~Ff---SaseeVaPe~~~~kempaV~VFKD---etf~i~de~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLa  256 (468)
T KOG4277|consen  183 RFF---SASEEVAPEENDAKEMPAVAVFKD---ETFEIEDEGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALA  256 (468)
T ss_pred             eee---ccccccCCcccchhhccceEEEcc---ceeEEEecCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEE
Confidence            333   33455555443 344699999986   32333344578899999999999999999999999999999888887


Q ss_pred             EEeCC----ChhhHHHHHHHHHHHHHhCCC-------cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC-CCeeEEE
Q 017971          277 IVEDE----TEEKSQKLVTTLKAAASANRE-------LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENYLTVS  344 (363)
Q Consensus       277 ~~~~~----~~~~~~~~~~~l~~~a~~~~~-------~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~-~~y~~~~  344 (363)
                      +.+..    ++....++.++.+++|+.+++       ++|+|+|+.+   +.+++-+ ..-..|.++|+|.. .+||...
T Consensus       257 VidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD---~~nqilM-~als~P~l~i~NtsnqeYfLse  332 (468)
T KOG4277|consen  257 VIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGND---LANQILM-AALSEPHLFIFNTSNQEYFLSE  332 (468)
T ss_pred             EeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhH---HHHHHHH-HhhcCCeEEEEecCchheeecc
Confidence            76542    556678899999999987543       9999999987   4455545 34557999999997 5788855


Q ss_pred             EEE
Q 017971          345 INV  347 (363)
Q Consensus       345 ~~~  347 (363)
                      .+-
T Consensus       333 ~d~  335 (468)
T KOG4277|consen  333 DDP  335 (468)
T ss_pred             CCh
Confidence            443

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=100.00  E-value=5e-35  Score=248.02  Aligned_cols=303  Identities=21%  Similarity=0.347  Sum_probs=244.1

Q ss_pred             cChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCC--CCeEEEEEeCccchhhhhhCCcCcCCEEEEEe
Q 017971           48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK--EPIVIAKVDADKYSRLASKQEIDAFPTLKIFM  125 (363)
Q Consensus        48 l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~--~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  125 (363)
                      ++..|++.+++.++.++|.|||+||+.++.+.|.|+++|..+++..  .++.+|+|||+++..++.+|.|..|||+.+|+
T Consensus         1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            4568899999999999999999999999999999999999988664  47999999999999999999999999999999


Q ss_pred             CCEEE--eecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCC--h---hHHHHHHHHhhhhhH
Q 017971          126 HGIPT--EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAW  198 (363)
Q Consensus       126 ~g~~~--~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~--~---~~~~~~a~~~~~~~~  198 (363)
                      +|...  +|+|.|+.+.+.+||++.+..++.++.+..++++.-.-..   ..+|+++..  +   ..++++|..+++.+.
T Consensus        81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K---~~vIgyF~~kdspey~~~~kva~~lr~dc~  157 (375)
T KOG0912|consen   81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSK---RTVIGYFPSKDSPEYDNLRKVASLLRDDCV  157 (375)
T ss_pred             ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhcccc---ceEEEEeccCCCchHHHHHHHHHHHhhccE
Confidence            99865  5999999999999999999999999877666655544232   477888752  2   458888999999887


Q ss_pred             HHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCc-ccccCCC-CHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCcEEEE
Q 017971          199 FAVAKDFSEDTMVLYDFDKVPALVALQPSYNEH-NIFYGPF-DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA  276 (363)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~-~~~~g~~-~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~  276 (363)
                      |.+...  + +.......+.+ +++++++...+ ..|.|.+ +.+.+..||.+.+.|+++|+|-+|.+.+...+.|.+|+
T Consensus       158 f~V~~g--D-~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflIL  233 (375)
T KOG0912|consen  158 FLVGFG--D-LLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLIL  233 (375)
T ss_pred             EEeecc--c-cccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEE
Confidence            765421  1 11111112222 67777754433 3689988 79999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEee--hhhh
Q 017971          277 IVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLK--TRVC  353 (363)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~--~~~~  353 (363)
                      |...++.+..+.+...+++-...-+. +.|...||..+..-|..+|. +.+++|.+.|-+-...|--++++..-  -.+.
T Consensus       234 f~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgK-s~~DLPviaIDsF~Hmylfp~f~di~~pGkLk  312 (375)
T KOG0912|consen  234 FRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGK-SPDDLPVIAIDSFRHMYLFPDFNDINIPGKLK  312 (375)
T ss_pred             EecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCC-CcccCcEEEeeccceeeecCchhhhcCccHHH
Confidence            99887777778888877765555555 99999999999999999999 68999998887766666666554332  2566


Q ss_pred             hHhhh
Q 017971          354 FFMLT  358 (363)
Q Consensus       354 ~~~~~  358 (363)
                      +|+.-
T Consensus       313 qFv~D  317 (375)
T KOG0912|consen  313 QFVAD  317 (375)
T ss_pred             HHHHH
Confidence            66654

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.97  E-value=3.1e-29  Score=217.37  Aligned_cols=300  Identities=23%  Similarity=0.324  Sum_probs=214.5

Q ss_pred             hhccCCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHH------H-HHHHHHHHhhcCCCCeE
Q 017971           25 LLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLA------P-QLDEAAPILAKLKEPIV   97 (363)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~------~-~~~~~a~~~~~~~~~v~   97 (363)
                      +....++..|   .++-..+|++||++||.+++++.+..+|+||.|--+ .+...      . .++-+|+.+...  .+.
T Consensus        19 ~~aeegLefP---~YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~--gig   92 (383)
T PF01216_consen   19 CRAEEGLEFP---EYDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDK--GIG   92 (383)
T ss_dssp             -------SSS---S-SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGC--TEE
T ss_pred             cchhhccCCc---cCCCccceEEcchhHHHHHHHhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhcccc--Ccc
Confidence            3444555555   377788999999999999999999999999998732 22221      2 344456666544  599


Q ss_pred             EEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEE
Q 017971           98 IAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFI  177 (363)
Q Consensus        98 ~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v  177 (363)
                      ||.||..++..+++++|+...+++++|++|+.++|.|.++++.+++|+...+..+|..|++..+++.|-.-.+.  +.+|
T Consensus        93 fg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~--~klI  170 (383)
T PF01216_consen   93 FGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDD--IKLI  170 (383)
T ss_dssp             EEEEETTTTHHHHHHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS---EEE
T ss_pred             eEEeccHHHHHHHHhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccc--eeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999888875543  7899


Q ss_pred             eecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCC-CCHHHHHHHHHhhc
Q 017971          178 GFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNF  251 (363)
Q Consensus       178 ~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~-~~~~~l~~fi~~~~  251 (363)
                      ||+++.     ..+..+|..|...+.|..  +.++.+++.++++ ...+-+|++..+.+....|+ .+.++|.+||+.|.
T Consensus       171 GyFk~~~s~~yk~FeeAAe~F~p~IkFfA--tfd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~  247 (383)
T PF01216_consen  171 GYFKSEDSEHYKEFEEAAEHFQPYIKFFA--TFDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHK  247 (383)
T ss_dssp             EE-SSTTSHHHHHHHHHHHHCTTTSEEEE--E-SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-
T ss_pred             EEeCCCCcHHHHHHHHHHHhhcCceeEEE--EecchhhhhcCcc-ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhc
Confidence            988653     247778889988776654  5678999999997 77888899988888888764 58999999999999


Q ss_pred             CCCcccCChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchh----HHhhcCCC
Q 017971          252 LPLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFAD----FADTFEAN  323 (363)
Q Consensus       252 ~p~~~~lt~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~----~~~~~gi~  323 (363)
                      -|.+++++.+++.... ..-....|+.|.+..++...++..+|+++|+.+.+   +.++|+|.+++|-    +-+.|||+
T Consensus       248 rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Id  327 (383)
T PF01216_consen  248 RPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGID  327 (383)
T ss_dssp             S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-
T ss_pred             hhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcc
Confidence            9999999998876644 33355777777788888889999999999998765   9999999999854    66889993


Q ss_pred             CCCCCCeEEEEeCC
Q 017971          324 KKSKLPKMVVWDGN  337 (363)
Q Consensus       324 ~~~~~P~~vi~~~~  337 (363)
                        -..|.+.+.|.+
T Consensus       328 --l~~PqIGvVnvt  339 (383)
T PF01216_consen  328 --LSRPQIGVVNVT  339 (383)
T ss_dssp             --TTS-EEEEEETT
T ss_pred             --ccCCceeEEecc
Confidence              335999999986

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.91  E-value=4.5e-24  Score=163.19  Aligned_cols=104  Identities=19%  Similarity=0.430  Sum_probs=94.5

Q ss_pred             cCCCCCeEEcChhhHHHh---HcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhh-hhCC
Q 017971           39 FKIDGKVIELDESNFDSA---ISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA-SKQE  114 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~---l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~-~~~~  114 (363)
                      +..++.|++|+++||+++   ++++++++|.||||||++|+.+.|.|+++|+.+++.   +.|++|||++++++| ++|+
T Consensus         5 ~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~~l~~~~~~   81 (113)
T cd03006           5 FSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQGKCRKQKH   81 (113)
T ss_pred             cCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCChHHHHHhcC
Confidence            445788999999999987   588899999999999999999999999999998653   999999999999999 5899


Q ss_pred             cCcCCEEEEEeCCE-EEeecCCCCHHHHHHHH
Q 017971          115 IDAFPTLKIFMHGI-PTEYYGPRKAELLVRYL  145 (363)
Q Consensus       115 i~~~Pt~~~~~~g~-~~~y~g~~~~~~i~~~i  145 (363)
                      |.++||+++|++|+ +..|.|.++.+.|+.|+
T Consensus        82 I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          82 FFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             CcccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence            99999999999886 56799999999999884

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.89  E-value=5.3e-23  Score=155.89  Aligned_cols=99  Identities=34%  Similarity=0.683  Sum_probs=91.8

Q ss_pred             CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971           44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI  123 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  123 (363)
                      ++++|+.++|++.++++++++|.||++||++|+++.|.|+++++.+++   .+.|+.|||++++.+|++++|.++||+++
T Consensus         2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   78 (101)
T cd03003           2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGDDRMLCRSQGVNSYPSLYV   78 (101)
T ss_pred             CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence            688999999999998889999999999999999999999999998865   39999999999999999999999999999


Q ss_pred             EeCCEEE-eecCCCCHHHHHHHH
Q 017971          124 FMHGIPT-EYYGPRKAELLVRYL  145 (363)
Q Consensus       124 ~~~g~~~-~y~g~~~~~~i~~~i  145 (363)
                      |++|+.. .|.|.++.+.|.+|+
T Consensus        79 ~~~g~~~~~~~G~~~~~~l~~f~  101 (101)
T cd03003          79 FPSGMNPEKYYGDRSKESLVKFA  101 (101)
T ss_pred             EcCCCCcccCCCCCCHHHHHhhC
Confidence            9999754 599999999999874

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.89  E-value=1.4e-22  Score=155.44  Aligned_cols=103  Identities=36%  Similarity=0.671  Sum_probs=93.5

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCC---CCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK---EPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~---~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      ++|+++++++|++.++.+++++|.||||||++|+++.|.|+++++.+++..   ..+.++.|||++++++|++|+|.++|
T Consensus         1 ~~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P   80 (108)
T cd02996           1 SEIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP   80 (108)
T ss_pred             CceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence            468999999999999888999999999999999999999999998876432   25999999999999999999999999


Q ss_pred             EEEEEeCCEE--EeecCCCCHHHHHHHH
Q 017971          120 TLKIFMHGIP--TEYYGPRKAELLVRYL  145 (363)
Q Consensus       120 t~~~~~~g~~--~~y~g~~~~~~i~~~i  145 (363)
                      |+++|++|+.  ..|.|.++.+.|.+|+
T Consensus        81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          81 TLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            9999999973  5699999999999985

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.88  E-value=2.2e-22  Score=152.73  Aligned_cols=98  Identities=29%  Similarity=0.498  Sum_probs=88.9

Q ss_pred             CeEEcChhhHHHhHcCCCeEEEEEEC--CCCh---hhhhHHHHHHHHHHHhhcCCCCeEEEEEeC-----ccchhhhhhC
Q 017971           44 KVIELDESNFDSAISSFDYILVDFYA--PWCG---HCKRLAPQLDEAAPILAKLKEPIVIAKVDA-----DKYSRLASKQ  113 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~lv~fy~--~~C~---~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-----~~~~~l~~~~  113 (363)
                      .+++|+++||++++++++.+||.|||  |||+   ||++++|++.+++..       +.+++|||     +++.+||++|
T Consensus         2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-------v~lakVd~~d~~~~~~~~L~~~y   74 (116)
T cd03007           2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-------LLVAEVGIKDYGEKLNMELGERY   74 (116)
T ss_pred             CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-------eEEEEEecccccchhhHHHHHHh
Confidence            57899999999999999999999999  9999   999999888887642       88999999     5688999999


Q ss_pred             CcC--cCCEEEEEeCCE---EEeecCC-CCHHHHHHHHHhh
Q 017971          114 EID--AFPTLKIFMHGI---PTEYYGP-RKAELLVRYLKKF  148 (363)
Q Consensus       114 ~i~--~~Pt~~~~~~g~---~~~y~g~-~~~~~i~~~i~~~  148 (363)
                      +|.  +||||++|++|.   ++.|.|. |+.+.|++|+.++
T Consensus        75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            999  999999999884   5789997 9999999999876

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.87  E-value=1.7e-21  Score=148.15  Aligned_cols=101  Identities=37%  Similarity=0.679  Sum_probs=94.8

Q ss_pred             eEEcChhhHHHhHcC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971           45 VIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI  123 (363)
Q Consensus        45 v~~l~~~~f~~~l~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  123 (363)
                      |..+++++|++.+.+ +++++|.||++||++|+.+.|.|.++++.+.+   ++.|+.|||++++.+|++|+|.++|++++
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   77 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENKELCKKYGVKSVPTIIF   77 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccchhhhccCCCCCCEEEE
Confidence            578999999999976 89999999999999999999999999998875   59999999999999999999999999999


Q ss_pred             EeCCEEE-eecCCCCHHHHHHHHHhh
Q 017971          124 FMHGIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       124 ~~~g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                      |++|+.. .|.|.++.+.|.+|++++
T Consensus        78 ~~~g~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   78 FKNGKEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred             EECCcEEEEEECCCCHHHHHHHHHcC
Confidence            9999876 699999999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.87  E-value=1.7e-21  Score=147.68  Aligned_cols=101  Identities=32%  Similarity=0.611  Sum_probs=91.1

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      +.|++|++++|++.+++  .++|.|||+||++|+++.|.|+++++.+++  ..+.++.+||++++.+|++|+|.++||++
T Consensus         1 ~~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~   76 (101)
T cd02994           1 SNVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQEPGLSGRFFVTALPTIY   76 (101)
T ss_pred             CceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence            36899999999998854  389999999999999999999999987643  35999999999999999999999999999


Q ss_pred             EEeCCEEEeecCCCCHHHHHHHHHh
Q 017971          123 IFMHGIPTEYYGPRKAELLVRYLKK  147 (363)
Q Consensus       123 ~~~~g~~~~y~g~~~~~~i~~~i~~  147 (363)
                      +|++|+...|.|.++.++|.+|+++
T Consensus        77 ~~~~g~~~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          77 HAKDGVFRRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             EeCCCCEEEecCCCCHHHHHHHHhC
Confidence            9999987779999999999999864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.87  E-value=1.6e-21  Score=148.67  Aligned_cols=99  Identities=33%  Similarity=0.692  Sum_probs=89.1

Q ss_pred             CeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .+++++.++|++.+ +.+++++|.||++||++|+++.|.|+++++.+.+   .+.|+.+||++++++|++++|+++||++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~   78 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQKYESLCQQANIRAYPTIR   78 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCchHHHHHHcCCCcccEEE
Confidence            57899999999987 5567999999999999999999999999998754   3999999999999999999999999999


Q ss_pred             EEeCC-E-EEeecCCCC-HHHHHHHH
Q 017971          123 IFMHG-I-PTEYYGPRK-AELLVRYL  145 (363)
Q Consensus       123 ~~~~g-~-~~~y~g~~~-~~~i~~~i  145 (363)
                      +|++| + ...|.|..+ .++|.+|+
T Consensus        79 ~~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          79 LYPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EEcCCCCCceEccCCCCCHHHHHhhC
Confidence            99987 4 446999987 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.86  E-value=3e-21  Score=148.49  Aligned_cols=110  Identities=22%  Similarity=0.313  Sum_probs=94.0

Q ss_pred             cCCCCCeEEcChhhHHHhHcCC-CeEEEEEECCCChh--hh--hHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC
Q 017971           39 FKIDGKVIELDESNFDSAISSF-DYILVDFYAPWCGH--CK--RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ  113 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~~-~~~lv~fy~~~C~~--C~--~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~  113 (363)
                      ++-...|+.||++||++.+.++ .++++.||++||++  |+  +.+|.+.++|.++-. ..++.|++|||++++++|++|
T Consensus         5 ~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~-~~~v~~~kVD~d~~~~La~~~   83 (120)
T cd03065           5 YDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE-DKGIGFGLVDSKKDAKVAKKL   83 (120)
T ss_pred             cCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh-cCCCEEEEEeCCCCHHHHHHc
Confidence            4556789999999999988555 47788888888865  99  778888888776621 124999999999999999999


Q ss_pred             CcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhc
Q 017971          114 EIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       114 ~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~  149 (363)
                      +|.++||+++|++|+.+.|.|.++.+.|++|+.+..
T Consensus        84 ~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          84 GLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             CCccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence            999999999999999888999999999999998764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.86  E-value=8e-21  Score=162.17  Aligned_cols=106  Identities=30%  Similarity=0.574  Sum_probs=96.3

Q ss_pred             CCCeEEcChhhHHHhHcC-----CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC
Q 017971           42 DGKVIELDESNFDSAISS-----FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID  116 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~-----~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~  116 (363)
                      ++.++++++++|++.+..     +++++|.||+|||++|+++.|.|+++++.+++   .+.++.+||++++++|++|+|.
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~~~~~~l~~~~~I~  105 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDATRALNLAKRFAIK  105 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecCcccHHHHHHcCCC
Confidence            467999999999998843     47999999999999999999999999998865   3999999999999999999999


Q ss_pred             cCCEEEEEeCCEEEee-cCCCCHHHHHHHHHhhcC
Q 017971          117 AFPTLKIFMHGIPTEY-YGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       117 ~~Pt~~~~~~g~~~~y-~g~~~~~~i~~~i~~~~~  150 (363)
                      ++||+++|++|+.+.| .|.++.++|.+|+.+...
T Consensus       106 ~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        106 GYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             cCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence            9999999999998876 578999999999988764

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.2e-20  Score=174.94  Aligned_cols=205  Identities=30%  Similarity=0.469  Sum_probs=155.2

Q ss_pred             CeEEcCh-hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIELDE-SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l~~-~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      ....+.. ..+...+...++++|.||+|||+||+++.|+|.++++.+++   .+.++.|||+++.++|++|+|.++||+.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~~~~~~~~~~y~i~gfPtl~  106 (383)
T KOG0191|consen   30 VVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDCDEHKDLCEKYGIQGFPTLK  106 (383)
T ss_pred             chhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCchhhHHHHHhcCCccCcEEE
Confidence            3334444 44444558889999999999999999999999999999987   4999999999999999999999999999


Q ss_pred             EEeCC-EEEeecCCCCHHHHHHHHHhhcCCCceecCCh-------HHHHHHHHhcCCcccEEEeecCC-h-------hHH
Q 017971          123 IFMHG-IPTEYYGPRKAELLVRYLKKFVAPDVSILNSD-------AEVSDFVENAGTFFPLFIGFGLD-E-------SVM  186 (363)
Q Consensus       123 ~~~~g-~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~-------~~~~~~~~~~~~~~~~~v~~~~~-~-------~~~  186 (363)
                      +|.+| .++.|.|.++.+.+.+|+.+.+.+.+......       .++.......+.  .+++.|+.. .       +.+
T Consensus       107 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~--~~lv~f~aPwc~~ck~l~~~~  184 (383)
T KOG0191|consen  107 VFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDA--DWLVEFYAPWCGHCKKLAPEW  184 (383)
T ss_pred             EEcCCCceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCc--ceEEEEeccccHHhhhcChHH
Confidence            99999 67789999999999999999887554433222       345555544543  467666533 2       346


Q ss_pred             HHHHHHhhhhhHHHHh---hhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCC
Q 017971          187 SNLALKYKKKAWFAVA---KDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP  253 (363)
Q Consensus       187 ~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p  253 (363)
                      .+++..+.....+.++   .+....+...+++..+|++++|+++......|.+..+.+.|..|+++...+
T Consensus       185 ~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~  254 (383)
T KOG0191|consen  185 EKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR  254 (383)
T ss_pred             HHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence            6666655432212111   123567888999999999999988655356667888999999999998665

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.84  E-value=4.9e-20  Score=155.46  Aligned_cols=170  Identities=22%  Similarity=0.401  Sum_probs=147.3

Q ss_pred             hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCC-CCHHHHHHHHHhhcCCCcccCChhh
Q 017971          184 SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNFLPLSVPINQDT  262 (363)
Q Consensus       184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~-~~~~~l~~fi~~~~~p~~~~lt~~~  262 (363)
                      ..+.++|..+++.+.|+.  ..++++++.++++. |++++|++.++.+..|.|. ++.++|.+||..+++|++.++|.++
T Consensus        10 ~~f~~~A~~~~~~~~F~~--~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n   86 (184)
T PF13848_consen   10 EIFEEAAEKLKGDYQFGV--TFNEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTPEN   86 (184)
T ss_dssp             HHHHHHHHHHTTTSEEEE--EE-HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTH
T ss_pred             HHHHHHHHhCcCCcEEEE--EcHHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccchhh
Confidence            458888999998876665  44688899999998 9999999977788999998 8999999999999999999999999


Q ss_pred             HHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC-CCe
Q 017971          263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENY  340 (363)
Q Consensus       263 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~-~~y  340 (363)
                      +..+...+.+.+++++.+.+.+..+.+.+.++.+|+++++ +.|+|+|+..+++.++.||+ +..++|.++|++.+ ++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i-~~~~~P~~vi~~~~~~~~  165 (184)
T PF13848_consen   87 FEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI-DEDDLPALVIFDSNKGKY  165 (184)
T ss_dssp             HHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT-TTSSSSEEEEEETTTSEE
T ss_pred             HHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC-CCccCCEEEEEECCCCcE
Confidence            9999999988666666666788889999999999999999 99999999999999999999 67899999999965 443


Q ss_pred             -eEEEEEEeehhhhhHhh
Q 017971          341 -LTVSINVLKTRVCFFML  357 (363)
Q Consensus       341 -~~~~~~~~~~~~~~~~~  357 (363)
                       |.++++++.+.|..|+.
T Consensus       166 ~~~~~~~~~~~~i~~Fl~  183 (184)
T PF13848_consen  166 YYLPEGEITPESIEKFLN  183 (184)
T ss_dssp             EE--SSCGCHHHHHHHHH
T ss_pred             EcCCCCCCCHHHHHHHhc
Confidence             45688999999999985

...

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.84  E-value=3.4e-20  Score=140.79  Aligned_cols=100  Identities=39%  Similarity=0.725  Sum_probs=90.6

Q ss_pred             eEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971           45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        45 v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      ++++++++|++.+..+ +++|.||++||++|+.+.|.|+++++.+++....+.++.+||++++.+|++|+|.++||+++|
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   80 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF   80 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence            6889999999999765 599999999999999999999999999876334699999999999999999999999999999


Q ss_pred             eCCEEE-eecCCCCHHHHHHHH
Q 017971          125 MHGIPT-EYYGPRKAELLVRYL  145 (363)
Q Consensus       125 ~~g~~~-~y~g~~~~~~i~~~i  145 (363)
                      ++|... .|.|.++.+.|.+|+
T Consensus        81 ~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          81 KDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             eCCCeeeEeeCCCCHHHHHhhC
Confidence            998754 699999999998885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.84  E-value=2.6e-20  Score=143.18  Aligned_cols=99  Identities=40%  Similarity=0.728  Sum_probs=89.2

Q ss_pred             CeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCCE
Q 017971           44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPT  120 (363)
Q Consensus        44 ~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt  120 (363)
                      .|++|++++|++.+ +.+++++|.||++||++|+++.|.|+++++.+.+   .+.++.+||++  ++++|++|+|.++|+
T Consensus         1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~~~~~~~~~~~~i~~~Pt   77 (109)
T cd03002           1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDEDKNKPLCGKYGVQGFPT   77 (109)
T ss_pred             CeEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCccccHHHHHHcCCCcCCE
Confidence            37899999999988 4456799999999999999999999999998764   38999999999  899999999999999


Q ss_pred             EEEEeCCE------EEeecCCCCHHHHHHHH
Q 017971          121 LKIFMHGI------PTEYYGPRKAELLVRYL  145 (363)
Q Consensus       121 ~~~~~~g~------~~~y~g~~~~~~i~~~i  145 (363)
                      +++|.+|.      ...|.|.++.+.|.+|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             EEEEeCCCcccccccccccCccCHHHHHHHh
Confidence            99999885      34699999999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.83  E-value=9.2e-20  Score=138.63  Aligned_cols=99  Identities=44%  Similarity=0.780  Sum_probs=89.6

Q ss_pred             CeEEcChhhHHHhHcC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .|.++++++|++.+.+ +++++|.||++||++|+++.|.|.++++.+.+   .+.++.+||++++++|++|+|.++|+++
T Consensus         1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~~~~~~~~~~~~i~~~P~~~   77 (103)
T cd03001           1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDADVHQSLAQQYGVRGFPTIK   77 (103)
T ss_pred             CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEECcchHHHHHHCCCCccCEEE
Confidence            3688999999998844 45699999999999999999999999988764   3999999999999999999999999999


Q ss_pred             EEeCC--EEEeecCCCCHHHHHHHH
Q 017971          123 IFMHG--IPTEYYGPRKAELLVRYL  145 (363)
Q Consensus       123 ~~~~g--~~~~y~g~~~~~~i~~~i  145 (363)
                      +|.+|  ....|.|.++.+.|.+|+
T Consensus        78 ~~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          78 VFGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             EECCCCcceeecCCCCCHHHHHHHh
Confidence            99988  456799999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=6.2e-20  Score=142.73  Aligned_cols=105  Identities=36%  Similarity=0.553  Sum_probs=96.1

Q ss_pred             CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      ..+-.++..+|++.+ ++..|++|.|||+||++|+.+.|.+++++.++++.   +.++++|.+++.+++.+|+|..+||+
T Consensus        43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~ela~~Y~I~avPtv  119 (150)
T KOG0910|consen   43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHPELAEDYEISAVPTV  119 (150)
T ss_pred             ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccccchHhhcceeeeeEE
Confidence            356677889999866 88899999999999999999999999999998665   99999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecCCCCHHHHHHHHHhhcC
Q 017971          122 KIFMHGIPTE-YYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~  150 (363)
                      ++|++|+..+ .-|..+.+.|.+||.+.+.
T Consensus       120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            9999999884 8999999999999998754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=8e-20  Score=157.18  Aligned_cols=106  Identities=31%  Similarity=0.622  Sum_probs=99.1

Q ss_pred             CCeEEcChhhHHHhH---cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           43 GKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l---~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      ..|+++|+.||++.+   ....|++|.||+|||++|+.+.|.+++++..+++.   +.+++|||++++.++..|||+++|
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p~vAaqfgiqsIP   99 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEPMVAAQFGVQSIP   99 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcchhHHHHhCcCcCC
Confidence            449999999999977   33359999999999999999999999999988775   999999999999999999999999


Q ss_pred             EEEEEeCCEEEe-ecCCCCHHHHHHHHHhhcCC
Q 017971          120 TLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       120 t~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~  151 (363)
                      +++.|++|.++. |.|....+.|.+|+.+..+.
T Consensus       100 tV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         100 TVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             eEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence            999999999997 99999999999999999987

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.82  E-value=1.7e-19  Score=136.79  Aligned_cols=100  Identities=45%  Similarity=0.777  Sum_probs=92.0

Q ss_pred             cChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971           48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG  127 (363)
Q Consensus        48 l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  127 (363)
                      |++++|++.+.++++++|.||++||++|+++.|.|+++++.+++. ..+.++.+||++++.+|++|+|.++|++++|.+|
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            578999999988899999999999999999999999999988653 2599999999999999999999999999999987


Q ss_pred             E-EEeecCCCCHHHHHHHHHhh
Q 017971          128 I-PTEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       128 ~-~~~y~g~~~~~~i~~~i~~~  148 (363)
                      + .+.|.|.++.+.|.+|+.++
T Consensus        80 ~~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        80 KKPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             CcceeecCCCCHHHHHHHHHhc
Confidence            6 67899999999999999875

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.81  E-value=2.6e-19  Score=137.73  Aligned_cols=100  Identities=25%  Similarity=0.352  Sum_probs=88.8

Q ss_pred             EEcChhhHHHhH---cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           46 IELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        46 ~~l~~~~f~~~l---~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      ..++.++|++.+   +.+++++|.||+|||++|+.+.|.|+++++.+.+.  ++.++.|||++++.++++++|.++||++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~   84 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHERRLARKLGAHSVPAIV   84 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccHHHHHHcCCccCCEEE
Confidence            456788898644   36789999999999999999999999999998653  4999999999999999999999999999


Q ss_pred             EEeCCEEEe-ecCCCCHHHHHHHHHh
Q 017971          123 IFMHGIPTE-YYGPRKAELLVRYLKK  147 (363)
Q Consensus       123 ~~~~g~~~~-y~g~~~~~~i~~~i~~  147 (363)
                      +|++|+... +.|..+.+.|.+|+++
T Consensus        85 i~~~g~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          85 GIINGQVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             EEECCEEEEEecCCCCHHHHHHHHhc
Confidence            999998765 5899999999999976

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.81  E-value=2.6e-19  Score=136.32  Aligned_cols=101  Identities=37%  Similarity=0.771  Sum_probs=89.2

Q ss_pred             EEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe
Q 017971           46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM  125 (363)
Q Consensus        46 ~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  125 (363)
                      ++++ ++|++. .++++++|.||++||++|++..|.|+++++.+++.+..+.++.+||++++++|++|+|.++||+++|+
T Consensus         3 ~~~~-~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~   80 (104)
T cd03000           3 LDLD-DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLK   80 (104)
T ss_pred             eech-hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEc
Confidence            4444 678875 45689999999999999999999999999998654556999999999999999999999999999998


Q ss_pred             CCEEEeecCCCCHHHHHHHHHhh
Q 017971          126 HGIPTEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       126 ~g~~~~y~g~~~~~~i~~~i~~~  148 (363)
                      +|....|.|.++.+.|.+|+++.
T Consensus        81 ~~~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          81 GDLAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             CCCceeecCCCCHHHHHHHHHhh
Confidence            88777799999999999999864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.81  E-value=2.8e-19  Score=137.23  Aligned_cols=100  Identities=27%  Similarity=0.546  Sum_probs=87.8

Q ss_pred             CeEEcChhhHHHhH---cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-chhhhhh-CCcCcC
Q 017971           44 KVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASK-QEIDAF  118 (363)
Q Consensus        44 ~v~~l~~~~f~~~l---~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~~l~~~-~~i~~~  118 (363)
                      .|++++.++|++.+   +++++++|.||++||++|+++.|.|.++++.+++  .++.++.|||+. +..+|++ ++++++
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~d~~~~~~~~~~~~v~~~   79 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNADGEQREFAKEELQLKSF   79 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEECCccchhhHHhhcCCCcC
Confidence            58899999999987   3568999999999999999999999999998864  349999999998 5788874 999999


Q ss_pred             CEEEEEeCCE--EEeecCC-CCHHHHHHHH
Q 017971          119 PTLKIFMHGI--PTEYYGP-RKAELLVRYL  145 (363)
Q Consensus       119 Pt~~~~~~g~--~~~y~g~-~~~~~i~~~i  145 (363)
                      ||+++|.+|.  .+.|.|. ++.+.|++|+
T Consensus        80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            9999998763  5679995 8999999985

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.81  E-value=5.5e-19  Score=141.92  Aligned_cols=92  Identities=17%  Similarity=0.354  Sum_probs=81.1

Q ss_pred             CCCCeEEcChhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc-
Q 017971           41 IDGKVIELDESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA-  117 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~-  117 (363)
                      ....+.++++++|++.+.  .+++++|.||++||++|+.+.|.|+++++.+.+  .++.|++|||+++++++++|+|.+ 
T Consensus        26 ~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDvd~~~~la~~~~V~~~  103 (152)
T cd02962          26 GPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDIGRFPNVAEKFRVSTS  103 (152)
T ss_pred             CCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEECCCCHHHHHHcCceec
Confidence            457899999999999883  346999999999999999999999999988753  249999999999999999999988 


Q ss_pred             -----CCEEEEEeCCEEEe-ecC
Q 017971          118 -----FPTLKIFMHGIPTE-YYG  134 (363)
Q Consensus       118 -----~Pt~~~~~~g~~~~-y~g  134 (363)
                           +||+++|++|+.+. +.|
T Consensus       104 ~~v~~~PT~ilf~~Gk~v~r~~G  126 (152)
T cd02962         104 PLSKQLPTIILFQGGKEVARRPY  126 (152)
T ss_pred             CCcCCCCEEEEEECCEEEEEEec
Confidence                 99999999998774 444

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PRK10996 thioredoxin 2; Provisional

Probab=99.81  E-value=1.2e-18  Score=139.37  Aligned_cols=106  Identities=25%  Similarity=0.532  Sum_probs=97.0

Q ss_pred             CCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           40 KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        40 ~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      ..++.++++++++|+++++++++++|.||++||++|+.+.|.+.++++.+.+   ++.++.+|++++++++++|+|.++|
T Consensus        32 ~~~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~~~l~~~~~V~~~P  108 (139)
T PRK10996         32 LFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEAERELSARFRIRSIP  108 (139)
T ss_pred             cCCCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCCCHHHHHhcCCCccC
Confidence            3466788999999999998899999999999999999999999999987654   4999999999999999999999999


Q ss_pred             EEEEEeCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971          120 TLKIFMHGIPTE-YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       120 t~~~~~~g~~~~-y~g~~~~~~i~~~i~~~  148 (363)
                      ++++|++|+.+. +.|..+.+.|.+|+.+.
T Consensus       109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence            999999998775 79999999999999875

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.81  E-value=4.5e-19  Score=135.07  Aligned_cols=101  Identities=36%  Similarity=0.695  Sum_probs=91.5

Q ss_pred             CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCCEE
Q 017971           44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTL  121 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~  121 (363)
                      .++.+++.+|++.++++++++|.||++||++|+++.|.+.++++.+.+ ...+.++.+||+.  ++.+|++++|+++|++
T Consensus         1 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~   79 (104)
T cd02997           1 DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDCTKPEHDALKEEYNVKGFPTF   79 (104)
T ss_pred             CeEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence            368899999999998889999999999999999999999999988864 2358999999998  9999999999999999


Q ss_pred             EEEeCCEE-EeecCCCCHHHHHHHH
Q 017971          122 KIFMHGIP-TEYYGPRKAELLVRYL  145 (363)
Q Consensus       122 ~~~~~g~~-~~y~g~~~~~~i~~~i  145 (363)
                      ++|++|+. ..|.|..+.+.+.+|+
T Consensus        80 ~~~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          80 KYFENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEEeCCCeeEEeCCCCCHHHHHhhC
Confidence            99999874 4699999999999885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.7e-19  Score=166.66  Aligned_cols=214  Identities=20%  Similarity=0.351  Sum_probs=135.9

Q ss_pred             ccccccCCCCCeEEcChhhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc--cchhhh
Q 017971           34 EEETKFKIDGKVIELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--KYSRLA  110 (363)
Q Consensus        34 ~~~~~~~~~~~v~~l~~~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--~~~~l~  110 (363)
                      +....++++++|+.|+.++|+.++... +.++|+||++|||||++|+|.|+++|+.+.++.+-+.++.|||.  .|..+|
T Consensus        30 ~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC  109 (606)
T KOG1731|consen   30 SNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC  109 (606)
T ss_pred             CCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence            555667788999999999999999444 59999999999999999999999999999999999999999996  568899


Q ss_pred             hhCCcCcCCEEEEEeCCE-E----EeecCCCCHHHHHHHHHhhc-----------CCCceecCCh---HHHHHHHHhcCC
Q 017971          111 SKQEIDAFPTLKIFMHGI-P----TEYYGPRKAELLVRYLKKFV-----------APDVSILNSD---AEVSDFVENAGT  171 (363)
Q Consensus       111 ~~~~i~~~Pt~~~~~~g~-~----~~y~g~~~~~~i~~~i~~~~-----------~~~v~~i~~~---~~~~~~~~~~~~  171 (363)
                      ++|+|.+||++++|..+. .    ..+.|.....++.+.+.+.+           .|....+.+.   .++.+.+.+.. 
T Consensus       110 Ref~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~-  188 (606)
T KOG1731|consen  110 REFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTA-  188 (606)
T ss_pred             hhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhccccccc-
Confidence            999999999999997552 1    23566666666666554433           2434444443   34444433222 


Q ss_pred             cccEEEeec-CChhH-HHHHHHHhhh-hhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCC----CHHHHH
Q 017971          172 FFPLFIGFG-LDESV-MSNLALKYKK-KAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPF----DEEFLE  244 (363)
Q Consensus       172 ~~~~~v~~~-~~~~~-~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~----~~~~l~  244 (363)
                      .. +-+.+. .+... +..+-..+.. ...+....+....-...++++..|..++++.+... ..+....    -.+.|.
T Consensus       189 ~y-vAiv~e~~~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q-~l~~~~~s~~~y~~~I~  266 (606)
T KOG1731|consen  189 NY-VAIVFETEPSDLGWANLLNDLPSKQVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQ-PLWPSSSSRSAYVKKID  266 (606)
T ss_pred             ce-eEEEEecCCcccHHHHHHhhccCCCcceEEEecchhccccccCCCCchhhhhhcCCccc-ccccccccHHHHHHHHH
Confidence            22 223332 22222 2222221111 11111111111111222677778888888874322 2222222    347777


Q ss_pred             HHHHhh
Q 017971          245 EFIKQN  250 (363)
Q Consensus       245 ~fi~~~  250 (363)
                      ++|-+.
T Consensus       267 ~~lg~~  272 (606)
T KOG1731|consen  267 DLLGDK  272 (606)
T ss_pred             HHhcCc
Confidence            887665

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.80  E-value=3.2e-19  Score=134.26  Aligned_cols=84  Identities=24%  Similarity=0.486  Sum_probs=77.1

Q ss_pred             cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhhhCCcCcCCEEEEEeCCEEEeecCCC
Q 017971           58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPR  136 (363)
Q Consensus        58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~  136 (363)
                      .++++++|.|||+||++|+++.|.|+++++.+.+    +.++.||++ +++.++++|+|.++||+++|++|...+|.|.+
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~   91 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTR   91 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCC
Confidence            5678999999999999999999999999998753    778999999 89999999999999999999999666799999


Q ss_pred             CHHHHHHHH
Q 017971          137 KAELLVRYL  145 (363)
Q Consensus       137 ~~~~i~~~i  145 (363)
                      +.+.|.+|+
T Consensus        92 ~~~~l~~f~  100 (100)
T cd02999          92 TLDSLAAFY  100 (100)
T ss_pred             CHHHHHhhC
Confidence            999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.80  E-value=5.4e-19  Score=134.61  Aligned_cols=100  Identities=41%  Similarity=0.724  Sum_probs=88.7

Q ss_pred             CeEEcChhhHHHhHcC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .|.+|+.++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+++ ..++.++.+||+++ +++..+++.++|+++
T Consensus         1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~   78 (104)
T cd02995           1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDATAN-DVPSEFVVDGFPTIL   78 (104)
T ss_pred             CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeCcch-hhhhhccCCCCCEEE
Confidence            3789999999998844 58999999999999999999999999998865 34699999999987 588899999999999


Q ss_pred             EEeCCE---EEeecCCCCHHHHHHHH
Q 017971          123 IFMHGI---PTEYYGPRKAELLVRYL  145 (363)
Q Consensus       123 ~~~~g~---~~~y~g~~~~~~i~~~i  145 (363)
                      +|++|.   ...|.|.++.+.|.+||
T Consensus        79 ~~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          79 FFPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EEcCCCcCCceEccCCcCHHHHHhhC
Confidence            999876   45699999999999985

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PRK09381 trxA thioredoxin; Provisional

Probab=99.80  E-value=1.8e-18  Score=132.85  Aligned_cols=104  Identities=35%  Similarity=0.585  Sum_probs=94.3

Q ss_pred             CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +.|+++++++|++.+ +.+++++|.||++||++|+.+.|.|+++++.+.+   ++.++.+||+.++.++++|++.++|++
T Consensus         3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~   79 (109)
T PRK09381          3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTL   79 (109)
T ss_pred             CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCChhHHHhCCCCcCCEE
Confidence            578999999999854 6678999999999999999999999999998754   499999999999999999999999999


Q ss_pred             EEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          122 KIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|++|+.+ .+.|..+.+.|..|+..++
T Consensus        80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         80 LLFKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            999999876 5889999999999998765

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.79  E-value=1.4e-18  Score=130.37  Aligned_cols=91  Identities=32%  Similarity=0.514  Sum_probs=82.0

Q ss_pred             hHHHhH-cC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEE
Q 017971           52 NFDSAI-SS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIP  129 (363)
Q Consensus        52 ~f~~~l-~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~  129 (363)
                      +|++.+ +. +++++|.||++||++|+++.|.+.++++.+.+   .+.++.+||++++.+|++|+|.++|++++|++|+.
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~   78 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP   78 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence            577777 33 57999999999999999999999999988754   39999999999999999999999999999999987


Q ss_pred             E-eecCCCCHHHHHHHH
Q 017971          130 T-EYYGPRKAELLVRYL  145 (363)
Q Consensus       130 ~-~y~g~~~~~~i~~~i  145 (363)
                      + .|.|..+.+.|..|+
T Consensus        79 ~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          79 VDGFQGAQPEEQLRQML   95 (96)
T ss_pred             eeeecCCCCHHHHHHHh
Confidence            6 499999999999987

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PHA02278 thioredoxin-like protein

Probab=99.79  E-value=1.7e-18  Score=130.16  Aligned_cols=92  Identities=16%  Similarity=0.161  Sum_probs=81.4

Q ss_pred             hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc----hhhhhhCCcCcCCEEEEEe
Q 017971           50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLASKQEIDAFPTLKIFM  125 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~  125 (363)
                      .++|++.++++++++|.|||+||++|+...|.++++++.+..   ++.|..+|++.+    ++++++|+|.++||+++|+
T Consensus         4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk   80 (103)
T PHA02278          4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK   80 (103)
T ss_pred             HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence            578999998899999999999999999999999999876433   367899999986    6899999999999999999


Q ss_pred             CCEEEe-ecCCCCHHHHHHH
Q 017971          126 HGIPTE-YYGPRKAELLVRY  144 (363)
Q Consensus       126 ~g~~~~-y~g~~~~~~i~~~  144 (363)
                      +|+.+. ..|..+.+.|.+|
T Consensus        81 ~G~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         81 DGQLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             CCEEEEEEeCCCCHHHHHhh
Confidence            998875 7898888888776

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.78  E-value=1.5e-18  Score=132.34  Aligned_cols=101  Identities=49%  Similarity=0.899  Sum_probs=89.5

Q ss_pred             CeEEcChhhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-chhhhhhCCcCcCCEE
Q 017971           44 KVIELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASKQEIDAFPTL  121 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~Pt~  121 (363)
                      .+.++++++|++.+.+. ++++|.||++||++|+++.|.|.++++.++. ..++.++.+||++ ++.+|++++|.++|++
T Consensus         1 ~~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~i~~~P~~   79 (105)
T cd02998           1 NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDADEANKDLAKKYGVSGFPTL   79 (105)
T ss_pred             CeEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence            36789999999988654 4999999999999999999999999998862 3459999999999 9999999999999999


Q ss_pred             EEEeCC--EEEeecCCCCHHHHHHHH
Q 017971          122 KIFMHG--IPTEYYGPRKAELLVRYL  145 (363)
Q Consensus       122 ~~~~~g--~~~~y~g~~~~~~i~~~i  145 (363)
                      ++|.+|  ....|.|.++.+.|.+|+
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          80 KFFPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EEEeCCCCCccccCCccCHHHHHhhC
Confidence            999877  345699999999999985

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.77  E-value=7.8e-18  Score=127.50  Aligned_cols=96  Identities=21%  Similarity=0.394  Sum_probs=84.5

Q ss_pred             cChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971           48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG  127 (363)
Q Consensus        48 l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  127 (363)
                      -+.++|+++++++++++|.|||+||++|+.+.|.+.++++.+.+  ..+.|+.+|++ +++++++|+|+++||+++|++|
T Consensus         5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g   81 (102)
T cd02948           5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG   81 (102)
T ss_pred             cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence            46789999998899999999999999999999999999988753  24889999999 7889999999999999999999


Q ss_pred             EEEe-ecCCCCHHHHHHHHHh
Q 017971          128 IPTE-YYGPRKAELLVRYLKK  147 (363)
Q Consensus       128 ~~~~-y~g~~~~~~i~~~i~~  147 (363)
                      +.+. ..| .+.+.+.+++.+
T Consensus        82 ~~~~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          82 ELVAVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             EEEEEEec-CChHHHHHHHhh
Confidence            8876 455 588888888864

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.77  E-value=2.9e-18  Score=129.46  Aligned_cols=98  Identities=43%  Similarity=0.830  Sum_probs=88.8

Q ss_pred             EcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC
Q 017971           47 ELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH  126 (363)
Q Consensus        47 ~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~  126 (363)
                      ++++++|.+.+.++++++|.||++||++|+.+.|.|.++++.++ ....+.++.+||++++.+|++|+|.++|++++|.+
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   80 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELK-GDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN   80 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc-cCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence            67899999999888899999999999999999999999999884 13459999999999999999999999999999998


Q ss_pred             C--EEEeecCCCCHHHHHHHH
Q 017971          127 G--IPTEYYGPRKAELLVRYL  145 (363)
Q Consensus       127 g--~~~~y~g~~~~~~i~~~i  145 (363)
                      |  ...+|.|..+.+.|.+|+
T Consensus        81 ~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          81 GSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CCcccccCCCCcCHHHHHhhC
Confidence            7  455799999999999884

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.76  E-value=8.9e-18  Score=129.58  Aligned_cols=99  Identities=34%  Similarity=0.577  Sum_probs=83.2

Q ss_pred             CCeEEcChhhHHHhHcC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCC
Q 017971           43 GKVIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFP  119 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P  119 (363)
                      +.+++++.++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+++..+.+.++.+||+.  ++++|++|+|+++|
T Consensus         1 ~~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P   80 (114)
T cd02992           1 DPVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYP   80 (114)
T ss_pred             CCeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCC
Confidence            36899999999999854 4699999999999999999999999999887654569999999964  67899999999999


Q ss_pred             EEEEEeCCEEE-----eecCC-CCHHHH
Q 017971          120 TLKIFMHGIPT-----EYYGP-RKAELL  141 (363)
Q Consensus       120 t~~~~~~g~~~-----~y~g~-~~~~~i  141 (363)
                      |+++|++|...     .|.|. +..+++
T Consensus        81 t~~lf~~~~~~~~~~~~~~~~~~~~~~~  108 (114)
T cd02992          81 TLRYFPPFSKEATDGLKQEGPERDVNEL  108 (114)
T ss_pred             EEEEECCCCccCCCCCcccCCccCHHHH
Confidence            99999988633     36675 554444

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.75  E-value=7.7e-18  Score=127.48  Aligned_cols=84  Identities=21%  Similarity=0.285  Sum_probs=74.0

Q ss_pred             hhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971           50 ESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG  127 (363)
Q Consensus        50 ~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  127 (363)
                      .++|++.+.  .+++++|.|||+||++|+.+.|.++++++++.+.   +.|++||++++++++++|+|.+.||+++|++|
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G   78 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN   78 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence            467888885  5689999999999999999999999999987543   89999999999999999999999999999999


Q ss_pred             EEEe-ecCCC
Q 017971          128 IPTE-YYGPR  136 (363)
Q Consensus       128 ~~~~-y~g~~  136 (363)
                      +.+. ..|..
T Consensus        79 ~~v~~~~G~~   88 (114)
T cd02954          79 KHMKIDLGTG   88 (114)
T ss_pred             EEEEEEcCCC
Confidence            8775 44533

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>TIGR01068 thioredoxin thioredoxin

Probab=99.74  E-value=4.2e-17  Score=123.28  Aligned_cols=98  Identities=36%  Similarity=0.621  Sum_probs=87.2

Q ss_pred             cChhhHHHhHcC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC
Q 017971           48 LDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH  126 (363)
Q Consensus        48 l~~~~f~~~l~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~  126 (363)
                      ++.++|.+.+++ +++++|.||++||++|+.+.|.+.++++.+.+   ++.|+.+||++++.++++|+|.++|++++|++
T Consensus         1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~   77 (101)
T TIGR01068         1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKN   77 (101)
T ss_pred             CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeC
Confidence            467889998855 45999999999999999999999999987753   49999999999999999999999999999999


Q ss_pred             CEEE-eecCCCCHHHHHHHHHhh
Q 017971          127 GIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       127 g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                      |+.. .+.|..+.+.+.+|+++.
T Consensus        78 g~~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        78 GKEVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             CcEeeeecCCCCHHHHHHHHHhh
Confidence            8766 478999999999999875

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.73  E-value=1.3e-16  Score=137.50  Aligned_cols=189  Identities=21%  Similarity=0.209  Sum_probs=128.6

Q ss_pred             hhHHHhHcCCCeEEEEEEC---CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971           51 SNFDSAISSFDYILVDFYA---PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG  127 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~---~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  127 (363)
                      ..|.+.++ ++..++.|++   +||++|+.+.|.++++++.+.+  -.+.+..+|.+++++++++|+|.++||+++|++|
T Consensus        11 ~~~~~~~~-~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g   87 (215)
T TIGR02187        11 ELFLKELK-NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG   87 (215)
T ss_pred             HHHHHhcC-CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC
Confidence            33344343 4566777988   9999999999999999987742  1366777777799999999999999999999999


Q ss_pred             EEE--eecCCCCHHHHHHHHHhhcC--CCceecCChHHHHHHHHhcCCcccEEEeecCC-hh---H----HHHHHHHhhh
Q 017971          128 IPT--EYYGPRKAELLVRYLKKFVA--PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-ES---V----MSNLALKYKK  195 (363)
Q Consensus       128 ~~~--~y~g~~~~~~i~~~i~~~~~--~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~-~~---~----~~~~a~~~~~  195 (363)
                      ..+  +|.|..+.+.+.+|+...++  .....+ +.... +.++..+.. +.++.|... .+   .    +..++....+
T Consensus        88 ~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L-~~~~~-~~l~~~~~p-v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~  164 (215)
T TIGR02187        88 KDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL-SEKTV-ELLQSLDEP-VRIEVFVTPTCPYCPYAVLMAHKFALANDK  164 (215)
T ss_pred             eeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC-CHHHH-HHHHhcCCC-cEEEEEECCCCCCcHHHHHHHHHHHHhcCc
Confidence            875  58999999999999988853  223334 32323 333333322 334435433 22   2    3333333211


Q ss_pred             hhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHh
Q 017971          196 KAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ  249 (363)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~  249 (363)
                      .....+..+..++++.+|++.+.|++++++..  .  .+.|....+++.+|+.+
T Consensus       165 i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~--~--~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       165 ILGEMIEANENPDLAEKYGVMSVPKIVINKGV--E--EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             eEEEEEeCCCCHHHHHHhCCccCCEEEEecCC--E--EEECCCCHHHHHHHHHh
Confidence            11111223456788999999999999998542  2  27788899999999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.73  E-value=4.1e-17  Score=122.60  Aligned_cols=97  Identities=16%  Similarity=0.081  Sum_probs=87.8

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCC--ChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPW--CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~--C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      .+.-.+|..||++.+..+++.+|.||++|  |++|+.+.|.++++++++.+.   +.|+++|++++++++.+|+|+++||
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~~la~~f~V~sIPT   86 (111)
T cd02965          10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQALAARFGVLRTPA   86 (111)
T ss_pred             cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCHHHHHHcCCCcCCE
Confidence            45677899999999988899999999997  999999999999999987654   8999999999999999999999999


Q ss_pred             EEEEeCCEEEe-ecCCCCHHHHH
Q 017971          121 LKIFMHGIPTE-YYGPRKAELLV  142 (363)
Q Consensus       121 ~~~~~~g~~~~-y~g~~~~~~i~  142 (363)
                      +++|++|+.+. ..|..+.+++.
T Consensus        87 li~fkdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          87 LLFFRDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             EEEEECCEEEEEEeCccCHHHHh
Confidence            99999998874 78988777664

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.73  E-value=6.4e-17  Score=122.67  Aligned_cols=94  Identities=16%  Similarity=0.266  Sum_probs=79.0

Q ss_pred             ChhhHHHhHcC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch---hhhhhCCcCcCCEEEE
Q 017971           49 DESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS---RLASKQEIDAFPTLKI  123 (363)
Q Consensus        49 ~~~~f~~~l~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~  123 (363)
                      +.++|++.+.+  +++++|.|||+||++|+.+.|.++++++.+    +++.|+.||++++.   +++++|+|.++||+++
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~----~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~   77 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC----NDVVFLLVNGDENDSTMELCRREKIIEVPHFLF   77 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC----CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence            45788888843  789999999999999999999999999887    24899999999874   8999999999999999


Q ss_pred             EeCCEEE-eecCCCCHHHHHHHHHh
Q 017971          124 FMHGIPT-EYYGPRKAELLVRYLKK  147 (363)
Q Consensus       124 ~~~g~~~-~y~g~~~~~~i~~~i~~  147 (363)
                      |++|+.+ .+.| ...+.|.+-+.+
T Consensus        78 ~~~G~~v~~~~G-~~~~~l~~~~~~  101 (103)
T cd02985          78 YKDGEKIHEEEG-IGPDELIGDVLY  101 (103)
T ss_pred             EeCCeEEEEEeC-CCHHHHHHHHHh
Confidence            9999876 4778 445666665543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.72  E-value=7.9e-17  Score=124.38  Aligned_cols=88  Identities=27%  Similarity=0.448  Sum_probs=78.7

Q ss_pred             CCCeEEcChhhHHHhHcCC---CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           42 DGKVIELDESNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~---~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      .+.+.++++++|.+.+.+.   ++++|.||+|||++|+.+.|.++++++.+.    ++.|++||++++ .++++|+|.++
T Consensus         3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~~~-~l~~~~~i~~~   77 (113)
T cd02957           3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAEKA-FLVNYLDIKVL   77 (113)
T ss_pred             CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEchhh-HHHHhcCCCcC
Confidence            3678899999999988554   799999999999999999999999998764    388999999999 99999999999


Q ss_pred             CEEEEEeCCEEEe-ecC
Q 017971          119 PTLKIFMHGIPTE-YYG  134 (363)
Q Consensus       119 Pt~~~~~~g~~~~-y~g  134 (363)
                      ||+++|++|+.+. +.|
T Consensus        78 Pt~~~f~~G~~v~~~~G   94 (113)
T cd02957          78 PTLLVYKNGELIDNIVG   94 (113)
T ss_pred             CEEEEEECCEEEEEEec
Confidence            9999999998774 555

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PLN02309 5'-adenylylsulfate reductase

Probab=99.72  E-value=5.6e-17  Score=151.91  Aligned_cols=106  Identities=25%  Similarity=0.525  Sum_probs=94.1

Q ss_pred             CCCCeEEcChhhHHHhH---cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhh-hCCc
Q 017971           41 IDGKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLAS-KQEI  115 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l---~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~l~~-~~~i  115 (363)
                      ....|+.|+.++|++.+   +.+++++|.||+|||++|+.+.|.|+++++.+.+.  ++.|+++||+ .+.++|+ +|+|
T Consensus       343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~~~la~~~~~I  420 (457)
T PLN02309        343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQKEFAKQELQL  420 (457)
T ss_pred             CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcchHHHHhhCCC
Confidence            55689999999999987   46789999999999999999999999999988643  5999999999 8888997 6999


Q ss_pred             CcCCEEEEEeCCE--EEeecC-CCCHHHHHHHHHhh
Q 017971          116 DAFPTLKIFMHGI--PTEYYG-PRKAELLVRYLKKF  148 (363)
Q Consensus       116 ~~~Pt~~~~~~g~--~~~y~g-~~~~~~i~~~i~~~  148 (363)
                      .++||+++|++|.  ++.|.| .++.+.|++|++..
T Consensus       421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        421 GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            9999999998764  567985 79999999999864

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.72  E-value=5.3e-17  Score=152.10  Aligned_cols=106  Identities=25%  Similarity=0.474  Sum_probs=92.2

Q ss_pred             CCCCeEEcChhhHHHhHc---CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-hhh-hhCCc
Q 017971           41 IDGKVIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RLA-SKQEI  115 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l~---~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~-~~~~i  115 (363)
                      ....|++|+.+||++.++   .+++++|.||||||++|+.+.|.|+++++.+.+.  .+.|+.|||+.+. .++ ++|+|
T Consensus       349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~~~~~~~~~~I  426 (463)
T TIGR00424       349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQKEFAKQELQL  426 (463)
T ss_pred             CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCccHHHHHHcCC
Confidence            456899999999999985   7789999999999999999999999999988643  3899999999764 454 78999


Q ss_pred             CcCCEEEEEeCCE--EEeec-CCCCHHHHHHHHHhh
Q 017971          116 DAFPTLKIFMHGI--PTEYY-GPRKAELLVRYLKKF  148 (363)
Q Consensus       116 ~~~Pt~~~~~~g~--~~~y~-g~~~~~~i~~~i~~~  148 (363)
                      .++||+++|++|.  ++.|. |.++.+.|+.|++..
T Consensus       427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            9999999999874  56797 589999999999753

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.6e-17  Score=154.50  Aligned_cols=105  Identities=40%  Similarity=0.680  Sum_probs=94.4

Q ss_pred             CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +.|..+-.+||+.++ +..+-+||.||||||+||++++|.|+++|+.+++ ..++.++++|.+.|.-  ....+.++|||
T Consensus       366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKmDaTaNd~--~~~~~~~fPTI  442 (493)
T KOG0190|consen  366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKMDATANDV--PSLKVDGFPTI  442 (493)
T ss_pred             CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEeccccccC--ccccccccceE
Confidence            579999999999987 7778999999999999999999999999999987 6689999999998863  45677889999


Q ss_pred             EEEeCCE---EEeecCCCCHHHHHHHHHhhcC
Q 017971          122 KIFMHGI---PTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       122 ~~~~~g~---~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                      ++|+.|.   ++.|.|.|+.+++..|+.+...
T Consensus       443 ~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  443 LFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT  474 (493)
T ss_pred             EEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence            9998764   6789999999999999998876

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.71  E-value=2e-16  Score=121.65  Aligned_cols=99  Identities=27%  Similarity=0.384  Sum_probs=84.6

Q ss_pred             CCeEEcCh-hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELDE-SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~~-~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +.+..+++ ++|.+.+.++++++|.||+|||++|+...|.++++++.+.    ++.|.+||++++++++++|+|.++||+
T Consensus         4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~~~l~~~~~v~~vPt~   79 (113)
T cd02989           4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKAPFLVEKLNIKVLPTV   79 (113)
T ss_pred             CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccCHHHHHHCCCccCCEE
Confidence            56788877 8999999888999999999999999999999999998753    389999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecC--------CCCHHHHHHHH
Q 017971          122 KIFMHGIPTE-YYG--------PRKAELLVRYL  145 (363)
Q Consensus       122 ~~~~~g~~~~-y~g--------~~~~~~i~~~i  145 (363)
                      ++|++|+.+. +.|        ..+.+++..|+
T Consensus        80 l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          80 ILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            9999998663 333        34455555554

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.69  E-value=3.9e-16  Score=117.19  Aligned_cols=94  Identities=22%  Similarity=0.468  Sum_probs=80.3

Q ss_pred             ChhhHHHhHcCC--CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC
Q 017971           49 DESNFDSAISSF--DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH  126 (363)
Q Consensus        49 ~~~~f~~~l~~~--~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~  126 (363)
                      +.++|++.+...  ++++|.||++||++|+++.|.++++++.+   ...+.++.+|++++++++++|++.++||+++|++
T Consensus         1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~---~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~   77 (97)
T cd02984           1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA---FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRN   77 (97)
T ss_pred             CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh---CCceEEEEEccccCHHHHHhcCCccccEEEEEEC
Confidence            357888888665  89999999999999999999999999886   3359999999999999999999999999999999


Q ss_pred             CEEEeecCCCCHHHHHHHH
Q 017971          127 GIPTEYYGPRKAELLVRYL  145 (363)
Q Consensus       127 g~~~~y~g~~~~~~i~~~i  145 (363)
                      |+.+....+...+.|.+.+
T Consensus        78 g~~~~~~~g~~~~~l~~~~   96 (97)
T cd02984          78 GTIVDRVSGADPKELAKKV   96 (97)
T ss_pred             CEEEEEEeCCCHHHHHHhh
Confidence            9887643335667776654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.68  E-value=3.8e-16  Score=151.37  Aligned_cols=112  Identities=28%  Similarity=0.522  Sum_probs=100.1

Q ss_pred             CCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      .++.+..++.++|++.+ +.+++++|.|||+||++|+++.|.|+++++.+++ ...+.++.+||+.+...|++++++++|
T Consensus       355 ~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~v~~~~id~~~~~~~~~~~~v~~~P  433 (477)
T PTZ00102        355 QDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-NDSIIVAKMNGTANETPLEEFSWSAFP  433 (477)
T ss_pred             CCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCcEEEEEEECCCCccchhcCCCcccC
Confidence            36679999999999985 7778999999999999999999999999988765 346999999999999999999999999


Q ss_pred             EEEEEeCCEE--EeecCCCCHHHHHHHHHhhcCCCc
Q 017971          120 TLKIFMHGIP--TEYYGPRKAELLVRYLKKFVAPDV  153 (363)
Q Consensus       120 t~~~~~~g~~--~~y~g~~~~~~i~~~i~~~~~~~v  153 (363)
                      |+++|++|..  ..|.|.++.+.|.+|+.++...+.
T Consensus       434 t~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~  469 (477)
T PTZ00102        434 TILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF  469 (477)
T ss_pred             eEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence            9999998754  479999999999999999986433

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.67  E-value=3.4e-16  Score=119.10  Aligned_cols=92  Identities=23%  Similarity=0.308  Sum_probs=80.6

Q ss_pred             hhHHHhHcCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCcc----chhhhhhCCcCcCCEEEE
Q 017971           51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADK----YSRLASKQEIDAFPTLKI  123 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~  123 (363)
                      +.|+++++++++++|.||++||++|+++.|.+   .++++.+.+   ++.++.+|+++    .++++++|+|.++||+++
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~   78 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF   78 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence            57888898999999999999999999999998   577777754   49999999987    678999999999999999


Q ss_pred             Ee--CCEE-EeecCCCCHHHHHHHH
Q 017971          124 FM--HGIP-TEYYGPRKAELLVRYL  145 (363)
Q Consensus       124 ~~--~g~~-~~y~g~~~~~~i~~~i  145 (363)
                      |+  +|+. ..+.|..+.++|.+++
T Consensus        79 ~~~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          79 YGPGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             ECCCCCCCCcccccccCHHHHHHHh
Confidence            98  5654 4589999999998876

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PTZ00051 thioredoxin; Provisional

Probab=99.66  E-value=9.9e-16  Score=115.22  Aligned_cols=92  Identities=37%  Similarity=0.729  Sum_probs=78.9

Q ss_pred             EEc-ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971           46 IEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        46 ~~l-~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      .++ +.++++++++.+++++|.||++||++|+.+.|.++++++.+.    ++.++.+|++++..++++|++.++|++++|
T Consensus         3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   78 (98)
T PTZ00051          3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDELSEVAEKENITSMPTFKVF   78 (98)
T ss_pred             EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence            344 457889999888999999999999999999999999998643    389999999999999999999999999999


Q ss_pred             eCCEEEe-ecCCCCHHHHH
Q 017971          125 MHGIPTE-YYGPRKAELLV  142 (363)
Q Consensus       125 ~~g~~~~-y~g~~~~~~i~  142 (363)
                      ++|+.+. +.|. ..++|.
T Consensus        79 ~~g~~~~~~~G~-~~~~~~   96 (98)
T PTZ00051         79 KNGSVVDTLLGA-NDEALK   96 (98)
T ss_pred             eCCeEEEEEeCC-CHHHhh
Confidence            9998774 7774 455543

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=2.1e-15  Score=113.42  Aligned_cols=84  Identities=33%  Similarity=0.648  Sum_probs=71.7

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEe-ecCCCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRK  137 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~-y~g~~~  137 (363)
                      .+++++|.|||+||++|+...|.+.+++.++.+    +.|.+||++++.++|++++|+..||+.+|++|+.+. +.|...
T Consensus        20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~   95 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK   95 (106)
T ss_pred             CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence            358999999999999999999999999987643    999999999999999999999999999999998764 677543


Q ss_pred             HHHHHHHHHh
Q 017971          138 AELLVRYLKK  147 (363)
Q Consensus       138 ~~~i~~~i~~  147 (363)
                      . .+.+.+.+
T Consensus        96 ~-~l~~~i~~  104 (106)
T KOG0907|consen   96 A-ELEKKIAK  104 (106)
T ss_pred             H-HHHHHHHh
Confidence            3 55555443

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.65  E-value=3e-15  Score=117.87  Aligned_cols=97  Identities=16%  Similarity=0.228  Sum_probs=78.2

Q ss_pred             ChhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE-EEe
Q 017971           49 DESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK-IFM  125 (363)
Q Consensus        49 ~~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~-~~~  125 (363)
                      +..++++.+  .++++++|.|||+||++|+...|.++++++++.+.   +.|++||++++++++++|+|++.|+++ +|+
T Consensus        10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk   86 (142)
T PLN00410         10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVPDFNTMYELYDPCTVMFFFR   86 (142)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence            367899988  45679999999999999999999999999987554   889999999999999999999776666 999


Q ss_pred             CCE-EEe-ecC--------CCCHHHHHHHHHhh
Q 017971          126 HGI-PTE-YYG--------PRKAELLVRYLKKF  148 (363)
Q Consensus       126 ~g~-~~~-y~g--------~~~~~~i~~~i~~~  148 (363)
                      +|+ .+. ..|        ..+.+++++-+...
T Consensus        87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~  119 (142)
T PLN00410         87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETV  119 (142)
T ss_pred             CCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence            998 554 456        34455555544433

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.64  E-value=2.5e-15  Score=120.43  Aligned_cols=98  Identities=21%  Similarity=0.432  Sum_probs=82.5

Q ss_pred             hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCCEEEEEe-C
Q 017971           50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTLKIFM-H  126 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~-~  126 (363)
                      ...+++++..+++++|.||++||++|+.+.|.+.++++.+.+.   +.|..||.+.  ...++++|+|.++|++++|. +
T Consensus        10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~   86 (142)
T cd02950          10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE   86 (142)
T ss_pred             cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence            4567788888899999999999999999999999999887542   5666666554  46899999999999999995 7


Q ss_pred             CEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          127 GIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       127 g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      |+.+ .+.|....+.|.+++.+...
T Consensus        87 G~~v~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          87 GNEEGQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHHc
Confidence            8766 47899999999999988764

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.64  E-value=3.3e-15  Score=112.07  Aligned_cols=86  Identities=22%  Similarity=0.384  Sum_probs=78.2

Q ss_pred             cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEe-ecCCC
Q 017971           58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPR  136 (363)
Q Consensus        58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~-y~g~~  136 (363)
                      +.+++++|.||++||+.|+...|.++++++.+.+   ++.+..+|++++++++++++|.++|++++|++|+.+. +.|..
T Consensus        11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~   87 (97)
T cd02949          11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVK   87 (97)
T ss_pred             hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence            6778999999999999999999999999988754   4999999999999999999999999999999998764 88999


Q ss_pred             CHHHHHHHHH
Q 017971          137 KAELLVRYLK  146 (363)
Q Consensus       137 ~~~~i~~~i~  146 (363)
                      +.+.+.+|++
T Consensus        88 ~~~~~~~~l~   97 (97)
T cd02949          88 MKSEYREFIE   97 (97)
T ss_pred             cHHHHHHhhC
Confidence            9999988863

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.62  E-value=5.8e-15  Score=109.27  Aligned_cols=91  Identities=35%  Similarity=0.639  Sum_probs=81.5

Q ss_pred             hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEE
Q 017971           51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~  130 (363)
                      ++|++.++++++++|.||++||++|+.+.|.+.++++.    .+++.++.+||++++.+++++++.++|++++|.+|+.+
T Consensus         1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~   76 (93)
T cd02947           1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE----YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEV   76 (93)
T ss_pred             CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH----CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEE
Confidence            36788887779999999999999999999999999876    23599999999999999999999999999999999865


Q ss_pred             -eecCCCCHHHHHHHH
Q 017971          131 -EYYGPRKAELLVRYL  145 (363)
Q Consensus       131 -~y~g~~~~~~i~~~i  145 (363)
                       .+.|..+.+.|.+|+
T Consensus        77 ~~~~g~~~~~~l~~~i   92 (93)
T cd02947          77 DRVVGADPKEELEEFL   92 (93)
T ss_pred             EEEecCCCHHHHHHHh
Confidence             488988889998886

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.61  E-value=1.1e-14  Score=120.49  Aligned_cols=101  Identities=27%  Similarity=0.334  Sum_probs=84.1

Q ss_pred             CCCeEEcCh-hhHHHhHcCC---CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           42 DGKVIELDE-SNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        42 ~~~v~~l~~-~~f~~~l~~~---~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      -+.+.++++ ++|.+.+.+.   .+++|.||++||++|+.+.|.+.++|+.+.    .+.|++||+++. .++.+|+|.+
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~-~l~~~f~v~~  135 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT-GASDEFDTDA  135 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch-hhHHhCCCCC
Confidence            578899999 9999998543   399999999999999999999999998753    399999999987 8999999999


Q ss_pred             CCEEEEEeCCEEEe-ecC-------CCCHHHHHHHHHh
Q 017971          118 FPTLKIFMHGIPTE-YYG-------PRKAELLVRYLKK  147 (363)
Q Consensus       118 ~Pt~~~~~~g~~~~-y~g-------~~~~~~i~~~i~~  147 (363)
                      .||+++|++|+.+. ..|       ..+.+.|..|+.+
T Consensus       136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            99999999998764 333       3455556555543

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.60  E-value=9.5e-15  Score=109.64  Aligned_cols=79  Identities=23%  Similarity=0.292  Sum_probs=70.8

Q ss_pred             hhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971           50 ESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG  127 (363)
Q Consensus        50 ~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  127 (363)
                      .+.+++.+.  ++++++|.|+|+||++|+...|.++++|+++.+.   +.|+.||.++.+++++.|+|...||+++|++|
T Consensus         2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~dva~~y~I~amPtfvffkng   78 (114)
T cd02986           2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG   78 (114)
T ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence            356777774  5789999999999999999999999999987543   99999999999999999999999999999999


Q ss_pred             EEEe
Q 017971          128 IPTE  131 (363)
Q Consensus       128 ~~~~  131 (363)
                      +.+.
T Consensus        79 kh~~   82 (114)
T cd02986          79 QHMK   82 (114)
T ss_pred             cEEE
Confidence            8664

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.59  E-value=1.4e-14  Score=139.87  Aligned_cols=112  Identities=36%  Similarity=0.629  Sum_probs=97.2

Q ss_pred             CCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      .++.+..|+.++|++.+ +.++.++|.||++||++|+.+.|.|+++++.+++....+.++.+||+.+. ++. ++++++|
T Consensus       344 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~P  421 (462)
T TIGR01130       344 DEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFP  421 (462)
T ss_pred             CCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccC
Confidence            45689999999999987 66789999999999999999999999999998764336999999999875 334 9999999


Q ss_pred             EEEEEeCCEE---EeecCCCCHHHHHHHHHhhcCCCce
Q 017971          120 TLKIFMHGIP---TEYYGPRKAELLVRYLKKFVAPDVS  154 (363)
Q Consensus       120 t~~~~~~g~~---~~y~g~~~~~~i~~~i~~~~~~~v~  154 (363)
                      ++++|++|..   ..|.|.++.+.|.+|+.++...++.
T Consensus       422 t~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  459 (462)
T TIGR01130       422 TIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLE  459 (462)
T ss_pred             EEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCCc
Confidence            9999998754   5799999999999999998865543

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.57  E-value=2.9e-14  Score=109.72  Aligned_cols=95  Identities=18%  Similarity=0.225  Sum_probs=81.3

Q ss_pred             hHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCE---
Q 017971           52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI---  128 (363)
Q Consensus        52 ~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~---  128 (363)
                      +|.+.+..+..++|.||++||++|+.+.|.+++++... +   .+.+..+|.+++++++++|+|.++||+.+|++|.   
T Consensus        14 ~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~   89 (113)
T cd02975          14 EFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG   89 (113)
T ss_pred             HHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc
Confidence            35566666778999999999999999999999999764 2   3899999999999999999999999999999764   


Q ss_pred             EEeecCCCCHHHHHHHHHhhcC
Q 017971          129 PTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       129 ~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                      .+.+.|..+.+++.+|+.....
T Consensus        90 ~~~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          90 GIRYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             eEEEEecCchHHHHHHHHHHHh
Confidence            3468899889999999877643

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.57  E-value=5e-14  Score=109.66  Aligned_cols=99  Identities=13%  Similarity=0.093  Sum_probs=79.7

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-----------hhhh
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----------RLAS  111 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----------~l~~  111 (363)
                      ..+..++.+++.+.+.+++..+|+|+++||++|+.+.|.+.+++++.     ++.+..||.+.++           ++.+
T Consensus         6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~~~~   80 (122)
T TIGR01295         6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTAFRS   80 (122)
T ss_pred             ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHHHHH
Confidence            35677889999999999899999999999999999999999999862     2557777776443           4556


Q ss_pred             hCC----cCcCCEEEEEeCCEEEe-ecC-CCCHHHHHHHHH
Q 017971          112 KQE----IDAFPTLKIFMHGIPTE-YYG-PRKAELLVRYLK  146 (363)
Q Consensus       112 ~~~----i~~~Pt~~~~~~g~~~~-y~g-~~~~~~i~~~i~  146 (363)
                      +|+    |.++||+++|++|+.+. ..| ..+.++|.+|+.
T Consensus        81 ~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        81 RFGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             HcCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence            665    55699999999998876 567 566888888763

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=3.5e-14  Score=118.47  Aligned_cols=120  Identities=29%  Similarity=0.585  Sum_probs=96.5

Q ss_pred             eEEc-ChhhHHHhHcCC--CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           45 VIEL-DESNFDSAISSF--DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        45 v~~l-~~~~f~~~l~~~--~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      |+.+ ++..|+..+...  +.++|.|||.||++|++.+|.|+.+++++.+    ..|.+||.++.+..+..+||+..||+
T Consensus         3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c~~taa~~gV~amPTF   78 (288)
T KOG0908|consen    3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDECRGTAATNGVNAMPTF   78 (288)
T ss_pred             eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHhhchhhhcCcccCceE
Confidence            4444 457799888443  5999999999999999999999999998754    89999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecCCCCHHHHHHHHHhhcCCCce------ecCChHHHHHHHHhc
Q 017971          122 KIFMHGIPTE-YYGPRKAELLVRYLKKFVAPDVS------ILNSDAEVSDFVENA  169 (363)
Q Consensus       122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~~v~------~i~~~~~~~~~~~~~  169 (363)
                      ++|++|..++ +.| .++..|.+-+.+++....-      .....-++..++...
T Consensus        79 iff~ng~kid~~qG-Ad~~gLe~kv~~~~stsaa~~~~~~~~Kgq~dL~~~I~~~  132 (288)
T KOG0908|consen   79 IFFRNGVKIDQIQG-ADASGLEEKVAKYASTSAASSGTGDIVKGQMDLKPFIDKV  132 (288)
T ss_pred             EEEecCeEeeeecC-CCHHHHHHHHHHHhccCcccccCCCcccceehhhhhhhhh
Confidence            9999999887 555 6688888888888753221      223344677777654

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=4.5e-14  Score=132.45  Aligned_cols=108  Identities=41%  Similarity=0.739  Sum_probs=98.2

Q ss_pred             CeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .+..++..+|...+ +.+..|+|.||+|||+||+.+.|+|+++++.++. ...+.++.+||+.+..+|++++|+++||+.
T Consensus       145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~  223 (383)
T KOG0191|consen  145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATVHKSLASRLEVRGYPTLK  223 (383)
T ss_pred             ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccchHHHHhhhhcccCCceEE
Confidence            59999999999976 5667899999999999999999999999998875 556999999999999999999999999999


Q ss_pred             EEeCCEE-E-eecCCCCHHHHHHHHHhhcCCC
Q 017971          123 IFMHGIP-T-EYYGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       123 ~~~~g~~-~-~y~g~~~~~~i~~~i~~~~~~~  152 (363)
                      +|++|.. . .|.|.|+.+.|++|+.+...+.
T Consensus       224 ~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~  255 (383)
T KOG0191|consen  224 LFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN  255 (383)
T ss_pred             EecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence            9998876 3 4789999999999999998764

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.51  E-value=1.2e-13  Score=104.78  Aligned_cols=94  Identities=22%  Similarity=0.244  Sum_probs=80.0

Q ss_pred             hHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC--cCCEEEEEeC--C
Q 017971           52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID--AFPTLKIFMH--G  127 (363)
Q Consensus        52 ~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~--g  127 (363)
                      ++......++++++.|+++||++|+.+.|.++++|+++++.   +.|+.+|+++++.+++.+++.  ++|++.++++  |
T Consensus         4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~   80 (103)
T cd02982           4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDG   80 (103)
T ss_pred             HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccc
Confidence            33333333689999999999999999999999999998754   999999999999999999999  9999999998  6


Q ss_pred             EEEeecCC-CCHHHHHHHHHhh
Q 017971          128 IPTEYYGP-RKAELLVRYLKKF  148 (363)
Q Consensus       128 ~~~~y~g~-~~~~~i~~~i~~~  148 (363)
                      ..+.+.+. .+.+.|.+|+.+.
T Consensus        81 ~k~~~~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          81 KKYLMPEEELTAESLEEFVEDF  102 (103)
T ss_pred             cccCCCccccCHHHHHHHHHhh
Confidence            66665544 5899999999764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.50  E-value=2.6e-13  Score=106.78  Aligned_cols=97  Identities=18%  Similarity=0.236  Sum_probs=79.3

Q ss_pred             hhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHH---HHHHHhhcCCCCeEEEEEeCccc-------------hhhhhhC
Q 017971           51 SNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLD---EAAPILAKLKEPIVIAKVDADKY-------------SRLASKQ  113 (363)
Q Consensus        51 ~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~---~~a~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~  113 (363)
                      +.++++++++ ++++|.||++||++|+++.|.+.   .+.+.+++   ++.+..+|.+.+             .+++++|
T Consensus         4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~   80 (125)
T cd02951           4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVTDFDGEALSEKELARKY   80 (125)
T ss_pred             HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence            4567778888 99999999999999999999985   45555543   388899998764             6899999


Q ss_pred             CcCcCCEEEEEeCC--EEE-eecCCCCHHHHHHHHHhhcC
Q 017971          114 EIDAFPTLKIFMHG--IPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       114 ~i~~~Pt~~~~~~g--~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +|.++||+++|.++  +.+ ++.|..+.+.+.+++.....
T Consensus        81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            99999999999864  655 58899998998888876543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.48  E-value=9.2e-13  Score=109.85  Aligned_cols=113  Identities=19%  Similarity=0.314  Sum_probs=85.5

Q ss_pred             ccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------
Q 017971           34 EEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------  104 (363)
Q Consensus        34 ~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------  104 (363)
                      .+.+...++-.+..++.+.+.-.--.+++++|.||++||++|+...|.+.++++++.+.  .+.+..++++         
T Consensus        35 ~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~  112 (173)
T PRK03147         35 VQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNF  112 (173)
T ss_pred             cCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHH
Confidence            33334444555666666554432235689999999999999999999999999988754  3777777764         


Q ss_pred             -------------cchhhhhhCCcCcCCEEEEEe-CCEEE-eecCCCCHHHHHHHHHhh
Q 017971          105 -------------KYSRLASKQEIDAFPTLKIFM-HGIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       105 -------------~~~~l~~~~~i~~~Pt~~~~~-~g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                                   .+..+++.|++.++|+++++. +|+.+ .+.|..+.+++.+++.+.
T Consensus       113 ~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        113 VNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             HHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence                         346788999999999999986 56655 489999999999988753

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.48  E-value=4.8e-13  Score=112.26  Aligned_cols=98  Identities=18%  Similarity=0.300  Sum_probs=80.0

Q ss_pred             CCCeEEcChhhHHHhH-cC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           42 DGKVIELDESNFDSAI-SS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l-~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      -+.+.+++..+|...+ +.  +.+++|.||++||++|+.+.|.|+++|..+.    .+.|++||.++.   +..|++++.
T Consensus        81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad~~---~~~~~i~~l  153 (192)
T cd02988          81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIISTQC---IPNYPDKNL  153 (192)
T ss_pred             CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhHHh---HhhCCCCCC
Confidence            4789999999999876 33  2489999999999999999999999998764    389999998753   689999999


Q ss_pred             CEEEEEeCCEEEe-ecC-------CCCHHHHHHHHH
Q 017971          119 PTLKIFMHGIPTE-YYG-------PRKAELLVRYLK  146 (363)
Q Consensus       119 Pt~~~~~~g~~~~-y~g-------~~~~~~i~~~i~  146 (363)
                      ||+++|++|+.+. +.|       ..+.+.|..++.
T Consensus       154 PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~  189 (192)
T cd02988         154 PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV  189 (192)
T ss_pred             CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence            9999999998764 444       345555555554

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.47  E-value=5.3e-13  Score=96.72  Aligned_cols=80  Identities=24%  Similarity=0.340  Sum_probs=70.6

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHH
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLV  142 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~  142 (363)
                      .+..||++||++|+...|.++++++.++.   .+.+..||+++++++++++++.++|++++  +|+ ..+.|..+.+.+.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~~~~l~   75 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPTKEELV   75 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCCHHHHH
Confidence            36789999999999999999999987753   38999999999999999999999999986  665 4788999999999


Q ss_pred             HHHHhh
Q 017971          143 RYLKKF  148 (363)
Q Consensus       143 ~~i~~~  148 (363)
                      +++.+.
T Consensus        76 ~~l~~~   81 (82)
T TIGR00411        76 EAIKKR   81 (82)
T ss_pred             HHHHhh
Confidence            988764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PTZ00062 glutaredoxin; Provisional

Probab=99.44  E-value=3.9e-12  Score=107.05  Aligned_cols=108  Identities=9%  Similarity=0.124  Sum_probs=86.3

Q ss_pred             ChhhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971           49 DESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG  127 (363)
Q Consensus        49 ~~~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  127 (363)
                      +.+++++.++.+ +..+++|||+||+.|+...|.+.++++++.    .+.|+.||.+        |+|.++|++.+|++|
T Consensus         5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~d--------~~V~~vPtfv~~~~g   72 (204)
T PTZ00062          5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNLA--------DANNEYGVFEFYQNS   72 (204)
T ss_pred             CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEccc--------cCcccceEEEEEECC
Confidence            467788888755 789999999999999999999999998764    4999999966        999999999999999


Q ss_pred             EEEe-ecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcC
Q 017971          128 IPTE-YYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAG  170 (363)
Q Consensus       128 ~~~~-y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~  170 (363)
                      +.+. +.| .++..+.+++.++..+....- ....+++++++++
T Consensus        73 ~~i~r~~G-~~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~  114 (204)
T PTZ00062         73 QLINSLEG-CNTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHK  114 (204)
T ss_pred             EEEeeeeC-CCHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCC
Confidence            9886 555 559999999999887644321 1123556665553

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.40  E-value=2.1e-12  Score=99.10  Aligned_cols=79  Identities=20%  Similarity=0.351  Sum_probs=67.5

Q ss_pred             ChhhHHHhHcC--CCeEEEEEEC-------CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------chhhhhh
Q 017971           49 DESNFDSAISS--FDYILVDFYA-------PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------YSRLASK  112 (363)
Q Consensus        49 ~~~~f~~~l~~--~~~~lv~fy~-------~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~~~l~~~  112 (363)
                      +.++|.+.+..  +++++|.|||       +||++|+...|.+++++..+.+   ++.|..||.++       +.++..+
T Consensus         8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~w~d~~~~~~~~   84 (119)
T cd02952           8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPYWRDPNNPFRTD   84 (119)
T ss_pred             CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcccccCcchhhHhc
Confidence            35778888854  6799999999       9999999999999999988753   38999999976       4689999


Q ss_pred             CCcC-cCCEEEEEeCCEEE
Q 017971          113 QEID-AFPTLKIFMHGIPT  130 (363)
Q Consensus       113 ~~i~-~~Pt~~~~~~g~~~  130 (363)
                      ++|. ++||+++|++|..+
T Consensus        85 ~~I~~~iPT~~~~~~~~~l  103 (119)
T cd02952          85 PKLTTGVPTLLRWKTPQRL  103 (119)
T ss_pred             cCcccCCCEEEEEcCCcee
Confidence            9998 99999999877544

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.36  E-value=1.1e-11  Score=117.91  Aligned_cols=101  Identities=17%  Similarity=0.225  Sum_probs=77.5

Q ss_pred             CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEE------------------------
Q 017971           44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA------------------------   99 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~------------------------   99 (363)
                      .+.+++....  .++++++++|.|||+||++|++..|.+.+++++++..+  +.+.                        
T Consensus        42 ~l~D~dG~~v--~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~~~~~~~~~  117 (521)
T PRK14018         42 KTADNRPASV--YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLD  117 (521)
T ss_pred             EeecCCCcee--eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHHHHHHHhCC
Confidence            3444444433  23477899999999999999999999999998875322  3332                        


Q ss_pred             ----EEeCccchhhhhhCCcCcCCEEEEE-eCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971          100 ----KVDADKYSRLASKQEIDAFPTLKIF-MHGIPTE-YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       100 ----~vd~~~~~~l~~~~~i~~~Pt~~~~-~~g~~~~-y~g~~~~~~i~~~i~~~  148 (363)
                          .++++.+..+++.|+|.++|+.+++ ++|+.+. +.|..+.++|..+|+..
T Consensus       118 y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        118 YPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP  172 (521)
T ss_pred             CcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence                2455667789999999999999776 5787664 89999999999999844

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.30  E-value=1e-10  Score=98.36  Aligned_cols=87  Identities=15%  Similarity=0.250  Sum_probs=66.3

Q ss_pred             cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-----------------------hhhhhhCC
Q 017971           58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----------------------SRLASKQE  114 (363)
Q Consensus        58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~  114 (363)
                      .++++++|.||++||++|++..|.+.++++.      ++.+..|+.+++                       ..+++.|+
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g  139 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG  139 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence            3678999999999999999999999988642      255566664332                       23455789


Q ss_pred             cCcCCEEEEEe-CCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          115 IDAFPTLKIFM-HGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       115 i~~~Pt~~~~~-~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +.++|+.+++. +|+.. .+.|..+.+.+.+++...+.
T Consensus       140 v~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~  177 (185)
T PRK15412        140 VYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE  177 (185)
T ss_pred             CCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            99999877774 67654 47899999999888877653

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.30  E-value=2.2e-11  Score=105.00  Aligned_cols=95  Identities=19%  Similarity=0.206  Sum_probs=77.4

Q ss_pred             EcChhhHHHhHcCCCe-EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe
Q 017971           47 ELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM  125 (363)
Q Consensus        47 ~l~~~~f~~~l~~~~~-~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  125 (363)
                      .|++++.+.+-+..++ .++.||++||++|+...|.+++++...    +.+.+..+|.+++++++++|+|.++||+++++
T Consensus       119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~  194 (215)
T TIGR02187       119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANENPDLAEKYGVMSVPKIVINK  194 (215)
T ss_pred             CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCCCHHHHHHhCCccCCEEEEec
Confidence            4555555554443445 455599999999999999999988652    34999999999999999999999999999998


Q ss_pred             CCEEEeecCCCCHHHHHHHHHh
Q 017971          126 HGIPTEYYGPRKAELLVRYLKK  147 (363)
Q Consensus       126 ~g~~~~y~g~~~~~~i~~~i~~  147 (363)
                      +|..  +.|....+++.+|+.+
T Consensus       195 ~~~~--~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       195 GVEE--FVGAYPEEQFLEYILS  214 (215)
T ss_pred             CCEE--EECCCCHHHHHHHHHh
Confidence            8763  8899999999999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PHA02125 thioredoxin-like protein

Probab=99.27  E-value=3.6e-11  Score=85.26  Aligned_cols=68  Identities=29%  Similarity=0.518  Sum_probs=55.3

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEE-eecCC-CCHHHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGP-RKAELL  141 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~-~~~~~i  141 (363)
                      ++.||++||++|+.+.|.+++++         +.+..||++++++++++|+|.++||++   +|+.+ .+.|. .+..+|
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l   69 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAEL   69 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHH
Confidence            78999999999999999987653         457899999999999999999999987   56655 47774 444555


Q ss_pred             HH
Q 017971          142 VR  143 (363)
Q Consensus       142 ~~  143 (363)
                      .+
T Consensus        70 ~~   71 (75)
T PHA02125         70 KE   71 (75)
T ss_pred             HH
Confidence            54

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.26  E-value=2.3e-10  Score=96.28  Aligned_cols=163  Identities=25%  Similarity=0.336  Sum_probs=124.0

Q ss_pred             hHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC--CEEEeecCC-CCHHHHHHHHHhhcCCCc
Q 017971           77 RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH--GIPTEYYGP-RKAELLVRYLKKFVAPDV  153 (363)
Q Consensus        77 ~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~--g~~~~y~g~-~~~~~i~~~i~~~~~~~v  153 (363)
                      .....|.++|+.+.+.   +.|+.+.   ++++|+++++.. |++++|++  +++..|.|. .+.+.|.+||....-|.+
T Consensus         7 ~~~~~f~~~A~~~~~~---~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v   79 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGD---YQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLV   79 (184)
T ss_dssp             HHHHHHHHHHHHHTTT---SEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSC
T ss_pred             HHHHHHHHHHHhCcCC---cEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccc
Confidence            4677899999998764   9999888   788999999999 99999998  457889998 899999999999999999


Q ss_pred             eecCChHHHHHHHHhcCCcccEEEeecC-Ch-------hHHHHHHHHhhhhhHHHHh-hhcchhhhhhcCCC--CCCeEE
Q 017971          154 SILNSDAEVSDFVENAGTFFPLFIGFGL-DE-------SVMSNLALKYKKKAWFAVA-KDFSEDTMVLYDFD--KVPALV  222 (363)
Q Consensus       154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~-------~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~p~iv  222 (363)
                      .+++.. .+..+......  ++++.+.. +.       ..++.+|..+++...|..+ .+..+.....++++  ..|.++
T Consensus        80 ~~~t~~-n~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~v  156 (184)
T PF13848_consen   80 PELTPE-NFEKLFSSPKP--PVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALV  156 (184)
T ss_dssp             EEESTT-HHHHHHSTSSE--EEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEE
T ss_pred             cccchh-hHHHHhcCCCc--eEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEE
Confidence            999875 58888876542  24444443 22       2366778888877655544 23346678899998  789999


Q ss_pred             EEcCCCCCc-ccccCCCCHHHHHHHHHh
Q 017971          223 ALQPSYNEH-NIFYGPFDEEFLEEFIKQ  249 (363)
Q Consensus       223 ~~~~~~~~~-~~~~g~~~~~~l~~fi~~  249 (363)
                      ++....+.. ..+.++++.+.|.+|+++
T Consensus       157 i~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  157 IFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             EEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             EEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            998654443 224688999999999974

...

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.26  E-value=1.4e-11  Score=95.26  Aligned_cols=88  Identities=19%  Similarity=0.286  Sum_probs=62.1

Q ss_pred             hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-hhhhhCCcCc--CCEEEEEe-
Q 017971           50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RLASKQEIDA--FPTLKIFM-  125 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~--~Pt~~~~~-  125 (363)
                      ++.++.+..++++++|.|||+||++|+.+.|.+.+.+..... .  ..|..+|.+.++ ...+.|++.+  +||+++|. 
T Consensus         9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~--~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~   85 (117)
T cd02959           9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-S--HNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDP   85 (117)
T ss_pred             HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-c--CcEEEEEecCCCCchhhhcccCCCccceEEEECC
Confidence            344555667789999999999999999999999998765432 2  334445554443 4557899986  99999996 


Q ss_pred             CCEEEe----ecCCCCHHH
Q 017971          126 HGIPTE----YYGPRKAEL  140 (363)
Q Consensus       126 ~g~~~~----y~g~~~~~~  140 (363)
                      +|+.+.    ..|....+.
T Consensus        86 ~Gk~~~~~~~~~~~~~~~~  104 (117)
T cd02959          86 SGDVHPEIINKKGNPNYKY  104 (117)
T ss_pred             CCCCchhhccCCCCccccc
Confidence            776542    445444433

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.24  E-value=5.4e-11  Score=84.52  Aligned_cols=73  Identities=18%  Similarity=0.259  Sum_probs=59.5

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCC-CCHHHHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGP-RKAELLV  142 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~-~~~~~i~  142 (363)
                      -|.||++||++|+...|.++++++++..   .+.+..+|   +.+.+.++++.+.|++.+  +|+.+ +.|. .+.+.+.
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~   72 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKVT---DMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIK   72 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHH
Confidence            3789999999999999999999987643   48888888   455588899999999999  77766 7775 4557777


Q ss_pred             HHH
Q 017971          143 RYL  145 (363)
Q Consensus       143 ~~i  145 (363)
                      +++
T Consensus        73 ~~l   75 (76)
T TIGR00412        73 EIL   75 (76)
T ss_pred             HHh
Confidence            765

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.24  E-value=5e-11  Score=93.68  Aligned_cols=108  Identities=14%  Similarity=0.188  Sum_probs=89.6

Q ss_pred             CCcccCCh-hhHHhhhcCCCcEEEEEEeC---CChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCC
Q 017971          253 PLSVPINQ-DTLNLLKDDKRKIVLAIVED---ETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKS  326 (363)
Q Consensus       253 p~~~~lt~-~~~~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~  326 (363)
                      |-+.+++. +.+...|..+.-+++.|++.   .+.+..+++++.++++|+++++  +.|+|+|+.+++.+++.||+ ...
T Consensus         2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl-~~~   80 (130)
T cd02983           2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI-GGF   80 (130)
T ss_pred             CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC-Ccc
Confidence            44667775 45566887766777777753   3556678899999999999998  89999999999999999999 556


Q ss_pred             CCCeEEEEeCCC-CeeEEEEEEeehhhhhHhhhhhc
Q 017971          327 KLPKMVVWDGNE-NYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       327 ~~P~~vi~~~~~-~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +.|++++++.++ ||....++.+.+-|..|+..+|.
T Consensus        81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~  116 (130)
T cd02983          81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY  116 (130)
T ss_pred             CCCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence            899999999985 77778899999999999999874

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.24  E-value=3.4e-11  Score=92.04  Aligned_cols=103  Identities=12%  Similarity=0.109  Sum_probs=89.6

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---CCC-cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA---NRE-LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~---~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      ++++|.+++..+..++.|..++++   +.+..+.+.+.++.+|++   +++ +.|+++|+.++...++.||+ +..+.|.
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f---~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl-~~~~~P~   76 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFH---DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGK-TPADLPV   76 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEe---cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCC-CHhHCCE
Confidence            578999999999999999998888   455567788999999999   999 99999999998889999999 5668999


Q ss_pred             EEEEeCCC--CeeEEEEEEeehhhhhHhhhhhc
Q 017971          331 MVVWDGNE--NYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       331 ~vi~~~~~--~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++|.+..+  ||...+.+++.+-|..||..|+.
T Consensus        77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             EEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            99999975  44436778889999999999874

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.23  E-value=2e-10  Score=92.68  Aligned_cols=86  Identities=17%  Similarity=0.219  Sum_probs=63.0

Q ss_pred             cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc------------hhhh-hhC---CcCcCCEE
Q 017971           58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------SRLA-SKQ---EIDAFPTL  121 (363)
Q Consensus        58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------~~l~-~~~---~i~~~Pt~  121 (363)
                      ...++.+|.||++||++|++..|.++++++++.     +.+..|+.+..            .... ..+   ++.++|+.
T Consensus        48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt  122 (153)
T TIGR02738        48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPAT  122 (153)
T ss_pred             hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeE
Confidence            345677999999999999999999999998762     33434444322            2333 345   78999999


Q ss_pred             EEEeC-CE-EE-eecCCCCHHHHHHHHHhh
Q 017971          122 KIFMH-GI-PT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       122 ~~~~~-g~-~~-~y~g~~~~~~i~~~i~~~  148 (363)
                      +++.. |. .. .+.|..+.+.+.+.+.+.
T Consensus       123 ~LID~~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       123 FLVNVNTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             EEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence            99964 44 34 478999999988887654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.22  E-value=3e-10  Score=111.36  Aligned_cols=101  Identities=21%  Similarity=0.376  Sum_probs=80.8

Q ss_pred             CeEEc-ChhhHHHhH----cCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCccc----hhhhh
Q 017971           44 KVIEL-DESNFDSAI----SSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKY----SRLAS  111 (363)
Q Consensus        44 ~v~~l-~~~~f~~~l----~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~----~~l~~  111 (363)
                      ....+ +.+++++.+    .++++++|.|||+||++|+..++..   .++.+.++    ++.+.++|++++    .++++
T Consensus       453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~~~~~l~~  528 (571)
T PRK00293        453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNAEDVALLK  528 (571)
T ss_pred             CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCChhhHHHHH
Confidence            34445 456777766    3468999999999999999998875   56666553    388999999854    68899


Q ss_pred             hCCcCcCCEEEEEe-CCEEE---eecCCCCHHHHHHHHHhh
Q 017971          112 KQEIDAFPTLKIFM-HGIPT---EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       112 ~~~i~~~Pt~~~~~-~g~~~---~y~g~~~~~~i~~~i~~~  148 (363)
                      +|++.++|++++|. +|+.+   ++.|..+.+++.+++++.
T Consensus       529 ~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        529 HYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             HcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence            99999999999996 67763   578999999999998874

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.21  E-value=5.7e-11  Score=91.46  Aligned_cols=87  Identities=26%  Similarity=0.402  Sum_probs=62.3

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc--------------------hhhhhhCCcCcC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY--------------------SRLASKQEIDAF  118 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~i~~~  118 (363)
                      ++++.++.|+++||++|+++.+++.+..+.......++.+..++++..                    .++.+.++|.++
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt   83 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT   83 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence            568999999999999999999999875443222222467777777543                    358899999999


Q ss_pred             CEEEEEe-CCEEE-eecCCCCHHHHHHHH
Q 017971          119 PTLKIFM-HGIPT-EYYGPRKAELLVRYL  145 (363)
Q Consensus       119 Pt~~~~~-~g~~~-~y~g~~~~~~i~~~i  145 (363)
                      ||++++. +|+.+ .+.|..+.+++.+++
T Consensus        84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   84 PTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            9999996 67765 589999999998764

...

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.20  E-value=4.1e-10  Score=93.74  Aligned_cols=86  Identities=22%  Similarity=0.337  Sum_probs=66.8

Q ss_pred             cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-----------------------CccchhhhhhCC
Q 017971           58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-----------------------ADKYSRLASKQE  114 (363)
Q Consensus        58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~  114 (363)
                      .++++++|.||++||++|++..|.+.++++.    +  +.+..|+                       ++.+..+.+.|+
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~--~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~  134 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD----G--LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLG  134 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----C--CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcC
Confidence            4678999999999999999999999888753    1  3333333                       344556778899


Q ss_pred             cCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          115 IDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       115 i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      +.++|+.+++ ++|+.. .+.|..+.+++.+++++.+
T Consensus       135 v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       135 VYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             CeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence            9999976666 577754 4789999999999998875

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.16  E-value=1.2e-10  Score=90.35  Aligned_cols=79  Identities=20%  Similarity=0.282  Sum_probs=63.8

Q ss_pred             ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHH-HH--HHHHHhhcCCCCeEEEEEeCccchhhhhh--------CCcCc
Q 017971           49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQ-LD--EAAPILAKLKEPIVIAKVDADKYSRLASK--------QEIDA  117 (363)
Q Consensus        49 ~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~-~~--~~a~~~~~~~~~v~~~~vd~~~~~~l~~~--------~~i~~  117 (363)
                      +++.++.+.+++++++|.||++||+.|+.+.+. |.  ++++.+..   ++.+.++|.++++++++.        |++.|
T Consensus         4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G   80 (124)
T cd02955           4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIYMNAAQAMTGQGG   80 (124)
T ss_pred             CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence            567788889999999999999999999999874 33  35554433   488999999998888763        58999


Q ss_pred             CCEEEEEe-CCEEE
Q 017971          118 FPTLKIFM-HGIPT  130 (363)
Q Consensus       118 ~Pt~~~~~-~g~~~  130 (363)
                      +|+++++. +|+++
T Consensus        81 ~Pt~vfl~~~G~~~   94 (124)
T cd02955          81 WPLNVFLTPDLKPF   94 (124)
T ss_pred             CCEEEEECCCCCEE
Confidence            99999996 46655

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.15  E-value=8.2e-10  Score=85.70  Aligned_cols=105  Identities=14%  Similarity=0.150  Sum_probs=89.4

Q ss_pred             EEcChhhHHHhHcCCCeEEEEEECC--CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971           46 IELDESNFDSAISSFDYILVDFYAP--WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI  123 (363)
Q Consensus        46 ~~l~~~~f~~~l~~~~~~lv~fy~~--~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  123 (363)
                      ..++.++++..+..++..++.|-.+  .++.+...+=.+.++++++.+  .++.+++||++++++++.+|||.++||+++
T Consensus        20 ~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDiD~~~~LA~~fgV~siPTLl~   97 (132)
T PRK11509         20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_pred             CccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence            3455688899888877777666554  578888899999999998852  249999999999999999999999999999


Q ss_pred             EeCCEEEe-ecCCCCHHHHHHHHHhhcCCC
Q 017971          124 FMHGIPTE-YYGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       124 ~~~g~~~~-y~g~~~~~~i~~~i~~~~~~~  152 (363)
                      |++|+.+. ..|.++.+.+.+|+.+.+..+
T Consensus        98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~  127 (132)
T PRK11509         98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_pred             EECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence            99999885 789999999999999987654

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=99.12  E-value=4.2e-10  Score=85.81  Aligned_cols=102  Identities=11%  Similarity=0.094  Sum_probs=82.4

Q ss_pred             ccCChhhHHhhhcCCCcEEEEEEeC---CChhhHHHHHHHHHHHHHhCC-C-cEEEEEeccCchhHHhhcCCCCCCC--C
Q 017971          256 VPINQDTLNLLKDDKRKIVLAIVED---ETEEKSQKLVTTLKAAASANR-E-LVFCYVGIKQFADFADTFEANKKSK--L  328 (363)
Q Consensus       256 ~~lt~~~~~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~l~~~a~~~~-~-~~f~~vd~~~~~~~~~~~gi~~~~~--~  328 (363)
                      .++|.+|......  .|.++++++.   .+.+..+.+++.++++|++++ + +.|+|+|..++...++.||+ +..+  .
T Consensus         2 ~~~~~en~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl-~~~~~~~   78 (111)
T cd03073           2 GHRTKDNRAQFTK--KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGL-DFSGGEK   78 (111)
T ss_pred             CeeccchHHHhcc--CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCC-CcccCCC
Confidence            5678888888764  4556665533   245667889999999999999 6 99999999998889999999 4556  9


Q ss_pred             CeEEEEeCCCCeeEEEEEE-eehhhhhHhhhhh
Q 017971          329 PKMVVWDGNENYLTVSINV-LKTRVCFFMLTLL  360 (363)
Q Consensus       329 P~~vi~~~~~~y~~~~~~~-~~~~~~~~~~~~~  360 (363)
                      |+++|.+.+++.|..+.++ +.+-|..||..++
T Consensus        79 P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f~  111 (111)
T cd03073          79 PVVAIRTAKGKKYVMEEEFSDVDALEEFLEDFF  111 (111)
T ss_pred             CEEEEEeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence            9999999876555577788 8899999999875

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.11  E-value=4.4e-10  Score=89.10  Aligned_cols=73  Identities=27%  Similarity=0.395  Sum_probs=58.1

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc------------------------hhhhhhCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------------------SRLASKQE  114 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~  114 (363)
                      ++++++|.||++||++|++..|.+.++.+.+.+.+.++.+..|+.+.+                        ..+++.|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            568999999999999999999999999988875434566665555433                        45788999


Q ss_pred             cCcCCEEEEEe-CCEEEe
Q 017971          115 IDAFPTLKIFM-HGIPTE  131 (363)
Q Consensus       115 i~~~Pt~~~~~-~g~~~~  131 (363)
                      +.++|+++++. +|+.+.
T Consensus        97 v~~~P~~~lid~~G~i~~  114 (131)
T cd03009          97 IEGIPTLIILDADGEVVT  114 (131)
T ss_pred             CCCCCEEEEECCCCCEEc
Confidence            99999999996 565543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.09  E-value=4e-11  Score=99.67  Aligned_cols=105  Identities=25%  Similarity=0.464  Sum_probs=94.9

Q ss_pred             CCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      .+.+..++++|....+.  +-|+|+|+||||+.|+.+.|.|.+.|.--.+  -.|.++.||.+.++-|..+|-+...|||
T Consensus        23 ~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~npgLsGRF~vtaLptI   98 (248)
T KOG0913|consen   23 SSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTTNPGLSGRFLVTALPTI   98 (248)
T ss_pred             cceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEeccccceeeEEEecceE
Confidence            44899999999999875  5799999999999999999999999876554  3599999999999999999999999999


Q ss_pred             EEEeCCEEEeecCCCCHHHHHHHHHhhcC
Q 017971          122 KIFMHGIPTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       122 ~~~~~g~~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +..++|..-+|.|.|+..++++|+...-.
T Consensus        99 YHvkDGeFrrysgaRdk~dfisf~~~r~w  127 (248)
T KOG0913|consen   99 YHVKDGEFRRYSGARDKNDFISFEEHREW  127 (248)
T ss_pred             EEeeccccccccCcccchhHHHHHHhhhh
Confidence            99999998899999999999999976643

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=4.4e-10  Score=92.19  Aligned_cols=88  Identities=23%  Similarity=0.426  Sum_probs=75.2

Q ss_pred             CCCCeEEc-ChhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC-
Q 017971           41 IDGKVIEL-DESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID-  116 (363)
Q Consensus        41 ~~~~v~~l-~~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~-  116 (363)
                      ..+.+..+ +++.++..+  +....|+|.||+.|.+.|+.+.|.|.+++.++.  .+...||+||....++.+++|+|. 
T Consensus       122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn--~~~lkFGkvDiGrfpd~a~kfris~  199 (265)
T KOG0914|consen  122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYN--NNLLKFGKVDIGRFPDVAAKFRISL  199 (265)
T ss_pred             CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhC--CCCCcccceeeccCcChHHheeecc
Confidence            34567888 667777777  444699999999999999999999999998875  456999999999999999999874 


Q ss_pred             -----cCCEEEEEeCCEEE
Q 017971          117 -----AFPTLKIFMHGIPT  130 (363)
Q Consensus       117 -----~~Pt~~~~~~g~~~  130 (363)
                           ..||+.+|++|+.+
T Consensus       200 s~~srQLPT~ilFq~gkE~  218 (265)
T KOG0914|consen  200 SPGSRQLPTYILFQKGKEV  218 (265)
T ss_pred             CcccccCCeEEEEccchhh
Confidence                 58999999999765

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.08  E-value=6e-10  Score=77.20  Aligned_cols=65  Identities=23%  Similarity=0.429  Sum_probs=54.2

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecC
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYG  134 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g  134 (363)
                      .++.||++||++|++..+.++++++..    +++.+..+|.++++++++++++.++|++++  +| .+.|.|
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~-~~~~~g   66 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFPDLADEYGVMSVPAIVI--NG-KVEFVG   66 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCHhHHHHcCCcccCEEEE--CC-EEEEec
Confidence            467899999999999999999997642    349999999999999999999999999875  44 344444

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.06  E-value=9.2e-10  Score=86.20  Aligned_cols=94  Identities=23%  Similarity=0.289  Sum_probs=68.0

Q ss_pred             EEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEE--------------------EeCcc
Q 017971           46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK--------------------VDADK  105 (363)
Q Consensus        46 ~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~--------------------vd~~~  105 (363)
                      .+++++.+.....++++++|.||++||++|+...|.+.++++.+.-    +.+..                    +-++.
T Consensus         6 ~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~   81 (123)
T cd03011           6 TTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPV----VSVALRSGDDGAVARFMQKKGYGFPVINDP   81 (123)
T ss_pred             ecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCE----EEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence            3444444444444568999999999999999999999998876321    22211                    11245


Q ss_pred             chhhhhhCCcCcCCEEEEEeCCEEE-eecCCCCHHHHHH
Q 017971          106 YSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVR  143 (363)
Q Consensus       106 ~~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~i~~  143 (363)
                      +.++++.|+|.++|+++++.++... .+.|..+.+.|.+
T Consensus        82 ~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~  120 (123)
T cd03011          82 DGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL  120 (123)
T ss_pred             CcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence            5789999999999999999765532 3788888888764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR02740 TraF-like TraF-like protein

Probab=99.06  E-value=1.2e-09  Score=97.04  Aligned_cols=89  Identities=18%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------chhhhhhCCcCcCCEEEEEeC-CE
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------YSRLASKQEIDAFPTLKIFMH-GI  128 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~Pt~~~~~~-g~  128 (363)
                      .+++++|.||++||++|+...|.++++++++.   -.|....+|...         +..+++++||.++|+++++.+ |+
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~  241 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN  241 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence            36899999999999999999999999998763   124444444422         356889999999999999986 44


Q ss_pred             EE-e-ecCCCCHHHHHHHHHhhcC
Q 017971          129 PT-E-YYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       129 ~~-~-y~g~~~~~~i~~~i~~~~~  150 (363)
                      .+ . ..|..+.+.|.+.+.....
T Consensus       242 ~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       242 QFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHhc
Confidence            33 3 5799999999999887654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.04  E-value=1.8e-09  Score=85.11  Aligned_cols=78  Identities=22%  Similarity=0.345  Sum_probs=60.2

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-----------------------CccchhhhhhCCc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-----------------------ADKYSRLASKQEI  115 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i  115 (363)
                      ++++++|.||++||++|++..|.+.++++...     +.+..|+                       ++.+..+++.|++
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v   98 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV   98 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC
Confidence            46899999999999999999999999987641     4344333                       4566778899999


Q ss_pred             CcCCEEEEE-eCCEEE-eecCCCCHHHH
Q 017971          116 DAFPTLKIF-MHGIPT-EYYGPRKAELL  141 (363)
Q Consensus       116 ~~~Pt~~~~-~~g~~~-~y~g~~~~~~i  141 (363)
                      .++|+.+++ ++|+.. .+.|..+.+.|
T Consensus        99 ~~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010          99 YGVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CCCCeEEEECCCceEEEEEeccCChHhc
Confidence            999966666 577755 48898877654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.03  E-value=1.1e-09  Score=86.83  Aligned_cols=73  Identities=23%  Similarity=0.375  Sum_probs=57.5

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------------------------hhhhhhC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------------------SRLASKQ  113 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~  113 (363)
                      ++++++|.||++||++|+...|.+.++++.+++...++.+..|+++.+                         ..+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            468999999999999999999999999988875433466666665543                         2456779


Q ss_pred             CcCcCCEEEEEe-CCEEEe
Q 017971          114 EIDAFPTLKIFM-HGIPTE  131 (363)
Q Consensus       114 ~i~~~Pt~~~~~-~g~~~~  131 (363)
                      +|.++|+++++. +|+.+.
T Consensus        96 ~v~~iPt~~lid~~G~iv~  114 (132)
T cd02964          96 KVEGIPTLVVLKPDGDVVT  114 (132)
T ss_pred             CCCCCCEEEEECCCCCEEc
Confidence            999999999996 565543

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.02  E-value=1.5e-09  Score=82.19  Aligned_cols=98  Identities=17%  Similarity=0.313  Sum_probs=78.4

Q ss_pred             hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC--
Q 017971          261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN--  337 (363)
Q Consensus       261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~--  337 (363)
                      +++......+.|++++|+.. .....+.+...++++|+++++ +.|+|+|+++++++++.||+ ...+.|++++++.+  
T Consensus         3 ~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i-~~~~~P~~~~~~~~~~   80 (103)
T cd02982           3 ETFFNYEESGKPLLVLFYNK-DDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGL-KEEDLPVIAIINLSDG   80 (103)
T ss_pred             hHHhhhhhcCCCEEEEEEcC-ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCC-ChhhCCEEEEEecccc
Confidence            34444444467888877643 455678899999999999998 99999999999999999999 44589999999994  


Q ss_pred             CCeeEEEEEEeehhhhhHhhhhh
Q 017971          338 ENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       338 ~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++|....+.++.+.+.+|+..++
T Consensus        81 ~k~~~~~~~~~~~~l~~fi~~~~  103 (103)
T cd02982          81 KKYLMPEEELTAESLEEFVEDFL  103 (103)
T ss_pred             cccCCCccccCHHHHHHHHHhhC
Confidence            46666666678999999998765

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.96  E-value=2.8e-08  Score=81.71  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=64.3

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------------hhhhhhCCc--CcCCEEEEEe-CC
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------SRLASKQEI--DAFPTLKIFM-HG  127 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~i--~~~Pt~~~~~-~g  127 (363)
                      +|.||++||++|++..|.+.++++++.     +.+..|+.+..             ..+.+.|++  .++|+.+++. +|
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G  147 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT  147 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence            888999999999999999999998762     44444544322             235667885  6999999995 56


Q ss_pred             EEE--eecCCCCHHHHHHHHHhhcCC
Q 017971          128 IPT--EYYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       128 ~~~--~y~g~~~~~~i~~~i~~~~~~  151 (363)
                      +..  .+.|..+.+++.+.+...+.-
T Consensus       148 ~i~~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        148 LEALPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence            653  489999999998888877653

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.95  E-value=1.8e-08  Score=84.96  Aligned_cols=86  Identities=17%  Similarity=0.181  Sum_probs=59.1

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-------------C-----ccchhhhhhCCcCcCCE
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-------------A-----DKYSRLASKQEIDAFPT  120 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-------------~-----~~~~~l~~~~~i~~~Pt  120 (363)
                      ++++++|.||++||+.|++..|.+.++.+..   +.++.+...|             .     ....++++.|++.+.|+
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~  149 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY  149 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence            5689999999999999999999999987643   2224433311             0     12346788899999999


Q ss_pred             EEEEeCCEEEeecCC-CCHHHHHHHHHh
Q 017971          121 LKIFMHGIPTEYYGP-RKAELLVRYLKK  147 (363)
Q Consensus       121 ~~~~~~g~~~~y~g~-~~~~~i~~~i~~  147 (363)
                      .+++.....+.+.|. .+.+.+.+.++.
T Consensus       150 ~~lID~~G~I~~~g~~~~~~~le~ll~~  177 (189)
T TIGR02661       150 GVLLDQDGKIRAKGLTNTREHLESLLEA  177 (189)
T ss_pred             EEEECCCCeEEEccCCCCHHHHHHHHHH
Confidence            888865444555664 344566666543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.95  E-value=7.2e-09  Score=82.72  Aligned_cols=76  Identities=18%  Similarity=0.263  Sum_probs=58.7

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcC-----CCCeEEEEEeCccc-------------------------hh
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL-----KEPIVIAKVDADKY-------------------------SR  108 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~-----~~~v~~~~vd~~~~-------------------------~~  108 (363)
                      ++++++|+|||+||++|+++.|.+.++.+.+++.     ..++.+..|+.+++                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            5689999999999999999999999998877643     22477777765432                         24


Q ss_pred             hhhhCCcCcCCEEEEEe-CCEEEeecC
Q 017971          109 LASKQEIDAFPTLKIFM-HGIPTEYYG  134 (363)
Q Consensus       109 l~~~~~i~~~Pt~~~~~-~g~~~~y~g  134 (363)
                      ++++|++.++|+.+++. +|+.+.-.|
T Consensus       104 l~~~y~v~~iPt~vlId~~G~Vv~~~~  130 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDVLAANA  130 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcEEeeCh
Confidence            77788999999999996 566554444

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.95  E-value=7.3e-09  Score=77.08  Aligned_cols=66  Identities=30%  Similarity=0.493  Sum_probs=53.3

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-------------------------hhhhhCC
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-------------------------RLASKQE  114 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-------------------------~l~~~~~  114 (363)
                      +++++|.|||+||++|++..|.+.++.+.+++ +.++.+..|.+++..                         .+.+.|+
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG   79 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence            57999999999999999999999999999984 556989888876442                         3677788


Q ss_pred             cCcCCEEEEEeC
Q 017971          115 IDAFPTLKIFMH  126 (363)
Q Consensus       115 i~~~Pt~~~~~~  126 (363)
                      |.++|+++++..
T Consensus        80 i~~iP~~~lld~   91 (95)
T PF13905_consen   80 INGIPTLVLLDP   91 (95)
T ss_dssp             -TSSSEEEEEET
T ss_pred             CCcCCEEEEECC
Confidence            999999998864

...

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.94  E-value=6.8e-09  Score=75.88  Aligned_cols=76  Identities=14%  Similarity=0.200  Sum_probs=62.7

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHH
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAE  139 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~  139 (363)
                      ++.-+..|+++||++|....+.+.++++..    +++.+..+|.++.++++++|+|.++|++++  +|+. .+.|..+.+
T Consensus        12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~----~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-~~~G~~~~~   84 (89)
T cd03026          12 GPINFETYVSLSCHNCPDVVQALNLMAVLN----PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-FGFGRMTLE   84 (89)
T ss_pred             CCEEEEEEECCCCCCcHHHHHHHHHHHHHC----CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-EEeCCCCHH
Confidence            356788899999999999999999998754    249999999999999999999999999964  6653 446866666


Q ss_pred             HHH
Q 017971          140 LLV  142 (363)
Q Consensus       140 ~i~  142 (363)
                      +++
T Consensus        85 e~~   87 (89)
T cd03026          85 EIL   87 (89)
T ss_pred             HHh
Confidence            553

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.93  E-value=6.4e-09  Score=79.79  Aligned_cols=74  Identities=24%  Similarity=0.459  Sum_probs=62.5

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-----------------------hhhhhhCCc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----------------------SRLASKQEI  115 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i  115 (363)
                      .+++++|.||++||++|+...+.+.++.+.+.  ..++.+..|+++.+                       ..+++.|++
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYK--DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV   95 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhC--CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc
Confidence            36899999999999999999999999998875  23599999999886                       788999999


Q ss_pred             CcCCEEEEEe-CCEEEe-ecC
Q 017971          116 DAFPTLKIFM-HGIPTE-YYG  134 (363)
Q Consensus       116 ~~~Pt~~~~~-~g~~~~-y~g  134 (363)
                      .++|+++++. +|+.+. |.|
T Consensus        96 ~~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          96 RGLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             CccceEEEECCCCcEEEEecC
Confidence            9999999996 565443 544

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.91  E-value=8e-09  Score=97.83  Aligned_cols=109  Identities=19%  Similarity=0.328  Sum_probs=82.8

Q ss_pred             cCCCCCe-EEcChh-hHHHhHcCCC--eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc----hhhh
Q 017971           39 FKIDGKV-IELDES-NFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLA  110 (363)
Q Consensus        39 ~~~~~~v-~~l~~~-~f~~~l~~~~--~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~  110 (363)
                      +...+.. ..++.. .+++.+.+++  ++++.|||+||-.||.+++..-...+.. ..-.++...++|.+++    .++-
T Consensus       449 ~~~~~~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~-~~~~~~vlLqaDvT~~~p~~~~lL  527 (569)
T COG4232         449 SVSHGEFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQ-QALQDVVLLQADVTANDPAITALL  527 (569)
T ss_pred             CCccchhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHH-HhcCCeEEEEeeecCCCHHHHHHH
Confidence            3333443 566655 8899987666  9999999999999999988755322221 2234599999999876    5677


Q ss_pred             hhCCcCcCCEEEEEe-CCEE-EeecCCCCHHHHHHHHHhh
Q 017971          111 SKQEIDAFPTLKIFM-HGIP-TEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       111 ~~~~i~~~Pt~~~~~-~g~~-~~y~g~~~~~~i~~~i~~~  148 (363)
                      ++||+-+.|++.+|. +|+. ..-.|..+++.+.+++++.
T Consensus       528 k~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         528 KRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             HHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence            899999999999998 4543 3488999999999999875

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.87  E-value=8.9e-08  Score=71.97  Aligned_cols=106  Identities=25%  Similarity=0.449  Sum_probs=84.3

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-----cchhhhhhCCc--
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----KYSRLASKQEI--  115 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----~~~~l~~~~~i--  115 (363)
                      ...++|++-+|++++.+.+.+||.|-...  +.-.-+.+|.++|++.....+++-++.|...     +|.+|+++|++  
T Consensus         4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            35789999999999999999999998765  4556778899999555556778999999875     56889999999  


Q ss_pred             CcCCEEEEEeCC--EEEee--cCCCCHHHHHHHHHhhcC
Q 017971          116 DAFPTLKIFMHG--IPTEY--YGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       116 ~~~Pt~~~~~~g--~~~~y--~g~~~~~~i~~~i~~~~~  150 (363)
                      +.+|.+++|.+|  .++.|  .|..+.+.|..|+..+++
T Consensus        82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~  120 (126)
T PF07912_consen   82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG  120 (126)
T ss_dssp             CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred             ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence            569999999954  58888  899999999999998865

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.84  E-value=2.4e-08  Score=76.98  Aligned_cols=93  Identities=18%  Similarity=0.231  Sum_probs=72.3

Q ss_pred             HHhHcCCCeEEEEEECCCChhhhhHHHH-HH--HHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCcCcCCEEEEEeC--
Q 017971           54 DSAISSFDYILVDFYAPWCGHCKRLAPQ-LD--EAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFMH--  126 (363)
Q Consensus        54 ~~~l~~~~~~lv~fy~~~C~~C~~~~~~-~~--~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~--  126 (363)
                      +.+.+++++++|+|+++||+.|+.+... |.  ++.+.+++   ++.+..+|.+  +...+++.|++.++|++.++..  
T Consensus        11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~   87 (114)
T cd02958          11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRT   87 (114)
T ss_pred             HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCcc
Confidence            3344678999999999999999999764 43  24444443   3778888876  4567899999999999999964  


Q ss_pred             CEEE-eecCCCCHHHHHHHHHhhc
Q 017971          127 GIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       127 g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      |+.+ ...|..+++.+.+-+++..
T Consensus        88 g~~l~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          88 GEVLKVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             CcEeEEEcCCCCHHHHHHHHHHHH
Confidence            6655 4799999999988887653

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.1e-07  Score=74.17  Aligned_cols=96  Identities=24%  Similarity=0.304  Sum_probs=68.8

Q ss_pred             HHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----------------cchhhhhhCCcC
Q 017971           53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------KYSRLASKQEID  116 (363)
Q Consensus        53 f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------~~~~l~~~~~i~  116 (363)
                      ...+.-.+++.+++|-++.|.+|.++........+.-+....++.+..+|.+                ..++|++.|+++
T Consensus        35 ~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr  114 (182)
T COG2143          35 NKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR  114 (182)
T ss_pred             HHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence            4445556789999999999999999988865543322222234777777654                235899999999


Q ss_pred             cCCEEEEEeC-CEEE-eecCCCCHHHHHHHHHhh
Q 017971          117 AFPTLKIFMH-GIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       117 ~~Pt~~~~~~-g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                      ++|++++|.+ |+.+ .-.|...+++...-+.-.
T Consensus       115 stPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV  148 (182)
T COG2143         115 STPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV  148 (182)
T ss_pred             cCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence            9999999964 5655 458988888766554433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.81  E-value=5.4e-08  Score=101.94  Aligned_cols=90  Identities=17%  Similarity=0.299  Sum_probs=73.7

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC---------------------------ccchhhhh
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA---------------------------DKYSRLAS  111 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~---------------------------~~~~~l~~  111 (363)
                      ++++++|.|||+||++|++..|.++++.+++++.  .+.+..|.+                           +.+..+.+
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~  496 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR  496 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence            4689999999999999999999999999988653  366665532                           23446778


Q ss_pred             hCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          112 KQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       112 ~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +|+|.++|+++++ ++|+.+ .+.|....+.+.+++...+.
T Consensus       497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence            8999999999999 578765 47899999999999988753

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.78  E-value=8.9e-08  Score=79.27  Aligned_cols=80  Identities=11%  Similarity=0.028  Sum_probs=58.2

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEE------EEEeCc----------------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVI------AKVDAD----------------------------  104 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~------~~vd~~----------------------------  104 (363)
                      .++..+|.|||.||+.|+..+|.+.+++..    +  +.+      ..||.+                            
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll  131 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----K--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL  131 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHc----C--CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence            479999999999999999999999999642    1  222      233322                            


Q ss_pred             -cchhhhhhCCcCcCCEE-EEEe-CCEEE-eecCCCCHHHHHHH
Q 017971          105 -KYSRLASKQEIDAFPTL-KIFM-HGIPT-EYYGPRKAELLVRY  144 (363)
Q Consensus       105 -~~~~l~~~~~i~~~Pt~-~~~~-~g~~~-~y~g~~~~~~i~~~  144 (363)
                       .+..+...|++.+.|+- +++. +|+.. .+.|..+.+++.+.
T Consensus       132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~  175 (184)
T TIGR01626       132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV  175 (184)
T ss_pred             CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence             23346678899999777 5664 56654 47899988887663

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.77  E-value=3.6e-08  Score=71.13  Aligned_cols=70  Identities=31%  Similarity=0.488  Sum_probs=52.8

Q ss_pred             hHHHhHcCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe
Q 017971           52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM  125 (363)
Q Consensus        52 ~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  125 (363)
                      .+.++.+++++++|.|+++||+.|+.+...+   .++.+.+.+   ++....+|.++.....+ +...++|+++++.
T Consensus         9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld   81 (82)
T PF13899_consen    9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD   81 (82)
T ss_dssp             HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred             HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence            3455567889999999999999999999887   344443444   39999999987665432 2227799999875

...

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=6.3e-08  Score=84.23  Aligned_cols=116  Identities=16%  Similarity=0.240  Sum_probs=93.3

Q ss_pred             cCCCCCeEEcChhhHHHhHcCCC---eEEEEEECC----CChhhhhHHHHHHHHHHHhhcCC-----CCeEEEEEeCccc
Q 017971           39 FKIDGKVIELDESNFDSAISSFD---YILVDFYAP----WCGHCKRLAPQLDEAAPILAKLK-----EPIVIAKVDADKY  106 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~~~---~~lv~fy~~----~C~~C~~~~~~~~~~a~~~~~~~-----~~v~~~~vd~~~~  106 (363)
                      .+.+..|+.+|+++|.+++..+.   ..+|+|.|.    .|.-|+.+..++.-+|+.+...+     .++-|+.||.++.
T Consensus        36 ~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~  115 (331)
T KOG2603|consen   36 WTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES  115 (331)
T ss_pred             ccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc
Confidence            47789999999999999996432   567888885    59999999999999998876432     3789999999999


Q ss_pred             hhhhhhCCcCcCCEEEEEeCC--EEE---e---ecCCCCHHHHHHHHHhhcCCCce
Q 017971          107 SRLASKQEIDAFPTLKIFMHG--IPT---E---YYGPRKAELLVRYLKKFVAPDVS  154 (363)
Q Consensus       107 ~~l~~~~~i~~~Pt~~~~~~g--~~~---~---y~g~~~~~~i~~~i~~~~~~~v~  154 (363)
                      +++.+.++++..|++++|.+.  ++.   .   ++-...+|++.+|+.+.+.-.+.
T Consensus       116 p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~  171 (331)
T KOG2603|consen  116 PQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR  171 (331)
T ss_pred             HHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence            999999999999999999543  221   1   22234499999999998875554

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.74  E-value=3.2e-08  Score=76.27  Aligned_cols=60  Identities=25%  Similarity=0.417  Sum_probs=42.9

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEE---eCccchhhhhhCCcCcCCEE
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV---DADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~v---d~~~~~~l~~~~~i~~~Pt~  121 (363)
                      ++++++|.||++||++|++..|.++++++.+.+.   +.+..+   +.++...+++++++..+|++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~~~~~~~~~~~~~~~~~~~~p~~   82 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLASDGEKAEHQRFLKKHGLEAFPYV   82 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence            4689999999999999999999999998776432   444444   22233456666666666654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.68  E-value=3.1e-07  Score=79.46  Aligned_cols=90  Identities=13%  Similarity=0.089  Sum_probs=65.8

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------c----hhhh-hhCC------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------Y----SRLA-SKQE------------  114 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~~~------------  114 (363)
                      ++++++|.||++||+.|+...|.+.++.+++++.+  +.+..|+|+.       .    .+++ ++++            
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~  175 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVN  175 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCC
Confidence            46899999999999999999999999999887543  8888888741       1    1222 2222            


Q ss_pred             ----------------------cCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          115 ----------------------IDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       115 ----------------------i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                                            +...|+.+++ ++|+.+ .|.|..+.++|.+.|++.+.
T Consensus       176 G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        176 GPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             cchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence                                  1224677777 456665 48899999999888887653

>smart00594 UAS UAS domain

Probab=98.67  E-value=1.4e-07  Score=73.52  Aligned_cols=87  Identities=15%  Similarity=0.167  Sum_probs=65.9

Q ss_pred             hHcCCCeEEEEEECCCChhhhhHHHHH-H--HHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCcCcCCEEEEEeC-C--
Q 017971           56 AISSFDYILVDFYAPWCGHCKRLAPQL-D--EAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFMH-G--  127 (363)
Q Consensus        56 ~l~~~~~~lv~fy~~~C~~C~~~~~~~-~--~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~-g--  127 (363)
                      +.+++++.+|+|+++||+.|+.+.... .  ++.+.+++   ++.+..+|.+  +..+++..|++.++|++.++.. |  
T Consensus        23 Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~   99 (122)
T smart00594       23 ASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQ   99 (122)
T ss_pred             HHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCc
Confidence            336678999999999999999988763 2  23344433   4888777765  4567899999999999999953 3  


Q ss_pred             E---EE-eecCCCCHHHHHHHH
Q 017971          128 I---PT-EYYGPRKAELLVRYL  145 (363)
Q Consensus       128 ~---~~-~y~g~~~~~~i~~~i  145 (363)
                      .   .+ ...|..+++++++++
T Consensus       100 ~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      100 RVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             eeEEEeccccCCCCHHHHHHhh
Confidence            1   22 478999999998875

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.64  E-value=1e-07  Score=74.04  Aligned_cols=73  Identities=12%  Similarity=0.103  Sum_probs=47.1

Q ss_pred             HHHhHcCCCeEEEEEECCCChhhhhHHHHHHH---HHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe-CCE
Q 017971           53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDE---AAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM-HGI  128 (363)
Q Consensus        53 f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~---~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~-~g~  128 (363)
                      ++.+.+++++++|.||++||++|+++....-+   +.+.+++   ++....++.+....-....+ .++||++++. +|+
T Consensus        16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~   91 (130)
T cd02960          16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLT   91 (130)
T ss_pred             HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCC
Confidence            34444788999999999999999999987532   3333322   36655666542211111233 7899999995 454


Q ss_pred             E
Q 017971          129 P  129 (363)
Q Consensus       129 ~  129 (363)
                      .
T Consensus        92 v   92 (130)
T cd02960          92 V   92 (130)
T ss_pred             C
Confidence            3

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.58  E-value=5.1e-07  Score=76.63  Aligned_cols=63  Identities=14%  Similarity=0.263  Sum_probs=46.7

Q ss_pred             CccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           33 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        33 ~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      .++....+.++..+.|++  +     ++++++|.||++||+.|++..|.+.++.+.+.+.+  +.+..|+|+
T Consensus        19 ~pdf~l~d~~G~~vsL~~--~-----kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~   81 (199)
T PTZ00056         19 IYDYTVKTLEGTTVPMSS--L-----KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTS   81 (199)
T ss_pred             CCceEEECCCCCEEeHHH--h-----CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecch
Confidence            344444444555444432  2     46899999999999999999999999999887543  888888873

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.56  E-value=4.8e-07  Score=72.98  Aligned_cols=98  Identities=23%  Similarity=0.399  Sum_probs=66.8

Q ss_pred             CCCCccccccC--CCCCeEEcChhhHHHhHcCCCeEEEEEECC-CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc--
Q 017971           30 GLSSEEETKFK--IDGKVIELDESNFDSAISSFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--  104 (363)
Q Consensus        30 ~~~~~~~~~~~--~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--  104 (363)
                      |...|+.....  .++..+.+++-       ++++++|.||++ ||++|+...|.+.++.+.++..+  +.+..|..+  
T Consensus         3 G~~~P~~~~~~~~~~g~~~~l~~~-------~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~   73 (146)
T PF08534_consen    3 GDKAPDFSLKDLDLDGKPVSLSDF-------KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDD   73 (146)
T ss_dssp             TSB--CCEEEEEETTSEEEEGGGG-------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSS
T ss_pred             CCCCCCeEEEeecCCCCEecHHHh-------CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCC
Confidence            33444444432  55556666552       678999999999 99999999999999988876554  555555433  


Q ss_pred             -------------------cchhhhhhCCcC---------cCCEEEEEe-CCEEEe-ecCCC
Q 017971          105 -------------------KYSRLASKQEID---------AFPTLKIFM-HGIPTE-YYGPR  136 (363)
Q Consensus       105 -------------------~~~~l~~~~~i~---------~~Pt~~~~~-~g~~~~-y~g~~  136 (363)
                                         .+..+.++|++.         ++|+++++. +|+... ..|..
T Consensus        74 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~  135 (146)
T PF08534_consen   74 PPVREFLKKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPD  135 (146)
T ss_dssp             HHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred             HHHHHHHHhhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence                               334678889988         999998886 454432 44543

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.54  E-value=4.5e-07  Score=71.22  Aligned_cols=74  Identities=18%  Similarity=0.241  Sum_probs=56.2

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------------------------cchhhhh
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------------------------KYSRLAS  111 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------------------------~~~~l~~  111 (363)
                      ++++++|.||++||+.|++..|.+.++.+++++.  ++.+..|+..                           ....+.+
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~   99 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR   99 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence            4589999999999999999999999999988753  3666666541                           1234667


Q ss_pred             hCCcCcCCEEEEEe-CCEEE-eecC
Q 017971          112 KQEIDAFPTLKIFM-HGIPT-EYYG  134 (363)
Q Consensus       112 ~~~i~~~Pt~~~~~-~g~~~-~y~g  134 (363)
                      .|++.++|+.+++. +|+.. .+.|
T Consensus       100 ~~~v~~~P~~~vid~~G~v~~~~~G  124 (126)
T cd03012         100 AYGNQYWPALYLIDPTGNVRHVHFG  124 (126)
T ss_pred             HhCCCcCCeEEEECCCCcEEEEEec
Confidence            78999999999995 55543 2444

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.52  E-value=7.3e-07  Score=67.05  Aligned_cols=99  Identities=11%  Similarity=0.078  Sum_probs=79.6

Q ss_pred             CCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          253 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      |.+.++|..++......++++++.|+. ......+.+...+.++|+++++ +.|+.+|+++++.+++.+++   ...|++
T Consensus         1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a-~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~   76 (101)
T cd03003           1 PEIVTLDRGDFDAAVNSGEIWFVNFYS-PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV---NSYPSL   76 (101)
T ss_pred             CCeEEcCHhhHHHHhcCCCeEEEEEEC-CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC---CccCEE
Confidence            456788888998877666777766664 4667778899999999999987 89999999999999999999   689999


Q ss_pred             EEEeCCCCeeEEEEEEeehhhhhH
Q 017971          332 VVWDGNENYLTVSINVLKTRVCFF  355 (363)
Q Consensus       332 vi~~~~~~y~~~~~~~~~~~~~~~  355 (363)
                      +++..........|....+.+..|
T Consensus        77 ~~~~~g~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          77 YVFPSGMNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             EEEcCCCCcccCCCCCCHHHHHhh
Confidence            999655456667777777776665

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PLN02412 probable glutathione peroxidase

Probab=98.51  E-value=1.8e-06  Score=71.35  Aligned_cols=109  Identities=13%  Similarity=0.114  Sum_probs=72.1

Q ss_pred             CccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------
Q 017971           33 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------  105 (363)
Q Consensus        33 ~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------  105 (363)
                      .|+....+.++..+.|+  ++     .+++++|.||++||+.|++..|.+.++.+++++.+  +.+..|+|+.       
T Consensus         9 ~pdf~l~d~~G~~v~l~--~~-----~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~   79 (167)
T PLN02412          9 IYDFTVKDIGGNDVSLN--QY-----KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPG   79 (167)
T ss_pred             CCceEEECCCCCEEeHH--Hh-----CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCC
Confidence            34444444455444443  22     45899999999999999999999999999987653  8888887742       


Q ss_pred             c-hhh----hhhCC----------------------------------cCcCCEEEEE-eCCEEE-eecCCCCHHHHHHH
Q 017971          106 Y-SRL----ASKQE----------------------------------IDAFPTLKIF-MHGIPT-EYYGPRKAELLVRY  144 (363)
Q Consensus       106 ~-~~l----~~~~~----------------------------------i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~  144 (363)
                      . .++    +++++                                  +.+.|+.+++ ++|+.+ .+.|..+.+.+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~  159 (167)
T PLN02412         80 SNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKD  159 (167)
T ss_pred             CHHHHHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHH
Confidence            1 121    23322                                  2234666666 456555 37788888888888


Q ss_pred             HHhhcC
Q 017971          145 LKKFVA  150 (363)
Q Consensus       145 i~~~~~  150 (363)
                      |+..+.
T Consensus       160 i~~~l~  165 (167)
T PLN02412        160 IQNLLG  165 (167)
T ss_pred             HHHHHh
Confidence            777653

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.51  E-value=2.9e-06  Score=70.40  Aligned_cols=91  Identities=16%  Similarity=0.213  Sum_probs=66.5

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-----------------------------chhh
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----------------------------~~~l  109 (363)
                      ++++++|.||++||+.|....+.+.++.+++.+.  ++.+..|.++.                             +..+
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~  101 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV  101 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence            5689999999999999999999999999988643  37777777643                             2245


Q ss_pred             hhhCCcCcCCEEEEEeCCEEEeecC-----------CCCHHHHHHHHHhhcCC
Q 017971          110 ASKQEIDAFPTLKIFMHGIPTEYYG-----------PRKAELLVRYLKKFVAP  151 (363)
Q Consensus       110 ~~~~~i~~~Pt~~~~~~g~~~~y~g-----------~~~~~~i~~~i~~~~~~  151 (363)
                      ++.|++...|+++++..+..+.|.|           ..+.+++.+-|...+..
T Consensus       102 ~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  154 (171)
T cd02969         102 AKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG  154 (171)
T ss_pred             HHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence            6788999999999996443444443           23446666666555543

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.50  E-value=7.6e-07  Score=62.46  Aligned_cols=69  Identities=23%  Similarity=0.361  Sum_probs=52.8

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCcCcCCEEEEEeCCEEEeecCCCCHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTLKIFMHGIPTEYYGPRKAE  139 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~  139 (363)
                      +..|+++||++|++..+.+.+.         ++.+..+|.++++.    +++.+++.++|++.+.  |+.  ..| .+.+
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g-~~~~   67 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVG-FDPE   67 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--Eee-CCHH
Confidence            5679999999999998877641         27788899987654    5667999999999985  543  445 4678


Q ss_pred             HHHHHHH
Q 017971          140 LLVRYLK  146 (363)
Q Consensus       140 ~i~~~i~  146 (363)
                      .|.+|++
T Consensus        68 ~i~~~i~   74 (74)
T TIGR02196        68 KLDQLLE   74 (74)
T ss_pred             HHHHHhC
Confidence            8887763

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.49  E-value=2e-06  Score=64.66  Aligned_cols=98  Identities=7%  Similarity=0.184  Sum_probs=84.1

Q ss_pred             ccCChhhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          256 VPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       256 ~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      ..+|.+++...... ++++++.|+ .......+.+...+.++++.+++ +.|+.+|+...+.+++.+++   ...|++++
T Consensus         2 ~~lt~~~f~~~i~~~~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~~   77 (103)
T PF00085_consen    2 IVLTDENFEKFINESDKPVVVYFY-APWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGV---KSVPTIIF   77 (103)
T ss_dssp             EEESTTTHHHHHTTTSSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTC---SSSSEEEE
T ss_pred             EECCHHHHHHHHHccCCCEEEEEe-CCCCCccccccceecccccccccccccchhhhhccchhhhccCC---CCCCEEEE
Confidence            46788888886665 666766666 45788889999999999999994 99999999999999999999   78999999


Q ss_pred             EeCCCCeeEEEEEEeehhhhhHhh
Q 017971          334 WDGNENYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       334 ~~~~~~y~~~~~~~~~~~~~~~~~  357 (363)
                      ++.++......+....+.+..|+.
T Consensus        78 ~~~g~~~~~~~g~~~~~~l~~~i~  101 (103)
T PF00085_consen   78 FKNGKEVKRYNGPRNAESLIEFIE  101 (103)
T ss_dssp             EETTEEEEEEESSSSHHHHHHHHH
T ss_pred             EECCcEEEEEECCCCHHHHHHHHH
Confidence            999887778889999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.47  E-value=1.6e-06  Score=65.47  Aligned_cols=100  Identities=15%  Similarity=0.223  Sum_probs=78.7

Q ss_pred             CCcccCChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          253 PLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       253 p~~~~lt~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      |.+.+++..+++... ..++++++.|+ .......+.+...+.+++.++++ +.|+.+|++.++.+++.+|+   ...|+
T Consensus         1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i---~~~Pt   76 (104)
T cd03004           1 PSVITLTPEDFPELVLNRKEPWLVDFY-APWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANI---RAYPT   76 (104)
T ss_pred             CcceEcCHHHHHHHHhcCCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCC---CcccE
Confidence            346678888888754 44556666665 44677788899999999999877 99999999999999999999   68999


Q ss_pred             EEEEeCC-CCeeEEEEEEe-ehhhhhHh
Q 017971          331 MVVWDGN-ENYLTVSINVL-KTRVCFFM  356 (363)
Q Consensus       331 ~vi~~~~-~~y~~~~~~~~-~~~~~~~~  356 (363)
                      +++++.+ +......|... .+.+..|+
T Consensus        77 ~~~~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          77 IRLYPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence            9999987 56667777665 66666653

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.46  E-value=1.6e-06  Score=67.65  Aligned_cols=93  Identities=20%  Similarity=0.344  Sum_probs=68.6

Q ss_pred             CCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECC-CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-----
Q 017971           31 LSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----  104 (363)
Q Consensus        31 ~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----  104 (363)
                      ...|+....+.++..+.|++-       .+++++|.||+. ||++|+...+.+.++.+.++..+  +.+..|..+     
T Consensus         3 ~~~P~f~l~~~~g~~~~l~~l-------~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~~~~   73 (124)
T PF00578_consen    3 DKAPDFTLTDSDGKTVSLSDL-------KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDPEEI   73 (124)
T ss_dssp             SBGGCEEEETTTSEEEEGGGG-------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSHHHH
T ss_pred             CCCCCcEeECCCCCEEEHHHH-------CCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccccccch
Confidence            344555555555555666433       558999999999 99999999999999999887543  777777654     


Q ss_pred             ----------------cchhhhhhCCcC------cCCEEEEEeCCEEEee
Q 017971          105 ----------------KYSRLASKQEID------AFPTLKIFMHGIPTEY  132 (363)
Q Consensus       105 ----------------~~~~l~~~~~i~------~~Pt~~~~~~g~~~~y  132 (363)
                                      .+..+++.|++.      .+|+.+++..+..+.|
T Consensus        74 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~  123 (124)
T PF00578_consen   74 KQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY  123 (124)
T ss_dssp             HHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred             hhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence                            234577778888      8899998877655554

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.43  E-value=2.2e-06  Score=64.56  Aligned_cols=99  Identities=11%  Similarity=0.087  Sum_probs=79.4

Q ss_pred             cccCChhhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          255 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      +.+++..++...... +.++++.|+ .......+++...+.+++.++++ +.|+.+|++.++.+++.+++   .+.|+++
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i---~~~P~~~   77 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFY-APWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV---RGFPTIK   77 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC---CccCEEE
Confidence            346777888875444 444555555 55677788889999999998877 99999999999999999999   6799999


Q ss_pred             EEeCC-CCeeEEEEEEeehhhhhHhh
Q 017971          333 VWDGN-ENYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       333 i~~~~-~~y~~~~~~~~~~~~~~~~~  357 (363)
                      +++.+ ......++....+.+..||+
T Consensus        78 ~~~~~~~~~~~~~g~~~~~~l~~~~~  103 (103)
T cd03001          78 VFGAGKNSPQDYQGGRTAKAIVSAAL  103 (103)
T ss_pred             EECCCCcceeecCCCCCHHHHHHHhC
Confidence            99877 56778888899998988874

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.37  E-value=1.5e-06  Score=58.62  Aligned_cols=60  Identities=38%  Similarity=0.741  Sum_probs=51.1

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh---hCCcCcCCEEEEEeCC
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS---KQEIDAFPTLKIFMHG  127 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Pt~~~~~~g  127 (363)
                      ++.||++||++|++..+.+.++ +.   ...++.+..+|++.......   .+++.++|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-AL---LNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-Hh---hCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4789999999999999999988 22   23359999999999887765   8899999999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.35  E-value=2.2e-06  Score=65.59  Aligned_cols=68  Identities=34%  Similarity=0.623  Sum_probs=60.7

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhhhCC--cCcCCEEEEEeCCEEE
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQE--IDAFPTLKIFMHGIPT  130 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~Pt~~~~~~g~~~  130 (363)
                      ++++++.||++||++|+...|.+.++++.+..   .+.+..+|.. .++.+...++  +..+|++.++.++...
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  102 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV  102 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence            67999999999999999999999999988765   4889999997 7899999999  9999999988887654

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.32  E-value=7.7e-06  Score=72.10  Aligned_cols=102  Identities=24%  Similarity=0.363  Sum_probs=73.6

Q ss_pred             CCCeEEcC-hhhHHHhHcC---CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           42 DGKVIELD-ESNFDSAISS---FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        42 ~~~v~~l~-~~~f~~~l~~---~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      -+.|.+++ .+.|-+.+++   ...++|.||.+.++.|+.+...+..+|..+..    +.|.+|..+..+ ++..|.+..
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~-~~~~f~~~~  198 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP-ASENFPDKN  198 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC-TTTTS-TTC
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC-cccCCcccC
Confidence            36788996 4788888843   34689999999999999999999999987654    999999987765 788999999


Q ss_pred             CCEEEEEeCCEEEe-ecC-------CCCHHHHHHHHHhh
Q 017971          118 FPTLKIFMHGIPTE-YYG-------PRKAELLVRYLKKF  148 (363)
Q Consensus       118 ~Pt~~~~~~g~~~~-y~g-------~~~~~~i~~~i~~~  148 (363)
                      .|++++|++|..+. +.|       ..+.++|..|+.++
T Consensus       199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            99999999997653 332       34556666666655

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.31  E-value=6.3e-06  Score=58.36  Aligned_cols=73  Identities=27%  Similarity=0.492  Sum_probs=55.9

Q ss_pred             EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecC-CCCHHHHHH
Q 017971           65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYG-PRKAELLVR  143 (363)
Q Consensus        65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g-~~~~~~i~~  143 (363)
                      |.+++++|++|..+...+++++..+.     +.+-.+|..+.+++ .+|||.+.|++++  +|+ +.+.| ..+.+.|.+
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~-~~~~G~~p~~~el~~   73 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK-VVFVGRVPSKEELKE   73 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE-EEEESS--HHHHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE-EEEEecCCCHHHHHH
Confidence            44578899999999999999987652     66677777666777 9999999999965  564 56888 777888888


Q ss_pred             HHH
Q 017971          144 YLK  146 (363)
Q Consensus       144 ~i~  146 (363)
                      |+.
T Consensus        74 ~l~   76 (76)
T PF13192_consen   74 LLE   76 (76)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            874

...

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=98.28  E-value=3.2e-06  Score=63.88  Aligned_cols=91  Identities=23%  Similarity=0.350  Sum_probs=70.4

Q ss_pred             ceecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcC-
Q 017971          153 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQP-  226 (363)
Q Consensus       153 v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~-  226 (363)
                      +.++++..++++++..++   +.+|||+.+.     ..+..+|..+++.+.|++  +.+..+.+.+++  .|.+++|++ 
T Consensus         2 ~~~i~s~~~l~~f~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~--~~~~~~~~~~~~--~~~ivl~~p~   74 (104)
T cd03069           2 SVELRTEAEFEKFLSDDD---ASVVGFFEDEDSKLLSEFLKAADTLRESFRFAH--TSDKQLLEKYGY--GEGVVLFRPP   74 (104)
T ss_pred             ccccCCHHHHHHHhccCC---cEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEE--EChHHHHHhcCC--CCceEEEech
Confidence            567888889999998665   5888888542     458889999988887765  445677788888  588999954 


Q ss_pred             -----CCCCcccccCCCCHHHHHHHHHhh
Q 017971          227 -----SYNEHNIFYGPFDEEFLEEFIKQN  250 (363)
Q Consensus       227 -----~~~~~~~~~g~~~~~~l~~fi~~~  250 (363)
                           .++....|.|+++.++|.+||..+
T Consensus        75 ~~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          75 RLSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             hhhcccCcccccccCcCCHHHHHHHHHhh
Confidence                 234556799999999999999875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.27  E-value=5.6e-06  Score=67.27  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=36.7

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      ++++++|.||++||+ |+...|.+.++.+++++.  ++.+..|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccC
Confidence            468999999999999 999999999999988654  3888778763

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.27  E-value=7.4e-06  Score=61.87  Aligned_cols=95  Identities=13%  Similarity=0.039  Sum_probs=77.2

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeCC-ChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      .++++|..|++.....+.++++.|..+- .......+...+.++|+++++ +.|+.+|.++++.++..|++   ...|++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V---~sIPTl   87 (111)
T cd02965          11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGV---LRTPAL   87 (111)
T ss_pred             CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCC---CcCCEE
Confidence            4678888999987777778877776442 577788899999999999998 88999999999999999999   789999


Q ss_pred             EEEeCCCCeeEEEEEEeehh
Q 017971          332 VVWDGNENYLTVSINVLKTR  351 (363)
Q Consensus       332 vi~~~~~~y~~~~~~~~~~~  351 (363)
                      ++++.........|.+.+.+
T Consensus        88 i~fkdGk~v~~~~G~~~~~e  107 (111)
T cd02965          88 LFFRDGRYVGVLAGIRDWDE  107 (111)
T ss_pred             EEEECCEEEEEEeCccCHHH
Confidence            99997755556566555443

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.27  E-value=4.3e-06  Score=59.27  Aligned_cols=69  Identities=23%  Similarity=0.361  Sum_probs=48.0

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh-----CCcCcCCEEEEEeCCEEEeecCCCCH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK-----QEIDAFPTLKIFMHGIPTEYYGPRKA  138 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~-----~~i~~~Pt~~~~~~g~~~~y~g~~~~  138 (363)
                      ++.|+++||++|++..+.+.+..         +.+-.+|.++++.....     +++.++|++ ++.+|..+.   ..+.
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~   68 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSA   68 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC---------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCH
Confidence            57899999999999999876542         44567888877766555     388999997 467775432   3334


Q ss_pred             HHHHHHH
Q 017971          139 ELLVRYL  145 (363)
Q Consensus       139 ~~i~~~i  145 (363)
                      .++.+.+
T Consensus        69 ~~~~~~l   75 (77)
T TIGR02200        69 AQVKAKL   75 (77)
T ss_pred             HHHHHHh
Confidence            4444443

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.26  E-value=9.3e-06  Score=69.58  Aligned_cols=84  Identities=19%  Similarity=0.194  Sum_probs=65.6

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------cchhhhhhCCcCcCCEEEEEeCCE-
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------KYSRLASKQEIDAFPTLKIFMHGI-  128 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------~~~~l~~~~~i~~~Pt~~~~~~g~-  128 (363)
                      .++..|+.||.+.|++|+.+.|.+..+++.+   +-.|....+|..         .++.++++++|..+|++++...+. 
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~  195 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK  195 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence            4579999999999999999999999999876   222444444432         467899999999999999997643 


Q ss_pred             -EEe-ecCCCCHHHHHHHH
Q 017971          129 -PTE-YYGPRKAELLVRYL  145 (363)
Q Consensus       129 -~~~-y~g~~~~~~i~~~i  145 (363)
                       ... -.|..+.++|.+-|
T Consensus       196 ~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  196 KWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             eEEEEeeecCCHHHHHHhh
Confidence             333 57999998887643

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.26  E-value=4.1e-06  Score=63.04  Aligned_cols=94  Identities=19%  Similarity=0.292  Sum_probs=72.5

Q ss_pred             CceecCChHHHHHHHH-hcCCcccEEEeecCC--h---hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEc
Q 017971          152 DVSILNSDAEVSDFVE-NAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQ  225 (363)
Q Consensus       152 ~v~~i~~~~~~~~~~~-~~~~~~~~~v~~~~~--~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~  225 (363)
                      ++..|++..++++++. +++   +.+|||+.+  +   ..+.++|..+++.+.|++  ..+.++...+++. .|.+++++
T Consensus         1 ~v~~i~~~~~~e~~~~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~--~~~~~~~~~~~~~-~~~i~l~~   74 (102)
T cd03066           1 PVEIINSERELQAFENIEDD---IKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFA--TFDSKVAKKLGLK-MNEVDFYE   74 (102)
T ss_pred             CceEcCCHHHHHHHhcccCC---eEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEE--ECcHHHHHHcCCC-CCcEEEeC
Confidence            3567888889999997 665   578888854  2   358889999988887765  4456777778776 58888887


Q ss_pred             CCCCCcccc-cCCCCHHHHHHHHHhhc
Q 017971          226 PSYNEHNIF-YGPFDEEFLEEFIKQNF  251 (363)
Q Consensus       226 ~~~~~~~~~-~g~~~~~~l~~fi~~~~  251 (363)
                      +.++....| .|..+.+.|.+||..+.
T Consensus        75 ~~~e~~~~y~~g~~~~~~l~~fi~~~~  101 (102)
T cd03066          75 PFMEEPVTIPDKPYSEEELVDFVEEHK  101 (102)
T ss_pred             CCCCCCcccCCCCCCHHHHHHHHHHhc
Confidence            755666678 78889999999998763

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.25  E-value=3.8e-06  Score=62.60  Aligned_cols=91  Identities=25%  Similarity=0.356  Sum_probs=70.8

Q ss_pred             eecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCC
Q 017971          154 SILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSY  228 (363)
Q Consensus       154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~  228 (363)
                      .++++..++++++...+   +++|+|+.+.     ..+..+|..+++...|+..  .+.++.+.+++. .|++++|++.+
T Consensus         2 ~~i~s~~~l~~~~~~~~---~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~--~~~~~~~~~~~~-~~~i~l~~~~~   75 (97)
T cd02981           2 KELTSKEELEKFLDKDD---VVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHT--SDKEVAKKLKVK-PGSVVLFKPFE   75 (97)
T ss_pred             eecCCHHHHHHHhccCC---eEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEE--ChHHHHHHcCCC-CCceEEeCCcc
Confidence            46778888988887665   6888888542     3588899999887666543  356777777776 48899999877


Q ss_pred             CCcccccCCCCHHHHHHHHHhh
Q 017971          229 NEHNIFYGPFDEEFLEEFIKQN  250 (363)
Q Consensus       229 ~~~~~~~g~~~~~~l~~fi~~~  250 (363)
                      +....|.|.++.++|.+||..+
T Consensus        76 ~~~~~y~g~~~~~~l~~fi~~~   97 (97)
T cd02981          76 EEPVEYDGEFTEESLVEFIKDN   97 (97)
T ss_pred             cCCccCCCCCCHHHHHHHHHhC
Confidence            7778899999999999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.25  E-value=1.1e-05  Score=60.16  Aligned_cols=88  Identities=18%  Similarity=0.274  Sum_probs=71.1

Q ss_pred             hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC--C
Q 017971           50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH--G  127 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~--g  127 (363)
                      .+.+++++...++++|-|+.++|+   .....|.++|+.+++.   +.|+.+.   ++++.+++++.. |++.+|++  .
T Consensus         7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~---~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~   76 (97)
T cd02981           7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDD---YGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEE   76 (97)
T ss_pred             HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccC---CeEEEEC---hHHHHHHcCCCC-CceEEeCCccc
Confidence            344666788889999999999987   6788999999887653   8888877   567788887754 99999976  3


Q ss_pred             EEEeecCCCCHHHHHHHHHh
Q 017971          128 IPTEYYGPRKAELLVRYLKK  147 (363)
Q Consensus       128 ~~~~y~g~~~~~~i~~~i~~  147 (363)
                      ....|.|..+.+.|.+|+..
T Consensus        77 ~~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          77 EPVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             CCccCCCCCCHHHHHHHHHh
Confidence            45679999999999999874

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.23  E-value=1.9e-05  Score=64.19  Aligned_cols=43  Identities=19%  Similarity=0.064  Sum_probs=37.8

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA  103 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~  103 (363)
                      ++++++|.||++||+.|++..|.+.++.+++...  ++.+..++|
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~   63 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPC   63 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEec
Confidence            5688999999999999999999999999998754  388888887

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.23  E-value=2.9e-05  Score=76.69  Aligned_cols=177  Identities=16%  Similarity=0.163  Sum_probs=117.7

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe-CCE--EEeecCCC
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM-HGI--PTEYYGPR  136 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~-~g~--~~~y~g~~  136 (363)
                      ++..++.|+.+.|..|..+...+++++..    .+++.+-..|..++.+++++|++...|++.++. +|+  .++|.|-.
T Consensus       366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~~----s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P  441 (555)
T TIGR03143       366 NPVTLLLFLDGSNEKSAELQSFLGEFASL----SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVP  441 (555)
T ss_pred             CCEEEEEEECCCchhhHHHHHHHHHHHhc----CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecC
Confidence            35578889999999999988888888743    345888889999999999999999999999995 553  47899988


Q ss_pred             CHHHHHHHHHhhcCCC--ceecCChHHHHHHHHhcCCcccEEEeec---CChhH----HHHHHHHhhhhhHHHHhhhcch
Q 017971          137 KAELLVRYLKKFVAPD--VSILNSDAEVSDFVENAGTFFPLFIGFG---LDESV----MSNLALKYKKKAWFAVAKDFSE  207 (363)
Q Consensus       137 ~~~~i~~~i~~~~~~~--v~~i~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~----~~~~a~~~~~~~~~~~~~~~~~  207 (363)
                      .-.++..|+.....-+  -..+ +++ ..+.+..-+...-+-++..   +..+.    ...++....+...-.+.....+
T Consensus       442 ~G~Ef~s~i~~i~~~~~~~~~l-~~~-~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~  519 (555)
T TIGR03143       442 SGHELNSFILALYNAAGPGQPL-GEE-LLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP  519 (555)
T ss_pred             ccHhHHHHHHHHHHhcCCCCCC-CHH-HHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccH
Confidence            8888888887775432  2233 333 4444444322111112222   23222    3334433321110001123457


Q ss_pred             hhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHH
Q 017971          208 DTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI  247 (363)
Q Consensus       208 ~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi  247 (363)
                      +++..|++.+.|++++     +....+.|..+.+++.+|+
T Consensus       520 ~~~~~~~v~~vP~~~i-----~~~~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       520 DLKDEYGIMSVPAIVV-----DDQQVYFGKKTIEEMLELI  554 (555)
T ss_pred             HHHHhCCceecCEEEE-----CCEEEEeeCCCHHHHHHhh
Confidence            7888999999999877     4446677988999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.19  E-value=1.5e-05  Score=59.75  Aligned_cols=98  Identities=10%  Similarity=0.127  Sum_probs=78.1

Q ss_pred             CChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchhHHhhcCCCCCCCCCeEEEE
Q 017971          258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPKMVVW  334 (363)
Q Consensus       258 lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~  334 (363)
                      |+..++......++++++.|+. ......+.+...+.+++..+++   +.++.+|++..+.+++.+++   ...|+++++
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~-~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i---~~~P~~~~~   76 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYA-PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGV---SGFPTIKFF   76 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEEC-CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCC---CcCCEEEEe
Confidence            4566777766666666666664 4667777778888888887764   99999999999999999999   679999999


Q ss_pred             eCCCCeeEEEEEEeehhhhhHhhhh
Q 017971          335 DGNENYLTVSINVLKTRVCFFMLTL  359 (363)
Q Consensus       335 ~~~~~y~~~~~~~~~~~~~~~~~~~  359 (363)
                      ++++......+....+.++.|+...
T Consensus        77 ~~~~~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        77 PKGKKPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             cCCCcceeecCCCCHHHHHHHHHhc
Confidence            9988777788888888888888654

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.19  E-value=1.9e-05  Score=60.41  Aligned_cols=100  Identities=8%  Similarity=0.036  Sum_probs=77.7

Q ss_pred             CCcccCChhhHHhh---hcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHH-hhcCCCCCCC
Q 017971          253 PLSVPINQDTLNLL---KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFA-DTFEANKKSK  327 (363)
Q Consensus       253 p~~~~lt~~~~~~l---~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~-~~~gi~~~~~  327 (363)
                      +.+.+++.+++...   ...+.++++.|+ ..-....+.+...+.++|+++++ +.|+.||++.++..+ +.+++   .+
T Consensus         9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I---~~   84 (113)
T cd03006           9 SPVLDFYKGQLDYAEELRTDAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF---FY   84 (113)
T ss_pred             CCeEEechhhhHHHHhcccCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC---cc
Confidence            44668888898876   455566666666 34667778889999999999988 999999999888888 58998   67


Q ss_pred             CCeEEEEeCCCCeeEEEEEEeehhhhhHh
Q 017971          328 LPKMVVWDGNENYLTVSINVLKTRVCFFM  356 (363)
Q Consensus       328 ~P~~vi~~~~~~y~~~~~~~~~~~~~~~~  356 (363)
                      .|++.++...+.-....+...++.+..||
T Consensus        85 ~PTl~lf~~g~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          85 FPVIHLYYRSRGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             cCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence            99999997654455666777777777654

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.18  E-value=1.4e-05  Score=60.90  Aligned_cols=99  Identities=8%  Similarity=0.086  Sum_probs=77.3

Q ss_pred             cccCChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC--chhHHhhcCCCCCCCCCe
Q 017971          255 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPK  330 (363)
Q Consensus       255 ~~~lt~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P~  330 (363)
                      +.+++..++.... ..+.++++.|+ .......+.+...+.++|+.+++ +.|+.+|+++  .+.+++.+++   ...|+
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i---~~~Pt   77 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV---QGFPT   77 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC---CcCCE
Confidence            4577888888754 44555666665 44677778888899999998887 8899999988  7889999999   67999


Q ss_pred             EEEEeCCC-----CeeEEEEEEeehhhhhHhh
Q 017971          331 MVVWDGNE-----NYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       331 ~vi~~~~~-----~y~~~~~~~~~~~~~~~~~  357 (363)
                      ++++++++     .-+...|....+.+..|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             EEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence            99999886     3456678888888888764

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>TIGR01068 thioredoxin thioredoxin

Probab=98.17  E-value=2.1e-05  Score=58.69  Aligned_cols=98  Identities=8%  Similarity=0.142  Sum_probs=73.5

Q ss_pred             ChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971          259 NQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG  336 (363)
Q Consensus       259 t~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~  336 (363)
                      +.+.+.... ..++++++.|+ .........+...++++++.+++ +.|+.+|++..+.+++.||+   ...|++++++.
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~P~~~~~~~   77 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFW-APWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI---RSIPTLLLFKN   77 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC---CcCCEEEEEeC
Confidence            344555533 33446666666 44666677788889999888876 99999999998899999999   67999999976


Q ss_pred             CCCeeEEEEEEeehhhhhHhhhhh
Q 017971          337 NENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       337 ~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      .+......+....+.+..|+.+.|
T Consensus        78 g~~~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        78 GKEVDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             CcEeeeecCCCCHHHHHHHHHhhC
Confidence            555556667777788998887754

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PRK10996 thioredoxin 2; Provisional

Probab=98.16  E-value=2.4e-05  Score=62.50  Aligned_cols=100  Identities=13%  Similarity=0.188  Sum_probs=79.6

Q ss_pred             cCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEe
Q 017971          257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD  335 (363)
Q Consensus       257 ~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~  335 (363)
                      +++..+++.+...++++++.|+. ......+.+...+.++++++.+ +.|+.+|.++.+.+++.+++   .+.|++++++
T Consensus        39 ~~~~~~~~~~i~~~k~vvv~F~a-~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V---~~~Ptlii~~  114 (139)
T PRK10996         39 NATGETLDKLLQDDLPVVIDFWA-PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI---RSIPTIMIFK  114 (139)
T ss_pred             EcCHHHHHHHHhCCCeEEEEEEC-CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC---CccCEEEEEE
Confidence            46667777766666677776664 4667777788899999988776 99999999999999999999   6899999998


Q ss_pred             CCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          336 GNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       336 ~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ..+......+....+.++.++.+.|
T Consensus       115 ~G~~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        115 NGQVVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHhC
Confidence            5555666678888888999888754

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.12  E-value=6.7e-06  Score=65.25  Aligned_cols=73  Identities=25%  Similarity=0.442  Sum_probs=57.5

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------------------------hhhhhhC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------------------SRLASKQ  113 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~  113 (363)
                      +++.+.++|.|.||++|+.|-|.+.++-+.++..+..+-+.-|+-+.+                         .+++++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            459999999999999999999999999988887655555555543322                         3688899


Q ss_pred             CcCcCCEEEEEeC-CEEEe
Q 017971          114 EIDAFPTLKIFMH-GIPTE  131 (363)
Q Consensus       114 ~i~~~Pt~~~~~~-g~~~~  131 (363)
                      +|.+.|++++.+. |+.+.
T Consensus       112 ~v~~iP~l~i~~~dG~~v~  130 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGTVVT  130 (157)
T ss_pred             ccCcCceeEEecCCCCEeh
Confidence            9999999999864 55554

>TIGR03137 AhpC peroxiredoxin

Probab=98.10  E-value=5.6e-05  Score=63.62  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=70.6

Q ss_pred             CCCCccccccC-CCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---
Q 017971           30 GLSSEEETKFK-IDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---  104 (363)
Q Consensus        30 ~~~~~~~~~~~-~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---  104 (363)
                      |..+|+...++ .++....++.++|     .+++++|.|| +.||+.|....|.+.++.+++.+.+  +.+..|.++   
T Consensus         5 G~~aP~f~l~~~~~g~~~~~sl~d~-----~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~   77 (187)
T TIGR03137         5 NTEIKPFKATAYHNGEFVEVTDEDV-----KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHF   77 (187)
T ss_pred             CCcCCCcEeeeccCCceeEecHHHH-----CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHH
Confidence            33445544443 3444445555544     4578999999 9999999999999999998887544  334333332   


Q ss_pred             ----------------------cchhhhhhCCcC------cCCEEEEEe-CCEEEe-e--cC--CCCHHHHHHHHH
Q 017971          105 ----------------------KYSRLASKQEID------AFPTLKIFM-HGIPTE-Y--YG--PRKAELLVRYLK  146 (363)
Q Consensus       105 ----------------------~~~~l~~~~~i~------~~Pt~~~~~-~g~~~~-y--~g--~~~~~~i~~~i~  146 (363)
                                            ....+++.|++.      ..|+.+++. +|+... +  .+  .+..+++.+.++
T Consensus        78 ~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~  153 (187)
T TIGR03137        78 VHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK  153 (187)
T ss_pred             HHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence                                  234677788886      358888885 565432 2  11  346777776654

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK09381 trxA thioredoxin; Provisional

Probab=98.10  E-value=4.2e-05  Score=58.22  Aligned_cols=102  Identities=15%  Similarity=0.178  Sum_probs=80.2

Q ss_pred             cccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          255 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       255 ~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      +.+++..++.. +...+.++++.|+. ........+...++++++++.+ +.|+.+|++..+.+++.+++   ...|+++
T Consensus         5 v~~~~~~~~~~~v~~~~~~vvv~f~~-~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~   80 (109)
T PRK09381          5 IIHLTDDSFDTDVLKADGAILVDFWA-EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTLL   80 (109)
T ss_pred             ceeeChhhHHHHHhcCCCeEEEEEEC-CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC---CcCCEEE
Confidence            45667667764 44455666666664 4677788889999999999877 99999999998999999999   6799999


Q ss_pred             EEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          333 VWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       333 i~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +++.........+....++++.++...|
T Consensus        81 ~~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         81 LFKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            9975445666777888888999988765

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.08  E-value=2.6e-05  Score=59.36  Aligned_cols=98  Identities=14%  Similarity=0.161  Sum_probs=73.2

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC----C---CcEEEEEeccCchhHHhhcCCCCCCC
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN----R---ELVFCYVGIKQFADFADTFEANKKSK  327 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~----~---~~~f~~vd~~~~~~~~~~~gi~~~~~  327 (363)
                      +.+++.++++.....++++++.|+ ..-....+++...+.++|+.+    +   .+.|+.+|+++++.+++.+|+   ..
T Consensus         3 v~~l~~~~f~~~i~~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v---~~   78 (108)
T cd02996           3 IVSLTSGNIDDILQSAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI---NK   78 (108)
T ss_pred             eEEcCHhhHHHHHhcCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC---Cc
Confidence            457888999987777777666665 446666777888888877653    1   289999999999999999999   68


Q ss_pred             CCeEEEEeCCC-CeeEEEEEEeehhhhhHh
Q 017971          328 LPKMVVWDGNE-NYLTVSINVLKTRVCFFM  356 (363)
Q Consensus       328 ~P~~vi~~~~~-~y~~~~~~~~~~~~~~~~  356 (363)
                      .|+++++...+ ......+....+.+..|+
T Consensus        79 ~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          79 YPTLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            99999997544 235556666666666664

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.08  E-value=2.2e-05  Score=60.62  Aligned_cols=103  Identities=13%  Similarity=0.159  Sum_probs=74.2

Q ss_pred             CcccCChhhHHhhhcC-CCcEEEEEEeCCChh-hHH--HHHHHHHHHHHhC--CC-cEEEEEeccCchhHHhhcCCCCCC
Q 017971          254 LSVPINQDTLNLLKDD-KRKIVLAIVEDETEE-KSQ--KLVTTLKAAASAN--RE-LVFCYVGIKQFADFADTFEANKKS  326 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~-~~~--~~~~~l~~~a~~~--~~-~~f~~vd~~~~~~~~~~~gi~~~~  326 (363)
                      .+..+|..|++..... ..++++.|...--.+ ..+  .....+.++|.++  .+ +.|+.||+++++++++.||+   .
T Consensus        10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I---~   86 (120)
T cd03065          10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL---D   86 (120)
T ss_pred             ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC---c
Confidence            3567788888875444 445555554332211 123  4455666777776  44 99999999999999999999   7


Q ss_pred             CCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          327 KLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       327 ~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ..|+++++... +.-...|...++.+..|+..++
T Consensus        87 ~iPTl~lfk~G-~~v~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          87 EEDSIYVFKDD-EVIEYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             cccEEEEEECC-EEEEeeCCCCHHHHHHHHHHHh
Confidence            89999999854 4445889999999999998765

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=98.06  E-value=1.5e-05  Score=69.34  Aligned_cols=82  Identities=16%  Similarity=0.274  Sum_probs=60.3

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEE----------------------------------------
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA----------------------------------------   99 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~----------------------------------------   99 (363)
                      .+..++.|..+.|++|+++++++.++.+.    +-.+.+.                                        
T Consensus       107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~  182 (232)
T PRK10877        107 EKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA  182 (232)
T ss_pred             CCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence            35789999999999999999998876431    0011111                                        


Q ss_pred             --EEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhh
Q 017971          100 --KVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       100 --~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~  148 (363)
                        ..+..++.++++++||+++|+++ +.+|+.+  .|..+.+.|.+++.+.
T Consensus       183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccchHHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCHHHHHHHHHHc
Confidence              11223456789999999999999 6788655  7989999999998754

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.05  E-value=4e-05  Score=61.15  Aligned_cols=83  Identities=13%  Similarity=0.074  Sum_probs=58.9

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC---------------------ccchhhhhhCCcC
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA---------------------DKYSRLASKQEID  116 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~---------------------~~~~~l~~~~~i~  116 (363)
                      ++++++|.|| +.||+.|....|.+.++.+.+.+.+  +.+..|..                     +.+..+.+.|++.
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~   99 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW   99 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence            3689999999 5899999999999999998886533  55554433                     2334677778888


Q ss_pred             cC---------CEEEEEe-CCEEE-eecCCCCHHHHHH
Q 017971          117 AF---------PTLKIFM-HGIPT-EYYGPRKAELLVR  143 (363)
Q Consensus       117 ~~---------Pt~~~~~-~g~~~-~y~g~~~~~~i~~  143 (363)
                      ..         |+.+++. +|+.. .|.|....+.+.+
T Consensus       100 ~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~  137 (140)
T cd03017         100 GEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE  137 (140)
T ss_pred             cccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence            87         8888886 46544 3677665555443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.03  E-value=3.6e-05  Score=57.18  Aligned_cols=95  Identities=11%  Similarity=0.160  Sum_probs=74.2

Q ss_pred             cCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN--RE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       257 ~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~--~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      +++..++.....++++.++.|+. ......+.+...+.+++..+  .+ +.|+.+|+...+.+++.+++   ...|++++
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i---~~~Pt~~~   77 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYA-PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGV---RGYPTIKL   77 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEEC-CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCC---CCCCEEEE
Confidence            46677888877777777777764 45777788889999999888  34 99999999998999999999   67999999


Q ss_pred             EeCC-CCeeEEEEEEeehhhhhH
Q 017971          334 WDGN-ENYLTVSINVLKTRVCFF  355 (363)
Q Consensus       334 ~~~~-~~y~~~~~~~~~~~~~~~  355 (363)
                      ++++ ......++......+..|
T Consensus        78 ~~~~~~~~~~~~g~~~~~~i~~~  100 (101)
T cd02961          78 FPNGSKEPVKYEGPRTLESLVEF  100 (101)
T ss_pred             EcCCCcccccCCCCcCHHHHHhh
Confidence            9988 556666666555555544

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.02  E-value=3.5e-05  Score=58.00  Aligned_cols=97  Identities=12%  Similarity=0.197  Sum_probs=75.4

Q ss_pred             ccCChhhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--C-cEEEEEeccC-chhHHhhcCCCCCCCCCe
Q 017971          256 VPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ-FADFADTFEANKKSKLPK  330 (363)
Q Consensus       256 ~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~-~~f~~vd~~~-~~~~~~~~gi~~~~~~P~  330 (363)
                      .+++..++...... ++++++.|. .......+++.+.+.++++.++  + +.|+.+|+.. ++.+++.+++   ...|+
T Consensus         3 ~~l~~~~~~~~~~~~~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i---~~~P~   78 (105)
T cd02998           3 VELTDSNFDKVVGDDKKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV---SGFPT   78 (105)
T ss_pred             EEcchhcHHHHhcCCCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC---CCcCE
Confidence            46677777775544 446666655 5567777888889999998875  3 9999999999 8999999999   67899


Q ss_pred             EEEEeCC-CCeeEEEEEEeehhhhhHh
Q 017971          331 MVVWDGN-ENYLTVSINVLKTRVCFFM  356 (363)
Q Consensus       331 ~vi~~~~-~~y~~~~~~~~~~~~~~~~  356 (363)
                      +++++.+ .+.....+....+.+..|+
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          79 LKFFPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EEEEeCCCCCccccCCccCHHHHHhhC
Confidence            9999987 4667777888888877764

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.00  E-value=2.7e-05  Score=63.39  Aligned_cols=86  Identities=27%  Similarity=0.442  Sum_probs=75.5

Q ss_pred             CCeEEcC-hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELD-ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~-~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +...++. +.+|-+...+.+-+++.||.|.-..|+-....++.+|+..-+    ..|.+||....|-++.+++|+-.|++
T Consensus        66 G~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~PFlv~kL~IkVLP~v  141 (211)
T KOG1672|consen   66 GEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAPFLVTKLNIKVLPTV  141 (211)
T ss_pred             ceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCceeeeeeeeeEeeeE
Confidence            4455554 788888888889999999999999999999999999976433    89999999999999999999999999


Q ss_pred             EEEeCCEEEee
Q 017971          122 KIFMHGIPTEY  132 (363)
Q Consensus       122 ~~~~~g~~~~y  132 (363)
                      .+|++|....|
T Consensus       142 ~l~k~g~~~D~  152 (211)
T KOG1672|consen  142 ALFKNGKTVDY  152 (211)
T ss_pred             EEEEcCEEEEE
Confidence            99999987764

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.00  E-value=6.5e-05  Score=57.35  Aligned_cols=104  Identities=15%  Similarity=0.057  Sum_probs=82.1

Q ss_pred             eEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc--CCEEE
Q 017971           45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA--FPTLK  122 (363)
Q Consensus        45 v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt~~  122 (363)
                      |.++|.+|++.+...+-+..+.|+++.  .-..+.+.+.++|+.+....+++.|+.+|.++.....+.+|+++  .|.+.
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~   78 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFHDKD--DLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA   78 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence            467889999988888777777777333  34788999999999933333459999999999888999999987  89999


Q ss_pred             EEeCCE--EEe-ecCCCCHHHHHHHHHhhcC
Q 017971          123 IFMHGI--PTE-YYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       123 ~~~~g~--~~~-y~g~~~~~~i~~~i~~~~~  150 (363)
                      +...+.  .+. +.+..+.+.|.+|+.+...
T Consensus        79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             EEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            987543  444 5688999999999998764

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=97.99  E-value=7.7e-05  Score=61.96  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      ++++++|.|| +.||++|....+.+.++.+++.+.+  +.+..|.++.                            ...+
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~  105 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI  105 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence            4589999999 7999999999999999999887543  5555454432                            2345


Q ss_pred             hhhCCcC------cCCEEEEEe-CCEEE-eecC----CCCHHHHHHHHHhh
Q 017971          110 ASKQEID------AFPTLKIFM-HGIPT-EYYG----PRKAELLVRYLKKF  148 (363)
Q Consensus       110 ~~~~~i~------~~Pt~~~~~-~g~~~-~y~g----~~~~~~i~~~i~~~  148 (363)
                      .+.|++.      ..|+.+++. +|+.. .+.+    .+..+++.+.++..
T Consensus       106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            5667775      467888886 45433 2322    34566777777553

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.97  E-value=0.00012  Score=61.34  Aligned_cols=63  Identities=22%  Similarity=0.171  Sum_probs=43.3

Q ss_pred             CccccccCCCCCeEEcChhhHHHhHcCCCeE-EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           33 SEEETKFKIDGKVIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        33 ~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~-lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      .|+....+.++..+.|+  +|     .++++ ++.+||+||+.|++..|.+.++.+++++.  ++.+..|+|+
T Consensus        20 ~p~f~l~d~~G~~vsLs--~~-----~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~   83 (183)
T PTZ00256         20 FFEFEAIDIDGQLVQLS--KF-----KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCN   83 (183)
T ss_pred             ccceEeEcCCCCEEeHH--Hh-----CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecc
Confidence            34444444455444443  22     45654 55669999999999999999999998754  3888888763

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.97  E-value=8e-05  Score=65.05  Aligned_cols=87  Identities=20%  Similarity=0.192  Sum_probs=66.5

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------chhhhhhCCcCcCCEEEEEeCC--E
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------YSRLASKQEIDAFPTLKIFMHG--I  128 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~Pt~~~~~~g--~  128 (363)
                      .+..|+.||.+.|++|+++.|.+..+++.+   +-.+....+|..-         +...++++|+..+|++++...+  +
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~  226 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK  226 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence            469999999999999999999999999876   2224444455432         2458899999999999999754  3


Q ss_pred             EEe-ecCCCCHHHHHHHHHhhc
Q 017971          129 PTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       129 ~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      ... -.|..+.++|.+-+...+
T Consensus       227 ~~pv~~G~iS~deL~~Ri~~v~  248 (256)
T TIGR02739       227 MSPLAYGFISQDELKERILNVL  248 (256)
T ss_pred             EEEEeeccCCHHHHHHHHHHHH
Confidence            333 479999999988776554

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.97  E-value=3.6e-05  Score=67.06  Aligned_cols=129  Identities=19%  Similarity=0.242  Sum_probs=94.7

Q ss_pred             HHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHHhhhhhH------HHHhhhcchhhhhhcCCCCCCeEEEEc
Q 017971          160 AEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKKKAW------FAVAKDFSEDTMVLYDFDKVPALVALQ  225 (363)
Q Consensus       160 ~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~p~iv~~~  225 (363)
                      .+++..+..++   .++|.|+.++        +.+.+.|..++...-      -.+..+...+++.+|.++++|++.+|+
T Consensus         4 ~N~~~il~s~e---lvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    4 ENIDSILDSNE---LVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             ccHHHhhccce---EEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            34677777755   6888888765        457777776665321      122245668889999999999999999


Q ss_pred             CCCCCcccccCCCCHHHHHHHHHhhcCCCcccCCh-hhHHhhhcCCCcEEEEEEeCCChhhHHHHHH
Q 017971          226 PSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVT  291 (363)
Q Consensus       226 ~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~  291 (363)
                      .+.-....|.|..+.+.|.+||++...-.+.++.. +.+..+....+..+|..|.+.+..+++.+++
T Consensus        81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~k  147 (375)
T KOG0912|consen   81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRK  147 (375)
T ss_pred             ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHH
Confidence            86666678999999999999999997666766654 4555666666788888888767776654443

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.96  E-value=6.2e-05  Score=54.45  Aligned_cols=94  Identities=21%  Similarity=0.287  Sum_probs=74.9

Q ss_pred             hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcC----cCC-EEE
Q 017971           50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEID----AFP-TLK  122 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~P-t~~  122 (363)
                      -++|.+++.-...++|.|..+--. -......+.++|+.+++.   -.++.|||.+  .+.||+++.+.    .-| .+.
T Consensus         9 ~KdfKKLLRTr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG~---gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk   84 (112)
T cd03067           9 HKDFKKLLRTRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKGQ---GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK   84 (112)
T ss_pred             hHHHHHHHhhcCcEEEEEecchhh-HHHHHHHHHHHHHHhcCc---eeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence            478999998878888887766544 345556889999988876   6688899987  78999999988    334 477


Q ss_pred             EEeCCEEE-eecCCCCHHHHHHHHHh
Q 017971          123 IFMHGIPT-EYYGPRKAELLVRYLKK  147 (363)
Q Consensus       123 ~~~~g~~~-~y~g~~~~~~i~~~i~~  147 (363)
                      .|++|... +|+-..+..+|++|++.
T Consensus        85 HYKdG~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          85 HYKDGDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             cccCCCccccccchhhHHHHHHHhhC
Confidence            78999876 59999999999999874

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=97.93  E-value=9.1e-05  Score=55.48  Aligned_cols=97  Identities=10%  Similarity=0.136  Sum_probs=73.1

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC----CcEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      +.++|.++++....++ ++++.|+ ..-....+.+...+.+++++++    ++.|+.+|++..+.+++.+++   ...|+
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt   76 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV---RGYPT   76 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC---CcCCE
Confidence            3467888888766554 4555555 4466677788888888888764    389999999988899999998   67999


Q ss_pred             EEEEeCCCCeeEEEEEEeehhhhhHh
Q 017971          331 MVVWDGNENYLTVSINVLKTRVCFFM  356 (363)
Q Consensus       331 ~vi~~~~~~y~~~~~~~~~~~~~~~~  356 (363)
                      +++++.++.-....|....+.+..|+
T Consensus        77 ~~~~~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          77 LLLFKDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence            99996555556677777777766664

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.92  E-value=0.00015  Score=53.09  Aligned_cols=92  Identities=15%  Similarity=0.259  Sum_probs=69.9

Q ss_pred             CCcccCChhhHHhhhcCC-CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchh----HHhhcCCCC
Q 017971          253 PLSVPINQDTLNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFAD----FADTFEANK  324 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~----~~~~~gi~~  324 (363)
                      |.+++++.+++..+-... ....|+.|....+....++.++++++|+++++   +.|+|||.++++-    +-+.|||+ 
T Consensus         1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~ID-   79 (120)
T cd03074           1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGID-   79 (120)
T ss_pred             CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcc-
Confidence            556788887777654433 45666667777888888999999999998876   9999999999855    55678883 


Q ss_pred             CCCCCeEEEEeCC---CCeeEEEEE
Q 017971          325 KSKLPKMVVWDGN---ENYLTVSIN  346 (363)
Q Consensus       325 ~~~~P~~vi~~~~---~~y~~~~~~  346 (363)
                       -..|.+.+.+.+   +-++.++.+
T Consensus        80 -l~~PqIGVV~vtdadSvW~~m~~~  103 (120)
T cd03074          80 -LFRPQIGVVNVTDADSVWMEMDDD  103 (120)
T ss_pred             -cCCCceeeEecccccceeEecccc
Confidence             346999999986   456666554

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=97.91  E-value=0.00015  Score=54.30  Aligned_cols=96  Identities=13%  Similarity=0.114  Sum_probs=74.4

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      +.+++.++++.+..+  +.++.|+ ..-....+.+...+.+++...++  +.|+.+|+.+++.+++.+++   ...|+++
T Consensus         3 v~~l~~~~f~~~~~~--~~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i---~~~Pt~~   76 (101)
T cd02994           3 VVELTDSNWTLVLEG--EWMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFV---TALPTIY   76 (101)
T ss_pred             eEEcChhhHHHHhCC--CEEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCC---cccCEEE
Confidence            457888888887643  2444444 44667778888889999887653  89999999999999999999   7899999


Q ss_pred             EEeCCCCeeEEEEEEeehhhhhHhh
Q 017971          333 VWDGNENYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       333 i~~~~~~y~~~~~~~~~~~~~~~~~  357 (363)
                      ++ ++|+.....+....+.+..|+.
T Consensus        77 ~~-~~g~~~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          77 HA-KDGVFRRYQGPRDKEDLISFIE  100 (101)
T ss_pred             Ee-CCCCEEEecCCCCHHHHHHHHh
Confidence            87 5566667778888888887764

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.89  E-value=3.8e-05  Score=55.33  Aligned_cols=59  Identities=17%  Similarity=0.286  Sum_probs=43.4

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-----hhhhhCCcCcCCEEEEEeCCEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----RLASKQEIDAFPTLKIFMHGIP  129 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~~  129 (363)
                      ++.|+++||++|++..+.+.+..  ..   ..+.+..+|-+++.     .+.+..++.++|+++  .+|..
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~---~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~   64 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VK---PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKF   64 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CC---CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEE
Confidence            47899999999999999998865  22   23667777765443     266667999999984  46654

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=97.88  E-value=0.00018  Score=58.53  Aligned_cols=99  Identities=17%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             CCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECC-CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-----
Q 017971           31 LSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----  104 (363)
Q Consensus        31 ~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----  104 (363)
                      ...|+....+.++..+.+.+  +     ++++++|.||+. ||+.|....+.+.++.+.+++.+  +.+..|..+     
T Consensus         8 ~~~p~f~l~~~~G~~~~l~~--~-----~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~~~~~   78 (154)
T PRK09437          8 DIAPKFSLPDQDGEQVSLTD--F-----QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDKPEKL   78 (154)
T ss_pred             CcCCCcEeeCCCCCEEeHHH--h-----CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHH
Confidence            34444444444454444322  2     457999999976 68889999999999988886543  555555432     


Q ss_pred             ----------------cchhhhhhCCcCcC------------CEEEEEe-CCEEEe-ecCCCCH
Q 017971          105 ----------------KYSRLASKQEIDAF------------PTLKIFM-HGIPTE-YYGPRKA  138 (363)
Q Consensus       105 ----------------~~~~l~~~~~i~~~------------Pt~~~~~-~g~~~~-y~g~~~~  138 (363)
                                      ....+.+.|++...            |+.+++. +|+... |.|....
T Consensus        79 ~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~  142 (154)
T PRK09437         79 SRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS  142 (154)
T ss_pred             HHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcc
Confidence                            33456667776543            5556664 565443 6664433

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.88  E-value=0.00021  Score=54.91  Aligned_cols=90  Identities=14%  Similarity=0.172  Sum_probs=65.8

Q ss_pred             HcCCCeEEEEEECC----CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCCEEEEEe--CCE
Q 017971           57 ISSFDYILVDFYAP----WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTLKIFM--HGI  128 (363)
Q Consensus        57 l~~~~~~lv~fy~~----~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~--~g~  128 (363)
                      -++.++.+|++|++    ||..|+..... .++.+-+++   ++.+...|.+.  ...++..+++.++|++.++.  +++
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~---~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~   89 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT---RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNR   89 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc---CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCc
Confidence            36779999999999    88999765422 123333333   37777788754  46789999999999999983  332


Q ss_pred             --EE-eecCCCCHHHHHHHHHhhcC
Q 017971          129 --PT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       129 --~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                        .+ +..|..++++++..++....
T Consensus        90 ~~vv~~i~G~~~~~~ll~~L~~~~~  114 (116)
T cd02991          90 MTIVGRLEGLIQPEDLINRLTFIMD  114 (116)
T ss_pred             eEEEEEEeCCCCHHHHHHHHHHHHh
Confidence              23 48999999999998877643

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.85  E-value=0.00017  Score=58.02  Aligned_cols=46  Identities=17%  Similarity=0.321  Sum_probs=35.3

Q ss_pred             CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh
Q 017971           61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR  108 (363)
Q Consensus        61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~  108 (363)
                      ..+++.|++.||+.|+...|.+.++.+++.+.  .+.+..|+.+....
T Consensus        25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~~~   70 (149)
T cd02970          25 PVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESPEK   70 (149)
T ss_pred             CEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCHHH
Confidence            34455456999999999999999999988644  38888888765543

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=97.85  E-value=0.00027  Score=58.33  Aligned_cols=42  Identities=17%  Similarity=0.305  Sum_probs=33.7

Q ss_pred             CCCeEEEEEECCC-ChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           59 SFDYILVDFYAPW-CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        59 ~~~~~lv~fy~~~-C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      .+++++|.||+.| |+.|....|.+.++++.+.    ++.+..|.++
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D   85 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISAD   85 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCC
Confidence            4679999999999 9999999999999988763    2555555543

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.85  E-value=9.8e-05  Score=57.87  Aligned_cols=86  Identities=22%  Similarity=0.366  Sum_probs=51.9

Q ss_pred             cChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC---CcCcCCEEEE
Q 017971           48 LDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ---EIDAFPTLKI  123 (363)
Q Consensus        48 l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~  123 (363)
                      ++++..+.+. ...+..++-|..+||+.|+..-|.+.++++...    .+.+--+--++++++-.+|   |...+|++++
T Consensus        28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~  103 (129)
T PF14595_consen   28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKELMDQYLTNGGRSIPTFIF  103 (129)
T ss_dssp             --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEE
T ss_pred             CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhHHHHHHhCCCeecCEEEE
Confidence            3444444333 233567888999999999999999999998642    3666666666777776654   6789999999


Q ss_pred             Ee-CCEEEeecCCCC
Q 017971          124 FM-HGIPTEYYGPRK  137 (363)
Q Consensus       124 ~~-~g~~~~y~g~~~  137 (363)
                      +. +|+.+..-|++.
T Consensus       104 ~d~~~~~lg~wgerP  118 (129)
T PF14595_consen  104 LDKDGKELGRWGERP  118 (129)
T ss_dssp             E-TT--EEEEEESS-
T ss_pred             EcCCCCEeEEEcCCC
Confidence            95 467666666664

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.82  E-value=0.00056  Score=53.77  Aligned_cols=108  Identities=15%  Similarity=0.200  Sum_probs=80.1

Q ss_pred             CeEEcChhhHHH-hHcCCCeEEEEEECC--CChh-h-hhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC--
Q 017971           44 KVIELDESNFDS-AISSFDYILVDFYAP--WCGH-C-KRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID--  116 (363)
Q Consensus        44 ~v~~l~~~~f~~-~l~~~~~~lv~fy~~--~C~~-C-~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--  116 (363)
                      .+++|++++.-. .=.+++..+|.|-..  .|.. + ......+.++|+.+++.  .+.|+.+|.++...+.+.||+.  
T Consensus         3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk--~i~Fv~vd~~~~~~~~~~fgl~~~   80 (130)
T cd02983           3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK--PWGWLWTEAGAQLDLEEALNIGGF   80 (130)
T ss_pred             ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC--cEEEEEEeCcccHHHHHHcCCCcc
Confidence            578888776643 334445556666432  1221 2 46788899999988653  3999999999999999999995  


Q ss_pred             cCCEEEEEeCCE-EEe-ecCCCCHHHHHHHHHhhcCCCc
Q 017971          117 AFPTLKIFMHGI-PTE-YYGPRKAELLVRYLKKFVAPDV  153 (363)
Q Consensus       117 ~~Pt~~~~~~g~-~~~-y~g~~~~~~i~~~i~~~~~~~v  153 (363)
                      ++|+++++...+ .+. +.|..+.+.|.+|+.+.+...+
T Consensus        81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence            599999997654 444 6799999999999999987554

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=97.82  E-value=0.00015  Score=54.44  Aligned_cols=97  Identities=9%  Similarity=0.161  Sum_probs=73.1

Q ss_pred             cccCChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          255 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       255 ~~~lt~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      +.+++..+++... ..++++++.|+ .......+.+...+.++++.+++   +.|+.+|++.+ ..+..+++   ...|+
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~---~~~Pt   76 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV---DGFPT   76 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC---CCCCE
Confidence            4577888888754 44466666665 44677778889999999988765   89999999875 46777777   68899


Q ss_pred             EEEEeCCC--CeeEEEEEEeehhhhhHh
Q 017971          331 MVVWDGNE--NYLTVSINVLKTRVCFFM  356 (363)
Q Consensus       331 ~vi~~~~~--~y~~~~~~~~~~~~~~~~  356 (363)
                      ++++..++  +.....++...+.+..|+
T Consensus        77 ~~~~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          77 ILFFPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence            99998876  566677777777776664

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.80  E-value=0.00016  Score=54.26  Aligned_cols=97  Identities=8%  Similarity=0.151  Sum_probs=72.8

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--C-cEEEEEeccC--chhHHhhcCCCCCCCCC
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ--FADFADTFEANKKSKLP  329 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P  329 (363)
                      +.+++..+++.....+++.++.|+.+ .....+++...+.++++.+.  + +.|+.+|+..  ++.+++.+|+   ...|
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i---~~~P   77 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAP-WCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV---KGFP   77 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECC-CCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC---cccc
Confidence            34677778887777777777777644 56677778888888887765  3 8899999987  8899999999   6789


Q ss_pred             eEEEEeCCCCeeEEEEEEeehhhhhH
Q 017971          330 KMVVWDGNENYLTVSINVLKTRVCFF  355 (363)
Q Consensus       330 ~~vi~~~~~~y~~~~~~~~~~~~~~~  355 (363)
                      ++++++.+..-....+....+.+..|
T Consensus        78 t~~~~~~g~~~~~~~g~~~~~~l~~~  103 (104)
T cd02997          78 TFKYFENGKFVEKYEGERTAEDIIEF  103 (104)
T ss_pred             EEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence            99999865545666666666665554

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.80  E-value=0.00016  Score=55.38  Aligned_cols=75  Identities=17%  Similarity=0.373  Sum_probs=48.5

Q ss_pred             hhHHHhH----cCCCeEEEEEECC-------CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------hhhhh-
Q 017971           51 SNFDSAI----SSFDYILVDFYAP-------WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------SRLAS-  111 (363)
Q Consensus        51 ~~f~~~l----~~~~~~lv~fy~~-------~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------~~l~~-  111 (363)
                      ++|.+++    +++++.+|.|+++       ||+.|....|.++++-....+   +..+..+.....       ..+-+ 
T Consensus         6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r~~Wkdp~n~fR~~   82 (119)
T PF06110_consen    6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDRPEWKDPNNPFRTD   82 (119)
T ss_dssp             HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---HHHHC-TTSHHHH-
T ss_pred             HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCHHHhCCCCCCceEc
Confidence            3455555    3457999999975       999999999999998876433   377776766432       23433 


Q ss_pred             -hCCcCcCCEEEEEeCCE
Q 017971          112 -KQEIDAFPTLKIFMHGI  128 (363)
Q Consensus       112 -~~~i~~~Pt~~~~~~g~  128 (363)
                       +++++++||++-+..++
T Consensus        83 p~~~l~~IPTLi~~~~~~  100 (119)
T PF06110_consen   83 PDLKLKGIPTLIRWETGE  100 (119)
T ss_dssp             -CC---SSSEEEECTSS-
T ss_pred             ceeeeeecceEEEECCCC
Confidence             58999999999887763

; PDB: 1V9W_A 1WOU_A.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=97.80  E-value=0.00017  Score=55.11  Aligned_cols=98  Identities=13%  Similarity=0.072  Sum_probs=73.6

Q ss_pred             CChhhHHh-hh--cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          258 INQDTLNL-LK--DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       258 lt~~~~~~-l~--~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      ++..++.. +.  ..++++++.|+.+ .....+.+...+.++++++++  +.++.+|++..+.+++.+|+   ...|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~vlV~F~a~-wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V---~~~Pt~~   84 (111)
T cd02963           9 LTFSQYENEIVPKSFKKPYLIKITSD-WCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA---HSVPAIV   84 (111)
T ss_pred             eeHHHHHHhhccccCCCeEEEEEECC-ccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC---ccCCEEE
Confidence            34455543 32  2456777777644 667777888888889888764  89999999988899999999   7899999


Q ss_pred             EEeCCCCeeEEEEEEeehhhhhHhhhh
Q 017971          333 VWDGNENYLTVSINVLKTRVCFFMLTL  359 (363)
Q Consensus       333 i~~~~~~y~~~~~~~~~~~~~~~~~~~  359 (363)
                      +++.+.......+....+.++.|+..+
T Consensus        85 i~~~g~~~~~~~G~~~~~~l~~~i~~~  111 (111)
T cd02963          85 GIINGQVTFYHDSSFTKQHVVDFVRKL  111 (111)
T ss_pred             EEECCEEEEEecCCCCHHHHHHHHhcC
Confidence            998554555667888888888887653

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.79  E-value=0.00021  Score=51.76  Aligned_cols=76  Identities=16%  Similarity=0.186  Sum_probs=54.5

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch----hhhhhCC--cCcCCEEEEEeCCEEEeecCCC
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS----RLASKQE--IDAFPTLKIFMHGIPTEYYGPR  136 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~Pt~~~~~~g~~~~y~g~~  136 (363)
                      -++.|+.+||++|++..+.++++.....    ++.+..+|.++++    ++.+..+  +..+|+++  .+|+.+.     
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig-----   70 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG-----   70 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc-----
Confidence            4678999999999999999999886532    3778888887653    4544444  57899986  4665432     


Q ss_pred             CHHHHHHHHHhhc
Q 017971          137 KAELLVRYLKKFV  149 (363)
Q Consensus       137 ~~~~i~~~i~~~~  149 (363)
                      .-+++.++.+.++
T Consensus        71 g~~~~~~~~~~~~   83 (85)
T PRK11200         71 GCTDFEAYVKENL   83 (85)
T ss_pred             CHHHHHHHHHHhc
Confidence            2466777776654

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.79  E-value=0.0002  Score=62.19  Aligned_cols=87  Identities=17%  Similarity=0.140  Sum_probs=66.4

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc---------hhhhhhCCcCcCCEEEEEeCC--E
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---------SRLASKQEIDAFPTLKIFMHG--I  128 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---------~~l~~~~~i~~~Pt~~~~~~g--~  128 (363)
                      ++..|+.||.+.|++|+++.|.+..+++.+.   -.|....+|..-.         ...++++||..+|++++...+  +
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~  219 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS  219 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence            4689999999999999999999999998762   2355556665322         336678999999999999754  3


Q ss_pred             EEe-ecCCCCHHHHHHHHHhhc
Q 017971          129 PTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       129 ~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      ... -.|..+.++|.+-+....
T Consensus       220 ~~pv~~G~iS~deL~~Ri~~v~  241 (248)
T PRK13703        220 VRPLSYGFITQDDLAKRFLNVS  241 (248)
T ss_pred             EEEEeeccCCHHHHHHHHHHHH
Confidence            333 479999999987776543

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=97.78  E-value=0.00016  Score=54.12  Aligned_cols=83  Identities=6%  Similarity=0.036  Sum_probs=68.3

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEecc-CchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEE
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK-QFADFADTFEANKKSKLPKMVVWDGNENYLTVSINV  347 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~-~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~  347 (363)
                      .++++++.|+ ..-....+.+...+.++++.++++.|+.+|.. +++.+++.+++   ..+|++++++++ ......|..
T Consensus        17 ~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V---~~~PT~~lf~~g-~~~~~~G~~   91 (100)
T cd02999          17 REDYTAVLFY-ASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV---VGFPTILLFNST-PRVRYNGTR   91 (100)
T ss_pred             CCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC---eecCEEEEEcCC-ceeEecCCC
Confidence            4566666666 34567778889999999999988889999998 78899999999   679999999877 777788888


Q ss_pred             eehhhhhHh
Q 017971          348 LKTRVCFFM  356 (363)
Q Consensus       348 ~~~~~~~~~  356 (363)
                      ..+.+.+|+
T Consensus        92 ~~~~l~~f~  100 (100)
T cd02999          92 TLDSLAAFY  100 (100)
T ss_pred             CHHHHHhhC
Confidence            888888774

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=97.78  E-value=0.00014  Score=55.56  Aligned_cols=94  Identities=15%  Similarity=0.216  Sum_probs=67.8

Q ss_pred             ceecCChHHHHHHHHhcCCcccEEEeecC--C-hh---HHHHHHHHhhhhh-HHHHh---h-----hcchhhhhhcCCC-
Q 017971          153 VSILNSDAEVSDFVENAGTFFPLFIGFGL--D-ES---VMSNLALKYKKKA-WFAVA---K-----DFSEDTMVLYDFD-  216 (363)
Q Consensus       153 v~~i~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~---~~~~~a~~~~~~~-~~~~~---~-----~~~~~~~~~~~~~-  216 (363)
                      +..|++ .++++++.+++   .++|-|+.  . ..   .++.+|.++.... .+.++   .     ..+.+++++|+++ 
T Consensus         3 ~v~L~~-~nF~~~v~~~~---~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~   78 (116)
T cd03007           3 CVDLDT-VTFYKVIPKFK---YSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK   78 (116)
T ss_pred             eeECCh-hhHHHHHhcCC---cEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc
Confidence            455655 56999998887   36666665  2 23   6888888775421 11121   1     2347799999999 


Q ss_pred             -CCCeEEEEcCC-CCCcccccCC-CCHHHHHHHHHhh
Q 017971          217 -KVPALVALQPS-YNEHNIFYGP-FDEEFLEEFIKQN  250 (363)
Q Consensus       217 -~~p~iv~~~~~-~~~~~~~~g~-~~~~~l~~fi~~~  250 (363)
                       ++|++.+|+.+ ...+..|.|. .+.++|.+||+++
T Consensus        79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence             99999999975 2356789996 9999999999886

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=97.78  E-value=0.0002  Score=61.65  Aligned_cols=103  Identities=13%  Similarity=0.165  Sum_probs=81.3

Q ss_pred             CcccCChhhHHhhhcC-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCC
Q 017971          254 LSVPINQDTLNLLKDD-----KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSK  327 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~  327 (363)
                      .+.++|..+++.+...     ++++++.|+. .-....+.+...+.++|+++++ +.|+.+|+++++.+++.+++   .+
T Consensus        31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyA-pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I---~~  106 (224)
T PTZ00443         31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYA-PWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAI---KG  106 (224)
T ss_pred             CcEECCHHHHHHHHhhhcccCCCCEEEEEEC-CCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCC---Cc
Confidence            4678888888875432     3567766664 4667778888999999999988 89999999999999999999   68


Q ss_pred             CCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          328 LPKMVVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       328 ~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      .|++++++....+....+....+.+..|+..-+
T Consensus       107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~  139 (224)
T PTZ00443        107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDF  139 (224)
T ss_pred             CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            999999995444555567788889999987654

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.77  E-value=0.00021  Score=55.65  Aligned_cols=105  Identities=11%  Similarity=0.108  Sum_probs=79.8

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeC-CChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      .++.++..++......+...++++-.+ ....+..+..=+|.++++++.+  +.|+.||.++++.+...||+   ...|+
T Consensus        18 g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV---~siPT   94 (132)
T PRK11509         18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGV---FRFPA   94 (132)
T ss_pred             CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCC---ccCCE
Confidence            344455577777666655554444322 3334455667788899999883  89999999999999999999   68999


Q ss_pred             EEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          331 MVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       331 ~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++++..+.-....|-..++.+.+++..+|.
T Consensus        95 Ll~FkdGk~v~~i~G~~~k~~l~~~I~~~L~  125 (132)
T PRK11509         95 TLVFTGGNYRGVLNGIHPWAELINLMRGLVE  125 (132)
T ss_pred             EEEEECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence            9999999877788888888888888887764

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.76  E-value=8.5e-05  Score=56.28  Aligned_cols=93  Identities=18%  Similarity=0.274  Sum_probs=68.7

Q ss_pred             CceecCChHHHHHHHHhc-CCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEc
Q 017971          152 DVSILNSDAEVSDFVENA-GTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQ  225 (363)
Q Consensus       152 ~v~~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~  225 (363)
                      ++.++++.++++.++... +   +.+|||+.+.     ..+.++|..+++.+.|++  +.+..+...+++.. |.+++|+
T Consensus         1 ~v~~i~s~~ele~f~~~~~~---~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~--t~~~~~~~~~~~~~-~~vvl~r   74 (107)
T cd03068           1 PSKQLQTLKQVQEFLRDGDD---VIIIGVFSGEEDPAYQLYQDAANSLREDYKFHH--TFDSEIFKSLKVSP-GQLVVFQ   74 (107)
T ss_pred             CceEcCCHHHHHHHHhcCCC---EEEEEEECCCCCHHHHHHHHHHHhcccCCEEEE--EChHHHHHhcCCCC-CceEEEC
Confidence            357788889999998776 4   5788887442     358889999988887765  34567777888764 7788886


Q ss_pred             C------CCCCcccccCC-CCHHH-HHHHHHhh
Q 017971          226 P------SYNEHNIFYGP-FDEEF-LEEFIKQN  250 (363)
Q Consensus       226 ~------~~~~~~~~~g~-~~~~~-l~~fi~~~  250 (363)
                      +      -.+....|.|. .+.++ |..||+.|
T Consensus        75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             cHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence            5      24456678877 66656 99999865

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.73  E-value=0.00029  Score=53.65  Aligned_cols=98  Identities=13%  Similarity=0.109  Sum_probs=72.3

Q ss_pred             EcChhhHHHhHcCCCeEEEEEE----CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc----C
Q 017971           47 ELDESNFDSAISSFDYILVDFY----APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA----F  118 (363)
Q Consensus        47 ~l~~~~f~~~l~~~~~~lv~fy----~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~----~  118 (363)
                      .+|.+|..... . .+.++.||    +..-..-..+.+.+.++|+.+++  +++.|+.+|.++.....+.||+..    .
T Consensus         3 ~~~~en~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~--gki~Fv~~D~~~~~~~l~~fgl~~~~~~~   78 (111)
T cd03073           3 HRTKDNRAQFT-K-KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD--RKLNFAVADKEDFSHELEEFGLDFSGGEK   78 (111)
T ss_pred             eeccchHHHhc-c-CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC--CeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence            56777777774 2 33344433    33445567899999999999872  239999999998888889999974    9


Q ss_pred             CEEEEEeCCE-EEeecCCC-CHHHHHHHHHhh
Q 017971          119 PTLKIFMHGI-PTEYYGPR-KAELLVRYLKKF  148 (363)
Q Consensus       119 Pt~~~~~~g~-~~~y~g~~-~~~~i~~~i~~~  148 (363)
                      |.+.+...+. .+...+.. +.+.|.+|+.+.
T Consensus        79 P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          79 PVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence            9999987433 33346777 999999999875

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=97.73  E-value=0.00037  Score=53.42  Aligned_cols=88  Identities=9%  Similarity=0.110  Sum_probs=66.7

Q ss_pred             CcccCCh-hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          254 LSVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       254 ~~~~lt~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      .+.+++. ..+.....+++++++.|+.+ .....+.+...+.+++++++++.|..+|.+.++.+.+.+++   ...|+++
T Consensus         5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~-~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v---~~vPt~l   80 (113)
T cd02989           5 KYREVSDEKEFFEIVKSSERVVCHFYHP-EFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNI---KVLPTVI   80 (113)
T ss_pred             CeEEeCCHHHHHHHHhCCCcEEEEEECC-CCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCC---ccCCEEE
Confidence            3444444 55665555566777777644 56677788899999999998999999999999999999999   6899999


Q ss_pred             EEeCCCCeeEEEE
Q 017971          333 VWDGNENYLTVSI  345 (363)
Q Consensus       333 i~~~~~~y~~~~~  345 (363)
                      +++.........+
T Consensus        81 ~fk~G~~v~~~~g   93 (113)
T cd02989          81 LFKNGKTVDRIVG   93 (113)
T ss_pred             EEECCEEEEEEEC
Confidence            9987644444333

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=97.71  E-value=0.00028  Score=53.72  Aligned_cols=84  Identities=13%  Similarity=0.178  Sum_probs=67.5

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEe
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVL  348 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~  348 (363)
                      ++++++-|. ..-....+.+...+.++|.++++ +.|+.||.++++.+...+|+   ...|++++++....-....+..-
T Consensus        14 ~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V---~~iPTf~~fk~G~~v~~~~G~~~   89 (114)
T cd02954          14 EKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYEL---YDPPTVMFFFRNKHMKIDLGTGN   89 (114)
T ss_pred             CCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCC---CCCCEEEEEECCEEEEEEcCCCC
Confidence            445555554 45677778889999999999998 79999999999999999999   67999999998766666667777


Q ss_pred             ehhhhhHhh
Q 017971          349 KTRVCFFML  357 (363)
Q Consensus       349 ~~~~~~~~~  357 (363)
                      ++.+.++..
T Consensus        90 ~~~~~~~~~   98 (114)
T cd02954          90 NNKINWVFE   98 (114)
T ss_pred             CceEEEecC
Confidence            777666544

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=97.70  E-value=0.00019  Score=57.46  Aligned_cols=64  Identities=16%  Similarity=0.216  Sum_probs=45.5

Q ss_pred             CCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCC-ChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc
Q 017971           31 LSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPW-CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK  105 (363)
Q Consensus        31 ~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~-C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~  105 (363)
                      ..+|+....+.++..+.|.+  +     .+++++|.||+.| |++|+...|.+.++.++++    ++.+..|+.+.
T Consensus         4 ~~aP~f~l~~~~g~~~~l~~--~-----~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~   68 (143)
T cd03014           4 DKAPDFTLVTSDLSEVSLAD--F-----AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL   68 (143)
T ss_pred             CCCCCcEEECCCCcEEeHHH--h-----CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC
Confidence            34455444445555444432  2     4579999999998 6999999999999988763    37788887754

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PTZ00051 thioredoxin; Provisional

Probab=97.70  E-value=0.00049  Score=51.11  Aligned_cols=82  Identities=11%  Similarity=0.201  Sum_probs=63.0

Q ss_pred             hhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCC
Q 017971          260 QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN  339 (363)
Q Consensus       260 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~  339 (363)
                      .+.+..+...++++++.|+ .......+.+...+.+++++++++.|+.+|.+++..+++.|++   ...|++++++..+.
T Consensus         8 ~~~~~~~~~~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~g~~   83 (98)
T PTZ00051          8 QAEFESTLSQNELVIVDFY-AEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENI---TSMPTFKVFKNGSV   83 (98)
T ss_pred             HHHHHHHHhcCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCC---ceeeEEEEEeCCeE
Confidence            4566666666666666666 4467777888899999999988899999999998999999999   68999999965444


Q ss_pred             eeEEEE
Q 017971          340 YLTVSI  345 (363)
Q Consensus       340 y~~~~~  345 (363)
                      .....|
T Consensus        84 ~~~~~G   89 (98)
T PTZ00051         84 VDTLLG   89 (98)
T ss_pred             EEEEeC
Confidence            434443

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=97.69  E-value=0.00043  Score=51.21  Aligned_cols=83  Identities=13%  Similarity=0.182  Sum_probs=64.2

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEe
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVL  348 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~  348 (363)
                      ++++++.|+. ......+.+...+.+++..+++ +.|+.+|++..+.+++.|++   ...|++++++.........+...
T Consensus        12 ~~~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i---~~~Pt~~~~~~g~~~~~~~g~~~   87 (96)
T cd02956          12 QVPVVVDFWA-PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGV---QALPTVYLFAAGQPVDGFQGAQP   87 (96)
T ss_pred             CCeEEEEEEC-CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCC---CCCCEEEEEeCCEEeeeecCCCC
Confidence            4567766664 4677778888999999999887 89999999999999999999   67999999984333345566666


Q ss_pred             ehhhhhHh
Q 017971          349 KTRVCFFM  356 (363)
Q Consensus       349 ~~~~~~~~  356 (363)
                      .+++..++
T Consensus        88 ~~~l~~~l   95 (96)
T cd02956          88 EEQLRQML   95 (96)
T ss_pred             HHHHHHHh
Confidence            66666654

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.68  E-value=0.00022  Score=57.60  Aligned_cols=82  Identities=18%  Similarity=0.325  Sum_probs=56.5

Q ss_pred             EEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHH-HHH--HHHHHhhcCCCCeEEEEEeCccchhhhhhC--------C
Q 017971           46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAP-QLD--EAAPILAKLKEPIVIAKVDADKYSRLASKQ--------E  114 (363)
Q Consensus        46 ~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~-~~~--~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~  114 (363)
                      ...+++.++.+-++++++||.++.+||+.|+.... .|.  ++++.++..   +.-.+||-++.+++-+.|        |
T Consensus        23 ~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pdid~~y~~~~~~~~~   99 (163)
T PF03190_consen   23 QPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPDIDKIYMNAVQAMSG   99 (163)
T ss_dssp             B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HHHHHHHHHHHHHHHS
T ss_pred             ccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCccHHHHHHHHHHHhcC
Confidence            34567889999999999999999999999998775 343  356666554   888899999999998888        7


Q ss_pred             cCcCCEEEEEeC-CEEE
Q 017971          115 IDAFPTLKIFMH-GIPT  130 (363)
Q Consensus       115 i~~~Pt~~~~~~-g~~~  130 (363)
                      ..|+|+.++... |+++
T Consensus       100 ~gGwPl~vfltPdg~p~  116 (163)
T PF03190_consen  100 SGGWPLTVFLTPDGKPF  116 (163)
T ss_dssp             ---SSEEEEE-TTS-EE
T ss_pred             CCCCCceEEECCCCCee
Confidence            889999998864 5655

; PDB: 3IRA_A.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.67  E-value=0.00029  Score=69.70  Aligned_cols=93  Identities=13%  Similarity=0.225  Sum_probs=72.5

Q ss_pred             EEcChhhHHHhHcCCCeEEE-EEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971           46 IELDESNFDSAISSFDYILV-DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        46 ~~l~~~~f~~~l~~~~~~lv-~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      ..|+++..+++-.=+++.-| .|.+++|++|......+.+++...    +++..-.+|.++.++++++|+|.++|++++ 
T Consensus       461 ~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~----~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i-  535 (555)
T TIGR03143       461 QPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN----PNVEAEMIDVSHFPDLKDEYGIMSVPAIVV-  535 (555)
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC----CCceEEEEECcccHHHHHhCCceecCEEEE-
Confidence            34556655555433455544 468999999998888888887653    358999999999999999999999999987 


Q ss_pred             eCCEEEeecCCCCHHHHHHHH
Q 017971          125 MHGIPTEYYGPRKAELLVRYL  145 (363)
Q Consensus       125 ~~g~~~~y~g~~~~~~i~~~i  145 (363)
                       +|+ ..+.|..+.+++++|+
T Consensus       536 -~~~-~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       536 -DDQ-QVYFGKKTIEEMLELI  554 (555)
T ss_pred             -CCE-EEEeeCCCHHHHHHhh
Confidence             555 4477988999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=97.64  E-value=0.00044  Score=55.72  Aligned_cols=41  Identities=7%  Similarity=0.234  Sum_probs=33.0

Q ss_pred             CeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017971           61 DYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA  103 (363)
Q Consensus        61 ~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~  103 (363)
                      ++++|.|| ++||+.|.+..|.+.++.+.+.+.+  +.+..|..
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~   70 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISV   70 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecC
Confidence            77888887 8999999999999999999886543  66665554

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=97.63  E-value=0.0012  Score=59.01  Aligned_cols=189  Identities=13%  Similarity=0.115  Sum_probs=113.5

Q ss_pred             CceecCChHHHHHHHHhcCCcccEEEeecCC---hh----------HHHHHHHHhhhhh--HHHHh-hhcchhhhhhcCC
Q 017971          152 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD---ES----------VMSNLALKYKKKA--WFAVA-KDFSEDTMVLYDF  215 (363)
Q Consensus       152 ~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~---~~----------~~~~~a~~~~~~~--~~~~~-~~~~~~~~~~~~~  215 (363)
                      .|..|+. .++.+++.+.+   ..++.|+..   ..          ...+++.+.....  -|+.+ ...+..+++++|+
T Consensus        35 RVi~Lne-KNfk~~lKkyd---~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv  110 (383)
T PF01216_consen   35 RVIDLNE-KNFKRALKKYD---VLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV  110 (383)
T ss_dssp             -CEEE-T-TTHHHHHHH-S---EEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred             ceEEcch-hHHHHHHHhhc---EEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence            4777755 67999999887   455655522   11          1233444443322  22222 3456778999999


Q ss_pred             CCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCCCcccCChh-hHHhhhc-CCCcEEEEEEeCCChhhHHHHHHHH
Q 017971          216 DKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQD-TLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTL  293 (363)
Q Consensus       216 ~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~-~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~l  293 (363)
                      ...+++.+|+.  ++...|.|.++++.|..||..--...+..++.. ....... ...+.+|.+|.+..++.    .+.+
T Consensus       111 ~E~~SiyVfkd--~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~----yk~F  184 (383)
T PF01216_consen  111 EEEGSIYVFKD--GEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEH----YKEF  184 (383)
T ss_dssp             -STTEEEEEET--TEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHH----HHHH
T ss_pred             cccCcEEEEEC--CcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHH----HHHH
Confidence            99999999987  788999999999999999999877667666653 2222222 22578889887766654    4456


Q ss_pred             HHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC--CCeeEEEEEEeehhhhhHhh
Q 017971          294 KAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN--ENYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       294 ~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~--~~y~~~~~~~~~~~~~~~~~  357 (363)
                      .++|..+.. +.|.-+-   .+.+++.+|+ .   +--+-.+.|-  .-...|..-.+-++++.|+.
T Consensus       185 eeAAe~F~p~IkFfAtf---d~~vAk~L~l-K---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~  244 (383)
T PF01216_consen  185 EEAAEHFQPYIKFFATF---DKKVAKKLGL-K---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIE  244 (383)
T ss_dssp             HHHHHHCTTTSEEEEE----SHHHHHHHT--S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHH
T ss_pred             HHHHHhhcCceeEEEEe---cchhhhhcCc-c---ccceeeeccccCCCccCCCCCCCHHHHHHHHH
Confidence            678898876 8875432   2468999998 2   5667777775  33455555567778888875

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.63  E-value=0.00094  Score=55.99  Aligned_cols=99  Identities=21%  Similarity=0.221  Sum_probs=66.8

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC------------------
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA------------------  103 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~------------------  103 (363)
                      +....++-++|     .++++++.|| +.||+.|....+.+.+..+++.+.+  +.+..|..                  
T Consensus        19 g~~~~v~L~d~-----~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~~~~a~~~~~~~~~~   91 (187)
T PRK10382         19 GEFIEVTEKDT-----EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHFTHKAWHSSSETIAK   91 (187)
T ss_pred             CcceEEEHHHh-----CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHHHHHHHhhccccC
Confidence            44555555544     4568999999 9999999999999999998886443  33333332                  


Q ss_pred             -------ccchhhhhhCCc----CcC--CEEEEEe-CCEEEe---e--cCCCCHHHHHHHHHhh
Q 017971          104 -------DKYSRLASKQEI----DAF--PTLKIFM-HGIPTE---Y--YGPRKAELLVRYLKKF  148 (363)
Q Consensus       104 -------~~~~~l~~~~~i----~~~--Pt~~~~~-~g~~~~---y--~g~~~~~~i~~~i~~~  148 (363)
                             +.+..+++.|++    .+.  |+.++.. +|+...   +  ...++.+++.+.+...
T Consensus        92 l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382         92 IKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence                   234578888998    355  8888886 454321   2  2346777777776443

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.63  E-value=7.8e-05  Score=63.35  Aligned_cols=83  Identities=20%  Similarity=0.237  Sum_probs=56.3

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHh--------------------------------h----cCCC--CeEEEEE
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPIL--------------------------------A----KLKE--PIVIAKV  101 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~--------------------------------~----~~~~--~v~~~~v  101 (363)
                      .+..++.|+.+.|++|+++.+.+.+....+                                +    +...  .......
T Consensus        77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~  156 (197)
T cd03020          77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDN  156 (197)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCc
Confidence            478999999999999999999887511100                                0    0000  0111222


Q ss_pred             eCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHH
Q 017971          102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL  145 (363)
Q Consensus       102 d~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i  145 (363)
                      +..++..+++++||+++|+++ +.+|..  ..|..+.+.|.+|+
T Consensus       157 ~i~~~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~~~l~~~L  197 (197)
T cd03020         157 PVAANLALGRQLGVNGTPTIV-LADGRV--VPGAPPAAQLEALL  197 (197)
T ss_pred             hHHHHHHHHHHcCCCcccEEE-ECCCeE--ecCCCCHHHHHhhC
Confidence            334556789999999999997 777865  46888888887764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.62  E-value=0.00062  Score=49.33  Aligned_cols=89  Identities=12%  Similarity=0.194  Sum_probs=65.6

Q ss_pred             HhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEE
Q 017971          264 NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTV  343 (363)
Q Consensus       264 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~  343 (363)
                      ......+++.++.|. .........+.+.+++++...+++.|+++|....+.+++.+++   ...|++++++.++.....
T Consensus         4 ~~~~~~~~~~ll~~~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v---~~~P~~~~~~~g~~~~~~   79 (93)
T cd02947           4 EELIKSAKPVVVDFW-APWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGV---RSIPTFLFFKNGKEVDRV   79 (93)
T ss_pred             HHHHhcCCcEEEEEE-CCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCc---ccccEEEEEECCEEEEEE
Confidence            333333456666655 4466777888889999888866699999999988899999999   678999999877655555


Q ss_pred             EEEEeehhhhhHh
Q 017971          344 SINVLKTRVCFFM  356 (363)
Q Consensus       344 ~~~~~~~~~~~~~  356 (363)
                      .+......+..++
T Consensus        80 ~g~~~~~~l~~~i   92 (93)
T cd02947          80 VGADPKEELEEFL   92 (93)
T ss_pred             ecCCCHHHHHHHh
Confidence            5555556666654

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.61  E-value=0.00075  Score=51.73  Aligned_cols=87  Identities=7%  Similarity=0.049  Sum_probs=68.6

Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCee--EEEEEEeehh
Q 017971          274 VLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYL--TVSINVLKTR  351 (363)
Q Consensus       274 ~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~--~~~~~~~~~~  351 (363)
                      +++++........+.+.+.+.+++..++.+.|..+|.+.++.+...+|+   ...|++++++.+++..  ...|-...++
T Consensus        25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v---~~vPt~~i~~~g~~~~~~~~~G~~~~~e  101 (113)
T cd02975          25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGV---ERVPTTIFLQDGGKDGGIRYYGLPAGYE  101 (113)
T ss_pred             EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCC---CcCCEEEEEeCCeecceEEEEecCchHH
Confidence            3344444455667788889988888876699999999999999999999   6789999998754322  5778888899


Q ss_pred             hhhHhhhhhcCC
Q 017971          352 VCFFMLTLLQFS  363 (363)
Q Consensus       352 ~~~~~~~~~~~~  363 (363)
                      +..|+..++.-|
T Consensus       102 l~~~i~~i~~~~  113 (113)
T cd02975         102 FASLIEDIVRVS  113 (113)
T ss_pred             HHHHHHHHHhcC
Confidence            999999888654

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.00041  Score=60.88  Aligned_cols=105  Identities=10%  Similarity=0.146  Sum_probs=85.1

Q ss_pred             CCcccCChhhHHh--hhcCC-CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCC
Q 017971          253 PLSVPINQDTLNL--LKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKL  328 (363)
Q Consensus       253 p~~~~lt~~~~~~--l~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~  328 (363)
                      |.+.++|..|++.  +..+. .|+++.|... -.....++...|.+++..++| +.++.||++..+.+...||+   ...
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap-~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi---qsI   98 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAP-WCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV---QSI   98 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCC-CCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc---CcC
Confidence            4478888888886  44444 4888888755 677778999999999999999 99999999999999999999   789


Q ss_pred             CeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          329 PKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       329 P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      |+++.+.-..----+.|-.-.+-|++|+.+++.
T Consensus        99 PtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~  131 (304)
T COG3118          99 PTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLP  131 (304)
T ss_pred             CeEEEeeCCcCccccCCCCcHHHHHHHHHHhcC
Confidence            999988876555556666666778888877764

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=97.59  E-value=0.00075  Score=51.70  Aligned_cols=86  Identities=14%  Similarity=0.158  Sum_probs=64.7

Q ss_pred             CcccCChhhHHhhhcCC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          254 LSVPINQDTLNLLKDDK---RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      .+.+++..++.......   .++++.|+. ......+.+...+.++|.+++++.|+.||+++. .+++.+++   ...|+
T Consensus         5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a-~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i---~~~Pt   79 (113)
T cd02957           5 EVREISSKEFLEEVTKASKGTRVVVHFYE-PGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDI---KVLPT   79 (113)
T ss_pred             eEEEEcHHHHHHHHHccCCCCEEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCC---CcCCE
Confidence            45566776676543332   566666654 466677788999999999999999999999987 89999999   68999


Q ss_pred             EEEEeCCCCeeEEE
Q 017971          331 MVVWDGNENYLTVS  344 (363)
Q Consensus       331 ~vi~~~~~~y~~~~  344 (363)
                      ++++..........
T Consensus        80 ~~~f~~G~~v~~~~   93 (113)
T cd02957          80 LLVYKNGELIDNIV   93 (113)
T ss_pred             EEEEECCEEEEEEe
Confidence            99998764444433

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=97.58  E-value=0.0011  Score=49.27  Aligned_cols=90  Identities=13%  Similarity=0.091  Sum_probs=63.6

Q ss_pred             ChhhHHHhHcC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCcC-cCCEE
Q 017971           49 DESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEID-AFPTL  121 (363)
Q Consensus        49 ~~~~f~~~l~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~-~~Pt~  121 (363)
                      +.+.+++++++  .++++|.=+++.|+-+......|++......+.   +.++-+|.-++++    ++.+|||. .-|.+
T Consensus         6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~   82 (105)
T PF11009_consen    6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRPVSNAIAEDFGVKHESPQV   82 (105)
T ss_dssp             SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred             CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence            45778888855  789999999999999999999999998765443   8899999988765    57789996 68999


Q ss_pred             EEEeCCEEEe--ecCCCCHHHH
Q 017971          122 KIFMHGIPTE--YYGPRKAELL  141 (363)
Q Consensus       122 ~~~~~g~~~~--y~g~~~~~~i  141 (363)
                      +++++|+.+-  -.+..+.+.|
T Consensus        83 ili~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   83 ILIKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             EEEETTEEEEEEEGGG-SHHHH
T ss_pred             EEEECCEEEEECccccCCHHhc
Confidence            9999998763  2344555444

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.58  E-value=0.00037  Score=46.66  Aligned_cols=55  Identities=27%  Similarity=0.404  Sum_probs=41.4

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCcCcCCEEEEEeCCEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTLKIFMHGIP  129 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~~~~~g~~  129 (363)
                      ++.|+.+||++|++....+++       .+  +.+-.+|.+.+++..+.    .+..++|++++  +|+.
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~-------~~--i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~   59 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE-------KG--IPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF   59 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-------TT--BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHH-------cC--CeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence            477999999999998877743       22  77888898887544333    49999999986  6553

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.58  E-value=0.00079  Score=57.36  Aligned_cols=88  Identities=15%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             CCCeEEE-EEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------------------------cchhhh
Q 017971           59 SFDYILV-DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------------------------KYSRLA  110 (363)
Q Consensus        59 ~~~~~lv-~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------------------------~~~~l~  110 (363)
                      +++.++| .|++.||+.|....+.+.+..+++++.+  +.+..|.++                           .+.+++
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia  103 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA  103 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence            3455544 6899999999999999999988887543  444444332                           335677


Q ss_pred             hhCCcC------cCCEEEEEeCCEEEe----e--cCCCCHHHHHHHHHhh
Q 017971          111 SKQEID------AFPTLKIFMHGIPTE----Y--YGPRKAELLVRYLKKF  148 (363)
Q Consensus       111 ~~~~i~------~~Pt~~~~~~g~~~~----y--~g~~~~~~i~~~i~~~  148 (363)
                      +.||+.      ..|+.+++..+..+.    |  .+.++.+++++.++..
T Consensus       104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l  153 (202)
T PRK13190        104 REYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL  153 (202)
T ss_pred             HHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            788874      589999996443332    2  3467888888887654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.57  E-value=0.00053  Score=67.30  Aligned_cols=98  Identities=18%  Similarity=0.232  Sum_probs=76.0

Q ss_pred             EEcChhhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971           46 IELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        46 ~~l~~~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      ..|+++..+.+-+=+ +.-+-.|+++.|++|......+.+++..    +++|..-.+|..++++++++|++.++|++++ 
T Consensus       101 ~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~----~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i-  175 (517)
T PRK15317        101 PKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL----NPNITHTMIDGALFQDEVEARNIMAVPTVFL-  175 (517)
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh----CCCceEEEEEchhCHhHHHhcCCcccCEEEE-
Confidence            445555555544323 4558889999999998888888777753    4469999999999999999999999999975 


Q ss_pred             eCCEEEeecCCCCHHHHHHHHHhhcC
Q 017971          125 MHGIPTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       125 ~~g~~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                       +|+ ..+.|..+.+++.+.+.+..+
T Consensus       176 -~~~-~~~~g~~~~~~~~~~~~~~~~  199 (517)
T PRK15317        176 -NGE-EFGQGRMTLEEILAKLDTGAA  199 (517)
T ss_pred             -CCc-EEEecCCCHHHHHHHHhcccc
Confidence             554 347899999999998876543

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00063  Score=53.68  Aligned_cols=106  Identities=13%  Similarity=0.167  Sum_probs=85.8

Q ss_pred             CCCcccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          252 LPLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       252 ~p~~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      .+.+...+.+.++. +.++..|+++-|... -.-..+.+...|.+++.++.+ +.|+.+|.+++.++...|+|   ...|
T Consensus        42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~-WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I---~avP  117 (150)
T KOG0910|consen   42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAE-WCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEI---SAVP  117 (150)
T ss_pred             cccccccCHHHHHHHHHccCCCEEEEEecC-cCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcce---eeee
Confidence            34556666666665 567778888777643 555567889999999999988 99999999999999999999   6789


Q ss_pred             eEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++++++..+--..-|-+..+-++.++..+|.
T Consensus       118 tvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  118 TVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            99999999877777888888888888877763

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.52  E-value=0.0003  Score=48.80  Aligned_cols=67  Identities=22%  Similarity=0.294  Sum_probs=44.5

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC----CcCcCCEEEEEeCCEEEeecCCCCHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ----EIDAFPTLKIFMHGIPTEYYGPRKAE  139 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~----~i~~~Pt~~~~~~g~~~~y~g~~~~~  139 (363)
                      ++.|+++||++|++..+.+.+.         ++.+..+|.+.++...+.+    ++.++|++.+  +|.  ...| .+..
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~--~i~g-~~~~   67 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE--HLSG-FRPD   67 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE--EEec-CCHH
Confidence            5779999999999987776652         2666777877665544433    6889999976  443  2223 4455


Q ss_pred             HHHHH
Q 017971          140 LLVRY  144 (363)
Q Consensus       140 ~i~~~  144 (363)
                      .|.++
T Consensus        68 ~l~~~   72 (73)
T cd02976          68 KLRAL   72 (73)
T ss_pred             HHHhh
Confidence            55554

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=97.52  E-value=0.00069  Score=53.91  Aligned_cols=44  Identities=18%  Similarity=0.227  Sum_probs=35.5

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      .+++++|.|| +.||+.|....|.+.++.+.++..  .+.+..|..+
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d   65 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVD   65 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCC
Confidence            5689999999 789999999999999999988543  3666666554

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=97.49  E-value=0.0015  Score=48.48  Aligned_cols=87  Identities=15%  Similarity=0.163  Sum_probs=65.2

Q ss_pred             hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEE
Q 017971          266 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVS  344 (363)
Q Consensus       266 l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~  344 (363)
                      +...++++++.|. .......+...+.+.++++++.+ +.+..+|.++.+.+.+.+++   ...|++++++.++......
T Consensus         9 ~~~~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v---~~vPt~~i~~~g~~v~~~~   84 (97)
T cd02949           9 YHESDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI---MGTPTVQFFKDKELVKEIS   84 (97)
T ss_pred             HHhCCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC---eeccEEEEEECCeEEEEEe
Confidence            4455555665555 45777778888899999988876 99999999988999999999   6899999998654555566


Q ss_pred             EEEeehhhhhHh
Q 017971          345 INVLKTRVCFFM  356 (363)
Q Consensus       345 ~~~~~~~~~~~~  356 (363)
                      +...++.+..|+
T Consensus        85 g~~~~~~~~~~l   96 (97)
T cd02949          85 GVKMKSEYREFI   96 (97)
T ss_pred             CCccHHHHHHhh
Confidence            655555555543

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=97.48  E-value=0.0019  Score=48.44  Aligned_cols=93  Identities=14%  Similarity=0.124  Sum_probs=68.5

Q ss_pred             ChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971          259 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG  336 (363)
Q Consensus       259 t~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~  336 (363)
                      |.+++..+..+++++++.|+. .-....+.+...+.+++..+++  +.|+.+|.+ .+..++.+++   ...|++++++.
T Consensus         6 ~~~~~~~~i~~~~~vvv~F~a-~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v---~~~Pt~~~~~~   80 (102)
T cd02948           6 NQEEWEELLSNKGLTVVDVYQ-EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG---KCEPTFLFYKN   80 (102)
T ss_pred             CHHHHHHHHccCCeEEEEEEC-CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC---CcCcEEEEEEC
Confidence            456777766677777777664 4667777888889999988874  789999998 6788999999   67899999985


Q ss_pred             CCCeeEEEEEEeehhhhhHhh
Q 017971          337 NENYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       337 ~~~y~~~~~~~~~~~~~~~~~  357 (363)
                      ........+ ...+.+..++.
T Consensus        81 g~~~~~~~G-~~~~~~~~~i~  100 (102)
T cd02948          81 GELVAVIRG-ANAPLLNKTIT  100 (102)
T ss_pred             CEEEEEEec-CChHHHHHHHh
Confidence            544555555 35555655554

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>KOG3414 consensus Component of the U4/U6

Probab=97.47  E-value=0.0013  Score=49.77  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=67.6

Q ss_pred             hhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971           50 ESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG  127 (363)
Q Consensus        50 ~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  127 (363)
                      ....++++  ...+.++|.|-..|.+.|.+....+.++++.+.+.   ..++-+|.++-+++.+-|++...|++++|-++
T Consensus        11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~~~~~~~~l~~p~tvmfFfn~   87 (142)
T KOG3414|consen   11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN   87 (142)
T ss_pred             HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence            35566666  45578999999999999999999999999998765   78888999999999999999999999999877


Q ss_pred             EEE
Q 017971          128 IPT  130 (363)
Q Consensus       128 ~~~  130 (363)
                      +.+
T Consensus        88 kHm   90 (142)
T KOG3414|consen   88 KHM   90 (142)
T ss_pred             ceE
Confidence            644

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.00093  Score=50.10  Aligned_cols=73  Identities=23%  Similarity=0.423  Sum_probs=54.6

Q ss_pred             hhHHHhH---cCCCeEEEEEECC--------CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------hhhhhh
Q 017971           51 SNFDSAI---SSFDYILVDFYAP--------WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------SRLASK  112 (363)
Q Consensus        51 ~~f~~~l---~~~~~~lv~fy~~--------~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------~~l~~~  112 (363)
                      +.|++.+   .+++.++|+|+++        ||+.|.+..|.+.++-+...   .++.|..|+..+-       ..+-..
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap---~~~~~v~v~VG~rp~Wk~p~n~FR~d   89 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP---EDVHFVHVYVGNRPYWKDPANPFRKD   89 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC---CceEEEEEEecCCCcccCCCCccccC
Confidence            5566665   3456699999984        99999999999999887543   3599999998643       344555


Q ss_pred             CCc-CcCCEEEEEeC
Q 017971          113 QEI-DAFPTLKIFMH  126 (363)
Q Consensus       113 ~~i-~~~Pt~~~~~~  126 (363)
                      .++ .++||+.=+.+
T Consensus        90 ~~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   90 PGILTAVPTLLRWKR  104 (128)
T ss_pred             CCceeecceeeEEcC
Confidence            666 88999887653

>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX)

Probab=97.42  E-value=0.0012  Score=48.35  Aligned_cols=99  Identities=16%  Similarity=0.246  Sum_probs=67.6

Q ss_pred             cCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----C----CC--cEEEEEecc-CchhHHhhc-CCCC
Q 017971          257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA----N----RE--LVFCYVGIK-QFADFADTF-EANK  324 (363)
Q Consensus       257 ~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~----~----~~--~~f~~vd~~-~~~~~~~~~-gi~~  324 (363)
                      .+|+.+...+..  .|++++|.+.++.-..+.....++.+|++    +    .+  +.|.+ +++ +-...++.| ++  
T Consensus         3 ~Lse~~a~~Ln~--~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~-a~ede~tdsLRDf~nL--   77 (116)
T cd03071           3 ELSESNAVQLNE--GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFV-AGEDDMTDSLRDYTNL--   77 (116)
T ss_pred             cccHHHHHhhcC--CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeee-eccchHHHHHHHhcCC--
Confidence            455556655544  58888888665554577777888877754    1    12  44443 333 334555554 77  


Q ss_pred             CCCCCeEEEEeCC--CCeeEEEEEEeehhhhhHhhhhh
Q 017971          325 KSKLPKMVVWDGN--ENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       325 ~~~~P~~vi~~~~--~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +..-|.++|++..  ++|-.+..+++++-+.+|+..+|
T Consensus        78 ~d~~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~yl  115 (116)
T cd03071          78 PEAAPLLTILDMSARAKYVMDVEEITPAIVEAFVSDFL  115 (116)
T ss_pred             CccCceEEEEeccccceEeCchHhcCHHHHHHHHHHhh
Confidence            4677999999975  56777788899999999999887

NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=97.42  E-value=0.0015  Score=49.70  Aligned_cols=97  Identities=9%  Similarity=0.145  Sum_probs=68.7

Q ss_pred             cccCChhhHHhhh---cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccC-chhHHh-hcCCCCCCC
Q 017971          255 SVPINQDTLNLLK---DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ-FADFAD-TFEANKKSK  327 (363)
Q Consensus       255 ~~~lt~~~~~~l~---~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~-~~~~~~-~~gi~~~~~  327 (363)
                      +.+++.++++.+.   ..++++++.|+ .......+++...+.+++..+++  +.++.+|++. ...++. .+++   ..
T Consensus         3 v~~~~~~~~~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v---~~   78 (109)
T cd02993           3 VVTLSRAEIEALAKGERRNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL---KS   78 (109)
T ss_pred             ceeccHHHHHHHHhhhhcCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC---Cc
Confidence            5678888888765   34567777666 44677778888889999988765  8999999986 466775 4888   67


Q ss_pred             CCeEEEEeCCC-CeeEEEEE-EeehhhhhH
Q 017971          328 LPKMVVWDGNE-NYLTVSIN-VLKTRVCFF  355 (363)
Q Consensus       328 ~P~~vi~~~~~-~y~~~~~~-~~~~~~~~~  355 (363)
                      .|++++++.++ +-+..+++ ...+-+..|
T Consensus        79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f  108 (109)
T cd02993          79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMF  108 (109)
T ss_pred             CCEEEEEcCCCCCceeccCCCCCHHHHHhh
Confidence            99999998874 33344442 344444444

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=97.39  E-value=0.00059  Score=56.91  Aligned_cols=43  Identities=19%  Similarity=0.189  Sum_probs=36.5

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      .+++++|.|||+||+.|+ ..|.++++.+++.+.  .+.+..+.|.
T Consensus        24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~--gl~Vlg~p~n   66 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ--GFVVLGFPCN   66 (183)
T ss_pred             CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC--CeEEEEeecc
Confidence            468999999999999996 488999999988654  3888889885

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.37  E-value=0.00058  Score=54.49  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=37.5

Q ss_pred             CCCeEEEEEECCCChh-hhhHHHHHHHHHHHhhcCC-CCeEEEEEeCc
Q 017971           59 SFDYILVDFYAPWCGH-CKRLAPQLDEAAPILAKLK-EPIVIAKVDAD  104 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~-C~~~~~~~~~~a~~~~~~~-~~v~~~~vd~~  104 (363)
                      ++++++|.||++||+. |....+.+.++.+.+.+.+ .++.+..|..+
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            5689999999999997 9999999999999886543 34777766653

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.34  E-value=0.0012  Score=49.38  Aligned_cols=92  Identities=17%  Similarity=0.116  Sum_probs=63.3

Q ss_pred             CCCeEEcChhhHHHhHcCCCeEEEEEECCC--ChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           42 DGKVIELDESNFDSAISSFDYILVDFYAPW--CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~--C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      ......++.++++.++..++..++.|..+.  |+.|....=.+-++.+.+.+   .+..+.++-..+..+..+||+..+|
T Consensus         8 ~~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~---~~~~avv~~~~e~~L~~r~gv~~~P   84 (107)
T PF07449_consen    8 RHGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG---RFRGAVVARAAERALAARFGVRRWP   84 (107)
T ss_dssp             T-TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT---SEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred             hcCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC---ccceEEECchhHHHHHHHhCCccCC
Confidence            456788899999999988777665554432  34444433344445444444   4788888877889999999999999


Q ss_pred             EEEEEeCCEEEe-ecCCC
Q 017971          120 TLKIFMHGIPTE-YYGPR  136 (363)
Q Consensus       120 t~~~~~~g~~~~-y~g~~  136 (363)
                      ++.++++|+... -.|.+
T Consensus        85 aLvf~R~g~~lG~i~gi~  102 (107)
T PF07449_consen   85 ALVFFRDGRYLGAIEGIR  102 (107)
T ss_dssp             EEEEEETTEEEEEEESSS
T ss_pred             eEEEEECCEEEEEecCee
Confidence            999999998775 34543

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.33  E-value=0.0025  Score=51.00  Aligned_cols=96  Identities=9%  Similarity=0.102  Sum_probs=72.7

Q ss_pred             hHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC--chhHHhhcCCCCCCCCCeEEEEeCCC
Q 017971          262 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDGNE  338 (363)
Q Consensus       262 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P~~vi~~~~~  338 (363)
                      .++.....++++++.|+. .-....+.+...+.++++.+.+ +.|+.+|.+.  +..+++.|++   ...|++++++++|
T Consensus        12 ~~~~a~~~gk~vvV~F~A-~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V---~~iPt~v~~~~~G   87 (142)
T cd02950          12 PPEVALSNGKPTLVEFYA-DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV---DGIPHFVFLDREG   87 (142)
T ss_pred             CHHHHHhCCCEEEEEEEC-CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC---CCCCEEEEECCCC
Confidence            344445566777777764 4677778888999999998876 7788877664  4578899999   6799999998876


Q ss_pred             C-eeEEEEEEeehhhhhHhhhhhc
Q 017971          339 N-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       339 ~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      + .....|....+.++..+..+++
T Consensus        88 ~~v~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          88 NEEGQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHc
Confidence            4 5566677777888888888775

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.33  E-value=0.0032  Score=47.39  Aligned_cols=89  Identities=17%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC--
Q 017971           49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH--  126 (363)
Q Consensus        49 ~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~--  126 (363)
                      +.+++++++...+.++|-|+..--.   .....|.++|+.+...   +.|+...   +..+.+.+++  -|++.+|++  
T Consensus         7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d---~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~   75 (104)
T cd03069           7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRES---FRFAHTS---DKQLLEKYGY--GEGVVLFRPPR   75 (104)
T ss_pred             CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhc---CEEEEEC---hHHHHHhcCC--CCceEEEechh
Confidence            4566888888888888888876544   5678899999887543   7887665   4567788888  788999943  


Q ss_pred             ------CEEEeecCCCCHHHHHHHHHhh
Q 017971          127 ------GIPTEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       127 ------g~~~~y~g~~~~~~i~~~i~~~  148 (363)
                            .....|.|..+.+.|.+|+...
T Consensus        76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          76 LSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             hhcccCcccccccCcCCHHHHHHHHHhh
Confidence                  2345699998999999999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=97.31  E-value=0.0015  Score=49.08  Aligned_cols=93  Identities=10%  Similarity=0.125  Sum_probs=69.2

Q ss_pred             hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC----CcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971          261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG  336 (363)
Q Consensus       261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~  336 (363)
                      ++++.+. .++++++.|+ .......+.+...+.+++.+++    ++.++.+|+..++.+++.+++   ...|+++++++
T Consensus         7 ~~~~~~~-~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I---~~~Pt~~l~~~   81 (104)
T cd03000           7 DSFKDVR-KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV---RGYPTIKLLKG   81 (104)
T ss_pred             hhhhhhc-cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC---ccccEEEEEcC
Confidence            4455543 3455655555 4467777777888888888763    288999999988999999999   67999999975


Q ss_pred             CCCeeEEEEEEeehhhhhHhhhh
Q 017971          337 NENYLTVSINVLKTRVCFFMLTL  359 (363)
Q Consensus       337 ~~~y~~~~~~~~~~~~~~~~~~~  359 (363)
                      + ......+....+.+..|+.++
T Consensus        82 ~-~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          82 D-LAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             C-CceeecCCCCHHHHHHHHHhh
Confidence            4 445567777888888888764

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.30  E-value=0.004  Score=54.83  Aligned_cols=87  Identities=14%  Similarity=0.137  Sum_probs=59.8

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----------------------------cchhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------------------KYSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l  109 (363)
                      +++++++.|| +.||+.|....+.+.+..+++++.+  +.+..|.++                            .+..+
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i  174 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV  174 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence            3467777777 7999999999999999998887554  333333332                            23467


Q ss_pred             hhhCCcC-----cCCEEEEEe-CCEEEe---e--cCCCCHHHHHHHHHh
Q 017971          110 ASKQEID-----AFPTLKIFM-HGIPTE---Y--YGPRKAELLVRYLKK  147 (363)
Q Consensus       110 ~~~~~i~-----~~Pt~~~~~-~g~~~~---y--~g~~~~~~i~~~i~~  147 (363)
                      ++.||+.     ..|+.++.. +|+...   |  ...++.+++.+-+..
T Consensus       175 akayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a  223 (261)
T PTZ00137        175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA  223 (261)
T ss_pred             HHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            8888985     479999986 565332   2  234677777776643

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.29  E-value=0.0018  Score=46.88  Aligned_cols=75  Identities=16%  Similarity=0.181  Sum_probs=50.6

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch----hhhhhCCc--CcCCEEEEEeCCEEEeecCCCC
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS----RLASKQEI--DAFPTLKIFMHGIPTEYYGPRK  137 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i--~~~Pt~~~~~~g~~~~y~g~~~  137 (363)
                      ++.|+.+||++|++....++++....    ..+.+-.+|.+.+.    ++.+..+-  .++|++++  +|+.+   |  .
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~----~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i---g--G   70 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIER----ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV---G--G   70 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCccc----CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe---c--C
Confidence            56799999999999998888765322    23677778876432    45555553  78999954  55432   2  2


Q ss_pred             HHHHHHHHHhhc
Q 017971          138 AELLVRYLKKFV  149 (363)
Q Consensus       138 ~~~i~~~i~~~~  149 (363)
                      .++|.++..++.
T Consensus        71 ~~dl~~~~~~~~   82 (86)
T TIGR02183        71 CTDFEQLVKENF   82 (86)
T ss_pred             HHHHHHHHHhcc
Confidence            467777776654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=97.29  E-value=0.0051  Score=53.78  Aligned_cols=161  Identities=12%  Similarity=0.163  Sum_probs=102.1

Q ss_pred             HHHHhcCCcccEEEeecCCh--------hHHHHHHHHhhhh---hHHH-HhhhcchhhhhhcCCCCCCeEEEEcCCCCCc
Q 017971          164 DFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKKK---AWFA-VAKDFSEDTMVLYDFDKVPALVALQPSYNEH  231 (363)
Q Consensus       164 ~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~  231 (363)
                      +|....+.. .|++-|+..+        +++.++...+++.   ++++ ...+.-+.++..+++.++|+|.+++.  +..
T Consensus        36 kFkdnkddd-iW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg--d~a  112 (468)
T KOG4277|consen   36 KFKDNKDDD-IWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG--DHA  112 (468)
T ss_pred             HhhhcccCC-eEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--Cee
Confidence            455444333 7999887543        4576776666652   2221 11234477899999999999999987  788


Q ss_pred             ccccCCCCHHHHHHHHHhhcCCCcccCChh--hHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEe
Q 017971          232 NIFYGPFDEEFLEEFIKQNFLPLSVPINQD--TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVG  309 (363)
Q Consensus       232 ~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd  309 (363)
                      ..|.|..+.++|.+|.....-|.+..++.+  .++.+...++|..++|- ....+    +.+.+-..|...  +.+++.-
T Consensus       113 ~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~G-tge~P----L~d~fidAASe~--~~~a~Ff  185 (468)
T KOG4277|consen  113 IDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFG-TGEGP----LFDAFIDAASEK--FSVARFF  185 (468)
T ss_pred             eecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEe-CCCCc----HHHHHHHHhhhh--eeeeeee
Confidence            899999999999999999999999988864  45567777777766553 22333    233444444332  3333332


Q ss_pred             ccCchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971          310 IKQFADFADTFEANKKSKLPKMVVWDGN  337 (363)
Q Consensus       310 ~~~~~~~~~~~gi~~~~~~P~~vi~~~~  337 (363)
                      ... ...+-...  +....|++.+++-.
T Consensus       186 Sas-eeVaPe~~--~~kempaV~VFKDe  210 (468)
T KOG4277|consen  186 SAS-EEVAPEEN--DAKEMPAVAVFKDE  210 (468)
T ss_pred             ccc-cccCCccc--chhhccceEEEccc
Confidence            211 11222221  22567999888765

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00056  Score=57.40  Aligned_cols=76  Identities=17%  Similarity=0.355  Sum_probs=66.0

Q ss_pred             HcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEe-ecCC
Q 017971           57 ISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGP  135 (363)
Q Consensus        57 l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~-y~g~  135 (363)
                      .++.+..++.||++||..|+.....+..+++..+    ++.+.+++.++.++++..+.+...|.+.++..|+.+. ..|.
T Consensus        14 ~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~   89 (227)
T KOG0911|consen   14 DQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGA   89 (227)
T ss_pred             HhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhcc
Confidence            3467889999999999999999999999998873    3999999999999999999999999999998887664 4444


Q ss_pred             C
Q 017971          136 R  136 (363)
Q Consensus       136 ~  136 (363)
                      .
T Consensus        90 ~   90 (227)
T KOG0911|consen   90 D   90 (227)
T ss_pred             C
Confidence            3

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=97.27  E-value=0.0042  Score=45.83  Aligned_cols=73  Identities=14%  Similarity=0.315  Sum_probs=55.7

Q ss_pred             hhHHhhhcCC--CcEEEEEEeCCChhhHHHHHHHHHHHHHh-CCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971          261 DTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASA-NRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN  337 (363)
Q Consensus       261 ~~~~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~l~~~a~~-~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~  337 (363)
                      +.+.......  +++++.|+ .......+.+...+.+++.+ +.++.|..+|....+.+++.+++   ...|++++++.+
T Consensus         3 ~~~~~~~~~~~~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i---~~~Pt~~~~~~g   78 (97)
T cd02984           3 EEFEELLKSDASKLLVLHFW-APWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI---TAVPTFVFFRNG   78 (97)
T ss_pred             HHHHHHHhhCCCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC---ccccEEEEEECC
Confidence            4445443333  56666665 45677778888899999988 44599999999998999999999   679999999754

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PRK15000 peroxidase; Provisional

Probab=97.26  E-value=0.0026  Score=54.08  Aligned_cols=87  Identities=14%  Similarity=0.147  Sum_probs=60.8

Q ss_pred             CCCeEEEEEECC-CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----------------------------cchhh
Q 017971           59 SFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------------------KYSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l  109 (363)
                      +++++++.||+. ||+.|....+.+.+..+++++.+  +.+..|.++                            .+.++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i  110 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI  110 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence            457999999995 99999999999999999887554  445444443                            23356


Q ss_pred             hhhCCcC------cCCEEEEEe-CCEEEe-ecC----CCCHHHHHHHHHh
Q 017971          110 ASKQEID------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKK  147 (363)
Q Consensus       110 ~~~~~i~------~~Pt~~~~~-~g~~~~-y~g----~~~~~~i~~~i~~  147 (363)
                      ++.|++.      ..|..+++. +|+... +.|    .++.+++.+.++.
T Consensus       111 a~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000        111 QKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             HHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            6678876      688888887 454332 222    4677777777654

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.26  E-value=0.0063  Score=46.77  Aligned_cols=79  Identities=20%  Similarity=0.232  Sum_probs=63.7

Q ss_pred             hhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971           50 ESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG  127 (363)
Q Consensus        50 ~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  127 (363)
                      .-..+++|  ++++.++|.|-.+|-+.|.+....+.++++.++..   ..++.||.++-+++.+.|.+..--|+++|-++
T Consensus         8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~rn   84 (133)
T PF02966_consen    8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVPDFNQMYELYDPCTVMFFFRN   84 (133)
T ss_dssp             HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTHCCHHHTTS-SSEEEEEEETT
T ss_pred             cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccchhhhcccccCCCeEEEEEecC
Confidence            45567776  66789999999999999999999999999998765   89999999999999999999954457777566


Q ss_pred             EEEe
Q 017971          128 IPTE  131 (363)
Q Consensus       128 ~~~~  131 (363)
                      +.+.
T Consensus        85 khm~   88 (133)
T PF02966_consen   85 KHMM   88 (133)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6543

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=97.24  E-value=0.0042  Score=50.14  Aligned_cols=89  Identities=13%  Similarity=0.247  Sum_probs=64.3

Q ss_pred             cccCChhhHHhhh-cC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCC----C
Q 017971          255 SVPINQDTLNLLK-DD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKK----S  326 (363)
Q Consensus       255 ~~~lt~~~~~~l~-~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~----~  326 (363)
                      +.+++.+++.... .+ +.++++.|+ .......+.+...+.++++++.+  +.|+.||.++++++++.+++ ..    .
T Consensus        30 v~~l~~~~f~~~l~~~~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V-~~~~~v~  107 (152)
T cd02962          30 IKYFTPKTLEEELERDKRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV-STSPLSK  107 (152)
T ss_pred             cEEcCHHHHHHHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc-eecCCcC
Confidence            4456666666543 23 234555555 44677788889999999998763  99999999999999999999 22    3


Q ss_pred             CCCeEEEEeCCCCeeEEEE
Q 017971          327 KLPKMVVWDGNENYLTVSI  345 (363)
Q Consensus       327 ~~P~~vi~~~~~~y~~~~~  345 (363)
                      +.|++++++.........+
T Consensus       108 ~~PT~ilf~~Gk~v~r~~G  126 (152)
T cd02962         108 QLPTIILFQGGKEVARRPY  126 (152)
T ss_pred             CCCEEEEEECCEEEEEEec
Confidence            4899999986655555544

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=97.19  E-value=0.0031  Score=47.40  Aligned_cols=90  Identities=8%  Similarity=0.065  Sum_probs=64.8

Q ss_pred             HHhhhcCCCcEEEEEEeCCChhhHHHHHHHH---HHHHHhCC-CcEEEEEeccC----chhHHhhcCCCCCCCCCeEEEE
Q 017971          263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANR-ELVFCYVGIKQ----FADFADTFEANKKSKLPKMVVW  334 (363)
Q Consensus       263 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~~~~-~~~f~~vd~~~----~~~~~~~~gi~~~~~~P~~vi~  334 (363)
                      +......++++++.|.. ......+.+...+   .+++..++ ++.++.+|..+    .+.+++.+++   ...|+++++
T Consensus         4 ~~~~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i---~~~Pti~~~   79 (104)
T cd02953           4 LAQALAQGKPVFVDFTA-DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV---FGPPTYLFY   79 (104)
T ss_pred             HHHHHHcCCeEEEEEEc-chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC---CCCCEEEEE
Confidence            44444566777777664 4566666666555   45666666 49999999875    5678999999   679999999


Q ss_pred             eC-CC-CeeEEEEEEeehhhhhHh
Q 017971          335 DG-NE-NYLTVSINVLKTRVCFFM  356 (363)
Q Consensus       335 ~~-~~-~y~~~~~~~~~~~~~~~~  356 (363)
                      ++ +| ......+....+.+..++
T Consensus        80 ~~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          80 GPGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCCCCCCcccccccCHHHHHHHh
Confidence            97 55 467777888887777654

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.17  E-value=0.0034  Score=61.58  Aligned_cols=96  Identities=17%  Similarity=0.221  Sum_probs=73.7

Q ss_pred             EEcChhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971           46 IELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        46 ~~l~~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      ..|+++..+.+-+ +.+.-+-.|+++.|++|......+.+++..    +++|..-.+|....++++.+|++.++|++++ 
T Consensus       102 ~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~----~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i-  176 (515)
T TIGR03140       102 PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL----NPNISHTMIDGALFQDEVEALGIQGVPAVFL-  176 (515)
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh----CCCceEEEEEchhCHHHHHhcCCcccCEEEE-
Confidence            4556666555443 234568889999999997777777666643    4568899999999999999999999999976 


Q ss_pred             eCCEEEeecCCCCHHHHHHHHHhh
Q 017971          125 MHGIPTEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       125 ~~g~~~~y~g~~~~~~i~~~i~~~  148 (363)
                       +|+ ..+.|..+.+++.+.+.+.
T Consensus       177 -~~~-~~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       177 -NGE-EFHNGRMDLAELLEKLEET  198 (515)
T ss_pred             -CCc-EEEecCCCHHHHHHHHhhc
Confidence             554 3478989988888887655

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=97.14  E-value=0.0091  Score=44.81  Aligned_cols=83  Identities=14%  Similarity=0.159  Sum_probs=59.3

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCch---hHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEE
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFA---DFADTFEANKKSKLPKMVVWDGNENYLTVSIN  346 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~---~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~  346 (363)
                      ++++++.|+. .-....+.+...+.+++++++++.|+.+|+++.+   .+++.+++   ...|++++++.........| 
T Consensus        15 ~k~vvv~F~a-~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V---~~~Pt~~~~~~G~~v~~~~G-   89 (103)
T cd02985          15 GRLVVLEFAL-KHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI---IEVPHFLFYKDGEKIHEEEG-   89 (103)
T ss_pred             CCEEEEEEEC-CCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC---CcCCEEEEEeCCeEEEEEeC-
Confidence            5666666654 4566777888999999999977999999998753   78999999   67999999954434444444 


Q ss_pred             EeehhhhhHhh
Q 017971          347 VLKTRVCFFML  357 (363)
Q Consensus       347 ~~~~~~~~~~~  357 (363)
                      ....++++-++
T Consensus        90 ~~~~~l~~~~~  100 (103)
T cd02985          90 IGPDELIGDVL  100 (103)
T ss_pred             CCHHHHHHHHH
Confidence            33445554443

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PRK13599 putative peroxiredoxin; Provisional

Probab=97.12  E-value=0.0058  Score=52.48  Aligned_cols=87  Identities=15%  Similarity=0.206  Sum_probs=60.1

Q ss_pred             CCe-EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------------chhhhh
Q 017971           60 FDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLAS  111 (363)
Q Consensus        60 ~~~-~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~  111 (363)
                      ++. +|+.|++.||+.|....+.+.++.+++.+.+  +.+..+.++.                           +.++++
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~  105 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSN  105 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHH
Confidence            344 4678999999999999999999999887554  4555454432                           345677


Q ss_pred             hCCcC-------cCCEEEEEeC-CEEE--e-e--cCCCCHHHHHHHHHhh
Q 017971          112 KQEID-------AFPTLKIFMH-GIPT--E-Y--YGPRKAELLVRYLKKF  148 (363)
Q Consensus       112 ~~~i~-------~~Pt~~~~~~-g~~~--~-y--~g~~~~~~i~~~i~~~  148 (363)
                      .||+.       ..|+.+++.. |+..  . |  ...+..+++.+.+...
T Consensus       106 ~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        106 QLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             HcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            78873       5799999864 5432  1 3  2246778888777643

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.10  E-value=0.0038  Score=50.29  Aligned_cols=30  Identities=37%  Similarity=0.656  Sum_probs=26.1

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHh
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPIL   89 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~   89 (363)
                      .+..++.|+.++|++|+++.|.+.++....
T Consensus         5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~   34 (154)
T cd03023           5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED   34 (154)
T ss_pred             CCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence            468899999999999999999999876543

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.09  E-value=0.002  Score=45.96  Aligned_cols=57  Identities=23%  Similarity=0.380  Sum_probs=41.0

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-----hhhhhCCcCcCCEEEEEeCCEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----RLASKQEIDAFPTLKIFMHGIP  129 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~~  129 (363)
                      ++.|+++||++|++..+.+.++..       .+.+..+|..++.     .+.+..+..++|++  |.+|+.
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~   63 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF   63 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence            578999999999999999888653       2556666665542     34455688899997  456654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.09  E-value=0.004  Score=54.90  Aligned_cols=81  Identities=16%  Similarity=0.208  Sum_probs=56.4

Q ss_pred             CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe--------------------------------------
Q 017971           61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD--------------------------------------  102 (363)
Q Consensus        61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd--------------------------------------  102 (363)
                      +..++.|..+.|++|+++++++....+.  +   +|.+-.+.                                      
T Consensus       118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~--g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~  192 (251)
T PRK11657        118 PRIVYVFADPNCPYCKQFWQQARPWVDS--G---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK  192 (251)
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHhhc--C---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence            4678899999999999999987765432  1   12111110                                      


Q ss_pred             --------C----ccchhhhhhCCcCcCCEEEEEe-CCEEEeecCCCCHHHHHHHHH
Q 017971          103 --------A----DKYSRLASKQEIDAFPTLKIFM-HGIPTEYYGPRKAELLVRYLK  146 (363)
Q Consensus       103 --------~----~~~~~l~~~~~i~~~Pt~~~~~-~g~~~~y~g~~~~~~i~~~i~  146 (363)
                              |    .++..+.+++|++++|++++-. +|......|..+++.|.+.+.
T Consensus       193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence                    1    1133467779999999999875 365556789888998888764

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.08  E-value=0.011  Score=44.21  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=69.3

Q ss_pred             eEEc-ChhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           45 VIEL-DESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        45 v~~l-~~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      +..+ +.++++++++ +++..+|-|+..--+   .....|.++|+.+...   +.|+...   +.++.+.+++. .|.+.
T Consensus         2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d---~~F~~~~---~~~~~~~~~~~-~~~i~   71 (102)
T cd03066           2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPY---IKFFATF---DSKVAKKLGLK-MNEVD   71 (102)
T ss_pred             ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcC---CEEEEEC---cHHHHHHcCCC-CCcEE
Confidence            3455 4566899998 788888888876544   5667899999887543   7787655   45667777764 79999


Q ss_pred             EEeC-C-EEEee-cCCCCHHHHHHHHHhh
Q 017971          123 IFMH-G-IPTEY-YGPRKAELLVRYLKKF  148 (363)
Q Consensus       123 ~~~~-g-~~~~y-~g~~~~~~i~~~i~~~  148 (363)
                      ++++ + ....| .|..+.+.|.+||...
T Consensus        72 l~~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          72 FYEPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             EeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            9975 3 34569 7888999999999754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.03  E-value=0.0079  Score=51.68  Aligned_cols=87  Identities=11%  Similarity=0.141  Sum_probs=58.5

Q ss_pred             CCeEE-EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------------------------cchhhhh
Q 017971           60 FDYIL-VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------------------------KYSRLAS  111 (363)
Q Consensus        60 ~~~~l-v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------------------------~~~~l~~  111 (363)
                      ++.++ +.|+++||+.|....+.+.+.++++++.+  +.+..+.++                           .+.++++
T Consensus        33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~  110 (215)
T PRK13191         33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK  110 (215)
T ss_pred             CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence            45444 47899999999999999999999987654  555555443                           2235667


Q ss_pred             hCCcC-------cCCEEEEEeC-CEEEe---e--cCCCCHHHHHHHHHhh
Q 017971          112 KQEID-------AFPTLKIFMH-GIPTE---Y--YGPRKAELLVRYLKKF  148 (363)
Q Consensus       112 ~~~i~-------~~Pt~~~~~~-g~~~~---y--~g~~~~~~i~~~i~~~  148 (363)
                      .||+.       ..|+.+++.. |....   |  .-.++.+++.+.++..
T Consensus       111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            77763       3677888864 44321   2  2346788888877654

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.00  E-value=0.0065  Score=49.51  Aligned_cols=84  Identities=21%  Similarity=0.302  Sum_probs=59.0

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc--------------------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY--------------------------------  106 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------------------------------  106 (363)
                      ..++.++.|.+..|++|+++.+.+.++.+.+-+ .+++.+...+.-..                                
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   89 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYID-PGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ   89 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC-CCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            347889999999999999999999988887621 22477776653100                                


Q ss_pred             ------------------------------------hhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHh
Q 017971          107 ------------------------------------SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK  147 (363)
Q Consensus       107 ------------------------------------~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~  147 (363)
                                                          ...+++.+|.++||+++  +|+.  +.|..+.++|.+.|++
T Consensus        90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~--~~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY--VVGPYTIEELKELIDK  162 (162)
T ss_dssp             HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE--EETTTSHHHHHHHHHH
T ss_pred             hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE--eCCCCCHHHHHHHHcC
Confidence                                                02344568899999887  7765  4678888888888764

...

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=96.97  E-value=0.0071  Score=51.56  Aligned_cols=85  Identities=15%  Similarity=0.131  Sum_probs=56.8

Q ss_pred             eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------------chhhhhhCC
Q 017971           62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLASKQE  114 (363)
Q Consensus        62 ~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~  114 (363)
                      .+|+.|++.||+.|....+.+.++.+++++.+  +.+..|.++.                           +..+++.||
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg  105 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG  105 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence            44567999999999999999999999987654  5555555442                           245677888


Q ss_pred             cC----cC----CEEEEEe-CCEEE-eecC----CCCHHHHHHHHHhh
Q 017971          115 ID----AF----PTLKIFM-HGIPT-EYYG----PRKAELLVRYLKKF  148 (363)
Q Consensus       115 i~----~~----Pt~~~~~-~g~~~-~y~g----~~~~~~i~~~i~~~  148 (363)
                      +.    +.    |+.+++. +|+.. .+.+    .++.+++.+.+...
T Consensus       106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016         106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            75    23    4567775 45432 1222    45677777776543

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13189 peroxiredoxin; Provisional

Probab=96.96  E-value=0.0096  Score=51.45  Aligned_cols=87  Identities=16%  Similarity=0.201  Sum_probs=57.7

Q ss_pred             CC-eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---------------------------cchhhhh
Q 017971           60 FD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------------------------KYSRLAS  111 (363)
Q Consensus        60 ~~-~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---------------------------~~~~l~~  111 (363)
                      ++ .+|+.|++.||+.|....+.+.+.++++++.+  +.+..|.++                           .+..+++
T Consensus        35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~  112 (222)
T PRK13189         35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK  112 (222)
T ss_pred             CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence            45 44557789999999999999999999887554  444444332                           2345677


Q ss_pred             hCCcC-------cCCEEEEEe-CCEEE--e-e--cCCCCHHHHHHHHHhh
Q 017971          112 KQEID-------AFPTLKIFM-HGIPT--E-Y--YGPRKAELLVRYLKKF  148 (363)
Q Consensus       112 ~~~i~-------~~Pt~~~~~-~g~~~--~-y--~g~~~~~~i~~~i~~~  148 (363)
                      .||+.       ..|+.+++. +|...  . |  ...++.+++.+.+...
T Consensus       113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78864       457788886 45432  1 2  2456777777777544

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=96.93  E-value=0.0083  Score=45.97  Aligned_cols=80  Identities=10%  Similarity=0.084  Sum_probs=59.7

Q ss_pred             cccCChhhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---C-cEEEEEecc--CchhHHhhcCCCCCCC
Q 017971          255 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR---E-LVFCYVGIK--QFADFADTFEANKKSK  327 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~---~-~~f~~vd~~--~~~~~~~~~gi~~~~~  327 (363)
                      +.+++..+++....+ ++++++.|+ .......+.+...+.+++.+++   + +.|+.+|+.  ..+.+++.+++   ..
T Consensus         3 v~~l~~~~f~~~i~~~~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i---~~   78 (114)
T cd02992           3 VIVLDAASFNSALLGSPSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV---TG   78 (114)
T ss_pred             eEECCHHhHHHHHhcCCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC---CC
Confidence            457788888875444 445666555 4466677788888888888654   3 889999975  35678999999   67


Q ss_pred             CCeEEEEeCCC
Q 017971          328 LPKMVVWDGNE  338 (363)
Q Consensus       328 ~P~~vi~~~~~  338 (363)
                      .|+++++++++
T Consensus        79 ~Pt~~lf~~~~   89 (114)
T cd02992          79 YPTLRYFPPFS   89 (114)
T ss_pred             CCEEEEECCCC
Confidence            89999998774

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.91  E-value=0.0037  Score=42.95  Aligned_cols=56  Identities=21%  Similarity=0.293  Sum_probs=39.9

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh----hCCcCcCCEEEEEeCCEEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~----~~~i~~~Pt~~~~~~g~~~  130 (363)
                      ++.|+++||++|++..+.+.+..         +.+-.+|...+++..+    ..+...+|+++  .+|+.+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~i   61 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFI   61 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence            56789999999999988877542         5677888877665433    34667888774  466543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PHA02278 thioredoxin-like protein

Probab=96.89  E-value=0.013  Score=43.88  Aligned_cols=90  Identities=11%  Similarity=0.106  Sum_probs=65.8

Q ss_pred             hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCc----hhHHhhcCCCCCCCCCeEEEEe
Q 017971          261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF----ADFADTFEANKKSKLPKMVVWD  335 (363)
Q Consensus       261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~----~~~~~~~gi~~~~~~P~~vi~~  335 (363)
                      ..+......++++++.|+.+ -....+.+...+.+++.++.+ ..|..+|.+..    +.+.+.+++   ...|++++++
T Consensus         5 ~~~~~~i~~~~~vvV~F~A~-WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I---~~iPT~i~fk   80 (103)
T PHA02278          5 VDLNTAIRQKKDVIVMITQD-NCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI---MSTPVLIGYK   80 (103)
T ss_pred             HHHHHHHhCCCcEEEEEECC-CCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC---ccccEEEEEE
Confidence            44555545667777777644 667778888899998887544 77888888864    578999999   7899999999


Q ss_pred             CCCCeeEEEEEEeehhhhh
Q 017971          336 GNENYLTVSINVLKTRVCF  354 (363)
Q Consensus       336 ~~~~y~~~~~~~~~~~~~~  354 (363)
                      .........|....+.+..
T Consensus        81 ~G~~v~~~~G~~~~~~l~~   99 (103)
T PHA02278         81 DGQLVKKYEDQVTPMQLQE   99 (103)
T ss_pred             CCEEEEEEeCCCCHHHHHh
Confidence            8766666666665555443

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=96.89  E-value=0.012  Score=48.79  Aligned_cols=81  Identities=17%  Similarity=0.304  Sum_probs=60.1

Q ss_pred             CCCcccCCh-hhHHhhhcC-C--CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCC
Q 017971          252 LPLSVPINQ-DTLNLLKDD-K--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK  327 (363)
Q Consensus       252 ~p~~~~lt~-~~~~~l~~~-~--~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~  327 (363)
                      +..+.+++. ..+...... +  .++++.|+ .......+.+...|..+|.+|+++.|+.||++.. .+...|++   ..
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v---~~  135 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIY-EPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDT---DA  135 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEE-CCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCC---CC
Confidence            344555555 555554322 2  35666555 4467777888899999999999999999999976 78888988   67


Q ss_pred             CCeEEEEeCC
Q 017971          328 LPKMVVWDGN  337 (363)
Q Consensus       328 ~P~~vi~~~~  337 (363)
                      +|++++|...
T Consensus       136 vPTlllyk~G  145 (175)
T cd02987         136 LPALLVYKGG  145 (175)
T ss_pred             CCEEEEEECC
Confidence            9999999875

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=96.84  E-value=0.0028  Score=45.05  Aligned_cols=58  Identities=19%  Similarity=0.255  Sum_probs=42.2

Q ss_pred             CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc---hhhhhhCCcCcCCEEEEEeCCEE
Q 017971           61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---SRLASKQEIDAFPTLKIFMHGIP  129 (363)
Q Consensus        61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~Pt~~~~~~g~~  129 (363)
                      +.-++.|+.+||++|++....+++.         ++.+-.+|++++   .++.+..+...+|.+++  +|+.
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~   67 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL   67 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence            4557789999999999988887632         166667888766   34555568899999964  6653

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=96.81  E-value=0.0047  Score=46.01  Aligned_cols=62  Identities=23%  Similarity=0.223  Sum_probs=39.6

Q ss_pred             hHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh-------hhhhCCcCcCCEEEEEeCCE
Q 017971           56 AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR-------LASKQEIDAFPTLKIFMHGI  128 (363)
Q Consensus        56 ~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-------l~~~~~i~~~Pt~~~~~~g~  128 (363)
                      .+++++  ++.|..+||++|++....+.+.       +  +.+..+|.+++++       +.+.-|...+|++  |.+|+
T Consensus         4 ~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~-------~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~   70 (99)
T TIGR02189         4 MVSEKA--VVIFSRSSCCMCHVVKRLLLTL-------G--VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGK   70 (99)
T ss_pred             hhccCC--EEEEECCCCHHHHHHHHHHHHc-------C--CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCE
Confidence            444433  6679999999999888766643       2  4455666665533       2223367899998  45665


Q ss_pred             EE
Q 017971          129 PT  130 (363)
Q Consensus       129 ~~  130 (363)
                      .+
T Consensus        71 ~i   72 (99)
T TIGR02189        71 LV   72 (99)
T ss_pred             EE
Confidence            44

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=96.74  E-value=0.023  Score=48.29  Aligned_cols=86  Identities=17%  Similarity=0.228  Sum_probs=56.4

Q ss_pred             CCCeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      .++.++|.||+ .||..|....+.+.++++++...+  +.+..|+++.                            ..++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i  112 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI  112 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence            45788889995 789999999999999999987654  5565555542                            2346


Q ss_pred             hhhCCcC------cCCEEEEEeC-CEEEe-e----cCCCCHHHHHHHHH
Q 017971          110 ASKQEID------AFPTLKIFMH-GIPTE-Y----YGPRKAELLVRYLK  146 (363)
Q Consensus       110 ~~~~~i~------~~Pt~~~~~~-g~~~~-y----~g~~~~~~i~~~i~  146 (363)
                      ++.||+.      .+|+.+++.. |.... +    ...+..+++++.+.
T Consensus       113 a~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~  161 (199)
T PTZ00253        113 ARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLE  161 (199)
T ss_pred             HHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence            7777774      3677777764 43221 1    22345555555554

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.68  E-value=0.014  Score=40.57  Aligned_cols=66  Identities=23%  Similarity=0.344  Sum_probs=44.4

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh---hhhhCCcCcCCEEEEEeCCEEEeecCCCCHHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR---LASKQEIDAFPTLKIFMHGIPTEYYGPRKAEL  140 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~  140 (363)
                      ++.|..+||++|.+....+.+.         ++.+-.+|.+++..   +.+..+...+|.++  .+|+.+   |  ..++
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i---g--g~~~   66 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI---G--GSDD   66 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE---e--CHHH
Confidence            6789999999999987777642         26667777766543   33335888999984  566543   2  2566


Q ss_pred             HHHHH
Q 017971          141 LVRYL  145 (363)
Q Consensus       141 i~~~i  145 (363)
                      |.+|+
T Consensus        67 l~~~l   71 (72)
T cd03029          67 LEKYF   71 (72)
T ss_pred             HHHHh
Confidence            66654

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=96.65  E-value=0.0038  Score=43.43  Aligned_cols=66  Identities=15%  Similarity=0.230  Sum_probs=45.5

Q ss_pred             EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC---CcCcCCEEEEEeCCEEEeecCCCCHHHH
Q 017971           65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ---EIDAFPTLKIFMHGIPTEYYGPRKAELL  141 (363)
Q Consensus        65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~~g~~~~y~g~~~~~~i  141 (363)
                      ..|..++|++|++....+++.         ++.+-.+|.+++++....+   |..++|.+++  +|.  ..-|...++.|
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~   68 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKL   68 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHH
Confidence            467889999999988877641         2778888988887665554   7788999865  332  23344555555


Q ss_pred             HH
Q 017971          142 VR  143 (363)
Q Consensus       142 ~~  143 (363)
                      .+
T Consensus        69 ~~   70 (72)
T TIGR02194        69 KA   70 (72)
T ss_pred             Hh
Confidence            44

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PHA03050 glutaredoxin; Provisional

Probab=96.63  E-value=0.0068  Score=45.86  Aligned_cols=68  Identities=10%  Similarity=0.071  Sum_probs=42.8

Q ss_pred             HHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---c----hhhhhhCCcCcCCEEEEEe
Q 017971           53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---Y----SRLASKQEIDAFPTLKIFM  125 (363)
Q Consensus        53 f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---~----~~l~~~~~i~~~Pt~~~~~  125 (363)
                      .++.+++++  ++.|..+||++|++....+++..-..      -.+-.+|.++   .    ..+.+.-|-..+|++++  
T Consensus         6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~------~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--   75 (108)
T PHA03050          6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR------GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--   75 (108)
T ss_pred             HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc------CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--
Confidence            445555544  67799999999999988887653110      1344556554   2    23445557789999954  


Q ss_pred             CCEEE
Q 017971          126 HGIPT  130 (363)
Q Consensus       126 ~g~~~  130 (363)
                      +|+.+
T Consensus        76 ~g~~i   80 (108)
T PHA03050         76 GKTSI   80 (108)
T ss_pred             CCEEE
Confidence            55543

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.62  E-value=0.01  Score=42.41  Aligned_cols=77  Identities=26%  Similarity=0.271  Sum_probs=58.1

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC---EEEeecCCCCHHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAEL  140 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g---~~~~y~g~~~~~~  140 (363)
                      ++.|..+.|+-|..+...+.++...     .++.+-.||.++++++..+|+. .+|.+.+=..+   ....-.+..+.+.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~-----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~   75 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAE-----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ   75 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTT-----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhh-----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence            6889999999999999888876532     2389999999999999999995 89997763211   1234567888888


Q ss_pred             HHHHHH
Q 017971          141 LVRYLK  146 (363)
Q Consensus       141 i~~~i~  146 (363)
                      |.+|++
T Consensus        76 L~~~L~   81 (81)
T PF05768_consen   76 LRAWLE   81 (81)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            888874

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=96.59  E-value=0.0036  Score=44.42  Aligned_cols=55  Identities=15%  Similarity=0.359  Sum_probs=38.8

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCcCcCCEEEEEeCCEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTLKIFMHGIP  129 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~~~~~g~~  129 (363)
                      ++.|+.+||++|.+....+++.       +  +.+-.+|.+.+++..++    .+..++|+++  .+|+.
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~-------~--i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~~   59 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK-------G--VTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDVH   59 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc-------C--CCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence            3568899999999998888752       1  56667777777655444    4678899984  35543

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.57  E-value=0.0058  Score=42.75  Aligned_cols=56  Identities=18%  Similarity=0.294  Sum_probs=39.7

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCcC-cCCEEEEEeCCEEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEID-AFPTLKIFMHGIPT  130 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~-~~Pt~~~~~~g~~~  130 (363)
                      ++.|+.++|++|++....+++.         ++.+-.+|.+.+++..++    .+.. ++|+++  .+|+.+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~i   62 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVHI   62 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEEE
Confidence            5678899999999988777652         267777888877555443    4666 899875  455443

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=96.56  E-value=0.018  Score=40.83  Aligned_cols=77  Identities=12%  Similarity=0.112  Sum_probs=57.8

Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhH
Q 017971          277 IVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFF  355 (363)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~  355 (363)
                      +|........+.....+.+++..++. +.+..+|..+.+...+.+|+   ...|++++   +|+ ....|....+.++.+
T Consensus         5 ~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~vPt~~~---~g~-~~~~G~~~~~~l~~~   77 (82)
T TIGR00411         5 LFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGI---MAVPAIVI---NGD-VEFIGAPTKEELVEA   77 (82)
T ss_pred             EEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCC---ccCCEEEE---CCE-EEEecCCCHHHHHHH
Confidence            34455677778888899999888776 99999999988899999998   56899986   444 255566666777766


Q ss_pred             hhhhh
Q 017971          356 MLTLL  360 (363)
Q Consensus       356 ~~~~~  360 (363)
                      +...|
T Consensus        78 l~~~~   82 (82)
T TIGR00411        78 IKKRL   82 (82)
T ss_pred             HHhhC
Confidence            65543

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.55  E-value=0.026  Score=40.21  Aligned_cols=71  Identities=10%  Similarity=0.217  Sum_probs=49.6

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhh---hhCCcCcCCEEEEEeCCEEEeecCCCCHHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA---SKQEIDAFPTLKIFMHGIPTEYYGPRKAEL  140 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~  140 (363)
                      ++.|+.+||++|++....+++       .  ++.|-.+|.+++++..   +..+...+|.+++  ++..   -+....+.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~---~~Gf~~~~   68 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLS---WSGFRPDM   68 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEE---EecCCHHH
Confidence            567889999999998777753       2  2788888998877643   3456788999965  4432   23466777


Q ss_pred             HHHHHHhh
Q 017971          141 LVRYLKKF  148 (363)
Q Consensus       141 i~~~i~~~  148 (363)
                      |.+.+...
T Consensus        69 l~~~~~~~   76 (81)
T PRK10329         69 INRLHPAP   76 (81)
T ss_pred             HHHHHHhh
Confidence            77776554

>PLN02309 5'-adenylylsulfate reductase

Probab=96.53  E-value=0.017  Score=55.11  Aligned_cols=103  Identities=11%  Similarity=0.123  Sum_probs=75.7

Q ss_pred             CCcccCChhhHHhhh---cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEecc-CchhHHh-hcCCCCC
Q 017971          253 PLSVPINQDTLNLLK---DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK-QFADFAD-TFEANKK  325 (363)
Q Consensus       253 p~~~~lt~~~~~~l~---~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~-~~~~~~~-~~gi~~~  325 (363)
                      +.+.+++.++++.+.   ..++++++.|+. .-....+.+...+.++|+++.+  +.|+.+|++ .+..+++ .|++   
T Consensus       345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyA-pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I---  420 (457)
T PLN02309        345 QNVVALSRAGIENLLKLENRKEPWLVVLYA-PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL---  420 (457)
T ss_pred             CCcEECCHHHHHHHHHhhcCCCeEEEEEEC-CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC---
Confidence            467789999998865   355666666654 4677778888899999998765  999999998 6677886 5999   


Q ss_pred             CCCCeEEEEeCCC-CeeEEE-EEEeehhhhhHhhhh
Q 017971          326 SKLPKMVVWDGNE-NYLTVS-INVLKTRVCFFMLTL  359 (363)
Q Consensus       326 ~~~P~~vi~~~~~-~y~~~~-~~~~~~~~~~~~~~~  359 (363)
                      ..+|++++|.+++ +.-... +.-..+-+..|+.++
T Consensus       421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        421 GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            6899999998764 322222 345556677787764

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=96.48  E-value=0.023  Score=43.12  Aligned_cols=65  Identities=12%  Similarity=0.253  Sum_probs=53.2

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE  338 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~  338 (363)
                      ++++++-|. ..-......+-..+.++|+++++ ..|..||.++.+.+.+.+++   ...|+++.+..+.
T Consensus        14 ~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I---~amPtfvffkngk   79 (114)
T cd02986          14 EKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDI---SYIPSTIFFFNGQ   79 (114)
T ss_pred             CCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCc---eeCcEEEEEECCc
Confidence            445555544 45677778888999999999999 99999999999999999999   5679999887553

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=96.47  E-value=0.021  Score=54.56  Aligned_cols=104  Identities=11%  Similarity=0.072  Sum_probs=74.0

Q ss_pred             CCCcccCChhhHHhhhc---CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCch-hHH-hhcCCCC
Q 017971          252 LPLSVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA-DFA-DTFEANK  324 (363)
Q Consensus       252 ~p~~~~lt~~~~~~l~~---~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~-~~~-~~~gi~~  324 (363)
                      .+.+.++|.+|++.+..   .++++++.|+. .-....+.+...+.++|.++++  +.|+.+|++..+ .++ +.+++  
T Consensus       350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyA-pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I--  426 (463)
T TIGR00424       350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYA-PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL--  426 (463)
T ss_pred             CCCeEECCHHHHHHHHhhhcCCCeEEEEEEC-CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC--
Confidence            34688899999998653   55666666664 4677778888999999998865  889999988643 354 67999  


Q ss_pred             CCCCCeEEEEeCCC-CeeEE-EEEEeehhhhhHhhhh
Q 017971          325 KSKLPKMVVWDGNE-NYLTV-SINVLKTRVCFFMLTL  359 (363)
Q Consensus       325 ~~~~P~~vi~~~~~-~y~~~-~~~~~~~~~~~~~~~~  359 (363)
                       ..+|++++|..++ +...+ .+.-..+-+..||.++
T Consensus       427 -~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       427 -GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             -CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence             6899999998874 22222 2344455566676653

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.43  E-value=0.0085  Score=41.76  Aligned_cols=55  Identities=13%  Similarity=0.254  Sum_probs=40.0

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCcCcCCEEEEEeCCEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTLKIFMHGIP  129 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~  129 (363)
                      ++.|+.+||++|++....+++.         ++.+-.+|+.++++    +.+..+-..+|++++  +|+.
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~   61 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKL   61 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence            5678999999999988777752         26777888887765    444456778899853  5543

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=96.42  E-value=0.043  Score=46.24  Aligned_cols=82  Identities=12%  Similarity=0.151  Sum_probs=62.0

Q ss_pred             hcCCCcccCChhhHHh-hhcCC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCC
Q 017971          250 NFLPLSVPINQDTLNL-LKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKS  326 (363)
Q Consensus       250 ~~~p~~~~lt~~~~~~-l~~~~--~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~  326 (363)
                      ..+..+.++|..++.. +....  .++++.|+ .......+.+...|..+|.+|+++.|+.||++.   ....|++   .
T Consensus        79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~---~~~~~~i---~  151 (192)
T cd02988          79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLY-KDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ---CIPNYPD---K  151 (192)
T ss_pred             CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH---hHhhCCC---C
Confidence            3567777888777764 33332  35666565 446777888889999999999999999999975   3577887   6


Q ss_pred             CCCeEEEEeCCC
Q 017971          327 KLPKMVVWDGNE  338 (363)
Q Consensus       327 ~~P~~vi~~~~~  338 (363)
                      .+|++++|....
T Consensus       152 ~lPTlliyk~G~  163 (192)
T cd02988         152 NLPTILVYRNGD  163 (192)
T ss_pred             CCCEEEEEECCE
Confidence            799999998764

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.33  E-value=0.17  Score=49.65  Aligned_cols=114  Identities=11%  Similarity=0.112  Sum_probs=91.3

Q ss_pred             CCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh---cCCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHH
Q 017971          216 DKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN---FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTT  292 (363)
Q Consensus       216 ~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~---~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  292 (363)
                      ...|++.+..++.+....|.|--.-.++..||..-   +-+ -+.++++..+.+..-.+|.-+.+|..............
T Consensus        60 ~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~  138 (515)
T TIGR03140        60 LRKPSFTILRDGADTGIRFAGIPGGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQA  138 (515)
T ss_pred             CCCCeEEEecCCcccceEEEecCCcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHH
Confidence            45699888765444557788876677777776553   444 47788888888887778887777777788888888999


Q ss_pred             HHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          293 LKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       293 l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      +.++|..++++..-++|+..++++++.+++   ...|++++
T Consensus       139 ~~~~a~~~p~i~~~~id~~~~~~~~~~~~v---~~VP~~~i  176 (515)
T TIGR03140       139 LNQMALLNPNISHTMIDGALFQDEVEALGI---QGVPAVFL  176 (515)
T ss_pred             HHHHHHhCCCceEEEEEchhCHHHHHhcCC---cccCEEEE
Confidence            999999999999999999999999999998   68899987

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.33  E-value=0.18  Score=49.65  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=91.5

Q ss_pred             CCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh---cCCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHH
Q 017971          217 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN---FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL  293 (363)
Q Consensus       217 ~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~---~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l  293 (363)
                      ..|++.+.+++......|.|--.-.++..||..-   +-+ -+.+++...+.+..-.+|+-+.+|.........+....+
T Consensus        60 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~  138 (517)
T PRK15317         60 RKPSFSITRPGEDTGVRFAGIPMGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQAL  138 (517)
T ss_pred             CCCEEEEEcCCccceEEEEecCccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHH
Confidence            4699888765444457888877777888887654   333 466788888888877788888878777888888899999


Q ss_pred             HHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          294 KAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       294 ~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      .++|..++++.+-++|+..++++++.+++   ...|++++
T Consensus       139 ~~~a~~~~~i~~~~id~~~~~~~~~~~~v---~~VP~~~i  175 (517)
T PRK15317        139 NLMAVLNPNITHTMIDGALFQDEVEARNI---MAVPTVFL  175 (517)
T ss_pred             HHHHHhCCCceEEEEEchhCHhHHHhcCC---cccCEEEE
Confidence            99999988999999999999999999998   68899976

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=96.30  E-value=0.016  Score=42.95  Aligned_cols=67  Identities=16%  Similarity=0.217  Sum_probs=42.7

Q ss_pred             hhHHHhHcCCCeEEEEEE----CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhh----hhCCcCcCCEEE
Q 017971           51 SNFDSAISSFDYILVDFY----APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA----SKQEIDAFPTLK  122 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy----~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~Pt~~  122 (363)
                      +..++++++++. +|.-.    .|||++|++....+.+.       +  +.+..+|..+++++.    +.-|-..+|+++
T Consensus         3 ~~v~~~i~~~~V-vvf~kg~~~~~~Cp~C~~ak~lL~~~-------~--i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf   72 (97)
T TIGR00365         3 ERIKEQIKENPV-VLYMKGTPQFPQCGFSARAVQILKAC-------G--VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY   72 (97)
T ss_pred             HHHHHHhccCCE-EEEEccCCCCCCCchHHHHHHHHHHc-------C--CCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence            345566666544 33332    38999999888777653       1  567778887766544    334667889985


Q ss_pred             EEeCCEE
Q 017971          123 IFMHGIP  129 (363)
Q Consensus       123 ~~~~g~~  129 (363)
                        .+|+.
T Consensus        73 --i~g~~   77 (97)
T TIGR00365        73 --VKGEF   77 (97)
T ss_pred             --ECCEE
Confidence              35543

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=96.27  E-value=0.015  Score=44.12  Aligned_cols=95  Identities=16%  Similarity=0.201  Sum_probs=62.2

Q ss_pred             ceecCChHHHHHHHHhcCCcccEEEeec------CChhHHHHHHHH-hhhhhHHHHh--------hhcchhhhhhcCCC-
Q 017971          153 VSILNSDAEVSDFVENAGTFFPLFIGFG------LDESVMSNLALK-YKKKAWFAVA--------KDFSEDTMVLYDFD-  216 (363)
Q Consensus       153 v~~i~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~a~~-~~~~~~~~~~--------~~~~~~~~~~~~~~-  216 (363)
                      ...+.+. .+++.+...+   .++|-|.      +..+.+..+|.+ ........++        ...+.++.++|++. 
T Consensus         6 ~v~LD~~-tFdKvi~kf~---~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    6 CVPLDEL-TFDKVIPKFK---YVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             SEEESTT-HHHHHGGGSS---EEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             eeeccce-ehhheeccCc---eEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            4556554 5999998886   3555553      234568888833 3221111111        13468899999995 


Q ss_pred             -CCCeEEEEcCCCCCcccc--cCCCCHHHHHHHHHhhc
Q 017971          217 -KVPALVALQPSYNEHNIF--YGPFDEEFLEEFIKQNF  251 (363)
Q Consensus       217 -~~p~iv~~~~~~~~~~~~--~g~~~~~~l~~fi~~~~  251 (363)
                       .+|.+.+|..+.+++..|  .|+++.+.|..|+++++
T Consensus        82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t  119 (126)
T PF07912_consen   82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT  119 (126)
T ss_dssp             CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred             ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence             469999999877888888  78999999999999985

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=96.25  E-value=0.074  Score=42.24  Aligned_cols=88  Identities=16%  Similarity=0.151  Sum_probs=61.3

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCC-CeeEEEE--
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVSI--  345 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~-~y~~~~~--  345 (363)
                      .+++++-|+ ..-......+...|.++|+++++ ..|..||.++.+.+.+.+++ . +..|.+.+++... +-...+|  
T Consensus        23 ~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I-~-~~~t~~~ffk~g~~~vd~~tG~~   99 (142)
T PLN00410         23 ERLVVIRFG-HDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYEL-Y-DPCTVMFFFRNKHIMIDLGTGNN   99 (142)
T ss_pred             CCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCc-c-CCCcEEEEEECCeEEEEEecccc
Confidence            345555554 45677778888999999999999 77899999999999999999 2 3434554777654 4444445  


Q ss_pred             ------EEeehhhhhHhhhhh
Q 017971          346 ------NVLKTRVCFFMLTLL  360 (363)
Q Consensus       346 ------~~~~~~~~~~~~~~~  360 (363)
                            ...++.++.-+..++
T Consensus       100 ~k~~~~~~~k~~l~~~i~~~~  120 (142)
T PLN00410        100 NKINWALKDKQEFIDIVETVY  120 (142)
T ss_pred             cccccccCCHHHHHHHHHHHH
Confidence                  345555555555444

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.20  E-value=0.019  Score=41.91  Aligned_cols=59  Identities=19%  Similarity=0.281  Sum_probs=41.9

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC--ccc------------------------------hhhhh
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA--DKY------------------------------SRLAS  111 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~--~~~------------------------------~~l~~  111 (363)
                      ++.|+++.|++|..+.+.+.++.....   .++.+.....  ...                              ....+
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADD---GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR   77 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcC---CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            467999999999999999999874332   2355554443  221                              23566


Q ss_pred             hCCcCcCCEEEEEe
Q 017971          112 KQEIDAFPTLKIFM  125 (363)
Q Consensus       112 ~~~i~~~Pt~~~~~  125 (363)
                      +.|+.++|++++..
T Consensus        78 ~~g~~g~Pt~v~~~   91 (98)
T cd02972          78 ALGVTGTPTFVVNG   91 (98)
T ss_pred             HcCCCCCCEEEECC
Confidence            78999999998754

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=0.036  Score=41.72  Aligned_cols=65  Identities=17%  Similarity=0.374  Sum_probs=53.4

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE  338 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~  338 (363)
                      ++++++-|+ ..-....+.+...+.++|.+|+++.|..+|.++...+++.+++   ...|++++++...
T Consensus        21 ~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V---~~~PTf~f~k~g~   85 (106)
T KOG0907|consen   21 DKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNV---KAMPTFVFYKGGE   85 (106)
T ss_pred             CCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCc---eEeeEEEEEECCE
Confidence            355555554 4456667888999999999999999999999988889999999   6789999997763

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=96.13  E-value=0.06  Score=41.76  Aligned_cols=100  Identities=12%  Similarity=0.033  Sum_probs=68.7

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCc-----------hhHHhhcCCC
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF-----------ADFADTFEAN  323 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~-----------~~~~~~~gi~  323 (363)
                      +.++|...+.....+++..++.| ........+.+...|++++++. +..+.++|.+..           ..+.+.+++.
T Consensus         8 ~~~it~~~~~~~i~~~~~~iv~f-~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~   85 (122)
T TIGR01295         8 LEVTTVVRALEALDKKETATFFI-GRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP   85 (122)
T ss_pred             ceecCHHHHHHHHHcCCcEEEEE-ECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence            45567677776666666655554 4568888899999999999883 366777777632           3566777762


Q ss_pred             -CCCCCCeEEEEeCCCCeeEEEE-EEeehhhhhHh
Q 017971          324 -KKSKLPKMVVWDGNENYLTVSI-NVLKTRVCFFM  356 (363)
Q Consensus       324 -~~~~~P~~vi~~~~~~y~~~~~-~~~~~~~~~~~  356 (363)
                       .-...|++++++....-....| ..+..++..|.
T Consensus        86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        86 TSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             ccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence             1245899999998865555555 44577777664

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=96.02  E-value=0.0022  Score=56.48  Aligned_cols=94  Identities=23%  Similarity=0.460  Sum_probs=75.4

Q ss_pred             HHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-CccchhhhhhCCcCcCCEEEEEeCCEE
Q 017971           53 FDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-ADKYSRLASKQEIDAFPTLKIFMHGIP  129 (363)
Q Consensus        53 f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-~~~~~~l~~~~~i~~~Pt~~~~~~g~~  129 (363)
                      ...++  ++..++-+.||+.||+..+..+|+++-....+..    +....++ -..-+++..++++.+.|++.+....-+
T Consensus        67 l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~  142 (319)
T KOG2640|consen   67 LLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCP  142 (319)
T ss_pred             HHHhhccccCCcccccchhcccCcccccCcccchhhhhccc----cccccHHHHhhcccchhccccccCCcceeeccccc
Confidence            34444  4478999999999999999999999988776652    3333333 234477889999999999999888888


Q ss_pred             EeecCCCCHHHHHHHHHhhcC
Q 017971          130 TEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       130 ~~y~g~~~~~~i~~~i~~~~~  150 (363)
                      ..|.|.+...+|++|-.+.++
T Consensus       143 ~~~~~~r~l~sLv~fy~~i~~  163 (319)
T KOG2640|consen  143 ASYRGERDLASLVNFYTEITP  163 (319)
T ss_pred             hhhcccccHHHHHHHHHhhcc
Confidence            899999999999999998886

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=95.84  E-value=0.1  Score=43.17  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=74.6

Q ss_pred             CCCeEEcChhhHHHhH---cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           42 DGKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l---~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      -+.|..++..+|.+-+   .++-.++|..|...-+.|.-+...++.+|..+.+    ++|.++=.+..   ...|--...
T Consensus        90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~c---IpNYPe~nl  162 (240)
T KOG3170|consen   90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATTC---IPNYPESNL  162 (240)
T ss_pred             ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecccccc---cCCCcccCC
Confidence            3679999999998866   3334667889999999999999999999987764    77777654332   233556788


Q ss_pred             CEEEEEeCCEEE-------eecCCCC-HHHHHHHHHhhcCCCceecC
Q 017971          119 PTLKIFMHGIPT-------EYYGPRK-AELLVRYLKKFVAPDVSILN  157 (363)
Q Consensus       119 Pt~~~~~~g~~~-------~y~g~~~-~~~i~~~i~~~~~~~v~~i~  157 (363)
                      ||+++|..|...       .+.|... .+++. |..-..++.+....
T Consensus       163 PTl~VY~~G~lk~q~igll~lgG~n~t~ed~e-~~L~qaga~l~d~~  208 (240)
T KOG3170|consen  163 PTLLVYHHGALKKQMIGLLELGGMNLTMEDVE-DFLVQAGAALTDGD  208 (240)
T ss_pred             CeEEEeecchHHhheehhhhhcCCcCCHHHHH-HHHHhccccccccc
Confidence            999999988432       2455543 44444 44444454555443

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.74  E-value=0.21  Score=37.72  Aligned_cols=90  Identities=12%  Similarity=0.057  Sum_probs=63.1

Q ss_pred             ChhhHHHhHcCC-CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971           49 DESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG  127 (363)
Q Consensus        49 ~~~~f~~~l~~~-~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  127 (363)
                      +.+++++++... +..+|-|+...-+   .....|.++|..+...   +.|+...   +..+.+++++. .|.+++|++.
T Consensus         7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd---~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~   76 (107)
T cd03068           7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRED---YKFHHTF---DSEIFKSLKVS-PGQLVVFQPE   76 (107)
T ss_pred             CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccC---CEEEEEC---hHHHHHhcCCC-CCceEEECcH
Confidence            456688887666 7888888776543   5677889999887543   7887655   45677788775 5778888433


Q ss_pred             --------EEEeecCC-CCHHH-HHHHHHhh
Q 017971          128 --------IPTEYYGP-RKAEL-LVRYLKKF  148 (363)
Q Consensus       128 --------~~~~y~g~-~~~~~-i~~~i~~~  148 (363)
                              ....|.|. .+.+. |.+|++.+
T Consensus        77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             HHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence                    33468887 56655 99998753

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=95.73  E-value=0.078  Score=38.56  Aligned_cols=63  Identities=13%  Similarity=0.095  Sum_probs=53.4

Q ss_pred             cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          268 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       268 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      .-.+|+-+.+|..............+.+++..++++.+..+|.++++...+.+|+   ...|++++
T Consensus         9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V---~~vPt~vi   71 (89)
T cd03026           9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGI---MSVPAIFL   71 (89)
T ss_pred             hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCC---ccCCEEEE
Confidence            3456777777777777777888899999999998899999999999999999999   57899976

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=95.68  E-value=0.016  Score=48.13  Aligned_cols=158  Identities=15%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             EEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhh---hhhCCcCcC-----CEEEEEeCC---EEEeecC
Q 017971           66 DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL---ASKQEIDAF-----PTLKIFMHG---IPTEYYG  134 (363)
Q Consensus        66 ~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l---~~~~~i~~~-----Pt~~~~~~g---~~~~y~g  134 (363)
                      +|+.|.|+.|-.+.|.|.++...+.+.   +.+-.+=...-+.+   ....++++-     |.-..|.-.   +.....|
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg   78 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQG   78 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhC
Confidence            589999999999999999999988654   55544433222211   111111000     000000000   0011235


Q ss_pred             CCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCChhHHHHHHHHhhhh-hHHHHhhhcchhhhhhc
Q 017971          135 PRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKK-AWFAVAKDFSEDTMVLY  213 (363)
Q Consensus       135 ~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~  213 (363)
                      ...+..+..-+++.+.-.-..+++.+-+.+..++-...          .+   .....+... ..-.+  ..+..++...
T Consensus        79 ~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD----------~~---~F~~d~~S~~~~~~~--~~D~~la~~m  143 (176)
T PF13743_consen   79 KKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLD----------VE---MFKEDLHSDEAKQAF--QEDQQLAREM  143 (176)
T ss_dssp             -H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT------------HH---HHHHHHTSHHHHHHH--HHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCC----------HH---HHHHHHhChHHHHHH--HHHHHHHHHc
Confidence            44455555555555544444444433343444332211          11   111111111 11111  2346678899


Q ss_pred             CCCCCCeEEEEcCC-CCCcccccCCCCHH
Q 017971          214 DFDKVPALVALQPS-YNEHNIFYGPFDEE  241 (363)
Q Consensus       214 ~~~~~p~iv~~~~~-~~~~~~~~g~~~~~  241 (363)
                      ++++.|+++++... .+......|..+.+
T Consensus       144 ~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~  172 (176)
T PF13743_consen  144 GITGFPTLVIFNENNEEYGILIEGYYSYE  172 (176)
T ss_dssp             T-SSSSEEEEE------------------
T ss_pred             CCCCCCEEEEEeccccccccccccccccc
Confidence            99999999999843 23344455544433

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=95.67  E-value=0.055  Score=44.53  Aligned_cols=92  Identities=12%  Similarity=0.091  Sum_probs=67.9

Q ss_pred             HHHHHHHHhhcCCCcccCC-hhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhh
Q 017971          241 EFLEEFIKQNFLPLSVPIN-QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADT  319 (363)
Q Consensus       241 ~~l~~fi~~~~~p~~~~lt-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~  319 (363)
                      +.-..|+.+ +..-+.++. +..+-..+.....++|-|+.+ +....+-.-+-|..+|+.|-+.+|..||+...|-++..
T Consensus        55 ~kr~~~~~~-GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~-~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~k  132 (211)
T KOG1672|consen   55 EKRKEWLSK-GHGEYEEVASEKDFFEEVKKSEKVVCHFYRP-EFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTK  132 (211)
T ss_pred             HHHHHHHHc-CCceEEEeccHHHHHHHhhcCceEEEEEEcC-CCcceehHHHHHHHHHHhcccceEEEEecccCceeeee
Confidence            344456555 566677776 445555665667788888755 33344445567888899999999999999999999999


Q ss_pred             cCCCCCCCCCeEEEEeCC
Q 017971          320 FEANKKSKLPKMVVWDGN  337 (363)
Q Consensus       320 ~gi~~~~~~P~~vi~~~~  337 (363)
                      ++|   .-+|+++++...
T Consensus       133 L~I---kVLP~v~l~k~g  147 (211)
T KOG1672|consen  133 LNI---KVLPTVALFKNG  147 (211)
T ss_pred             eee---eEeeeEEEEEcC
Confidence            999   678999998876

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=95.65  E-value=0.11  Score=38.02  Aligned_cols=94  Identities=11%  Similarity=0.170  Sum_probs=67.3

Q ss_pred             hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC--chhHHhhcCCCCCCCCCeEEEEe--
Q 017971          261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWD--  335 (363)
Q Consensus       261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P~~vi~~--  335 (363)
                      -.+..+.+....+++++..  +...-....+.+.++|..-+| =..+||||.+  -.++|+.+-+ +.+.-|.-..+.  
T Consensus        10 KdfKKLLRTr~NVLvLy~k--s~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv-~~~~kp~~~~LkHY   86 (112)
T cd03067          10 KDFKKLLRTRNNVLVLYSK--SAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKV-DPSSKPKPVELKHY   86 (112)
T ss_pred             HHHHHHHhhcCcEEEEEec--chhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHcc-CCCCCCCcchhhcc
Confidence            4566777777788887764  344445667899999999998 7789999987  5779999998 333334434333  


Q ss_pred             CCCC-eeEEEEEEeehhhhhHhh
Q 017971          336 GNEN-YLTVSINVLKTRVCFFML  357 (363)
Q Consensus       336 ~~~~-y~~~~~~~~~~~~~~~~~  357 (363)
                      .+|. ....+..++..-+..||.
T Consensus        87 KdG~fHkdYdR~~t~kSmv~Flr  109 (112)
T cd03067          87 KDGDFHTEYNRQLTFKSMVAFLR  109 (112)
T ss_pred             cCCCccccccchhhHHHHHHHhh
Confidence            4564 567788888888888874

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=95.62  E-value=0.1  Score=40.22  Aligned_cols=67  Identities=18%  Similarity=0.289  Sum_probs=50.7

Q ss_pred             CCcEEEEEEeC------CChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC-------chhHHhhcCCCCCCCCCeEEEEe
Q 017971          270 KRKIVLAIVED------ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ-------FADFADTFEANKKSKLPKMVVWD  335 (363)
Q Consensus       270 ~~~~~i~~~~~------~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~-------~~~~~~~~gi~~~~~~P~~vi~~  335 (363)
                      ++++++.|+.+      .=....+.....+++++.++++ +.|+.||..+       ...+...+++ . ...|++++++
T Consensus        21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~-~~iPT~~~~~   98 (119)
T cd02952          21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-T-TGVPTLLRWK   98 (119)
T ss_pred             CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-c-cCCCEEEEEc
Confidence            56788877753      2344457778899999999985 9999999865       3478888888 3 4899999996


Q ss_pred             CCC
Q 017971          336 GNE  338 (363)
Q Consensus       336 ~~~  338 (363)
                      ..+
T Consensus        99 ~~~  101 (119)
T cd02952          99 TPQ  101 (119)
T ss_pred             CCc
Confidence            543

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=95.58  E-value=0.045  Score=39.91  Aligned_cols=64  Identities=16%  Similarity=0.284  Sum_probs=40.3

Q ss_pred             HhHcCCCeEEEEEEC----CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh----hCCcCcCCEEEEEeC
Q 017971           55 SAISSFDYILVDFYA----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEIDAFPTLKIFMH  126 (363)
Q Consensus        55 ~~l~~~~~~lv~fy~----~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~----~~~i~~~Pt~~~~~~  126 (363)
                      +.++++ +++|.-.+    |||++|++....+.+.       +  +.+..+|..+++++.+    .-|-..+|+++  .+
T Consensus         3 ~~i~~~-~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~--i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~   70 (90)
T cd03028           3 KLIKEN-PVVLFMKGTPEEPRCGFSRKVVQILNQL-------G--VDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VN   70 (90)
T ss_pred             hhhccC-CEEEEEcCCCCCCCCcHHHHHHHHHHHc-------C--CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--EC
Confidence            455554 44443332    7999999887777653       1  6677778777665433    34677899984  46


Q ss_pred             CEEE
Q 017971          127 GIPT  130 (363)
Q Consensus       127 g~~~  130 (363)
                      |+.+
T Consensus        71 g~~i   74 (90)
T cd03028          71 GELV   74 (90)
T ss_pred             CEEE
Confidence            6543

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=95.47  E-value=0.12  Score=40.10  Aligned_cols=95  Identities=14%  Similarity=0.169  Sum_probs=63.0

Q ss_pred             HHhhhcCC-CcEEEEEEeCCChhhHHHHHHHHH---HHHHhCCC-cEEEEEeccCc-------------hhHHhhcCCCC
Q 017971          263 LNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLK---AAASANRE-LVFCYVGIKQF-------------ADFADTFEANK  324 (363)
Q Consensus       263 ~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~l~---~~a~~~~~-~~f~~vd~~~~-------------~~~~~~~gi~~  324 (363)
                      +......+ +++++.|.. ......+.+...+.   .+...+.+ +.+..+|.+..             ..+.+.+++  
T Consensus         6 ~~~a~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v--   82 (125)
T cd02951           6 LAEAAADGKKPLLLLFSQ-PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV--   82 (125)
T ss_pred             HHHHHHcCCCcEEEEEeC-CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC--
Confidence            34444555 778777764 45666666665542   34444433 77888887643             568888998  


Q ss_pred             CCCCCeEEEEeCC-CC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          325 KSKLPKMVVWDGN-EN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       325 ~~~~P~~vi~~~~-~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                       ...|++++++++ |+ .....|....+.+..++..+++
T Consensus        83 -~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          83 -RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             -ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence             578999999998 54 4556666666777777666553

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.42  E-value=0.039  Score=39.22  Aligned_cols=51  Identities=22%  Similarity=0.383  Sum_probs=36.3

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-----hhhhhC-CcCcCCEEEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----RLASKQ-EIDAFPTLKI  123 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~Pt~~~  123 (363)
                      ++.|..++|++|++....+.+       .+  +.+-.+|.++++     +..++- |.+.+|.+++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~-------~g--~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR-------KG--VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH-------cC--CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            567888999999988777762       22  666766766554     334444 7899999886

>PRK10638 glutaredoxin 3; Provisional

Probab=95.33  E-value=0.04  Score=39.41  Aligned_cols=56  Identities=13%  Similarity=0.224  Sum_probs=38.8

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhh----hhhCCcCcCCEEEEEeCCEEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL----ASKQEIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~g~~~  130 (363)
                      ++.|..+||++|++....+++.       +  +.+..+|++++++.    .+..+...+|++++  +|+.+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~-------g--i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i   63 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK-------G--VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI   63 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------C--CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            5677889999999988777752       1  56677888766543    34456778998843  56544

>PTZ00062 glutaredoxin; Provisional

Probab=95.31  E-value=0.16  Score=43.17  Aligned_cols=74  Identities=11%  Similarity=0.119  Sum_probs=54.4

Q ss_pred             hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCe
Q 017971          261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY  340 (363)
Q Consensus       261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y  340 (363)
                      +.+..+..++...+++++...-.+..+.+...|..++++++++.|..||.+        +++   ...|++++++.....
T Consensus         7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V---~~vPtfv~~~~g~~i   75 (204)
T PTZ00062          7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DAN---NEYGVFEFYQNSQLI   75 (204)
T ss_pred             HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCc---ccceEEEEEECCEEE
Confidence            444444444334455566555677888899999999999999999999987        777   678999999876554


Q ss_pred             eEEEE
Q 017971          341 LTVSI  345 (363)
Q Consensus       341 ~~~~~  345 (363)
                      ...++
T Consensus        76 ~r~~G   80 (204)
T PTZ00062         76 NSLEG   80 (204)
T ss_pred             eeeeC
Confidence            44444

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=95.07  E-value=0.13  Score=34.83  Aligned_cols=54  Identities=19%  Similarity=0.297  Sum_probs=43.1

Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          277 IVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      +|........+.....+++++..++++.|..+|.++.+++.+.+|+   ...|++++
T Consensus         5 ~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i---~~vPti~i   58 (67)
T cd02973           5 VFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGV---MSVPAIVI   58 (67)
T ss_pred             EEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCC---cccCEEEE
Confidence            3444456666778888888888777799999999988889999998   56899876

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PRK10824 glutaredoxin-4; Provisional

Probab=94.55  E-value=0.094  Score=40.02  Aligned_cols=68  Identities=19%  Similarity=0.296  Sum_probs=41.2

Q ss_pred             hhHHHhHcCCCeEEEEEEC----CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCcCcCCEEE
Q 017971           51 SNFDSAISSFDYILVDFYA----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTLK  122 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~----~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~  122 (363)
                      +-.++.+++++.++. --.    |||++|++....+.+..         +.+..+|..+++++...    -|-+.+|+++
T Consensus         6 ~~v~~~I~~~~Vvvf-~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF   75 (115)
T PRK10824          6 EKIQRQIAENPILLY-MKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQNPDIRAELPKYANWPTFPQLW   75 (115)
T ss_pred             HHHHHHHhcCCEEEE-ECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence            345666766544433 332    69999999888776642         34445666666554443    3567888876


Q ss_pred             EEeCCEEE
Q 017971          123 IFMHGIPT  130 (363)
Q Consensus       123 ~~~~g~~~  130 (363)
                      +  +|+.+
T Consensus        76 I--~G~~I   81 (115)
T PRK10824         76 V--DGELV   81 (115)
T ss_pred             E--CCEEE
Confidence            5  55443

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=94.49  E-value=0.22  Score=41.69  Aligned_cols=102  Identities=22%  Similarity=0.285  Sum_probs=75.4

Q ss_pred             CCCeEEcCh-hhHHHhHcCC---CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           42 DGKVIELDE-SNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        42 ~~~v~~l~~-~~f~~~l~~~---~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      -..|.++++ +.|-..|++.   -.++|..|-+.-.-|..+-..+.-+|.++.    .+.|.++-.+ +.....+|..++
T Consensus       137 ~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP----~vKFckikss-~~gas~~F~~n~  211 (273)
T KOG3171|consen  137 YGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP----IVKFCKIKSS-NTGASDRFSLNV  211 (273)
T ss_pred             cceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC----ceeEEEeeec-cccchhhhcccC
Confidence            457888855 6688888544   367888999999999999988888886653    4889888754 355678999999


Q ss_pred             CCEEEEEeCCEEEe-e-------cCCCCHHHHHHHHHhh
Q 017971          118 FPTLKIFMHGIPTE-Y-------YGPRKAELLVRYLKKF  148 (363)
Q Consensus       118 ~Pt~~~~~~g~~~~-y-------~g~~~~~~i~~~i~~~  148 (363)
                      .|++.+|++|+.+. |       -...-+..+..|++.+
T Consensus       212 lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~  250 (273)
T KOG3171|consen  212 LPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY  250 (273)
T ss_pred             CceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence            99999999998653 1       1234455566666555

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=93.98  E-value=0.56  Score=36.40  Aligned_cols=77  Identities=14%  Similarity=0.146  Sum_probs=51.0

Q ss_pred             ChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHH-HHH--HHHHh-CCCcEEEEEeccCchhHHhh--------cCCCCCC
Q 017971          259 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVT-TLK--AAASA-NRELVFCYVGIKQFADFADT--------FEANKKS  326 (363)
Q Consensus       259 t~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~l~--~~a~~-~~~~~f~~vd~~~~~~~~~~--------~gi~~~~  326 (363)
                      +.+.+......++|+++.|. .+-....+.+.+ .+.  +++.. .+++.++.+|.++.+...+.        +|.   .
T Consensus         4 ~~eal~~Ak~~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~---~   79 (124)
T cd02955           4 GEEAFEKARREDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ---G   79 (124)
T ss_pred             CHHHHHHHHHcCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC---C
Confidence            45566777788888887765 345555555543 222  34444 35688889999876554332        355   5


Q ss_pred             CCCeEEEEeCCCC
Q 017971          327 KLPKMVVWDGNEN  339 (363)
Q Consensus       327 ~~P~~vi~~~~~~  339 (363)
                      +.|++++++++|+
T Consensus        80 G~Pt~vfl~~~G~   92 (124)
T cd02955          80 GWPLNVFLTPDLK   92 (124)
T ss_pred             CCCEEEEECCCCC
Confidence            7899999999985

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=93.92  E-value=0.44  Score=36.55  Aligned_cols=77  Identities=14%  Similarity=0.226  Sum_probs=48.1

Q ss_pred             hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCch-hHHhhcCCCCCCCCCeEEEEeCCC
Q 017971          261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFA-DFADTFEANKKSKLPKMVVWDGNE  338 (363)
Q Consensus       261 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~-~~~~~~gi~~~~~~P~~vi~~~~~  338 (363)
                      +.+......++|+++.|.. .-....+.+...+.+.+..... ..|+.+|.+..+ .....+++ .....|++++++++|
T Consensus        10 ~al~~A~~~~kpVlV~F~a-~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~-~g~~vPt~~f~~~~G   87 (117)
T cd02959          10 DGIKEAKDSGKPLMLLIHK-TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSP-DGGYIPRILFLDPSG   87 (117)
T ss_pred             HHHHHHHHcCCcEEEEEeC-CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhccc-CCCccceEEEECCCC
Confidence            3444555667788777764 4566666777667665543322 456666665443 34466777 233489999999887


Q ss_pred             C
Q 017971          339 N  339 (363)
Q Consensus       339 ~  339 (363)
                      +
T Consensus        88 k   88 (117)
T cd02959          88 D   88 (117)
T ss_pred             C
Confidence            4

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=93.78  E-value=0.46  Score=35.36  Aligned_cols=67  Identities=12%  Similarity=0.159  Sum_probs=46.0

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCcEEEEEeccCc-----------------------hhHHhhcCCCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASAN--RELVFCYVGIKQF-----------------------ADFADTFEANK  324 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~--~~~~f~~vd~~~~-----------------------~~~~~~~gi~~  324 (363)
                      ++++++.|+.. ...........+.++..++  +++.++.++.+..                       ..+.+.||+  
T Consensus        19 ~k~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   95 (116)
T cd02966          19 GKVVLVNFWAS-WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV--   95 (116)
T ss_pred             CCEEEEEeecc-cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc--
Confidence            45566665543 4455566677777777777  3477777766553                       567788888  


Q ss_pred             CCCCCeEEEEeCCCCe
Q 017971          325 KSKLPKMVVWDGNENY  340 (363)
Q Consensus       325 ~~~~P~~vi~~~~~~y  340 (363)
                       ...|.+++++++|+.
T Consensus        96 -~~~P~~~l~d~~g~v  110 (116)
T cd02966          96 -RGLPTTFLIDRDGRI  110 (116)
T ss_pred             -CccceEEEECCCCcE
Confidence             478999999999853

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=93.71  E-value=0.89  Score=39.17  Aligned_cols=56  Identities=9%  Similarity=0.044  Sum_probs=47.0

Q ss_pred             cccCCCCCeEEcChhh---HHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcC
Q 017971           37 TKFKIDGKVIELDESN---FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL   92 (363)
Q Consensus        37 ~~~~~~~~v~~l~~~~---f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~   92 (363)
                      +...+++.|+.+++.+   +-+..+.++|.++.|-+--|++=..-.+.|+++++++.+.
T Consensus        76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~  134 (237)
T PF00837_consen   76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV  134 (237)
T ss_pred             CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh
Confidence            4567789999999887   3444578899999999999999999999999999988754

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=93.68  E-value=0.11  Score=42.87  Aligned_cols=41  Identities=27%  Similarity=0.442  Sum_probs=32.8

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD  102 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd  102 (363)
                      +.++.++.|+...|++|+.+++.+.++.+++.+   ++.+..+.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~---~v~~~~~~   54 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK---DVKFEKVP   54 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC---CceEEEcC
Confidence            568899999999999999999999998877633   35555444

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=93.23  E-value=0.95  Score=32.87  Aligned_cols=24  Identities=13%  Similarity=0.397  Sum_probs=18.0

Q ss_pred             chhHHhhcCCCCCCCCCeEEEEeCCCC
Q 017971          313 FADFADTFEANKKSKLPKMVVWDGNEN  339 (363)
Q Consensus       313 ~~~~~~~~gi~~~~~~P~~vi~~~~~~  339 (363)
                      ...+.+.+++   ...|++++++++|+
T Consensus        71 ~~~l~~~~~i---~~iP~~~lld~~G~   94 (95)
T PF13905_consen   71 NSELLKKYGI---NGIPTLVLLDPDGK   94 (95)
T ss_dssp             HHHHHHHTT----TSSSEEEEEETTSB
T ss_pred             HHHHHHHCCC---CcCCEEEEECCCCC
Confidence            3456677777   56899999999986

...

>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=92.88  E-value=0.19  Score=36.45  Aligned_cols=78  Identities=13%  Similarity=0.173  Sum_probs=48.5

Q ss_pred             eecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCC-
Q 017971          154 SILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS-  227 (363)
Q Consensus       154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~-  227 (363)
                      .++.+.++++. +..+.   ..+|+|+.+.     ..++.+|..+++.+.|.+...  +.. ......+ +..++|++. 
T Consensus         2 kef~~~~eL~~-id~~k---r~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G--~~~-~~~~~~~-~~~i~frp~~   73 (91)
T cd03070           2 KEFRNLDELNN-VDRSK---RNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFG--DVT-KPERPPG-DNIIYFPPGH   73 (91)
T ss_pred             ceecCHHHHHh-hCcCC---ceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEec--ccc-ccccCCC-CCeEEECCCC
Confidence            45666555544 33322   5889988432     469999999999988876532  211 1222233 456788876 


Q ss_pred             CCCcccccCCCC
Q 017971          228 YNEHNIFYGPFD  239 (363)
Q Consensus       228 ~~~~~~~~g~~~  239 (363)
                      ......|.|.++
T Consensus        74 ~~~~~~y~G~~t   85 (91)
T cd03070          74 NAPDMVYLGSLT   85 (91)
T ss_pred             CCCceEEccCCC
Confidence            455578989873

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=92.87  E-value=0.48  Score=35.70  Aligned_cols=82  Identities=16%  Similarity=0.226  Sum_probs=51.2

Q ss_pred             cCCCcEEEEEEeCCChhhHHHHHHHHHH---HHHhCCC-cEEEEEeccCc--------------------hhHHhhcCCC
Q 017971          268 DDKRKIVLAIVEDETEEKSQKLVTTLKA---AASANRE-LVFCYVGIKQF--------------------ADFADTFEAN  323 (363)
Q Consensus       268 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~---~a~~~~~-~~f~~vd~~~~--------------------~~~~~~~gi~  323 (363)
                      .++++.+++|. +....-.+.+.+.+..   +....++ +.+..++..+.                    +++.+.+|+ 
T Consensus         3 ~~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-   80 (112)
T PF13098_consen    3 GNGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV-   80 (112)
T ss_dssp             TTSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred             CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC-
Confidence            34567777665 5577777777777664   4444443 66777766542                    348888998 


Q ss_pred             CCCCCCeEEEEeCCCC-eeEEEEEEeehhhh
Q 017971          324 KKSKLPKMVVWDGNEN-YLTVSINVLKTRVC  353 (363)
Q Consensus       324 ~~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~  353 (363)
                        ...|++++++++|+ .+...|-+..+++.
T Consensus        81 --~gtPt~~~~d~~G~~v~~~~G~~~~~~l~  109 (112)
T PF13098_consen   81 --NGTPTIVFLDKDGKIVYRIPGYLSPEELL  109 (112)
T ss_dssp             ---SSSEEEECTTTSCEEEEEESS--HHHHH
T ss_pred             --CccCEEEEEcCCCCEEEEecCCCCHHHHH
Confidence              67899999998876 55666666555543

...

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=92.85  E-value=0.5  Score=41.92  Aligned_cols=82  Identities=12%  Similarity=0.237  Sum_probs=50.2

Q ss_pred             CCCcccCCh-hhHHh-hhcCC-CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCC
Q 017971          252 LPLSVPINQ-DTLNL-LKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL  328 (363)
Q Consensus       252 ~p~~~~lt~-~~~~~-l~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~  328 (363)
                      +..+.+++. +.+-. +...+ ...+|+.+..........+-..|..+|.+|+.++|+.|.+...+ ....|..   ..+
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~---~~L  199 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPD---KNL  199 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-T---TC-
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcc---cCC
Confidence            444556643 44443 32222 23344444455677788888999999999999999999987543 5555655   679


Q ss_pred             CeEEEEeCC
Q 017971          329 PKMVVWDGN  337 (363)
Q Consensus       329 P~~vi~~~~  337 (363)
                      |++++|...
T Consensus       200 PtllvYk~G  208 (265)
T PF02114_consen  200 PTLLVYKNG  208 (265)
T ss_dssp             SEEEEEETT
T ss_pred             CEEEEEECC
Confidence            999999964

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=92.78  E-value=0.66  Score=46.12  Aligned_cols=88  Identities=10%  Similarity=0.117  Sum_probs=62.4

Q ss_pred             cCCCcEEEEEEeCCChhhHHHHHHHH---HHHHHhCCCcEEEEEeccC----chhHHhhcCCCCCCCCCeEEEEeCCCCe
Q 017971          268 DDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANRELVFCYVGIKQ----FADFADTFEANKKSKLPKMVVWDGNENY  340 (363)
Q Consensus       268 ~~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~f~~vd~~~----~~~~~~~~gi~~~~~~P~~vi~~~~~~y  340 (363)
                      ..++++++-|..+ -....+.+....   .++.++++++.+..+|.++    ..++++.+++   ...|++++++++|+.
T Consensus       472 ~~gK~VlVdF~A~-WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v---~g~Pt~~~~~~~G~~  547 (571)
T PRK00293        472 GKGKPVMLDLYAD-WCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV---LGLPTILFFDAQGQE  547 (571)
T ss_pred             hcCCcEEEEEECC-cCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC---CCCCEEEEECCCCCC
Confidence            3457777777643 455555544432   4566666778888899874    3578899998   679999999988764


Q ss_pred             ---eEEEEEEeehhhhhHhhhh
Q 017971          341 ---LTVSINVLKTRVCFFMLTL  359 (363)
Q Consensus       341 ---~~~~~~~~~~~~~~~~~~~  359 (363)
                         ....+....+++.+++...
T Consensus       548 i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        548 IPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             cccccccCCCCHHHHHHHHHHh
Confidence               5667888888888777654

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=92.67  E-value=1.2  Score=36.47  Aligned_cols=84  Identities=10%  Similarity=0.162  Sum_probs=52.4

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEecc----------------------CchhHHhhcCCCCCC
Q 017971          271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK----------------------QFADFADTFEANKKS  326 (363)
Q Consensus       271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~----------------------~~~~~~~~~gi~~~~  326 (363)
                      +++++.|+ .............+.++++++.+  +.++.++.+                      ......+.+|+   .
T Consensus        62 k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v---~  137 (173)
T PRK03147         62 KGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV---G  137 (173)
T ss_pred             CEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC---C
Confidence            45555555 33444455555666666655543  555555432                      22456788888   5


Q ss_pred             CCCeEEEEeCCCCee-EEEEEEeehhhhhHhhh
Q 017971          327 KLPKMVVWDGNENYL-TVSINVLKTRVCFFMLT  358 (363)
Q Consensus       327 ~~P~~vi~~~~~~y~-~~~~~~~~~~~~~~~~~  358 (363)
                      ..|..++++++|+.- ...+....+.+..++..
T Consensus       138 ~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~  170 (173)
T PRK03147        138 PLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK  170 (173)
T ss_pred             CcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence            689999999998644 45777777777777654

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=92.56  E-value=0.54  Score=37.92  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=47.1

Q ss_pred             cCCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCC
Q 017971           28 GRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLK   93 (363)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~   93 (363)
                      ..|..+|+...+..++..+.|++-       .+++++++||. .+++-|-..+-.|+....+++..+
T Consensus         5 ~~G~~aPdF~Lp~~~g~~v~Lsd~-------~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~   64 (157)
T COG1225           5 KVGDKAPDFELPDQDGETVSLSDL-------RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG   64 (157)
T ss_pred             CCCCcCCCeEeecCCCCEEehHHh-------cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC
Confidence            346778888888888888777765       56789999997 478889899899998888887654

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=92.50  E-value=0.89  Score=35.57  Aligned_cols=82  Identities=13%  Similarity=0.240  Sum_probs=50.4

Q ss_pred             CChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971          258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN  337 (363)
Q Consensus       258 lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~  337 (363)
                      ++.+....+....++.-++++...=..........+.++|+..+++.+-++.-++++..++.+--+.....|++++++.+
T Consensus        28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~  107 (129)
T PF14595_consen   28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD  107 (129)
T ss_dssp             --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred             CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence            44566666666667777777766677777888999999999988877777766666677766543224678999999987


Q ss_pred             CC
Q 017971          338 EN  339 (363)
Q Consensus       338 ~~  339 (363)
                      |+
T Consensus       108 ~~  109 (129)
T PF14595_consen  108 GK  109 (129)
T ss_dssp             --
T ss_pred             CC
Confidence            53

>TIGR02740 TraF-like TraF-like protein

Probab=92.36  E-value=1.3  Score=39.61  Aligned_cols=87  Identities=10%  Similarity=0.031  Sum_probs=61.3

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC---------chhHHhhcCCCCCCCCCeEEEEeCC-C
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---------FADFADTFEANKKSKLPKMVVWDGN-E  338 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~---------~~~~~~~~gi~~~~~~P~~vi~~~~-~  338 (363)
                      +++.++.|+. ......+.....|+++++++.- +..+-+|+..         .....+.+|+   ...|++++++++ |
T Consensus       166 ~k~~Lv~F~A-swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV---~~vPtl~Lv~~~~~  241 (271)
T TIGR02740       166 KKSGLFFFFK-SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI---RTVPAVFLADPDPN  241 (271)
T ss_pred             CCeEEEEEEC-CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC---CcCCeEEEEECCCC
Confidence            3556666654 4677778889999999999863 4455556532         2457788998   679999999995 6


Q ss_pred             CeeEE-EEEEeehhhhhHhhhhh
Q 017971          339 NYLTV-SINVLKTRVCFFMLTLL  360 (363)
Q Consensus       339 ~y~~~-~~~~~~~~~~~~~~~~~  360 (363)
                      +.... .|.+..+.+...+..+.
T Consensus       242 ~v~~v~~G~~s~~eL~~~i~~~a  264 (271)
T TIGR02740       242 QFTPIGFGVMSADELVDRILLAA  264 (271)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHh
Confidence            66544 47778888777776543

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=92.33  E-value=0.25  Score=46.91  Aligned_cols=54  Identities=13%  Similarity=0.286  Sum_probs=38.6

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhh---hh---------CCcCcCCEEEEEeCCE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA---SK---------QEIDAFPTLKIFMHGI  128 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~---~~---------~~i~~~Pt~~~~~~g~  128 (363)
                      ++.|..+||++|++....+.+.       +  +.+-.+|.++++...   ++         .|.+++|++++  +|+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~-------g--i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~   69 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN-------D--IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV   69 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-------C--CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence            6789999999998887766652       2  777788888766322   22         36788999965  454

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=91.55  E-value=1.1  Score=34.28  Aligned_cols=37  Identities=11%  Similarity=0.045  Sum_probs=29.8

Q ss_pred             hhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhh
Q 017971          314 ADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVC  353 (363)
Q Consensus       314 ~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~  353 (363)
                      ..+.+.|++   ...|++++++++|..+...+-..+.+|.
T Consensus        83 ~~~~~~~~i---~~~P~~~vid~~gi~~~~~g~~~~~~~~  119 (123)
T cd03011          83 GVISARWGV---SVTPAIVIVDPGGIVFVTTGVTSEWGLR  119 (123)
T ss_pred             cHHHHhCCC---CcccEEEEEcCCCeEEEEeccCCHHHHH
Confidence            468888988   6789999999998777777777777664

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.26  E-value=2  Score=38.41  Aligned_cols=101  Identities=12%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhhcCCCcccCChhhHHhhhc-CCCc-EEEEEEeC----CChhhHHHHHHHHHHHHHhCC------C---cE
Q 017971          240 EEFLEEFIKQNFLPLSVPINQDTLNLLKD-DKRK-IVLAIVED----ETEEKSQKLVTTLKAAASANR------E---LV  304 (363)
Q Consensus       240 ~~~l~~fi~~~~~p~~~~lt~~~~~~l~~-~~~~-~~i~~~~~----~~~~~~~~~~~~l~~~a~~~~------~---~~  304 (363)
                      .+++.+-..-.+...+..++.+++..+.. .+++ .+|+++.-    ....-..+..++++-+|..++      +   +-
T Consensus        27 s~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklF  106 (331)
T KOG2603|consen   27 SNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLF  106 (331)
T ss_pred             HHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEE
Confidence            34444444434455567777777777544 3344 33333321    122223445577777776533      1   67


Q ss_pred             EEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC-CCeeEE
Q 017971          305 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENYLTV  343 (363)
Q Consensus       305 f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~-~~y~~~  343 (363)
                      |+.||.++-++..+.|++   ...|.++++.|+ |+....
T Consensus       107 F~~Vd~~e~p~~Fq~l~l---n~~P~l~~f~P~~~n~~~s  143 (331)
T KOG2603|consen  107 FCMVDYDESPQVFQQLNL---NNVPHLVLFSPAKGNKKRS  143 (331)
T ss_pred             EEEEeccccHHHHHHhcc---cCCCeEEEeCCCccccccC
Confidence            999999999999999999   568999999987 544433

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=90.01  E-value=1.5  Score=32.81  Aligned_cols=68  Identities=21%  Similarity=0.256  Sum_probs=42.8

Q ss_pred             hHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-hhhhh----CCcCcCCEEEEEeC
Q 017971           52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RLASK----QEIDAFPTLKIFMH  126 (363)
Q Consensus        52 ~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~~~----~~i~~~Pt~~~~~~  126 (363)
                      ..++++.++  -+|.|.-+||++|+++...|.+       .+....+..+|-..+. ++-+.    -+-+..|.+++  +
T Consensus         6 ~v~~~i~~~--~VVifSKs~C~~c~~~k~ll~~-------~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~   74 (104)
T KOG1752|consen    6 KVRKMISEN--PVVIFSKSSCPYCHRAKELLSD-------LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--G   74 (104)
T ss_pred             HHHHHhhcC--CEEEEECCcCchHHHHHHHHHh-------CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--C
Confidence            455666553  3455888999999998777776       2334667777766543 33332    24568898765  5


Q ss_pred             CEEE
Q 017971          127 GIPT  130 (363)
Q Consensus       127 g~~~  130 (363)
                      |+.+
T Consensus        75 Gk~i   78 (104)
T KOG1752|consen   75 GKFI   78 (104)
T ss_pred             CEEE
Confidence            5444

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=89.71  E-value=7.3  Score=31.41  Aligned_cols=86  Identities=13%  Similarity=0.083  Sum_probs=57.1

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC---ch-------hHH-hhc---CCCCCCCCCeEEEEe
Q 017971          271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---FA-------DFA-DTF---EANKKSKLPKMVVWD  335 (363)
Q Consensus       271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~---~~-------~~~-~~~---gi~~~~~~P~~vi~~  335 (363)
                      +..++.|+. .-....++....+++++++++- +..+-+|...   ++       ... ..+   ++   ...|+.+++|
T Consensus        51 ~~~lvnFWA-sWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v---~~iPTt~LID  126 (153)
T TIGR02738        51 DYALVFFYQ-STCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRP---VVTPATFLVN  126 (153)
T ss_pred             CCEEEEEEC-CCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCC---CCCCeEEEEe
Confidence            445666664 4677778888899999888752 3333444321   11       122 223   33   5789999999


Q ss_pred             CCCC--eeEEEEEEeehhhhhHhhhhh
Q 017971          336 GNEN--YLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       336 ~~~~--y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++|+  +....|.+..++++..+.++|
T Consensus       127 ~~G~~i~~~~~G~~s~~~l~~~I~~ll  153 (153)
T TIGR02738       127 VNTRKAYPVLQGAVDEAELANRMDEIL  153 (153)
T ss_pred             CCCCEEEEEeecccCHHHHHHHHHHhC
Confidence            9965  556789999998888877765

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=89.17  E-value=0.92  Score=34.06  Aligned_cols=80  Identities=16%  Similarity=0.161  Sum_probs=53.7

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeC-CChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      +++++.+++......+...++++-.+ ....+..+..=++-++.+.+.+ +..+.++......+...||+   ...|+++
T Consensus        11 ~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv---~~~PaLv   87 (107)
T PF07449_consen   11 WPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGV---RRWPALV   87 (107)
T ss_dssp             EEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT----TSSSEEE
T ss_pred             CeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCC---ccCCeEE
Confidence            55666777777766655555444322 2233334445577788888888 77888886666789999999   6799999


Q ss_pred             EEeCC
Q 017971          333 VWDGN  337 (363)
Q Consensus       333 i~~~~  337 (363)
                      +++..
T Consensus        88 f~R~g   92 (107)
T PF07449_consen   88 FFRDG   92 (107)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99876

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=88.97  E-value=0.52  Score=40.20  Aligned_cols=40  Identities=18%  Similarity=0.409  Sum_probs=29.2

Q ss_pred             CCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEe
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVD  102 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd  102 (363)
                      +++-+|+|++-.|+||..+.|.+   ..+.+.+.+   ++.+..+.
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~---~v~~~~~~   79 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE---GTKMTKYH   79 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC---CCeEEEec
Confidence            35779999999999999999876   566655533   35555544

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.89  E-value=2.5  Score=36.57  Aligned_cols=87  Identities=13%  Similarity=0.143  Sum_probs=63.7

Q ss_pred             cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEE--
Q 017971          268 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSI--  345 (363)
Q Consensus       268 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~--  345 (363)
                      ..+...+++=+.-.-.-..+.+..++..+|.+|++..|..||.++........|+   ...|+++++....|.-..++  
T Consensus        18 ~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV---~amPTFiff~ng~kid~~qGAd   94 (288)
T KOG0908|consen   18 AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGV---NAMPTFIFFRNGVKIDQIQGAD   94 (288)
T ss_pred             ccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCc---ccCceEEEEecCeEeeeecCCC
Confidence            3333343333322344455888999999999999999999999998899999999   67899999998866555554  


Q ss_pred             -EEeehhhhhHhh
Q 017971          346 -NVLKTRVCFFML  357 (363)
Q Consensus       346 -~~~~~~~~~~~~  357 (363)
                       .-+.+.|...++
T Consensus        95 ~~gLe~kv~~~~s  107 (288)
T KOG0908|consen   95 ASGLEEKVAKYAS  107 (288)
T ss_pred             HHHHHHHHHHHhc
Confidence             345666665554

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=88.72  E-value=9.7  Score=29.86  Aligned_cols=75  Identities=24%  Similarity=0.343  Sum_probs=48.0

Q ss_pred             eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC----cCCEEEEEeCCEEEeecCCCC
Q 017971           62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID----AFPTLKIFMHGIPTEYYGPRK  137 (363)
Q Consensus        62 ~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----~~Pt~~~~~~g~~~~y~g~~~  137 (363)
                      .-++.+++|.|+=|+.+....+       ..+  +.+..+..++-..+.++++|.    +--|..+  +|..  .+|-..
T Consensus        26 ~~~~vyksPnCGCC~~w~~~mk-------~~G--f~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~--vEGHVP   92 (149)
T COG3019          26 TEMVVYKSPNCGCCDEWAQHMK-------ANG--FEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYY--VEGHVP   92 (149)
T ss_pred             eeEEEEeCCCCccHHHHHHHHH-------hCC--cEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEE--EeccCC
Confidence            4567799999999976654444       122  667777777777788888875    2334332  3322  257777


Q ss_pred             HHHHHHHHHhhc
Q 017971          138 AELLVRYLKKFV  149 (363)
Q Consensus       138 ~~~i~~~i~~~~  149 (363)
                      ++.|..++.+.-
T Consensus        93 a~aI~~ll~~~p  104 (149)
T COG3019          93 AEAIARLLAEKP  104 (149)
T ss_pred             HHHHHHHHhCCC
Confidence            777777765543

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=88.69  E-value=4.8  Score=30.96  Aligned_cols=76  Identities=11%  Similarity=0.040  Sum_probs=44.0

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEec-----------------------cCchhHHhhcCCCCCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGI-----------------------KQFADFADTFEANKKS  326 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~-----------------------~~~~~~~~~~gi~~~~  326 (363)
                      ++++++.|+. .......+....+.++++.++ +.++.|+.                       +....+.+.+|+   .
T Consensus        25 gk~vvv~F~a-~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v---~   99 (127)
T cd03010          25 GKPYLLNVWA-SWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV---Y   99 (127)
T ss_pred             CCEEEEEEEc-CcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC---C
Confidence            4566666663 344455555666666655542 44444332                       223346666777   5


Q ss_pred             CCCeEEEEeCCCC-eeEEEEEEeeh
Q 017971          327 KLPKMVVWDGNEN-YLTVSINVLKT  350 (363)
Q Consensus       327 ~~P~~vi~~~~~~-y~~~~~~~~~~  350 (363)
                      ..|..++++++|+ -+...|.+..+
T Consensus       100 ~~P~~~~ld~~G~v~~~~~G~~~~~  124 (127)
T cd03010         100 GVPETFLIDGDGIIRYKHVGPLTPE  124 (127)
T ss_pred             CCCeEEEECCCceEEEEEeccCChH
Confidence            6899999999986 44555554443

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=88.53  E-value=2.3  Score=29.32  Aligned_cols=58  Identities=26%  Similarity=0.257  Sum_probs=46.9

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .|..|-+..-+.+++.-..+.++-+...  +.++.+-.+|..++|++++.++|-.+||++
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l--~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv   60 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELL--GGPYELEVIDVLKQPQLAEEDKIVATPTLV   60 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhc--CCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence            4555666666778888888888877654  346999999999999999999999999976

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=87.54  E-value=4.4  Score=39.64  Aligned_cols=97  Identities=14%  Similarity=0.115  Sum_probs=66.0

Q ss_pred             eecCChHHHHHHHHhcCCcccEEEeecCChh-HHHHHHHHhhhhh--HHHH----------h--hhcchhhhhhcCCCCC
Q 017971          154 SILNSDAEVSDFVENAGTFFPLFIGFGLDES-VMSNLALKYKKKA--WFAV----------A--KDFSEDTMVLYDFDKV  218 (363)
Q Consensus       154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~a~~~~~~~--~~~~----------~--~~~~~~~~~~~~~~~~  218 (363)
                      ..+++..++++.+.+++. .|+++.|+.++= .++...+......  .+..          .  .....++.++++.-+.
T Consensus       457 q~~s~~~~L~~~la~~~~-~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~  535 (569)
T COG4232         457 QPISPLAELDQALAEAKA-KPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGV  535 (569)
T ss_pred             hccCCHHHHHHHHHhCCC-CcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence            345566689999998875 478999987652 2333222211111  1111          0  0123556889999999


Q ss_pred             CeEEEEcCCCCCcccccCCCCHHHHHHHHHhhc
Q 017971          219 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF  251 (363)
Q Consensus       219 p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~  251 (363)
                      |++++|.++.+++....|.++.+.+.+++++..
T Consensus       536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~  568 (569)
T COG4232         536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERAA  568 (569)
T ss_pred             CEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence            999999988788888999999999999998753

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=87.52  E-value=4.3  Score=39.70  Aligned_cols=42  Identities=10%  Similarity=0.116  Sum_probs=34.3

Q ss_pred             chhHHhhcCCCCCCCCCeEEEEeCCCCe-eEEEEEEeehhhhhHhh
Q 017971          313 FADFADTFEANKKSKLPKMVVWDGNENY-LTVSINVLKTRVCFFML  357 (363)
Q Consensus       313 ~~~~~~~~gi~~~~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~  357 (363)
                      ...+.+.|++   ..+|+.++++++|+. ....|.+..+.+..++.
T Consensus       128 ~~~lak~fgV---~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        128 GGTLAQSLNI---SVYPSWAIIGKDGDVQRIVKGSISEAQALALIR  170 (521)
T ss_pred             cHHHHHHcCC---CCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence            4567788888   679999999999864 67788888888888876

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=87.25  E-value=4.6  Score=31.28  Aligned_cols=23  Identities=17%  Similarity=0.512  Sum_probs=18.4

Q ss_pred             hHHhhcCCCCCCCCCeEEEEeCCCCe
Q 017971          315 DFADTFEANKKSKLPKMVVWDGNENY  340 (363)
Q Consensus       315 ~~~~~~gi~~~~~~P~~vi~~~~~~y  340 (363)
                      .+.+.+|+   ...|++++++++|+.
T Consensus        90 ~~~~~~~v---~~~P~~~lid~~G~i  112 (131)
T cd03009          90 RLNRTFKI---EGIPTLIILDADGEV  112 (131)
T ss_pred             HHHHHcCC---CCCCEEEEECCCCCE
Confidence            45667888   578999999999874

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=86.43  E-value=5.4  Score=30.16  Aligned_cols=85  Identities=18%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             hhhcCCCcEEEEEEeCCChhhHHHHHH-HHH--HHHHhCC-CcEEEEEecc--CchhHHhhcCCCCCCCCCeEEEEeC-C
Q 017971          265 LLKDDKRKIVLAIVEDETEEKSQKLVT-TLK--AAASANR-ELVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDG-N  337 (363)
Q Consensus       265 ~l~~~~~~~~i~~~~~~~~~~~~~~~~-~l~--~~a~~~~-~~~f~~vd~~--~~~~~~~~~gi~~~~~~P~~vi~~~-~  337 (363)
                      .....++++++.+..+ .....+.+.+ .++  .+.+... ++.+..+|..  +..++++.++.   ..+|+++++++ +
T Consensus        12 ~Ak~~~K~llv~~~~~-~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~---~~~P~~~~i~~~~   87 (114)
T cd02958          12 EAKSEKKWLLVYLQSE-DEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKV---DKYPHIAIIDPRT   87 (114)
T ss_pred             HHHhhCceEEEEEecC-CcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCc---cCCCeEEEEeCcc
Confidence            3445566676666544 4434444332 232  2333332 3555556665  35668888887   67999999999 6


Q ss_pred             CC-eeEEEEEEeehhhh
Q 017971          338 EN-YLTVSINVLKTRVC  353 (363)
Q Consensus       338 ~~-y~~~~~~~~~~~~~  353 (363)
                      |+ -+...|.+..+++.
T Consensus        88 g~~l~~~~G~~~~~~f~  104 (114)
T cd02958          88 GEVLKVWSGNITPEDLL  104 (114)
T ss_pred             CcEeEEEcCCCCHHHHH
Confidence            63 55666665555443

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=86.39  E-value=3.1  Score=34.39  Aligned_cols=48  Identities=17%  Similarity=0.229  Sum_probs=37.3

Q ss_pred             CCCeEEEEEECCCC-hhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 017971           59 SFDYILVDFYAPWC-GHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY  106 (363)
Q Consensus        59 ~~~~~lv~fy~~~C-~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~  106 (363)
                      .+++++|.|.=..| ..|-.....+.++.+.+...+.++.+..|-.+-+
T Consensus        51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~   99 (174)
T PF02630_consen   51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE   99 (174)
T ss_dssp             TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred             CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence            67899999888888 7898888999999888887655677777766543

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=86.37  E-value=2.2  Score=34.54  Aligned_cols=54  Identities=11%  Similarity=0.079  Sum_probs=35.1

Q ss_pred             CeEEEE-EECCCChhhhhH-HHHHHHHHHHhhcCCCCeEEEEEeCcc---chhhhhhCCc
Q 017971           61 DYILVD-FYAPWCGHCKRL-APQLDEAAPILAKLKEPIVIAKVDADK---YSRLASKQEI  115 (363)
Q Consensus        61 ~~~lv~-fy~~~C~~C~~~-~~~~~~~a~~~~~~~~~v~~~~vd~~~---~~~l~~~~~i  115 (363)
                      +++++. |...||+.|... .+.+.+..+++.+.+-. .+..+.++.   ....++++++
T Consensus        30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~-~V~~iS~D~~~~~~~~~~~~~~   88 (155)
T cd03013          30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVD-EVICVSVNDPFVMKAWGKALGA   88 (155)
T ss_pred             CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCC-EEEEEECCCHHHHHHHHHhhCC
Confidence            455555 445799999998 99999999988765421 244444433   2345556665

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.07  E-value=1.5  Score=37.06  Aligned_cols=64  Identities=17%  Similarity=0.306  Sum_probs=49.4

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCC-C--CCCCCeEEEEeCC
Q 017971          273 IVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEAN-K--KSKLPKMVVWDGN  337 (363)
Q Consensus       273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~-~--~~~~P~~vi~~~~  337 (363)
                      .+|-|+. .-+.....+-..+.+++.+|..  ++|+.||.-.+++....|+++ +  ..++|+++++.+.
T Consensus       147 WlIeFfa-~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~g  215 (265)
T KOG0914|consen  147 WLIEFFA-CWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKG  215 (265)
T ss_pred             EEEEEEe-ecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccc
Confidence            4444443 3455566677888888888875  999999999999999999994 1  1578999999876

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=86.07  E-value=8.7  Score=26.67  Aligned_cols=65  Identities=12%  Similarity=-0.006  Sum_probs=44.0

Q ss_pred             CChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEE-eehhhhhH
Q 017971          281 ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINV-LKTRVCFF  355 (363)
Q Consensus       281 ~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~-~~~~~~~~  355 (363)
                      ......+.....++++++++.. +.|..+|.   .+.+..+|+   ...|++++   +|+-. ..+.. ..+++.++
T Consensus         8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v---~~vPti~i---~G~~~-~~G~~~~~~~l~~~   74 (76)
T TIGR00412         8 TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV---TATPGVAV---DGELV-IMGKIPSKEEIKEI   74 (76)
T ss_pred             CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC---CcCCEEEE---CCEEE-EEeccCCHHHHHHH
Confidence            5667778888899999998876 88888872   234667888   67899999   44333 44433 22555443

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PF13728 TraF: F plasmid transfer operon protein

Probab=86.02  E-value=6.4  Score=33.79  Aligned_cols=78  Identities=12%  Similarity=0.014  Sum_probs=54.1

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEecc---------CchhHHhhcCCCCCCCCCeEEEEeCCC-Ce
Q 017971          272 KIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK---------QFADFADTFEANKKSKLPKMVVWDGNE-NY  340 (363)
Q Consensus       272 ~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~---------~~~~~~~~~gi~~~~~~P~~vi~~~~~-~y  340 (363)
                      ...++||.+.+..-.+.+..+++.++.+|.= +..+-+|+.         ......+.||+   ...|++++.++++ ++
T Consensus       121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v---~~~Pal~Lv~~~~~~~  197 (215)
T PF13728_consen  121 KYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV---KVTPALFLVNPNTKKW  197 (215)
T ss_pred             CeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC---CcCCEEEEEECCCCeE
Confidence            3445555566788888999999999999843 555556653         23567788998   5789999999975 65


Q ss_pred             eEE-EEEEeehhh
Q 017971          341 LTV-SINVLKTRV  352 (363)
Q Consensus       341 ~~~-~~~~~~~~~  352 (363)
                      ++. .|-++.+++
T Consensus       198 ~pv~~G~~s~~~L  210 (215)
T PF13728_consen  198 YPVSQGFMSLDEL  210 (215)
T ss_pred             EEEeeecCCHHHH
Confidence            554 444444443

>smart00594 UAS UAS domain

Probab=86.00  E-value=5  Score=30.85  Aligned_cols=71  Identities=17%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             HhhhcCCCcEEEEEEeCCChhhHHHHH-HHHH--HHHHhCC-CcEEEEEecc--CchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971          264 NLLKDDKRKIVLAIVEDETEEKSQKLV-TTLK--AAASANR-ELVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGN  337 (363)
Q Consensus       264 ~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~l~--~~a~~~~-~~~f~~vd~~--~~~~~~~~~gi~~~~~~P~~vi~~~~  337 (363)
                      ......++++++.+..+ .....+.+. +++.  .+.+... ++.+.-+|..  +..++.+.+++   .++|++++++++
T Consensus        21 ~~Ak~~~K~~lv~~~~~-~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~---~~~P~~~~l~~~   96 (122)
T smart00594       21 QEASRQRRLLWLYLHSQ-DSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKL---DSFPYVAIVDPR   96 (122)
T ss_pred             HHHHhhcCCEEEEEeCC-CCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCc---CCCCEEEEEecC
Confidence            33445566777776654 333333333 2222  1222222 4555555654  34568888888   679999999998


Q ss_pred             C
Q 017971          338 E  338 (363)
Q Consensus       338 ~  338 (363)
                      |
T Consensus        97 ~   97 (122)
T smart00594       97 T   97 (122)
T ss_pred             C
Confidence            5

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=84.65  E-value=13  Score=27.13  Aligned_cols=72  Identities=17%  Similarity=0.164  Sum_probs=47.3

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCE--EEeecCCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI--PTEYYGPR  136 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~--~~~y~g~~  136 (363)
                      +++..++.|..+. ..|+......+++|..    .+++.+-..+...           ..|++.+..+|+  .++|.|-.
T Consensus        18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~l----SdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP   81 (94)
T cd02974          18 ENPVELVASLDDS-EKSAELLELLEEIASL----SDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIP   81 (94)
T ss_pred             CCCEEEEEEeCCC-cchHHHHHHHHHHHHh----CCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecC
Confidence            3456677777765 8888887777777754    2336554333211           479999987763  47899977


Q ss_pred             CHHHHHHHHH
Q 017971          137 KAELLVRYLK  146 (363)
Q Consensus       137 ~~~~i~~~i~  146 (363)
                      .-.++..++.
T Consensus        82 ~GhEf~Slil   91 (94)
T cd02974          82 MGHEFTSLVL   91 (94)
T ss_pred             CchhHHHHHH
Confidence            7666666654

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=83.43  E-value=3.2  Score=33.25  Aligned_cols=51  Identities=12%  Similarity=0.170  Sum_probs=34.8

Q ss_pred             EEEEECC------CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhh----hhCCc----CcCCEEEE
Q 017971           64 LVDFYAP------WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA----SKQEI----DAFPTLKI  123 (363)
Q Consensus        64 lv~fy~~------~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i----~~~Pt~~~  123 (363)
                      +|.|+++      +|++|++....++..         .|.+-.+|.+.++++.    +..+-    ..+|++++
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI   66 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV   66 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence            4556666      899998887777643         2778888988765543    33343    67888775

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=83.19  E-value=9.1  Score=24.08  Aligned_cols=53  Identities=19%  Similarity=0.223  Sum_probs=35.7

Q ss_pred             ChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHh---hcCCCCCCCCCeEEEEeCC
Q 017971          282 TEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFAD---TFEANKKSKLPKMVVWDGN  337 (363)
Q Consensus       282 ~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~---~~gi~~~~~~P~~vi~~~~  337 (363)
                      ...........+.+++...+++.+..+|........+   .++.   ...|.+++++.+
T Consensus         8 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~P~~~~~~~~   63 (69)
T cd01659           8 WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV---GGVPTLVVFGPG   63 (69)
T ss_pred             CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC---ccccEEEEEeCC
Confidence            3344555666666654445569999999987655444   4554   678999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>KOG3414 consensus Component of the U4/U6

Probab=82.82  E-value=9.8  Score=29.27  Aligned_cols=67  Identities=16%  Similarity=0.276  Sum_probs=48.9

Q ss_pred             hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEe
Q 017971          266 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD  335 (363)
Q Consensus       266 l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~  335 (363)
                      +......++++=|..+.++..-..-+.|.++|...++ .....+|.++-+.+.+.+++   +..|+++.+=
T Consensus        18 I~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l---~~p~tvmfFf   85 (142)
T KOG3414|consen   18 ILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYEL---YDPPTVMFFF   85 (142)
T ss_pred             HhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcc---cCCceEEEEE
Confidence            4444455666667676777776777888899999888 44555788888999999999   5567776543

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=82.47  E-value=11  Score=32.24  Aligned_cols=59  Identities=17%  Similarity=0.125  Sum_probs=38.9

Q ss_pred             ChhhHHHhHcCCCeEEEEEECCCC-hhhhhHHHHHHHHHHHhh-cCCCCeEEEEEeCccch
Q 017971           49 DESNFDSAISSFDYILVDFYAPWC-GHCKRLAPQLDEAAPILA-KLKEPIVIAKVDADKYS  107 (363)
Q Consensus        49 ~~~~f~~~l~~~~~~lv~fy~~~C-~~C~~~~~~~~~~a~~~~-~~~~~v~~~~vd~~~~~  107 (363)
                      +.+.+...--++++++|.|-=+.| .-|-.....+.++.+++. ..+.++.+.-|-++-++
T Consensus        56 ~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPer  116 (207)
T COG1999          56 DGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPER  116 (207)
T ss_pred             CCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCC
Confidence            334444433377899999876666 568888888888888777 55556666655555443

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=81.90  E-value=9.6  Score=33.62  Aligned_cols=78  Identities=12%  Similarity=0.041  Sum_probs=55.0

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCc---------hhHHhhcCCCCCCCCCeEEEEeCC-CCee
Q 017971          273 IVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF---------ADFADTFEANKKSKLPKMVVWDGN-ENYL  341 (363)
Q Consensus       273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~---------~~~~~~~gi~~~~~~P~~vi~~~~-~~y~  341 (363)
                      ..++||...+..-.+.+..+++.++.+|.= +..+-+|+.-.         ...++.+|+   ...|++++.+++ ++++
T Consensus       152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v---~~~Pal~Lv~~~t~~~~  228 (256)
T TIGR02739       152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGV---KYFPALYLVNPKSQKMS  228 (256)
T ss_pred             eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCC---ccCceEEEEECCCCcEE
Confidence            444445456777788999999999999875 66667787632         336678888   568999999998 5655


Q ss_pred             EE-EEEEeehhhh
Q 017971          342 TV-SINVLKTRVC  353 (363)
Q Consensus       342 ~~-~~~~~~~~~~  353 (363)
                      +. .|-++.+++.
T Consensus       229 pv~~G~iS~deL~  241 (256)
T TIGR02739       229 PLAYGFISQDELK  241 (256)
T ss_pred             EEeeccCCHHHHH
Confidence            54 4455555443

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	363
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		8e-24
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		9e-23
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		3e-20
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		1e-19
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		1e-19
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		5e-19
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		9e-18
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		7e-17
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		9e-16
2djj_A	121	Solution Structure Of The A' Domain Of Thermophilic		2e-13
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		1e-12
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		1e-12
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		2e-12
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		5e-12
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		7e-12
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		3e-11
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		4e-11
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		4e-11
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		1e-10
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		1e-10
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		2e-10
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		2e-10
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		3e-10
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		3e-10
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		6e-10
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		6e-10
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		8e-10
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		8e-10
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		8e-10
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		8e-10
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		8e-10
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		8e-10
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		8e-10
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		9e-10
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		1e-09
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		1e-09
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		1e-09
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		1e-09
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		1e-09
2o7k_A	107	S. Aureus Thioredoxin Length = 107		1e-09
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		1e-09
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		1e-09
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		1e-09
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		2e-09
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		2e-09
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		2e-09
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		3e-09
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		3e-09
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		3e-09
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		3e-09
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		4e-09
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		4e-09
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		4e-09
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		5e-09
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		7e-09
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		8e-09
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		9e-09
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		9e-09
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		1e-08
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		1e-08
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		1e-08
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		1e-08
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		1e-08
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		1e-08
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		2e-08
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		2e-08
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		3e-08
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		3e-08
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		3e-08
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		4e-08
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		4e-08
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		4e-08
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-08
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		5e-08
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		6e-08
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		7e-08
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		7e-08
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		1e-07
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		2e-07
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		2e-07
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		3e-07
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		3e-07
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		4e-07
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		4e-07
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		5e-07
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		7e-07
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		8e-07
1oaz_A	123	Ige Fv Spe7 Complexed With A Recombinant Thioredoxi		8e-07
2f51_A	118	Structure Of Trichomonas Vaginalis Thioredoxin Leng		1e-06
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		2e-06
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		2e-06
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		2e-06
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		2e-06
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		3e-06
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		3e-06
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		4e-06
3tco_A	109	Crystallographic And Spectroscopic Characterization		5e-06
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		5e-06
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		6e-06
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		7e-06
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		1e-05
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		2e-05
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		2e-05
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		2e-05
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		2e-05
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		3e-05
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		3e-05
3qdn_A	287	Putative Thioredoxin Protein From Salmonella Typhim		4e-05
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		5e-05
3qou_A	287	Crystal Structure Of E. Coli Ybbn Length = 287		5e-05
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		7e-05
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		1e-04
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		1e-04
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		2e-04
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		2e-04
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		2e-04
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		3e-04
3vfi_A	104	Crystal Structure Of A Metagenomic Thioredoxin Leng		3e-04
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		5e-04
3h79_A	127	Crystal Structure Of Trypanosoma Cruzi Thioredoxin-		5e-04
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		6e-04

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score =  107 bits (268), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 71/103 (68%)
Query: 43  GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           G  + L + NFD  +++ D ILV+FYAPWCGHCK+LAP+ ++AA  L+K   PI +AKVD
Sbjct: 7   GVTLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 66
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145
           A + + LA + ++  +PTLKIF  G P +Y GPR+   +V Y+
Sbjct: 67  ATEQTDLAKRFDVSGYPTLKIFRKGRPFDYNGPREKYGIVDYM 109

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 77/121 (63%)
Query: 32  SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK 91
            SE++ + K +  V+ L+++NFD+ ++  D +L++FYAPWCGHCK+ AP+ ++ A IL  
Sbjct: 4   GSEDDLEVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKD 63
Query: 92  LKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAP 151
              PI +AK+DA   S LAS+ ++  +PT+KI   G   +Y G R  E +V  +++   P
Sbjct: 64  KDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQP 123
Query: 152 D 152
           D
Sbjct: 124 D 124

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 66/105 (62%)
Query: 48  LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107
           L++ NFD+ ++  D +L++FYAPWCGHCK+ AP+ ++ A  L     PI +AK+DA   S
Sbjct: 22  LNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS 81
Query: 108 RLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPD 152
            LASK ++  +PT+KI   G   +Y G R  E +V  +++   PD
Sbjct: 82  MLASKFDVSGYPTIKILKKGQAVDYDGSRTQEEIVAKVREVSQPD 126

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 3/110 (2%)
Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           V+ L +SNF  A+++  Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKVDA 
Sbjct: 9   VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 68
Query: 105 KYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAP 151
           + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P
Sbjct: 69  EESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP 118

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 127/291 (43%), Gaps = 30/291 (10%)
Query: 45  VIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           V+EL + NF+S IS   S   +LV+F+APWCGH KRLAP+ + AA    +LK  + +AKV
Sbjct: 3   VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAA---TRLKGIVPLAKV 59
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFVAPDVSILNSDA 160
           D    +   +K  +  +PTLKIF  G     Y GPR A+ +V +LKK   P    L ++ 
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEE 119
Query: 161 EVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPA 220
           E   F+ +       F      E+    L      +  +  A    E  +  YD D    
Sbjct: 120 EFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYD-DNGEG 178
Query: 221 LVALQPS------------YNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKD 268
           ++  +PS            Y E  +  G      +++FI++N   +   + +D  +L++ 
Sbjct: 179 IILFRPSHLTNKFEDKTVAYTEQKMTSGK-----IKKFIQENIFGICPHMTEDNKDLIQG 233
Query: 269 DKRKIVLAIVEDETEEKS-----QKLVTTLKAAASANRELVFCYVGIKQFA 314
               I    V+ E   K       +++   K    A  +L F     K F+
Sbjct: 234 KDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFS 284

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 45  VIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           V+EL + NF+S IS   S   +LV+F+APWCGHCKRLAP+ + AA    +LK  + +AKV
Sbjct: 3   VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAA---TRLKGIVPLAKV 59
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFVAP 151
           D    +   +K  +  +PTLKIF  G     Y GPR A+ +V +LKK   P
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP 110

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 81/142 (57%), Gaps = 8/142 (5%)
Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           D  V++L   +F+  I S D +L +F+APWCGHCK +AP+  +AA  L  +++ I +A++
Sbjct: 13  DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL--VEKNITLAQI 70
Query: 102 DADKYSRLASKQEIDAFPTLKIFMH---GIPTEYYGPRKAELLVRYLKKFVAPDVSILNS 158
           D  +   L  +  I  FP+LKIF +       +Y GPR AE +V+++ K   P V+++  
Sbjct: 71  DCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVV-- 128
Query: 159 DAEVSDFVENAGTFFPLFIGFG 180
            A++  ++ N     P+ +  G
Sbjct: 129 -ADLPAYLANETFVTPVIVQSG 149

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 60/101 (59%), Gaps = 6/101 (5%)
Query: 45  VIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
           VIEL  SNF+  +   D + LV+FYAPWCGHC+RL P+  +AA     LK+ + +  V+A
Sbjct: 19  VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAA---TALKDVVKVGAVNA 75
Query: 104 DKYSRLASKQEIDAFPTLKIFM--HGIPTEYYGPRKAELLV 142
           DK+  L  +  +  FPT+KIF      P +Y G R  E +V
Sbjct: 76  DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 116

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 43  GKVIELDESNFD-SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAP-ILAKLKEPIVIAK 100
           G VIEL + +FD + + S D  +V+FYAPWCGHCK L P+   AA  +  + K  + +A 
Sbjct: 7   GDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAA 66
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPR-KAELLVRYLKKFV--APDVSIL 156
           VDA     LAS+  I  FPT+KIF  G  P +Y G R +++++ R L  F   AP   +L
Sbjct: 67  VDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELL 126
Query: 157 NS 158
            S
Sbjct: 127 ES 128

>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal Protein Disulfide Isomerase Length = 121

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAK--LKEPIVIAKVDADKYSRLASKQEIDAFPT 120
           +L++FYAPWCGHCK LAP+ +E   + AK   K+ +VIAKVDA   +      EI  FPT
Sbjct: 28  VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDA---TANDVPDEIQGFPT 84
Query: 121 LKIF---MHGIPTEYYGPRKAELLVRYL 145
           +K++     G P  Y G R  E L++++
Sbjct: 85  IKLYPAGAKGQPVTYSGSRTVEDLIKFI 112

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 43  GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA----PILAKLKEPIVI 98
           G V+ L E+NFD  I+      + FYAPWCGHCK LAP  +E +    P LA +K    I
Sbjct: 7   GTVLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK----I 61
Query: 99  AKVDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYL 145
           A+VD      + SK  +  +PTL +F  G   +E+ G R  + L R++
Sbjct: 62  AEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 109

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Query: 41  IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL---KEPIV 97
           +  ++  LD  N D  +++ D  LV+FYA WC   + L P  +EA+ ++ +    +  +V
Sbjct: 3   LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVV 62
Query: 98  IAKVDADKYSRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYLKKFVAPDVSI 155
            A+VD D++S +A +  I  +PTLK+F +G     EY G R  + L  Y+++  +  +  
Sbjct: 63  FARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQE 122
Query: 156 LNSDAEVS 163
           +   AE++
Sbjct: 123 IRDLAEIT 130

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 46  IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
           I   ++ FDS IS  + ++VDF+A WCG CKR+AP  +E +    K+    V  KVD D+
Sbjct: 12  IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKM----VFIKVDVDE 67
Query: 106 YSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVA 150
            S +  K+ I + PT K++ +G   +         L + ++K+ A
Sbjct: 68  VSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 112

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA----PILAKLKEPIVIAK 100
           V+ L E+NFD  I+      + FYAPWCGHCK LAP  +E +    P LA +K    IA+
Sbjct: 7   VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK----IAE 61
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYL 145
           VD      + SK  +  +PTL +F  G   +E+ G R  + L R++
Sbjct: 62  VDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 107

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA----PILAKLKEPIVIAK 100
           V+ L E+NFD  I+      + FYAPWCGHCK LAP  +E +    P LA +K    IA+
Sbjct: 2   VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK----IAE 56
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYL 145
           VD      + SK  +  +PTL +F  G   +E+ G R  + L R++
Sbjct: 57  VDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 102

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 42  DGKVIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
           D  + EL   +FD AI + +Y  LV+FYAPWCGHCK+L+    +AA  L  + + +    
Sbjct: 16  DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQ-VAAVN 74
Query: 101 VDADKYSRLASKQEIDAFPTLKIF 124
            D +K   L +K +++ FPTL +F
Sbjct: 75  CDLNKNKALCAKYDVNGFPTLMVF 98

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCGHCK +AP LDE A    + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVS 154
            D+    A K  I   PTL +F +G   E    +   L    LK+F+  +++
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFLDANLA 108

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILA-KLKEPIVIAKVDA 103
           V+E DE  F   ++     LVDF+APWCG C+ ++P L+E A   A +LK    + KV+ 
Sbjct: 35  VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLK----VVKVNV 90
Query: 104 DKYSRLASKQEIDAFPTLKIFMHGIPTEYY---GPRKA--ELLVRYLK 146
           D++  LA++  + + PTL +F  G P   +    PR+   E L  YL+
Sbjct: 91  DEHPGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLE 138

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 43  GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
            K IE+ + NFD  +     +LVDF+A WC  C+ +AP L+E A    + +  +++AK+D
Sbjct: 2   AKPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIA---KEYEGKLLVAKLD 58
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTE 131
            D+  + A +  + + PT+ +F  G P E
Sbjct: 59  VDENPKTAXRYRVXSIPTVILFKDGQPVE 87

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 43  GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
            K IE+ + NFD  +     +LVDF+A WC  C+ +AP L+E A    + +  +++AK+D
Sbjct: 1   AKPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIA---KEYEGKLLVAKLD 57
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTE 131
            D+  + A +  + + PT+ +F  G P E
Sbjct: 58  VDENPKTAXRYRVXSIPTVILFKDGQPVE 86

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 42  DGKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
           DG V  +   NFD  +++ +  +L++FYAPWCGHCK L P+  E    L+K    IVIAK
Sbjct: 26  DGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPN-IVIAK 84
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGI---PTEYYGPRKAELLVRYLKK 147
           +DA   + + S  E+  FPT+          P +Y G R+    + YL++
Sbjct: 85  MDATA-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQR 133

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 41  IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
           I GKV  +D +    A      +LVDF+APWCG C+++APQ   AA   A L   + +AK
Sbjct: 45  ITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAA---ATLAGQVRLAK 101
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYLK 146
           +D   +  +A +  I   P   +F  G       G R A  LV +++
Sbjct: 102 IDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVR 148

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L E +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 54  DSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ 113
           D  ++S   ++VDF+A WCG CK L P+L++   ++AK    +V+AKVD D ++ LA + 
Sbjct: 25  DRVVNSETPVVVDFHAQWCGPCKILGPRLEK---MVAKQHGKVVMAKVDIDDHTDLAIEY 81
Query: 114 EIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKKFVA 150
           E+ A PT+    +G +  ++ G +  + L  +LKK + 
Sbjct: 82  EVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 119

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           D ++I L+   FD+A++S +   V+FY+P C HC  LAP   E A  +  L   + I  V
Sbjct: 96  DPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAV 152
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVAPDVSILNS 158
           +      L   + ++++P+L IF  G+   +Y G R  E LV +  + V   V+ L++
Sbjct: 153 NCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELST 210

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IAEEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           ++++ +++FDS + S    LVDF+A WCG CK +AP L+E A   A  +    I K+D D
Sbjct: 5   IVKVTDADFDSKVES-GVQLVDFWATWCGSCKMIAPVLEELA---ADYEGKADILKLDVD 60
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK--AELLVRYL 145
           +    A+K E+ + PTL +F  G P +    + P++  AE+L ++L
Sbjct: 61  ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 106

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE A    + +  + +AK++
Sbjct: 13  KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 69
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 70  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 113

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I + PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRSIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           ++++ +++FDS + S    LVDF+A WCG CK +AP L+E A   A  +    I K+D D
Sbjct: 6   IVKVTDADFDSKVES-GVQLVDFWATWCGTCKMIAPVLEELA---ADYEGKADILKLDVD 61
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK--AELLVRYL 145
           +    A+K E+ + PTL +F  G P +    + P++  AE+L ++L
Sbjct: 62  ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE A    + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            D+    A K  I   PTL +F +G
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 4   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 60
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 61  IDQNPGTAPKYGIRGTPTLLLFKNG---EVAATKVGALSKGQLKEFL 104

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            D+    A K  I   PTL +F +G
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            D+    A K  I   PTL +F +G
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I    +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADDYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           ++++ +++FDS + S    LVDF+A WCG CK +AP L+E A   A  +    I K+D D
Sbjct: 6   IVKVTDADFDSKVES-GVQLVDFWATWCGPCKMIAPVLEELA---ADYEGKADILKLDVD 61
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK--AELLVRYL 145
           +    A+K E+ + PTL +F  G P +    + P++  AE+L ++L
Sbjct: 62  ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAACKVGALSKGQLKEFL 103

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 51  SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA---KVDADKYS 107
           S FDSAI+    ++VDFYA WCG CK +AP ++       K  E    A   K+D D+  
Sbjct: 9   SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIE-------KFSEQYPQADFYKLDVDELG 61
Query: 108 RLASKQEIDAFPTLKIFMHG 127
            +A K E+ A PTL +F +G
Sbjct: 62  DVAQKNEVSAMPTLLLFKNG 81

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 51  SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA---KVDADKYS 107
           S FDSAI+    ++VDFYA WCG CK +AP ++       K  E    A   K+D D+  
Sbjct: 15  SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIE-------KFSEQYPQADFYKLDVDELG 67
Query: 108 RLASKQEIDAFPTLKIFMHG 127
            +A K E+ A PTL +F +G
Sbjct: 68  DVAQKNEVSAMPTLLLFKNG 87

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I + + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LD+   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDD---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG C+ +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +F++ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP L+E   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 46  IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
           + L ++NF  AI     +LVDF+A WCG C+ +AP L+E A   A   + + +AK++ D+
Sbjct: 3   MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA---DKVTVAKLNVDE 59
Query: 106 YSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK 137
                S+  I + PTL +F  G P +    Y P++
Sbjct: 60  NPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKE 94

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 43  GKVIELDESNF-DSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           G V  L   NF D A      + V+FYAPWCGHCK+LAP  D+      K  E IVIAK+
Sbjct: 7   GPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETY-KDHENIVIAKM 65
Query: 102 DADKYSRLASKQEIDAFPTLKIF 124
           D+      A K  + +FPTLK F
Sbjct: 66  DSTANEVEAVK--VHSFPTLKFF 86

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 46  IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
           + L ++NF  AI     +LVDF+A WCG C+ +AP L+E A   A   + + +AK++ D+
Sbjct: 3   MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA---DKVTVAKLNVDE 59
Query: 106 YSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK 137
                S+  I + PTL +F  G P +    Y P++
Sbjct: 60  NPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKE 94

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           + V+FYAPWCGHCK+LAP  D+      K  E IVIAK+D+      A K  + +FPTLK
Sbjct: 270 VFVEFYAPWCGHCKQLAPIWDKLGETY-KDHENIVIAKMDSTANEVEAVK--VHSFPTLK 326
Query: 123 IF 124
            F
Sbjct: 327 FF 328

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 46  IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
           + L ++NF  AI     +LVDF+A WCG C+ +AP L+E A   A   + + +AK++ D+
Sbjct: 3   MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA---DKVTVAKLNVDE 59
Query: 106 YSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK 137
                S+  I + PTL +F  G P +    Y P++
Sbjct: 60  NPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKE 94

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 46  IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
           + L ++NF  AI     +LVDF+A WCG C+ +AP L+E A   A   + + +AK++ D+
Sbjct: 3   MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA---DKVTVAKLNVDE 59
Query: 106 YSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK 137
                S+  I + PTL +F  G P +    Y P++
Sbjct: 60  NPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKE 94

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 46  IELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           I++ +++F +  +SS   +LVDF+A WCG CK +AP L+E   I  +    + +AK+D D
Sbjct: 10  IKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEE---IATERATDLTVAKLDVD 66
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV 149
                A   ++ + PTL +F  G P +   G +    L+R L   V
Sbjct: 67  TNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 112

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 46  IELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           I++ +++F +  +SS   +LVDF+A WCG CK +AP L+E   I  +    + +AK+D D
Sbjct: 15  IKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEE---IATERATDLTVAKLDVD 71
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV 149
                A   ++ + PTL +F  G P +   G +    L+R L   V
Sbjct: 72  TNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 117

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +A  LDE A    + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WC  CK +AP LDE A    + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVS 154
            D+    A K  I   PTL +F +G   E    +   L    LK+F+  +++
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFLDANLA 108

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           +LVDF+A WCG C+++AP L+    I A+  + I I K++ D+    A+K  + + PTL 
Sbjct: 26  VLVDFWAAWCGPCRQIAPSLEA---IAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLN 82
Query: 123 IFMHG-IPTEYYGPRKAELLVRYLKKFVA 150
           ++  G +     G +    +VR L+ F+A
Sbjct: 83  VYQGGEVAKTIVGAKPKAAIVRDLEDFIA 111

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGH-CKRLAPQLDEAAPILAKLKEPIVIAKV 101
           K+I L + +FD+ +   D  ILVDF+A WCG  CK +AP LDE   I  + +  + +AK+
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDE---IADEYQGKLTVAKL 59
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
           + D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  NIDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 104

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG  K +AP LDE   I  + +  + +AK++
Sbjct: 23  KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDE---IADEYQGKLTVAKLN 79
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 80  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 123

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG  K +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           ++++ +++FDS + S    LVDF+A WCG  K +AP L+E A   A  +    I K+D D
Sbjct: 6   IVKVTDADFDSKVES-GVQLVDFWATWCGTSKMIAPVLEELA---ADYEGKADILKLDVD 61
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK--AELLVRYL 145
           +    A+K E+ + PTL +F  G P +    + P++  AE+L ++L
Sbjct: 62  ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE   I  + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K      PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYIERGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 51  SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA---KVDADKYS 107
           S FDSAI+    ++VDFYA WCG  K +AP ++       K  E    A   K+D D+  
Sbjct: 15  SEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIE-------KFSEQYPQADFYKLDVDELG 67
Query: 108 RLASKQEIDAFPTLKIFMHG 127
            +A K E+ A PTL +F +G
Sbjct: 68  DVAQKNEVSAMPTLLLFKNG 87

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 55  SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE 114
           SA +S   +L DF+APWCG CK +AP L+E   +  ++ + + I K+D D+    A K  
Sbjct: 12  SAETSEGVVLADFWAPWCGPCKMIAPVLEE---LDQEMGDKLKIVKIDVDENQETAGKYG 68
Query: 115 IDAFPTLKIFMHGIPTEY---YGPRKA--ELLVRYL 145
           + + PTL +   G   E    + P++A  EL+ ++L
Sbjct: 69  VMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 51  SNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
           S +DSA++S D  ++VDF+A WCG CK +AP +++     A+        K+D D+ S +
Sbjct: 16  SEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEK----FAEQYSDAAFYKLDVDEVSDV 71
Query: 110 ASKQEIDAFPTLKIFMHG 127
           A K E+ + PTL  +  G
Sbjct: 72  AQKAEVSSMPTLIFYKGG 89

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           +LVDF+APWCG C+ +AP +DE   I  + K+ +   K++ D+   +AS+  I + PT+ 
Sbjct: 22  VLVDFWAPWCGPCRIIAPVVDE---IAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIM 78
Query: 123 IFMHGIPTE-YYGPRKAELLVRYLKKFV 149
           +F  G   E   G      +V+ ++K++
Sbjct: 79  VFKGGKKCETIIGAVPKATIVQTVEKYL 106

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 51  SNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
           S +DSA++S D  ++VDF+A WCG CK +AP +++     A+        K+D D+ S +
Sbjct: 9   SEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEK----FAEQYSDAAFYKLDVDEVSDV 64
Query: 110 ASKQEIDAFPTLKIFMHG 127
           A K E+ + PTL  +  G
Sbjct: 65  AQKAEVSSMPTLIFYKGG 82

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 46  IELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL-KEPIVIAKVDA 103
           I+L    F+  +     + +VDFYAPWCG C+  AP+ +    +LA++ K  +   KVD 
Sbjct: 6   IDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFE----LLARMIKGKVRAGKVDC 61
Query: 104 DKYSRLASKQEIDAFPTLKIFMH 126
             Y +   K  I A+P++K++ +
Sbjct: 62  QAYPQTCQKAGIKAYPSVKLYQY 84

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           VI LD  NFDS ++S +  +VDF+A WC  C  LAP ++E    LA+    +   K+++D
Sbjct: 1   VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEE----LAEDYPQVGFGKLNSD 56
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTE 131
           +   +A++  + + PT+  F  G P +
Sbjct: 57  ENPDIAARYGVMSLPTVIFFKDGEPVD 83

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 49  DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106
           D+++ D  ++  S   +++DF+A WCG CK ++P+L E +   A   + +V+ KVD D+ 
Sbjct: 7   DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA---DNVVVLKVDVDEC 63
Query: 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLK 146
             +A +  I + PT     +G+  E +    A+ L   +K
Sbjct: 64  EDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 103

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           D ++I L+   FD+A++S +   V+FY+P   H   LAP   E A  +  L   + I  V
Sbjct: 115 DPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL---LRIGAV 171
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVAPDVSILNSDA 160
           +      L   + ++++P+L IF  G+   +Y G R  E LV +  + V   V+ L++  
Sbjct: 172 NCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELST-- 229
Query: 161 EVSDFVENAGTFFPLFIGF 179
              +FV    T F   +G+
Sbjct: 230 --GNFVNAIETAFAAGVGW 246

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           ++++ +++FDS + S    LVDF+A  CG CK +AP L+E A   A  +    I K+D D
Sbjct: 5   IVKVTDADFDSKVES-GVQLVDFWATACGPCKMIAPVLEELA---ADYEGKADILKLDVD 60
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK--AELLVRYL 145
           +    A+K E+ + PTL +F  G P +    + P++  AE+L ++L
Sbjct: 61  ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 106

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 49  DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106
           D+++ D  ++  S   +++DF+A WCG CK ++P+L E   +  +  + +V+ KVD D+ 
Sbjct: 12  DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVE---LSTQFADNVVVLKVDVDEC 68
Query: 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLK 146
             +A +  I + PT     +G+  E +    A+ L   +K
Sbjct: 69  EDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 108

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WC   K +AP LDE A    + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
            D+    A K  I   PTL +F +G   E    +   L    LK+F+
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 16/101 (15%)
Query: 42  DGKVIELDESNFDSAISSFDY------------ILVDFYAPWCGHCKRLAPQLDEAAPIL 89
           +GKVI L ++ F + + +F+              +VDFYA WCG CK +AP LDE A   
Sbjct: 8   NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELA--- 64
Query: 90  AKLKEPIVIAKVDADKYSRLASKQEIDAFPT-LKIFMHGIP 129
            +    IVI KVD +K   LA    I + P+ L I M G P
Sbjct: 65  KEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKP 105

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 46  IELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           I++ +++F +  +SS   +LVDF+A WCG  K +AP L+E   I  +    + +AK+D D
Sbjct: 12  IKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEE---IATERATDLTVAKLDVD 68
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV 149
                A   ++ + PTL +F  G P +   G +    L+R L   V
Sbjct: 69  TNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 114

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF+APWCG CK +AP +DE A    +    I + K++ D+   +A++  I + PT+ 
Sbjct: 21  VMVDFWAPWCGPCKLIAPVIDELA---KEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVL 77
Query: 123 IFMHG 127
            F +G
Sbjct: 78  FFKNG 82

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF+APWCG CK +AP +DE A    +    I + K++ D+   +A++  I + PT+ 
Sbjct: 20  VMVDFWAPWCGPCKLIAPVIDELA---KEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVL 76
Query: 123 IFMHG 127
            F +G
Sbjct: 77  FFKNG 81

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           +++DFYA WCG CK +AP+L+E    L++    +V  KVD D+   +A   +I   PT  
Sbjct: 23  VVIDFYATWCGPCKMIAPKLEE----LSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFL 78
Query: 123 IFMHG 127
              +G
Sbjct: 79  FMKNG 83

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 55  SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE 114
           SA +S   +L DF+APWCG  K +AP L+E   +  ++ + + I K+D D+    A K  
Sbjct: 12  SAETSEGVVLADFWAPWCGPSKMIAPVLEE---LDQEMGDKLKIVKIDVDENQETAGKYG 68
Query: 115 IDAFPTLKIFMHGIPTEY---YGPRKA--ELLVRYL 145
           + + PTL +   G   E    + P++A  EL+ ++L
Sbjct: 69  VMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 51  SNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
           S +DSA++S D  ++VDF+A WCG  K +AP +++     A+        K+D D+ S +
Sbjct: 17  SEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEK----FAEQYSDAAFYKLDVDEVSDV 72
Query: 110 ASKQEIDAFPTLKIFMHG 127
           A K E+ + PTL  +  G
Sbjct: 73  AQKAEVSSMPTLIFYKGG 90

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 51  SNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
           S +DSA++S D  ++VDF+A WCG  K +AP +++     A+        K+D D+ S +
Sbjct: 9   SEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEK----FAEQYSDAAFYKLDVDEVSDV 64
Query: 110 ASKQEIDAFPTLKIFMHG 127
           A K E+ + PTL IF  G
Sbjct: 65  AQKAEVSSMPTL-IFYKG 81

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 55  SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE 114
           SA +S   +L DF+APWCG  K +AP L+E   +  ++ + + I K+D D+    A K  
Sbjct: 12  SAETSEGVVLADFWAPWCGPSKMIAPVLEE---LDQEMGDKLKIVKIDVDENQETAGKYG 68
Query: 115 IDAFPTLKIFMHG 127
           + + PTL +   G
Sbjct: 69  VMSIPTLLVLKDG 81

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 45  VIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
           VIE+ + NF+  +   D  +LVDF+APWCG C+ +AP ++E A    + +  + + KV+ 
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELA---KEYEGKVKVVKVNV 59
Query: 104 DKYSRLASKQEIDAFPTLKIFMHG 127
           D+    A++  I + PTL +F +G
Sbjct: 60  DENPNTAAQYGIRSIPTLLLFKNG 83

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121
           +L++FYAPWCGHCK+L P            K+ +VIAK+DA        + +++ FPT+
Sbjct: 28  VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKD-LVIAKMDATANDITNDQYKVEGFPTI 85

>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin Length = 123

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Query: 44  KVIELDESNFDSAISSFD-YILVDFYAPWC--------------GHCKRLAPQLDEAAPI 88
           K+I L + +FD+ +   D  ILVDF+A WC              G CK +AP LDE   I
Sbjct: 4   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDE---I 60
Query: 89  LAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKF 148
             + +  + +AK++ D+    A K  I   PTL +F +G   E    +   L    LK+F
Sbjct: 61  ADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEF 117
Query: 149 V 149
           +
Sbjct: 118 L 118

>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin Length = 118

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           +LVDF+A WCG C+RL   L    P +A+  + +   KVD DK    A    + + P L 
Sbjct: 26  VLVDFFATWCGPCQRLGQIL----PSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPAL- 80
Query: 123 IFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAE 161
                     +  +K    ++ L +FV  DVS + +D E
Sbjct: 81  ----------FFVKKEGNEIKTLDQFVGADVSRIKADIE 109

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123
           +++FYAPWC  C+ L P+ +  A     L+  + IAKVD  +   L+ +  I+A PT+  
Sbjct: 26  MIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKVDVTEQPGLSGRFIINALPTIYH 83
Query: 124 FMHGIPTEYYGPRKAELLVRYL 145
              G    Y GPR  +  + ++
Sbjct: 84  CKDGEFRRYQGPRTKKDFINFI 105

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           I+VDF+A WCG C+ +AP+++     LAK    +  AKVD D+    A+K  + A PT  
Sbjct: 22  IVVDFFAQWCGPCRNIAPKVE----ALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFV 77
Query: 123 IFMHG 127
               G
Sbjct: 78  FIKDG 82

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF+APWCG  K +AP +DE A    +    I + K++ D+   +A++  I + PT+ 
Sbjct: 21  VMVDFWAPWCGPSKLIAPVIDELA---KEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVL 77
Query: 123 IFMHG 127
            F +G
Sbjct: 78  FFKNG 82

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 38  KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV 97
           K K+   V  L+  NFD  I+    ++VDF+A WC  C  LAP ++E    LA     + 
Sbjct: 1   KEKVKEPVKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEE----LANDYPQVA 56
Query: 98  IAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
             K++ ++   +A +  I + PT+  F +G
Sbjct: 57  FGKLNTEESQDIAMRYGIMSLPTIMFFKNG 86

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK- 122
           +VDFYA WCG CK +AP L+E +   A     I I KV+ DK   LA    I + PT+  
Sbjct: 55  IVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQSIPTIWF 111
Query: 123 IFMHGIPTEYYGPRKAELLVRYLKKFV 149
           + M G P    G    E L  Y+ K +
Sbjct: 112 VPMKGEPQVNMGALSKEQLKGYIDKVL 138

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK- 122
           +VDFYA WCG CK +AP L+E +   A     I I KV+ DK   LA    I   PT+  
Sbjct: 55  IVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQGIPTIWF 111
Query: 123 IFMHGIPTEYYGPRKAELLVRYLKKFV 149
           + M G P    G    E L  Y+ K +
Sbjct: 112 VPMKGEPQVNMGALSKEQLKGYIDKVL 138

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           DG+VI       D  +      ++DF+APWCG C+  AP   E A   A+    +   KV
Sbjct: 37  DGEVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETA---AERAGKVRFVKV 93
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
           + +    L+++  I + PT+ ++ +G
Sbjct: 94  NTEAEPALSTRFRIRSIPTIXLYRNG 119

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 48  LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107
           L E NFD  I +   +LVD +A WC  C    P   + A    K K   V  +++ D+  
Sbjct: 9   LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAE---KYKGKAVFGRLNVDENQ 65
Query: 108 RLASKQEIDAFPTLKIFMHG 127
           ++A K  +   PT  IF++G
Sbjct: 66  KIADKYSVLNIPTTLIFVNG 85

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 46  IELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           + + +S+FD   + +   +LVDF+A WCG CK + P L E   I  +    + +AKV+ D
Sbjct: 5   LAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGE---IGKEFAGKVTVAKVNID 61
Query: 105 KYSRLASKQEIDAFPTLKIFMHG 127
                 +  ++ + PTL +   G
Sbjct: 62  DNPETPNAYQVRSIPTLMLVRDG 84

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF+A WCG CK +AP   E +      K   +  KVD DK    A K  I A PT  
Sbjct: 36  VVVDFFATWCGPCKTIAPLFKELSE-----KYDAIFVKVDVDKLEETARKYNISAMPTFI 90
Query: 123 IFMHG 127
              +G
Sbjct: 91  AIKNG 95

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF+A WCG CK +AP   E +      K   +  KVD DK    A K  I A PT  
Sbjct: 27  VVVDFFATWCGPCKTIAPLFKELSE-----KYDAIFVKVDVDKLEETARKYNISAMPTFI 81
Query: 123 IFMHG 127
              +G
Sbjct: 82  AIKNG 86

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 41  IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
           I    +E        A  S   ++VDF A WCG C+ +AP   +    LAK    ++  K
Sbjct: 19  IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFAD----LAKKLPNVLFLK 74
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAEL 140
           VD D+   +AS   I A PT      G I  +  G +K EL
Sbjct: 75  VDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 115

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           +++DF+A WCG CK + P  ++ +   A  K  +   KVD D+ S++A +  I A PT  
Sbjct: 36  VVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDEQSQIAQEVGIRAMPTFV 93
Query: 123 IFMHG 127
            F +G
Sbjct: 94  FFKNG 98

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 51  SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA 110
           + F + I   D +++DFYA WCG CK + P L +    L +    +   K D D+   +A
Sbjct: 21  TEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTK----LIQAYPDVRFVKCDVDESPDIA 76
Query: 111 SKQEIDAFPTLKIFMHG 127
            + E+ A PT  +   G
Sbjct: 77  KECEVTAMPTFVLGKDG 93

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF A WCG CK + P        L++    ++  +VD D    +AS+ E+ + PT +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
            F  G    E+ G  K +L
Sbjct: 79  FFKKGQKVGEFSGANKEKL 97

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF A WCG CK + P        L++    ++  +VD D    +AS+ E+ A PT +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
            F  G    E+ G  K +L
Sbjct: 79  FFKKGQKVGEFSGANKEKL 97

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF A WCG CK + P        L++    ++  +VD D    +AS+ E+   PT +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
            F  G    E+ G  K +L
Sbjct: 79  FFKKGQKVGEFSGANKEKL 97

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF A WCG CK + P        L++    ++  +VD D    +AS+ E+ + PT +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
            F  G    E+ G  K +L
Sbjct: 79  FFKKGQKVGEFSGANKEKL 97

>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 45  VIELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           ++ ++ESN    +  S    +L  F++    HC +L P L+  A   A+     ++AK+D
Sbjct: 9   IVNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLA---AQYHGQFILAKLD 65
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV 149
            D    +A++  + A PT+ +F +G P + + GP+  E +   L K +
Sbjct: 66  CDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDKVL 113

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF A WCG CK + P        L++    ++  +VD D    +AS+ E+   PT +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
            F  G    E+ G  K +L
Sbjct: 79  FFKKGQKVGEFSGANKEKL 97

>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 44  KVIELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
            ++ ++ESN    +  S    +L  F++    HC +L P L+  A   A+     ++AK+
Sbjct: 8   NIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLA---AQYNGQFILAKL 64
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAP 151
           D D    +A++  + A PT+ +F +G P + + GP+  E  +R L   V P
Sbjct: 65  DCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEE-AIRALLDXVLP 114

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF A WCG CK + P        L++    ++  +VD D    +AS+ E+   PT +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
            F  G    E+ G  K +L
Sbjct: 79  FFKKGQKVGEFSGANKEKL 97

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           +++DF A WCG C+ +AP   E     AK     V  KVD D+   +A K  ++A PT  
Sbjct: 39  VIIDFTASWCGPCRFIAPVFAE----YAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFL 94
Query: 123 IFMHGIPTE-YYGPRKAEL 140
               G   +   G RK +L
Sbjct: 95  FIKDGAEADKVVGARKDDL 113

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF A WCG CK + P        L++    ++  +VD +    +AS+ E+   PT +
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
            F  G    E+ G  K +L
Sbjct: 79  FFKKGQKVGEFSGANKEKL 97

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 50  ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
           + +F+    S   I+VDF A WC  CK +AP   E    LAK    +   KVD D+   +
Sbjct: 16  KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAE----LAKKFPNVTFLKVDVDELKAV 71
Query: 110 ASKQEIDAFPTLKIFM 125
           A +  ++A PT  IF+
Sbjct: 72  AEEWNVEAMPTF-IFL 86

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF A WCG  K + P        L++    ++  +VD D    +AS+ E+ + PT +
Sbjct: 23  VVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
            F  G    E+ G  K +L
Sbjct: 79  FFKKGQKVGEFSGANKEKL 97

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF A WCG  K + P        L++    ++  +VD D    +AS+ E+ A PT +
Sbjct: 23  VVVDFSATWCGPAKMIKPFFHS----LSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
            F  G    E+ G  K +L
Sbjct: 79  FFKKGQKVGEFSGANKEKL 97

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 46  IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
           ++++E+N     ++   +++DF A WCG C+ +AP   +    LAK     V  KVD D+
Sbjct: 25  MQIEEAN-----TAKKLVVIDFTASWCGPCRIMAPVFAD----LAKKFPNAVFLKVDVDE 75
Query: 106 YSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVR 143
              +A +  ++A PT      G +     G  K EL  +
Sbjct: 76  LKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAK 114

>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin Length = 104

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 48  LDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106
           L +S+F   +    D I++ F   WC  CK++ P  +E A   ++++  I  A +DA+  
Sbjct: 4   LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMA---SQMEGDIRFAYMDAEDA 60
Query: 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRY 144
            +  ++  I   P+L +F+ G+  E +     +  +RY
Sbjct: 61  EKTMAELNIRTLPSLALFVDGMIREVFSGTMNKSDLRY 98

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF A WCG CK + P        L++    ++  +VD D    +A K  I   PTL 
Sbjct: 23  VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLL 78
Query: 123 IFMHGIPTEYYGPRKAELLVRYLKKFV 149
           +F +G   E    +   L    LK+F+
Sbjct: 79  LFKNG---EVAATKVGALSKGQLKEFL 102

>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like Hypothetical Protein Q4dv70 Length = 127

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 43  GKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPI--VIA 99
            +V+EL +  FDS +   +  + V +Y PW  H        D+ +   ++ +  +  V A
Sbjct: 15  SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAA 74
Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMH---GIPTEYYGPRKAELL 141
           ++D +KY  +  +  +  FPT++ +       P EY G R   L+
Sbjct: 75  RIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLV 119

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++VDF A WCG  K + P        L++    ++  +VD D    +AS+ E+ + PT +
Sbjct: 34  VVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQ 89
Query: 123 IFMHGIPT-EYYGPRKAEL 140
            F  G    E+ G  K +L
Sbjct: 90  FFKKGQKVGEFSGANKEKL 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	8e-64
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	2e-59
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	8e-58
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	3e-52
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	7e-51
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	6e-37
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-50
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	4e-28
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	4e-50
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	1e-23
1mek_A	120	Protein disulfide isomerase; electron transport, r	6e-48
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	8e-45
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	7e-44
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	4e-43
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	1e-42
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	1e-42
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	2e-36
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	3e-36
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	2e-35
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-33
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	8e-33
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	7e-25
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	8e-16
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-33
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	4e-31
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	6e-31
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	2e-30
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	7e-30
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	7e-23
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	4e-12
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	9e-10
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	2e-21
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	3e-21
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	4e-20
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	3e-19
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	3e-19
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	8e-19
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	1e-18
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	2e-18
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	2e-18
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	3e-18
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	3e-18
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	5e-18
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	5e-18
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	6e-18
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	1e-17
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	1e-17
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	2e-17
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	2e-17
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	3e-17
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	3e-17
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	5e-17
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	8e-17
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	8e-17
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	8e-17
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	8e-17
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	1e-16
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	1e-16
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	1e-16
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-16
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	1e-16
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	2e-16
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	2e-16
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	2e-16
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	2e-16
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	2e-16
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	3e-16
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	4e-16
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	4e-16
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	4e-16
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	5e-16
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	6e-16
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	6e-16
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	9e-16
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	1e-15
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	1e-15
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	1e-15
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	1e-15
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	2e-15
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	2e-15
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	2e-15
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	2e-15
2kuc_A	130	Putative disulphide-isomerase; structural genomics	2e-15
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	2e-15
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	2e-15
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	3e-15
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	4e-15
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	5e-15
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	5e-15
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	9e-15
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	1e-14
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	2e-13
2l57_A	126	Uncharacterized protein; structural genomics, unkn	2e-14
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	1e-13
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	2e-13
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	2e-13
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	3e-13
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	2e-12
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	2e-12
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	7e-11
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	5e-10
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	3e-09
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	1e-07
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	1e-07
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	7e-07
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	7e-07
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	2e-06
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	2e-06
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	1e-05
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	1e-05
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	2e-05
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	2e-05
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	6e-05
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	6e-05
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	8e-05
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	8e-05
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	9e-05
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	2e-04
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	2e-04
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	4e-04
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	5e-04
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	7e-04

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  207 bits (527), Expect = 8e-64
 Identities = 58/316 (18%), Positives = 122/316 (38%), Gaps = 28/316 (8%)

Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL---KEPIVI 98
             ++  LD  N D  +++ D  LV+FYA WC   + L P  +EA+ ++ +    +  +V 
Sbjct: 4   GSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVF 63

Query: 99  AKVDADKYSRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYLKKFVAPDVSIL 156
           A+VD D++S +A +  I  +PTLK+F +G  +  EY G R  + L  Y+++  +  +  +
Sbjct: 64  ARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEI 123

Query: 157 NSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFD 216
              AE++    +       F                   + +  VA    +D   L  F 
Sbjct: 124 RDLAEITTLDRSKRNIIGYFEQKD-----------SDNYRVFERVANILHDDCAFLSAFG 172

Query: 217 KV--------PALVALQPSYNEHNIFY--GPFDEEFLEEFIKQNFLPLSVPINQDTLNLL 266
            V          ++   P ++  ++ Y     + +    +I+   +PL   I  +    L
Sbjct: 173 DVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEEL 232

Query: 267 KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGIKQFADFADTFEANKK 325
            ++    ++     E  E  +     +     + +  + F +    +F       +    
Sbjct: 233 TEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQ-KTP 291

Query: 326 SKLPKMVVWDGNENYL 341
           +  P + +      Y+
Sbjct: 292 ADCPVIAIDSFRHMYV 307

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  195 bits (496), Expect = 2e-59
 Identities = 54/322 (16%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 42  DGK--VIELDESNFDSAISSFDYILVDFYAPWCGHCKR------LAPQLDEAAPILAKLK 93
           DG   VI ++  N+ +    ++ + + ++ P                 L+ AA +L    
Sbjct: 10  DGVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED-- 67

Query: 94  EPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDV 153
           + +    VD++K + +A K  +    ++ +F      EY G   A+ LV +L   +   V
Sbjct: 68  KGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVLEDPV 127

Query: 154 SILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLY 213
            ++  + E+  F           IG+  ++            KA+   A++F        
Sbjct: 128 ELIEGERELQAFENIED--EIKLIGYFKNKD-------SEHYKAFKEAAEEFHPYIPFFA 178

Query: 214 DFD---------KVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQNFLPLSVPINQDTL 263
            FD         K+  +   +    E       P  EE +  F++++       +  +++
Sbjct: 179 TFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESM 238

Query: 264 N-LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADT 319
               +DD   I +    +E +    + +  LK+ A  N +   L   ++    F      
Sbjct: 239 YETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPY 298

Query: 320 FEANKKSKL--PKMVVWDGNEN 339
           +E      L  P++ V +  + 
Sbjct: 299 WEKTFDIDLSAPQIGVVNVTDA 320

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score =  190 bits (484), Expect = 8e-58
 Identities = 70/335 (20%), Positives = 119/335 (35%), Gaps = 37/335 (11%)

Query: 30  GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL 89
           GL+           +V+ L E NF   +  +D +L  +Y       K    Q      +L
Sbjct: 1   GLNFPTYDG---KDRVVSLTEKNFKQVLKKYD-VLCLYYHESVSSDKVAQKQFQLKEIVL 56

Query: 90  AKL-----KEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRY 144
             +      + I    VDA K ++LA K   D   +L +       E+ G   A++LV +
Sbjct: 57  ELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDGEFAADVLVEF 116

Query: 145 LKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKD 204
           L   +   V I+NS  EV  F           IGF   E            KA+   A+ 
Sbjct: 117 LLDLIEDPVEIINSKLEVQAFERIEDQ--IKLIGFFKSEE-------SEYYKAFEEAAEH 167

Query: 205 FSEDTMVLYDFD---------KVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQNFLPL 254
           F         FD         K+  +   +P  +E       P+ EE L EF+K++  P 
Sbjct: 168 FQPYIKFFATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPT 227

Query: 255 SVPINQDTLN-LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGI 310
              +  + +    +DD   I +    + ++    + +  LK  A  N +   L   ++  
Sbjct: 228 LRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDP 287

Query: 311 KQFADFADTFEAN-----KKSKLPKMVVWDGNENY 340
             F      +E        K ++  + V D +  +
Sbjct: 288 DDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVW 322

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  169 bits (429), Expect = 3e-52
 Identities = 47/132 (35%), Positives = 76/132 (57%)

Query: 30  GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL 89
           G S +++ + K +  V  L++ NFD+ ++  D +L++FYAPWCGHCK+ AP+ ++ A  L
Sbjct: 4   GSSGDDDLEVKEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTL 63

Query: 90  AKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
                PI +AK+DA   S LASK ++  +PT+KI   G   +Y G R  E +V  +++  
Sbjct: 64  KDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKGQAVDYDGSRTQEEIVAKVREVS 123

Query: 150 APDVSILNSDAE 161
            PD +       
Sbjct: 124 QPDWTPPPEVTS 135

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  169 bits (429), Expect = 7e-51
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 25/244 (10%)

Query: 31  LSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILA 90
           L SE++ + K +  V+ L+++NFD+ ++  D +L++FYAPWCGHCK+ AP+ ++ A IL 
Sbjct: 3   LGSEDDLEVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILK 62

Query: 91  KLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVA 150
               PI +AK+DA   S LAS+ ++  +PT+KI   G   +Y G R  E +V  +++   
Sbjct: 63  DKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQ 122

Query: 151 PDVSILNSDAEV---SDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSE 207
           PD +       V    +F E       + + F            K     +   AK+ S+
Sbjct: 123 PDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCG----HCKKLAPEYEKAAKELSK 178

Query: 208 DTMVL----------------YDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 251
            +  +                +D    P L   +        + GP ++  + +++ +  
Sbjct: 179 RSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG--RPYDYNGPREKYGIVDYMIEQS 236

Query: 252 LPLS 255
              +
Sbjct: 237 GAAA 240

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  132 bits (334), Expect = 6e-37
 Identities = 49/120 (40%), Positives = 71/120 (59%)

Query: 35  EETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE 94
           +          + L + NFD  ++  D ILV+FYAPWCGHCK+LAP+ ++AA  L+K   
Sbjct: 122 QPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSP 181

Query: 95  PIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVS 154
           PI +AKVDA   + LA + ++  +PTLKIF  G P +Y GPR+   +V Y+ +      S
Sbjct: 182 PIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQSGAAAS 241

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  175 bits (443), Expect = 2e-50
 Identities = 73/318 (22%), Positives = 131/318 (41%), Gaps = 28/318 (8%)

Query: 34  EEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK 93
           ++E     D  V++L   +F+  I S D +L +F+APWCGHCK +AP+  +AA  L   +
Sbjct: 5   QQEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLV--E 62

Query: 94  EPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI---PTEYYGPRKAELLVRYLKKFVA 150
           + I +A++D  +   L  +  I  FP+LKIF +       +Y GPR AE +V+++ K   
Sbjct: 63  KNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ 122

Query: 151 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTM 210
           P V+++              TF    I          N         ++++A     D  
Sbjct: 123 PAVAVVADL----PAYLANETFVTPVIVQSGKIDADFN-------ATFYSMANKHFNDYD 171

Query: 211 VLYDFDKV---PALVALQPSYNEHNIFYGP----FDEEFLEEFIKQNFLPLSVPINQDTL 263
            +   +        + L  + +E  ++ G      D +  E++++   LP    I+    
Sbjct: 172 FVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVF 231

Query: 264 NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELV-FCYVGIKQFADFADTFEA 322
               +    +      D  EE+ ++        A  NR L+ F  +  ++F   A     
Sbjct: 232 AQYVESGLPLGYLFYND--EEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNL-- 287

Query: 323 NKKSKLPKMVVWDGNENY 340
           N K + P   + D  E+ 
Sbjct: 288 NMKEQFPLFAIHDMTEDL 305

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  113 bits (284), Expect = 4e-28
 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 42  DGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
           D  V +L   N D  +      +LV +YAPWCGHCKRLAP   E A   A     ++IAK
Sbjct: 357 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAK 416

Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGI---PTEYYGPRKAELLVRYLKKFVAPDVSILN 157
           +D  +         I+ +PT+ ++  G       Y G R  + L  ++K+    DV    
Sbjct: 417 LDHTEND--VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKA 474

Query: 158 SDAEVSDFVE 167
              E  +   
Sbjct: 475 LYEEAQEKAA 484

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  173 bits (440), Expect = 4e-50
 Identities = 77/309 (24%), Positives = 132/309 (42%), Gaps = 19/309 (6%)

Query: 45  VIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           V+EL + NF+S IS   S   +LV+F+APWCGH KRLAP+ + AA    +LK  + +AKV
Sbjct: 3   VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAA---TRLKGIVPLAKV 59

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGI-PTEYYGPRKAELLVRYLKKFVAPDVSILNSDA 160
           D    +   +K  +  +PTLKIF  G     Y GPR A+ +V +LKK   P    L ++ 
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEE 119

Query: 161 EVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPA 220
           E   F+ +       F      E+    L      +  +  A    E  +  YD +    
Sbjct: 120 EFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEGI 179

Query: 221 LVA----LQPSYNEHNIFY--GPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIV 274
           ++     L   + +  + Y         +++FI++N   +   + +D  +L++     I 
Sbjct: 180 ILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIA 239

Query: 275 LAIVEDE-----TEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFE-ANKKSKL 328
              V+ E     +     +++   K    A  +L F     K F+     F   +   ++
Sbjct: 240 YYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEI 299

Query: 329 PKMVVWDGN 337
           P + +    
Sbjct: 300 PVVAIRTAK 308

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  100 bits (250), Expect = 1e-23
 Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 35  EETKFKIDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK 93
           E      DG V  +   NFD  + +    +L++FYAPWCGHCK L P+  E    L+K  
Sbjct: 344 EPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSK-D 402

Query: 94  EPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVA 150
             IVIAK+DA     + S  E+  FPT+          P +Y G R+    + YL++   
Sbjct: 403 PNIVIAKMDATAND-VPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREAT 461

Query: 151 PDVSILNSDAEVSDFVE 167
               I     +     +
Sbjct: 462 NPPVIQEEKPKKKKKAQ 478

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  157 bits (398), Expect = 6e-48
 Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 3/113 (2%)

Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           +  V+ L +SNF  A+++  Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKV
Sbjct: 6   EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAP 151
           DA + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P
Sbjct: 66  DATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP 118

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  148 bits (377), Expect = 8e-45
 Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 2/107 (1%)

Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
              V+ L E+NFD  I+      + FYAPWCGHCK LAP  +E +         + IA+V
Sbjct: 4   GSTVLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 62

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKK 147
           D      + SK  +  +PTL +F  G   +E+ G R  + L R++  
Sbjct: 63  DCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  147 bits (372), Expect = 7e-44
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 4/120 (3%)

Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
            G V  + + N+   +      +++FYAPWC  C+ L P+ +  A     L+  + IAKV
Sbjct: 6   SGNVRVITDENWRELLE--GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKV 61

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAE 161
           D  +   L+ +  I+A PT+     G    Y GPR  +  + ++       +  ++S   
Sbjct: 62  DVTEQPGLSGRFIINALPTIYHCKDGEFRRYQGPRTKKDFINFISDKEWKSIEPVSSWFS 121

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  145 bits (367), Expect = 4e-43
 Identities = 48/126 (38%), Positives = 64/126 (50%), Gaps = 6/126 (4%)

Query: 42  DGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE-PIVIA 99
            G VIEL + +FD  +  S D  +V+FYAPWCGHCK L P+   AA  + +  +  + +A
Sbjct: 6   SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLA 65

Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKKFV---APDVSI 155
            VDA     LAS+  I  FPT+KIF  G  P +Y G R    +V          AP   +
Sbjct: 66  AVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPEL 125

Query: 156 LNSDAE 161
           L S   
Sbjct: 126 LESGPS 131

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score =  149 bits (377), Expect = 1e-42
 Identities = 57/279 (20%), Positives = 98/279 (35%), Gaps = 49/279 (17%)

Query: 42  DGKVIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
           D  + EL   +FD AI + +Y  LV+FYAPWCGHCK+L+    +AA  L      +    
Sbjct: 16  DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDG-VVQVAAVN 74

Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHG------------------IPTEYYGPRKAELLV 142
            D +K   L +K +++ FPTL +F                         Y G R    +V
Sbjct: 75  CDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIV 134

Query: 143 RYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGF-GLDESVMSNLALKYKKKAWFA- 200
            +    +   V        +   +  +     +          V  ++AL +  K  F  
Sbjct: 135 DFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGKFDFYS 194

Query: 201 ---------------------VAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-F 238
                                + K   +        DK   LV      ++   + G   
Sbjct: 195 ISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDK-SKLVVFDADKDKFWEYEGNSI 253

Query: 239 DEEFLEEFIKQNF--LPLSVPINQDTLNL--LKDDKRKI 273
           ++  + +F++  F   P   P ++ +  +  LK  K+ I
Sbjct: 254 NKNDISKFLRDTFSITPNEGPFSRRSEYIAYLKTGKKPI 292

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  144 bits (364), Expect = 1e-42
 Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 30  GLSSEEETKFKIDGKVIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPI 88
           G S      +     VIEL  SNF+  +   D + LV+FYAPWCGHC+RL P+  +AA  
Sbjct: 4   GSSGAVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAA-- 61

Query: 89  LAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYLK 146
              LK+ + +  V+ADK+  L  +  +  FPT+KIF      P +Y G R  E +V    
Sbjct: 62  -TALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAAL 120

Query: 147 KFVAPDVS 154
             +    S
Sbjct: 121 SALRSGPS 128

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  127 bits (322), Expect = 2e-36
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 31  LSSEEETKFKIDGKVIELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL 89
           ++S      +   +V+EL +  FDS  +     + V +Y PW  H        D+ +   
Sbjct: 3   MASNVANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQ 62

Query: 90  AKLK--EPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRY 144
           ++ +     V A++D +KY  +  +  +  FPT++ +       P EY G R   L+  +
Sbjct: 63  SQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSF 122

Query: 145 LKK 147
           + +
Sbjct: 123 VFQ 125

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  130 bits (329), Expect = 3e-36
 Identities = 37/227 (16%), Positives = 71/227 (31%), Gaps = 19/227 (8%)

Query: 42  DGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
              +  L       A+  S     V+F+A WCGHC   AP     A  +   +  + +A 
Sbjct: 11  SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAA 70

Query: 101 VDADKYS--RLASKQEIDAFPTLKIFMHG-----IPTEYYGPRKAELLVRYLKKFVAPDV 153
           +D  + +   +     I  FPT++ F                   + L   L   +    
Sbjct: 71  LDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHH 130

Query: 154 SILNSDAEVSDFV--ENAGTFF------PLFIGFGLDES-VMSNLALKYKKKAWFAVAKD 204
                     +    E    FF       L + F    S +   +AL   +    AV + 
Sbjct: 131 DTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLSQHKGVAVRRV 190

Query: 205 FSEDTMVL--YDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 249
            + +  V+  +     P+   L  + +   +        F   ++++
Sbjct: 191 LNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQR 237

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score =  134 bits (338), Expect = 2e-35
 Identities = 37/274 (13%), Positives = 73/274 (26%), Gaps = 19/274 (6%)

Query: 33  SEEETKFKIDGKVIELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK 91
           S     +     +  LD  +    +  S     V+F+A WCGH    AP   E A  +  
Sbjct: 2   SHMSVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKD 61

Query: 92  LKEPIVIAKVDADKYS--RLASKQEIDAFPTLKIFMHGI-----PTEYYGPRKAELLVRY 144
            +  + +A +D  + +   +  +  I  FPT++ F          T        + L   
Sbjct: 62  WRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMR 121

Query: 145 LKKFVA----------PDVSILNSDAEVSDFVENAGTF-FPLFIGFGLDESVMSNLALKY 193
           L   +           P +     +     F  N   +   +F            L L  
Sbjct: 122 LIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLSQ 181

Query: 194 KKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP 253
                     +   D +  +     P+   L  + +   +        F   +++     
Sbjct: 182 YHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGL 241

Query: 254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQ 287
                      +  D     V    +      + 
Sbjct: 242 TRDAPPTTATPVTADKIAPTVWKFADRSKIYMAD 275

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  130 bits (328), Expect = 2e-33
 Identities = 54/312 (17%), Positives = 94/312 (30%), Gaps = 17/312 (5%)

Query: 39  FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVI 98
           +  D ++I L+   FD+A++S +   V+FY+P   H   LAP   E A    ++   + I
Sbjct: 112 YDDDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFA---KEVDGLLRI 168

Query: 99  AKVDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKKFVAPDVSILN 157
             V+      L   + ++++P+L IF  G    +Y G R  E LV +  + V   V+ L+
Sbjct: 169 GAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELS 228

Query: 158 S---DAEVSDFVENAGTFFPLFIGFGLD-ESVMSNLALKYKKKAWFAVAK-DFSEDTMVL 212
           +      +         +   F   G D  +  + L L         V   D      + 
Sbjct: 229 TGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLC 288

Query: 213 YDFDKVPALVALQPSYNEHNIFYG----PFDEEFLEEFIKQNFLPLSVPINQDTLNLLKD 268
              D   +  A  P     N          +    +E   +    L          L   
Sbjct: 289 KSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDR 348

Query: 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL 328
                 L        E +             N  +                    +    
Sbjct: 349 LAHHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQ---- 404

Query: 329 PKMVVWDGNENY 340
           P + V+ G    
Sbjct: 405 PSLAVFKGQGTK 416

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  128 bits (323), Expect = 8e-33
 Identities = 47/284 (16%), Positives = 87/284 (30%), Gaps = 19/284 (6%)

Query: 34  EEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK 93
               K  ++  V  L   NF +  S  +  LVDF+APW    + L P+L +A+     L 
Sbjct: 431 LAFAKESVNSHVTTLGPQNFPA--SDKEPWLVDFFAPWSPPSRALLPELRKAS---TLLY 485

Query: 94  EPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDV 153
             + +  +D   +  L +   I A+PT  +F      EY G   AE ++ +++    P V
Sbjct: 486 GQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYEGHHSAEQILEFIEDLRNPSV 545

Query: 154 SILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFA-VAKD 204
             L      ++ V+         + F                 +A           V   
Sbjct: 546 VSLTPS-TFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCG 604

Query: 205 FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPF----DEEFLEEFIKQNFLPLSVPINQ 260
                    +  + P +       ++   ++       D   L  +        S+ +  
Sbjct: 605 QYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTP 664

Query: 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELV 304
            T N      +   +          SQ      +  A   +  V
Sbjct: 665 QTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKV 708

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  105 bits (262), Expect = 7e-25
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 40  KIDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVI 98
            +    I+L    F+  +     + +VDFYAPW G  +  AP+ +  A     +K  +  
Sbjct: 654 FLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLA---RMIKGKVRA 710

Query: 99  AKVDADKYSRLASKQEIDAFPTLKIFMHG-----IPTEYYGPRKAELLVRYLKKFVAPDV 153
            KVD   Y +   K  I A+P++K++ +      I  E    R A+ +   +   +    
Sbjct: 711 GKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQ 770

Query: 154 SILNSDAE 161
           S +  + +
Sbjct: 771 SQVKRNKD 778

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 77.9 bits (191), Expect = 8e-16
 Identities = 45/310 (14%), Positives = 93/310 (30%), Gaps = 26/310 (8%)

Query: 27  TGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA 86
                   +E   +I   + + +  + +       +     +  +  +     P+L +  
Sbjct: 316 LFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENANDPELKKLK 375

Query: 87  PILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYY---GPRKAELLVR 143
            +L      I + + D      + S   +   P+L +F      EY    G +    ++ 
Sbjct: 376 TLLKNEH--IQVVRFDCSSAPGICSDLYVF-QPSLAVFKGQGTKEYEIHHGKKILYDILA 432

Query: 144 YLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK 195
           + K+ V   V+ L       +F  +     P  + F              +   +     
Sbjct: 433 FAKESVNSHVTTLGPQ----NFPASDKE--PWLVDFFAPWSPPSRALLPELRKASTLLYG 486

Query: 196 KAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPL 254
           +           E    +Y+    P  V      +  + + G    E + EFI+    P 
Sbjct: 487 QLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQ--SSIHEYEGHHSAEQILEFIEDLRNPS 544

Query: 255 SVPINQDTLNLLKDDKRKIVLAIVE--DETEEKSQKLVTTLKAAASANRELV-FCYVGIK 311
            V +   T N L   ++   + +V+        SQ L+   K  A     L+    V   
Sbjct: 545 VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCG 604

Query: 312 QFADFADTFE 321
           Q+  F     
Sbjct: 605 QYHSFCTQEN 614

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score =  119 bits (300), Expect = 2e-33
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 44  KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
             I+L    F+  +     + +VDFYAPWCG C+  AP+ +  A     +K  +   KVD
Sbjct: 4   ASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLA---RMIKGKVRAGKVD 60

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG-----IPTEYYGPRKAELLVRYLKKFVAPDVSILN 157
              Y +   K  I A+P++K++ +      I  E    R A+ +   +   +    S + 
Sbjct: 61  CQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVK 120

Query: 158 SD 159
            +
Sbjct: 121 RN 122

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  113 bits (285), Expect = 4e-31
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 9/119 (7%)

Query: 42  DGKVIELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILA--KLKEPIVI 98
           +G V  +   N++   +     +L++FYAPWCGHCK LAP+ +E   + A  + K+ +VI
Sbjct: 6   EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVI 65

Query: 99  AKVDADKYSRLASKQEIDAFPTLKIFMHGI---PTEYYGPRKAELLVRYLKKFVAPDVS 154
           AKVDA          EI  FPT+K++  G    P  Y G R  E L++++ +      +
Sbjct: 66  AKVDATAND---VPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA 121

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  113 bits (284), Expect = 6e-31
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 42  DGKVIELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
            G V  +    FD+  +     +L++FYAPWCGHCK+L P            ++ +VIAK
Sbjct: 6   SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKG-QKDLVIAK 64

Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYY-GPRKAELLVRYLKK 147
           +DA        + +++ FPT+     G    P ++  G R  E L +++ +
Sbjct: 65  MDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDE 115

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  115 bits (289), Expect = 2e-30
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
            + LD   F   I    ++LV F   +    K+   +    A   A   + +++A+V   
Sbjct: 7   ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDD-LLVAEVGIS 63

Query: 105 KY-----SRLASKQEIDA--FPTLKIFMHG---IPTEYYGPRKAELLVRYLKK---FVAP 151
            Y       L+ K ++D   +P   +F  G    P  Y G  K   + R+LK    ++  
Sbjct: 64  DYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGVYLGM 123

Query: 152 DVSILNSDAEVSDFVENAG 170
              +   DA   +F+  +G
Sbjct: 124 PGCLPVYDALAGEFIRASG 142

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score =  118 bits (296), Expect = 7e-30
 Identities = 39/269 (14%), Positives = 73/269 (27%), Gaps = 17/269 (6%)

Query: 32  SSEEETKFKIDGKVIELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL 89
            S     F +D  V++L   +F      +     +V FY   CG C+R A    + A  L
Sbjct: 12  GSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGL 71

Query: 90  AK-----LKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELL 141
                    +    A V+      L  K +I+  P L  F         E  G    E +
Sbjct: 72  KVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHV 131

Query: 142 VRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAV 201
                     ++      +EV   V              +D       + +   K   + 
Sbjct: 132 AFENSHLEVDELE-----SEVRRLVNKHMVVDDSLKERCIDMHFKLYTSKEELVKRSVSS 186

Query: 202 AKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEF--LEEFIKQNFLPLSVPIN 259
             +          +    A       + + ++      E    LE+F+      L     
Sbjct: 187 TDESGRFVETTELYATDIAGAFFSAMHYDVSLVGTEPRERLTALEDFVLLVKDSLPSIGA 246

Query: 260 QDTLNLLKDDKRKIVLAIVEDETEEKSQK 288
              ++ L+    +    +   +       
Sbjct: 247 DGVVSALESITAERPFTVASWQDAVVKSG 275

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 97.4 bits (242), Expect = 7e-23
 Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 7/121 (5%)

Query: 31  LSSEEETKFKIDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL 89
           L S+E  +      V  L   NF+         + V+FYAPWCGHCK+LAP  D+     
Sbjct: 237 LMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETY 296

Query: 90  AKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLK 146
            K  E IVIAK+D+          ++ +FPTLK F         +Y G R  +   ++L+
Sbjct: 297 -KDHENIVIAKMDSTA--NEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE 353

Query: 147 K 147
            
Sbjct: 354 S 354

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 65.5 bits (159), Expect = 4e-12
 Identities = 34/215 (15%), Positives = 65/215 (30%), Gaps = 21/215 (9%)

Query: 136 RKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKK 195
             +  L    +   +   + L   A     VE++       IGF  D             
Sbjct: 2   HHSSGLEVLFQGPGSEFATTLPDGAAAESLVESSEVAV---IGFFKDVE-------SDSA 51

Query: 196 KAWFAVAKDFSEDTMVLYDFDKV--------PALVALQPSYNEHNIFYGPFDEEFLEEFI 247
           K +   A+   +    +     V          +V  +      N F G   +E L +FI
Sbjct: 52  KQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFI 111

Query: 248 KQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELV 304
           K N LPL +   + T   +   + K  + +   ++       ++  K AA + +     +
Sbjct: 112 KHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFI 171

Query: 305 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN 339
           F            + F   K+      ++    E 
Sbjct: 172 FIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEM 206

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 58.5 bits (141), Expect = 9e-10
 Identities = 33/240 (13%), Positives = 60/240 (25%), Gaps = 33/240 (13%)

Query: 43  GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
             VIE  E              ++ F                 AA    K K   +    
Sbjct: 117 PLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF-KGKILFIFIDS 175

Query: 102 DADKYSRLASKQEIDA--FPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSD 159
           D     R+     +     P +++         Y P   EL    + +F    +      
Sbjct: 176 DHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKP 235

Query: 160 AEVSDFVENAGTFFPLFI--GFGLDESVMSN-------------------------LALK 192
             +S  +       P+ +  G   ++                              L   
Sbjct: 236 HLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGET 295

Query: 193 YKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQN 250
           YK      +AK D + + +        P L     S +   I Y G    +  ++F++  
Sbjct: 296 YKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESG 355

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 88.2 bits (219), Expect = 2e-21
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 43  GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
             V+E DE  F   ++     LVDF+APWCG C+ ++P L+E A         + + KV+
Sbjct: 33  PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELA---RDHAGRLKVVKVN 89

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            D++  LA++  + + PTL +F  G
Sbjct: 90  VDEHPGLAARYGVRSVPTLVLFRRG 114

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 87.9 bits (218), Expect = 3e-21
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           DG+VI       D  +     +++DF+APWCG C+  AP   E A   A+    +   KV
Sbjct: 37  DGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETA---AERAGKVRFVKV 93

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
           + +    L+++  I + PT+ ++ +G
Sbjct: 94  NTEAEPALSTRFRIRSIPTIMLYRNG 119

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 84.4 bits (209), Expect = 4e-20
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 34  EEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA----PIL 89
           +E      DG++I +    F   +      ++  Y+  C HC R  PQL +A+      +
Sbjct: 7   KEGLAVLEDGRLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVDVPI 64

Query: 90  AKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
                  +I + +        +K  ++  PTL  +  G
Sbjct: 65  VMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEG 102

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 82.5 bits (204), Expect = 3e-19
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 41  IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
           I GKV  +D +    A      +LVDF+APWCG C+++APQ   AA   A L   + +AK
Sbjct: 45  ITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAA---ATLAGQVRLAK 101

Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHG 127
           +D   +  +A +  I   P   +F  G
Sbjct: 102 IDTQAHPAVAGRHRIQGIPAFILFHKG 128

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 81.2 bits (201), Expect = 3e-19
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 44  KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
            + ++      +        +V F+   C HCK +   LD+           + I+ VD+
Sbjct: 3   AIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDK----FGARAPQVAISSVDS 58

Query: 104 DKYSRLASKQEIDAFPTLKIFMHGIPTE 131
           +    L  +   +  PTL     G   +
Sbjct: 59  EARPELMKELGFERVPTLVFIRDGKVAK 86

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 79.7 bits (197), Expect = 8e-19
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
           VI LD  NFDS ++S +  +VDF+A WC  C  LAP ++E A    ++       K+++D
Sbjct: 1   VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVG----FGKLNSD 56

Query: 105 KYSRLASKQEIDAFPTLKIFMHG 127
           +   +A++  + + PT+  F  G
Sbjct: 57  ENPDIAARYGVMSLPTVIFFKDG 79

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 39  FKIDGKVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV 97
                 V +    S FDSAI+    ++VDFYA WCG CK +AP +++     ++      
Sbjct: 2   HHHHHMVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEK----FSEQYPQAD 57

Query: 98  IAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
             K+D D+   +A K E+ A PTL +F +G
Sbjct: 58  FYKLDVDELGDVAQKNEVSAMPTLLLFKNG 87

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 32  SSEEETKFKIDGKVIEL-DESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPI 88
           S  E   F+     IEL +  + +   SS     I++ F A WC  C ++          
Sbjct: 9   SGRENLYFQGQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN- 67

Query: 89  LAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
                  + +  +D D + +L  +  I A PT + + + 
Sbjct: 68  ----YYYVTLVDIDVDIHPKLNDQHNIKALPTFEFYFNL 102

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 79.0 bits (195), Expect = 2e-18
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 43  GKVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
             V+++     F + +S     +  F A WCG CK +   +++    +A     +  AKV
Sbjct: 19  PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEK----IAYEFPTVKFAKV 74

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
           DAD  S + SK  +   PT  I   G
Sbjct: 75  DADNNSEIVSKCRVLQLPTFIIARSG 100

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 43  GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
            K IE+ + NFD  +     +LVDF+A WC  C+ +AP L+E A    + +  +++AK+D
Sbjct: 1   AKPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIA---KEYEGKLLVAKLD 57

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            D+  + A +  + + PT+ +F  G
Sbjct: 58  VDENPKTAMRYRVMSIPTVILFKDG 82

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 43  GKVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
             + +L + + F + I   D +++DFYA WCG CK + P L +    L +    +   K 
Sbjct: 12  TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTK----LIQAYPDVRFVKC 67

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
           D D+   +A + E+ A PT  +   G
Sbjct: 68  DVDESPDIAKECEVTAMPTFVLGKDG 93

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 78.2 bits (193), Expect = 5e-18
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 8/99 (8%)

Query: 32  SSEEETKFKIDGKVIEL-DESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPI 88
           S E  ++  I  ++IEL  + + +S +       ++VDF+A WCG CK +AP   E    
Sbjct: 2   SPEFTSQLVIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKE---- 57

Query: 89  LAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
           L++ K   +  KVD DK    A K  I A PT     +G
Sbjct: 58  LSE-KYDAIFVKVDVDKLEETARKYNISAMPTFIAIKNG 95

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 77.8 bits (192), Expect = 5e-18
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 40  KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA 99
           K +   + L E NFD  I +   +LVD +A WC  C    P   + A    K K   V  
Sbjct: 1   KKEDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVA---EKYKGKAVFG 57

Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMHG 127
           +++ D+  ++A K  +   PT  IF++G
Sbjct: 58  RLNVDENQKIADKYSVLNIPTTLIFVNG 85

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 81.3 bits (200), Expect = 6e-18
 Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 17/142 (11%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
            ++LDE +F+  +  F Y +V F                  +    K  + ++IA V   
Sbjct: 18  CVDLDELSFEKTVERFPYSVVKFDIASP--YGEKHEAFTAFSKSAHKATKDLLIATVGVK 75

Query: 105 KY-----SRLASKQEIDA--FPTLKIFMHG----IPTEYYGPRKAELLVRYLKK----FV 149
            Y       L  + ++D   FP++ +F       +    +     + L  ++      ++
Sbjct: 76  DYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPLYI 135

Query: 150 APDVSILNSDAEVSDFVENAGT 171
             D  I   +  + ++      
Sbjct: 136 GRDGCIKEFNEVLKNYANIPDA 157

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 4/79 (5%)

Query: 49  DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR 108
            ++ FDS IS  + ++VDF+A WCG CKR+AP  +E     +K    +V  KVD D+ S 
Sbjct: 15  SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEE----CSKTYTKMVFIKVDVDEVSE 70

Query: 109 LASKQEIDAFPTLKIFMHG 127
           +  K+ I + PT K++ +G
Sbjct: 71  VTEKENITSMPTFKVYKNG 89

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 43  GKVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           G V  +     F         +++DF+A WCG CK + P  ++ +   A  K  +   KV
Sbjct: 15  GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKV 72

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
           D D+ S++A +  I A PT   F +G
Sbjct: 73  DVDEQSQIAQEVGIRAMPTFVFFKNG 98

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 76.3 bits (188), Expect = 2e-17
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 31  LSSEEETKFKIDGKVIELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPI 88
           L+   +    I GKV E+++  F   +  +    +++D +  WCG CK +AP+ ++    
Sbjct: 6   LALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEK---- 61

Query: 89  LAKLKEPIVIAKVDADKYSR-LASKQEIDAFPTLKIFMHG 127
           LA+    ++  K+D ++ ++ LA +  I   PT KI    
Sbjct: 62  LAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKEN 101

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 77.1 bits (190), Expect = 2e-17
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 44  KVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
            +IE ++  +   +      ++V FY+P C +CK + P  +E A    +     V  +++
Sbjct: 7   SIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYA---KEYGSSAVFGRIN 63

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
                  A K  +   PT K F HG
Sbjct: 64  IATNPWTAEKYGVQGTPTFKFFCHG 88

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 42  DGKVIELD-----ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPI 96
           +G+VI        + +F+    S   I+VDF A WC  CK +AP   E    LAK    +
Sbjct: 3   EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAE----LAKKFPNV 58

Query: 97  VIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
              KVD D+   +A +  ++A PT      G
Sbjct: 59  TFLKVDVDELKAVAEEWNVEAMPTFIFLKDG 89

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 43  GKVIELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
           GKV E+++  F   +  +    +++D +  WCG  K +AP+ ++    LA+    ++  K
Sbjct: 5   GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEK----LAEEYLDVIFLK 60

Query: 101 VDADKYSR-LASKQEIDAFPTLKIFMHG 127
           +D ++ ++ LA +  I   PT KI    
Sbjct: 61  LDCNQENKTLAKELGIRVVPTFKILKEN 88

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 75.9 bits (187), Expect = 5e-17
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 15/103 (14%)

Query: 37  TKFKIDGKVIELDESNFDSAISSFDY------------ILVDFYAPWCGHCKRLAPQLDE 84
              + +GKVI L ++ F + + +F+              +VDFYA WCG CK +AP LDE
Sbjct: 3   LATEGNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDE 62

Query: 85  AAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
            A    +    IVI KVD +K   LA    I + P++      
Sbjct: 63  LA---KEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPME 102

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 75.1 bits (185), Expect = 8e-17
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 30  GLSSEEETKFKIDGKVIEL-DESNFDSAIS----SFDYILVDFYAPWCGHCKRLAPQLDE 84
           G  + EE     +G VI   ++  FD+ ++    +   +++DF A WCG C+ +AP   E
Sbjct: 1   GPMAAEEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAE 60

Query: 85  AAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
                AK     V  KVD D+   +A K  ++A PT      G
Sbjct: 61  ----YAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDG 99

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 74.7 bits (184), Expect = 8e-17
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 43  GKVIEL-DESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA 99
           G V ++  ++ F  A+ +     ++VDF A WCG  K + P        L++    ++  
Sbjct: 11  GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFL 66

Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYLKKFV 149
           +VD D    +AS+ E+ + PT + F  G    E+ G  K + L   + + V
Sbjct: 67  EVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEK-LEATINELV 116

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 75.7 bits (186), Expect = 8e-17
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 43  GKVIEL-DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA 99
             V E+     F+  +   +   ++V F+APW   C ++   + E    LAK    +   
Sbjct: 12  AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAE----LAKELPQVSFV 67

Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMHG 127
           K++A+    ++ K EI + PT   F + 
Sbjct: 68  KLEAEGVPEVSEKYEISSVPTFLFFKNS 95

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 74.7 bits (184), Expect = 8e-17
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 43  GKVIEL-DESNFDS----AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV 97
           G VI +  ++ +D+           I+VDF A WCG CK +AP  +  +         ++
Sbjct: 2   GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLS---NDYAGKVI 58

Query: 98  IAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFVA 150
             KVD D  + +A    I A PT  ++  G+  +   G  + + L   + K  A
Sbjct: 59  FLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDK-LKALVAKHAA 111

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 5/107 (4%)

Query: 47  ELDESNFDSAISSFDY--ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
            ++ S  D  I       IL+                + E      +      +A  D +
Sbjct: 21  PVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVAVADLE 78

Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFVA 150
           +   +  +  +  FP   +F  G       G      L+  ++  V 
Sbjct: 79  QSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 125

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 44  KVIELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
             ++ D+++ D  +  +S   +++DF+A WCG CK ++P+L E +    +  + +V+ KV
Sbjct: 3   YQVK-DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELS---TQFADNVVVLKV 58

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
           D D+   +A +  I + PT     +G
Sbjct: 59  DVDECEDIAMEYNISSMPTFVFLKNG 84

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 52  NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS 111
              + I     +L+      CG C  +  +++     + +    +   ++       +A 
Sbjct: 10  ELATYIEEQQLVLLFIKTENCGVCDVMLRKVNY----VLENYNYVEKIEILLQDMQEIAG 65

Query: 112 KQEIDAFPTLKIFMHG 127
           +  +   PT+ +F +G
Sbjct: 66  RYAVFTGPTVLLFYNG 81

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 76.8 bits (189), Expect = 1e-16
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 6/122 (4%)

Query: 39  FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV- 97
           +  D ++I L+   FD+A++S +   V+FY+P C HC  LAP   E     AK  + ++ 
Sbjct: 93  YDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWRE----FAKEVDGLLR 148

Query: 98  IAKVDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKKFVAPDVSIL 156
           I  V+      L   + ++++P+L IF  G    +Y G R  E LV +  + V   V+ L
Sbjct: 149 IGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTEL 208

Query: 157 NS 158
           ++
Sbjct: 209 ST 210

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 42  DGKVIEL-DESNFDSAIS----SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPI 96
           +G VI    +  FD+ ++    +   +++DF A WCG C+ +AP   E     AK     
Sbjct: 5   EGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAE----YAKKFPGA 60

Query: 97  VIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
           +  KVD D+   +A    ++A PT      G
Sbjct: 61  IFLKVDVDELKDVAEAYNVEAMPTFLFIKDG 91

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
            + L ++NF  AI     +LVDF+A WCG C+ +AP L+E A       + + +AK++ D
Sbjct: 2   TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFA---EAHADKVTVAKLNVD 58

Query: 105 KYSRLASKQEIDAFPTLKIFMHG 127
           +     S+  I + PTL +F  G
Sbjct: 59  ENPETTSQFGIMSIPTLILFKGG 81

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 74.5 bits (183), Expect = 2e-16
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 15/108 (13%)

Query: 32  SSEEETKFKIDGKVIELDESNFDSAISSFDY------------ILVDFYAPWCGHCKRLA 79
           +++     K     I L  + F   I+ ++              +VDFYA WCG CK +A
Sbjct: 11  ATDTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVA 70

Query: 80  PQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
           P L+E +    +    I I KV+ DK   LA    I + PT+      
Sbjct: 71  PILEELS---KEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMK 115

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 42  DGKVIELD-----ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPI 96
           +G+VI              A  S   ++VDF A WCG C+ +AP   +    LAK    +
Sbjct: 15  EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFAD----LAKKLPNV 70

Query: 97  VIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
           +  KVD D+   +AS   I A PT      G
Sbjct: 71  LFLKVDTDELKSVASDWAIQAMPTFMFLKEG 101

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 44  KVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
             ++ + SN  + ++  +  I++ F+A WC  C   + ++D+         + I + KVD
Sbjct: 25  PRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQ---KYYGKRIYLLKVD 81

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            DK   LA K  + + PT+ +  + 
Sbjct: 82  LDKNESLARKFSVKSLPTIILLKNK 106

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 46  IELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
                    + I      +LVDF+A WCG C+RL   L      +A+  + +   KVD D
Sbjct: 8   FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPS----IAEANKDVTFIKVDVD 63

Query: 105 KYSRLASKQEIDAFPTLKIFMHG 127
           K    A    + + P L      
Sbjct: 64  KNGNAADAYGVSSIPALFFVKKE 86

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 77.1 bits (190), Expect = 3e-16
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 6/120 (5%)

Query: 45  VIELDESNFDSAI-SSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           ++ ++ESN    +  S    +L  F++    HC +L P L+  A   A+     ++AK+D
Sbjct: 9   IVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLA---AQYNGQFILAKLD 65

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFVAPDVSILNSDAE 161
            D    +A++  + A PT+ +F +G P + + GP+  E +   L   +  +  +    A 
Sbjct: 66  CDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPREEELXAQQAM 125

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 72.8 bits (179), Expect = 4e-16
 Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 49  DESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107
           D  +F   + + +  ++VDF+A WCG CK L P+L++     AK    +V+AKVD D ++
Sbjct: 19  DGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMV---AKQHGKVVMAKVDIDDHT 75

Query: 108 RLASKQEIDAFPTLKIFMHG 127
            LA + E+ A PT+    +G
Sbjct: 76  DLAIEYEVSAVPTVLAMKNG 95

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 29  RGLSSEEETKFKIDGKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAP 87
              SS    +     K+I L + +FD+ +   D  ILVDF+A WCG  K +AP LDE A 
Sbjct: 8   HHHSSGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIA- 66

Query: 88  ILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
              + +  + +AK++ D+    A K  I   PTL +F +G
Sbjct: 67  --DEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 104

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 72.3 bits (178), Expect = 4e-16
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 44  KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
            +++  + +F +  S    +L DF+APWCG  K +AP L+E      ++ + + I K+D 
Sbjct: 2   AIVKATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELD---QEMGDKLKIVKIDV 57

Query: 104 DKYSRLASKQEIDAFPTLKIFMHG 127
           D+    A K  + + PTL +   G
Sbjct: 58  DENQETAGKYGVMSIPTLLVLKDG 81

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 72.3 bits (178), Expect = 5e-16
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 44  KVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE A    + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA---DEYQGKLTVAKLN 59

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            D+    A K  I   PTL +F +G
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG 84

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 43  GKVIELD-----ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV 97
            +VI +          + A ++   +++DF A WCG C+ +AP   +    LAK     V
Sbjct: 12  AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFAD----LAKKFPNAV 67

Query: 98  IAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
             KVD D+   +A +  ++A PT      G
Sbjct: 68  FLKVDVDELKPIAEQFSVEAMPTFLFMKEG 97

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 71.9 bits (177), Expect = 6e-16
 Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 4/85 (4%)

Query: 44  KVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           +V ++++S++   +   +  ++VDF+APWCG CK +AP +DE A    +    I + K++
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELA---KEYSGKIAVYKLN 57

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            D+   +A++  I + PT+  F +G
Sbjct: 58  TDEAPGIATQYNIRSIPTVLFFKNG 82

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 71.1 bits (175), Expect = 9e-16
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 49  DESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106
             ++ +  I+      I+VDF+A WCG C+ +AP+++     LAK    +  AKVD D+ 
Sbjct: 6   TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEA----LAKEIPEVEFAKVDVDQN 61

Query: 107 SRLASKQEIDAFPTLKIFMHG 127
              A+K  + A PT      G
Sbjct: 62  EEAAAKYSVTAMPTFVFIKDG 82

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 43  GKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
             VI + ++ F+S +   +  +LV F+A WCG C+ ++P ++ AA       + + + K+
Sbjct: 7   KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAA---NTYSDRLKVVKL 63

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
           + D       K +++  P L++    
Sbjct: 64  EIDPNPTTVKKYKVEGVPALRLVKGE 89

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 32  SSEEETKFKIDGKVIELD-----ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA 86
             +E       G V  +      +     A      +L +F A WCG  +++AP   E  
Sbjct: 13  DDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIE-- 70

Query: 87  PILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
             L++    ++   +D D+ S  ++  EI A PT      G
Sbjct: 71  --LSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDG 109

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 44  KVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
             + + +S+FD  +      +LVDF+A WCG CK + P L E      +    + +AKV+
Sbjct: 3   HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIG---KEFAGKVTVAKVN 59

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            D      +  ++ + PTL +   G
Sbjct: 60  IDDNPETPNAYQVRSIPTLMLVRDG 84

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 43  GKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           G +  + + +F+  +   D  +LVDF+A WCG C+++AP L+  A   A+  + I I K+
Sbjct: 5   GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIA---AEYGDKIEIVKL 61

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
           + D+    A+K  + + PTL ++  G
Sbjct: 62  NIDENPGTAAKYGVMSIPTLNVYQGG 87

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 9/109 (8%)

Query: 44  KVIELDESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           K IE  ++ F  A+ +     ++VDF A WCG CK + P        L++    ++  +V
Sbjct: 3   KQIE-SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEV 57

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYLKKFV 149
           D D    +AS+ E+ + PT + F  G    E+ G  K + L   + + V
Sbjct: 58  DVDDCQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEK-LEATINELV 105

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 45  VIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
           + +LD + F+  I       LV F    C  C+++ P L+E        +E      VD 
Sbjct: 6   LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELR---LNYEESFGFYYVDV 62

Query: 104 DKYSRLASKQEIDAFPTLKIFMHG 127
           ++   L  +  +   P +  F  G
Sbjct: 63  EEEKTLFQRFSLKGVPQILYFKDG 86

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 44  KVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           +   +++  F + +      +LVDF+APWCG C+ +AP +DE A    + K+ +   K++
Sbjct: 2   EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIA---GEYKDKLKCVKLN 58

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            D+   +AS+  I + PT+ +F  G
Sbjct: 59  TDESPNVASEYGIRSIPTIMVFKGG 83

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 71.4 bits (175), Expect = 2e-15
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 42  DGKVIELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA 99
            G +   ++   D  +        +V+F+A W   C+  AP   + +         +   
Sbjct: 6   SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTG--LNFG 63

Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMHGIPT 130
           KVD  +Y+ ++++ ++   P  K     +PT
Sbjct: 64  KVDVGRYTDVSTRYKVSTSPLTK----QLPT 90

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 71.0 bits (174), Expect = 2e-15
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 44  KVIELDESNFDSAI----SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA 99
             I   E +F  A+         + VD +  WCG CKRL+  + + + +        V  
Sbjct: 7   DGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNL 66

Query: 100 KVDADKY--SRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYLKKFVAPD 152
           K+D +K     L  K  + A+PTL        +     G   A  L++ +K  V  +
Sbjct: 67  KMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESE 123

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 44  KVIELDESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           K +   + +F   +S       +V F    CG C R+AP        ++      V  +V
Sbjct: 4   KPVG-SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSS----MSNKYPQAVFLEV 58

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
           D  +    A+   I A PT + F + 
Sbjct: 59  DVHQCQGTAATNNISATPTFQFFRNK 84

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 70.1 bits (172), Expect = 2e-15
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 44  KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
            ++++ +++FDS + S    LVDF+A  CG CK +AP L+E A   A  +    I K+D 
Sbjct: 4   AIVKVTDADFDSKVESGV-QLVDFWATACGPCKMIAPVLEELA---ADYEGKADILKLDV 59

Query: 104 DKYSRLASKQEIDAFPTLKIFMHG 127
           D+    A+K E+ + PTL +F  G
Sbjct: 60  DENPSTAAKYEVMSIPTLIVFKDG 83

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
            +  F +P C HC      ++E A    ++ + + +  ++  +  + A +  I A PT+ 
Sbjct: 5   KIELFTSPMCPHCPAAKRVVEEVA---NEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61

Query: 123 IFMHGIPTEYYGPRKAELLVRYLKKFV 149
           I       E+ G    E LV  +KK +
Sbjct: 62  INGDV---EFIGAPTKEALVEAIKKRL 85

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 72.9 bits (179), Expect = 4e-15
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 43  GKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
            K+I L + +FD+ +   D  ILVDF+A WCG CK +AP LDE A    + +  + +AK+
Sbjct: 12  DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA---DEYQGKLTVAKL 68

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
           + D+    A K  I   PTL +F +G
Sbjct: 69  NIDQNPGTAPKYGIRGIPTLLLFKNG 94

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 69.6 bits (171), Expect = 5e-15
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 45  VIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
           VIE+ + NF+  +   D  +LVDF+APWCG C+ +AP ++E A    + +  + + KV+ 
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELA---KEYEGKVKVVKVNV 59

Query: 104 DKYSRLASKQEIDAFPTLKIFMHG 127
           D+    A++  I + PTL +F +G
Sbjct: 60  DENPNTAAQYGIRSIPTLLLFKNG 83

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 70.1 bits (172), Expect = 5e-15
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 44  KVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
             I++ +++F + + S +  +LVDF+A WCG CK +AP L+E A    +    + +AK+D
Sbjct: 13  ATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIA---TERATDLTVAKLD 69

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
            D     A   ++ + PTL +F  G
Sbjct: 70  VDTNPETARNFQVVSIPTLILFKDG 94

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 68.9 bits (169), Expect = 9e-15
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 45  VIEL-DESNFDSAISSFD---YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEP-IVIA 99
           VIE+ D+  F    ++      I++ F+  W   CK L    +  +    +     +   
Sbjct: 2   VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAIS---NEPSNSNVSFL 58

Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMHG 127
            +DAD+ S ++   EI A P   I   G
Sbjct: 59  SIDADENSEISELFEISAVPYFIIIHKG 86

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 71.6 bits (175), Expect = 1e-14
 Identities = 15/131 (11%), Positives = 32/131 (24%), Gaps = 3/131 (2%)

Query: 41  IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEP--IVI 98
           ++  V    +            I +   A  C  C+     L E   ++ +      I +
Sbjct: 3   LNLDVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKL 62

Query: 99  AKVDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKKFVAPDVSILN 157
                  +     K  +D  PT+ I         Y G          +            
Sbjct: 63  DIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQ 122

Query: 158 SDAEVSDFVEN 168
              +  + ++ 
Sbjct: 123 LSEKTLELLQV 133

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 68.2 bits (166), Expect = 2e-13
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 27  TGRGLSSEEETKFKIDGKVIELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEA 85
            G   ++     F +  +  +L E   +          +  F    CG+C   A    + 
Sbjct: 102 AGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWD- 160

Query: 86  APILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145
               A   + I    +DA +   LA + ++   P   I ++    E+ G +     + Y+
Sbjct: 161 ---FALANDYITSKVIDASENQDLAEQFQVVGVPK--IVINKGVAEFVGAQPENAFLGYI 215

Query: 146 KK 147
             
Sbjct: 216 MA 217

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 1/81 (1%)

Query: 44  KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
               ++              ++ F    C +C  +  +L   +      K  I  A+++ 
Sbjct: 10  NFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG-KFNIYYARLEE 68

Query: 104 DKYSRLASKQEIDAFPTLKIF 124
           +K   LA K + +  PT    
Sbjct: 69  EKNIDLAYKYDANIVPTTVFL 89

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 43  GKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA 99
           G++ E+  + + + +       ++++  Y      C  +   L      LA+        
Sbjct: 10  GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSV----LARKFPETKFV 65

Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMHG 127
           K   +           +  PT+ ++ +G
Sbjct: 66  KAIVNS---CIEHYHDNCLPTIFVYKNG 90

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 43  GKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA 99
           G++ E+  + + + +       ++++  Y      C  +   L      LA+        
Sbjct: 3   GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSL----LARKFPETKFV 58

Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMHG 127
           K   +           +  PT+ ++ +G
Sbjct: 59  KAIVNS---CIQHYHDNCLPTIFVYKNG 83

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 66.1 bits (161), Expect = 2e-13
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 52  NFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
             D AI S     +++ F       C +L   L + +   + L +   I  VD D+ +  
Sbjct: 13  EVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTS---SDLSKMAAIYLVDVDQTAVY 69

Query: 110 ASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLK 146
               +I   P+   F +G      YG       V   K
Sbjct: 70  TQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFK 107

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 65.2 bits (159), Expect = 3e-13
 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 18/100 (18%)

Query: 43  GKVIELDESNFDSAISSFDY-ILVDFYAPWCG--------------HCKRLAPQLDEAAP 87
            K+I L + +FD+ +   D  ILVDF+A WCG               CK +AP LDE A 
Sbjct: 3   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA- 61

Query: 88  ILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
              + +  + +AK++ D+    A K  I   PTL +F +G
Sbjct: 62  --DEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123
           +  F +P C +C      +DEA     +  + I + K+D       A +  + A P + I
Sbjct: 5   IEVFTSPTCPYCPMAIEVVDEAK---KEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 65.1 bits (158), Expect = 2e-12
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 3/127 (2%)

Query: 27  TGRGLSSEEETKFKIDGKVIELDESNFDSA-ISSFDYILVDFYAPWCGHCKRLAPQLDEA 85
            G   ++  E    +  +   L +    +      D  ++ F  P C +C        + 
Sbjct: 100 AGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKF 159

Query: 86  APILAKLKEP-IVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVR 143
           A    K  +  I+   V+A +Y   A +  + A P + I ++G    E+ G    ++ + 
Sbjct: 160 AIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLE 219

Query: 144 YLKKFVA 150
            L   ++
Sbjct: 220 KLLSALS 226

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 59.3 bits (143), Expect = 7e-11
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 50  ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
           E     A +S   ++V  +  WCG CK L P+  E+  I ++L    V+  ++ ++  + 
Sbjct: 36  EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEI-SELSHNFVMVNLEDEEEPKD 94

Query: 110 AS-KQEIDAFPTLKIF------------MHGIPTEYYGPRKAELLVRYLKK 147
                +    P +                +G P+  Y    AE +V+ +K+
Sbjct: 95  EDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKE 145

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 9/94 (9%)

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS----RLASKQEIDAF 118
           +++D YA WC  CK           +   L +  V+ + +          L     +   
Sbjct: 34  VMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGL 92

Query: 119 PTLKIF----MHGIPTEYYGPRKAELLVRYLKKF 148
           PT+  F             G   AE    +L+  
Sbjct: 93  PTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} Length = 250

 Score = 56.3 bits (135), Expect = 3e-09
 Identities = 23/211 (10%), Positives = 55/211 (26%), Gaps = 28/211 (13%)

Query: 149 VAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDES-----VMSNLALKYKKKAWFAVAK 203
            +P    + +  +V +F+++      + +G              + A   ++   F    
Sbjct: 4   GSPPSKEILTLKQVQEFLKDGDD--VVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTF 61

Query: 204 D--------FSEDTMVLYDFDKVPALVALQPSYNEHNIFY---GPFDEEFLEEFIKQNFL 252
                     S   +VL   +K       Q  Y          G  +   +++++ ++ L
Sbjct: 62  STEIAKFLKVSLGKLVLMQPEK------FQSKYEPRMHVMDVQGSTEASAIKDYVVKHAL 115

Query: 253 PLSVPINQDTLNLLKDDKRKIVL---AIVEDETEEKSQKLVTTLKAAASANRELVFCYVG 309
           PL               +  +V+        +    +Q     +   A    E  F    
Sbjct: 116 PLVGHRKTSNDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTFAIAD 175

Query: 310 IKQFADFADTFEANKKSKLPKMVVWDGNENY 340
            + +A          +S              
Sbjct: 176 EEDYATEVKDL-GLSESGGDVNAAILDESGK 205

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 14/100 (14%), Positives = 24/100 (24%), Gaps = 7/100 (7%)

Query: 32  SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK 91
           S+  E        +          A+   +          C +C++ A  L       A+
Sbjct: 1   SNAMEQFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVV---AE 57

Query: 92  LKEPI----VIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
            K  I           +      S+  I   P       G
Sbjct: 58  TKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDG 97

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 9/98 (9%)

Query: 34  EEETKFKIDGKVIEL-DESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL 89
           ++ +     G V EL     F   I        I+V  Y      C  L   L      L
Sbjct: 103 QKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLIC----L 158

Query: 90  AKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
           A     +   K+ A   +    +   D  PTL ++  G
Sbjct: 159 AAEYPMVKFCKIKASN-TGAGDRFSSDVLPTLLVYKGG 195

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR--LASKQEIDAFPT 120
           ++V F++  C +C+++   +     +   L+   V+A V  D      LA +  +   PT
Sbjct: 22  VMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPT 81

Query: 121 LKIF 124
               
Sbjct: 82  FVFL 85

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 59/390 (15%), Positives = 119/390 (30%), Gaps = 128/390 (32%)

Query: 10  WILLCLLLLTGRGMMLLTGRG---LSSE----EETKFKIDGKVIELDESNFDSAISSFDY 62
            +L+        G+    G G   ++ +     + + K+D K+  L+  N +S  +  + 
Sbjct: 152 NVLID-------GV---LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE- 200

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           +L            ++ P     +   + +K  I   +    +  RL   +         
Sbjct: 201 MLQKL-------LYQIDPNWTSRSDHSSNIKLRIHSIQ---AELRRLLKSK--------- 241

Query: 123 IFMHGIPTEYYGPRKAELLV-------RYLKKFVAPDVS----ILNSDAEVSDFVENAGT 171
                       P +  LLV       +    F   ++S    +     +V+DF+  A T
Sbjct: 242 ------------PYENCLLVLLNVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATT 286

Query: 172 FFP----LFIGFGLDESVMSNLALKY------------KKKAWFAVA------KDFSE-- 207
                    +    DE    +L LKY                   ++      +D     
Sbjct: 287 THISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 208 DTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLK 267
           D     + DK+     ++ S N           E+ + F + +  P S  I    L+L+ 
Sbjct: 345 DNWKHVNCDKLTT--IIESSLNVLE------PAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 268 DDKRKIVLAIVEDETEEKS-----------------QKLVTTLKAAASANRELVFCYVGI 310
            D  K  + +V ++  + S                  +L   L+   + +R +V  Y   
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY--- 453

Query: 311 KQFADFADTFEANKKSKLPKMVVWDGNENY 340
               +   TF+++           D    Y
Sbjct: 454 ----NIPKTFDSDDLIPPY----LD---QY 472

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 41 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE 94
          + G    +  S   +      Y ++ FY P C +C++      E    +  ++ 
Sbjct: 15 VHGDNSRM--SRLKA-----QYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN 61

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151

 Score = 47.4 bits (112), Expect = 7e-07
 Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           ++V  +   C + + L     +   I    +   ++  +  +   +  S      +    
Sbjct: 47  LMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDG--QYVPRI 104

Query: 123 IFM-------------HGIPTEYYGPRKAELLVRYLKK 147
           +F+             +      Y PR   LL+  +KK
Sbjct: 105 MFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKK 142

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 7/54 (12%)

Query: 41 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE 94
            G    L    F +     +Y L+    P C  C  +   L  +  I      
Sbjct: 19 DSGVKGTL--YQFPA-----EYTLLFINNPGCHACAEMIEGLKASPVINGFTAA 65

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} Length = 147

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 241 EFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN 300
                 +K N LPL +   + T   +   + K  + +   ++       ++  K AA + 
Sbjct: 2   HHHHHHMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 61

Query: 301 R-ELVFCYVGIKQF-ADFADTFEANKKSKLPKMVVWDGNEN 339
           + +++F ++            F   KK + P + +    E 
Sbjct: 62  KGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEE 102

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 36  ETKFKIDGKVIELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE 94
           E   ++      L+++  ++  S      +     P C +C          A    K   
Sbjct: 113 EVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGN 172

Query: 95  P-IVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK 147
           P I+   V+A +   +A K  + + P+  I ++G    + G    E  + Y+K 
Sbjct: 173 PVILSEAVEAYENPDIADKYGVMSVPS--IAINGYL-VFVGVPYEEDFLDYVKS 223

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 42  DGKVIELDESN--FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA 99
           D       +      +   +    L+ F A WC  C+ L   L       A + +   + 
Sbjct: 9   DEHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSL-RNQKNTALIAKHFEVV 67

Query: 100 KVD---ADKYSRLASK---QEIDAFPTLKIF 124
           K+D    D+   L+        D  P + + 
Sbjct: 68  KIDVGNFDRNLELSQAYGDPIQDGIPAVVVV 98

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 43  GKVIEL-DESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVI 98
           G V EL     F   I        I+V+ Y      C  L   L+     LA     +  
Sbjct: 99  GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLEC----LAAEYPMVKF 154

Query: 99  AKVDADKYSRLASKQEIDAFPTLKIFMHG 127
            K+ A   +    +   D  PTL ++  G
Sbjct: 155 CKIRASN-TGAGDRFSSDVLPTLLVYKGG 182

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 67  FYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQEIDAFPTLKIFM 125
           + A WC HC+        A   +      +  +        ++  ++  I ++PT  I  
Sbjct: 19  YGAYWCPHCQDQKELFGAAFDQVPY----VECSPNGPGTPQAQECTEAGITSYPTWII-- 72

Query: 126 HGIPTEYYGPRKAELLVRY 144
           +G    Y G R  E L   
Sbjct: 73  NG--RTYTGVRSLEALAVA 89

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 11/47 (23%)

Query: 41 IDGKVIELDESNFDSAISSF--DYILVDFYAPWCGHCKRLAPQLDEA 85
            G    L               Y ++ F+   CGHC++  P+L + 
Sbjct: 19 TTGTYRYL---------YDVQAKYTILFFWDSQCGHCQQETPKLYDW 56

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 17/116 (14%)

Query: 62  YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY--SRLASKQEIDAFP 119
           +++++        C+ L   +     +   ++E  +  +V  D     R     ++  FP
Sbjct: 44  WLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFP 103

Query: 120 TLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPL 175
            + I           PR  +     L ++   DVS      +V+ F+   G    L
Sbjct: 104 YVSILD---------PRTGQK----LVEWHQLDVSSFLD--QVTGFLGEHGQLDGL 144

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 13/75 (17%)

Query: 63  ILVDF-YAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------YSRLA 110
           I + F  + WC  C ++  Q+ +++         + + +VD  +              L 
Sbjct: 50  IGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELK 109

Query: 111 SKQEIDAFPTLKIFM 125
           ++ ++  FP L +F+
Sbjct: 110 AQYKVTGFPEL-VFI 123

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 40.8 bits (95), Expect = 8e-05
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 53  FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE-PIVIAKVDADKYSRLAS 111
                   +  L+ F  P C +C R   ++    P+  + +  P+   ++       L  
Sbjct: 11  GSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLEL 70

Query: 112 KQEIDAFPTLKIFMHG 127
            + +   PT  + M G
Sbjct: 71  ARPVTFTPTF-VLMAG 85

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 12/100 (12%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
           +++DF    C +C+++   +     + + +    V+  +  D  + L    +I    T +
Sbjct: 50  VMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTER 109

Query: 123 IFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEV 162
                      G + + L          P   +++++   
Sbjct: 110 ------TLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNP 143

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF 118
            L+ F++  C  CK   PQ++E      K ++ + +  V   +        +I   
Sbjct: 32  TLIHFWSISCHLCKEAMPQVNEFR---DKYQDQLNVVAVHMPRSEDDLDPGKIKET 84

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           +   +  +E+  D      D I   F A WC  C+   P L +    L     P  I  V
Sbjct: 13  NRCEVNANEALKDK-----DIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFV 67

Query: 102 DADK 105
            +D+
Sbjct: 68  SSDR 71

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 16/80 (20%)

Query: 41  IDGKVIELDESNFDSAISSF--DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVI 98
            DGK + L         SS     +++ F A WCG C++  P +++   +  K      +
Sbjct: 21  TDGKQVTL---------SSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFAL 71

Query: 99  AKVDADKYSRLASKQEIDAF 118
             +D D+       +++ AF
Sbjct: 72  IGIDRDE-----PLEKVLAF 86

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 9/85 (10%)

Query: 61  DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQEIDAFP 119
                 + A WC HC+        A   +      +  +        ++  ++  I ++P
Sbjct: 198 QIGGTMYGAYWCPHCQDQKELFGAAFDQVPY----VECSPNGPGTPQAQECTEAGITSYP 253

Query: 120 TLKIFMHGIPTEYYGPRKAELLVRY 144
           T  I        Y G R  E L   
Sbjct: 254 TWIIN----GRTYTGVRSLEALAVA 274

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 62  YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE-PIVIAKVDADKYSRLASKQEIDAF 118
            +L+DF+A  C +C+R  P +          K+  + +  V   +Y+       +   
Sbjct: 84  VVLIDFWAYSCINCQRAIPHVVGWY---QAYKDSGLAVIGVHTPEYAFEKVPGNVAKG 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	100.0
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	100.0
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	100.0
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	100.0
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.97
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.96
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.93
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.89
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.89
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.89
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.88
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.88
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.88
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.87
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.87
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.86
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.85
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.85
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.85
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.85
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.84
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.84
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.83
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.83
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.83
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.83
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.83
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.83
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.83
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.83
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.83
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.83
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.83
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.82
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.82
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.82
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.82
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.82
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.82
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.82
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.81
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.81
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.81
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.81
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.81
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.81
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.81
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.81
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.8
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.8
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.8
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.8
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.8
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.8
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.8
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.8
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.8
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.8
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.79
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.79
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.79
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.79
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.79
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.79
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.79
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.78
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.78
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.78
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.78
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.78
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.78
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.77
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.77
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.77
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.77
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.77
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.77
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.76
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.76
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.76
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.76
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.76
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.75
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.75
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.75
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.75
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.75
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.74
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.74
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.74
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.73
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.72
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.72
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.71
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.7
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.69
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.51
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.68
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.68
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.67
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.67
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.66
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.64
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.64
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.64
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.64
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.63
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.63
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.62
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.61
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.61
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.61
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.6
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.58
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.53
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.29
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.5
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.5
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.5
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.5
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.49
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.49
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.48
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.47
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.47
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.47
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.45
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	99.45
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.44
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.43
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.42
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.42
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.4
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.4
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.4
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.39
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.39
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.38
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.38
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.38
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.38
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.38
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.37
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.36
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.36
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.35
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.34
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.33
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.33
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.33
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.32
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.31
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.3
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.3
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.3
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.29
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.28
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.26
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.23
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.23
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.23
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.2
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.2
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.2
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.18
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.18
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.18
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.16
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.16
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.13
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.12
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.7
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.1
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.05
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.05
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.04
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.03
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.03
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.02
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.57
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.98
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.98
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.98
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.95
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.94
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.93
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.93
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.92
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.92
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.91
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.91
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.89
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.88
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.85
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.85
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.84
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.81
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.8
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.8
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.79
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.77
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.74
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.74
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.71
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.7
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.67
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.66
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.66
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.62
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.6
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.6
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.59
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.58
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.58
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.58
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.51
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.5
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.5
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.49
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.46
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.46
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.45
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.43
3me7_A	170	Putative uncharacterized protein; electron transfe	98.43
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.43
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.42
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	98.42
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.4
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.39
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.38
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.36
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.35
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.34
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.34
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.33
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.32
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.32
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.31
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.3
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.3
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.28
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.27
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.27
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.27
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.26
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.25
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.24
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.24
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.24
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.24
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.23
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.22
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.2
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.2
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.2
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.18
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.18
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.18
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.16
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.16
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.16
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.15
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.15
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.14
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.14
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.13
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.13
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.12
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.11
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.11
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.09
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.09
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.09
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.09
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.08
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.07
2l57_A	126	Uncharacterized protein; structural genomics, unkn	98.07
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.06
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.06
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.06
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.06
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.04
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.04
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.04
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.03
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.03
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	98.02
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.01
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.01
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.0
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.0
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.0
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	97.99
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	97.99
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	97.98
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	97.98
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	97.97
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.97
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.97
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	97.96
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	97.96
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.95
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	97.95
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.95
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	97.95
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	97.94
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	97.93
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	97.93
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	97.92
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.91
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	97.91
1mek_A	120	Protein disulfide isomerase; electron transport, r	97.9
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	97.88
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	97.87
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	97.86
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	97.84
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.84
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	97.84
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	97.8
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.8
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	97.8
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.78
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.77
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	97.77
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	97.74
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.74
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.74
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	97.73
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	97.72
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	97.72
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	97.71
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.7
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	97.68
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.68
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	97.61
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	97.61
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	97.61
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	96.76
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.6
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	97.58
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	97.57
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	97.56
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	97.55
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	97.54
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	97.53
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	97.53
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	97.45
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	97.42
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.41
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.37
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	97.32
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	97.31
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.31
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	97.3
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	97.3
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.29
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	97.28
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.27
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	97.26
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	97.26
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	97.22
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.12
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	97.1
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.08
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.02
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	97.02
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	97.0
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	96.92
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	96.84
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	96.83
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	96.8
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	96.76
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	96.74
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	96.74
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	96.71
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	96.64
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	96.58
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	96.55
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	96.55
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	96.54
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	96.46
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	96.33
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	96.29
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	96.28
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	95.23
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	96.22
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	96.21
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	96.04
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	96.0
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	95.99
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	95.95
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	95.92
3raz_A	151	Thioredoxin-related protein; structural genomics,	95.91
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	95.9
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	95.81
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	95.74
4evm_A	138	Thioredoxin family protein; structural genomics, n	95.71
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	95.64
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	95.63
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	95.6
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	95.59
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	95.54
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	95.54
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	95.51
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	95.48
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	95.47
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	95.46
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	95.33
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	95.2
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	95.15
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	95.1
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	95.08
3ira_A	173	Conserved protein; methanosarcina mazei,structural	94.88
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	94.88
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	94.84
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	94.83
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	94.82
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	94.57
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	94.56
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	94.53
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	94.15
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	94.14
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	94.05
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	93.95
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	93.88
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	93.87
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	93.79
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	93.79
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	93.78
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	93.08
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	93.07
2lrt_A	152	Uncharacterized protein; structural genomics, thio	92.71
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	92.23
1ttz_A	87	Conserved hypothetical protein; structural genomic	91.99
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	91.95
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	91.92
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	91.51
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	91.48
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	90.92
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	90.87
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	89.85
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	89.64
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	89.34
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	88.85
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	88.69
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	88.53
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	88.52
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	88.27
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	88.17
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	88.08
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	87.98
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	87.76
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	87.62
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	87.16
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	86.35
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	85.61
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	85.05
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	84.28
1t4y_A	105	Adaptive-response sensory-kinase SASA; alpha/beta	84.17
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	83.55
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	83.99
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	83.44
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	83.42
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	83.42
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	82.53
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	83.08
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	82.28
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	82.24
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	81.63
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	81.46
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	81.31
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	81.12
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	80.22

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=100.00  E-value=8.5e-45  Score=337.68  Aligned_cols=312  Identities=15%  Similarity=0.221  Sum_probs=264.7

Q ss_pred             cCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHH------HHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh
Q 017971           39 FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLA------PQLDEAAPILAKLKEPIVIAKVDADKYSRLASK  112 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~------~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~  112 (363)
                      +...+.|+.|++++|+++++++++++|.||||||+||+...      |.|+++++.+++.  ++.+++|||++++++|++
T Consensus         9 ~~~~~~v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~--~v~~~~Vd~~~~~~l~~~   86 (367)
T 3us3_A            9 YDGVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDK--GVGFGLVDSEKDAAVAKK   86 (367)
T ss_dssp             CCCCCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTTHHHHHH
T ss_pred             CCCCCccEECCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcC--CceEEEEeCcccHHHHHH
Confidence            55667899999999999998899999999999999973332      7999999988643  599999999999999999


Q ss_pred             CCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHH-hcCCcccEEEeecCCh-----hHH
Q 017971          113 QEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVE-NAGTFFPLFIGFGLDE-----SVM  186 (363)
Q Consensus       113 ~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~-~~~~~~~~~v~~~~~~-----~~~  186 (363)
                      |+|+++||+++|++|+++.|.|.++.+.|++|+.+++++++..+++..+++++++ +++   +++|+|+...     +.+
T Consensus        87 ~~V~~~PTl~~f~~G~~~~y~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~---~~vv~ff~~~~~~~~~~f  163 (367)
T 3us3_A           87 LGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDE---IKLIGYFKNKDSEHYKAF  163 (367)
T ss_dssp             HTCCSTTEEEEEETTEEEECCSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSS---CEEEEECSCTTCHHHHHH
T ss_pred             cCCCcCceEEEEECCcEEEeCCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCC---cEEEEEECCCCchHHHHH
Confidence            9999999999999999999999999999999999999999999999899999998 343   5788877542     358


Q ss_pred             HHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCC-CCHHHHHHHHHhhcCCCcccCChhhHHh
Q 017971          187 SNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNFLPLSVPINQDTLNL  265 (363)
Q Consensus       187 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~-~~~~~l~~fi~~~~~p~~~~lt~~~~~~  265 (363)
                      .++|..+++.+.|+.  ..++.+++.++++. |++++|++..+.+..|.|. .+.++|.+||..++.|+++++|.+++..
T Consensus       164 ~~~A~~~~~~~~F~~--~~~~~~~~~~~v~~-p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~  240 (367)
T 3us3_A          164 KEAAEEFHPYIPFFA--TFDSKVAKKLTLKL-NEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYE  240 (367)
T ss_dssp             HHHHHHHTTTSCEEE--ECCHHHHHHHTCCT-TCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTCSCSEEECCGGGHHH
T ss_pred             HHHHHhhcCCcEEEE--ECCHHHHHHcCCCC-CeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCccceeecChhhHHH
Confidence            889999988777765  34577899999985 9999999877788899985 8999999999999999999999999877


Q ss_pred             hhcC--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchhHH----hhcCCCCCCCCCeEEEEeC
Q 017971          266 LKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFA----DTFEANKKSKLPKMVVWDG  336 (363)
Q Consensus       266 l~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~~----~~~gi~~~~~~P~~vi~~~  336 (363)
                      +..+  .++.+++|+ +.......++.+.++++|+++++   +.|+|+|+.+++..+    +.||+ . .+.|+++|++.
T Consensus       241 ~~~~~~~~~~~~~f~-~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl-~-~~~P~~~i~~~  317 (367)
T 3us3_A          241 TWEDDMDGIHIVAFA-EEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDI-D-LSAPQIGVVNV  317 (367)
T ss_dssp             HHHSCBTTEEEEEEC-CTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTC-C-TTSCEEEEEET
T ss_pred             HHhhccCCcEEEEEE-cCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCC-C-CCCCeEEEEec
Confidence            6654  235555555 44555678899999999999986   999999999987665    45999 3 57999999998


Q ss_pred             C-C--CeeEEE---EEEeehhhhhHhhhhhc
Q 017971          337 N-E--NYLTVS---INVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       337 ~-~--~y~~~~---~~~~~~~~~~~~~~~~~  361 (363)
                      . +  +||.+.   .+++.+.|..|+..+|.
T Consensus       318 ~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~  348 (367)
T 3us3_A          318 TDADSVWMEMDDEEDLPSAEELEDWLEDVLE  348 (367)
T ss_dssp             TTCCEEECCCCTTSCCCCHHHHHHHHHHHHH
T ss_pred             ccccceeecCCcccccCCHHHHHHHHHHHHc
Confidence            6 3  355444   47999999999999885

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=100.00  E-value=8.2e-44  Score=329.58  Aligned_cols=312  Identities=20%  Similarity=0.270  Sum_probs=266.6

Q ss_pred             cCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHH-------HHHHHHHhhcCCCCeEEEEEeCccchhhhh
Q 017971           39 FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQ-------LDEAAPILAKLKEPIVIAKVDADKYSRLAS  111 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~-------~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~  111 (363)
                      ++.++.|+.|++++|++.++++++++|.||||||+ |+++.|.       |+++++.+++.  ++.+++|||++++++|+
T Consensus         7 ~~~~~~v~~l~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~--~v~~~~Vd~~~~~~l~~   83 (350)
T 1sji_A            7 YDGKDRVVSLTEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK--DIGFVMVDAKKEAKLAK   83 (350)
T ss_dssp             CCCCCCCEEECHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS--SEEEEEEETTTTHHHHH
T ss_pred             CCCCCccEECCHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc--CcEEEEEeCCCCHHHHH
Confidence            44567899999999999998899999999999999 9999888       99999988764  59999999999999999


Q ss_pred             hCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHH-hcCCcccEEEeecCCh-----hH
Q 017971          112 KQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVE-NAGTFFPLFIGFGLDE-----SV  185 (363)
Q Consensus       112 ~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~-~~~~~~~~~v~~~~~~-----~~  185 (363)
                      +|+|.++||+++|++|+...|.|.++.+.|.+|+.+.+++++..+++.++++++++ .++   +++|+|+...     +.
T Consensus        84 ~~~v~~~Pt~~~~~~g~~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~---~~vv~ff~~~~~~~~~~  160 (350)
T 1sji_A           84 KLGFDEEGSLYVLKGDRTIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQ---IKLIGFFKSEESEYYKA  160 (350)
T ss_dssp             HHTCCSTTEEEEEETTEEEEECSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSS---CEEEEECSCTTSHHHHH
T ss_pred             hcCCCccceEEEEECCcEEEecCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCC---cEEEEEECCCCcHHHHH
Confidence            99999999999999999888999999999999999999999999998889999987 554   4778877541     35


Q ss_pred             HHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCC-CCHHHHHHHHHhhcCCCcccCChhhHH
Q 017971          186 MSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNFLPLSVPINQDTLN  264 (363)
Q Consensus       186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~-~~~~~l~~fi~~~~~p~~~~lt~~~~~  264 (363)
                      +.++|..+++...|+..  .++++++.++++ .|++++|++.++.+..|.|. .+.++|.+||..++.|.++++|.+++.
T Consensus       161 ~~~~A~~~~~~~~f~~~--~~~~~~~~~~v~-~p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~  237 (350)
T 1sji_A          161 FEEAAEHFQPYIKFFAT--FDKGVAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMF  237 (350)
T ss_dssp             HHHHHHHTTTTSEEEEE--CCHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHHCCCSEEECCTTTHH
T ss_pred             HHHHHHhhccCcEEEEE--CCHHHHHHcCCC-CCcEEEEeCCCCCceecCCCCCCHHHHHHHHHHcCccchhhcChhhHH
Confidence            78889888887766653  457789999999 89999999876778889997 899999999999999999999999999


Q ss_pred             hhhcCCC-cEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchhHH----hhcCCCCCCCCCeEEEEeC
Q 017971          265 LLKDDKR-KIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFA----DTFEANKKSKLPKMVVWDG  336 (363)
Q Consensus       265 ~l~~~~~-~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~~----~~~gi~~~~~~P~~vi~~~  336 (363)
                      .++.++. +..++++....+....++.+.++++|+++++   +.|+|+|+.+++..+    +.||+ . .+.|+++|++.
T Consensus       238 ~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi-~-~~~P~~~i~~~  315 (350)
T 1sji_A          238 ETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKI-D-LFKPQIGVVNV  315 (350)
T ss_dssp             HHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCS-C-TTSCEEEEEES
T ss_pred             HHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchhhHHHHHHHHhhcCC-C-ccCCcEEEEec
Confidence            9988754 5444445444444467889999999999873   999999999998888    88999 3 46899999998


Q ss_pred             C-C-CeeE-E---EEEEeehhhhhHhhhhhc
Q 017971          337 N-E-NYLT-V---SINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       337 ~-~-~y~~-~---~~~~~~~~~~~~~~~~~~  361 (363)
                      . + +|+. .   +++.+.+.|..|+..+|.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~  346 (350)
T 1sji_A          316 TDADSVWMEIPDDDDLPTAEELEDWIEDVLS  346 (350)
T ss_dssp             SSSCEEESCSSCCSCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccCCCcccccCCHHHHHHHHHHHhc
Confidence            4 4 5542 2   247888999999999885

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=100.00  E-value=4e-43  Score=328.54  Aligned_cols=310  Identities=19%  Similarity=0.339  Sum_probs=241.2

Q ss_pred             CCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcC---CCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL---KEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~---~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      .+.|+.|++++|+++++++++++|.||||||+||+++.|.|+++++.+++.   ...+.++.|||++++++|++|+|.++
T Consensus         4 ~~~v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~   83 (382)
T 2r2j_A            4 GSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKY   83 (382)
T ss_dssp             ----CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEE
T ss_pred             CCceEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcC
Confidence            457899999999999988899999999999999999999999999998643   23499999999999999999999999


Q ss_pred             CEEEEEeCCEEE--eecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHH
Q 017971          119 PTLKIFMHGIPT--EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLAL  191 (363)
Q Consensus       119 Pt~~~~~~g~~~--~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~  191 (363)
                      ||+++|++|+.+  .|.|.++.+.|.+|+.+.+++++..+++..++++ +..+.   +++++|+.+.     ..+..+|.
T Consensus        84 Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~---~~~v~ff~~~~~~~~~~f~~~A~  159 (382)
T 2r2j_A           84 PTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSK---RNIIGYFEQKDSDNYRVFERVAN  159 (382)
T ss_dssp             SEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHSCCCEEC-------------C---CEEEEEESCSSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCcEeeeeecCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCC---CEEEEEECCCCChhHHHHHHHHH
Confidence            999999999876  5999999999999999999999999988777887 54443   5777776432     25888999


Q ss_pred             HhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCC--CCCcccccCCC-CHHHHHHHHHhhcCCCcccCChhhHHhhhc
Q 017971          192 KYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS--YNEHNIFYGPF-DEEFLEEFIKQNFLPLSVPINQDTLNLLKD  268 (363)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~--~~~~~~~~g~~-~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~  268 (363)
                      .+++.+.|++...   ++.+.+++++.|  ++|++.  .+....|.|.+ +.++|.+||..+..|.++++|.+++..++.
T Consensus       160 ~~~~~~~F~~~~~---~~~~~~~v~~~p--i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~  234 (382)
T 2r2j_A          160 ILHDDCAFLSAFG---DVSKPERYSGDN--IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTE  234 (382)
T ss_dssp             HHTTTCEEEEEES---CC--------CE--EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHSCSSEECCHHHHHHHHT
T ss_pred             HhhccceEEEEeh---hhHHhhCCCCCc--eEECCCCCCCcCcccCCCCCCHHHHHHHHHhcccCceEecChhhHHHHhc
Confidence            9988776655432   467778888888  455553  23567899999 999999999999999999999999999998


Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEE--E
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVS--I  345 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~--~  345 (363)
                      .+.+++++++.....+..+.+.+.+.+++.++++ +.|+|+|+.+++.+++.||+ ...++|+++|.+....|..++  +
T Consensus       235 ~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~~~~~~~~~gl-~~~~~P~i~i~~~~~~y~~~~~~~  313 (382)
T 2r2j_A          235 EGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQK-TPADCPVIAIDSFRHMYVFGDFKD  313 (382)
T ss_dssp             TCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTTTHHHHHHTTC-CGGGCSEEEEECSSCEEECCCSGG
T ss_pred             CCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHHhHHHHHHcCC-CccCCCEEEEEcchhcCCCCcccc
Confidence            8999998888665556667788888888888887 99999999999999999999 456899999998754453332  2


Q ss_pred             EEeehhhhhHhhhhhc
Q 017971          346 NVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       346 ~~~~~~~~~~~~~~~~  361 (363)
                      ..+.+.|..||..+|.
T Consensus       314 ~~~~~~i~~F~~d~~~  329 (382)
T 2r2j_A          314 VLIPGKLKQFVFDLHS  329 (382)
T ss_dssp             GGSTTHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHC
Confidence            2344789999999874

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=100.00  E-value=2.2e-41  Score=326.59  Aligned_cols=308  Identities=24%  Similarity=0.419  Sum_probs=261.6

Q ss_pred             CCeEEcChhhHHHhHcCC---CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           43 GKVIELDESNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~---~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      +.|+.|++++|++.+.++   ++++|.||||||++|+++.|.|+++++.+++.   +.++.|||++++++|++|+|.++|
T Consensus         1 s~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~---v~~~~vd~~~~~~l~~~~~v~~~P   77 (481)
T 3f8u_A            1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI---VPLAKVDCTANTNTCNKYGVSGYP   77 (481)
T ss_dssp             CCCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CCEEEEETTTCHHHHHHTTCCEES
T ss_pred             CceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc---eEEEEEECCCCHHHHHhcCCCCCC
Confidence            368999999999999777   99999999999999999999999999998764   999999999999999999999999


Q ss_pred             EEEEEeCCE-EEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHh
Q 017971          120 TLKIFMHGI-PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKY  193 (363)
Q Consensus       120 t~~~~~~g~-~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~  193 (363)
                      |+++|++|+ ...|.|.++.+.|.+|+.+.++|++..+.+..+++++++.++   +++++|+.+.     ..+..+|..+
T Consensus        78 tl~~~~~g~~~~~~~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~vv~~~~~~~~~~~~~f~~~a~~~  154 (481)
T 3f8u_A           78 TLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKD---ASIVGFFDDSFSEAHSEFLKAASNL  154 (481)
T ss_dssp             EEEEEETTEEEEECCSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSS---CEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred             EEEEEeCCceeeeecCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCC---cEEEEEECCCccchHHHHHHHHHHh
Confidence            999999996 457999999999999999999999999999999999998765   5777776432     3588889999


Q ss_pred             hhhhHHHHhhhcchhhhhhcCCCCCCeEEEEc------CCCCCccccc-CCCCHHHHHHHHHhhcCCCcccCChhhHHhh
Q 017971          194 KKKAWFAVAKDFSEDTMVLYDFDKVPALVALQ------PSYNEHNIFY-GPFDEEFLEEFIKQNFLPLSVPINQDTLNLL  266 (363)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~------~~~~~~~~~~-g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l  266 (363)
                      ++.+.|+.  ..+.++++.++++..| +++|+      ..++....|. |.++.++|.+||..+++|+++++|.+++..+
T Consensus       155 ~~~~~F~~--~~~~~~~~~~~v~~~~-i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~~n~~~~  231 (481)
T 3f8u_A          155 RDNYRFAH--TNVESLVNEYDDNGEG-IILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLI  231 (481)
T ss_dssp             TTTSCEEE--ECCHHHHHHHCSSSEE-EEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTTTSCEECTTTHHHH
T ss_pred             ccCceEEE--ECCHHHHHHhCCCCCc-EEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCCCccccChhHHHHh
Confidence            88877764  4567889999998754 88888      3345667888 8889999999999999999999999999998


Q ss_pred             hcCCCcEEEEEEeCC---ChhhHHHHHHHHHHHHHhCCC----cEEEEEeccCchhHHhhcCCC-CCCCCCeEEEEeCCC
Q 017971          267 KDDKRKIVLAIVEDE---TEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEAN-KKSKLPKMVVWDGNE  338 (363)
Q Consensus       267 ~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~~a~~~~~----~~f~~vd~~~~~~~~~~~gi~-~~~~~P~~vi~~~~~  338 (363)
                      ..  .+.+++++..+   ..+..+.+.+.++++|+++++    +.|+++|+.++...++.||++ ...+.|.++|++.++
T Consensus       232 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~~~l~~~gl~~~~~~~P~~~i~~~~~  309 (481)
T 3f8u_A          232 QG--KDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKG  309 (481)
T ss_dssp             TT--SSEEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCTTCSCEEEEECSSS
T ss_pred             cC--CCceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHHHcCCCcccCCCcEEEEEcCCC
Confidence            75  45666655432   222234467888999988764    999999999999999999993 134799999999777


Q ss_pred             CeeEEEEEEeeh--hhhhHhhhhhc
Q 017971          339 NYLTVSINVLKT--RVCFFMLTLLQ  361 (363)
Q Consensus       339 ~y~~~~~~~~~~--~~~~~~~~~~~  361 (363)
                      +.|.++++++.+  .|..|+..++.
T Consensus       310 ~ky~~~~~~t~e~~~l~~f~~~~~~  334 (481)
T 3f8u_A          310 EKFVMQEEFSRDGKALERFLQDYFD  334 (481)
T ss_dssp             CEEECCSCCCTTSHHHHHHHHHHHH
T ss_pred             cccCCCcccCccHHHHHHHHHHHhc
Confidence            777777888888  99999998875

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=100.00  E-value=5.7e-40  Score=318.38  Aligned_cols=304  Identities=23%  Similarity=0.398  Sum_probs=256.3

Q ss_pred             cCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           39 FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      +..++.|+.|++++|++.++++++++|.||||||+||+++.|.|+++++.+++.  ++.++.|||++++++|++|+|.++
T Consensus        10 ~~~~~~v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~   87 (504)
T 2b5e_A           10 APEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK--NITLAQIDCTENQDLCMEHNIPGF   87 (504)
T ss_dssp             CCTTSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT--TCEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CCCCCCcEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC--CeEEEEEECCCCHHHHHhcCCCcC
Confidence            445678999999999999998999999999999999999999999999988753  499999999999999999999999


Q ss_pred             CEEEEEeCCE---EEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCC--h---hHHHHHH
Q 017971          119 PTLKIFMHGI---PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLA  190 (363)
Q Consensus       119 Pt~~~~~~g~---~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~--~---~~~~~~a  190 (363)
                      ||+++|++|+   ...|.|.++.+.|.+|+.+.+++++..+++   ++++++.++.. +.+++|+.+  +   ..+..+|
T Consensus        88 Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~~~v~~i~~---~~~~~~~~~~~-~~~v~~f~~~~~~~~~~f~~~A  163 (504)
T 2b5e_A           88 PSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVAD---LPAYLANETFV-TPVIVQSGKIDADFNATFYSMA  163 (504)
T ss_dssp             SEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTSCSEEECSC---HHHHHHHSCCS-SCEEEEEESCCHHHHHHHHHHH
T ss_pred             CEEEEEeCCccccceeecCCCCHHHHHHHHHHhcCCcceeHHH---HHHHHhcCCCc-eEEEEEeCCCCchHHHHHHHHH
Confidence            9999999997   667999999999999999999999999988   88898876522 244444432  2   3588889


Q ss_pred             HHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCC-C---CHHHHHHHHHhhcCCCcccCChhhHHhh
Q 017971          191 LKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-F---DEEFLEEFIKQNFLPLSVPINQDTLNLL  266 (363)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~-~---~~~~l~~fi~~~~~p~~~~lt~~~~~~l  266 (363)
                      ..+++...|+...    ++.+.++++    ++++++.+ ....|.|. +   +.++|.+||..+.+|.++++|.+++..+
T Consensus       164 ~~~~~~~~F~~~~----~~~~~~~~~----i~l~~~~~-~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t~~~~~~~  234 (504)
T 2b5e_A          164 NKHFNDYDFVSAE----NADDDFKLS----IYLPSAMD-EPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQY  234 (504)
T ss_dssp             HHTTTTCEEEEEE----CTTSCCEEE----EEETTEEE-EEEECCSCHHHHTSHHHHHHHHHHHSSCSSCBCCHHHHHHH
T ss_pred             HHhhcCcEEEEEH----HHHHhcCCe----EEecCCCC-cccccCCcccccCCHHHHHHHHHhcccCCcccCCHhHHHHH
Confidence            9998877776432    456666654    67776643 66778888 6   9999999999999999999999999999


Q ss_pred             hcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC-CCeeEEE
Q 017971          267 KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENYLTVS  344 (363)
Q Consensus       267 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~-~~y~~~~  344 (363)
                      +..+.++++++++.  .+..+.+.+.++++|+++++ +.|+|+|+.+++.+++.||+  ..+.|+++|++.. +++|...
T Consensus       235 ~~~~~~~~~l~~~~--~~~~~~~~~~l~~~a~~~~~~i~F~~id~~~~~~~~~~~gl--~~~~P~v~i~~~~~~~ky~~~  310 (504)
T 2b5e_A          235 VESGLPLGYLFYND--EEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNM--KEQFPLFAIHDMTEDLKYGLP  310 (504)
T ss_dssp             HHTTSCEEEEEESS--HHHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTC--CSCSSEEEEEETTTTEEEECC
T ss_pred             hcCCCcEEEEEecC--cccHHHHHHHHHHHHHhcCCeeEEEEEehhhhHHHHHHcCC--cccCCEEEEEeCCcCcccCCC
Confidence            99999998888744  33347889999999999998 99999999999999999999  3689999999984 5455554


Q ss_pred             --EE-----------EeehhhhhHhhhhhc
Q 017971          345 --IN-----------VLKTRVCFFMLTLLQ  361 (363)
Q Consensus       345 --~~-----------~~~~~~~~~~~~~~~  361 (363)
                        ++           .+.+.+..|+..++.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~  340 (504)
T 2b5e_A          311 QLSEEAFDELSDKIVLESKAIESLVKDFLK  340 (504)
T ss_dssp             CCCHHHHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred             CCccchhhccccccccCHHHHHHHHHHHHc
Confidence              44           667889999988764

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=6e-34  Score=289.88  Aligned_cols=311  Identities=18%  Similarity=0.223  Sum_probs=249.5

Q ss_pred             cccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC
Q 017971           37 TKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID  116 (363)
Q Consensus        37 ~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~  116 (363)
                      +.+..++.|+.|+.++|++.++++++++|.||||||++|+++.|.|+++++.+++.   +.+++|||++++++|++|+|.
T Consensus       110 g~~~~~~~v~~l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~---v~~~~vd~~~~~~l~~~~~v~  186 (780)
T 3apo_A          110 GIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL---LRIGAVNCGDDRMLCRMKGVN  186 (780)
T ss_dssp             STTTTCTTEEECCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTCSSCC------
T ss_pred             cccCCCcceeeechHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCc---eEEEEEeCCCcHHHHHHcCCc
Confidence            45677889999999999999988999999999999999999999999999988653   999999999999999999999


Q ss_pred             cCCEEEEEeCCEE-EeecCCCCHHHHHHHHHhhcCCCceecCCh---HHHHHHHHhcCCcccEEEeecCCh------hHH
Q 017971          117 AFPTLKIFMHGIP-TEYYGPRKAELLVRYLKKFVAPDVSILNSD---AEVSDFVENAGTFFPLFIGFGLDE------SVM  186 (363)
Q Consensus       117 ~~Pt~~~~~~g~~-~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~---~~~~~~~~~~~~~~~~~v~~~~~~------~~~  186 (363)
                      ++||+++|++|+. .+|.|.++.+.|.+|+.+.+++.+..+++.   +++++++..+.   +++++|++..      ..+
T Consensus       187 ~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~vi~f~~~~~~~~~~~~~  263 (780)
T 3apo_A          187 SYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGV---GWLITFCSKGEDCLTSQTR  263 (780)
T ss_dssp             --CEEEEECTTSCCEECCSCSCHHHHHHHHHTTSCCCEEECCHHHHHHHHHHHHHHTC---EEEEEEECTTSCCCCHHHH
T ss_pred             eeeeEEEEeCCcEeeEecCCCCHHHHHHHHHHhchhhheeccchhhHHHHHhhhccCC---CEEEEEecCcccccCHHHH
Confidence            9999999999984 679999999999999999999999999887   67888886643   5777776432      234


Q ss_pred             HHHHHHhhhhhH--------------------------------------------------------------------
Q 017971          187 SNLALKYKKKAW--------------------------------------------------------------------  198 (363)
Q Consensus       187 ~~~a~~~~~~~~--------------------------------------------------------------------  198 (363)
                      ..++..+++.+.                                                                    
T Consensus       264 ~~l~~~f~~~~~f~~v~c~~~~~l~~~~gi~~~p~~~f~~~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~~p~v~~it~~  343 (780)
T 3apo_A          264 LRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSAN  343 (780)
T ss_dssp             HHHHHHTTTTEEEEEEETTTSHHHHTCC-----CEEEECTTCCSSTTTGGGSEEECCCCHHHHHHHHHHHSCCCCEECHH
T ss_pred             HHHHHHhhccceEEEEEcCCCHHHHHHhCCCCCceeeeccccccCCCcccceeccccccHHHHHHHHHHhCCCcccCCHH
Confidence            445544421110                                                                    


Q ss_pred             -----------------------------------------HHHh-hhcchhhhhhcCCCCCCeEEEEcCCC-CCccccc
Q 017971          199 -----------------------------------------FAVA-KDFSEDTMVLYDFDKVPALVALQPSY-NEHNIFY  235 (363)
Q Consensus       199 -----------------------------------------~~~~-~~~~~~~~~~~~~~~~p~iv~~~~~~-~~~~~~~  235 (363)
                                                               |+.+ ...+..+++.+++.. |++++++..+ +....|.
T Consensus       344 ~f~~~~~~~~~lv~F~~~~~~~~~~~~~~~~A~~~~~~~i~f~~~D~~~~~~~~~~~~~~~-p~i~l~~~~~~e~~~~~~  422 (780)
T 3apo_A          344 QLEDRLAHHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQ-PSLAVFKGQGTKEYEIHH  422 (780)
T ss_dssp             HHHHHHTTSEEEEEEECC-----CCGGGGGHHHHHGGGTEEEEEEEGGGCHHHHHHTTCCS-CEEEEEESSTTSSEEECC
T ss_pred             HHHHHhccCCeEEEEecCCccccchHHHHHHHHhhccCceeEEEEeCCCchhhHhhccccC-ChhhhccCCCcceeeecc
Confidence                                                     0000 012345677888876 9999998765 4467788


Q ss_pred             CCCCHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCch
Q 017971          236 GPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFA  314 (363)
Q Consensus       236 g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~  314 (363)
                      |..+.++|.+|+..+..|.+.++|.+++..+  .++++++.|+.+ -....+.+...+.++|+++++ +.|+.||+++++
T Consensus       423 g~~~~~~i~~f~~~~~~~~v~~l~~~~~~~~--~~~~vlv~F~a~-wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~  499 (780)
T 3apo_A          423 GKKILYDILAFAKESVNSHVTTLGPQNFPAS--DKEPWLVDFFAP-WSPPSRALLPELRKASTLLYGQLKVGTLDCTIHE  499 (780)
T ss_dssp             SCCCHHHHHHHHHHHHTSCEEECCTTTSCTT--CCSCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH
T ss_pred             cHhhHHHHHHHhhhccCCCCEecCHHHHHHc--CCCeEEEEEECC-CCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCCCH
Confidence            9999999999999999999999999999888  567888888754 345667889999999999976 999999999999


Q ss_pred             hHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          315 DFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       315 ~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      .+++.||+   ...|++++++. |+.+...+....+.+..|+..+|.
T Consensus       500 ~~~~~~~v---~~~Pt~~~~~~-g~~~~~~g~~~~~~l~~fi~~~~~  542 (780)
T 3apo_A          500 GLCNMYNI---QAYPTTVVFNQ-SSIHEYEGHHSAEQILEFIEDLRN  542 (780)
T ss_dssp             HHHHHTTC---CSSSEEEEEET-TEEEEECSCSCHHHHHHHHHHHHS
T ss_pred             HHHHHcCC---CcCCeEEEEcC-CceeeecCcccHHHHHHHHHhhcc
Confidence            99999999   45999999965 555778888899999999998874

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=1.9e-31  Score=271.54  Aligned_cols=309  Identities=16%  Similarity=0.206  Sum_probs=257.5

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      +.|.++++++|++.  .+++++|.||++||++|+++.|.|+++++.+++   ++.|+.|||++++.+|+.|+|.++|+++
T Consensus       440 ~~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~  514 (780)
T 3apo_A          440 SHVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYG---QLKVGTLDCTIHEGLCNMYNIQAYPTTV  514 (780)
T ss_dssp             SCEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCCEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CeEEEEEeCCCCHHHHHHcCCCcCCeEE
Confidence            45899999999887  778999999999999999999999999998864   4999999999999999999999999999


Q ss_pred             EEeCCEEEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHHhh
Q 017971          123 IFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYK  194 (363)
Q Consensus       123 ~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~  194 (363)
                      +|++|+...|.|.++.+.|.+|+.+.+.+++..++. .++++++...+...++++.|+..+        +.+.++|..++
T Consensus       515 ~~~~g~~~~~~g~~~~~~l~~fi~~~~~~~v~~l~~-~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~  593 (780)
T 3apo_A          515 VFNQSSIHEYEGHHSAEQILEFIEDLRNPSVVSLTP-STFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT  593 (780)
T ss_dssp             EEETTEEEEECSCSCHHHHHHHHHHHHSCSEEECCH-HHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHT
T ss_pred             EEcCCceeeecCcccHHHHHHHHHhhcccceeecCc-ccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh
Confidence            999998888999999999999999999999999975 679999876543446778777542        35777888887


Q ss_pred             hhhHHHHh-hhcchhhhhhcCCCCCCeEEEEcCCCC---CcccccC-CCCHHHHHHHHHhhcCCCcccCChhhHHh-hhc
Q 017971          195 KKAWFAVA-KDFSEDTMVLYDFDKVPALVALQPSYN---EHNIFYG-PFDEEFLEEFIKQNFLPLSVPINQDTLNL-LKD  268 (363)
Q Consensus       195 ~~~~~~~~-~~~~~~~~~~~~~~~~p~iv~~~~~~~---~~~~~~g-~~~~~~l~~fi~~~~~p~~~~lt~~~~~~-l~~  268 (363)
                      +...|+.+ .+.+..++..++++++|++++|+.+..   .+..|.| ..+.++|.+||.+...|.+.+++.+++.. +..
T Consensus       594 ~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~~~v~~l~~~~~~~~~~~  673 (780)
T 3apo_A          594 GLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQ  673 (780)
T ss_dssp             TTSEEEEEETTTTHHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSCCCSEEECHHHHHHHTTT
T ss_pred             CCeEEEEEECcchHHHHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcccccccCCHHHHHHHHhc
Confidence            75544433 234566788999999999999987543   3566889 88999999999999999999999999965 666


Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEE--
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSI--  345 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~--  345 (363)
                      .++++++.|+. .-....+.+...+.++|+++++ +.|+.+|+++++.+++.+|+   ...|++++++..+......+  
T Consensus       674 ~~~~v~v~F~a-~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~g~~~~~~~G~~  749 (780)
T 3apo_A          674 GKTHWVVDFYA-PWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGI---KAYPSVKLYQYERAKKSIWEEQ  749 (780)
T ss_dssp             CSSCEEEEEEC-TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTC---CSSSEEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEEEC-CCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCC---CcCCEEEEEcCCCccccccCcc
Confidence            77788877764 3566678889999999999876 99999999999999999999   67999999954443334444  


Q ss_pred             --EEeehhhhhHhhhhhc
Q 017971          346 --NVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       346 --~~~~~~~~~~~~~~~~  361 (363)
                        ....+.+..|+...|+
T Consensus       750 ~g~~~~~~l~~~l~~~l~  767 (780)
T 3apo_A          750 INSRDAKTIAALIYGKLE  767 (780)
T ss_dssp             ECCCCHHHHHHHHHHHTT
T ss_pred             cCCcCHHHHHHHHHHHHH
Confidence              4678899999988875

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.1e-31  Score=236.58  Aligned_cols=215  Identities=24%  Similarity=0.405  Sum_probs=183.0

Q ss_pred             CCCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCcC
Q 017971           40 KIDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--KYSRLASKQEID  116 (363)
Q Consensus        40 ~~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~  116 (363)
                      ..++.|++|++++|++.+ +.+++++|.|||+||++|+++.|.|+++++.+.+.   +.++.|||+  +++++|++|+|.
T Consensus        14 ~~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~~~~l~~~~~I~   90 (298)
T 3ed3_A           14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNKNKALCAKYDVN   90 (298)
T ss_dssp             SSCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTTTHHHHHHTTCC
T ss_pred             CCCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCccCHHHHHhCCCC
Confidence            356789999999999999 56789999999999999999999999999988653   899999998  789999999999


Q ss_pred             cCCEEEEEeCCE------------------EEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEe
Q 017971          117 AFPTLKIFMHGI------------------PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIG  178 (363)
Q Consensus       117 ~~Pt~~~~~~g~------------------~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~  178 (363)
                      ++||+++|++|+                  ...|.|.++.+.|++|+.+.+++.+..+++..+++++++.++.  +.+++
T Consensus        91 ~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~--~~vi~  168 (298)
T 3ed3_A           91 GFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPK--LSVVL  168 (298)
T ss_dssp             BSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSS--EEEEE
T ss_pred             ccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCc--eEEEE
Confidence            999999999885                  5679999999999999999999999999998899999987643  56666


Q ss_pred             ecCC---hhHHHHHHHHhhhhhHHHHhhhcchhhhhhc-----C-----C-------------CCCCeEEEEcCCCCCcc
Q 017971          179 FGLD---ESVMSNLALKYKKKAWFAVAKDFSEDTMVLY-----D-----F-------------DKVPALVALQPSYNEHN  232 (363)
Q Consensus       179 ~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~-----~-------------~~~p~iv~~~~~~~~~~  232 (363)
                      |..+   ...++.+|..+++.+.|+.+.  +.+++..+     +     +             ...|++++|+...+.+.
T Consensus       169 fs~~~~~~~~f~~~A~~~~~~~~F~~v~--~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~  246 (298)
T 3ed3_A          169 FSKQDKISPVYKSIALDWLGKFDFYSIS--NKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFW  246 (298)
T ss_dssp             EESSSSCCHHHHHHHHHTBTTEEEEEEE--GGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEE
T ss_pred             EcCCCcchHHHHHHHHHhhcCcEEEEEc--chHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceE
Confidence            6533   357999999999988877653  23333222     2     2             56899999998888899


Q ss_pred             cccC-CCCHHHHHHHHH--hhcCCCcccCChh
Q 017971          233 IFYG-PFDEEFLEEFIK--QNFLPLSVPINQD  261 (363)
Q Consensus       233 ~~~g-~~~~~~l~~fi~--~~~~p~~~~lt~~  261 (363)
                      .|.| .++.++|.+||.  .+..|.++++|..
T Consensus       247 ~y~g~~~~~~~i~~fi~~~~~~~p~~~~ls~~  278 (298)
T 3ed3_A          247 EYEGNSINKNDISKFLRDTFSITPNEGPFSRR  278 (298)
T ss_dssp             ECCCSSCCHHHHHHHHHHHHTCCCSSSTTSHH
T ss_pred             EeccccCCHHHHHHHHHhhcCCCCCcCCCchH
Confidence            9995 689999999999  7789999999973

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.96  E-value=2.4e-28  Score=213.85  Aligned_cols=210  Identities=28%  Similarity=0.507  Sum_probs=176.1

Q ss_pred             cCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           39 FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      ...++.|+.|++++|++.+.++++++|.||++||++|+++.|.|.++++.+++.+.++.++.|||++++++|++|+|.++
T Consensus        11 ~~~~~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   90 (241)
T 3idv_A           11 VKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGY   90 (241)
T ss_dssp             CEEETTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSS
T ss_pred             cccCCCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcC
Confidence            34467899999999999999999999999999999999999999999999987766799999999999999999999999


Q ss_pred             CEEEEEeCCEEEeecCCCCHHHHHHHHHhhcCCC-------ceecCChHHHHHHHHhcCCcccEEEeecCCh--------
Q 017971          119 PTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPD-------VSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------  183 (363)
Q Consensus       119 Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~-------v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------  183 (363)
                      ||+++|++|+.+.|.|.++.+.|.+|+.+...+.       +..+ +..++++++..++   ++++.|+..+        
T Consensus        91 Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~v~f~a~wC~~C~~~~  166 (241)
T 3idv_A           91 PTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVL-TKENFDEVVNDAD---IILVEFYAPWCGHCKKLA  166 (241)
T ss_dssp             SEEEEEETTEEEECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEEC-CTTTHHHHHHHCS---EEEEEEECTTCTGGGGTH
T ss_pred             CEEEEEcCCCcccccCcccHHHHHHHHhhccCcccccccccceec-cHHHHHHhhccCC---eEEEEEECCCCHHHHHhH
Confidence            9999999999999999999999999999987653       3444 4467999987765   5777776432        


Q ss_pred             hHHHHHHHHhhhh---hHHH-HhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCCC
Q 017971          184 SVMSNLALKYKKK---AWFA-VAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPL  254 (363)
Q Consensus       184 ~~~~~~a~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~  254 (363)
                      +.+..++..+.+.   ..+. +..+.+.+++..|++.++|++++|++  +....|.|..+.++|.+||+++..|.
T Consensus       167 p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~--g~~~~~~g~~~~~~l~~~l~~~~~~~  239 (241)
T 3idv_A          167 PEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRK--GRPYDYNGPREKYGIVDYMIEQSGAA  239 (241)
T ss_dssp             HHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEET--TEEEECCSCCSHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEEC--CeEEEecCCCCHHHHHHHHHhhhCCC
Confidence            4577777777653   2332 22345678999999999999999986  45566899999999999999987664

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.93  E-value=4.7e-25  Score=193.43  Aligned_cols=211  Identities=16%  Similarity=0.240  Sum_probs=157.8

Q ss_pred             ccccCCCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC--ccchhhhhh
Q 017971           36 ETKFKIDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA--DKYSRLASK  112 (363)
Q Consensus        36 ~~~~~~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~--~~~~~l~~~  112 (363)
                      .+.++..+.|..|++++|++.+ +.+++++|.|||+||++|+++.|.|+++++.+.+....+.|+.|||  ++++++|++
T Consensus         5 ~~l~~~~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~   84 (244)
T 3q6o_A            5 SALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRD   84 (244)
T ss_dssp             -CCSCTTSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHH
T ss_pred             cCCCCCCCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHH
Confidence            3446667899999999999987 5558999999999999999999999999999987555699999999  678999999


Q ss_pred             CCcCcCCEEEEEeCC------EEEeecCCCCHHHHHHHHHhhcCCCce---------ecCChHHHHHHHHhcCCcccEEE
Q 017971          113 QEIDAFPTLKIFMHG------IPTEYYGPRKAELLVRYLKKFVAPDVS---------ILNSDAEVSDFVENAGTFFPLFI  177 (363)
Q Consensus       113 ~~i~~~Pt~~~~~~g------~~~~y~g~~~~~~i~~~i~~~~~~~v~---------~i~~~~~~~~~~~~~~~~~~~~v  177 (363)
                      |+|.++||+++|.+|      ..+.+.| ++.+.|.+++.+.+.....         ...+..++++++..+... +..+
T Consensus        85 ~~v~~~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~-~~al  162 (244)
T 3q6o_A           85 FNIPGFPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEE-YLAL  162 (244)
T ss_dssp             TTCCSSSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCS-EEEE
T ss_pred             cCCCccCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCc-eEEE
Confidence            999999999999873      4445666 7999999999888753321         233457799998776543 3444


Q ss_pred             eecC-ChhHHHHHHHHhhhh--hHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCccccc-CCCCHHHHHHHHHh
Q 017971          178 GFGL-DESVMSNLALKYKKK--AWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQ  249 (363)
Q Consensus       178 ~~~~-~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~-g~~~~~~l~~fi~~  249 (363)
                      .|.+ +....++++..+...  ..+..+.+....+++.|+++++|+++++.++ +....+. ..-+.+.+..++++
T Consensus       163 ~f~~~~~~~~~~~~~d~~~~~~i~v~~~~~~~~~l~~~f~v~~~Pslvl~~~~-g~~~~~~~~~~~r~~~~~~l~~  237 (244)
T 3q6o_A          163 IFEXGGSYLAREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLLFRN-GSVSRVPVLMESRSFYTAYLQR  237 (244)
T ss_dssp             EEECTTCCHHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCCCSSEEEEEETT-SCEEECCCSSSSHHHHHHHHHT
T ss_pred             EEEECCcchHHHHHHHhccCCceEEEEEeCchHHHHHHcCCCCCCeEEEEeCC-CCeEeeccccccHHHHHHHHHh
Confidence            4443 334566666666643  2233333445889999999999999999864 4444444 33356666666654

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.89  E-value=9.5e-23  Score=160.21  Aligned_cols=111  Identities=23%  Similarity=0.413  Sum_probs=98.0

Q ss_pred             ccCCCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhc--CCCCeEEEEEeCccchhhhhhCC
Q 017971           38 KFKIDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK--LKEPIVIAKVDADKYSRLASKQE  114 (363)
Q Consensus        38 ~~~~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~--~~~~v~~~~vd~~~~~~l~~~~~  114 (363)
                      .+...+.|.+|++++|++.+ +++++++|.||++||++|+++.|.|+++++.+..  ...++.++.|||++++++|++|+
T Consensus        10 ~~~~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~   89 (127)
T 3h79_A           10 DGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMR   89 (127)
T ss_dssp             ---CCCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTT
T ss_pred             CcCCCCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcC
Confidence            34567889999999999998 4689999999999999999999999999988753  23569999999999999999999


Q ss_pred             cCcCCEEEEEeCCEE---EeecCCCCHHHHHHHHHhh
Q 017971          115 IDAFPTLKIFMHGIP---TEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       115 i~~~Pt~~~~~~g~~---~~y~g~~~~~~i~~~i~~~  148 (363)
                      |.++||+++|++|..   ..|.|.++.+.|.+|+.++
T Consensus        90 v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           90 VSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             CCSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             CccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            999999999998754   5799999999999999875

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.89  E-value=2.2e-22  Score=193.42  Aligned_cols=210  Identities=16%  Similarity=0.212  Sum_probs=158.3

Q ss_pred             cccCCCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc--cchhhhhhC
Q 017971           37 TKFKIDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--KYSRLASKQ  113 (363)
Q Consensus        37 ~~~~~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~  113 (363)
                      +.+++.+.|.++++++|++.+ +++++++|.|||+||++|+++.|.|+++++.+++.+..+.|+.|||+  +++++|++|
T Consensus         6 ~Ly~~~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~   85 (519)
T 3t58_A            6 VLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREF   85 (519)
T ss_dssp             CSCCTTSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHT
T ss_pred             ccCCCCCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHc
Confidence            445667889999999999987 56689999999999999999999999999999875556999999995  489999999


Q ss_pred             CcCcCCEEEEEeCC----EE-EeecCCCCHHHHHHHHHhhcCCC----------ceecCChHHHHHHHHhcCCcccEEEe
Q 017971          114 EIDAFPTLKIFMHG----IP-TEYYGPRKAELLVRYLKKFVAPD----------VSILNSDAEVSDFVENAGTFFPLFIG  178 (363)
Q Consensus       114 ~i~~~Pt~~~~~~g----~~-~~y~g~~~~~~i~~~i~~~~~~~----------v~~i~~~~~~~~~~~~~~~~~~~~v~  178 (363)
                      +|.++||+++|.+|    +. ..+.|.++.+.|.+++.+.+...          +..+ +..++++++..+... ++++.
T Consensus        86 ~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~i-t~~~l~~~l~~~~~~-~vall  163 (519)
T 3t58_A           86 NIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPA-KLNDIDGFFTRNKAD-YLALV  163 (519)
T ss_dssp             TCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBC-CHHHHTTGGGSCCCS-EEEEE
T ss_pred             CCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcC-CHHHHHHHhccCCCC-eEEEE
Confidence            99999999999853    33 34778899999999999887533          2333 446788888776543 45555


Q ss_pred             ecCCh-hHHHHHHHHhhhh--hHHHHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCC-CHHHHHHHHHh
Q 017971          179 FGLDE-SVMSNLALKYKKK--AWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPF-DEEFLEEFIKQ  249 (363)
Q Consensus       179 ~~~~~-~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~-~~~~l~~fi~~  249 (363)
                      |.+.. ...++++..+...  ..+..+.+.+..++++||++++|+++++.+++ ....+.... ....+..++++
T Consensus       164 F~~~~s~~~~~~~ldl~~~~~v~v~~v~~~~~~l~~kfgV~~~Pslvl~~~nG-k~~~~~v~~~~r~~~~~~l~~  237 (519)
T 3t58_A          164 FEREDSYLGREVTLDLSQYHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNG-SVSRVPVLVESRSFYTSYLRG  237 (519)
T ss_dssp             EECTTCCHHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTS-CEEECCCSSCSHHHHHHHHTT
T ss_pred             ecCCchHHHHHHHHHhhccCCeeEEEecCchHHHHHHcCCCCCCeEEEEeCCC-ceeecccccccHHHHHHHHHH
Confidence            65443 3567777777653  33333345557899999999999999998743 322222222 34556677665

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.89  E-value=9.9e-22  Score=172.65  Aligned_cols=206  Identities=13%  Similarity=0.165  Sum_probs=169.3

Q ss_pred             hcCCCceecCChHHHHHHHHh-cCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeE
Q 017971          148 FVAPDVSILNSDAEVSDFVEN-AGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPAL  221 (363)
Q Consensus       148 ~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  221 (363)
                      ..+|++.+|++.++++++++. ++   +++|+|+.+.     +.+.++|..+++.+.|+.  +.++++++.++++. |++
T Consensus         3 ~~gP~v~~l~s~~~~~~~~~~~~~---v~vVgff~~~~~~~~~~F~~~A~~lr~~~~F~~--t~~~~v~~~~~v~~-p~i   76 (250)
T 3ec3_A            3 LGSPPSKEILTLKQVQEFLKDGDD---VVILGVFQGVGDPGYLQYQDAANTLREDYKFHH--TFSTEIAKFLKVSL-GKL   76 (250)
T ss_dssp             --CCSSEECCCHHHHHHHHHHCSS---CEEEEECSCTTCHHHHHHHHHHHHHTTTCCEEE--ECCHHHHHHHTCCS-SEE
T ss_pred             CCCCCceecCCHHHHHHHHhcCCC---eEEEEEEcCCCchHHHHHHHHHHhhhcCcEEEE--ECcHHHHHHcCCCC-CeE
Confidence            468999999999999999987 65   6889988542     358889999999888775  45678888999986 999


Q ss_pred             EEEcCC------CCCccccc--CCCCHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCcEEEEEEeCC-C---hhhHHHH
Q 017971          222 VALQPS------YNEHNIFY--GPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDE-T---EEKSQKL  289 (363)
Q Consensus       222 v~~~~~------~~~~~~~~--g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~-~---~~~~~~~  289 (363)
                      ++|++.      ++....|.  |.++.++|.+||..+++|+++++|.+|+..+.. +.+.+++++..+ .   .+..+.+
T Consensus        77 vlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~-~~~l~~~~~~~d~~~~~~~~~~~~  155 (250)
T 3ec3_A           77 VLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRYS-KRPLVVVYYSVDFSFDYRTATQFW  155 (250)
T ss_dssp             EEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSCTEEEECTTTHHHHSC-SSSEEEEEECCCCSTTTHHHHHHH
T ss_pred             EEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCCCceeecCccchhhhhc-cCccEEEEEecccccccchhHHHH
Confidence            999963      35567888  478999999999999999999999999998774 678887777422 1   4556778


Q ss_pred             HHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCC-CeEEEEeCCCCeeEEE-EEEeehhhhhHhhhhhc
Q 017971          290 VTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL-PKMVVWDGNENYLTVS-INVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       290 ~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~-P~~vi~~~~~~y~~~~-~~~~~~~~~~~~~~~~~  361 (363)
                      ++.++++|++++.+.|+|+|+.++...++.||+ ...+. |.+++++.+++.|.+. .+++.+.|..||..||.
T Consensus       156 ~~~~~~vAk~~kki~F~~~d~~~~~~~l~~fgl-~~~~~~p~~~~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  228 (250)
T 3ec3_A          156 RNKVLEVAKDFPEYTFAIADEEDYATEVKDLGL-SESGGDVNAAILDESGKKFAMEPEEFDSDALREFVMAFKK  228 (250)
T ss_dssp             HHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTC-SSCSCSCEEEEECTTSCEEECCCCSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcceeEEEEcHHHHHHHHHHcCC-CccCCCcEEEEEcCCCceecCCcccCCHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999 44443 6889998777666655 78899999999999985

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.88  E-value=7e-22  Score=173.93  Aligned_cols=207  Identities=15%  Similarity=0.257  Sum_probs=166.0

Q ss_pred             hhcCCCceecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeE
Q 017971          147 KFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPAL  221 (363)
Q Consensus       147 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  221 (363)
                      ++++|++.+|++.++++++++.++   +++|+|+.+.     +.+.++|..+++.+.|+..  .++++++.++++. |++
T Consensus         2 ~~~gP~v~~l~s~~~~~~~l~~~~---v~vvgff~~~~~~~~~~f~~~A~~lr~~~~F~~~--~~~~v~~~~~~~~-p~i   75 (252)
T 2h8l_A            2 PLGSPASVPLRTEEEFKKFISDKD---ASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHT--NVESLVNEYDDNG-EGI   75 (252)
T ss_dssp             ----CCEEECCSHHHHHHHHTSSS---CEEEEEESCTTSHHHHHHHHHHHHTTTTSCEEEE--CCHHHHHHHCSSS-EEE
T ss_pred             CcCCCCceeecCHHHHHHHhhcCC---eEEEEEECCCCChHHHHHHHHHHhcccCcEEEEE--ChHHHHHHhCCCC-CcE
Confidence            467899999999999999998765   5888888542     3588899999988877754  4677899999996 999


Q ss_pred             EEEcCC------CCCcccc-cCCCCHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCcEEEEEEeCCC---hhhHHHHHH
Q 017971          222 VALQPS------YNEHNIF-YGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDET---EEKSQKLVT  291 (363)
Q Consensus       222 v~~~~~------~~~~~~~-~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~---~~~~~~~~~  291 (363)
                      ++|++.      ++....| .|.++.++|.+||..+++|+++++|.+++..+..  .+.+++++..+.   .+..+.+.+
T Consensus        76 ~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~  153 (252)
T 2h8l_A           76 ILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG--KDLLIAYYDVDYEKNAKGSNYWRN  153 (252)
T ss_dssp             EEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSCSSCEECTTTHHHHSS--SSEEEEEECCBTTTBHHHHHHHHH
T ss_pred             EEEcchhhcccccccccccCCCCcCHHHHHHHHHhcccCCeeecccccHhhhcC--CCeEEEEeecchhhcchhHHHHHH
Confidence            999862      3456788 8999999999999999999999999999998854  466666654322   233557889


Q ss_pred             HHHHHHHhCCC----cEEEEEeccCchhHHhhcCCC-CCCCCCeEEEEeCCCCeeEEEEEEeehh--hhhHhhhhhc
Q 017971          292 TLKAAASANRE----LVFCYVGIKQFADFADTFEAN-KKSKLPKMVVWDGNENYLTVSINVLKTR--VCFFMLTLLQ  361 (363)
Q Consensus       292 ~l~~~a~~~~~----~~f~~vd~~~~~~~~~~~gi~-~~~~~P~~vi~~~~~~y~~~~~~~~~~~--~~~~~~~~~~  361 (363)
                      .++++|+++++    +.|+|+|+.++...++.||+. ...++|.++|++.++++|.++.+++.+.  |..||..++.
T Consensus       154 ~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~~ky~~~~~~t~~~~~i~~F~~~~~~  230 (252)
T 2h8l_A          154 RVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFD  230 (252)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTTSCEEECCSCCCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCcCcEecCCcccCcchHHHHHHHHHHHC
Confidence            99999998763    999999999999999999992 1358999999988776776777888888  9999999884

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=6.8e-22  Score=157.93  Aligned_cols=120  Identities=38%  Similarity=0.699  Sum_probs=109.0

Q ss_pred             cccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC
Q 017971           37 TKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID  116 (363)
Q Consensus        37 ~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~  116 (363)
                      .....++.+..+++++|++.+.++++++|.||++||++|+++.|.|.++++.+.+.+.++.++.|||++++++|++|+|.
T Consensus        11 ~~~~~~~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~   90 (140)
T 2dj1_A           11 LEVKEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVS   90 (140)
T ss_dssp             SCCEEETTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCC
T ss_pred             cccCCCCCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCC
Confidence            34445678999999999999988899999999999999999999999999998876567999999999999999999999


Q ss_pred             cCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhcCCCceec
Q 017971          117 AFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSIL  156 (363)
Q Consensus       117 ~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i  156 (363)
                      ++|++++|++|+...|.|.++.+.|.+|+.+.+.+++...
T Consensus        91 ~~Pt~~~~~~G~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  130 (140)
T 2dj1_A           91 GYPTIKILKKGQAVDYDGSRTQEEIVAKVREVSQPDWTPP  130 (140)
T ss_dssp             SSSEEEEEETTEEEECCSCCCHHHHHHHHHHHHSSSCCCC
T ss_pred             ccCeEEEEECCcEEEcCCCCCHHHHHHHHHHhcCCCCCCC
Confidence            9999999999996679999999999999999998766543

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.88  E-value=7.8e-22  Score=170.85  Aligned_cols=203  Identities=18%  Similarity=0.250  Sum_probs=167.3

Q ss_pred             CCceecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEc
Q 017971          151 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQ  225 (363)
Q Consensus       151 ~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~  225 (363)
                      ..+++|++..+++++++.++   +++|+|+.+.     +.+.++|..+. .+.|+.  +.++++++.++++. |++++|+
T Consensus         9 ~~~~~l~s~~~~~~~l~~~~---v~vVgff~~~~~~~~~~f~~~A~~l~-~~~F~~--t~~~~v~~~~~v~~-p~i~lfk   81 (227)
T 4f9z_D            9 QEPTWLTDVPAAMEFIAATE---VAVIGFFQDLEIPAVPILHSMVQKFP-GVSFGI--STDSEVLTHYNITG-NTICLFR   81 (227)
T ss_dssp             CCCEECCSHHHHHHHHHTSS---EEEEEECSCSCSTHHHHHHHHTTTCT-TSEEEE--ECCHHHHHHTTCCS-SEEEEEE
T ss_pred             CCCeeeCCHHHHHHHHhcCC---eEEEEEecCCCchhHHHHHHHHHhCC-CceEEE--ECCHHHHHHcCCCC-CeEEEEE
Confidence            35778889899999998765   6889988542     45888888884 455543  55788999999987 9999999


Q ss_pred             CCCCCcccccC----CCCHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC
Q 017971          226 PSYNEHNIFYG----PFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR  301 (363)
Q Consensus       226 ~~~~~~~~~~g----~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~  301 (363)
                      +.++.+..|.|    .++.++|.+||+.++.|+++++|.+|+..+...+.|.+++++.+......+++.+.++++|++++
T Consensus        82 ~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k  161 (227)
T 4f9z_D           82 LVDNEQLNLEDEDIESIDATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQ  161 (227)
T ss_dssp             TTTTEEEEECHHHHHTCCHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTT
T ss_pred             ecCcccccccccccCCCCHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhh
Confidence            76666667774    78999999999999999999999999999998888888776655445567788999999999999


Q ss_pred             C-cEEEEEecc--CchhHHhhcCCCCCCCCCeEEEEeCC-CCeeEE-EEEEeehhhhhHhhhhhc
Q 017971          302 E-LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGN-ENYLTV-SINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       302 ~-~~f~~vd~~--~~~~~~~~~gi~~~~~~P~~vi~~~~-~~y~~~-~~~~~~~~~~~~~~~~~~  361 (363)
                      + +.|+|+|+.  ++...++.||+ ...++|+++|++.. +++|.+ .++++.+.|..||..+|.
T Consensus       162 ~~i~F~~vd~~~~~~~~~l~~fgl-~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          162 GKILFILVDSGMKENGKVISFFKL-KESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             TTCEEEEEETTSGGGHHHHHHTTC-CGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCccHhHHHHHHHcCC-CcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence            8 999999996  47789999999 45689999999976 445554 478999999999999985

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.87  E-value=2.3e-21  Score=146.59  Aligned_cols=99  Identities=29%  Similarity=0.643  Sum_probs=87.1

Q ss_pred             eEEc-ChhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           45 VIEL-DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        45 v~~l-~~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      |.++ |.++|++.+.  ++++++|.|||+||++|+.+.|.|+++++.+.    ++.|+.||+++++++|++|+|.++||+
T Consensus         2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~~~~l~~~~~V~~~PT~   77 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS----DVVFLKVDVDECEDIAQDNQIACMPTF   77 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TEEEEEEETTTCHHHHHHTTCCBSSEE
T ss_pred             eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC----CeEEEEEecccCHHHHHHcCCCeecEE
Confidence            4555 4578999884  36799999999999999999999999998764    389999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971          122 KIFMHGIPTE-YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~  148 (363)
                      ++|++|+.+. +.| .+.+.|.+|+.++
T Consensus        78 ~~~~~G~~v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           78 LFMKNGQKLDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             EEEETTEEEEEEES-CCHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeC-cCHHHHHHHHHhc
Confidence            9999999875 677 6899999999875

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.87  E-value=1.2e-19  Score=168.18  Aligned_cols=296  Identities=14%  Similarity=0.175  Sum_probs=226.7

Q ss_pred             CCCeEEc-ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           42 DGKVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        42 ~~~v~~l-~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      ...+..+ +.++++++++.++.++|.|+.+-+..+   ...|.++|+.+.    ++.|+.+   .++++|+++++.. |+
T Consensus        16 ~~~~~~l~~~~~~~~~~~~~~~~vvgff~~~~~~~---~~~f~~~A~~~~----~~~F~~t---~~~~v~~~~~v~~-~~   84 (361)
T 3uem_A           16 SEFATTLPDGAAAESLVESSEVAVIGFFKDVESDS---AKQFLQAAEAID----DIPFGIT---SNSDVFSKYQLDK-DG   84 (361)
T ss_dssp             CSSSEECCSHHHHHHHHHTSSEEEEEECSCTTSHH---HHHHHHHHHHCS----SSCEEEE---CCHHHHHHTTCSS-SE
T ss_pred             cccceecCCHHHHHHHHhcCCcEEEEEEcCCCchH---HHHHHHHHhcCC----CceEEEE---CcHHHHHHhCCCC-Ce
Confidence            3456777 558899999988999999998776544   578999998773    2777744   5789999999998 99


Q ss_pred             EEEEeC--CEEEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCC-h-------hHHHHHH
Q 017971          121 LKIFMH--GIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-E-------SVMSNLA  190 (363)
Q Consensus       121 ~~~~~~--g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~-~-------~~~~~~a  190 (363)
                      +.+|+.  +..+.|.|..+.+.|.+|+.....|.+.+++.+ ++..+......  ++++.|+.. .       +.++++|
T Consensus        85 i~lfk~f~~~~~~~~g~~~~~~i~~fi~~~~~p~v~~~~~~-~~~~~~~~~~~--~~~v~F~~~~~~~~~~~~~~~~~~A  161 (361)
T 3uem_A           85 VVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQ-TAPKIFGGEIK--THILLFLPKSVSDYDGKLSNFKTAA  161 (361)
T ss_dssp             EEEEESSTTSEEECCSCCCHHHHHHHHHHHSSCSEEECSTT-THHHHHSCSCC--EEEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             EEEEEecCCCccccCCcCCHHHHHHHHHHcCCCcceecCcc-cHHHHhcCCCC--cEEEEEEeCCchhHHHHHHHHHHHH
Confidence            999987  667889999999999999999999999999875 47777765543  455655532 1       3477888


Q ss_pred             HHhhhhhHHHHhh-h--cchhhhhhcCCCC--CCeEEEEcCCCCCccccc---CCCCHHHHHHHHHhhcC----------
Q 017971          191 LKYKKKAWFAVAK-D--FSEDTMVLYDFDK--VPALVALQPSYNEHNIFY---GPFDEEFLEEFIKQNFL----------  252 (363)
Q Consensus       191 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~--~p~iv~~~~~~~~~~~~~---g~~~~~~l~~fi~~~~~----------  252 (363)
                      ..+++...|..+. +  ....+++.||+..  .|+++++..+. ....|.   |..+.+.|.+|+++...          
T Consensus       162 ~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~-~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~  240 (361)
T 3uem_A          162 ESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE-EMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQ  240 (361)
T ss_dssp             GGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC---CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCC
T ss_pred             HHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCC-cccccCCCccccCHHHHHHHHHHHhcCCCcccccCC
Confidence            8888776555442 2  3577899999987  99999998632 233443   78899999999988521          


Q ss_pred             --------CCcccCChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchhHHhhc
Q 017971          253 --------PLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTF  320 (363)
Q Consensus       253 --------p~~~~lt~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~~~~~  320 (363)
                              ..+..++..++..+. ..++++++.|+. .-....+.+...+.++|..+++   +.++.+|+..+.  ++.+
T Consensus       241 ~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a-~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~  317 (361)
T 3uem_A          241 ELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYA-PWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAV  317 (361)
T ss_dssp             CCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSC
T ss_pred             CCCcccccCCcEEeecCchhhhcccCCCcEEEEEec-CcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhc
Confidence                    125567788888765 456667666664 4677778899999999998875   999999998765  6788


Q ss_pred             CCCCCCCCCeEEEEeCC-C-CeeEEEEEEeehhhhhHhhh
Q 017971          321 EANKKSKLPKMVVWDGN-E-NYLTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       321 gi~~~~~~P~~vi~~~~-~-~y~~~~~~~~~~~~~~~~~~  358 (363)
                      ++   ...|++++++.+ | .....+|....+.+..|+.+
T Consensus       318 ~v---~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~  354 (361)
T 3uem_A          318 KV---HSFPTLKFFPASADRTVIDYNGERTLDGFKKFLES  354 (361)
T ss_dssp             CC---CSSSEEEEECSSSSCCCEECCSCSSHHHHHHHHTT
T ss_pred             CC---cccCeEEEEECCCCcceeEecCCCCHHHHHHHHHh
Confidence            88   679999999655 3 46777888888888888865

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.86  E-value=9.2e-22  Score=152.49  Aligned_cols=115  Identities=42%  Similarity=0.712  Sum_probs=104.9

Q ss_pred             cCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           39 FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      +..++.+..+++++|++.+.++++++|.||++||++|+++.|.|.++++.+++.+.++.++.+||+++++++++|+|.++
T Consensus         3 ~~~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~   82 (120)
T 1mek_A            3 PEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY   82 (120)
T ss_dssp             CCEETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSS
T ss_pred             ccCCCCcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcc
Confidence            45567899999999999998889999999999999999999999999998876556799999999999999999999999


Q ss_pred             CEEEEEeCCEE---EeecCCCCHHHHHHHHHhhcCCCc
Q 017971          119 PTLKIFMHGIP---TEYYGPRKAELLVRYLKKFVAPDV  153 (363)
Q Consensus       119 Pt~~~~~~g~~---~~y~g~~~~~~i~~~i~~~~~~~v  153 (363)
                      |++++|++|+.   ..|.|.++.+.|.+|+.+.+++++
T Consensus        83 Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  120 (120)
T 1mek_A           83 PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPAA  120 (120)
T ss_dssp             SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCCC
T ss_pred             cEEEEEeCCCcCCcccccCccCHHHHHHHHHhccCCCC
Confidence            99999999875   468999999999999999988764

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.85  E-value=1.5e-20  Score=143.73  Aligned_cols=106  Identities=18%  Similarity=0.278  Sum_probs=97.7

Q ss_pred             CCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           42 DGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      ...+..+++++|++.+ +++++++|.||++||++|+.+.|.+.++++.+.+   ++.|+.+|++++++++++|+|.++||
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt   79 (111)
T 3gnj_A            3 AMSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE---SFGFYYVDVEEEKTLFQRFSLKGVPQ   79 (111)
T ss_dssp             CCCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTCHHHHHHTTCCSSCE
T ss_pred             CCcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC---ceEEEEEECCcChhHHHhcCCCcCCE
Confidence            4578999999999999 7889999999999999999999999999988754   49999999999999999999999999


Q ss_pred             EEEEeCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          121 LKIFMHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       121 ~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +++|++|+.+ .+.|..+.+.+.+|+.+.++
T Consensus        80 ~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           80 ILYFKDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEEEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            9999999876 58999999999999988753

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.85  E-value=1.5e-20  Score=143.65  Aligned_cols=106  Identities=35%  Similarity=0.595  Sum_probs=96.1

Q ss_pred             CCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      .+.+..+++++|++.+. +++++|.||++||++|+.+.|.|.++++.+......+.++.+||++++++|++|+|.++||+
T Consensus         4 ~~~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (111)
T 3uvt_A            4 GSTVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL   82 (111)
T ss_dssp             -CCSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCcceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEE
Confidence            46799999999999998 68999999999999999999999999987654445699999999999999999999999999


Q ss_pred             EEEeCCEEE-eecCCCCHHHHHHHHHhh
Q 017971          122 KIFMHGIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       122 ~~~~~g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                      ++|++|+.+ .|.|..+.+.|.+|+.++
T Consensus        83 ~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           83 LLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            999999876 589999999999999875

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=1.9e-20  Score=146.70  Aligned_cols=113  Identities=26%  Similarity=0.493  Sum_probs=101.4

Q ss_pred             CCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           41 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      ..+.++.+++++|++.+++  .++|.||++||++|+++.|.|.++++.+.+.  ++.|+.|||+++++++++|+|.++||
T Consensus         5 ~~~~v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt   80 (126)
T 1x5e_A            5 SSGNVRVITDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDL--EVNIAKVDVTEQPGLSGRFIINALPT   80 (126)
T ss_dssp             CCCSEEECCTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGG--TCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCccEEecHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECcCCHHHHHHcCCcccCE
Confidence            3578999999999998764  3999999999999999999999999987642  49999999999999999999999999


Q ss_pred             EEEEeCCEEEeecCCCCHHHHHHHHHhhcCCCceecC
Q 017971          121 LKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILN  157 (363)
Q Consensus       121 ~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v~~i~  157 (363)
                      +++|++|+...|.|..+.+.|.+|+.+.+.+.+..+.
T Consensus        81 ~~~~~~G~~~~~~G~~~~~~l~~~l~~~~~~~~~~~~  117 (126)
T 1x5e_A           81 IYHCKDGEFRRYQGPRTKKDFINFISDKEWKSIEPVS  117 (126)
T ss_dssp             EEEEETTEEEECCSCCCHHHHHHHHHTCGGGGSCEEC
T ss_pred             EEEEeCCeEEEeecCCCHHHHHHHHHHHhhccCCCch
Confidence            9999999977899999999999999999877666554

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.85  E-value=2.3e-20  Score=161.83  Aligned_cols=191  Identities=12%  Similarity=0.069  Sum_probs=140.5

Q ss_pred             hhHHHhH--cCCCeEEEEEE-----CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971           51 SNFDSAI--SSFDYILVDFY-----APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI  123 (363)
Q Consensus        51 ~~f~~~l--~~~~~~lv~fy-----~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  123 (363)
                      +.+++.+  +..++++|.||     +|||+||+++.|+|.++++.+.+ .+++.++.|||++++++|++|+|+++||+++
T Consensus         9 ~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~-~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~   87 (229)
T 2ywm_A            9 MQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVG-QDKIKLDIYSPFTHKEETEKYGVDRVPTIVI   87 (229)
T ss_dssp             HHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHC-TTTEEEEEECTTTCHHHHHHTTCCBSSEEEE
T ss_pred             HHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCC-CCceEEEEecCcccHHHHHHcCCCcCcEEEE
Confidence            4455556  34466666666     89999999999999999988754 3459999999999999999999999999999


Q ss_pred             EeCCE-EEeecCCCCHHHHHHHHHhhcC--CCceecCChHHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHH
Q 017971          124 FMHGI-PTEYYGPRKAELLVRYLKKFVA--PDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALK  192 (363)
Q Consensus       124 ~~~g~-~~~y~g~~~~~~i~~~i~~~~~--~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~  192 (363)
                      |++|. ..+|.|.++.+++.+|+.....  ..+..++. ..++.+......  ++++.|+..+        +.+..++..
T Consensus        88 ~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~--~~~v~F~a~wC~~C~~~~~~~~~~~~~  164 (229)
T 2ywm_A           88 EGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSE-KTLELLQVVDIP--IEIWVFVTTSCGYCPSAAVMAWDFALA  164 (229)
T ss_dssp             ESSSCCCEEEESCCCTTHHHHHHHHHHHHHTTCCSCCH-HHHHHHTTCCSC--EEEEEEECTTCTTHHHHHHHHHHHHHH
T ss_pred             ECCCcccceecCCccHHHHHHHHHHHHhccCCccCCCH-HHHHHHHhcCCC--eEEEEEECCCCcchHHHHHHHHHHHHH
Confidence            98654 5679999999999999988753  44555644 567777643331  3355565442        235555555


Q ss_pred             hhhhhHH-HHhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh
Q 017971          193 YKKKAWF-AVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN  250 (363)
Q Consensus       193 ~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~  250 (363)
                      +. ...+ .+..+..++++..|++.++|++++ .   +....+.|..+.++|.+|+.+.
T Consensus       165 ~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~-~---G~~~~~~G~~~~~~l~~~l~~~  218 (229)
T 2ywm_A          165 ND-YITSKVIDASENQDLAEQFQVVGVPKIVI-N---KGVAEFVGAQPENAFLGYIMAV  218 (229)
T ss_dssp             CT-TEEEEEEEGGGCHHHHHHTTCCSSSEEEE-G---GGTEEEESCCCHHHHHHHHHHH
T ss_pred             CC-CeEEEEEECCCCHHHHHHcCCcccCEEEE-C---CEEEEeeCCCCHHHHHHHHHHH
Confidence            52 2222 222344677899999999999888 2   3445588999999999999875

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.84  E-value=3e-20  Score=142.49  Aligned_cols=105  Identities=28%  Similarity=0.502  Sum_probs=97.0

Q ss_pred             CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971           44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI  123 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  123 (363)
                      .++++++++|++.+ ++++++|.||++||++|+++.|.+.++++.+.+   ++.++.+|++++++++++|+|.++|++++
T Consensus         2 ~v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   77 (112)
T 2voc_A            2 AIVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD---KLKIVKIDVDENQETAGKYGVMSIPTLLV   77 (112)
T ss_dssp             CCEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT---TCEEEEEETTTCCSHHHHTTCCSBSEEEE
T ss_pred             CeEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CcEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence            46889999999999 889999999999999999999999999998764   39999999999999999999999999999


Q ss_pred             EeCCEEE-eecCCCCHHHHHHHHHhhcCCC
Q 017971          124 FMHGIPT-EYYGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       124 ~~~g~~~-~y~g~~~~~~i~~~i~~~~~~~  152 (363)
                      |++|+.+ .+.|..+.+.+.+|+.+..+++
T Consensus        78 ~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  107 (112)
T 2voc_A           78 LKDGEVVETSVGFKPKEALQELVNKHLLEH  107 (112)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHTTSCSC
T ss_pred             EeCCEEEEEEeCCCCHHHHHHHHHHHHHhh
Confidence            9999876 5899999999999999998765

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.84  E-value=4.2e-20  Score=140.56  Aligned_cols=105  Identities=26%  Similarity=0.494  Sum_probs=97.5

Q ss_pred             CCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      .+.+..+++++|++.+.++++++|.||++||++|+.+.|.+.++++.+.+   ++.++.+|++++++++++|+|.++|++
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~i~~~Pt~   79 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG---KAVFGRLNVDENQKIADKYSVLNIPTT   79 (109)
T ss_dssp             CCCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC---CceEEEEccccCHHHHHhcCcccCCEE
Confidence            46789999999999998899999999999999999999999999998764   499999999999999999999999999


Q ss_pred             EEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          122 KIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|++|+.+ .+.|..+.+.|.+++.+.+
T Consensus        80 ~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           80 LIFVNGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence            999999876 4899999999999998875

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.83  E-value=9.8e-20  Score=147.95  Aligned_cols=111  Identities=32%  Similarity=0.555  Sum_probs=100.4

Q ss_pred             ccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           38 KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        38 ~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      .+.-.+.+.++++++|++.++++++++|.||++||++|+.+.|.|+++++.+.+.   +.|+.||++++++++++|+|.+
T Consensus        42 ~~~~~~~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~~l~~~~~i~~  118 (155)
T 2ppt_A           42 AGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAHPAVAGRHRIQG  118 (155)
T ss_dssp             CBSCCSSEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTSTHHHHHTTCCS
T ss_pred             ccccCCCCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCccHHHHHHcCCCc
Confidence            3444678999999999999977899999999999999999999999999988653   9999999999999999999999


Q ss_pred             CCEEEEEeCCEEE-eecCCCCHHHHHHHHHhhcCC
Q 017971          118 FPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       118 ~Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~~  151 (363)
                      +||+++|++|+.+ .+.|..+.+.|.+|+.+.++.
T Consensus       119 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          119 IPAFILFHKGRELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             CCEEEEEeCCeEEEEecCCCCHHHHHHHHHHHhcc
Confidence            9999999999876 489999999999999988764

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=8.2e-20  Score=144.32  Aligned_cols=110  Identities=40%  Similarity=0.684  Sum_probs=98.2

Q ss_pred             CCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhc-CCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK-LKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~-~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      ..+.+..+++++|++.+ +++++++|.||++||++|+++.|.|.++++.+.. ...++.|+.|||++++++|++|+|.++
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   84 (133)
T 1x5d_A            5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF   84 (133)
T ss_dssp             SCCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSS
T ss_pred             CCCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCee
Confidence            45789999999999976 6778999999999999999999999999998862 113499999999999999999999999


Q ss_pred             CEEEEEeCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          119 PTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       119 Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      |++++|.+|+.+ .|.|.++.+.|.+|+.+.+.
T Consensus        85 Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           85 PTIKIFQKGESPVDYDGGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             SEEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence            999999998754 59999999999999988764

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.83  E-value=2.7e-20  Score=159.24  Aligned_cols=119  Identities=30%  Similarity=0.549  Sum_probs=107.8

Q ss_pred             cccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC
Q 017971           37 TKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID  116 (363)
Q Consensus        37 ~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~  116 (363)
                      +.+.++..+..+++++|+..+.++++++|.||++||++|+.+.|.|+++++.+.+   .+.|+.|||++++++|++|+|.
T Consensus        91 g~~~~~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~---~v~~~~vd~~~~~~l~~~~~v~  167 (210)
T 3apq_A           91 GIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG---LLRIGAVNCGDDRMLCRMKGVN  167 (210)
T ss_dssp             STTTTCTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT---TBEEEEEETTTCHHHHHHTTCC
T ss_pred             cccCCCCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC---ceEEEEEECCccHHHHHHcCCC
Confidence            3456778899999999999998889999999999999999999999999998754   3999999999999999999999


Q ss_pred             cCCEEEEEeCCEEE-eecCCCCHHHHHHHHHhhcCCCceecCC
Q 017971          117 AFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVAPDVSILNS  158 (363)
Q Consensus       117 ~~Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~~~v~~i~~  158 (363)
                      ++||+++|++|+.+ .|.|.++.+.|.+|+.+.+.+.+.+|++
T Consensus       168 ~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~~~~~i~~  210 (210)
T 3apq_A          168 SYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELST  210 (210)
T ss_dssp             SSSEEEEECTTSCCEECCSCCCHHHHHHHHHHHHHCCSSCC--
T ss_pred             cCCeEEEEECCCceeEecCCCCHHHHHHHHHHhCcccceecCC
Confidence            99999999988754 5899999999999999999998888753

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.83  E-value=7.6e-20  Score=138.43  Aligned_cols=102  Identities=34%  Similarity=0.527  Sum_probs=94.6

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      ..+.++++++|++.+ ++++++|.||++||++|+.+.|.+.++++.+.+.   +.++.+|++++++++++|+|.++|+++
T Consensus         3 ~~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~v~~~Pt~~   78 (106)
T 3die_A            3 MAIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDENPSTAAKYEVMSIPTLI   78 (106)
T ss_dssp             CCCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCHHHHHHTTCCSBSEEE
T ss_pred             cceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcCHHHHHhCCCcccCEEE
Confidence            468999999999999 8899999999999999999999999999987643   999999999999999999999999999


Q ss_pred             EEeCCEEE-eecCCCCHHHHHHHHHhh
Q 017971          123 IFMHGIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       123 ~~~~g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                      +|++|+.+ .+.|..+.+.+.+|+.+.
T Consensus        79 ~~~~G~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           79 VFKDGQPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             EEeCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            99999876 589999999999999875

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.83  E-value=1.2e-19  Score=137.91  Aligned_cols=104  Identities=35%  Similarity=0.585  Sum_probs=94.6

Q ss_pred             CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +.|..+++++|++.+ +++++++|.||++||++|+.+.|.++++++.+.+   ++.++.+|++++++++++|+|.++|++
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~   78 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTL   78 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTCTTHHHHTTCCSSSEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC---CcEEEEEECCCCHHHHHHcCCcccCEE
Confidence            568999999999765 6778999999999999999999999999988754   399999999999999999999999999


Q ss_pred             EEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          122 KIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|++|+.+ .+.|..+.+.+.+|+.+.+
T Consensus        79 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           79 LLFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            999999876 4899999999999998765

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.83  E-value=4.3e-20  Score=159.74  Aligned_cols=192  Identities=18%  Similarity=0.219  Sum_probs=142.0

Q ss_pred             hhHHHhH---cCCCeEEEEEECC-CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCCEEEEE
Q 017971           51 SNFDSAI---SSFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        51 ~~f~~~l---~~~~~~lv~fy~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~  124 (363)
                      +.+++.+   .+++.+++.||++ ||++|+++.|.|+++++.    .+++.++.+||++  ++++|++|+|.++||+++|
T Consensus        10 ~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~----~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~   85 (226)
T 1a8l_A           10 KVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL----TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTIT   85 (226)
T ss_dssp             HHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT----CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh----CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEE
Confidence            4556666   2346778999999 999999999999999853    2359999999999  9999999999999999999


Q ss_pred             eCCEE--EeecCCCCHHHHHHHHHhhcC--CCceecCChHHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHH
Q 017971          125 MHGIP--TEYYGPRKAELLVRYLKKFVA--PDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALK  192 (363)
Q Consensus       125 ~~g~~--~~y~g~~~~~~i~~~i~~~~~--~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~  192 (363)
                      ++|+.  ..|.|.+..+.+.+|+.....  .....+ +...++.+......  ++++.|+..+        +.+.+++..
T Consensus        86 ~~g~~~~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l-~~~~~~~~~~~~~~--~~~v~F~a~wC~~C~~~~p~~~~l~~~  162 (226)
T 1a8l_A           86 QDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETNL-MDETKQAIRNIDQD--VRILVFVTPTCPYCPLAVRMAHKFAIE  162 (226)
T ss_dssp             ETTBCCSEEEESCCCTTHHHHHHHHHHHHHHTCCCC-CHHHHHHHTTCCSC--EEEEEEECSSCTTHHHHHHHHHHHHHH
T ss_pred             cCCceeeEEEeccCcHHHHHHHHHHHHhhcCCCCCC-CHHHHHHHHhcCCC--cEEEEEeCCCCCccHHHHHHHHHHHHh
Confidence            98864  579999999999999988653  233444 33456665433331  3366666442        346666666


Q ss_pred             hh----hhhHHH-HhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh
Q 017971          193 YK----KKAWFA-VAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN  250 (363)
Q Consensus       193 ~~----~~~~~~-~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~  250 (363)
                      +.    +...+. +..+.+..+...|++.++|++++++.+ +....+.|..+.++|.+||++.
T Consensus       163 ~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~  224 (226)
T 1a8l_A          163 NTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNG-EDRVEFEGAYPEKMFLEKLLSA  224 (226)
T ss_dssp             HHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred             cccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCC-ceeEEEcCCCCHHHHHHHHHHh
Confidence            65    222222 223445778999999999999998742 3456788999999999999874

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=4.6e-20  Score=145.26  Aligned_cols=113  Identities=37%  Similarity=0.662  Sum_probs=100.2

Q ss_pred             ccccccCCCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh
Q 017971           34 EEETKFKIDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK  112 (363)
Q Consensus        34 ~~~~~~~~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~  112 (363)
                      +....+...+.+..+++++|++.+ +++++++|.||++||++|+++.|.|.++++.+.+   .+.++.+||++++++|++
T Consensus         8 ~~~~l~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~l~~~   84 (130)
T 2dml_A            8 AVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD---VVKVGAVNADKHQSLGGQ   84 (130)
T ss_dssp             CCCCSSCTTSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT---TSEEEEEETTTCHHHHHH
T ss_pred             ccccccCCCCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC---ceEEEEEeCCCCHHHHHH
Confidence            334556677889999999999965 6778999999999999999999999999988764   399999999999999999


Q ss_pred             CCcCcCCEEEEEeCCE--EEeecCCCCHHHHHHHHHhhc
Q 017971          113 QEIDAFPTLKIFMHGI--PTEYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       113 ~~i~~~Pt~~~~~~g~--~~~y~g~~~~~~i~~~i~~~~  149 (363)
                      |+|.++||+++|.+|.  ...|.|.++.+.+.+|+.+.+
T Consensus        85 ~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           85 YGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSAL  123 (130)
T ss_dssp             HTCCSSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred             cCCCccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence            9999999999998765  457999999999999998875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.83  E-value=9.7e-20  Score=138.46  Aligned_cols=106  Identities=29%  Similarity=0.584  Sum_probs=95.8

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      +.+.++++++|+++++++++++|.||++||++|+.+.|.+.++++.+.+   ++.++.+|++++++++++|++.++|+++
T Consensus         1 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   77 (109)
T 2yzu_A            1 AKPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG---KLLVAKLDVDENPKTAMRYRVMSIPTVI   77 (109)
T ss_dssp             -CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT---TBEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CcceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC---ceEEEEEECCCCHhHHHhCCCCcCCEEE
Confidence            3578999999999888889999999999999999999999999988764   3999999999999999999999999999


Q ss_pred             EEeCCEEE-eecCCCCHHHHHHHHHhhcCC
Q 017971          123 IFMHGIPT-EYYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       123 ~~~~g~~~-~y~g~~~~~~i~~~i~~~~~~  151 (363)
                      +|++|+.+ .+.|..+.+.+.+|+.+.++.
T Consensus        78 ~~~~g~~~~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           78 LFKDGQPVEVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHTTC--
T ss_pred             EEeCCcEeeeEeCCCCHHHHHHHHHHHhhh
Confidence            99999876 489999999999999988753

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.83  E-value=9.6e-20  Score=149.28  Aligned_cols=114  Identities=13%  Similarity=0.232  Sum_probs=97.7

Q ss_pred             CCCeEEcChhhHHHhHcC--CCeEEEEEEC-------CCChhhhhHHHHHHHHHHHhhcCC--CCeEEEEEeCccchhhh
Q 017971           42 DGKVIELDESNFDSAISS--FDYILVDFYA-------PWCGHCKRLAPQLDEAAPILAKLK--EPIVIAKVDADKYSRLA  110 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~--~~~~lv~fy~-------~~C~~C~~~~~~~~~~a~~~~~~~--~~v~~~~vd~~~~~~l~  110 (363)
                      .+.|++||+++|++.+..  +.+++|.|||       +||++|+.+.|+|+++|+.+.+..  +++.|++||++++++++
T Consensus        17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la   96 (178)
T 3ga4_A           17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV   96 (178)
T ss_dssp             TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred             cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence            467999999999998854  4579999999       499999999999999999986211  35999999999999999


Q ss_pred             hhCCcCcCCEEEEEeCCE--E-----------Eee---cC-CCCHHHHHHHHHhhcCCCcee
Q 017971          111 SKQEIDAFPTLKIFMHGI--P-----------TEY---YG-PRKAELLVRYLKKFVAPDVSI  155 (363)
Q Consensus       111 ~~~~i~~~Pt~~~~~~g~--~-----------~~y---~g-~~~~~~i~~~i~~~~~~~v~~  155 (363)
                      ++|+|+++||+++|++|.  .           ..|   .| .++++.|.+|+.+.++..+..
T Consensus        97 ~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i~I  158 (178)
T 3ga4_A           97 KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISITV  158 (178)
T ss_dssp             HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCCCC
T ss_pred             HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCccc
Confidence            999999999999999874  1           345   35 899999999999999866643

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.83  E-value=8.4e-20  Score=138.06  Aligned_cols=102  Identities=34%  Similarity=0.597  Sum_probs=93.5

Q ss_pred             eEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971           45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        45 v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      |+++++++|++.++++++++|.||++||++|+.+.|.++++++.+.+   ++.++.+|++++++++++|+|.++|++++|
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   78 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD---KVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT---TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECcCCHHHHHHcCCccccEEEEE
Confidence            68899999998888889999999999999999999999999988754   399999999999999999999999999999


Q ss_pred             eCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          125 MHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       125 ~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|+.+ .+.|..+.+.+.+++.+.+
T Consensus        79 ~~G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           79 KGGRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             eCCeEEEEEecCCCHHHHHHHHHHHh
Confidence            999866 4899999999999987754

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.83  E-value=1.3e-19  Score=146.14  Aligned_cols=112  Identities=24%  Similarity=0.483  Sum_probs=101.9

Q ss_pred             cccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC
Q 017971           37 TKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID  116 (363)
Q Consensus        37 ~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~  116 (363)
                      +.+...+.+..+++++|++.+.++++++|.||++||++|+++.|.|+++++.+.+   ++.|+.||++++++++++|+|.
T Consensus        32 ~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~v~  108 (148)
T 3p2a_A           32 GHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG---KVRFVKVNTEAEPALSTRFRIR  108 (148)
T ss_dssp             CCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTCHHHHHHTTCC
T ss_pred             CCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC---ceEEEEEECcCCHHHHHHCCCC
Confidence            3444678899999999999998889999999999999999999999999988754   3999999999999999999999


Q ss_pred             cCCEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhcCC
Q 017971          117 AFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       117 ~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~  151 (363)
                      ++||+++|++|+.+. |.|..+.+.|.+|+.+.+..
T Consensus       109 ~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A          109 SIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             SSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred             ccCEEEEEECCeEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            999999999998764 89999999999999988653

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.82  E-value=5.6e-20  Score=143.42  Aligned_cols=105  Identities=15%  Similarity=0.131  Sum_probs=94.4

Q ss_pred             CCCeEEcChhhHHHhHcCCC-eEEEEEECCCC--hhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           42 DGKVIELDESNFDSAISSFD-YILVDFYAPWC--GHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~~-~~lv~fy~~~C--~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      +.....+|+++|++.+.+.+ +++|.|||+||  ++|+.+.|.++++++++.+   ++.|++||.+++++++++|+|+++
T Consensus        14 ~~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~---~v~~~KVdvDe~~~la~~ygV~si   90 (137)
T 2qsi_A           14 PNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG---RLVAAEVAAEAERGLMARFGVAVC   90 (137)
T ss_dssp             ---CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT---TEEEEEECGGGHHHHHHHHTCCSS
T ss_pred             hcCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC---CcEEEEEECCCCHHHHHHcCCccC
Confidence            45567999999999986665 99999999999  9999999999999998754   499999999999999999999999


Q ss_pred             CEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          119 PTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       119 Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      ||+++|++|+.+. ..|..+.+.|.+|+.+++
T Consensus        91 PTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           91 PSLAVVQPERTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             SEEEEEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             CEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            9999999999885 789999999999998776

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.82  E-value=1.4e-19  Score=143.79  Aligned_cols=108  Identities=35%  Similarity=0.558  Sum_probs=98.1

Q ss_pred             CCCCeEEcChhhHHHhHc------------CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh
Q 017971           41 IDGKVIELDESNFDSAIS------------SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR  108 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l~------------~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~  108 (363)
                      ....++.+++++|.+.+.            ++++++|.||++||++|+++.|.+.++++.+.+   ++.++.|||+++++
T Consensus         7 ~~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~~~   83 (136)
T 2l5l_A            7 GNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG---QIVIYKVDTEKEQE   83 (136)
T ss_dssp             CTTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTCHH
T ss_pred             cCCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC---CEEEEEEeCCCCHH
Confidence            356799999999999885            468999999999999999999999999988754   39999999999999


Q ss_pred             hhhhCCcCcCCEEEEE-eCCEEEeecCCCCHHHHHHHHHhhcCC
Q 017971          109 LASKQEIDAFPTLKIF-MHGIPTEYYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       109 l~~~~~i~~~Pt~~~~-~~g~~~~y~g~~~~~~i~~~i~~~~~~  151 (363)
                      ++++|+|.++||+++| ++|+.+.+.|..+.+.|.+|+.+....
T Consensus        84 l~~~~~v~~~Pt~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           84 LAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             HHHHTTCCSSCEEEEECSSSCCEEEESCCCHHHHHHHHHHHHTS
T ss_pred             HHHHcCCCCCCEEEEECCCCcEEEEeCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999 788887899999999999999988753

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.82  E-value=2.3e-19  Score=135.96  Aligned_cols=103  Identities=26%  Similarity=0.532  Sum_probs=94.4

Q ss_pred             CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +.+..+++++|++.+ +++++++|.||++||++|+.+.|.+.++++.+.+   ++.++.+|++++++++++|+|.++|++
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~   78 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG---KVTVAKVNIDDNPETPNAYQVRSIPTL   78 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT---SEEEEEEETTTCCHHHHHTTCCSSSEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC---cEEEEEEECCCCHHHHHhcCCCccCEE
Confidence            468999999999876 6778999999999999999999999999998764   499999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971          122 KIFMHGIPTE-YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~  148 (363)
                      ++|++|+.+. +.|..+.+.+.+|+.+.
T Consensus        79 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           79 MLVRDGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             EEEeCCEEEEEecCCCCHHHHHHHHHhc
Confidence            9999998764 89999999999999875

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.82  E-value=8.9e-20  Score=145.75  Aligned_cols=109  Identities=36%  Similarity=0.530  Sum_probs=95.6

Q ss_pred             cCCCCCeEEcChhhHHHhHcC------------CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 017971           39 FKIDGKVIELDESNFDSAISS------------FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY  106 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~------------~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~  106 (363)
                      ....+.+..+++++|++.+..            +++++|.||++||++|+.+.|.|.++++.+.+   ++.++.|||+++
T Consensus        18 ~~~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~   94 (141)
T 3hxs_A           18 EKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKE   94 (141)
T ss_dssp             -----CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT---TCEEEEEETTTC
T ss_pred             cCCCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---ceEEEEEECCCC
Confidence            445678999999999998853            78999999999999999999999999998764   399999999999


Q ss_pred             hhhhhhCCcCcCCEEEEE-eCCEEEeecCCCCHHHHHHHHHhhcC
Q 017971          107 SRLASKQEIDAFPTLKIF-MHGIPTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       107 ~~l~~~~~i~~~Pt~~~~-~~g~~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                      ++++++|+|.++|++++| ++|+...+.|..+.+.|.+|+.+.+.
T Consensus        95 ~~~~~~~~v~~~Pt~~~~~~~g~~~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           95 PELARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHHHHHTTCCSSSEEEEECSSSCCEEEESCCCHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCcCEEEEEeCCCCEEEEeCCCCHHHHHHHHHHHHc
Confidence            999999999999999999 56777789999999999999988764

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.82  E-value=1.1e-19  Score=145.16  Aligned_cols=106  Identities=25%  Similarity=0.459  Sum_probs=97.6

Q ss_pred             CCCeEEcChhhHH-HhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           42 DGKVIELDESNFD-SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        42 ~~~v~~l~~~~f~-~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      .+.+..+++++|+ .+++++++++|.||++||++|+++.|.|.++++.+.+   ++.|+.|||++++++|++|+|.++||
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt   81 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS---SAVFGRINIATNPWTAEKYGVQGTPT   81 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT---TSEEEEEETTTCHHHHHHHTCCEESE
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCcCHhHHHHCCCCcCCE
Confidence            5689999999999 5567789999999999999999999999999998865   39999999999999999999999999


Q ss_pred             EEEEeCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          121 LKIFMHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       121 ~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +++|++|+.+ .|.|..+.+.|.+|+.+.+.
T Consensus        82 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           82 FKFFCHGRPVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             EEEEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEEeCCcEEEEEcCCCCHHHHHHHHHHHhc
Confidence            9999999876 58999999999999998864

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.82  E-value=1.5e-19  Score=143.11  Aligned_cols=102  Identities=15%  Similarity=0.189  Sum_probs=89.8

Q ss_pred             eEEcC-hhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           45 VIELD-ESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        45 v~~l~-~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +..|+ .++|++.+  +++++++|.|||+||++|+...|.++++|+++.+.   +.|++||.+++++++++|+|.+.||+
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe~~e~a~~y~V~siPT~   99 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEVPDFNTMYELYDPVSV   99 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCCTTTTTTTCCSSEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCCCHHHHHHcCCCCCCEE
Confidence            56665 48899877  36789999999999999999999999999988654   99999999999999999999999999


Q ss_pred             EEEeCCEEE----------eecCCCC-HHHHHHHHHhhc
Q 017971          122 KIFMHGIPT----------EYYGPRK-AELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~g~~~----------~y~g~~~-~~~i~~~i~~~~  149 (363)
                      ++|++|+.+          +..|..+ .++|++++....
T Consensus       100 ~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A          100 MFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             EEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            999999987          4678776 888888887664

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.82  E-value=9.3e-20  Score=140.65  Aligned_cols=103  Identities=25%  Similarity=0.489  Sum_probs=92.2

Q ss_pred             CCCeEEcChhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           42 DGKVIELDESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      .......+.++|++++.  ++++++|.||++||++|+++.|.|+++++.+.+    +.|+.||++++++++++|+|.++|
T Consensus        11 ~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~~~l~~~~~v~~~P   86 (116)
T 3qfa_C           11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDDCQDVASECEVKSMP   86 (116)
T ss_dssp             -CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT----SEEEEEETTTTHHHHHHTTCCSSS
T ss_pred             CcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCHHHHHHcCCcccc
Confidence            45667788999999997  789999999999999999999999999977643    999999999999999999999999


Q ss_pred             EEEEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          120 TLKIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       120 t~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      |+++|++|+.+ .+.|. +.+.|.+++.+.+
T Consensus        87 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           87 TFQFFKKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             EEEEESSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEEeCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence            99999999766 48898 9999999998753

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.81  E-value=2.4e-19  Score=140.80  Aligned_cols=104  Identities=34%  Similarity=0.549  Sum_probs=94.6

Q ss_pred             CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +.+..+++++|++.+ +++++++|.||++||++|+++.|.|+++++.+.+   ++.|+.|||+++++++++|+|.++||+
T Consensus        22 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~   98 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTL   98 (128)
T ss_dssp             CCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT---TEEEEEEETTTCCTTSGGGTCCSSSEE
T ss_pred             cccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHcCCCccCEE
Confidence            458999999999765 7789999999999999999999999999988754   399999999999999999999999999


Q ss_pred             EEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          122 KIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|++|+.+ .+.|..+.+.|.+|+.+.+
T Consensus        99 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           99 LLFKNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            999999876 4899999999999998764

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.81  E-value=2.7e-19  Score=134.65  Aligned_cols=102  Identities=32%  Similarity=0.592  Sum_probs=94.1

Q ss_pred             eEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971           45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        45 v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      |+++++++|++.++++++++|.||++||++|+.+.|.+.++++.+.+    +.++.+|++++++++++|++.++|++++|
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   76 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDENPDIAARYGVMSLPTVIFF   76 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCHHHHHHTTCCSSCEEEEE
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCCCHHHHHhCCccccCEEEEE
Confidence            57899999999998889999999999999999999999999987643    99999999999999999999999999999


Q ss_pred             eCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          125 MHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       125 ~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      ++|+.+ .+.|..+.+.+.+|+.+.++
T Consensus        77 ~~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           77 KDGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            999876 58999999999999988764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.81  E-value=1.9e-19  Score=157.10  Aligned_cols=112  Identities=43%  Similarity=0.783  Sum_probs=105.4

Q ss_pred             CCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      .+.+..++.++|++.++++++++|.||++||++|+.+.|.|.++++.+.+...++.++.+||++++++|++|+|.++||+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~  208 (241)
T 3idv_A          129 PEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTL  208 (241)
T ss_dssp             CCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEE
Confidence            45789999999999998889999999999999999999999999999987667799999999999999999999999999


Q ss_pred             EEEeCCEEEeecCCCCHHHHHHHHHhhcCCCc
Q 017971          122 KIFMHGIPTEYYGPRKAELLVRYLKKFVAPDV  153 (363)
Q Consensus       122 ~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~v  153 (363)
                      ++|++|+.+.|.|.++.+.|.+|+.+..++.+
T Consensus       209 ~~~~~g~~~~~~g~~~~~~l~~~l~~~~~~~~  240 (241)
T 3idv_A          209 KIFRKGRPYDYNGPREKYGIVDYMIEQSGAAA  240 (241)
T ss_dssp             EEEETTEEEECCSCCSHHHHHHHHHHHTTCTT
T ss_pred             EEEECCeEEEecCCCCHHHHHHHHHhhhCCCC
Confidence            99999999999999999999999999988764

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.81  E-value=6e-20  Score=143.81  Aligned_cols=108  Identities=14%  Similarity=0.113  Sum_probs=96.4

Q ss_pred             CeEEcChhhHHHhHcCCCeEEEEEECCC--ChhhhhHHHHHHHHHHHhhcCCCC-eEEEEEeCccchhhhhhCCcCcCCE
Q 017971           44 KVIELDESNFDSAISSFDYILVDFYAPW--CGHCKRLAPQLDEAAPILAKLKEP-IVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~--C~~C~~~~~~~~~~a~~~~~~~~~-v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      .+..+++++|++.+.++++++|.||++|  |++|+.+.|.++++++++.   ++ +.|++||.+++++++++|+|+++||
T Consensus        18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~---g~~v~~~KVdvDe~~~lA~~ygV~sIPT   94 (140)
T 2qgv_A           18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFP---DYTWQVAIADLEQSEAIGDRFGAFRFPA   94 (140)
T ss_dssp             TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCT---TSCCEEEECCHHHHHHHHHHHTCCSSSE
T ss_pred             CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcC---CCeEEEEEEECCCCHHHHHHcCCccCCE
Confidence            6789999999999987789999999999  9999999999999998764   35 9999999999999999999999999


Q ss_pred             EEEEeCCEEEe-ecCCCCHHHHHHHHHhhcCCCce
Q 017971          121 LKIFMHGIPTE-YYGPRKAELLVRYLKKFVAPDVS  154 (363)
Q Consensus       121 ~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~~v~  154 (363)
                      +++|++|+.+. ..|..+.+.|.+|+.+.+..+..
T Consensus        95 lilFk~G~~v~~~~G~~~k~~l~~~i~~~l~~~~~  129 (140)
T 2qgv_A           95 TLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE  129 (140)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHHC----
T ss_pred             EEEEECCEEEEEEecCCCHHHHHHHHHHHhcCCCC
Confidence            99999999885 78999999999999988764443

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.81  E-value=3.8e-19  Score=137.82  Aligned_cols=106  Identities=31%  Similarity=0.526  Sum_probs=95.9

Q ss_pred             CCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      ..+++..+++++|++.+ +.+++++|.||++||++|+++.|.+.++++.+.+   ++.++.+|++++++++++|+|.++|
T Consensus        11 ~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~P   87 (119)
T 1w4v_A           11 GSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG---KVVMAKVDIDDHTDLAIEYEVSAVP   87 (119)
T ss_dssp             CCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---SSEEEEEETTTTHHHHHHTTCCSSS
T ss_pred             CceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCCCCHHHHHHcCCCccc
Confidence            35689999999999866 6678999999999999999999999999987754   4999999999999999999999999


Q ss_pred             EEEEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          120 TLKIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       120 t~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++++|++|+.+ .+.|..+.+.|.+|+.+.+
T Consensus        88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            99999999866 5899999999999998765

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.81  E-value=5.5e-19  Score=135.72  Aligned_cols=106  Identities=22%  Similarity=0.468  Sum_probs=96.4

Q ss_pred             CCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           42 DGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      .+.|.++++++|++.+ ..+++++|.||++||++|+++.|.++++++.+.+   ++.++.+|++++++++++|+|.++|+
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~Pt   82 (115)
T 1thx_A            6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD---RLKVVKLEIDPNPTTVKKYKVEGVPA   82 (115)
T ss_dssp             CCSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT---TCEEEEEESTTCHHHHHHTTCCSSSE
T ss_pred             cCceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC---cEEEEEEEcCCCHHHHHHcCCCceeE
Confidence            3569999999999876 6778999999999999999999999999988754   39999999999999999999999999


Q ss_pred             EEEEeCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          121 LKIFMHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       121 ~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +++|++|+.+ .+.|..+.+.+.+|+.+.++
T Consensus        83 ~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           83 LRLVKGEQILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEcCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence            9999999876 48999999999999998765

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.81  E-value=4.5e-19  Score=135.69  Aligned_cols=105  Identities=30%  Similarity=0.608  Sum_probs=94.6

Q ss_pred             CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +.|..+++++|++.+ +++++++|.||++||++|+++.|.+.++++.+.+   ++.++.+|++++++++++|+|.++||+
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~   81 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD---KIEIVKLNIDENPGTAAKYGVMSIPTL   81 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC---CeEEEEEEcCCCHHHHHhCCCCcccEE
Confidence            468999999998765 6678999999999999999999999999988754   399999999999999999999999999


Q ss_pred             EEEeCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          122 KIFMHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       122 ~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      ++|++|+.+ .+.|..+.+.+.+|+.+.+.
T Consensus        82 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           82 NVYQGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EEEeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            999999876 48999999999999987753

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.81  E-value=4.9e-19  Score=138.43  Aligned_cols=105  Identities=26%  Similarity=0.388  Sum_probs=94.6

Q ss_pred             CCCCeEEcCh-hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           41 IDGKVIELDE-SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        41 ~~~~v~~l~~-~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      ....+.++++ ++|++.+.++++++|.||++||++|+++.|.|.++++.+.    ++.|+.|||+++++++++|+|.++|
T Consensus        17 ~~~mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~~l~~~~~v~~~P   92 (125)
T 1r26_A           17 RYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNNSEIVSKCRVLQLP   92 (125)
T ss_dssp             CCSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             cccceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC----CCEEEEEECCCCHHHHHHcCCCccc
Confidence            3455899999 9999999888999999999999999999999999998763    3999999999999999999999999


Q ss_pred             EEEEEeCCEEEe-ecCCCCHHHHHHHHHhhcC
Q 017971          120 TLKIFMHGIPTE-YYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       120 t~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~  150 (363)
                      |+++|++|+.+. +.| .+.+.|.+++.+.+.
T Consensus        93 t~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           93 TFIIARSGKMLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             EEEEEETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred             EEEEEeCCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence            999999998764 788 688999999987753

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.80  E-value=4.6e-19  Score=134.44  Aligned_cols=103  Identities=28%  Similarity=0.560  Sum_probs=93.3

Q ss_pred             CeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .|..+++++|++.+ +++++++|.||++||++|+++.|.+.++++.+.+   ++.++.+|++++++++++|+|.++||++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   78 (107)
T 1dby_A            2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD---KLKCVKLNTDESPNVASEYGIRSIPTIM   78 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTCHHHHHHHTCCSSCEEE
T ss_pred             ccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC---ceEEEEEECCCCHHHHHHCCCCcCCEEE
Confidence            47889999999976 6678999999999999999999999999988754   3999999999999999999999999999


Q ss_pred             EEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          123 IFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       123 ~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      +|++|+.+ .+.|..+.+.+.+++.+.+
T Consensus        79 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           79 VFKGGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             EESSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            99988765 4899999999999998765

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.80  E-value=4.6e-19  Score=164.26  Aligned_cols=207  Identities=21%  Similarity=0.249  Sum_probs=170.9

Q ss_pred             hhcCCCceecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeE
Q 017971          147 KFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPAL  221 (363)
Q Consensus       147 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  221 (363)
                      ....+.+..|++.+++++++..++   +++|+|+++.     ..+.++|..+ +.+.|+  .+.+.++++.++++. |++
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~~~---~~vvgff~~~~~~~~~~f~~~A~~~-~~~~F~--~t~~~~v~~~~~v~~-~~i   85 (361)
T 3uem_A           13 GPGSEFATTLPDGAAAESLVESSE---VAVIGFFKDVESDSAKQFLQAAEAI-DDIPFG--ITSNSDVFSKYQLDK-DGV   85 (361)
T ss_dssp             CCCCSSSEECCSHHHHHHHHHTSS---EEEEEECSCTTSHHHHHHHHHHHHC-SSSCEE--EECCHHHHHHTTCSS-SEE
T ss_pred             CCccccceecCCHHHHHHHHhcCC---cEEEEEEcCCCchHHHHHHHHHhcC-CCceEE--EECcHHHHHHhCCCC-CeE
Confidence            335577899999999999998876   6888888542     3578888877 444444  456788999999987 999


Q ss_pred             EEEcCCCCCcccccCCCCHHHHHHHHHhhcCCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC
Q 017971          222 VALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR  301 (363)
Q Consensus       222 v~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~  301 (363)
                      ++|++.++....|.|+++.++|.+||..+..|++.++|.+++..+...+.+.++++|........+++...++++|++++
T Consensus        86 ~lfk~f~~~~~~~~g~~~~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~  165 (361)
T 3uem_A           86 VLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK  165 (361)
T ss_dssp             EEEESSTTSEEECCSCCCHHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGT
T ss_pred             EEEEecCCCccccCCcCCHHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHcc
Confidence            99998777888999999999999999999999999999999999887776665555555566677889999999999999


Q ss_pred             C-cEEEEEecc--CchhHHhhcCCCCCCCCCeEEEEeCCC---CeeEEEEEEeehhhhhHhhhhhc
Q 017971          302 E-LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGNE---NYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       302 ~-~~f~~vd~~--~~~~~~~~~gi~~~~~~P~~vi~~~~~---~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      + +.|+++|+.  +++.+++.||+ ...+.|++++++..+   +|....+..+.+.+..|+..+|.
T Consensus       166 ~~i~f~~vd~~~~~~~~~~~~fgi-~~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~  230 (361)
T 3uem_A          166 GKILFIFIDSDHTDNQRILEFFGL-KKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLE  230 (361)
T ss_dssp             TTCEEEEECTTSGGGHHHHHHTTC-CTTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHT
T ss_pred             CceEEEEecCChHHHHHHHHHcCC-CccCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhc
Confidence            8 999999998  68999999999 456799999999843   44444578899999999999875

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.80  E-value=9.7e-20  Score=137.88  Aligned_cols=97  Identities=14%  Similarity=0.166  Sum_probs=77.7

Q ss_pred             ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCE
Q 017971           49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI  128 (363)
Q Consensus        49 ~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  128 (363)
                      +.++|++.++++++++|.||++||++|+.+.|.++++++.+.    ++.++.+|++++++++++|+|.++||+++|++|+
T Consensus         7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~   82 (105)
T 4euy_A            7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN----YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGK   82 (105)
T ss_dssp             ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT----TEEEEEEEECCC---------CCCCEEEEEETTE
T ss_pred             CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC----CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCe
Confidence            457788888888999999999999999999999999998762    4999999999999999999999999999999998


Q ss_pred             EE-eecCCCCHHHHHHHHHhhc
Q 017971          129 PT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       129 ~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      .+ .+.|..+.+.|.+++.+++
T Consensus        83 ~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           83 EILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EEEEEESSCCHHHHHHHHHTTC
T ss_pred             EEEEEeCCcCHHHHHHHHHHhh
Confidence            76 4899999999999998764

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.80  E-value=8.1e-19  Score=132.46  Aligned_cols=101  Identities=31%  Similarity=0.591  Sum_probs=92.0

Q ss_pred             eEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971           45 VIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI  123 (363)
Q Consensus        45 v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  123 (363)
                      |.++++++|++.+ +++++++|.||++||++|+.+.|.+.++++.+.+   ++.++.+|++++++++++|+|.++|++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNIRSIPTVLF   78 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC---ceEEEEEcCcchHHHHHhCCCCcccEEEE
Confidence            6789999999976 5678999999999999999999999999988754   39999999999999999999999999999


Q ss_pred             EeCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971          124 FMHGIPTE-YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       124 ~~~g~~~~-y~g~~~~~~i~~~i~~~  148 (363)
                      |++|+.+. +.|..+.+.+.+++.+.
T Consensus        79 ~~~g~~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           79 FKNGERKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             EETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred             EeCCeEEEEEecCCCHHHHHHHHHhh
Confidence            99998764 89999999999999875

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.80  E-value=1.1e-18  Score=132.45  Aligned_cols=101  Identities=24%  Similarity=0.432  Sum_probs=88.1

Q ss_pred             eEEc-ChhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           45 VIEL-DESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        45 v~~l-~~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +..+ +.++|++.+  .++++++|.||++||++|+++.|.++++++.+.    ++.|+.+|++++++++++|+|.++||+
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~   78 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQCQGTAATNNISATPTF   78 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC----CcEEEEEECccCHHHHHhcCCCcccEE
Confidence            5556 668999998  568999999999999999999999999998762    499999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecCCCCHHHHHHHHHhhcC
Q 017971          122 KIFMHGIPTE-YYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~  150 (363)
                      ++|++|+.+. +.|. ..++|.+|+.+.++
T Consensus        79 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~lg  107 (107)
T 1gh2_A           79 QFFRNKVRIDQYQGA-DAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEEETTEEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             EEEECCeEEEEEeCC-CHHHHHHHHHHhcC
Confidence            9999998764 7885 45569999987653

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.80  E-value=1e-18  Score=133.20  Aligned_cols=101  Identities=31%  Similarity=0.524  Sum_probs=90.9

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      ......+.++|++++.++++++|.||++||++|+++.|.++++++.+.+    +.|+.+|++++++++++|+|.++||++
T Consensus         7 ~~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~~~~vd~~~~~~l~~~~~v~~~Pt~~   82 (109)
T 3f3q_A            7 MVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ----ADFYKLDVDELGDVAQKNEVSAMPTLL   82 (109)
T ss_dssp             CCEECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cccCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC----CEEEEEECCCCHHHHHHcCCCccCEEE
Confidence            3455677899999999999999999999999999999999999987643    899999999999999999999999999


Q ss_pred             EEeCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971          123 IFMHGIPTE-YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       123 ~~~~g~~~~-y~g~~~~~~i~~~i~~~  148 (363)
                      +|++|+.+. +.|. +.+.|.+++.++
T Consensus        83 ~~~~G~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           83 LFKNGKEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             EEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence            999998764 7887 779999999875

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.80  E-value=7.8e-19  Score=152.34  Aligned_cols=122  Identities=17%  Similarity=0.271  Sum_probs=101.0

Q ss_pred             CCCCCeEEcChhhHHHhHcCCCeEEEEEE--CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-----chhhhhh
Q 017971           40 KIDGKVIELDESNFDSAISSFDYILVDFY--APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----YSRLASK  112 (363)
Q Consensus        40 ~~~~~v~~l~~~~f~~~l~~~~~~lv~fy--~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----~~~l~~~  112 (363)
                      ...+.++.|++++|++++++++++||.||  ||||+    +.|.|+++|+.+.+..+++.|++|||++     ++++|++
T Consensus        13 ~~~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~   88 (248)
T 2c0g_A           13 VTCTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDR   88 (248)
T ss_dssp             --CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHH
T ss_pred             CCCCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHH
Confidence            34677999999999998888899999999  99998    9999999999986523459999999999     8999999


Q ss_pred             CCcC--cCCEEEEEeCCE---EEee--cCCCCHHHHHHHHHhhcCCCceecCChHHHHHHH
Q 017971          113 QEID--AFPTLKIFMHGI---PTEY--YGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFV  166 (363)
Q Consensus       113 ~~i~--~~Pt~~~~~~g~---~~~y--~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~  166 (363)
                      |+|.  ++||+++|+ |.   +..|  .|.++.+.|.+|+.++++.....-....+++.++
T Consensus        89 ~~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~~~~~g~i~~~d~l~  148 (248)
T 2c0g_A           89 YKVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPLYIGRDGCIKEFNEVL  148 (248)
T ss_dssp             TTCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSCCCCCTTCCHHHHHHH
T ss_pred             hCCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhccccCCCCchHHHHHHH
Confidence            9999  999999999 87   5679  9999999999999999763322222223455444

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.80  E-value=1.1e-18  Score=133.47  Aligned_cols=104  Identities=30%  Similarity=0.593  Sum_probs=93.2

Q ss_pred             CCeEEc-ChhhHHHhHcC----CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           43 GKVIEL-DESNFDSAISS----FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        43 ~~v~~l-~~~~f~~~l~~----~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      +.+..+ +.++|++.+.+    +++++|.||++||++|+.+.|.|+++++.+.+   ++.++.+|++++++++++|+|.+
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~   78 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDAVAAVAEAAGITA   78 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTTHHHHHHHTCCB
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC---CeEEEEEECCchHHHHHHcCCCc
Confidence            467888 57899999865    89999999999999999999999999988754   49999999999999999999999


Q ss_pred             CCEEEEEeCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          118 FPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       118 ~Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +||+++|++|+.+ .+.|. +.+.|.+|+.+.+.
T Consensus        79 ~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           79 MPTFHVYKDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             SSEEEEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             ccEEEEEECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence            9999999999876 48898 99999999988754

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.80  E-value=2.3e-19  Score=139.30  Aligned_cols=108  Identities=38%  Similarity=0.748  Sum_probs=94.4

Q ss_pred             CCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcC--CCCeEEEEEeCccchhhhhhCCcCc
Q 017971           41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL--KEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~--~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      ..+.+.+|++++|++.+ +++++++|.||++||++|+++.|.|+++++.+.+.  ..++.|+.+||++++ +++  +|.+
T Consensus         5 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~   81 (121)
T 2djj_A            5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQG   81 (121)
T ss_dssp             CSCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSS
T ss_pred             CCCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCc
Confidence            46789999999999986 67899999999999999999999999999988652  125999999999887 666  9999


Q ss_pred             CCEEEEEeCC-E--EEeecCCCCHHHHHHHHHhhcCC
Q 017971          118 FPTLKIFMHG-I--PTEYYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       118 ~Pt~~~~~~g-~--~~~y~g~~~~~~i~~~i~~~~~~  151 (363)
                      +||+++|.+| +  ...|.|.++.+.|.+|+.+++..
T Consensus        82 ~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (121)
T 2djj_A           82 FPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY  118 (121)
T ss_dssp             SSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSS
T ss_pred             CCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCc
Confidence            9999999887 4  45699999999999999988753

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.80  E-value=9.2e-19  Score=133.81  Aligned_cols=104  Identities=25%  Similarity=0.465  Sum_probs=92.3

Q ss_pred             CCCCeEEcChhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhhhCCcCc
Q 017971           41 IDGKVIELDESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQEIDA  117 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~  117 (363)
                      ..+.|..+++++|++.+.  ++++++|.||++||++|+++.|.+.++++.+.    ++.++.+|++ ++++++++|+|.+
T Consensus         3 ~~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~~v~~   78 (111)
T 2pu9_C            3 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL----DVIFLKLDCNQENKTLAKELGIRV   78 (111)
T ss_dssp             CTTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSTTHHHHHHHCCSB
T ss_pred             CcCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC----CeEEEEEecCcchHHHHHHcCCCe
Confidence            357899999999999996  57899999999999999999999999998764    2999999998 7899999999999


Q ss_pred             CCEEEEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          118 FPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       118 ~Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      +||++++++|+.+ .+.|.. .+.|.+++.+..
T Consensus        79 ~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~~  110 (111)
T 2pu9_C           79 VPTFKILKENSVVGEVTGAK-YDKLLEAIQAAR  110 (111)
T ss_dssp             SSEEEEESSSSEEEEEESSC-HHHHHHHHHHHH
T ss_pred             eeEEEEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence            9999999999866 478874 899999998764

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.79  E-value=7.4e-19  Score=136.40  Aligned_cols=107  Identities=34%  Similarity=0.597  Sum_probs=95.3

Q ss_pred             CCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      ..+.+..+++++|.+.+ +++++++|.||++||++|+.+.|.++++++.+.+   ++.++.+||++++++|++|+|.++|
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~i~~~P   86 (121)
T 2i1u_A           10 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT---DLTVAKLDVDTNPETARNFQVVSIP   86 (121)
T ss_dssp             --CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             hcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEECCCCHHHHHhcCCCcCC
Confidence            35679999999999765 6778999999999999999999999999988754   3999999999999999999999999


Q ss_pred             EEEEEeCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          120 TLKIFMHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       120 t~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      ++++|++|+.+ .+.|..+.+.+.+|+.+.+.
T Consensus        87 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           87 TLILFKDGQPVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred             EEEEEECCEEEEEecCCCCHHHHHHHHHHHHh
Confidence            99999999876 48999999999999987654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.79  E-value=2.1e-18  Score=130.47  Aligned_cols=100  Identities=30%  Similarity=0.627  Sum_probs=90.4

Q ss_pred             eEEcCh-hhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           45 VIELDE-SNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        45 v~~l~~-~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +.++++ ++|++.+.  ++++++|.||++||++|+++.|.++++++.+++   ++.++.+|++++++++++|++.++|++
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~   78 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD---NVVVLKVDVDECEDIAMEYNISSMPTF   78 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC---CeEEEEEeccchHHHHHHcCCCcccEE
Confidence            677888 99999986  789999999999999999999999999988753   499999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971          122 KIFMHGIPTE-YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~  148 (363)
                      ++|++|+.+. +.| .+.+.+.+|+.+.
T Consensus        79 ~~~~~G~~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           79 VFLKNGVKVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             EEEETTEEEEEEES-CCHHHHHHHHHHT
T ss_pred             EEEcCCcEEEEEcC-CCHHHHHHHHHHh
Confidence            9999998764 788 7889999999875

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.79  E-value=1.4e-18  Score=132.99  Aligned_cols=103  Identities=33%  Similarity=0.661  Sum_probs=93.7

Q ss_pred             CCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      .+....++.++|+++++++++++|.||++||++|+++.|.++++++.+.    ++.++.+|++++++++++|+|.++|++
T Consensus         8 ~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~Pt~   83 (112)
T 1syr_A            8 HMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT----KMVFIKVDVDEVSEVTEKENITSMPTF   83 (112)
T ss_dssp             -CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             eeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC----CCEEEEEECCCCHHHHHHcCCCcccEE
Confidence            4677899999999999988999999999999999999999999998764    399999999999999999999999999


Q ss_pred             EEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          122 KIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|++|+.+ .+.|. +.+.|.+|+.+.+
T Consensus        84 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           84 KVYKNGSSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEEETTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred             EEEECCcEEEEEeCC-CHHHHHHHHHHhh
Confidence            999999876 48898 9999999998764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.79  E-value=2.6e-19  Score=141.49  Aligned_cols=112  Identities=29%  Similarity=0.557  Sum_probs=98.6

Q ss_pred             CCCCeEEcChhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           41 IDGKVIELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      ..+.|..+++++|++.+. ++++++|.||++||++|+++.|.|+++++.+.+. .++.++.+||++++.++++|+|.++|
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~P   83 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQ-KDLVIAKMDATANDITNDQYKVEGFP   83 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTS-SSEEEEEECTTTSCCCCSSCCCSSSS
T ss_pred             CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC-CCEEEEEecCCcCHHHHhhcCCCcCC
Confidence            467899999999999885 4789999999999999999999999999988642 35999999999999999999999999


Q ss_pred             EEEEEeCCE---EEeec-CCCCHHHHHHHHHhhcCCCc
Q 017971          120 TLKIFMHGI---PTEYY-GPRKAELLVRYLKKFVAPDV  153 (363)
Q Consensus       120 t~~~~~~g~---~~~y~-g~~~~~~i~~~i~~~~~~~v  153 (363)
                      |+++|.+|.   .+.|. |.++.+.|.+|+.+.+....
T Consensus        84 t~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~~  121 (133)
T 2dj3_A           84 TIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRS  121 (133)
T ss_dssp             EEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSCS
T ss_pred             EEEEEeCCCcccceEecCCCcCHHHHHHHHHHhccccc
Confidence            999998875   34677 56999999999999987553

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.79  E-value=1.7e-18  Score=149.30  Aligned_cols=113  Identities=33%  Similarity=0.544  Sum_probs=100.4

Q ss_pred             cccCCCCCeEEcChhhHHHh-HcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCc
Q 017971           37 TKFKIDGKVIELDESNFDSA-ISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEI  115 (363)
Q Consensus        37 ~~~~~~~~v~~l~~~~f~~~-l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i  115 (363)
                      +.+...+.+..+|+++|++. ++++++++|.||++||++|+.+.|.|+++++.+.+.   +.++.|||++++++|++|+|
T Consensus         6 ~~~~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~~l~~~~~v   82 (222)
T 3dxb_A            6 HHHPMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNPGTAPKYGI   82 (222)
T ss_dssp             ---CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCTTTGGGGTC
T ss_pred             cCCCCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCCHHHHHHcCC
Confidence            34455788999999999985 577899999999999999999999999999987653   99999999999999999999


Q ss_pred             CcCCEEEEEeCCEEE-eecCCCCHHHHHHHHHhhcCCC
Q 017971          116 DAFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       116 ~~~Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~~~  152 (363)
                      .++||+++|++|+.+ .+.|..+.+.+.+|+.+.+...
T Consensus        83 ~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~  120 (222)
T 3dxb_A           83 RGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGS  120 (222)
T ss_dssp             CSBSEEEEEETTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred             CcCCEEEEEECCeEEEEeccccChHHHHHHHHhhcccc
Confidence            999999999999876 5899999999999999988643

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.79  E-value=4.2e-19  Score=138.11  Aligned_cols=107  Identities=25%  Similarity=0.544  Sum_probs=92.8

Q ss_pred             CCCeEEcChhhHHH-hHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           42 DGKVIELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        42 ~~~v~~l~~~~f~~-~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      ++.+..+++++|++ +++++++++|.||++||++|+++.|.|+++++.+.+   ++.|+.+||+++++++++|+|.++||
T Consensus         2 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt   78 (122)
T 3aps_A            2 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG---KVRAGKVDCQAYPQTCQKAGIKAYPS   78 (122)
T ss_dssp             CCCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT---TCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CcchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEeCcCCHHHHHHcCCCccce
Confidence            35789999999965 557789999999999999999999999999998865   39999999999999999999999999


Q ss_pred             EEEEeCCEE-EeecCC----CCHHHHHHHHHhhcCC
Q 017971          121 LKIFMHGIP-TEYYGP----RKAELLVRYLKKFVAP  151 (363)
Q Consensus       121 ~~~~~~g~~-~~y~g~----~~~~~i~~~i~~~~~~  151 (363)
                      +++|.+|.. ..+.|.    ++.+.|.+|+.+.+..
T Consensus        79 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~  114 (122)
T 3aps_A           79 VKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET  114 (122)
T ss_dssp             EEEEEEEGGGTEEEEEEECCSCHHHHHHHHHHHHHC
T ss_pred             EEEEeCCCccceeeccccCcCCHHHHHHHHHHHHHh
Confidence            999976543 345554    8999999999888653

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2e-18  Score=132.15  Aligned_cols=103  Identities=22%  Similarity=0.371  Sum_probs=88.3

Q ss_pred             CeEEcCh-hhHHHhHcC---CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           44 KVIELDE-SNFDSAISS---FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        44 ~v~~l~~-~~f~~~l~~---~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      +|..+++ ++|++.+.+   +++++|.||++||++|+++.|.++++++.++.  .++.++.+|++++++++++|+|.++|
T Consensus         1 ~v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~P   78 (112)
T 3d6i_A            1 PVIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN--SNVSFLSIDADENSEISELFEISAVP   78 (112)
T ss_dssp             CEEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGG--TTSEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCC--CCEEEEEEecccCHHHHHHcCCCccc
Confidence            3678887 999999976   78999999999999999999999999987643  24999999999999999999999999


Q ss_pred             EEEEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          120 TLKIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       120 t~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      |+++|++|+.+. +.|. ..++|.+++.+.+
T Consensus        79 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~  108 (112)
T 3d6i_A           79 YFIIIHKGTILKELSGA-DPKEYVSLLEDCK  108 (112)
T ss_dssp             EEEEEETTEEEEEECSC-CHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEecCC-CHHHHHHHHHHHH
Confidence            999999998765 7787 4556999998765

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.78  E-value=2.3e-18  Score=132.93  Aligned_cols=100  Identities=32%  Similarity=0.601  Sum_probs=90.4

Q ss_pred             CeEEcCh-hhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           44 KVIELDE-SNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        44 ~v~~l~~-~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      .+.++++ ++|++.+.  ++++++|.||++||++|+++.|.++++++.+     ++.++.+|++++++++++|+|.++||
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-----~~~~~~vd~~~~~~~~~~~~v~~~Pt   88 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-----DAIFVKVDVDKLEETARKYNISAMPT   88 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-----SSEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-----CcEEEEEECCccHHHHHHcCCCccce
Confidence            4899998 99999996  7889999999999999999999999998765     49999999999999999999999999


Q ss_pred             EEEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          121 LKIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       121 ~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      +++|++|+.+. +.| .+.+.|.+++.+.+
T Consensus        89 ~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           89 FIAIKNGEKVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             EEEEETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             EEEEeCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence            99999998764 788 68899999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.78  E-value=1.5e-18  Score=155.59  Aligned_cols=106  Identities=25%  Similarity=0.496  Sum_probs=98.1

Q ss_pred             CCCeEEcChhhHHHhHcC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           42 DGKVIELDESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      .+.|+++|+++|++.+..  +++++|.||++||++|+.+.|.|+++++.+.+   ++.|+.|||+++++++++|+|.++|
T Consensus         6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~P   82 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG---QFILAKLDCDAEQMIAAQFGLRAIP   82 (287)
T ss_dssp             CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS---SSEEEEEETTTCHHHHHTTTCCSSS
T ss_pred             CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEEeCccCHHHHHHcCCCCCC
Confidence            467999999999998854  78999999999999999999999999998865   3999999999999999999999999


Q ss_pred             EEEEEeCCEEEe-ecCCCCHHHHHHHHHhhcC
Q 017971          120 TLKIFMHGIPTE-YYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       120 t~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~  150 (363)
                      |+++|++|+.+. |.|..+.+.+.+|+....+
T Consensus        83 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~lp  114 (287)
T 3qou_A           83 TVYLFQNGQPVDGFQGPQPEEAIRALLDXVLP  114 (287)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             eEEEEECCEEEEEeeCCCCHHHHHHHHHHHcC
Confidence            999999998775 8999999999999999874

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.78  E-value=2.4e-18  Score=129.91  Aligned_cols=99  Identities=26%  Similarity=0.583  Sum_probs=88.7

Q ss_pred             EEc-ChhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           46 IEL-DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        46 ~~l-~~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      ..+ +.++|++.+.  ++++++|.||++||++|+++.|.++++++.+.+    +.++.+|++++++++++|+|.++||++
T Consensus         3 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~vd~~~~~~~~~~~~v~~~Pt~~   78 (105)
T 3m9j_A            3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDCQDVASESEVKSMPTFQ   78 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT----SEEEEEETTTCHHHHHHTTCCBSSEEE
T ss_pred             EEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC----eEEEEEEhhhhHHHHHHcCCCcCcEEE
Confidence            344 5788999886  789999999999999999999999999987643    999999999999999999999999999


Q ss_pred             EEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          123 IFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       123 ~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      +|++|+.+. +.|. +.+.+.+++.+.+
T Consensus        79 ~~~~g~~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           79 FFKKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             EEECCeEEEEEeCC-CHHHHHHHHHHhC
Confidence            999998774 8888 9999999998753

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.78  E-value=3.2e-18  Score=133.09  Aligned_cols=104  Identities=24%  Similarity=0.418  Sum_probs=93.7

Q ss_pred             CCCeEEcChhhHHHhHc----CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           42 DGKVIELDESNFDSAIS----SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~----~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      .+.+..++.++|++.+.    .+++++|.||++||++|+++.|.|+++++.+.+    +.|+.||++++++++++|+|.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~~~~~~~~~v~~   87 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDVDELKPIAEQFSVEA   87 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCHHHHHHTTCCS
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----cEEEEEECCCCHHHHHHcCCCc
Confidence            45678889999999884    478999999999999999999999999987643    9999999999999999999999


Q ss_pred             CCEEEEEeCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          118 FPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       118 ~Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +||+++|++|+.+ .+.|.. .+.|.+|+.+.+.
T Consensus        88 ~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           88 MPTFLFMKEGDVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             SSEEEEEETTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             ccEEEEEeCCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence            9999999999876 488988 9999999998765

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.78  E-value=5.3e-19  Score=137.84  Aligned_cols=104  Identities=35%  Similarity=0.585  Sum_probs=89.5

Q ss_pred             CCeEEcChhhHHHhH-cCCCeEEEEEECCCCh--------------hhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch
Q 017971           43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCG--------------HCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS  107 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~--------------~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~  107 (363)
                      +.++++++++|++.+ +++++++|.||++||+              +|+.+.|.|+++++.+.+   ++.++.+|+++++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~---~~~~~~vd~d~~~   79 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNP   79 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSCT
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC---CeEEEEEECCCCH
Confidence            468999999998654 7789999999999999              999999999999987754   3999999999999


Q ss_pred             hhhhhCCcCcCCEEEEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          108 RLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       108 ~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      +++++|+|.++||+++|++|+.+ .+.|..+.+++.+|+.+.+
T Consensus        80 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           80 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TTGGGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            99999999999999999999876 4899999999999998765

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.78  E-value=2.6e-18  Score=137.07  Aligned_cols=105  Identities=32%  Similarity=0.631  Sum_probs=81.4

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      +.+.++++++|++.+.+++.++|.||++||++|+.+.|.|+++++.+.+   ++.|+.||++++++++++|+|.++||++
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  109 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG---RLKVVKVNVDEHPGLAARYGVRSVPTLV  109 (140)
T ss_dssp             ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccC---ceEEEEEECCCCHHHHHHCCCCccCEEE
Confidence            7899999999999886555599999999999999999999999988754   3999999999999999999999999999


Q ss_pred             EEeCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          123 IFMHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       123 ~~~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +|++|+.+ .+.|..+.+.+.+|+.+.+.
T Consensus       110 ~~~~G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          110 LFRRGAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEeCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence            99999876 48999999999999998765

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.78  E-value=3.9e-18  Score=132.98  Aligned_cols=103  Identities=24%  Similarity=0.479  Sum_probs=92.2

Q ss_pred             CCCeEEcChhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhhhCCcCcC
Q 017971           42 DGKVIELDESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQEIDAF  118 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~  118 (363)
                      .+.+..+++++|++.+.  ++++++|.||++||++|+++.|.++++++.+.    ++.++.+|++ ++++++++|+|.++
T Consensus        17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~~~~~~vd~~~~~~~~~~~~~v~~~   92 (124)
T 1faa_A           17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL----DVIFLKLDCNQENKTLAKELGIRVV   92 (124)
T ss_dssp             TTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSTTHHHHHHHCCSSS
T ss_pred             CCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC----CCEEEEEecCcchHHHHHHcCCCee
Confidence            57899999999999885  67899999999999999999999999998764    3899999998 68999999999999


Q ss_pred             CEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          119 PTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       119 Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      ||++++++|+.+. +.|.. .+++.+++.+..
T Consensus        93 Pt~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           93 PTFKILKENSVVGEVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             SEEEEEETTEEEEEEESSC-HHHHHHHHHHHT
T ss_pred             eEEEEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence            9999999998764 78876 899999998754

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.77  E-value=5.7e-18  Score=132.16  Aligned_cols=104  Identities=30%  Similarity=0.532  Sum_probs=92.5

Q ss_pred             CCCCeEEc-ChhhHHHhHc----CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCc
Q 017971           41 IDGKVIEL-DESNFDSAIS----SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEI  115 (363)
Q Consensus        41 ~~~~v~~l-~~~~f~~~l~----~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i  115 (363)
                      ..+.+..+ +.++|++.+.    ++++++|.||++||++|+.+.|.++++++.+.    ++.|+.+|++++++++++|+|
T Consensus        14 ~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~vd~d~~~~l~~~~~v   89 (124)
T 1xfl_A           14 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDELKSVASDWAI   89 (124)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTSHHHHHHTTC
T ss_pred             CCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CcEEEEEECccCHHHHHHcCC
Confidence            45678888 7799999885    47899999999999999999999999998764    499999999999999999999


Q ss_pred             CcCCEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          116 DAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       116 ~~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      .++||+++|++|+.+. +.| .+.+.|.+++.+.+
T Consensus        90 ~~~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           90 QAMPTFMFLKEGKILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             CSSSEEEEEETTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred             CccCEEEEEECCEEEEEEeC-CCHHHHHHHHHHhc
Confidence            9999999999998764 778 58999999998764

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.77  E-value=5.2e-18  Score=127.77  Aligned_cols=99  Identities=27%  Similarity=0.556  Sum_probs=88.5

Q ss_pred             eEEcCh-hhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           45 VIELDE-SNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        45 v~~l~~-~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +..+++ ++|++.+.  ++++++|.||++||++|+.+.|.+.++++.+.    ++.++.+|++++++++++|++.++|++
T Consensus         1 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~~~~~v~~~Pt~   76 (104)
T 2vim_A            1 MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP----EVEFAKVDVDQNEEAAAKYSVTAMPTF   76 (104)
T ss_dssp             CEECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CeecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC----CCEEEEEeccCCHHHHHHcCCccccEE
Confidence            356666 89999996  68899999999999999999999999998764    499999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971          122 KIFMHGIPTE-YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~  148 (363)
                      ++|++|+.+. +.| .+.+.+.+|+.+.
T Consensus        77 ~~~~~g~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           77 VFIKDGKEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             EEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             EEEeCCcEEEEEeC-CCHHHHHHHHHhh
Confidence            9999998764 788 6899999999875

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.77  E-value=4.6e-18  Score=137.79  Aligned_cols=105  Identities=22%  Similarity=0.437  Sum_probs=93.5

Q ss_pred             CCCeEEcC-hhhHHHhHcC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           42 DGKVIELD-ESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        42 ~~~v~~l~-~~~f~~~l~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      .+.+..++ .++|++.+++  +++++|.||++||++|+++.|.|+++++.+.    ++.|+.|||+++++++++|+|.++
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~~~~~~l~~~~~v~~~   86 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP----QVSFVKLEAEGVPEVSEKYEISSV   86 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSHHHHHHTTCCSS
T ss_pred             cCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC----CeEEEEEECCCCHHHHHHcCCCCC
Confidence            46788887 5999999976  8999999999999999999999999998752    499999999999999999999999


Q ss_pred             CEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhcCC
Q 017971          119 PTLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       119 Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~  151 (363)
                      |++++|.+|+.+. +.| .+.+.|.+|+.+.+..
T Consensus        87 Pt~~~~~~G~~~~~~~G-~~~~~l~~~i~~~l~~  119 (153)
T 2wz9_A           87 PTFLFFKNSQKIDRLDG-AHAPELTKKVQRHASS  119 (153)
T ss_dssp             SEEEEEETTEEEEEEES-SCHHHHHHHHHHHSCT
T ss_pred             CEEEEEECCEEEEEEeC-CCHHHHHHHHHHHhcc
Confidence            9999999998775 667 5788999999999864

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.77  E-value=1.5e-18  Score=136.22  Aligned_cols=99  Identities=22%  Similarity=0.344  Sum_probs=87.6

Q ss_pred             EcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC
Q 017971           47 ELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH  126 (363)
Q Consensus        47 ~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~  126 (363)
                      .++++.++....++++++|.||++||++|+++.|.++++++.+.+   ++.++.||++++++++++|+|.++||+++|++
T Consensus        29 ~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~  105 (128)
T 3ul3_B           29 QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK---RIYLLKVDLDKNESLARKFSVKSLPTIILLKN  105 (128)
T ss_dssp             CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GEEEEEEEGGGCHHHHHHTTCCSSSEEEEEET
T ss_pred             cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHcCCCCcCEEEEEEC
Confidence            444555666667889999999999999999999999999998864   39999999999999999999999999999999


Q ss_pred             CEEE-eecCCCCHHHHHHHHHhh
Q 017971          127 GIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       127 g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                      |+.+ .+.|..+.++|.+|+.++
T Consensus       106 G~~~~~~~G~~~~~~l~~~l~~~  128 (128)
T 3ul3_B          106 KTMLARKDHFVSSNDLIALIKKH  128 (128)
T ss_dssp             TEEEEEESSCCCHHHHHHHHTTC
T ss_pred             CEEEEEecCCCCHHHHHHHHHhC
Confidence            9876 489999999999998753

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.77  E-value=1.8e-18  Score=137.08  Aligned_cols=106  Identities=21%  Similarity=0.301  Sum_probs=93.8

Q ss_pred             CCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC---------ccchhhhh
Q 017971           41 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA---------DKYSRLAS  111 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~---------~~~~~l~~  111 (363)
                      ..+.+..++.++|++.+++  +++|.||++||++|+++.|.+.++++.+.     +.|+.||+         ++++++++
T Consensus        14 ~~~~v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~~~~d~~~~l~~   86 (135)
T 3emx_A           14 EDGRLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGERELSAARLEMN   86 (135)
T ss_dssp             ETTEEEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             ccCceeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhhhhhhhhHHHHH
Confidence            3578999999999999976  99999999999999999999999987542     88999999         88999999


Q ss_pred             hCCcCcCCEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhcCCCc
Q 017971          112 KQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAPDV  153 (363)
Q Consensus       112 ~~~i~~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~~v  153 (363)
                      +|+|.++||+++|++|+.+. +.|..+.+.+.+++++...++-
T Consensus        87 ~~~v~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~~~  129 (135)
T 3emx_A           87 KAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGEG  129 (135)
T ss_dssp             HHTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC----
T ss_pred             HcCCceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCCCc
Confidence            99999999999999998764 8999999999999999987543

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.77  E-value=7.6e-18  Score=145.66  Aligned_cols=102  Identities=25%  Similarity=0.417  Sum_probs=93.6

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEEC--CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-----CccchhhhhhCCc
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYA--PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-----ADKYSRLASKQEI  115 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~--~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-----~~~~~~l~~~~~i  115 (363)
                      +.|+.|++++|++.++.+++++|.|||  |||+    +.|.|+++++.+.+ .+++.|++||     |++++++|++|+|
T Consensus         5 ~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~-~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A            5 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSAS-SDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             TTCEECCTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTT-CTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CCceECCHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcC-CCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            568999999999999888999999999  9999    99999999999865 3469999999     6669999999999


Q ss_pred             C--cCCEEEEEeCCE---EEeecCCCCHHHHHHHHHhhc
Q 017971          116 D--AFPTLKIFMHGI---PTEYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       116 ~--~~Pt~~~~~~g~---~~~y~g~~~~~~i~~~i~~~~  149 (363)
                      .  ++||+++|++|.   +..|.|.++.+.|.+|+.++.
T Consensus        80 ~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           80 DKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            9  999999999987   568999999999999999985

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.76  E-value=1.8e-18  Score=132.04  Aligned_cols=102  Identities=19%  Similarity=0.264  Sum_probs=89.0

Q ss_pred             eEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971           45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        45 v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      +..+++++| +.+.++++++|.||++||++|+++.|.++++++.+.    ++.++.+|++++++++++|+|.++||+++|
T Consensus         5 ~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   79 (110)
T 2l6c_A            5 RDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP----QVAISSVDSEARPELMKELGFERVPTLVFI   79 (110)
T ss_dssp             SBCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT----TSCEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             eecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC----CcEEEEEcCcCCHHHHHHcCCcccCEEEEE
Confidence            455778899 777778999999999999999999999999987653    489999999999999999999999999999


Q ss_pred             eCCEEE-eecCCCCHHHHHHHHHhhcCC
Q 017971          125 MHGIPT-EYYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       125 ~~g~~~-~y~g~~~~~~i~~~i~~~~~~  151 (363)
                      ++|+.+ ++.|..+.+.|.+++....++
T Consensus        80 ~~G~~v~~~~G~~~~~~l~~~~~~~~~~  107 (110)
T 2l6c_A           80 RDGKVAKVFSGIMNPRELQALYASIHHH  107 (110)
T ss_dssp             ESSSEEEEEESCCCHHHHHHHHHTC---
T ss_pred             ECCEEEEEEcCCCCHHHHHHHHHHHhhh
Confidence            999876 489999999999999887654

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.76  E-value=5.3e-18  Score=136.70  Aligned_cols=99  Identities=18%  Similarity=0.262  Sum_probs=88.7

Q ss_pred             cChhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe
Q 017971           48 LDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM  125 (363)
Q Consensus        48 l~~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  125 (363)
                      .+.++|++.+  +++++++|.|||+||++|+.+.|.++++++.+.+   .+.++.||++++++++++|+|.++||+++|+
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~   85 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK---MAAIYLVDVDQTAVYTQYFDISYIPSTVFFF   85 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTT---TEEEEEEETTTCCHHHHHTTCCSSSEEEEEE
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccC---ceEEEEEECCcCHHHHHHcCCCccCeEEEEE
Confidence            4678999988  5589999999999999999999999999987654   3999999999999999999999999999999


Q ss_pred             CCEEE----------eecC-CCCHHHHHHHHHhhc
Q 017971          126 HGIPT----------EYYG-PRKAELLVRYLKKFV  149 (363)
Q Consensus       126 ~g~~~----------~y~g-~~~~~~i~~~i~~~~  149 (363)
                      +|+.+          .+.| ..+.++|.+++....
T Consensus        86 ~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           86 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             TTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHH
T ss_pred             CCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHH
Confidence            99887          4788 888999999987764

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.76  E-value=7.6e-19  Score=140.09  Aligned_cols=111  Identities=12%  Similarity=0.105  Sum_probs=81.6

Q ss_pred             CeEEcChhhHHHhHcCCCeEEEEEECCC--ChhhhhHHHHHHHHHHHhhcCCCCeE--EEEEeCccchhhhhhCCcCcCC
Q 017971           44 KVIELDESNFDSAISSFDYILVDFYAPW--CGHCKRLAPQLDEAAPILAKLKEPIV--IAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~--C~~C~~~~~~~~~~a~~~~~~~~~v~--~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      .+..+++++|++.+.+++.++|.|+++|  |++|+.+.|.|+++++++ +   ++.  |++||++++++++++|+|.++|
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~---~v~~~~~~Vd~d~~~~la~~~~V~~iP   93 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P---QFDWQVAVADLEQSEAIGDRFNVRRFP   93 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T---TSCCEEEEECHHHHHHHHHTTTCCSSS
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c---ccceeEEEEECCCCHHHHHhcCCCcCC
Confidence            6889999999999988888999999987  999999999999999876 3   377  9999999999999999999999


Q ss_pred             EEEEEeCCEEE-eecCCCCHHHHHHHHHhhcCCCceecCC
Q 017971          120 TLKIFMHGIPT-EYYGPRKAELLVRYLKKFVAPDVSILNS  158 (363)
Q Consensus       120 t~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~~~~v~~i~~  158 (363)
                      |+++|++|+.+ ++.|.++.+.|.+|+.+.+..+...++.
T Consensus        94 T~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~~~~~~~~~  133 (142)
T 2es7_A           94 ATLVFTDGKLRGALSGIHPWAELLTLMRSIVDTPAAQETV  133 (142)
T ss_dssp             EEEEESCC----CEESCCCHHHHHHHHHHHHC--------
T ss_pred             eEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhcccccCCCc
Confidence            99999999876 4899999999999999999877776654

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.76  E-value=2.9e-16  Score=150.96  Aligned_cols=296  Identities=13%  Similarity=0.177  Sum_probs=222.6

Q ss_pred             CCeEEc-ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l-~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      ..+..+ +.++++++++.++.++|.|+.++|.   ...+.|.++|+.+.+.   +.|+.++   +.++++++++...| +
T Consensus       110 ~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~---~~~~~f~~~a~~~~~~---~~F~~~~---~~~~~~~~~v~~~~-i  179 (481)
T 3f8u_A          110 PASVPLRTEEEFKKFISDKDASIVGFFDDSFS---EAHSEFLKAASNLRDN---YRFAHTN---VESLVNEYDDNGEG-I  179 (481)
T ss_dssp             CSEEEECSHHHHHHHTTSSSCEEEEEESCTTC---HHHHHHHHHHHHHTTT---SCEEEEC---CHHHHHHHCSSSEE-E
T ss_pred             cCceecCCHHHHHHHHhcCCcEEEEEECCCcc---chHHHHHHHHHHhccC---ceEEEEC---CHHHHHHhCCCCCc-E
Confidence            456777 6788999998889999999998866   4468899999988654   7888764   67899999999876 7


Q ss_pred             EEEe--------CCEEEeec-CCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeec-C----Ch----
Q 017971          122 KIFM--------HGIPTEYY-GPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFG-L----DE----  183 (363)
Q Consensus       122 ~~~~--------~g~~~~y~-g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~-~----~~----  183 (363)
                      ++|+        ++..+.|. |..+.+.|.+|+.....|.+.+++... +..+.+ .    ++++.|. .    ..    
T Consensus       180 ~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~~n-~~~~~~-~----~~~v~~~~~~~~~~~~~~~  253 (481)
T 3f8u_A          180 ILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDN-KDLIQG-K----DLLIAYYDVDYEKNAKGSN  253 (481)
T ss_dssp             EEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTTTSCEECTTT-HHHHTT-S----SEEEEEECCCTTTCHHHHH
T ss_pred             EEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCCCccccChhH-HHHhcC-C----CceEEEEecccccchhhHH
Confidence            7887        34567898 889999999999999999999998754 666653 2    2333332 1    11    


Q ss_pred             ---hHHHHHHHHhhhh---hHHHHh-hhcchhhhhhcCCC----CCCeEEEEcCCCCCcccccCCCCHH--HHHHHHHhh
Q 017971          184 ---SVMSNLALKYKKK---AWFAVA-KDFSEDTMVLYDFD----KVPALVALQPSYNEHNIFYGPFDEE--FLEEFIKQN  250 (363)
Q Consensus       184 ---~~~~~~a~~~~~~---~~~~~~-~~~~~~~~~~~~~~----~~p~iv~~~~~~~~~~~~~g~~~~~--~l~~fi~~~  250 (363)
                         +.+.++|..+++.   ..|..+ ..........+|+.    ..|.++++. ..+....+.+.++.+  .|.+|+.+.
T Consensus       254 ~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~~~l~~~gl~~~~~~~P~~~i~~-~~~~ky~~~~~~t~e~~~l~~f~~~~  332 (481)
T 3f8u_A          254 YWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRT-AKGEKFVMQEEFSRDGKALERFLQDY  332 (481)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCTTCSCEEEEEC-SSSCEEECCSCCCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHHHcCCCcccCCCcEEEEEc-CCCcccCCCcccCccHHHHHHHHHHH
Confidence               2256788888886   555543 12234456788987    579988886 334455666888888  999999775


Q ss_pred             c-----------------CCCcccCChhhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEe
Q 017971          251 F-----------------LPLSVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVG  309 (363)
Q Consensus       251 ~-----------------~p~~~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd  309 (363)
                      .                 ...+..++..++..+..+ ++++++.|+ ..-....+.+...+.++++.+++   +.|+.+|
T Consensus       333 ~~g~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id  411 (481)
T 3f8u_A          333 FDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFY-APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMD  411 (481)
T ss_dssp             HHTCCCCCCCCCCCCSCCCSSSEEECTTTHHHHHTCTTCEEEEEEE-CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEE
T ss_pred             hcCCcccccccCCCCCCCCCCeEEecccCHHHHhhcCCCcEEEEEe-cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEE
Confidence            1                 112446677888875544 667777666 44677788899999999998765   9999999


Q ss_pred             ccCchhHHhhcCCCCCCCCCeEEEEeCCCC--eeEEEEEEeehhhhhHhhhhh
Q 017971          310 IKQFADFADTFEANKKSKLPKMVVWDGNEN--YLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       310 ~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~--y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +..+ .+.+.+++   ...|++++++.+++  .....|....+.+..|+...+
T Consensus       412 ~~~~-~~~~~~~v---~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  460 (481)
T 3f8u_A          412 ATAN-DVPSPYEV---RGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREA  460 (481)
T ss_dssp             TTSS-CCCTTCCC---CSSSEEEEECTTCTTSCEECCSCCSHHHHHHHHHHHC
T ss_pred             CCch-hhHhhCCC---cccCEEEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhc
Confidence            9876 67788888   68999999998876  677888888999999987654

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.76  E-value=6.8e-18  Score=129.67  Aligned_cols=100  Identities=27%  Similarity=0.521  Sum_probs=87.8

Q ss_pred             CCeEEcC-hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELD-ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~-~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +.+..++ .++|+++++++++++|.||++||++|+++.|.++++++.+.+    +.|+.+|++++++++++|+|.++|++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~----v~~~~vd~~~~~~l~~~~~v~~~Pt~   87 (114)
T 2oe3_A           12 TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDVDESPDIAKECEVTAMPTF   87 (114)
T ss_dssp             GGSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTCHHHHHHTTCCSBSEE
T ss_pred             hheeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCHHHHHHCCCCcccEE
Confidence            4455554 466788888889999999999999999999999999987643    99999999999999999999999999


Q ss_pred             EEEeCCEEE-eecCCCCHHHHHHHHHh
Q 017971          122 KIFMHGIPT-EYYGPRKAELLVRYLKK  147 (363)
Q Consensus       122 ~~~~~g~~~-~y~g~~~~~~i~~~i~~  147 (363)
                      ++|++|+.+ .+.|.. .+.|.+++.+
T Consensus        88 ~~~~~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           88 VLGKDGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEEETTEEEEEEESSC-HHHHHHHHHT
T ss_pred             EEEeCCeEEEEEeCCC-HHHHHHHHHh
Confidence            999999876 488988 9999999875

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.75  E-value=1.7e-17  Score=128.04  Aligned_cols=105  Identities=25%  Similarity=0.529  Sum_probs=93.0

Q ss_pred             CCCeEEc-ChhhHHHhHcC----CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC
Q 017971           42 DGKVIEL-DESNFDSAISS----FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID  116 (363)
Q Consensus        42 ~~~v~~l-~~~~f~~~l~~----~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~  116 (363)
                      .+.++.+ +.++|++.+..    +++++|.||++||++|+++.|.++++++.+.    ++.++.+|++++++++++|++.
T Consensus         5 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~~~~~v~   80 (118)
T 2vm1_A            5 EGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP----GAIFLKVDVDELKDVAEAYNVE   80 (118)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSHHHHHHTTCC
T ss_pred             CCceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CcEEEEEEcccCHHHHHHcCCC
Confidence            4678888 57999998854    7899999999999999999999999998764    3999999999999999999999


Q ss_pred             cCCEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhcCC
Q 017971          117 AFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       117 ~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~  151 (363)
                      ++|++++|++|+.+. +.| .+.+.+.+++.+.+..
T Consensus        81 ~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           81 AMPTFLFIKDGEKVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             SBSEEEEEETTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             cCcEEEEEeCCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence            999999999998765 677 5899999999988754

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.75  E-value=7e-18  Score=131.05  Aligned_cols=106  Identities=25%  Similarity=0.467  Sum_probs=93.7

Q ss_pred             CCCCeEEcCh-hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           41 IDGKVIELDE-SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        41 ~~~~v~~l~~-~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      ....+..+++ ++|++.++++++++|.||++||++|+.+.|.++++++.+.+.  ++.++.+|++++++++++|+|.++|
T Consensus        13 ~~~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~--~v~~~~vd~d~~~~~~~~~~v~~~P   90 (121)
T 2j23_A           13 PRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD--KVGFYKVDVDEQSQIAQEVGIRAMP   90 (121)
T ss_dssp             CCCCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH--HSEEEEEETTTCHHHHHHHTCCSSS
T ss_pred             CCcceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC--cEEEEEEECcCCHHHHHHcCCCccc
Confidence            3456777766 889999988899999999999999999999999998876543  3899999999999999999999999


Q ss_pred             EEEEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          120 TLKIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       120 t~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      |+++|++|+.+ .+.|. +.+.|.+|+.+.+
T Consensus        91 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEEEETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EEEEEECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence            99999999876 48888 9999999998764

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=3.4e-19  Score=141.73  Aligned_cols=105  Identities=19%  Similarity=0.369  Sum_probs=90.6

Q ss_pred             CCCeEEcChhhHHHhHcCCC--eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC---
Q 017971           42 DGKVIELDESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID---  116 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~~--~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~---  116 (363)
                      .+.+..+++++|++.+.+++  +++|.||++||++|+++.|.|+++++.+.+  .++.|+.|||+++++++++|+|.   
T Consensus         6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~~~~~~~~~~v~~~~   83 (137)
T 2dj0_A            6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC--TGLNFGKVDVGRYTDVSTRYKVSTSP   83 (137)
T ss_dssp             CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCS--SSCEEEECCTTTCHHHHHHTTCCCCS
T ss_pred             CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCeEEEEEeCccCHHHHHHccCcccC
Confidence            45699999999999985544  899999999999999999999999998853  24999999999999999999999   


Q ss_pred             ---cCCEEEEEeCCEEE-eecCCCCHHHHHHHHHhh
Q 017971          117 ---AFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       117 ---~~Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                         ++||+++|++|+.+ .+.|..+.+.|.+|+.+.
T Consensus        84 ~~~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  119 (137)
T 2dj0_A           84 LTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTFSE  119 (137)
T ss_dssp             SSSCSSEEEEESSSSEEEEESCBCSSSCBCCCCCCH
T ss_pred             CcCCCCEEEEEECCEEEEEecCcCchHHHHHHHhcc
Confidence               99999999999866 488888777766665443

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.75  E-value=2.5e-18  Score=132.91  Aligned_cols=102  Identities=11%  Similarity=0.088  Sum_probs=86.0

Q ss_pred             CCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe----CccchhhhhhCCcCc
Q 017971           42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD----ADKYSRLASKQEIDA  117 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd----~~~~~~l~~~~~i~~  117 (363)
                      -..+..++.++|++.+.++++++|.||++||++|+++.|.++++++.+..   .+.++.++    ++++++++++|+|.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~i~~   87 (118)
T 1zma_A           11 IKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA---HIYFINSEEPSQLNDLQAFRSRYGIPT   87 (118)
T ss_dssp             TTTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC---CCEEEETTCGGGHHHHHHHHHHHTCCS
T ss_pred             HhhhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC---eEEEEECCCcCcHHHHHHHHHHcCCCC
Confidence            34678899999999998889999999999999999999999999987642   36555332    233468999999999


Q ss_pred             CCEEEEEeCCEEE-eecCCCCHHHHHHHHH
Q 017971          118 FPTLKIFMHGIPT-EYYGPRKAELLVRYLK  146 (363)
Q Consensus       118 ~Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~  146 (363)
                      +||+++|++|+.+ .+.|..+.+.|.+|+.
T Consensus        88 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           88 VPGFVHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             SCEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             CCeEEEEECCEEEEEecCCCCHHHHHHHhh
Confidence            9999999999876 4899999999999985

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.75  E-value=2e-17  Score=127.28  Aligned_cols=99  Identities=15%  Similarity=0.275  Sum_probs=82.4

Q ss_pred             CCeEEcChhhHHHhHcC-CC--eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           43 GKVIELDESNFDSAISS-FD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~-~~--~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      +.+.++++++|.+.+.+ ++  +++|.|||+||++|+.+.|.++++|+++.    ++.|++||+++.   +++|+|.+.|
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~----~v~f~kvd~d~~---~~~~~v~~~P   75 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP----ETKFVKAIVNSC---IQHYHDNCLP   75 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT----TSEEEEEEGGGT---STTCCGGGCS
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC----CCEEEEEEhHHh---HHHCCCCCCC
Confidence            46889999999997743 33  89999999999999999999999998764    399999999875   5899999999


Q ss_pred             EEEEEeCCEEEe-ecCC-------CCHHHHHHHHHhh
Q 017971          120 TLKIFMHGIPTE-YYGP-------RKAELLVRYLKKF  148 (363)
Q Consensus       120 t~~~~~~g~~~~-y~g~-------~~~~~i~~~i~~~  148 (363)
                      |+++|++|+.+. +.|.       .+.+.|..++.+.
T Consensus        76 T~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           76 TIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             EEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             EEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            999999998774 5554       3566666666543

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.74  E-value=1.4e-17  Score=127.47  Aligned_cols=103  Identities=27%  Similarity=0.488  Sum_probs=91.3

Q ss_pred             CCCeEEc-ChhhHHHhHcC----CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC
Q 017971           42 DGKVIEL-DESNFDSAISS----FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID  116 (363)
Q Consensus        42 ~~~v~~l-~~~~f~~~l~~----~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~  116 (363)
                      .+.+..+ +.++|++.+..    +++++|.||++||++|+.+.|.++++++.+.    ++.+..+|++++++++++|++.
T Consensus         3 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~~~~~~~~v~   78 (113)
T 1ti3_A            3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDELKAVAEEWNVE   78 (113)
T ss_dssp             CCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTCHHHHHHHHCS
T ss_pred             CCceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC----CcEEEEEEccccHHHHHhCCCC
Confidence            4568888 67999998854    7899999999999999999999999998764    4999999999999999999999


Q ss_pred             cCCEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          117 AFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       117 ~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|++++|++|+.+. +.| .+.+.+.+++.+.+
T Consensus        79 ~~Pt~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           79 AMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             STTEEEEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             cccEEEEEeCCEEEEEEec-CCHHHHHHHHHHhh
Confidence            999999999998765 677 68889999998765

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.74  E-value=2.3e-17  Score=131.29  Aligned_cols=106  Identities=23%  Similarity=0.423  Sum_probs=92.6

Q ss_pred             CCCCeEEcC-hhhHHHhHc----CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCc
Q 017971           41 IDGKVIELD-ESNFDSAIS----SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEI  115 (363)
Q Consensus        41 ~~~~v~~l~-~~~f~~~l~----~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i  115 (363)
                      ..+.+..++ .++|++.+.    ++++++|.||++||++|+.+.|.++++++.+.    ++.|+.||++++++++++|+|
T Consensus        22 ~~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~v~~~~~~~~~~~~~v   97 (139)
T 3d22_A           22 AGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP----SLMFLVIDVDELSDFSASWEI   97 (139)
T ss_dssp             SCTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSHHHHHHTTC
T ss_pred             cCCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEeCcccHHHHHHcCC
Confidence            345677775 799999873    57899999999999999999999999998763    399999999999999999999


Q ss_pred             CcCCEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhcCC
Q 017971          116 DAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       116 ~~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~  151 (363)
                      .++||+++|++|+.+. +.|. +.+.|.+++.+.+..
T Consensus        98 ~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A           98 KATPTFFFLRDGQQVDKLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             CEESEEEEEETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred             CcccEEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            9999999999998764 7887 899999999888653

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.74  E-value=2.8e-17  Score=131.35  Aligned_cols=97  Identities=16%  Similarity=0.163  Sum_probs=81.5

Q ss_pred             ChhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC
Q 017971           49 DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH  126 (363)
Q Consensus        49 ~~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~  126 (363)
                      +.++|++.+.  ++++++|.|||+||++|+.+.|.++++++.+.+   ++.|+.||++++++++++|+|.++||+++|++
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~   86 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN---FAVIYLVDITEVPDFNKMYELYDPCTVMFFFR   86 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT---TEEEEEEETTTCCTTTTSSCSCSSCEEEEEET
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEccccCHHHHHHcCCCCCCEEEEEEC
Confidence            5788988763  578999999999999999999999999988754   39999999999999999999999999999999


Q ss_pred             CEEEe----------ecCCCC-HHHHHHHHHhh
Q 017971          127 GIPTE----------YYGPRK-AELLVRYLKKF  148 (363)
Q Consensus       127 g~~~~----------y~g~~~-~~~i~~~i~~~  148 (363)
                      |+.+.          ..|..+ .+++.+++.+.
T Consensus        87 G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~  119 (142)
T 1qgv_A           87 NKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  119 (142)
T ss_dssp             TEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence            98764          234443 66666666554

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.73  E-value=9.3e-18  Score=131.27  Aligned_cols=105  Identities=13%  Similarity=0.124  Sum_probs=90.6

Q ss_pred             eEEcChhhHH-----HhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe--CccchhhhhhCCcCc
Q 017971           45 VIELDESNFD-----SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD--ADKYSRLASKQEIDA  117 (363)
Q Consensus        45 v~~l~~~~f~-----~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd--~~~~~~l~~~~~i~~  117 (363)
                      +..++..+++     ....++++++|.||++||++|+++.|.+.++++.+.   .++.++.||  ++++++++++|+|.+
T Consensus         6 ~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~---~~v~~~~v~~~~d~~~~~~~~~~v~~   82 (126)
T 2l57_A            6 IKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE---GKFNIYYARLEEEKNIDLAYKYDANI   82 (126)
T ss_dssp             SSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS---SSCEEEEEETTSSHHHHHHHHTTCCS
T ss_pred             cCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc---CCeEEEEEeCCCCchHHHHHHcCCcc
Confidence            3445555555     555677899999999999999999999999998875   349999999  999999999999999


Q ss_pred             CCEEEEEe-CCEEE-eecCCCCHHHHHHHHHhhcCCC
Q 017971          118 FPTLKIFM-HGIPT-EYYGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       118 ~Pt~~~~~-~g~~~-~y~g~~~~~~i~~~i~~~~~~~  152 (363)
                      +|++++|. +|+.+ .+.|..+.+.|.+++.+...+.
T Consensus        83 ~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A           83 VPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKE  119 (126)
T ss_dssp             SSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCCCC
T ss_pred             eeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhccc
Confidence            99999998 78765 5899999999999999987654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.72  E-value=6.6e-17  Score=124.92  Aligned_cols=105  Identities=24%  Similarity=0.435  Sum_probs=88.0

Q ss_pred             CCeEEc--ChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           43 GKVIEL--DESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        43 ~~v~~l--~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      +.+..+  +.++|++.+ +++++++|.||++||++|+.+.|.++++++.+    .++.|+.||++++++++++|+|.++|
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~----~~v~~~~vd~~~~~~~~~~~~i~~~P   78 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN----KDVTFIKVDVDKNGNAADAYGVSSIP   78 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC----TTSEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC----CCeEEEEEECCCCHHHHHhcCCCCCC
Confidence            346777  678998654 67889999999999999999999999999876    24999999999999999999999999


Q ss_pred             EEEEEeC----CEEEe-ecCCCCHHHHHHHHHhhcCCC
Q 017971          120 TLKIFMH----GIPTE-YYGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       120 t~~~~~~----g~~~~-y~g~~~~~~i~~~i~~~~~~~  152 (363)
                      ++++|++    |+.+. +.|..+ ++|.+.+.++..++
T Consensus        79 t~~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~~~~~  115 (118)
T 2f51_A           79 ALFFVKKEGNEIKTLDQFVGADV-SRIKADIEKFKHHH  115 (118)
T ss_dssp             EEEEEEEETTEEEEEEEEESCCH-HHHHHHHHHHC---
T ss_pred             EEEEEeCCCCcceEEEeecCCCH-HHHHHHHHHhhhcc
Confidence            9999988    77664 778664 56999998887653

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.72  E-value=2.8e-17  Score=129.90  Aligned_cols=106  Identities=20%  Similarity=0.427  Sum_probs=91.2

Q ss_pred             cCCCCCeEEcCh-hhHHHhHcC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCc
Q 017971           39 FKIDGKVIELDE-SNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEI  115 (363)
Q Consensus        39 ~~~~~~v~~l~~-~~f~~~l~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i  115 (363)
                      ....+.++++++ ++|++.+.+  +++++|.||++||++|+++.|.++++++.+     ++.++.||++++++++++|+|
T Consensus        16 ~~~~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-----~v~~~~vd~~~~~~l~~~~~v   90 (133)
T 3cxg_A           16 FQGQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-----YVTLVDIDVDIHPKLNDQHNI   90 (133)
T ss_dssp             EETTEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-----ECEEEEEETTTCHHHHHHTTC
T ss_pred             ccCCccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-----CEEEEEEeccchHHHHHhcCC
Confidence            334567899986 889998854  469999999999999999999999988654     389999999999999999999


Q ss_pred             CcCCEEEEEe--CCE--EE-eecCCCCHHHHHHHHHhhcC
Q 017971          116 DAFPTLKIFM--HGI--PT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       116 ~~~Pt~~~~~--~g~--~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      .++||+++|+  +|+  .+ .+.|. +.+.|.+++.+.+.
T Consensus        91 ~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           91 KALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             CCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            9999999997  887  44 47787 89999999988764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.71  E-value=1e-16  Score=139.86  Aligned_cols=193  Identities=13%  Similarity=0.103  Sum_probs=135.2

Q ss_pred             hhHHHhHc-CCCeEEEEEECCC--ChhhhhHHHHHHHHHHHhhcCCCC--eEEEEEeCccchhhhhhCCcCcCCEEEEEe
Q 017971           51 SNFDSAIS-SFDYILVDFYAPW--CGHCKRLAPQLDEAAPILAKLKEP--IVIAKVDADKYSRLASKQEIDAFPTLKIFM  125 (363)
Q Consensus        51 ~~f~~~l~-~~~~~lv~fy~~~--C~~C~~~~~~~~~~a~~~~~~~~~--v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  125 (363)
                      +.+++++. -.++++|.||++|  |++|+.+.|.++++|+......++  +.|+.+|+++++++|++|+|.++||+.+| 
T Consensus        15 ~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~-   93 (243)
T 2hls_A           15 RELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL-   93 (243)
T ss_dssp             HHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET-
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE-
Confidence            34555663 3479999999999  999999999999999864221222  99999999999999999999999999999 


Q ss_pred             CCEEEeecCCCCHHHHHHHHHhhcC--CCceecCChHHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHHhh-
Q 017971          126 HGIPTEYYGPRKAELLVRYLKKFVA--PDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYK-  194 (363)
Q Consensus       126 ~g~~~~y~g~~~~~~i~~~i~~~~~--~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~-  194 (363)
                      +| ...|.|.++.+.+.+|+.....  .....+ ++..++. +.+.... ++++.|+..+        +.+..++..+. 
T Consensus        94 ~g-~~~~~G~~~~~~l~~fv~~~l~~~~~~~~l-~~~~~~~-~~~~~~~-~~vv~F~a~wC~~C~~~~p~l~~la~~~~~  169 (243)
T 2hls_A           94 GG-EVRWTGIPAGEEIRALVEVIMRLSEDESGL-EDATKEA-LKSLKGR-VHIETIITPSCPYCPYAVLLAHMFAYEAWK  169 (243)
T ss_dssp             TT-TEEEESCCCTTHHHHHHHHHHHHHTTCCCC-CHHHHHH-HHHCCSC-EEEEEEECSSCSSHHHHHHHHHHHHHHHHH
T ss_pred             CC-ceeEcCCCcHHHHHHHHHHHHhccCCCCCC-CHHHHHH-HHHcCCC-cEEEEEECCCCCCcHHHHHHHHHHHHHccc
Confidence            67 7789999888899999877642  112223 3333433 3332222 4555555332        33555666552 


Q ss_pred             ---hhhHHH-HhhhcchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhcCC
Q 017971          195 ---KKAWFA-VAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP  253 (363)
Q Consensus       195 ---~~~~~~-~~~~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p  253 (363)
                         ....+. +..+..++++..|++.++|++++  +  +. ..+.|..+.++|.+||.+..-+
T Consensus       170 ~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~--G~-~~~~G~~~~~~l~~~l~~~~~~  227 (243)
T 2hls_A          170 QGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--N--GY-LVFVGVPYEEDFLDYVKSAAEG  227 (243)
T ss_dssp             TTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--T--TE-EEEESCCCHHHHHHHHHHHHTT
T ss_pred             ccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--C--CE-EEEeCCCCHHHHHHHHHHHhhc
Confidence               112221 11234567888999999999877  2  33 3488999999999999987533

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=1.3e-16  Score=126.33  Aligned_cols=101  Identities=15%  Similarity=0.219  Sum_probs=86.5

Q ss_pred             CCCeEEcChhhHHHhHcC---CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           42 DGKVIELDESNFDSAISS---FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~---~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      .+.+..++.++|.+.+.+   +++++|.||++||++|+.+.|.|+++++.+.    ++.|+.||++++.   ++|+|.++
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~~~~~---~~~~i~~~   81 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP----ETKFVKAIVNSCI---EHYHDNCL   81 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS----SEEEEEECCSSSC---SSCCSSCC
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CcEEEEEEhhcCc---ccCCCCCC
Confidence            467999999999998853   2689999999999999999999999998763    4999999999875   78999999


Q ss_pred             CEEEEEeCCEEEe-ecCCC-------CHHHHHHHHHhhc
Q 017971          119 PTLKIFMHGIPTE-YYGPR-------KAELLVRYLKKFV  149 (363)
Q Consensus       119 Pt~~~~~~g~~~~-y~g~~-------~~~~i~~~i~~~~  149 (363)
                      ||+++|++|+.+. +.|..       +.+.|.+++.++.
T Consensus        82 Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           82 PTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             SEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             CEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            9999999997654 66754       7888888888763

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.69  E-value=1.5e-16  Score=137.32  Aligned_cols=105  Identities=19%  Similarity=0.224  Sum_probs=91.8

Q ss_pred             eEEcChhhHHHhHcCCCeE-EEEEECCCChhhhhHHHHHHHHHHHhhcC-CCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           45 VIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKL-KEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        45 v~~l~~~~f~~~l~~~~~~-lv~fy~~~C~~C~~~~~~~~~~a~~~~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      +..+++++++++.+.++++ +|.||++||++|+++.|.|.++++.+.+. ..++.++.|||+++++++++|+|.++||++
T Consensus       118 ~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  197 (226)
T 1a8l_A          118 ETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIV  197 (226)
T ss_dssp             CCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEE
T ss_pred             CCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEE
Confidence            4567889998887666666 99999999999999999999999988621 124999999999999999999999999999


Q ss_pred             EEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          123 IFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       123 ~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      +|++|+.. .|.|.++.+.|.+|+.+.+
T Consensus       198 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          198 IQVNGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence            99999765 5899999999999998764

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.51  E-value=2e-18  Score=130.33  Aligned_cols=102  Identities=33%  Similarity=0.623  Sum_probs=90.4

Q ss_pred             CeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .+.++++++|++.+ +++++++|.||++||++|+.+.|.+.++++.+.+   ++.++.+|++++++++++|++.++|+++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   78 (106)
T 2yj7_A            2 SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG---KVKVVKVNVDENPNTAAQYGIRSIPTLL   78 (106)
Confidence            36788999998765 6778999999999999999999999999987754   4999999999999999999999999999


Q ss_pred             EEeCCEEE-eecCCCCHHHHHHHHHhh
Q 017971          123 IFMHGIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       123 ~~~~g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                      +|++|+.+ .+.|..+.+.+.+|+.+.
T Consensus        79 ~~~~g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           79 LFKNGQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            99888765 588999999999988764

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.68  E-value=7.5e-18  Score=157.99  Aligned_cols=111  Identities=23%  Similarity=0.329  Sum_probs=93.1

Q ss_pred             cCCCCCeEEcChhhHHHhHcCC--CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCC-----CeEEEEEeCccchhhhh
Q 017971           39 FKIDGKVIELDESNFDSAISSF--DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE-----PIVIAKVDADKYSRLAS  111 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~~--~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~-----~v~~~~vd~~~~~~l~~  111 (363)
                      +...+.|+.|++++|++.+.++  ++++|.|||+||++|+++.|.|+++++.+.....     .+.|+.|||++++++|+
T Consensus        19 ~~~~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~   98 (470)
T 3qcp_A           19 FHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCR   98 (470)
T ss_dssp             CTTCTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHH
T ss_pred             cCCCCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHH
Confidence            4457889999999999988543  7899999999999999999999999998864322     59999999999999999


Q ss_pred             hCCcCcCCEEEEEeCCE---EEeecCCCCHHHHHHHHHhhcC
Q 017971          112 KQEIDAFPTLKIFMHGI---PTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       112 ~~~i~~~Pt~~~~~~g~---~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +|+|.++||+++|.+|.   ...|.|.++.+.| +|+.+++.
T Consensus        99 ~y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L-~fI~k~l~  139 (470)
T 3qcp_A           99 KYDINFVPRLFFFYPRDSCRSNEECGTSSLEHV-AFENSHLE  139 (470)
T ss_dssp             HTTCCSSCEEEEEEESSCCCTTSCCCCCCEEEE-ECSCTTCC
T ss_pred             HcCCCccCeEEEEECCCceEEEEeeCCCCHHHH-HHHHHhcC
Confidence            99999999999997553   3468898777766 66655553

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=1.4e-16  Score=125.19  Aligned_cols=105  Identities=28%  Similarity=0.450  Sum_probs=89.3

Q ss_pred             eEEcChhhHHHhH----cCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCc
Q 017971           45 VIELDESNFDSAI----SSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDAD--KYSRLASKQEI  115 (363)
Q Consensus        45 v~~l~~~~f~~~l----~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i  115 (363)
                      .+.+++.+|++.+    .++++++|.||++||++|+++.|.+   .++++.+...   +.++.+|++  .+..++++|+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~~~~~~~~~v   84 (130)
T 2kuc_A            8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKGEGVELRKKYGV   84 (130)
T ss_dssp             CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSSTTHHHHHHHTTC
T ss_pred             CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCcchHHHHHHcCC
Confidence            4556778888877    3678999999999999999999999   7777666543   889999998  57899999999


Q ss_pred             CcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcCCC
Q 017971          116 DAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       116 ~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~~~  152 (363)
                      .++|++++| ++|+.+ .+.|..+.+.+.+++.+...++
T Consensus        85 ~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  123 (130)
T 2kuc_A           85 HAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESE  123 (130)
T ss_dssp             CSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            999999999 578765 5899999999999999987654

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.67  E-value=2e-15  Score=130.47  Aligned_cols=193  Identities=13%  Similarity=0.123  Sum_probs=148.3

Q ss_pred             CeEEc-ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l-~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .++.| +.+++++++++++.++|.|+++|   |..+.++|.++|+.+.    ++.|+...   ++++|+++++.+ |+++
T Consensus        10 ~~~~l~s~~~~~~~l~~~~v~vVgff~~~---~~~~~~~f~~~A~~l~----~~~F~~t~---~~~v~~~~~v~~-p~i~   78 (227)
T 4f9z_D           10 EPTWLTDVPAAMEFIAATEVAVIGFFQDL---EIPAVPILHSMVQKFP----GVSFGIST---DSEVLTHYNITG-NTIC   78 (227)
T ss_dssp             CCEECCSHHHHHHHHHTSSEEEEEECSCS---CSTHHHHHHHHTTTCT----TSEEEEEC---CHHHHHHTTCCS-SEEE
T ss_pred             CCeeeCCHHHHHHHHhcCCeEEEEEecCC---CchhHHHHHHHHHhCC----CceEEEEC---CHHHHHHcCCCC-CeEE
Confidence            34555 66999999999999999999998   5689999999998873    38888754   788999999998 9999


Q ss_pred             EEeCC--EEEeecC----CCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecC-C---h----hHHHH
Q 017971          123 IFMHG--IPTEYYG----PRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGL-D---E----SVMSN  188 (363)
Q Consensus       123 ~~~~g--~~~~y~g----~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~-~---~----~~~~~  188 (363)
                      +|+++  ....|.|    .++.+.|.+|+.....|.+.+++. .++.++.+....  .+++.|.. .   .    +.+++
T Consensus        79 lfk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t~-~n~~~~~~~~~~--~~~l~f~~~~~~~~~~~~~~~~~  155 (227)
T 4f9z_D           79 LFRLVDNEQLNLEDEDIESIDATKLSRFIEINSLHMVTEYNP-VTVIGLFNSVIQ--IHLLLIMNKASPEYEENMHRYQK  155 (227)
T ss_dssp             EEETTTTEEEEECHHHHHTCCHHHHHHHHHHHCCCSEEECCH-HHHHHHHHSSCC--EEEEEEECTTSTTHHHHHHHHHH
T ss_pred             EEEecCcccccccccccCCCCHHHHHHHHHHhCCCceeecCc-ccHHHHhccCCc--eEEEEEEcCCcchHHHHHHHHHH
Confidence            99973  5667874    899999999999999999999976 457787765532  23344422 1   1    34778


Q ss_pred             HHHHhhhhhHHHHhhh---cchhhhhhcCCC--CCCeEEEEcCCCCCcccc-cCCCCHHHHHHHHHhh
Q 017971          189 LALKYKKKAWFAVAKD---FSEDTMVLYDFD--KVPALVALQPSYNEHNIF-YGPFDEEFLEEFIKQN  250 (363)
Q Consensus       189 ~a~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~p~iv~~~~~~~~~~~~-~g~~~~~~l~~fi~~~  250 (363)
                      +|+.+++...|..+..   ....+...+|+.  ..|+++++....+....+ .+.++.+.|.+|+++.
T Consensus       156 vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~  223 (227)
T 4f9z_D          156 AAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGF  223 (227)
T ss_dssp             HHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHH
T ss_pred             HHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHH
Confidence            8999988766655422   133567889998  789999998654433333 3789999999999874

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.67  E-value=1.6e-16  Score=135.93  Aligned_cols=102  Identities=22%  Similarity=0.314  Sum_probs=88.3

Q ss_pred             CCCeEEc-ChhhHHHhHcCC---CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           42 DGKVIEL-DESNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        42 ~~~v~~l-~~~~f~~~l~~~---~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      .+.|..+ +.++|.+.+.+.   ++++|.||++||++|+.+.|.|.++++.+.    .+.|+.||++ ++.++++|+|.+
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~----~v~f~~vd~~-~~~l~~~~~i~~  172 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRAS-NTGAGDRFSSDV  172 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHH-HHTCSTTSCGGG
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC----CeEEEEEECC-cHHHHHHCCCCC
Confidence            4678999 899999988443   799999999999999999999999998763    4999999999 889999999999


Q ss_pred             CCEEEEEeCCEEE-eecCCCC-------HHHHHHHHHhh
Q 017971          118 FPTLKIFMHGIPT-EYYGPRK-------AELLVRYLKKF  148 (363)
Q Consensus       118 ~Pt~~~~~~g~~~-~y~g~~~-------~~~i~~~i~~~  148 (363)
                      +||+++|++|+.+ .+.|..+       .+.|.+|+.++
T Consensus       173 ~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          173 LPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             CSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CCEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            9999999999876 4777665       37788887765

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.66  E-value=3.5e-16  Score=151.26  Aligned_cols=111  Identities=34%  Similarity=0.594  Sum_probs=97.4

Q ss_pred             CCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCC
Q 017971           41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP  119 (363)
Q Consensus        41 ~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P  119 (363)
                      .++.|..|++++|++.+ +.+++++|.||||||++|+.+.|.|+++++.+.....++.++.+||+.+... + |+|.++|
T Consensus       356 ~~~~v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~P  433 (504)
T 2b5e_A          356 QDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYP  433 (504)
T ss_dssp             CSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSS
T ss_pred             ccccceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecC
Confidence            45789999999999987 5678999999999999999999999999998873344699999999988754 4 9999999


Q ss_pred             EEEEEeCCE---EEeecCCCCHHHHHHHHHhhcCCCc
Q 017971          120 TLKIFMHGI---PTEYYGPRKAELLVRYLKKFVAPDV  153 (363)
Q Consensus       120 t~~~~~~g~---~~~y~g~~~~~~i~~~i~~~~~~~v  153 (363)
                      |+++|++|+   ...|.|.++.+.|.+|+.++....+
T Consensus       434 t~~~~~~G~~~~~~~~~G~~~~~~l~~~i~~~~~~~~  470 (504)
T 2b5e_A          434 TIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDV  470 (504)
T ss_dssp             EEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTCC
T ss_pred             eEEEEeCCceecceEecCCCCHHHHHHHHHhcCCCCC
Confidence            999999885   4579999999999999999987654

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.64  E-value=6e-16  Score=122.31  Aligned_cols=99  Identities=20%  Similarity=0.329  Sum_probs=84.7

Q ss_pred             cChhhHHHhHcC--CCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeC----ccchhhhhhCCcCcC
Q 017971           48 LDESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDA----DKYSRLASKQEIDAF  118 (363)
Q Consensus        48 l~~~~f~~~l~~--~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~----~~~~~l~~~~~i~~~  118 (363)
                      .+.++++..+.+  +++++|.||++||++|+++.|.+   .++++.++    ++.++.||+    +.+.+++++|+|.++
T Consensus        17 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~----~~~~~~vd~~~~~~~~~~l~~~~~v~~~   92 (134)
T 2fwh_A           17 KTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA----DTVLLQANVTANDAQDVALLKHLNVLGL   92 (134)
T ss_dssp             CSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT----TSEEEEEECTTCCHHHHHHHHHTTCCSS
T ss_pred             cCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc----CcEEEEEeCCCCcchHHHHHHHcCCCCC
Confidence            356778887743  78999999999999999999999   88887764    299999999    667899999999999


Q ss_pred             CEEEEE-eCCEEE---eecCCCCHHHHHHHHHhhcC
Q 017971          119 PTLKIF-MHGIPT---EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       119 Pt~~~~-~~g~~~---~y~g~~~~~~i~~~i~~~~~  150 (363)
                      |++++| ++|+.+   .+.|..+.+.|.+++.+..+
T Consensus        93 Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~  128 (134)
T 2fwh_A           93 PTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP  128 (134)
T ss_dssp             SEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred             CEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence            999999 788875   68999999999999987654

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.64  E-value=7.8e-16  Score=121.49  Aligned_cols=104  Identities=17%  Similarity=0.214  Sum_probs=93.6

Q ss_pred             eEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc--CCEEE
Q 017971           45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA--FPTLK  122 (363)
Q Consensus        45 v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt~~  122 (363)
                      +.++|+++|++.++.+.+++|.||++ |++|+.+.|.++++|+++++.   +.|+.+|.++++.++++|||.+  .||++
T Consensus         8 v~~~t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~~~~~a~~~gi~~~~iPtl~   83 (133)
T 2djk_A            8 IGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAKAFGAHAGNLNLKTDKFPAFA   83 (133)
T ss_dssp             SEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTTGGGTTTTTCCSSSSSEEE
T ss_pred             eeccChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchHHhHHHHHHcCCCcccCCEEE
Confidence            78999999999988888999999999 899999999999999987654   9999999999999999999999  99999


Q ss_pred             EEeC--CEEEeec--CCCCHHHHHHHHHhhcCCC
Q 017971          123 IFMH--GIPTEYY--GPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       123 ~~~~--g~~~~y~--g~~~~~~i~~~i~~~~~~~  152 (363)
                      +|++  |+.+...  |..+.+.|.+|+.+++...
T Consensus        84 i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gk  117 (133)
T 2djk_A           84 IQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGK  117 (133)
T ss_dssp             EECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTC
T ss_pred             EEecCcCcccCCCCccccCHHHHHHHHHHHHcCC
Confidence            9987  7666554  9999999999999887533

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.64  E-value=8.7e-16  Score=111.01  Aligned_cols=82  Identities=26%  Similarity=0.378  Sum_probs=74.8

Q ss_pred             CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHH
Q 017971           61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAEL  140 (363)
Q Consensus        61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~  140 (363)
                      .+.+|.||++||++|+++.|.++++++.+.+   ++.+..+|++++++++++|++.++|++++  +|+. .+.|..+.+.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-~~~G~~~~~~   76 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD---AVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV-EFIGAPTKEA   76 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS---SEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE-ECCSSSSSHH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC---ceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE-eeecCCCHHH
Confidence            4689999999999999999999999987753   49999999999999999999999999998  8877 8899889999


Q ss_pred             HHHHHHhh
Q 017971          141 LVRYLKKF  148 (363)
Q Consensus       141 i~~~i~~~  148 (363)
                      +.+++.+.
T Consensus        77 l~~~l~~~   84 (85)
T 1fo5_A           77 LVEAIKKR   84 (85)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999875

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.64  E-value=1.1e-15  Score=132.34  Aligned_cols=103  Identities=20%  Similarity=0.261  Sum_probs=87.8

Q ss_pred             CCCeEEc-ChhhHHHhHc---CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           42 DGKVIEL-DESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        42 ~~~v~~l-~~~~f~~~l~---~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      .+.|..+ +.++|.+.+.   .+++++|.||++||++|+.+.|.|.++++.+.    .+.|+.||+++ +.++++|+|.+
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~----~v~f~kVd~d~-~~l~~~~~I~~  185 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP----MVKFCKIKASN-TGAGDRFSSDV  185 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT----TSEEEEEEHHH-HCCTTSSCTTT
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CCEEEEEeCCc-HHHHHHCCCCC
Confidence            4678999 7899999984   36899999999999999999999999998764    39999999987 78999999999


Q ss_pred             CCEEEEEeCCEEEe-ecCC-------CCHHHHHHHHHhhc
Q 017971          118 FPTLKIFMHGIPTE-YYGP-------RKAELLVRYLKKFV  149 (363)
Q Consensus       118 ~Pt~~~~~~g~~~~-y~g~-------~~~~~i~~~i~~~~  149 (363)
                      +||+++|++|+.+. +.|.       .+.+.|..|+.++.
T Consensus       186 ~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g  225 (245)
T 1a0r_P          186 LPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYG  225 (245)
T ss_dssp             CSEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred             CCEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHcC
Confidence            99999999998763 4442       45677888887763

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.63  E-value=1.4e-15  Score=120.00  Aligned_cols=93  Identities=20%  Similarity=0.380  Sum_probs=79.9

Q ss_pred             HHHhHcCCCeEEEEEECCCChhhhhHHHHHH--HHHHHhhcCCCCeEEEEEeC---ccchhhhhhCCc---CcCCEEEEE
Q 017971           53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLD--EAAPILAKLKEPIVIAKVDA---DKYSRLASKQEI---DAFPTLKIF  124 (363)
Q Consensus        53 f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~--~~a~~~~~~~~~v~~~~vd~---~~~~~l~~~~~i---~~~Pt~~~~  124 (363)
                      +.....++++++|.||++||++|+.+.|.|.  ++++.+.+.   +.++.||+   +++++++++|+|   .++|++++|
T Consensus        22 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~   98 (133)
T 3fk8_A           22 LAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVV   98 (133)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEE
T ss_pred             HHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcccchHHHHHHhCCccCCccceEEEE
Confidence            3333466899999999999999999999999  999887543   99999999   899999999999   999999999


Q ss_pred             -eCCEEEe-ecC-------CCCHHHHHHHHHhh
Q 017971          125 -MHGIPTE-YYG-------PRKAELLVRYLKKF  148 (363)
Q Consensus       125 -~~g~~~~-y~g-------~~~~~~i~~~i~~~  148 (363)
                       ++|+.+. +.|       ..+.+.+.+|+.+.
T Consensus        99 d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A           99 NSDGKVRYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             CTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence             7887664 667       57888999888765

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.63  E-value=3.9e-17  Score=128.27  Aligned_cols=108  Identities=29%  Similarity=0.537  Sum_probs=93.2

Q ss_pred             cCCCCCeEEc-ChhhHHHhHc----CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC
Q 017971           39 FKIDGKVIEL-DESNFDSAIS----SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ  113 (363)
Q Consensus        39 ~~~~~~v~~l-~~~~f~~~l~----~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~  113 (363)
                      +...+.+..+ +.++|++.+.    ++++++|.||++||++|+++.|.+.++++.+.    ++.++.+|++++++++++|
T Consensus        10 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~~~~~~~   85 (130)
T 1wmj_A           10 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP----GAVFLKVDVDELKEVAEKY   85 (130)
T ss_dssp             CSSCSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT----TBCCEECCTTTSGGGHHHH
T ss_pred             cccCcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CCEEEEEeccchHHHHHHc
Confidence            3445678888 4589999885    37899999999999999999999999998764    3899999999999999999


Q ss_pred             CcCcCCEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhcCC
Q 017971          114 EIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       114 ~i~~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~  151 (363)
                      +|.++|++++|++|+.+. +.| .+.+.|.+++.+.+..
T Consensus        86 ~v~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           86 NVEAMPTFLFIKDGAEADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             TCCSSCCCCBCTTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             CCCccceEEEEeCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence            999999999999887664 677 5788999999888764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.62  E-value=1.4e-15  Score=118.25  Aligned_cols=100  Identities=18%  Similarity=0.253  Sum_probs=85.3

Q ss_pred             CeEEcChhhHHHhHcC--CCeEEEEEECC-------CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC-------ccch
Q 017971           44 KVIELDESNFDSAISS--FDYILVDFYAP-------WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA-------DKYS  107 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~--~~~~lv~fy~~-------~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-------~~~~  107 (363)
                      .+...+.++|++.+.+  +++++|.||++       ||++|+.+.|.+.++++.+.+   ++.|+.||+       +.++
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~---~~~~~~vd~~~~~~~~d~~~   82 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE---GCVFIYCQVGEKPYWKDPNN   82 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT---TEEEEEEECCCHHHHHCTTC
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC---CcEEEEEECCCchhhhchhH
Confidence            4667789999998865  78999999999       999999999999999877643   499999999       7889


Q ss_pred             hhhhhCCcCcCCEEEEEeCCEEEe-ecCCCCHHHHHHHHHh
Q 017971          108 RLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKK  147 (363)
Q Consensus       108 ~l~~~~~i~~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~  147 (363)
                      +++++|+|.++||+++|.++..+. +.| .+.+.|.+|+.+
T Consensus        83 ~~~~~~~i~~~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           83 DFRKNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHHHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHHC
T ss_pred             HHHHHCCCCeeCEEEEEcCCceEecccc-CCHHHHHHHHhc
Confidence            999999999999999998876554 444 567788888764

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.61  E-value=1.1e-15  Score=110.52  Aligned_cols=82  Identities=22%  Similarity=0.301  Sum_probs=74.3

Q ss_pred             eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHH
Q 017971           62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELL  141 (363)
Q Consensus        62 ~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i  141 (363)
                      ..+|.||++||++|+++.|.++++++.+.+   ++.+..+|++++++++++|++.++|++++  +|+. .+.|..+.+.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-~~~G~~~~~~l   76 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD---KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV-RFVGAPSREEL   76 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCS---SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE-EEECSSCCHHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcC---CeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE-EEccCCCHHHH
Confidence            468999999999999999999999988754   49999999999999999999999999998  7776 88998899999


Q ss_pred             HHHHHhhc
Q 017971          142 VRYLKKFV  149 (363)
Q Consensus       142 ~~~i~~~~  149 (363)
                      .+++.+.+
T Consensus        77 ~~~l~~~l   84 (85)
T 1nho_A           77 FEAINDEM   84 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99998764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.61  E-value=1.9e-15  Score=130.68  Aligned_cols=101  Identities=19%  Similarity=0.209  Sum_probs=89.1

Q ss_pred             CeEEcChhhHHHhHcCCCeE-EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~-lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .+..+++++|+++++.++++ +|.||++||++|+.+.|.|+++++.+.    ++.++.+||+++++++++|+|.++||++
T Consensus       119 ~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~----~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  194 (229)
T 2ywm_A          119 RKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND----YITSKVIDASENQDLAEQFQVVGVPKIV  194 (229)
T ss_dssp             TCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT----TEEEEEEEGGGCHHHHHHTTCCSSSEEE
T ss_pred             CccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC----CeEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            46778999999988666665 889999999999999999999998762    4999999999999999999999999999


Q ss_pred             EEeCCEEEeecCCCCHHHHHHHHHhhcC
Q 017971          123 IFMHGIPTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       123 ~~~~g~~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +  +|+...|.|.++.+.|.+|+.+.+.
T Consensus       195 ~--~G~~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          195 I--NKGVAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             E--GGGTEEEESCCCHHHHHHHHHHHHH
T ss_pred             E--CCEEEEeeCCCCHHHHHHHHHHHhh
Confidence            8  7775569999999999999987753

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.61  E-value=5.3e-15  Score=110.57  Aligned_cols=98  Identities=16%  Similarity=0.132  Sum_probs=83.9

Q ss_pred             CCeEEc-ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCcCc
Q 017971           43 GKVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDA  117 (363)
Q Consensus        43 ~~v~~l-~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~  117 (363)
                      ++...| +.++|+++++++++++|.|+|+||+.|+...|.++++++.  .   ++.++.||.+++++    ++++++|++
T Consensus         6 ~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~---~v~~~~vdVde~r~~Sn~IA~~~~V~h   80 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE--R---DMDGYYLIVQQERDLSDYIAKKTNVKH   80 (112)
T ss_dssp             GCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--H---TCCEEEEEGGGGHHHHHHHHHHHTCCC
T ss_pred             cceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--C---CceEEEEEeecCchhhHHHHHHhCCcc
Confidence            456677 5578999998899999999999999999999999999873  2   38999999999977    799999995


Q ss_pred             -CCEEEEEeCCEEEe--ecCCCCHHHHHHHH
Q 017971          118 -FPTLKIFMHGIPTE--YYGPRKAELLVRYL  145 (363)
Q Consensus       118 -~Pt~~~~~~g~~~~--y~g~~~~~~i~~~i  145 (363)
                       .|++++|++|+.+-  -.|..+.+.|.+.+
T Consensus        81 ~sPq~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           81 ESPQAFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             CSSEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             CCCeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence             99999999998774  56778888777653

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.60  E-value=9.9e-15  Score=127.24  Aligned_cols=103  Identities=18%  Similarity=0.206  Sum_probs=86.3

Q ss_pred             cChhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcC-CCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe
Q 017971           48 LDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL-KEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM  125 (363)
Q Consensus        48 l~~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  125 (363)
                      +++++++.+.+ .++.+++.||+|||++|++..|.|++++..+... .+++.++.||++++++++++|+|.++||+++  
T Consensus       125 l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--  202 (243)
T 2hls_A          125 LEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--  202 (243)
T ss_dssp             CCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--
T ss_pred             CCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--
Confidence            55666665543 3567899999999999999999999999887421 1359999999999999999999999999988  


Q ss_pred             CCEEEeecCCCCHHHHHHHHHhhcCCCc
Q 017971          126 HGIPTEYYGPRKAELLVRYLKKFVAPDV  153 (363)
Q Consensus       126 ~g~~~~y~g~~~~~~i~~~i~~~~~~~v  153 (363)
                      +|+.. |.|.++.++|.+|+.+.+++..
T Consensus       203 ~G~~~-~~G~~~~~~l~~~l~~~~~~~~  229 (243)
T 2hls_A          203 NGYLV-FVGVPYEEDFLDYVKSAAEGRL  229 (243)
T ss_dssp             TTEEE-EESCCCHHHHHHHHHHHHTTCC
T ss_pred             CCEEE-EeCCCCHHHHHHHHHHHhhccc
Confidence            78754 9999999999999999887543

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.58  E-value=1.1e-15  Score=115.30  Aligned_cols=76  Identities=22%  Similarity=0.287  Sum_probs=65.1

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc------cchhhhhhCCcCcCCEEEEEeCCEEEeec
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD------KYSRLASKQEIDAFPTLKIFMHGIPTEYY  133 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~------~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~  133 (363)
                      +++.+|.|||+||++|+++.|.|+++++.++         .|||+      +++++|++|+|.++||+++  +|+.  |.
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~--~~   78 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT--YT   78 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC---------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE--EE
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC---------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE--ec
Confidence            3567999999999999999999999985542         57777      6889999999999999877  7764  89


Q ss_pred             CCCCHHHHHHHHHhh
Q 017971          134 GPRKAELLVRYLKKF  148 (363)
Q Consensus       134 g~~~~~~i~~~i~~~  148 (363)
                      |.++.+.|.+|+...
T Consensus        79 G~~~~~~l~~~~~~~   93 (106)
T 3kp8_A           79 GVRSLEALAVASGYP   93 (106)
T ss_dssp             SCCCHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHhCCc
Confidence            999999999998544

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.53  E-value=1.5e-14  Score=119.25  Aligned_cols=102  Identities=16%  Similarity=0.306  Sum_probs=82.2

Q ss_pred             eEEcChhhHHHhH----cCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCccchhh--------
Q 017971           45 VIELDESNFDSAI----SSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKYSRL--------  109 (363)
Q Consensus        45 v~~l~~~~f~~~l----~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l--------  109 (363)
                      ....+..+|++.+    .++++++|.|||+||++|+++.+.+   .++.+.+++   ++.++.||+++++++        
T Consensus        28 ~~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~---~~~~v~v~~d~~~~~~~~~~~~~  104 (172)
T 3f9u_A           28 EVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN---DYVLITLYVDNKTPLTEPVKIME  104 (172)
T ss_dssp             CCCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEETTCCCEEEEEEEEEE
T ss_pred             ccccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC---CEEEEEEecCcccccchhhhhhh
Confidence            3445666777766    6789999999999999999986555   556655554   399999999988766        


Q ss_pred             ------------------hhhCCcCcCCEEEEE-eCCEEE-eecCCCC-HHHHHHHHHhhc
Q 017971          110 ------------------ASKQEIDAFPTLKIF-MHGIPT-EYYGPRK-AELLVRYLKKFV  149 (363)
Q Consensus       110 ------------------~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~-~~~i~~~i~~~~  149 (363)
                                        +++|+|.++||++++ ++|+.+ .+.|..+ .+.+.+++.+.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          105 NGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             TTEEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence                              789999999999999 678765 4789998 999999998764

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.29  E-value=7.3e-16  Score=121.04  Aligned_cols=98  Identities=17%  Similarity=0.311  Sum_probs=82.3

Q ss_pred             hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeC--ccchhhhhhCCcCcCCEEEEE
Q 017971           50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDA--DKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~--~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      ++.++....++++++|.||++||++|+.+.|.+   .++++.+.+   ++.++.||+  +++++++++|+|.++||+++|
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~   85 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA---RFVVASVSVDTPEGQELARRYRVPGTPTFVFL   85 (130)
Confidence            345555566778999999999999999999999   888876644   488999999  466899999999999999999


Q ss_pred             --eCCEE--E-eecCCCCHHHHHHHHHhhcC
Q 017971          125 --MHGIP--T-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       125 --~~g~~--~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                        ++|+.  + .+.|..+.+.+.+++.+.+.
T Consensus        86 d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~  116 (130)
T 2lst_A           86 VPKAGAWEEVGRLFGSRPRAEFLKELRQVCV  116 (130)
Confidence              56775  4 48899999999999988764

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.50  E-value=2.2e-14  Score=108.76  Aligned_cols=90  Identities=13%  Similarity=0.270  Sum_probs=69.6

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc--hhhhhhCCcCcCCEEEEEeCCEEE-eecCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY--SRLASKQEIDAFPTLKIFMHGIPT-EYYGP  135 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~  135 (363)
                      +.+.++|+|||+||++|+++.+++....+.... ...+.+..||.+++  ++++.+++|.++||+++|++|+.+ +..|.
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~   95 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGY   95 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-HHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-cccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCC
Confidence            447899999999999999998755433211100 01266778888876  579999999999999999999876 58999


Q ss_pred             CCHHHHHHHHHhhc
Q 017971          136 RKAELLVRYLKKFV  149 (363)
Q Consensus       136 ~~~~~i~~~i~~~~  149 (363)
                      ...+.+..|+.+.+
T Consensus        96 ~~~~~f~~~L~~~l  109 (116)
T 3dml_A           96 PGEDFFWPMLARLI  109 (116)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999998764

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.50  E-value=1.5e-13  Score=111.16  Aligned_cols=93  Identities=18%  Similarity=0.318  Sum_probs=76.9

Q ss_pred             HHhHcCCCeEEEEEE-CCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCccch-----------hhhhhCCcCcC
Q 017971           54 DSAISSFDYILVDFY-APWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKYS-----------RLASKQEIDAF  118 (363)
Q Consensus        54 ~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~-----------~l~~~~~i~~~  118 (363)
                      .....++++++|.|| ++||++|+++.|.+   .++++....   ++.+..+|+++.+           +++++|+|.++
T Consensus        41 ~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~---~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~  117 (154)
T 2ju5_A           41 EHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV---HLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGF  117 (154)
T ss_dssp             HHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH---HCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC---cEEEEEecCccccCCChhhHhhHHHHHHHcCCCCC
Confidence            333356789999999 99999999999999   777665433   3899999998764           89999999999


Q ss_pred             CEEEEE-eCCEEEe-ecCCC--CHHHHHHHHHhhcC
Q 017971          119 PTLKIF-MHGIPTE-YYGPR--KAELLVRYLKKFVA  150 (363)
Q Consensus       119 Pt~~~~-~~g~~~~-y~g~~--~~~~i~~~i~~~~~  150 (363)
                      ||++++ ++|+.+. + |..  +.+.+.+++.+.+.
T Consensus       118 Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          118 PELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             SEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            999999 6787654 6 888  89999999987754

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.50  E-value=1.2e-13  Score=108.82  Aligned_cols=87  Identities=15%  Similarity=0.296  Sum_probs=77.0

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------chhhhhhCCcC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------YSRLASKQEID  116 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~i~  116 (363)
                      ++++++|.||++||++|+...|.+.++++.+.    ++.+..|+++.                      +..++++|++.
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~   98 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVP   98 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC----CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCC
Confidence            56899999999999999999999999998875    49999999987                      68899999999


Q ss_pred             cCCEEEEE-eCCEEEeec---CCCCHHHHHHHHHhhc
Q 017971          117 AFPTLKIF-MHGIPTEYY---GPRKAELLVRYLKKFV  149 (363)
Q Consensus       117 ~~Pt~~~~-~~g~~~~y~---g~~~~~~i~~~i~~~~  149 (363)
                      ++|+++++ ++|+...+.   |..+.+.|.+++.+.+
T Consensus        99 ~~P~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           99 WQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             SSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC-
T ss_pred             CCCEEEEECCCCcEEEEEcCCCccCHHHHHHHHHHHh
Confidence            99999999 567665788   9999999999998764

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.50  E-value=3.5e-13  Score=105.93  Aligned_cols=88  Identities=18%  Similarity=0.285  Sum_probs=76.7

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-----------------------chhhhhhCCc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------------------YSRLASKQEI  115 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i  115 (363)
                      ++++++|.||++||++|+...|.+.++++.+.    ++.+..|+++.                       +..+++.|++
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i   99 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP----EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGV   99 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTC
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC----CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCC
Confidence            56899999999999999999999999998875    48999999843                       5778999999


Q ss_pred             CcCCEEEEEe-CCEEEeecCCCCHHHHHHHHHhhcC
Q 017971          116 DAFPTLKIFM-HGIPTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       116 ~~~Pt~~~~~-~g~~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                      .++|+++++. +|+...+.|..+.+.+.+++.+.+.
T Consensus       100 ~~~P~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A          100 TQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             CSSSEEEEECTTCCEEEEESCCCHHHHHHHHHHHC-
T ss_pred             CCCceEEEECCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            9999999995 6765578999999999999988754

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.49  E-value=2.5e-14  Score=116.99  Aligned_cols=96  Identities=20%  Similarity=0.237  Sum_probs=78.4

Q ss_pred             hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh-hhhhCCc--CcCCEEEEE-eC
Q 017971           51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR-LASKQEI--DAFPTLKIF-MH  126 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-l~~~~~i--~~~Pt~~~~-~~  126 (363)
                      ++++....++++++|.||++||++|+.+.|.|.++++.....   +.|+.||++.+++ ++..|++  .++||+++| ++
T Consensus        37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~  113 (164)
T 1sen_A           37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPS  113 (164)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTT
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCchHHHHHhcccCCcCCeEEEECCC
Confidence            667777778899999999999999999999999987665432   5677788888877 8899988  669999999 68


Q ss_pred             CEEEe-ecCC----------CCHHHHHHHHHhhc
Q 017971          127 GIPTE-YYGP----------RKAELLVRYLKKFV  149 (363)
Q Consensus       127 g~~~~-y~g~----------~~~~~i~~~i~~~~  149 (363)
                      |+.+. +.|.          .+.+.+++++.+.+
T Consensus       114 G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          114 GKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             SCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence            87663 6663          77888888887764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.49  E-value=1.2e-13  Score=97.70  Aligned_cols=74  Identities=20%  Similarity=0.311  Sum_probs=64.7

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCC-CHHHH
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPR-KAELL  141 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~-~~~~i  141 (363)
                      ..|.||++||++|+.+.|.++++++.+..   ++.+..+|   +++++++|+|.++||+++  +|+.+.. |.. +.++|
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~---~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~-G~~~~~~~l   72 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGI---DAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM-GRVASKEEI   72 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTC---CEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC-SSCCCHHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCC---ceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc-CCCCCHHHH
Confidence            35899999999999999999999987653   49999999   788999999999999998  8876655 887 89999


Q ss_pred             HHHH
Q 017971          142 VRYL  145 (363)
Q Consensus       142 ~~~i  145 (363)
                      .+|+
T Consensus        73 ~~~l   76 (77)
T 1ilo_A           73 KKIL   76 (77)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            8875

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.48  E-value=3.4e-13  Score=107.74  Aligned_cols=102  Identities=19%  Similarity=0.250  Sum_probs=85.1

Q ss_pred             EEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC----------------------
Q 017971           46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA----------------------  103 (363)
Q Consensus        46 ~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~----------------------  103 (363)
                      ..++.+.+.....++++++|.||++||++|++..|.+.++++.+.+.   +.+..|++                      
T Consensus        15 ~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   91 (148)
T 2b5x_A           15 AWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGKIKETAAEHDIT   91 (148)
T ss_dssp             EEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHHHHHHHHHTTCC
T ss_pred             ccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCCCccccCHHHHHHHHHHcCCC
Confidence            56666666655556789999999999999999999999999887653   88888885                      


Q ss_pred             -----ccchhhhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          104 -----DKYSRLASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       104 -----~~~~~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                           +.+..+++.|++.++|+++++ ++|+.+ .+.|..+.+.+.+++.+.+.
T Consensus        92 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A           92 QPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             SCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             cceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence                 445689999999999999999 677765 47898999999999988765

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.47  E-value=8.4e-13  Score=106.12  Aligned_cols=111  Identities=16%  Similarity=0.322  Sum_probs=88.7

Q ss_pred             CccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------
Q 017971           33 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------  105 (363)
Q Consensus        33 ~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------  105 (363)
                      .|+....+.++..+.+.+-       ++++++|.||++||++|+...|.+.++.+.+.+.  ++.+..|+++.       
T Consensus         6 ~p~~~l~~~~g~~~~l~~~-------~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~v~~d~~~~~~~~   76 (151)
T 2f9s_A            6 APNFVLEDTNGKRIELSDL-------KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ--GVEIVAVNVGESKIAVHN   76 (151)
T ss_dssp             CCCCEEECTTCCEEEGGGG-------TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCHHHHHH
T ss_pred             CCcceeEcCCCCEEEHHHc-------CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCCCHHHHHH
Confidence            4444444555666665542       5689999999999999999999999999988753  38888898865       


Q ss_pred             ---------------chhhhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcCCC
Q 017971          106 ---------------YSRLASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       106 ---------------~~~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~~~  152 (363)
                                     +..+++.|++.++|+++++ ++|+.+ .+.|..+.+.|.+++.+.+...
T Consensus        77 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~  140 (151)
T 2f9s_A           77 FMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGE  140 (151)
T ss_dssp             HHHHHTCCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred             HHHHcCCCceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence                           4578999999999999999 577765 4789999999999999887643

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.47  E-value=2.8e-12  Score=118.00  Aligned_cols=198  Identities=13%  Similarity=0.116  Sum_probs=145.0

Q ss_pred             CCeEEcC-hhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           43 GKVIELD-ESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        43 ~~v~~l~-~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      ..+..++ .++++++++ +++.++|.|+++||.   ...+.|.++|+.+.+   ++.|+.++   ++++|+++++. +|+
T Consensus       123 ~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~~~~~A~~~~~---~~~f~~~~---~~~~~~~~~v~-~p~  192 (350)
T 1sji_A          123 DPVEIINSKLEVQAFERIEDQIKLIGFFKSEES---EYYKAFEEAAEHFQP---YIKFFATF---DKGVAKKLSLK-MNE  192 (350)
T ss_dssp             CSEEECCSHHHHHHHHHCCSSCEEEEECSCTTS---HHHHHHHHHHHHTTT---TSEEEEEC---CHHHHHHHTCC-TTC
T ss_pred             CcceeccchHHHHHHhccCCCcEEEEEECCCCc---HHHHHHHHHHHhhcc---CcEEEEEC---CHHHHHHcCCC-CCc
Confidence            4577884 678999987 778999999999864   557899999998865   38899885   56799999999 999


Q ss_pred             EEEEeC--CEEEeecCC-CCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCC-h-------hHHHHH
Q 017971          121 LKIFMH--GIPTEYYGP-RKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-E-------SVMSNL  189 (363)
Q Consensus       121 ~~~~~~--g~~~~y~g~-~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~-~-------~~~~~~  189 (363)
                      +++|++  +.++.|.|. ++.+.|.+|+..+..|.+.+++.+. +.++.+......++ +.|... .       +.++++
T Consensus       193 i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~-~~~~~~~~~~~~~~-l~f~~~~~~~~~~~~~~~~~v  270 (350)
T 1sji_A          193 VDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPED-MFETWEDDLNGIHI-VAFAERSDPDGYEFLEILKQV  270 (350)
T ss_dssp             EEEECTTCSSCEECSSSSCCHHHHHHHHHHHCCCSEEECCTTT-HHHHHHSCSSSEEE-EEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCceecCCCCCCHHHHHHHHHHcCccchhhcChhh-HHHHhcCCCCCcEE-EEEEcCCCccHHHHHHHHHHH
Confidence            999986  356789997 9999999999999999999998754 66776543212233 334432 1       237778


Q ss_pred             HHHhhh--hhHHHHh-hhcchhhh----hhcCCC-CCCeEEEEcCCCCCccc--cc---CCCCHHHHHHHHHhhcC
Q 017971          190 ALKYKK--KAWFAVA-KDFSEDTM----VLYDFD-KVPALVALQPSYNEHNI--FY---GPFDEEFLEEFIKQNFL  252 (363)
Q Consensus       190 a~~~~~--~~~~~~~-~~~~~~~~----~~~~~~-~~p~iv~~~~~~~~~~~--~~---g~~~~~~l~~fi~~~~~  252 (363)
                      |..+++  ...|..+ ........    +.+|+. ..|.++++....+....  +.   +.++.+.|.+|+++...
T Consensus       271 A~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~  346 (350)
T 1sji_A          271 ARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLS  346 (350)
T ss_dssp             HHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCSCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHT
T ss_pred             HHHhCCCCceEEEEECchhhHHHHHHHHhhcCCCccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhc
Confidence            888876  4444433 12223344    678887 47999999764343222  32   47899999999998643

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.47  E-value=5.1e-13  Score=106.30  Aligned_cols=107  Identities=20%  Similarity=0.293  Sum_probs=85.7

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---  105 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---  105 (363)
                      .+...|+....+.++..+.+.+        ++++++|.||++||++|+...|.+.++++.+...  ++.+..|+++.   
T Consensus        11 ~g~~~p~~~l~~~~g~~~~l~~--------~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~~~~   80 (145)
T 3erw_A           11 QPAVPAVFLMKTIEGEDISIPN--------KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD--SVKLVTVNLVNSEQ   80 (145)
T ss_dssp             -CCSCCEEEEECTTSCEEEESC--------TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS--SEEEEEEECGGGSS
T ss_pred             CCCcCCCceeecCCCCEEeHHH--------CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC--CEEEEEEEccCCcC
Confidence            3445555555555555555543        4589999999999999999999999999887633  49999999864   


Q ss_pred             ----------------------chhhhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHH
Q 017971          106 ----------------------YSRLASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYL  145 (363)
Q Consensus       106 ----------------------~~~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i  145 (363)
                                            +..+++.|++.++|+++++ ++|+.+ .+.|..+.+.+.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A           81 NQQVVEDFIKANKLTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence                                  6689999999999999999 677765 489999999999886

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.45  E-value=5.4e-13  Score=108.78  Aligned_cols=112  Identities=18%  Similarity=0.287  Sum_probs=89.4

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhh
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL  109 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l  109 (363)
                      +...|+....+.++..+.+.+       .++++++|.||++||++|+...|.+.++.+.+.+.  ++.+..|+++.+++.
T Consensus        11 g~~~p~~~l~~~~g~~~~l~~-------~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~v~~v~v~~d~~~~~   81 (165)
T 3or5_A           11 PTPAPSFSGVTVDGKPFSSAS-------LKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR--GFTFVGIAVNEQLPN   81 (165)
T ss_dssp             CCBCCCCEEECTTSCEEEGGG-------GTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT--TEEEEEEECSCCHHH
T ss_pred             CCCCCCceeeCCCCCEechhH-------cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCCCHHH
Confidence            344455444444555544443       25689999999999999999999999999988754  499999999988777


Q ss_pred             hhhC---------------------------CcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          110 ASKQ---------------------------EIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       110 ~~~~---------------------------~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      ++++                           ++.++|+++++ ++|+.+ .+.|..+.+.+.+++.+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  151 (165)
T 3or5_A           82 VKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALG  151 (165)
T ss_dssp             HHHHHHHHTCCSCEEECCHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCceEecCHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence            7777                           89999999999 577765 47899999999999988875

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=99.45  E-value=2.4e-13  Score=108.63  Aligned_cols=115  Identities=17%  Similarity=0.235  Sum_probs=91.6

Q ss_pred             HHHhhcCCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEec--cCchhHHhhcCC
Q 017971          246 FIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGI--KQFADFADTFEA  322 (363)
Q Consensus       246 fi~~~~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~--~~~~~~~~~~gi  322 (363)
                      -++++++|++.++|.+++..++.++.+.+++++...++...+.+.+.++++|+++++ +.|+++|.  .++...++.||+
T Consensus         7 ~~~~~~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl   86 (147)
T 3bj5_A            7 HMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGL   86 (147)
T ss_dssp             --------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTC
T ss_pred             chhhccCCeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCC
Confidence            356789999999999999999999999988877654455578899999999999998 99999999  677789999999


Q ss_pred             CCCCCCCeEEEEeC--CCCeeEE-EEEEeehhhhhHhhhhhc
Q 017971          323 NKKSKLPKMVVWDG--NENYLTV-SINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       323 ~~~~~~P~~vi~~~--~~~y~~~-~~~~~~~~~~~~~~~~~~  361 (363)
                       +..+.|+++|++.  ++++|.+ .++++.+.|..||..||.
T Consensus        87 -~~~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~  127 (147)
T 3bj5_A           87 -KKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLE  127 (147)
T ss_dssp             -CGGGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHT
T ss_pred             -CcccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHc
Confidence             5568999999986  4544554 488888999999999985

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.44  E-value=3.2e-12  Score=118.31  Aligned_cols=200  Identities=12%  Similarity=0.111  Sum_probs=145.7

Q ss_pred             CCeEEcC-hhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           43 GKVIELD-ESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        43 ~~v~~l~-~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      ..+..++ .++++++++ +++.++|.|+++||.   ...+.|.++|+.+.+.   +.|+.++   +.+++++|++.. |+
T Consensus       125 ~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~~---~~F~~~~---~~~~~~~~~v~~-p~  194 (367)
T 3us3_A          125 DPVELIEGERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPY---IPFFATF---DSKVAKKLTLKL-NE  194 (367)
T ss_dssp             CSEEECCSHHHHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHTTT---SCEEEEC---CHHHHHHHTCCT-TC
T ss_pred             CCcEEcCCHHHHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhcCC---cEEEEEC---CHHHHHHcCCCC-Ce
Confidence            4577885 588999997 678999999999865   6678999999988654   8899886   467999999996 99


Q ss_pred             EEEEeC--CEEEeecCC-CCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCCh--------hHHHHH
Q 017971          121 LKIFMH--GIPTEYYGP-RKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNL  189 (363)
Q Consensus       121 ~~~~~~--g~~~~y~g~-~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~  189 (363)
                      +++|++  +.++.|.|. ++.+.|.+|+..+..|.+.+++.+. +.+...+.... +.++.|....        +.++.+
T Consensus       195 i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~-~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~l~~v  272 (367)
T 3us3_A          195 IDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPES-MYETWEDDMDG-IHIVAFAEEADPDGYEFLEILKSV  272 (367)
T ss_dssp             EEEECTTCSSCEECSSSSCCHHHHHHHHHHTCSCSEEECCGGG-HHHHHHSCBTT-EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCccceeecChhh-HHHHHhhccCC-cEEEEEEcCCChhHHHHHHHHHHH
Confidence            999987  467789995 9999999999999999999998754 55665543221 2444454321        237778


Q ss_pred             HHHhhh--hhHHHHhh-hcchhh----hhhcCCC-CCCeEEEEcCCCCC--cccccC---CCCHHHHHHHHHhhcCCC
Q 017971          190 ALKYKK--KAWFAVAK-DFSEDT----MVLYDFD-KVPALVALQPSYNE--HNIFYG---PFDEEFLEEFIKQNFLPL  254 (363)
Q Consensus       190 a~~~~~--~~~~~~~~-~~~~~~----~~~~~~~-~~p~iv~~~~~~~~--~~~~~g---~~~~~~l~~fi~~~~~p~  254 (363)
                      |+.+++  ...|..+. ......    ...+|+. +.|.++++....+.  ...+.+   .++.+.|.+|+++.....
T Consensus       273 A~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~Gk  350 (367)
T 3us3_A          273 AQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGE  350 (367)
T ss_dssp             HHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHTS
T ss_pred             HHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHHHcCC
Confidence            888887  45554331 111211    3458887 78999999865442  233443   689999999999874433

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.43  E-value=7.2e-12  Score=109.77  Aligned_cols=192  Identities=16%  Similarity=0.218  Sum_probs=143.3

Q ss_pred             CCeEEc-ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l-~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      ..+..| +.+.++++++.++.++|.|+++|   |....+.|.++|+.+++.   +.|+.+.   +.++++++++.+ |++
T Consensus         6 P~v~~l~s~~~~~~~l~~~~v~vvgff~~~---~~~~~~~f~~~A~~lr~~---~~F~~~~---~~~v~~~~~~~~-p~i   75 (252)
T 2h8l_A            6 PASVPLRTEEEFKKFISDKDASIVGFFDDS---FSEAHSEFLKAASNLRDN---YRFAHTN---VESLVNEYDDNG-EGI   75 (252)
T ss_dssp             CCEEECCSHHHHHHHHTSSSCEEEEEESCT---TSHHHHHHHHHHHHTTTT---SCEEEEC---CHHHHHHHCSSS-EEE
T ss_pred             CCceeecCHHHHHHHhhcCCeEEEEEECCC---CChHHHHHHHHHHhcccC---cEEEEEC---hHHHHHHhCCCC-CcE
Confidence            347888 46778888988899999999998   457789999999988654   8888884   577999999997 999


Q ss_pred             EEEeC--------CEEEee-cCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeec--CC---h----
Q 017971          122 KIFMH--------GIPTEY-YGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFG--LD---E----  183 (363)
Q Consensus       122 ~~~~~--------g~~~~y-~g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~--~~---~----  183 (363)
                      ++|++        .....| .|..+.+.|.+|+..+.-|.+.+++.+. ...+ ...    ++++.|.  ..   .    
T Consensus        76 ~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~~n-~~~~-~~~----~~~v~~~~~~~~~~~~~~~  149 (252)
T 2h8l_A           76 ILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDN-KDLI-QGK----DLLIAYYDVDYEKNAKGSN  149 (252)
T ss_dssp             EEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSCSSCEECTTT-HHHH-SSS----SEEEEEECCBTTTBHHHHH
T ss_pred             EEEcchhhcccccccccccCCCCcCHHHHHHHHHhcccCCeeeccccc-Hhhh-cCC----CeEEEEeecchhhcchhHH
Confidence            99985        346679 9999999999999999999999998865 6665 222    2344433  11   1    


Q ss_pred             ---hHHHHHHHHhhhh---hHHHHh-hhcchhhhhhcCC----CCCCeEEEEcCCCCCcccccCCCCHHH--HHHHHHhh
Q 017971          184 ---SVMSNLALKYKKK---AWFAVA-KDFSEDTMVLYDF----DKVPALVALQPSYNEHNIFYGPFDEEF--LEEFIKQN  250 (363)
Q Consensus       184 ---~~~~~~a~~~~~~---~~~~~~-~~~~~~~~~~~~~----~~~p~iv~~~~~~~~~~~~~g~~~~~~--l~~fi~~~  250 (363)
                         ..++++|+.+++.   ..|..+ ......+...+|+    ...|.++++.. .+....+.+.++.+.  |.+|+++.
T Consensus       150 ~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~-~~~ky~~~~~~t~~~~~i~~F~~~~  228 (252)
T 2h8l_A          150 YWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTA-KGEKFVMQEEFSRDGKALERFLQDY  228 (252)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECT-TSCEEECCSCCCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeC-cCcEecCCcccCcchHHHHHHHHHH
Confidence               2356688888876   555443 2223446788999    35799998864 344444667888888  99999986


Q ss_pred             c
Q 017971          251 F  251 (363)
Q Consensus       251 ~  251 (363)
                      .
T Consensus       229 ~  229 (252)
T 2h8l_A          229 F  229 (252)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.42  E-value=6e-13  Score=108.48  Aligned_cols=105  Identities=16%  Similarity=0.202  Sum_probs=85.1

Q ss_pred             CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEE-----------------------
Q 017971           44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK-----------------------  100 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~-----------------------  100 (363)
                      .+.+++.+.+.....++++++|.||++||++|+...|.+.++++.++..+  +.+..                       
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~   99 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKKDGEFQKWYAGLN   99 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--cEEEEEEcCCCccccCHHHHHHHHHhCC
Confidence            67777777776655567899999999999999999999999998765432  33333                       


Q ss_pred             -----EeCccchhhhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          101 -----VDADKYSRLASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       101 -----vd~~~~~~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                           ++++.+.+++++|+|.++|+++++ ++|+.+ .+.|..+.+.+.+++.+...
T Consensus       100 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          100 YPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             CTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             CCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                 445567789999999999999999 577765 47899999999999988765

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.42  E-value=1.5e-12  Score=104.58  Aligned_cols=113  Identities=21%  Similarity=0.350  Sum_probs=88.8

Q ss_pred             CCCCc-cccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch-
Q 017971           30 GLSSE-EETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-  107 (363)
Q Consensus        30 ~~~~~-~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-  107 (363)
                      |...| +....+.++..+.+.+.       .+++++|.||++||++|+...|.+.++.+.+.+.  ++.+..|+++.+. 
T Consensus         6 G~~~p~~f~l~~~~g~~~~l~~~-------~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~   76 (152)
T 2lja_A            6 GNPSAASFSYPDINGKTVSLADL-------KGKYIYIDVWATWCGPCRGELPALKELEEKYAGK--DIHFVSLSCDKNKK   76 (152)
T ss_dssp             TCCCSSSCEEEETTTEEEESTTT-------TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS--SEEEEEEECCSCHH
T ss_pred             CCCCCcccEeecCCCCEeeHHHc-------CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC--CeEEEEEEccCcHH
Confidence            33445 44444455555555432       5689999999999999999999999999887643  4999999998765 


Q ss_pred             ----------------------hhhhhCCcCcCCEEEEEe-CCEEEe-ecCCCCHHHHHHHHHhhcCC
Q 017971          108 ----------------------RLASKQEIDAFPTLKIFM-HGIPTE-YYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       108 ----------------------~l~~~~~i~~~Pt~~~~~-~g~~~~-y~g~~~~~~i~~~i~~~~~~  151 (363)
                                            .+++.|++.++|+++++. +|+.+. +.|..+.+.|.+++.+....
T Consensus        77 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~  144 (152)
T 2lja_A           77 AWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGL  144 (152)
T ss_dssp             HHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhcc
Confidence                                  789999999999999997 677654 67888889999999888653

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.40  E-value=5e-12  Score=101.58  Aligned_cols=112  Identities=18%  Similarity=0.316  Sum_probs=87.6

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch--
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS--  107 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~--  107 (363)
                      |...|+....+ ++..+.+.+.       ++++++|.||++||++|+...|.+.++++.+.+.+  +.+..|+++.++  
T Consensus         6 G~~~P~f~l~~-~g~~~~l~~~-------~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~   75 (152)
T 3gl3_A            6 GDKAPDFALPG-KTGVVKLSDK-------TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGD   75 (152)
T ss_dssp             TSBCCCCEEEB-SSSEEEGGGG-------TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSHHH
T ss_pred             CCcCCceEeeC-CCCeEeHHHh-------CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEECCCCHHH
Confidence            44555555555 5666666543       56899999999999999999999999999987653  888889888655  


Q ss_pred             --------------------hhhhhCCcCcCCEEEEE-eCCEEE-eecCCC--CHHHHHHHHHhhcCC
Q 017971          108 --------------------RLASKQEIDAFPTLKIF-MHGIPT-EYYGPR--KAELLVRYLKKFVAP  151 (363)
Q Consensus       108 --------------------~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~--~~~~i~~~i~~~~~~  151 (363)
                                          .+++.|++.++|+++++ ++|+.+ .+.|..  +.+.|.+++.+....
T Consensus        76 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~  143 (152)
T 3gl3_A           76 AMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGG  143 (152)
T ss_dssp             HHHHHHHSCCCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC-
T ss_pred             HHHHHHHcCCCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHcc
Confidence                                68889999999999998 577665 467754  558999999888763

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.40  E-value=1.9e-12  Score=103.39  Aligned_cols=113  Identities=19%  Similarity=0.261  Sum_probs=86.9

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHh-hcCCCCeEEEEEeCcc--
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL-AKLKEPIVIAKVDADK--  105 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~-~~~~~~v~~~~vd~~~--  105 (363)
                      .|...|+....+.++..+.+++.++     ++++++|.||++||++|+...|.+.++++.+ .+.  ++.+..|+++.  
T Consensus         7 ~g~~~p~~~l~~~~g~~~~l~~~~~-----~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~~v~v~~d~~~   79 (148)
T 3fkf_A            7 VGKSAPYFSLPNEKGEKLSRSAERF-----RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNK--NFAMLGISLDIDR   79 (148)
T ss_dssp             TTSBCCCCCEEBTTSCEECTTSTTT-----TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCT--TEEEEEEECCSCH
T ss_pred             CCCcCCCeEeeCCCCCEEecccccc-----CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCC--CeEEEEEECCCCH
Confidence            3455566666666777777763333     5689999999999999999999999999987 443  48888888876  


Q ss_pred             -----------------------chhhhhhCCcCcCCEEEEE-eCCEEEeecCCCCHHHHHHHHHhhcC
Q 017971          106 -----------------------YSRLASKQEIDAFPTLKIF-MHGIPTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       106 -----------------------~~~l~~~~~i~~~Pt~~~~-~~g~~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                                             +..+++.|++.++|+++++ ++|+.+.. .. +.+.+.+++.+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~-~~-~~~~l~~~l~~ll~  146 (148)
T 3fkf_A           80 EAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILAR-DI-QGEALTGKLKELLK  146 (148)
T ss_dssp             HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEE-SC-CHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEe-cC-CHHHHHHHHHHHHc
Confidence                                   4589999999999999999 56665432 22 88888888887653

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.40  E-value=2.9e-12  Score=103.08  Aligned_cols=112  Identities=15%  Similarity=0.196  Sum_probs=86.9

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-------
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-------  102 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-------  102 (363)
                      |...|+....+.++..+.+.+.       ++++++|.||++||++|+...|.+.++++.+.+.  ++.+..|+       
T Consensus         5 G~~~p~~~l~~~~g~~~~l~~~-------~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~~~~~~~   75 (153)
T 2l5o_A            5 SKTAPAFSLPDLHGKTVSNADL-------QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK--NFQVLAVAQPIDPIE   75 (153)
T ss_dssp             CTTCCSCEEECTTSCEEEHHHH-------TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT--TEEEEEEECTTSCHH
T ss_pred             CCCCCCcEeecCCCCCccHHHh-------CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CeEEEEEecCCCCHH
Confidence            4445555555555555554321       5689999999999999999999999999988754  37676555       


Q ss_pred             ----------------CccchhhhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          103 ----------------ADKYSRLASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       103 ----------------~~~~~~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                                      ++.+..+++.|++.++|+++++ ++|+.+ .|.|..+.+.|.+++.+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  141 (153)
T 2l5o_A           76 SVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWR  141 (153)
T ss_dssp             HHHHHHHHTTCCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                            4456789999999999999999 567654 48999999999999988764

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.39  E-value=3.6e-12  Score=101.22  Aligned_cols=110  Identities=17%  Similarity=0.316  Sum_probs=83.9

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHH---HHHHhhcCCCCeEEEEEeCcc
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDE---AAPILAKLKEPIVIAKVDADK  105 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~---~a~~~~~~~~~v~~~~vd~~~  105 (363)
                      .|..+|+....+.++..+.+.+-       ++++++|.||++||++|+...|.+.+   +.+.+++.  ++.+..|+++.
T Consensus         3 ~G~~~p~f~l~~~~g~~~~l~~~-------~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~--~~~~v~v~~d~   73 (142)
T 3ewl_A            3 AGMKAADFTYVTVHGDNSRMSRL-------KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG--TLRVLAIYPDE   73 (142)
T ss_dssp             TTSBCCCCEEECTTCCEEEGGGC-------CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT--SEEEEEEECSS
T ss_pred             CCCcCCCCEEECCCCCEEEhhhc-------CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC--CeEEEEEEecC
Confidence            34556666666667766666543       56899999999999999999999998   88887654  48999999886


Q ss_pred             chhh------------------------hhhCCcCcCCEEEEEe-CCEEEeecCCCCHHHHHHHHHhhc
Q 017971          106 YSRL------------------------ASKQEIDAFPTLKIFM-HGIPTEYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       106 ~~~l------------------------~~~~~i~~~Pt~~~~~-~g~~~~y~g~~~~~~i~~~i~~~~  149 (363)
                      +++.                        ++.|+|.++|+++++. +|+.+ + +..+.++|.+++.+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~-~-~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A           74 NREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVI-L-KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEE-E-CSCCHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHcCCCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEE-e-cCCCHHHHHHHHHHHc
Confidence            6543                        4489999999999995 56543 3 5678899999887654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.39  E-value=4.7e-13  Score=107.23  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=67.5

Q ss_pred             hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEe-CCEE
Q 017971           51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM-HGIP  129 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~-~g~~  129 (363)
                      +.++.+..++++++|.|||+||++|+.+.|.+.+..+..+..+.++....+| .+..+++.++++.++||+++|. +|+.
T Consensus        35 ~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD-~e~~~~~~~~~v~~~PT~~f~~~~G~~  113 (151)
T 3ph9_A           35 EGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLM-HETTDKNLSPDGQYVPRIMFVDPSLTV  113 (151)
T ss_dssp             HHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEES-SCCSCGGGCTTCCCSSEEEEECTTSCB
T ss_pred             HHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEec-CCchhhHhhcCCCCCCEEEEECCCCCE
Confidence            3455556778999999999999999999999987532211101124444444 3455678899999999999998 7876


Q ss_pred             Ee-ecCC----------CCHHHHHHHHHhhc
Q 017971          130 TE-YYGP----------RKAELLVRYLKKFV  149 (363)
Q Consensus       130 ~~-y~g~----------~~~~~i~~~i~~~~  149 (363)
                      +. ..|.          .+.+.+++.+++.+
T Consensus       114 v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A          114 RADIAGRYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             CTTCCCSCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             EEEEeCCcCCcccccchhhHHHHHHHHHHHH
Confidence            53 5565          33456666665543

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.38  E-value=3.2e-12  Score=102.97  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=86.7

Q ss_pred             CCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC--------
Q 017971           32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA--------  103 (363)
Q Consensus        32 ~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~--------  103 (363)
                      ..|+....+.++..+.+.+-       + ++++|.||++||++|+...|.+.++++.+     ++.+..|++        
T Consensus        10 ~~p~f~l~~~~g~~~~l~~~-------~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~-----~v~~v~v~~d~~~~~~~   76 (154)
T 3ia1_A           10 PLPDFLLLDPKGQPVTPATV-------S-KPAVIVFWASWCTVCKAEFPGLHRVAEET-----GVPFYVISREPRDTREV   76 (154)
T ss_dssp             ECCCCCEECTTSCEECTTTS-------C-SSEEEEEECTTCHHHHHHHHHHHHHHHHH-----CCCEEEEECCTTCCHHH
T ss_pred             cCCceEEECCCCCEechHHc-------C-CeEEEEEEcccChhHHHHHHHHHHHHHHc-----CCeEEEEeCCCcccHHH
Confidence            34444444455555554432       4 89999999999999999999999999987     278888888        


Q ss_pred             -------------------ccchhhhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcCCC
Q 017971          104 -------------------DKYSRLASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       104 -------------------~~~~~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~~~  152 (363)
                                         +.+..+++.|++.++|+++++ ++|+.+ .+.|..+.+.|.+++.++....
T Consensus        77 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A           77 VLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADL  146 (154)
T ss_dssp             HHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHcCCCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence                               467889999999999998888 578765 4889999999999999987654

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.38  E-value=3.7e-12  Score=102.37  Aligned_cols=91  Identities=14%  Similarity=0.233  Sum_probs=76.9

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc------------------------chhhhhhCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK------------------------YSRLASKQE  114 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~------------------------~~~l~~~~~  114 (363)
                      ++++++|.||++||++|+...|.+.++++.+++  .++.+..|+++.                        ...+++.|+
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~--~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK--GSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYG  100 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc--CCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhC
Confidence            568999999999999999999999999988743  359999999862                        355778899


Q ss_pred             --cCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcCC
Q 017971          115 --IDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       115 --i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~~  151 (363)
                        +.++|+++++ ++|+.+ .+.|..+.+.+.+++.+....
T Consensus       101 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~  141 (151)
T 3raz_A          101 NTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSK  141 (151)
T ss_dssp             CCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC
T ss_pred             CccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence              9999999999 467654 589999999999999887653

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.38  E-value=1.5e-12  Score=103.92  Aligned_cols=110  Identities=16%  Similarity=0.221  Sum_probs=84.2

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh-
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR-  108 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-  108 (363)
                      |...|+....+.++..+.+.+.       ++++++|.||++||++|+...|.+.++.+.+.+.  ++.+..|+++.+++ 
T Consensus         8 G~~~p~~~l~~~~g~~~~l~~~-------~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~~   78 (148)
T 3hcz_A            8 GKKAPNLYMTDTTGTYRYLYDV-------QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK--GIQVYAANIERKDEE   78 (148)
T ss_dssp             TSBCCCCCCBCTTSCBCCGGGC-------CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG--TEEEEEEECCSSSHH
T ss_pred             CCcCCceEEecCCCCEEEhHHc-------CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CEEEEEEEecCCHHH
Confidence            3444554444444444443322       5689999999999999999999999999998764  49999999998777 


Q ss_pred             ------------------------hhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhh
Q 017971          109 ------------------------LASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       109 ------------------------l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                                              +++.|++.++|+++++ ++|+.+ .+.|..+.+.+++.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~  144 (148)
T 3hcz_A           79 WLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKS  144 (148)
T ss_dssp             HHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHH
Confidence                                    9999999999999999 567655 467777777777666544

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.38  E-value=5.1e-12  Score=99.24  Aligned_cols=105  Identities=22%  Similarity=0.388  Sum_probs=82.0

Q ss_pred             ccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC----------
Q 017971           34 EEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA----------  103 (363)
Q Consensus        34 ~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~----------  103 (363)
                      |+....+.++..+.+.+.       ++++++|.||++||++|+...|.+.++++.+.   .++.+..+++          
T Consensus         3 p~f~l~~~~g~~~~l~~~-------~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~v~i~~~~~~~~~~~~   72 (138)
T 4evm_A            3 ADFELMGVDGKTYRLSDY-------KGKKVYLKFWASWCSICLASLPDTDEIAKEAG---DDYVVLTVVSPGHKGEQSEA   72 (138)
T ss_dssp             CCCEEEBTTSCEEEGGGG-------TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT---TTEEEEEEECTTSTTCCCHH
T ss_pred             CcceeECCCCCEEEHHHh-------CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC---CCcEEEEEEcCCCCchhhHH
Confidence            333444455666665542       56899999999999999999999999998743   3488888854          


Q ss_pred             ------------------ccchhhhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhh
Q 017971          104 ------------------DKYSRLASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       104 ------------------~~~~~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                                        +.+..+++.|++.++|+++++ ++|+.+ .+.|..+.+.+.+++.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           73 DFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HHHHHHTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             HHHHHHhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence                              335679999999999999999 577765 588999999999988763

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.38  E-value=4.7e-12  Score=101.91  Aligned_cols=108  Identities=21%  Similarity=0.343  Sum_probs=81.9

Q ss_pred             CCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc------
Q 017971           32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK------  105 (363)
Q Consensus        32 ~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~------  105 (363)
                      ..|+....+.++..+.+.+-       ++++++|.||++||++|+...|.+.++.+.+.+.  ++.+..|+++.      
T Consensus         8 ~~p~f~l~~~~G~~~~l~~~-------~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~   78 (152)
T 2lrn_A            8 VAPAITGIDLKGNSVSLNDF-------KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK--GFTIYGVSTDRREEDWK   78 (152)
T ss_dssp             ECCCCEEECSSSCEEESGGG-------TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT--TEEEEEEECCSCHHHHH
T ss_pred             cCCCceeEcCCCCEEeHHHc-------CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC--CeEEEEEEccCCHHHHH
Confidence            34454455556666666542       5689999999999999999999999999988653  48999999987      


Q ss_pred             -------------------chhhhhhCCcCcCCEEEEE-eCCEEEeecCCCCHHHHHHHHHhhcC
Q 017971          106 -------------------YSRLASKQEIDAFPTLKIF-MHGIPTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       106 -------------------~~~l~~~~~i~~~Pt~~~~-~~g~~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                                         +..+++.|+|.++|+++++ ++|+.+...  .+.+.+.+++.+...
T Consensus        79 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~--~~~~~l~~~l~~l~~  141 (152)
T 2lrn_A           79 KAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE--LRGDDLYNTVEKFVN  141 (152)
T ss_dssp             HHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEEC--CCTTHHHHHHHHHHT
T ss_pred             HHHHHhCCCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEee--CCHHHHHHHHHHHHh
Confidence                               5789999999999999999 567765421  234567666666543

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.37  E-value=1.9e-12  Score=105.66  Aligned_cols=88  Identities=16%  Similarity=0.131  Sum_probs=71.1

Q ss_pred             EEcChhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCC---cCcCCEE
Q 017971           46 IELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE---IDAFPTL  121 (363)
Q Consensus        46 ~~l~~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~---i~~~Pt~  121 (363)
                      +.++++.++.+-. ++++++|.|||+||++|+...|.+.++++.+.    ++.+..||.+++++++++|.   +.++||+
T Consensus        39 ~~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~----~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~  114 (167)
T 1z6n_A           39 NGLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRAEDDLRQRLALERIAIPLV  114 (167)
T ss_dssp             HCCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHHHHHTTTTTTCSSCCSSEE
T ss_pred             cCCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CcEEEEEECCCCHHHHHHHHHcCCCCcCeE
Confidence            4456666655432 45789999999999999999999999997643    49999999999999999997   9999999


Q ss_pred             EEEeCC-EEEeecCCCC
Q 017971          122 KIFMHG-IPTEYYGPRK  137 (363)
Q Consensus       122 ~~~~~g-~~~~y~g~~~  137 (363)
                      ++|.+| +.+...|.+.
T Consensus       115 i~~~~~G~~~~~~g~~p  131 (167)
T 1z6n_A          115 LVLDEEFNLLGRFVERP  131 (167)
T ss_dssp             EEECTTCCEEEEEESSC
T ss_pred             EEECCCCCEEEEEcCCC
Confidence            999875 6555446554

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.36  E-value=1.1e-12  Score=115.90  Aligned_cols=85  Identities=20%  Similarity=0.314  Sum_probs=68.0

Q ss_pred             hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc------cchhhhhhCCcCcCCEEEE
Q 017971           50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD------KYSRLASKQEIDAFPTLKI  123 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~------~~~~l~~~~~i~~~Pt~~~  123 (363)
                      ...+.+.+++.+  +|.||||||+||+++.|.|++++++++         .+||+      +++++|++++|+++||+++
T Consensus       189 ~~~la~~l~~~~--vV~F~A~WC~~Ck~l~p~le~lA~~l~---------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i  257 (291)
T 3kp9_A          189 AVGLAAHLRQIG--GTMYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPNGPGTPQAQECTEAGITSYPTWII  257 (291)
T ss_dssp             HHHHHHHHHHTT--CEEEECTTCHHHHHHHHHHGGGGGGSC---------EEESCSSCSSSCCCHHHHTTTCCSTTEEEE
T ss_pred             HHHHHHHhCCCC--EEEEECCCCHHHHHHHHHHHHHHHHcC---------EEEEeecCchhhHHHHHHHcCCcccCeEEE
Confidence            455666665544  699999999999999999999986541         45665      3789999999999999655


Q ss_pred             EeCCEEEeecCCCCHHHHHHHHHhhc
Q 017971          124 FMHGIPTEYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       124 ~~~g~~~~y~g~~~~~~i~~~i~~~~  149 (363)
                        +|+.  |.|.++.+++.+|+....
T Consensus       258 --~G~~--~~G~~~~~~L~~~l~~~~  279 (291)
T 3kp9_A          258 --NGRT--YTGVRSLEALAVASGYPL  279 (291)
T ss_dssp             --TTEE--EESCCCHHHHHHHTCCCC
T ss_pred             --CCEE--ecCCCCHHHHHHHHCCCC
Confidence              8864  999999999999986443

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.36  E-value=1.4e-12  Score=106.62  Aligned_cols=82  Identities=18%  Similarity=0.276  Sum_probs=70.3

Q ss_pred             EEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHH-H--HHHHHHhhcCCCCeEEEEEeCccchhhhhhC--------C
Q 017971           46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQ-L--DEAAPILAKLKEPIVIAKVDADKYSRLASKQ--------E  114 (363)
Q Consensus        46 ~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~-~--~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~  114 (363)
                      ...+++.|+.+..+++++||.||++||++|+.+.|+ |  .++++.+++.   +.+++||.++++++.+.|        +
T Consensus        25 ~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~---fv~ikVD~de~~~l~~~y~~~~q~~~g  101 (173)
T 3ira_A           25 YPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA---FVSIKVDREERPDIDNIYMTVCQIILG  101 (173)
T ss_dssp             BCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH---CEEEEEETTTCHHHHHHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc---CceeeeCCcccCcHHHHHHHHHHHHcC
Confidence            345678899999899999999999999999999994 3  4667766553   899999999999999998        9


Q ss_pred             cCcCCEEEEEe-CCEEE
Q 017971          115 IDAFPTLKIFM-HGIPT  130 (363)
Q Consensus       115 i~~~Pt~~~~~-~g~~~  130 (363)
                      +.++|+++++. +|+++
T Consensus       102 v~g~Pt~v~l~~dG~~v  118 (173)
T 3ira_A          102 RGGWPLNIIMTPGKKPF  118 (173)
T ss_dssp             CCCSSEEEEECTTSCEE
T ss_pred             CCCCcceeeECCCCCce
Confidence            99999999997 67765

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.35  E-value=6.7e-12  Score=99.73  Aligned_cols=107  Identities=17%  Similarity=0.164  Sum_probs=79.3

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHH---HHHHhhcCCCCeEEEEEeCccc
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDE---AAPILAKLKEPIVIAKVDADKY  106 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~---~a~~~~~~~~~v~~~~vd~~~~  106 (363)
                      |..+|+....+.++....+.+-       .+++++|.||++||++|+...|.+.+   +.+.+++.  ++.+..|+.+.+
T Consensus         8 G~~ap~f~l~~~~g~~~~l~~~-------~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~--~~~vi~i~~d~~   78 (142)
T 3eur_A            8 GTKALNFTYTLDSGVKGTLYQF-------PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK--KLKVLSIYPDEE   78 (142)
T ss_dssp             TSBCCCCEEEETTSCEEETTTC-------CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT--SEEEEEEECSSC
T ss_pred             CCccCCcEEEcCCCCEeeHHHc-------CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC--CeEEEEEEcCCC
Confidence            4455655555556666666442       45899999999999999999999999   89888653  488888998766


Q ss_pred             hh------------------------hhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHH
Q 017971          107 SR------------------------LASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLK  146 (363)
Q Consensus       107 ~~------------------------l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~  146 (363)
                      .+                        +++.|++.++|+++++..+..+.+.+ .+.++|.+|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-~~~~~l~~~l~  141 (142)
T 3eur_A           79 LDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD-ATLQKVEQYLA  141 (142)
T ss_dssp             HHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEE-ECHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecC-CCHHHHHHHHh
Confidence            33                        47889999999999996433333332 24678887775

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.34  E-value=2.2e-12  Score=96.41  Aligned_cols=77  Identities=14%  Similarity=0.105  Sum_probs=68.9

Q ss_pred             eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHH
Q 017971           62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELL  141 (363)
Q Consensus        62 ~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i  141 (363)
                      ..++.||++||+.|+++.|.+++++++.   +  +.+..+|.++++++.++|++. +|++++|.+|+.+ ..|..+.+.|
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~---~--i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v-~~g~~~~~~L  102 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKS---W--FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL-CHYFLDSDVI  102 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHS---C--CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE-ECSSCCCHHH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhc---C--CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE-EecCCCHHHH
Confidence            6699999999999999999999998764   2  889999999999999999997 9999999999876 4588888888


Q ss_pred             HHHH
Q 017971          142 VRYL  145 (363)
Q Consensus       142 ~~~i  145 (363)
                      .+|+
T Consensus       103 ~~~L  106 (107)
T 2fgx_A          103 GAYL  106 (107)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8886

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.33  E-value=1.7e-11  Score=99.27  Aligned_cols=91  Identities=25%  Similarity=0.457  Sum_probs=74.3

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------------------chhhhhhCCcCcCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------------------YSRLASKQEIDAFP  119 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------------------~~~l~~~~~i~~~P  119 (363)
                      ++++++|.||++||++|+...|.+.++++.+.+.  ++.+..|+++.                   +.++++.|++.++|
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  117 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG--DLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLP  117 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT--SEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC--CeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcc
Confidence            5689999999999999999999999999988643  49999999987                   68899999999999


Q ss_pred             EEEEE-eCCEEE-eecCC--CCHHHHHHHHHhhcCC
Q 017971          120 TLKIF-MHGIPT-EYYGP--RKAELLVRYLKKFVAP  151 (363)
Q Consensus       120 t~~~~-~~g~~~-~y~g~--~~~~~i~~~i~~~~~~  151 (363)
                      +++++ ++|+.. .+.|.  .+.+++++.+.+..++
T Consensus       118 ~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~  153 (158)
T 3hdc_A          118 DTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGH  153 (158)
T ss_dssp             EEEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC--
T ss_pred             eEEEEcCCCCEEEEEeCCCccchHHHHHHHHhhccc
Confidence            98888 567655 47775  4567777777766554

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.33  E-value=1.4e-11  Score=99.79  Aligned_cols=90  Identities=13%  Similarity=0.238  Sum_probs=75.8

Q ss_pred             CCCeEEEEEECCCChhhhh-HHHHHHHHHHHhhcCCCCeEEEEEeC----------------------------ccchh-
Q 017971           59 SFDYILVDFYAPWCGHCKR-LAPQLDEAAPILAKLKEPIVIAKVDA----------------------------DKYSR-  108 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~-~~~~~~~~a~~~~~~~~~v~~~~vd~----------------------------~~~~~-  108 (363)
                      ++++++|.||++||++|+. ..|.+.++.+.+.+.  ++.+..|++                            +.... 
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  106 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES--QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREG  106 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT--TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTT
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC--CcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCcccc
Confidence            5689999999999999999 599999999988654  488888886                            23334 


Q ss_pred             -----hhhhCCcCcCCEEEEEe-CCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          109 -----LASKQEIDAFPTLKIFM-HGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       109 -----l~~~~~i~~~Pt~~~~~-~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                           +++.|++.++|+++++. +|+.+ .+.|..+.+.+.+++.+.+.
T Consensus       107 ~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  155 (160)
T 3lor_A          107 QRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS  155 (160)
T ss_dssp             CSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             chhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence                 89999999999999995 67655 47899999999999988765

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.33  E-value=3.5e-12  Score=104.40  Aligned_cols=107  Identities=15%  Similarity=0.213  Sum_probs=79.7

Q ss_pred             cccCCCCCeEEc--ChhhHHHh-HcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-----------
Q 017971           37 TKFKIDGKVIEL--DESNFDSA-ISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-----------  102 (363)
Q Consensus        37 ~~~~~~~~v~~l--~~~~f~~~-l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-----------  102 (363)
                      +...++-.+.++  +.+.+... +.++++++|.||++||++|+...|.+.++++.      ++.+..|+           
T Consensus        25 G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~------~v~vv~v~~~~~~~~~~~~   98 (168)
T 2b1k_A           25 GKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISW   98 (168)
T ss_dssp             TSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCCEEEEEESCCHHHHHHH
T ss_pred             CCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC------CCEEEEEECCCChHHHHHH
Confidence            334445556666  44444332 24678999999999999999999999998864      26666666           


Q ss_pred             ------------CccchhhhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          103 ------------ADKYSRLASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       103 ------------~~~~~~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                                  ++.+..++++|+|.++|+.+++ ++|+.+ .+.|..+.+.+.+++.+.+
T Consensus        99 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A           99 LKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             HHHHCCCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHH
T ss_pred             HHHcCCCCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence                        4556789999999999965555 577765 4789999999998887664

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.32  E-value=2.5e-12  Score=92.84  Aligned_cols=75  Identities=21%  Similarity=0.186  Sum_probs=64.5

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVR  143 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~  143 (363)
                      ++.||++||++|+++.|.+++++..+        +.+||.+++++++++|+++ +|++++ .+|+.+.  |..+.+.|.+
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~--g~~~~~~L~~   70 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD--WPFDAPRLRA   70 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE--SCCCHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe--CCCCHHHHHH
Confidence            78899999999999999998875321        6889999999999999998 999998 8888764  8889999999


Q ss_pred             HHHhhcC
Q 017971          144 YLKKFVA  150 (363)
Q Consensus       144 ~i~~~~~  150 (363)
                      |+.+...
T Consensus        71 ~l~~~~~   77 (87)
T 1ttz_A           71 WLDAAPH   77 (87)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHHH
Confidence            9987653

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.31  E-value=5.1e-11  Score=104.17  Aligned_cols=192  Identities=14%  Similarity=0.109  Sum_probs=139.1

Q ss_pred             CCeEEcCh-hhHHHhHcC-CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           43 GKVIELDE-SNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        43 ~~v~~l~~-~~f~~~l~~-~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      ..|..|++ ++++++++. ++.++|-|++++|   ....+.|.++|+.+++.   +.|+.+.   +.++++++++.+ |+
T Consensus         6 P~v~~l~s~~~~~~~~~~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~---~~F~~t~---~~~v~~~~~v~~-p~   75 (250)
T 3ec3_A            6 PPSKEILTLKQVQEFLKDGDDVVILGVFQGVG---DPGYLQYQDAANTLRED---YKFHHTF---STEIAKFLKVSL-GK   75 (250)
T ss_dssp             CSSEECCCHHHHHHHHHHCSSCEEEEECSCTT---CHHHHHHHHHHHHHTTT---CCEEEEC---CHHHHHHHTCCS-SE
T ss_pred             CCceecCCHHHHHHHHhcCCCeEEEEEEcCCC---chHHHHHHHHHHhhhcC---cEEEEEC---cHHHHHHcCCCC-Ce
Confidence            34677754 889998887 8999999999985   58899999999988654   8898874   678899999988 99


Q ss_pred             EEEEeC--------CEEEeec--CCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeec-CC-----h-
Q 017971          121 LKIFMH--------GIPTEYY--GPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFG-LD-----E-  183 (363)
Q Consensus       121 ~~~~~~--------g~~~~y~--g~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~-~~-----~-  183 (363)
                      +++|++        ...+.|.  |.++.+.|.+|+....-|.+.+++.++ ...... ..   ++++.|. .+     . 
T Consensus        76 ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n-~~~~~~-~~---~l~~~~~~~d~~~~~~~  150 (250)
T 3ec3_A           76 LVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSN-DAKRYS-KR---PLVVVYYSVDFSFDYRT  150 (250)
T ss_dssp             EEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSCTEEEECTTT-HHHHSC-SS---SEEEEEECCCCSTTTHH
T ss_pred             EEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCCCceeecCccc-hhhhhc-cC---ccEEEEEecccccccch
Confidence            999985        3456798  579999999999999999999998864 555443 22   3344333 11     1 


Q ss_pred             ------hHHHHHHHHhhhhhHHHHhh-hcchhhhhhcCCCC--C-CeEEEEcCCCCCccccc-CCCCHHHHHHHHHhhc
Q 017971          184 ------SVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDK--V-PALVALQPSYNEHNIFY-GPFDEEFLEEFIKQNF  251 (363)
Q Consensus       184 ------~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~-p~iv~~~~~~~~~~~~~-g~~~~~~l~~fi~~~~  251 (363)
                            ..++++|+.++ ...|..+. .........+|+..  . |.++++.. .+....+. +.++.+.|.+|++...
T Consensus       151 ~~~~~~~~~~~vAk~~k-ki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~-~~~ky~~~~~~~t~~~i~~Fv~~~~  227 (250)
T 3ec3_A          151 ATQFWRNKVLEVAKDFP-EYTFAIADEEDYATEVKDLGLSESGGDVNAAILDE-SGKKFAMEPEEFDSDALREFVMAFK  227 (250)
T ss_dssp             HHHHHHHHHHHHHTTCT-TSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECT-TSCEEECCCCSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhc-ceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcC-CCceecCCcccCCHHHHHHHHHHHH
Confidence                  23666787787 55554431 22234567888874  2 46666653 33444444 6789999999998864

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.30  E-value=2e-11  Score=98.67  Aligned_cols=90  Identities=12%  Similarity=0.209  Sum_probs=75.5

Q ss_pred             CCCeEEEEEECCCChhhhhH-HHHHHHHHHHhhcCCCCeEEEEEeCc----------------------------cch--
Q 017971           59 SFDYILVDFYAPWCGHCKRL-APQLDEAAPILAKLKEPIVIAKVDAD----------------------------KYS--  107 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~-~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~--  107 (363)
                      ++++++|.||++||++|+.. .|.+.++.+.+.+.  ++.+..|+++                            ...  
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  104 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED--KVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDG  104 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT--TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC--CEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccch
Confidence            56899999999999999996 99999999988643  4888888863                            222  


Q ss_pred             ---hhhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          108 ---RLASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       108 ---~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                         .+++.|++.++|+++++ ++|+.+ .+.|..+.+.+.+.+.+.+.
T Consensus       105 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  152 (158)
T 3eyt_A          105 AMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLG  152 (158)
T ss_dssp             SSCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhc
Confidence               58999999999999999 467765 47899999999999988865

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.30  E-value=3e-11  Score=100.35  Aligned_cols=91  Identities=11%  Similarity=0.235  Sum_probs=75.1

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCC----CCeEEEEEeCcc-chhhhhhC--------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK----EPIVIAKVDADK-YSRLASKQ--------------------  113 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~----~~v~~~~vd~~~-~~~l~~~~--------------------  113 (363)
                      ++++++|.||++||++|+...|.+.++.+.+.+.+    +++.|..|+++. +++.+++|                    
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            56899999999999999999999999999987653    234999999988 66666655                    


Q ss_pred             -----CcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          114 -----EIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       114 -----~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                           ++.++|+++++ ++|+.+ .+.|..+.+.|.+++.+.+
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                 68999977776 567765 4889999999999998765

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.30  E-value=3e-11  Score=97.18  Aligned_cols=113  Identities=19%  Similarity=0.372  Sum_probs=85.8

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc--
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY--  106 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--  106 (363)
                      .|...|+....+.++..+.+.+.       ++++++|.||++||++|+...|.+.++.+.+.+.  ++.+..|+++.+  
T Consensus         4 ~G~~~p~~~l~~~~g~~~~l~~~-------~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~~~~   74 (154)
T 3kcm_A            4 EENPAPDFTLNTLNGEVVKLSDL-------KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK--PFRMLCVSIDEGGK   74 (154)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGG-------TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS--SEEEEEEECCTTHH
T ss_pred             CCCCCCCeEEEcCCCCEEehhhc-------CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEEcCCcch
Confidence            34455665555566666666543       5689999999999999999999999999988653  488888988875  


Q ss_pred             ---------------------hhhhhhCCcCcCCEEEEE-eCCEEEe-ecCCC--CHHHHHHHHHhhcC
Q 017971          107 ---------------------SRLASKQEIDAFPTLKIF-MHGIPTE-YYGPR--KAELLVRYLKKFVA  150 (363)
Q Consensus       107 ---------------------~~l~~~~~i~~~Pt~~~~-~~g~~~~-y~g~~--~~~~i~~~i~~~~~  150 (363)
                                           ..+++.|++.++|+++++ ++|+.+. +.|..  +.+.+.+++.+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~  143 (154)
T 3kcm_A           75 VAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELS  143 (154)
T ss_dssp             HHHHHHHHHHCCCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC--
T ss_pred             HHHHHHHHHcCCCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHH
Confidence                                 448899999999977777 5677653 77764  66788888877654

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.29  E-value=4.9e-11  Score=95.99  Aligned_cols=106  Identities=12%  Similarity=0.050  Sum_probs=81.1

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh-
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR-  108 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-  108 (363)
                      +...|+....+.++..+.+.+-       .+++++|.||++||++|+...|.+.++.+.+.+.  ++.+..|+++...+ 
T Consensus        12 g~~~p~f~l~~~~G~~~~l~~~-------~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~vv~i~~d~~~~~   82 (152)
T 2lrt_A           12 EASIIDIQLKDLKGNTRSLTDL-------KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ--GFEIYQISLDGDEHF   82 (152)
T ss_dssp             TTCSCCCCEEBTTSCEECTTTG-------GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECSCCHHH
T ss_pred             CCCCCCeEEEcCCCCEEeHHHh-------CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC--CeEEEEEEccCCHHH
Confidence            3445555555555555555432       4589999999999999999999999999998764  48999999987654 


Q ss_pred             ----------------------hhhhCCcCcCCEEEEEe-CCEEEe-ecCCCCHHHHHHH
Q 017971          109 ----------------------LASKQEIDAFPTLKIFM-HGIPTE-YYGPRKAELLVRY  144 (363)
Q Consensus       109 ----------------------l~~~~~i~~~Pt~~~~~-~g~~~~-y~g~~~~~~i~~~  144 (363)
                                            +++.|++.++|+++++. +|+.+. +.|..+.+....-
T Consensus        83 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~e~~~~~  142 (152)
T 2lrt_A           83 WKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENIKDLDEAIKK  142 (152)
T ss_dssp             HHHHHTTCSSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEETTTCSCHHHHHHH
T ss_pred             HHHHHhCCCceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEecCCHHHHHHHHHH
Confidence                                  88899999999999995 677654 6787776655443

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.28  E-value=7.4e-12  Score=100.97  Aligned_cols=86  Identities=21%  Similarity=0.315  Sum_probs=70.2

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC-----------------------ccchhhhhhCCc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA-----------------------DKYSRLASKQEI  115 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i  115 (363)
                      .+++++|.||++||++|++..|.+.++++.     .++.+..|++                       +.+..+++.|++
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-----~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  115 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD-----KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGV  115 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC-----TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTC
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc-----CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCc
Confidence            468999999999999999999999998754     2377777775                       345678999999


Q ss_pred             CcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          116 DAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       116 ~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      .++|+++++ ++|+.+ .+.|..+.+.+.+++.+.+
T Consensus       116 ~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A          116 YGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             CSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             CccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence            999977666 677765 4889999999998887764

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.26  E-value=3.1e-11  Score=98.43  Aligned_cols=86  Identities=20%  Similarity=0.246  Sum_probs=73.7

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc------------------cc--------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD------------------KY--------------  106 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~------------------~~--------------  106 (363)
                      ++++++|.||++||++|+...|.+.++.+.+.    ++.+..|+++                  .+              
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~----~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR----EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDP  111 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT----TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCT
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC----CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCC
Confidence            56899999999999999999999999998875    4999999987                  34              


Q ss_pred             --------hhhhhhCCcCcCCEEEEEe-CCEEEeecCCC-CHHHHHHHHHhhc
Q 017971          107 --------SRLASKQEIDAFPTLKIFM-HGIPTEYYGPR-KAELLVRYLKKFV  149 (363)
Q Consensus       107 --------~~l~~~~~i~~~Pt~~~~~-~g~~~~y~g~~-~~~~i~~~i~~~~  149 (363)
                              ..+++.|+|.++|+++++. +|+.+. .|.. +.+.|.+.+.+.+
T Consensus       112 ~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          112 SWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             TSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEESCCHHHHHHHHHHC-
T ss_pred             CeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHHHh
Confidence                    3789999999999999995 566555 8888 8999999988764

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.23  E-value=1.2e-10  Score=93.33  Aligned_cols=112  Identities=18%  Similarity=0.198  Sum_probs=85.6

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChh--hhhHHHHHHHHHHHh-hcCCCCeEEEEEeCcc
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGH--CKRLAPQLDEAAPIL-AKLKEPIVIAKVDADK  105 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~--C~~~~~~~~~~a~~~-~~~~~~v~~~~vd~~~  105 (363)
                      .|...|+....+.++..+.++++.+     ++++++|.||++||++  |+...|.+.++.+.+ ++.  ++.+..|+++.
T Consensus         7 ~G~~~p~f~l~~~~g~~~~l~~~~~-----~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~--~~~~v~v~~d~   79 (150)
T 3fw2_A            7 IGKYAPFFSLPNAKGEKITRSSDAF-----KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK--YIGMLGISLDV   79 (150)
T ss_dssp             TTSBCCCCCEEBTTCCEECTTSTTT-----TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS--SEEEEEEECCS
T ss_pred             CCCcCCccEeECCCCCEEecchhhh-----CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC--CeEEEEEEcCC
Confidence            3555666666666777777763333     5689999999999999  999999999999988 443  48899998876


Q ss_pred             ch-------------------------hhhhhCCcCcCCEEEEE-eCCEEEeecCCCCHHHHHHHHHhhc
Q 017971          106 YS-------------------------RLASKQEIDAFPTLKIF-MHGIPTEYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       106 ~~-------------------------~l~~~~~i~~~Pt~~~~-~~g~~~~y~g~~~~~~i~~~i~~~~  149 (363)
                      .+                         .+++.|++.++|+++++ ++|+.+...  .+.+.+.+.+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~--~~~~~l~~~l~~ll  147 (150)
T 3fw2_A           80 DKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN--LRGEELKKKIENIV  147 (150)
T ss_dssp             CHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES--CCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEcc--CCHHHHHHHHHHHH
Confidence            54                         78999999999999999 566654322  27777877776653

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.23  E-value=2.4e-11  Score=95.50  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=93.3

Q ss_pred             hcCCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCC
Q 017971          250 NFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKL  328 (363)
Q Consensus       250 ~~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~  328 (363)
                      .+.|++.++|.+++..+..++.|+++.|+..  ....+.+...+.++|+++++ +.|+++|.++++++++.||+ ...+.
T Consensus         3 c~~plv~~~t~~~f~~~~~~~~pv~v~f~a~--~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi-~~~~i   79 (133)
T 2djk_A            3 LGSPLIGEIGPETYSDYMSAGIPLAYIFAET--AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNL-KTDKF   79 (133)
T ss_dssp             CSCCCSEECCHHHHHHHHHTTSCEEEEECSC--SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTC-CSSSS
T ss_pred             cccCceeccChHHHHHHhcCCCCEEEEEecC--hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCC-CcccC
Confidence            4789999999999998888888888888754  34566889999999999988 99999999999999999999 44569


Q ss_pred             CeEEEEeC-CCCeeEEE--EEEeehhhhhHhhhhhc
Q 017971          329 PKMVVWDG-NENYLTVS--INVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       329 P~~vi~~~-~~~y~~~~--~~~~~~~~~~~~~~~~~  361 (363)
                      |++++++. +|+.|...  +.+..+.+..|+..+|+
T Consensus        80 Ptl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~  115 (133)
T 2djk_A           80 PAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             SEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHH
T ss_pred             CEEEEEecCcCcccCCCCccccCHHHHHHHHHHHHc
Confidence            99999996 56556665  89999999999999885

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.23  E-value=1.7e-10  Score=103.36  Aligned_cols=199  Identities=16%  Similarity=0.231  Sum_probs=138.9

Q ss_pred             CCCceecCChHHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHHhhhhhHHHHh-hh--cchhhhhhcCCCCC
Q 017971          150 APDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKKKAWFAVA-KD--FSEDTMVLYDFDKV  218 (363)
Q Consensus       150 ~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~  218 (363)
                      .+.+.+++. .++++.+.+...  +++|.|+..+        +.+.+++..+.+...+..+ .+  ....++..|++.++
T Consensus        16 ~~~vv~lt~-~~f~~~i~~~~~--~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~   92 (298)
T 3ed3_A           16 DPHISELTP-KSFDKAIHNTNY--TSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGF   92 (298)
T ss_dssp             CTTCEECCH-HHHHHHHTSSSS--CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBS
T ss_pred             CCCeEEeCH-HHHHHHHHhCCC--eEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCcc
Confidence            346777855 679999954332  6777777653        3356666666654333322 12  45788999999999


Q ss_pred             CeEEEEcCCC----------------CCcccccCCCCHHHHHHHHHhhcCCCcccCC-hhhHHhhhcC-CCcEEEEEEeC
Q 017971          219 PALVALQPSY----------------NEHNIFYGPFDEEFLEEFIKQNFLPLSVPIN-QDTLNLLKDD-KRKIVLAIVED  280 (363)
Q Consensus       219 p~iv~~~~~~----------------~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt-~~~~~~l~~~-~~~~~i~~~~~  280 (363)
                      |++++|+++.                .....|.|..+.+.|.+|+.+...+.+.+++ .+.++.+... ..+.+++ +..
T Consensus        93 Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~-fs~  171 (298)
T 3ed3_A           93 PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVL-FSK  171 (298)
T ss_dssp             SEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEE-EES
T ss_pred             ceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEE-EcC
Confidence            9999998743                1256899999999999999999888888885 4677776655 3555554 443


Q ss_pred             CChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHH--hhcCCC---------------CCCCCCeEEEEeCC-CCee
Q 017971          281 ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFA--DTFEAN---------------KKSKLPKMVVWDGN-ENYL  341 (363)
Q Consensus       281 ~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~--~~~gi~---------------~~~~~P~~vi~~~~-~~y~  341 (363)
                      ...     ....++.+|..+++ +.|+.++..+-....  +.|+..               ...+.|+++++++. +++.
T Consensus       172 ~~~-----~~~~f~~~A~~~~~~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~  246 (298)
T 3ed3_A          172 QDK-----ISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFW  246 (298)
T ss_dssp             SSS-----CCHHHHHHHHHTBTTEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEE
T ss_pred             CCc-----chHHHHHHHHHhhcCcEEEEEcchHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceE
Confidence            222     23577888999887 999999876433222  333310               12568999999985 7888


Q ss_pred             EEE-EEEeehhhhhHhh
Q 017971          342 TVS-INVLKTRVCFFML  357 (363)
Q Consensus       342 ~~~-~~~~~~~~~~~~~  357 (363)
                      ..+ +....+.|..|+.
T Consensus       247 ~y~g~~~~~~~i~~fi~  263 (298)
T 3ed3_A          247 EYEGNSINKNDISKFLR  263 (298)
T ss_dssp             ECCCSSCCHHHHHHHHH
T ss_pred             EeccccCCHHHHHHHHH
Confidence            888 4789999999988

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.20  E-value=8.8e-11  Score=93.38  Aligned_cols=72  Identities=19%  Similarity=0.267  Sum_probs=61.3

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc------------------------hhhhhhCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------------------SRLASKQE  114 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~  114 (363)
                      ++++++|.||++||++|+...|.+.++++.+.+. .++.+..|+++..                        ..++++|+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  105 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD  105 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcC
Confidence            5689999999999999999999999999988641 2588888988763                        57899999


Q ss_pred             cCcCCEEEEEe--CCEEEe
Q 017971          115 IDAFPTLKIFM--HGIPTE  131 (363)
Q Consensus       115 i~~~Pt~~~~~--~g~~~~  131 (363)
                      |.++|+++++.  +|+.+.
T Consensus       106 v~~~P~~~lid~~~G~i~~  124 (144)
T 1i5g_A          106 VKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEE
T ss_pred             CCCCCEEEEEECCCCcEEe
Confidence            99999999996  676554

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.20  E-value=2.7e-10  Score=94.71  Aligned_cols=111  Identities=20%  Similarity=0.358  Sum_probs=82.6

Q ss_pred             CCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-----
Q 017971           32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----  106 (363)
Q Consensus        32 ~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----  106 (363)
                      ..|+....+.++..+.+.+-       ++++++|.||++||++|+...|.+.++.+.+.+.  ++.+..|+++..     
T Consensus        39 ~~p~f~l~~~~G~~~~l~~~-------~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~  109 (186)
T 1jfu_A           39 KLPDLAFEDADGKPKKLSDF-------RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP--NFEVVAINIDTRDPEKP  109 (186)
T ss_dssp             BCCCCEEECTTSCEEEGGGG-------TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT--TEEEEEEECCCSCTTHH
T ss_pred             cCCCcEeEcCCCCEeeHHHc-------CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccC--CcEEEEEECCCCCHHHH
Confidence            34444444445555555432       5689999999999999999999999999988643  488888988765     


Q ss_pred             hhhhhhCCcC-----------------------cCCEEEEE-eCCEEE-eecCCCC--HHHHHHHHHhhcCC
Q 017971          107 SRLASKQEID-----------------------AFPTLKIF-MHGIPT-EYYGPRK--AELLVRYLKKFVAP  151 (363)
Q Consensus       107 ~~l~~~~~i~-----------------------~~Pt~~~~-~~g~~~-~y~g~~~--~~~i~~~i~~~~~~  151 (363)
                      ..+++++++.                       ++|+++++ ++|+.+ .+.|..+  .+++.+++.+.+..
T Consensus       110 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          110 KTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK  181 (186)
T ss_dssp             HHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred             HHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence            4567777774                       89999999 567765 4778654  78899998887654

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.20  E-value=1.4e-10  Score=95.78  Aligned_cols=85  Identities=20%  Similarity=0.320  Sum_probs=69.8

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC-----------------------ccchhhhhhCCc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA-----------------------DKYSRLASKQEI  115 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i  115 (363)
                      .+++++|.||++||++|+...|.+.++.+.      ++.+..|++                       +.+..+++.|++
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~------~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  130 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ------GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGV  130 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT------TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC------CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCC
Confidence            568999999999999999999999998864      266777764                       445678899999


Q ss_pred             CcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          116 DAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       116 ~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      .++|+.+++ ++|+.+ .+.|..+.+.+.+++.+.+
T Consensus       131 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          131 YGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             CSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            999988888 467655 4789999999988887664

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.18  E-value=7.7e-11  Score=93.64  Aligned_cols=73  Identities=21%  Similarity=0.323  Sum_probs=61.3

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc------------------------hhhhhhCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------------------SRLASKQE  114 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~  114 (363)
                      ++++++|.||++||++|+...|.+.++++.+.+. .++.+..|+++.+                        ..++++|+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcC
Confidence            5689999999999999999999999999988631 2488888888763                        46899999


Q ss_pred             cCcCCEEEEEe--CCEEEee
Q 017971          115 IDAFPTLKIFM--HGIPTEY  132 (363)
Q Consensus       115 i~~~Pt~~~~~--~g~~~~y  132 (363)
                      |.++|+++++.  +|+.+..
T Consensus       106 v~~~Pt~~lid~~~G~i~~~  125 (144)
T 1o73_A          106 VESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEES
T ss_pred             CCCCCEEEEEECCCCeEEec
Confidence            99999999998  6766543

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.18  E-value=9.9e-11  Score=93.35  Aligned_cols=72  Identities=19%  Similarity=0.283  Sum_probs=61.2

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc------------------------hhhhhhCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------------------SRLASKQE  114 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~  114 (363)
                      ++++++|.||++||++|+...|.+.++++.+.+. .++.+..|+++.+                        ..++++|+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  105 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN  105 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhc-CCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhC
Confidence            5689999999999999999999999999988631 2488888888753                        57899999


Q ss_pred             cCcCCEEEEEe--CCEEEe
Q 017971          115 IDAFPTLKIFM--HGIPTE  131 (363)
Q Consensus       115 i~~~Pt~~~~~--~g~~~~  131 (363)
                      |.++|+++++.  +|+.+.
T Consensus       106 v~~~Pt~~lid~~~G~i~~  124 (146)
T 1o8x_A          106 VESIPTLIGVDADSGDVVT  124 (146)
T ss_dssp             CCSSSEEEEEETTTCCEEE
T ss_pred             CCCCCEEEEEECCCCeEEE
Confidence            99999999997  676554

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.18  E-value=1.2e-10  Score=106.42  Aligned_cols=89  Identities=13%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------------chhhhh
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLAS  111 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~  111 (363)
                      ++++++|.||++||++|+...|.+.++++++++.  ++.+..|+++.                           +..+++
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~--~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~  158 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS--GLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWT  158 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC--CeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHH
Confidence            4689999999999999999999999999998754  38899998752                           357899


Q ss_pred             hCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          112 KQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       112 ~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      .|+|.++|+++++ ++|+.+ .+.|..+.+.+.+++.+.+
T Consensus       159 ~ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          159 NYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             HTTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHH
T ss_pred             HcCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            9999999999999 567765 4789999999999988765

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.16  E-value=2e-10  Score=96.35  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=82.2

Q ss_pred             CCCcccccc-CCCCCeEEcChhhHHHhHcCCC-eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----
Q 017971           31 LSSEEETKF-KIDGKVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----  104 (363)
Q Consensus        31 ~~~~~~~~~-~~~~~v~~l~~~~f~~~l~~~~-~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----  104 (363)
                      ...|+.... +.++..+.+.+      + .++ +++|.||++||++|+...|.+.++.+++.+.  ++.+..|+++    
T Consensus        22 ~~~p~f~l~~~~~G~~~~l~~------~-~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~v~~d~~~~   92 (196)
T 2ywi_A           22 KQAPPFALTNVIDGNVVRLED------V-KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK--GVSFVAINSNDAEQ   92 (196)
T ss_dssp             CBCCCCEEEETTTCCEEEHHH------H-CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG--TCEEEEEECSCTTT
T ss_pred             CcCCceeeeecCCCCEEeHHH------h-CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCcccc
Confidence            334444444 44454444432      1 344 6999999999999999999999999988754  3888889883    


Q ss_pred             -------------------------cchhhhhhCCcCcCCEEEEEe-CCEEEe----------ecCCCCHHHHHHHHHhh
Q 017971          105 -------------------------KYSRLASKQEIDAFPTLKIFM-HGIPTE----------YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       105 -------------------------~~~~l~~~~~i~~~Pt~~~~~-~g~~~~----------y~g~~~~~~i~~~i~~~  148 (363)
                                               .+..+++.|++.++|+++++. +|+.+.          +.|..+.+.|.+.+.+.
T Consensus        93 ~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~l  172 (196)
T 2ywi_A           93 YPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDAL  172 (196)
T ss_dssp             CGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHH
Confidence                                     456789999999999999995 666542          24667888898888877


Q ss_pred             cC
Q 017971          149 VA  150 (363)
Q Consensus       149 ~~  150 (363)
                      +.
T Consensus       173 l~  174 (196)
T 2ywi_A          173 LE  174 (196)
T ss_dssp             HH
T ss_pred             Hc
Confidence            64

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.16  E-value=1.9e-10  Score=95.84  Aligned_cols=109  Identities=15%  Similarity=0.117  Sum_probs=81.6

Q ss_pred             CCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC-------
Q 017971           31 LSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA-------  103 (363)
Q Consensus        31 ~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-------  103 (363)
                      ...|+....+.++..+.+.+-       .+++++|.||++||++|+...|.+.++.+.+.+.   +.+..|++       
T Consensus        11 ~~~p~f~l~~~~G~~~~l~~~-------~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~   80 (188)
T 2cvb_A           11 SPLIDAELPDPRGGRYRLSQF-------HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYP   80 (188)
T ss_dssp             CBCCCCEEECTTSCEEEGGGC-------CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCG
T ss_pred             CCCCCceeecCCCCEEeHHHh-------CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCcccccc
Confidence            344555555555655555432       4589999999999999999999999999987643   88899988       


Q ss_pred             ----------------------ccchhhhhhCCcCcCCEEEEEe-CCEEEeecCC----------CCHHHHHHHHHhhcC
Q 017971          104 ----------------------DKYSRLASKQEIDAFPTLKIFM-HGIPTEYYGP----------RKAELLVRYLKKFVA  150 (363)
Q Consensus       104 ----------------------~~~~~l~~~~~i~~~Pt~~~~~-~g~~~~y~g~----------~~~~~i~~~i~~~~~  150 (363)
                                            +.+.++++.|++.++|+++++. +|+.+ +.|.          .+.+.|.+.+.+.+.
T Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~-~~g~~~~~~~~~g~~~~~~l~~~i~~ll~  159 (188)
T 2cvb_A           81 EDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLR-YHGRVNDNPKDPSKVQSHDLEAAIEALLR  159 (188)
T ss_dssp             GGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEE-EEECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCCCeEEEECCCCcEE-EEEecCCccccccccCHHHHHHHHHHHHc
Confidence                                  3456789999999999999994 56544 3343          356788888877764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.13  E-value=2.2e-10  Score=90.92  Aligned_cols=84  Identities=19%  Similarity=0.199  Sum_probs=65.5

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc--------------------------hhhhhh
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY--------------------------SRLASK  112 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------------------------~~l~~~  112 (363)
                      ++++++|.||++||++|+...|.+.++.+.+++.  ++.+..|+++.+                          ..+++.
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  108 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD--KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKK  108 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT--TEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC--CEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHH
Confidence            5689999999999999999999999999887643  488888887743                          247788


Q ss_pred             CCcCcCCEEEEEe-CCEEEeecCCCCHHHHHHHHH
Q 017971          113 QEIDAFPTLKIFM-HGIPTEYYGPRKAELLVRYLK  146 (363)
Q Consensus       113 ~~i~~~Pt~~~~~-~g~~~~y~g~~~~~~i~~~i~  146 (363)
                      |++.++|+.+++. +|+.+. .+ ...+++.+.+.
T Consensus       109 ~~v~~~P~~~lid~~G~i~~-~~-~~~~~l~~~l~  141 (143)
T 4fo5_A          109 YDLRKGFKNFLINDEGVIIA-AN-VTPEKLTEILK  141 (143)
T ss_dssp             TTGGGCCCEEEECTTSBEEE-ES-CCHHHHHHHHT
T ss_pred             cCCCCCCcEEEECCCCEEEE-cc-CCHHHHHHHHH
Confidence            9999999999997 565443 32 24666666654

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.12  E-value=2e-10  Score=93.79  Aligned_cols=72  Identities=25%  Similarity=0.336  Sum_probs=61.5

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc------------------------hhhhhhCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------------------SRLASKQE  114 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~  114 (363)
                      ++++++|.||++||++|++..|.+.++++.+++. .++.+..|+++..                        ..+++.|+
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS-KNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYS  125 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccC-CCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcC
Confidence            5689999999999999999999999999998752 2588888888766                        67899999


Q ss_pred             cCcCCEEEEEeC--CEEEe
Q 017971          115 IDAFPTLKIFMH--GIPTE  131 (363)
Q Consensus       115 i~~~Pt~~~~~~--g~~~~  131 (363)
                      |.++|+++++..  |+.+.
T Consensus       126 v~~~Pt~~lid~~~G~iv~  144 (165)
T 3s9f_A          126 VESIPTLIGLNADTGDTVT  144 (165)
T ss_dssp             CCSSSEEEEEETTTCCEEE
T ss_pred             CCCCCEEEEEeCCCCEEEe
Confidence            999999999983  65544

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.70  E-value=7.4e-12  Score=99.41  Aligned_cols=78  Identities=27%  Similarity=0.405  Sum_probs=62.7

Q ss_pred             CCC-eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------------------------hhhhhh
Q 017971           59 SFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------------------SRLASK  112 (363)
Q Consensus        59 ~~~-~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~  112 (363)
                      +++ +++|.||++||++|+...|.+.++++.+++.+.++.+..|+++.+                         ..++++
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            345 999999999999999999999999988854334577888877655                         378999


Q ss_pred             CCcCcCCEEEEEe-CCEEEeecCCC
Q 017971          113 QEIDAFPTLKIFM-HGIPTEYYGPR  136 (363)
Q Consensus       113 ~~i~~~Pt~~~~~-~g~~~~y~g~~  136 (363)
                      |+|.++|+++++. +|+.+...|..
T Consensus       104 ~~v~~~P~~~lid~~G~i~~~~~~~  128 (143)
T 2lus_A          104 YGITGIPALVIVKKDGTLISMNGRG  128 (143)
Confidence            9999999999997 67665554433

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.10  E-value=5.6e-10  Score=95.44  Aligned_cols=111  Identities=14%  Similarity=0.154  Sum_probs=81.3

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCC-eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----  104 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~-~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----  104 (363)
                      |...|+....+.++..+.+.+-       .++ +++|.||++||++|+...|.+.++.+++++.  .+.+..|+++    
T Consensus        35 G~~aP~f~l~~~~G~~v~l~~~-------~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Vs~d~~~~  105 (218)
T 3u5r_E           35 GTRAADFVLPDAGGNLFTLAEF-------KDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ--GLAVVAINSNDAQA  105 (218)
T ss_dssp             TCBCCCCCEECTTCCEECGGGG-------TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT--TEEEEEEECSCTTT
T ss_pred             CCcCCCcEeECCCCCEEeHHHh-------CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCcccc
Confidence            4445555555555555544331       345 5999999999999999999999999998754  3889999983    


Q ss_pred             -------------------------cchhhhhhCCcCcCCEEEEEe-CCEEEeecC-----------CCCHHHHHHHHHh
Q 017971          105 -------------------------KYSRLASKQEIDAFPTLKIFM-HGIPTEYYG-----------PRKAELLVRYLKK  147 (363)
Q Consensus       105 -------------------------~~~~l~~~~~i~~~Pt~~~~~-~g~~~~y~g-----------~~~~~~i~~~i~~  147 (363)
                                               .+..+++.|++.++|+++++. +|+. .|.|           ..+.+.|.+.+.+
T Consensus       106 ~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i-~~~g~~d~~~~~~~~~~~~~~l~~~i~~  184 (218)
T 3u5r_E          106 FPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAACTPDFFLYDRERRL-VYHGQFDDARPGNGKDVTGADLRAAVDA  184 (218)
T ss_dssp             CGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCCEESEEEEECTTCBE-EEEECSSSCCTTSCCCCCCHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCCCCCeEEEECCCCcE-EEeccccccccccccccCHHHHHHHHHH
Confidence                                     456899999999999999995 5654 4554           2345677777766


Q ss_pred             hcC
Q 017971          148 FVA  150 (363)
Q Consensus       148 ~~~  150 (363)
                      .+.
T Consensus       185 ll~  187 (218)
T 3u5r_E          185 VLK  187 (218)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            654

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.05  E-value=1.4e-10  Score=88.64  Aligned_cols=87  Identities=21%  Similarity=0.296  Sum_probs=61.3

Q ss_pred             hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-----hhhhhhCCcCcCCEEEEEe
Q 017971           51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----SRLASKQEIDAFPTLKIFM  125 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~  125 (363)
                      +.++++++. +.+++ ||++||++|++..|.+++++..       +.+..+|.+.+     ..+++++++.++|++  |.
T Consensus        11 ~~~~~~~~~-~~vv~-f~a~~C~~C~~~~~~l~~~~~~-------~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~   79 (116)
T 2e7p_A           11 KKAKELASS-APVVV-FSKTYCGYCNRVKQLLTQVGAS-------YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FI   79 (116)
T ss_dssp             HHHHHHHTS-SSEEE-EECTTCHHHHHHHHHHHHHTCC-------CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EE
T ss_pred             HHHHHHHcC-CCEEE-EECCCChhHHHHHHHHHHcCCC-------eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EE
Confidence            445556654 45555 9999999999999999887521       45666666554     569999999999999  56


Q ss_pred             CCEEEe-ecCCC---CHHHHHHHHHhh
Q 017971          126 HGIPTE-YYGPR---KAELLVRYLKKF  148 (363)
Q Consensus       126 ~g~~~~-y~g~~---~~~~i~~~i~~~  148 (363)
                      +|+.+. +.|..   +.+.|.+|+.+.
T Consensus        80 ~g~~v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           80 GGKQIGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             TTEEEECHHHHHHHHHTTCHHHHHHHT
T ss_pred             CCEEECChHHHHHHHhCChHHHHHHHc
Confidence            887664 44433   445566666553

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.05  E-value=2.2e-09  Score=99.74  Aligned_cols=192  Identities=11%  Similarity=0.128  Sum_probs=114.2

Q ss_pred             CeEEcCh-hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIELDE-SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l~~-~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .+..+++ +++++ +..++.++|.|++++|..   ..+.|.++|+.+++.   +.|+...+    ++++++++.++| ++
T Consensus       119 ~v~~l~~~~~l~~-l~~~~~~~v~ff~~~~~~---~~~~f~~~A~~~~~~---~~F~~~~~----~~~~~~~v~~~p-i~  186 (382)
T 2r2j_A          119 PIQEIRDLAEITT-LDRSKRNIIGYFEQKDSD---NYRVFERVANILHDD---CAFLSAFG----DVSKPERYSGDN-II  186 (382)
T ss_dssp             CCEEC-------------CCEEEEEESCSSSH---HHHHHHHHHHHHTTT---CEEEEEES----CC--------CE-EE
T ss_pred             CceecCCHHHHHH-hcCCCCEEEEEECCCCCh---hHHHHHHHHHHhhcc---ceEEEEeh----hhHHhhCCCCCc-eE
Confidence            3556643 46777 667788999999998654   467899999988654   88888886    367889999999 65


Q ss_pred             EEeCC---EEEeecCCC-CHHHHHHHHHhhcCCCceecCChHHHHHHHHhcCCcccEEEeecCCh--h---HH-HHH---
Q 017971          123 IFMHG---IPTEYYGPR-KAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--S---VM-SNL---  189 (363)
Q Consensus       123 ~~~~g---~~~~y~g~~-~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--~---~~-~~~---  189 (363)
                      ++..+   ....|.|.+ +.+.|.+|+..+..|.+.+++.+ .+.++.....   ++++.|....  +   .+ ..+   
T Consensus       187 ~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~-~~~~~~~~~~---~~~v~f~~~~~~~~~~~~~~~~~~~  262 (382)
T 2r2j_A          187 YKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFE-NGEELTEEGL---PFLILFHMKEDTESLEIFQNEVARQ  262 (382)
T ss_dssp             EECSSSSSCCEECCSCTTCHHHHHHHHHHHHSCSSEECCHH-HHHHHHTTCC---CEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ECCCCCCCcCcccCCCCCCHHHHHHHHHhcccCceEecChh-hHHHHhcCCC---cEEEEEecCCchHHHHHHHHHHHHH
Confidence            55542   456799998 99999999999999999999775 4667665443   4555554321  1   12 222   


Q ss_pred             HHHhhhhhHHHHh-hhcchhhhhhcCCC--CCCeEEEEcCCCCC-cccccCCCCHHHHHHHHHhhc
Q 017971          190 ALKYKKKAWFAVA-KDFSEDTMVLYDFD--KVPALVALQPSYNE-HNIFYGPFDEEFLEEFIKQNF  251 (363)
Q Consensus       190 a~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~p~iv~~~~~~~~-~~~~~g~~~~~~l~~fi~~~~  251 (363)
                      +..+++...|..+ ..........+|++  ..|.+++....... ...+.+.++.+.|.+|+++..
T Consensus       263 ~~~~~~~i~f~~id~~~~~~~~~~~gl~~~~~P~i~i~~~~~~y~~~~~~~~~~~~~i~~F~~d~~  328 (382)
T 2r2j_A          263 LISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLH  328 (382)
T ss_dssp             TGGGTTTSEEEEEETTTTHHHHHHTTCCGGGCSEEEEECSSCEEECCCSGGGGSTTHHHHHHHHHH
T ss_pred             HHHhCCeeEEEEEchHHhHHHHHHcCCCccCCCEEEEEcchhcCCCCccccccCHHHHHHHHHHHH
Confidence            2234444444333 12234467788887  57998887542110 111234456789999998863

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.04  E-value=3.6e-10  Score=83.98  Aligned_cols=81  Identities=16%  Similarity=0.189  Sum_probs=66.3

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCcCcCCEEEEEeCCEEEeecCCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPR  136 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~  136 (363)
                      ...+.++.|+++||++|+++.|.++++++       .+.|..+|.+  +++++.++|+ .++|++  +.+|+.. ..|..
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~-------~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~-~~~g~   82 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD-------RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL-MMHRV   82 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS-------SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE-EESSC
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh-------CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE-EecCC
Confidence            34678999999999999999999887542       2889999998  7899999999 999986  4677765 45668


Q ss_pred             CHHHHHHHHHhhcC
Q 017971          137 KAELLVRYLKKFVA  150 (363)
Q Consensus       137 ~~~~i~~~i~~~~~  150 (363)
                      +.+.|.+++.+...
T Consensus        83 ~~~~l~~~l~~~~~   96 (100)
T 1wjk_A           83 NTSKLEKQLRKLSG   96 (100)
T ss_dssp             CHHHHHHHHHSSSC
T ss_pred             CHHHHHHHHHHHHh
Confidence            88999999987654

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.03  E-value=1.9e-09  Score=87.43  Aligned_cols=96  Identities=17%  Similarity=0.151  Sum_probs=74.4

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCe-EEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDY-ILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---  104 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~-~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---  104 (363)
                      |..+|+....+.++..+.+.+-       .+++ ++|.|| ++||++|+...|.+.++.+++++.+  +.+..|+++   
T Consensus         5 G~~~P~f~l~~~~G~~~~l~~~-------~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d~~~   75 (161)
T 3drn_A            5 GDKAPLFEGIADNGEKISLSDY-------IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYD--VVVIGVSSDDIN   75 (161)
T ss_dssp             TSBCCCCEEEETTSCEEEGGGT-------TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTC--EEEEEEESCCHH
T ss_pred             CCcCCCeEeecCCCCEEEHHHh-------cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHH
Confidence            4455665555566666665432       3455 999999 9999999999999999999987643  888888876   


Q ss_pred             ------------------cchhhhhhCCcCc----CCEEEEEe-CCEEE-eecC
Q 017971          105 ------------------KYSRLASKQEIDA----FPTLKIFM-HGIPT-EYYG  134 (363)
Q Consensus       105 ------------------~~~~l~~~~~i~~----~Pt~~~~~-~g~~~-~y~g  134 (363)
                                        .+..+++.|++.+    +|+.+++. +|+.. .+.|
T Consensus        76 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g  129 (161)
T 3drn_A           76 SHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNS  129 (161)
T ss_dssp             HHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEec
Confidence                              5678899999999    99999995 67655 3677

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.03  E-value=1.7e-09  Score=86.49  Aligned_cols=95  Identities=14%  Similarity=0.231  Sum_probs=72.9

Q ss_pred             hhHHHhH----cCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCcCcCCEE
Q 017971           51 SNFDSAI----SSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTL  121 (363)
Q Consensus        51 ~~f~~~l----~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~  121 (363)
                      .+|++++    .++++++|.||++||..|+.+....   .++++.+++.   +.+.++|.+.  ...+.++|++.++|++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~---fv~v~~d~~~~~~~~l~~~y~v~~~P~~  105 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEEGQRYIQFYKLGDFPYV  105 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHHHHHHHHHHTCCSSSEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC---eEEEEEecCCHhHHHHHHHcCCCCCCEE
Confidence            3555554    5689999999999999999997665   4455555443   8889999865  3568899999999999


Q ss_pred             EEEeC--CEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          122 KIFMH--GIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~--g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      +++..  |+.+. ..| .+++++++++++.+
T Consensus       106 ~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l  135 (153)
T 2dlx_A          106 SILDPRTGQKLVEWHQ-LDVSSFLDQVTGFL  135 (153)
T ss_dssp             EEECTTTCCCCEEESS-CCHHHHHHHHHHHH
T ss_pred             EEEeCCCCcEeeecCC-CCHHHHHHHHHHHH
Confidence            99964  54443 555 89999988887664

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.02  E-value=1.6e-09  Score=104.85  Aligned_cols=96  Identities=14%  Similarity=0.223  Sum_probs=81.4

Q ss_pred             EEcChhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971           46 IELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        46 ~~l~~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      ..++++.++++.+ ..+..++.||++||++|+...|.+++++....    ++.+.++|.+++++++++|+|.++|++++ 
T Consensus       102 ~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~----~v~~~~vd~~~~~~~~~~~~i~svPt~~i-  176 (521)
T 1hyu_A          102 SKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTFQNEITERNVMGVPAVFV-  176 (521)
T ss_dssp             CCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTCHHHHHHTTCCSSSEEEE-
T ss_pred             CCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC----ceEEEEEechhhHHHHHHhCCCccCEEEE-
Confidence            4567777777653 34577889999999999999999999987643    49999999999999999999999999977 


Q ss_pred             eCCEEEeecCCCCHHHHHHHHHhh
Q 017971          125 MHGIPTEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       125 ~~g~~~~y~g~~~~~~i~~~i~~~  148 (363)
                       +|+.+. .|..+.++|.+|+.+.
T Consensus       177 -~g~~~~-~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          177 -NGKEFG-QGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             -TTEEEE-ESCCCHHHHHHHHCCS
T ss_pred             -CCEEEe-cCCCCHHHHHHHHhhc
Confidence             887664 4999999999998664

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=3.5e-11  Score=97.42  Aligned_cols=88  Identities=13%  Similarity=0.215  Sum_probs=64.5

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHH-HHHHhhcCCCCeEEEEEeCccchhhhhhCC-----------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDE-AAPILAKLKEPIVIAKVDADKYSRLASKQE-----------------------  114 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~-~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~-----------------------  114 (363)
                      ++++++|.||++||++|+...|.+.+ +.+.+.. ..++.+..|+++++++.+++|.                       
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~-~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  110 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKD-NADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYAL  110 (159)
Confidence            56899999999999999999999998 8777651 2348888888887665555444                       


Q ss_pred             -cCcCCEEEEE-eCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971          115 -IDAFPTLKIF-MHGIPTE-YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       115 -i~~~Pt~~~~-~~g~~~~-y~g~~~~~~i~~~i~~~  148 (363)
                       +.++|+++++ ++|+.+. +.| .+.+++.+++.+.
T Consensus       111 ~~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l  146 (159)
T 2ls5_A          111 RDAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQI  146 (159)
Confidence             6779999999 5676554 445 4555565555443

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.98  E-value=4e-09  Score=85.52  Aligned_cols=106  Identities=8%  Similarity=0.111  Sum_probs=79.9

Q ss_pred             cccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChh-hhhHHHHHHHHHHHhhcC--CCCeEEEEEeCccc-------
Q 017971           37 TKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGH-CKRLAPQLDEAAPILAKL--KEPIVIAKVDADKY-------  106 (363)
Q Consensus        37 ~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~-C~~~~~~~~~~a~~~~~~--~~~v~~~~vd~~~~-------  106 (363)
                      ...+.++..+.+++-       .+++++|.||++||++ |+...|.+.++.+.+++.  ..++.+..|+++.+       
T Consensus         7 ~l~~~~G~~~~l~~~-------~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~   79 (164)
T 2ggt_A            7 SLTTHTGERKTDKDY-------LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAI   79 (164)
T ss_dssp             EEEETTSCEEEGGGG-------TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHH
T ss_pred             EEEeCCCCEEeHHHc-------CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHH
Confidence            333445555555432       4689999999999997 999999999999988752  12588888888642       


Q ss_pred             ---------------------hhhhhhCCcCcCC---------------EEEEE-eCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971          107 ---------------------SRLASKQEIDAFP---------------TLKIF-MHGIPTE-YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       107 ---------------------~~l~~~~~i~~~P---------------t~~~~-~~g~~~~-y~g~~~~~~i~~~i~~~  148 (363)
                                           ..+++.|++...|               +.+++ ++|+.+. +.|..+.++|.+.+.+.
T Consensus        80 ~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  159 (164)
T 2ggt_A           80 ANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH  159 (164)
T ss_dssp             HHHHHTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence                                 1378899999999               66666 5677654 78888999999888776


Q ss_pred             c
Q 017971          149 V  149 (363)
Q Consensus       149 ~  149 (363)
                      +
T Consensus       160 l  160 (164)
T 2ggt_A          160 M  160 (164)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.98  E-value=5.1e-09  Score=85.51  Aligned_cols=107  Identities=14%  Similarity=0.179  Sum_probs=80.8

Q ss_pred             ccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChh-hhhHHHHHHHHHHHhhcC--CCCeEEEEEeCccc------
Q 017971           36 ETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGH-CKRLAPQLDEAAPILAKL--KEPIVIAKVDADKY------  106 (363)
Q Consensus        36 ~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~-C~~~~~~~~~~a~~~~~~--~~~v~~~~vd~~~~------  106 (363)
                      ....+.++..+.+.+-       .+++++|.||++||++ |+...|.+.++.+.+++.  ..++.+..|+++.+      
T Consensus         9 f~l~~~~G~~~~l~~~-------~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~   81 (171)
T 2rli_A            9 FHLLDHRGRARCKADF-------RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEA   81 (171)
T ss_dssp             CEEEETTSCEEETTTT-------TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHH
T ss_pred             eEEEeCCCCEEeHHHh-------CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHH
Confidence            3334445555555532       4689999999999998 999999999999988642  23588888888732      


Q ss_pred             ----------------------hhhhhhCCcCcCC---------------EEEEE-eCCEEEe-ecCCCCHHHHHHHHHh
Q 017971          107 ----------------------SRLASKQEIDAFP---------------TLKIF-MHGIPTE-YYGPRKAELLVRYLKK  147 (363)
Q Consensus       107 ----------------------~~l~~~~~i~~~P---------------t~~~~-~~g~~~~-y~g~~~~~~i~~~i~~  147 (363)
                                            ..+++.|++...|               +++++ ++|+.+. |.|..+.+.|.+.+.+
T Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  161 (171)
T 2rli_A           82 MARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRR  161 (171)
T ss_dssp             HHHHHHTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHH
Confidence                                  2578899999888               66666 5677654 7898999999988877


Q ss_pred             hc
Q 017971          148 FV  149 (363)
Q Consensus       148 ~~  149 (363)
                      .+
T Consensus       162 ll  163 (171)
T 2rli_A          162 HM  163 (171)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.98  E-value=9e-10  Score=90.13  Aligned_cols=90  Identities=19%  Similarity=0.171  Sum_probs=70.8

Q ss_pred             CCCeEEEEEECCCChh-hhhHHHHHHHHHHHhhcCC-CCeEEEEEeCccc----------------------------hh
Q 017971           59 SFDYILVDFYAPWCGH-CKRLAPQLDEAAPILAKLK-EPIVIAKVDADKY----------------------------SR  108 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~-C~~~~~~~~~~a~~~~~~~-~~v~~~~vd~~~~----------------------------~~  108 (363)
                      ++++++|.||++||++ |+...|.+.++.+.+.+.+ .++.+..|+++.+                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            5689999999999997 9999999999998776421 2489999998743                            24


Q ss_pred             hhhhCC---------------cCcCCEEEEEeCCEEEe-ecCCC--CHHHHHHHHHhh
Q 017971          109 LASKQE---------------IDAFPTLKIFMHGIPTE-YYGPR--KAELLVRYLKKF  148 (363)
Q Consensus       109 l~~~~~---------------i~~~Pt~~~~~~g~~~~-y~g~~--~~~~i~~~i~~~  148 (363)
                      +++.|+               +.++|+++++.+|+.+. +.|..  +.+.|.+.+++.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            555555               46889999999776554 67776  889999888764

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.95  E-value=3.5e-10  Score=80.32  Aligned_cols=63  Identities=22%  Similarity=0.276  Sum_probs=49.1

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhhhCCcCcCCEEEEEeCCEEE
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQEIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~Pt~~~~~~g~~~  130 (363)
                      .++.||++||++|++..|.++++++..   +.++.+..+|.+ ++.++++++|+.++|++++  +|+..
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~   66 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPS---KYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAF   66 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTT---TEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhc---CCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEE
Confidence            367899999999999999999887543   223556566654 5788899999999999987  77643

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.94  E-value=3.8e-09  Score=87.41  Aligned_cols=111  Identities=14%  Similarity=0.074  Sum_probs=79.2

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----  105 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----  105 (363)
                      +...|+....+.++..+.+.+-       ++++++|.||++||++|++..|.+.++.+++++.  .+.+..|+++.    
T Consensus        26 g~~~p~f~l~~~~G~~~~l~~~-------~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~v~vv~vs~d~~~~~   96 (181)
T 2p31_A           26 EQDFYDFKAVNIRGKLVSLEKY-------RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH--HFNVLAFPCNQFGQQ   96 (181)
T ss_dssp             -CCGGGCEEEBTTSCEEEGGGG-------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTC
T ss_pred             CCccCceEeecCCCCEecHHHc-------CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC--CEEEEEEECcCCCCC
Confidence            4455665555566666665432       5689999999999999999999999999998764  38888998853    


Q ss_pred             ---c----hhhhhh------------------------CCcCcCC-------EEEEE-eCCEEE-eecCCCCHHHHHHHH
Q 017971          106 ---Y----SRLASK------------------------QEIDAFP-------TLKIF-MHGIPT-EYYGPRKAELLVRYL  145 (363)
Q Consensus       106 ---~----~~l~~~------------------------~~i~~~P-------t~~~~-~~g~~~-~y~g~~~~~~i~~~i  145 (363)
                         .    .+++++                        |.+.++|       +.+++ ++|+.+ .+.|..+.+.|.+.+
T Consensus        97 e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i  176 (181)
T 2p31_A           97 EPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQI  176 (181)
T ss_dssp             CCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhhcCCCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHH
Confidence               1    122332                        2255678       55555 677765 478888999999988


Q ss_pred             Hhhc
Q 017971          146 KKFV  149 (363)
Q Consensus       146 ~~~~  149 (363)
                      .+.+
T Consensus       177 ~~ll  180 (181)
T 2p31_A          177 TALV  180 (181)
T ss_dssp             HTTC
T ss_pred             HHHh
Confidence            8764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.93  E-value=6.6e-09  Score=86.67  Aligned_cols=110  Identities=15%  Similarity=0.088  Sum_probs=79.0

Q ss_pred             CCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc------
Q 017971           32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK------  105 (363)
Q Consensus        32 ~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~------  105 (363)
                      ..|+....+.++..+.+.+  +     ++++++|.||++||+.|+...|.+.++.+++.+.  .+.+..|++++      
T Consensus        27 ~~p~f~l~~~~G~~~~l~~--~-----~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~   97 (190)
T 2vup_A           27 SIFDFEVLDADHKPYNLVQ--H-----KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ--GFTVLAFPCNQFGGQEP   97 (190)
T ss_dssp             SGGGSCCBBTTSSBCCGGG--G-----TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TCEEEEEECCCSTTCCC
T ss_pred             cccCeEEEcCCCCEEEHHH--c-----CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC--CeEEEEEEcCccCCCCC
Confidence            4455555555555444432  1     5689999999999999999999999999998764  38888888762      


Q ss_pred             -c----hhhh-h-----------------------------hCCcCcCC------EEEEE-eCCEEEe-ecCCCCHHHHH
Q 017971          106 -Y----SRLA-S-----------------------------KQEIDAFP------TLKIF-MHGIPTE-YYGPRKAELLV  142 (363)
Q Consensus       106 -~----~~l~-~-----------------------------~~~i~~~P------t~~~~-~~g~~~~-y~g~~~~~~i~  142 (363)
                       .    .+++ +                             .+++.++|      +.+++ ++|+.+. +.|..+.+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~  177 (190)
T 2vup_A           98 GNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIE  177 (190)
T ss_dssp             SCHHHHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHH
T ss_pred             CCHHHHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHH
Confidence             1    1222 1                             14788899      66666 6777654 78988999999


Q ss_pred             HHHHhhcC
Q 017971          143 RYLKKFVA  150 (363)
Q Consensus       143 ~~i~~~~~  150 (363)
                      +.+.+.+.
T Consensus       178 ~~i~~ll~  185 (190)
T 2vup_A          178 KKLIPLLE  185 (190)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            98887653

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.93  E-value=3.6e-09  Score=86.68  Aligned_cols=108  Identities=13%  Similarity=0.125  Sum_probs=76.7

Q ss_pred             CccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-------c
Q 017971           33 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-------K  105 (363)
Q Consensus        33 ~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-------~  105 (363)
                      .|+....+.++..+.+.+-       ++++++|.||++||+.|+ ..|.+.++.+++.+.  .+.+..|+++       +
T Consensus        12 ~~~f~l~d~~G~~~~l~~~-------~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~d   81 (171)
T 3cmi_A           12 FYKLAPVDKKGQPFPFDQL-------KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE--GFTIIGFPCNQFGHQEPG   81 (171)
T ss_dssp             GGGCCCBBTTSCBCCGGGG-------TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG--TEEEEEEEECSCC-----
T ss_pred             eeeeEEEcCCCCEecHHHc-------CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC--CeEEEEEECcccCCCCCC
Confidence            4455555555655555432       568999999999999999 999999999998764  3888888763       1


Q ss_pred             ----chhhh------------------------------hhCCcCcCC------EEEEE-eCCEEEe-ecCCCCHHHHHH
Q 017971          106 ----YSRLA------------------------------SKQEIDAFP------TLKIF-MHGIPTE-YYGPRKAELLVR  143 (363)
Q Consensus       106 ----~~~l~------------------------------~~~~i~~~P------t~~~~-~~g~~~~-y~g~~~~~~i~~  143 (363)
                          ..+++                              +.|++.++|      +.+++ ++|+.+. +.|..+.+.|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~  161 (171)
T 3cmi_A           82 SDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSE  161 (171)
T ss_dssp             -------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHH
T ss_pred             CHHHHHHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHH
Confidence                11122                              246888999      66666 6777654 788888888888


Q ss_pred             HHHhhcC
Q 017971          144 YLKKFVA  150 (363)
Q Consensus       144 ~i~~~~~  150 (363)
                      .+.+.+.
T Consensus       162 ~i~~ll~  168 (171)
T 3cmi_A          162 TIEELLK  168 (171)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            8877654

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.92  E-value=4.6e-09  Score=87.36  Aligned_cols=89  Identities=19%  Similarity=0.207  Sum_probs=71.4

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------------------------chhhhhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------------------------YSRLASK  112 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~  112 (363)
                      .+++++|.|| ++||++|+...|.+.++.+.+.+.  ++.+..|+++.                         +..+++.
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  107 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL--GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQ  107 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT--TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHH
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHH
Confidence            4589999999 999999999999999999998764  38888888764                         4568889


Q ss_pred             CCcC------cCCEEEEE-eCCEEEe-ecCC----CCHHHHHHHHHhhc
Q 017971          113 QEID------AFPTLKIF-MHGIPTE-YYGP----RKAELLVRYLKKFV  149 (363)
Q Consensus       113 ~~i~------~~Pt~~~~-~~g~~~~-y~g~----~~~~~i~~~i~~~~  149 (363)
                      |++.      ++|+++++ ++|+... +.|.    ++.++|.+.+.+..
T Consensus       108 ~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          108 FDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             hCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            9998      99999999 5676553 5554    36777877776554

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.92  E-value=7.7e-09  Score=84.32  Aligned_cols=112  Identities=14%  Similarity=0.144  Sum_probs=81.0

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----  105 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----  105 (363)
                      +...|+....+.++..+.+.+-       ++++++|.||++||++|+...|.+.++.+.+.+.  ++.+..|+++.    
T Consensus         9 g~~~p~f~l~~~~g~~~~l~~~-------~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~vs~d~~~~~   79 (170)
T 2p5q_A            9 PESVHDFTVKDAKENDVDLSIF-------KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ--GLEILAFPCNQFGEE   79 (170)
T ss_dssp             -CCGGGCEEEBTTSCEEEGGGG-------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCTTTTC
T ss_pred             CccccceEEEcCCCCEecHHHh-------CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC--CEEEEEEECCCCCCC
Confidence            4445555555666666666542       5689999999999999999999999999998764  48899998852    


Q ss_pred             ---c----hhhhh-hC-----------------------------Cc--CcCC---EEEEE-eCCEEEe-ecCCCCHHHH
Q 017971          106 ---Y----SRLAS-KQ-----------------------------EI--DAFP---TLKIF-MHGIPTE-YYGPRKAELL  141 (363)
Q Consensus       106 ---~----~~l~~-~~-----------------------------~i--~~~P---t~~~~-~~g~~~~-y~g~~~~~~i  141 (363)
                         .    .++++ ++                             ++  .++|   +.+++ ++|+.+. +.|..+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l  159 (170)
T 2p5q_A           80 EPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSL  159 (170)
T ss_dssp             CCSCHHHHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGG
T ss_pred             CCCCHHHHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHH
Confidence               1    22233 32                             34  5678   76666 5677654 7888888889


Q ss_pred             HHHHHhhcC
Q 017971          142 VRYLKKFVA  150 (363)
Q Consensus       142 ~~~i~~~~~  150 (363)
                      .+.+.+.+.
T Consensus       160 ~~~i~~ll~  168 (170)
T 2p5q_A          160 ERDIKQLLE  168 (170)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            888887764

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.91  E-value=9.5e-09  Score=83.67  Aligned_cols=112  Identities=18%  Similarity=0.094  Sum_probs=79.2

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---  105 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---  105 (363)
                      .+...|+....+.++..+.+.+-       ++++++|.||++||++|+...|.+.++.+.+.+.  .+.+..|+++.   
T Consensus         7 ~g~~~p~f~l~~~~G~~~~l~~~-------~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~   77 (169)
T 2v1m_A            7 SWNSIYEFTVKDINGVDVSLEKY-------RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK--GLRILAFPCNQFGG   77 (169)
T ss_dssp             CCCSGGGCEEEBTTSCEEEGGGG-------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTT
T ss_pred             CCcccccceeecCCCCCccHHHc-------CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC--CeEEEEEECCccCC
Confidence            34455666666666666666542       5689999999999999999999999999998764  38888998853   


Q ss_pred             -c-------hhhh-hhC-----------------------------C-----cCcCCEEEEE-eCCEEE-eecCCCCHHH
Q 017971          106 -Y-------SRLA-SKQ-----------------------------E-----IDAFPTLKIF-MHGIPT-EYYGPRKAEL  140 (363)
Q Consensus       106 -~-------~~l~-~~~-----------------------------~-----i~~~Pt~~~~-~~g~~~-~y~g~~~~~~  140 (363)
                       +       ...+ +++                             +     +..+|+.+++ ++|+.+ .+.|..+.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~  157 (169)
T 2v1m_A           78 QEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYD  157 (169)
T ss_dssp             CCCSCHHHHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGG
T ss_pred             CCCCCHHHHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHH
Confidence             1       1121 221                             3     3345777777 567665 4788888888


Q ss_pred             HHHHHHhhc
Q 017971          141 LVRYLKKFV  149 (363)
Q Consensus       141 i~~~i~~~~  149 (363)
                      |.+.+.+.+
T Consensus       158 l~~~i~~ll  166 (169)
T 2v1m_A          158 IEGDIMELL  166 (169)
T ss_dssp             GHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888877654

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.91  E-value=3.9e-09  Score=75.61  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=60.5

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch----hhhhhCC--cCcCCEEEEEeCCEEEeecCCC
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS----RLASKQE--IDAFPTLKIFMHGIPTEYYGPR  136 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~Pt~~~~~~g~~~~y~g~~  136 (363)
                      .++.|+++||++|++..+.+++++....    ++.+..+|.++++    ++.++++  +.++|++  |.+|+.+.  |  
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~--~--   71 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERD----DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG--G--   71 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHS----SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE--S--
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCC----CceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE--C--
Confidence            3678999999999999999999987643    2889999997764    7899999  9999998  45787653  2  


Q ss_pred             CHHHHHHHHHhhc
Q 017971          137 KAELLVRYLKKFV  149 (363)
Q Consensus       137 ~~~~i~~~i~~~~  149 (363)
                       .++|.+++.+..
T Consensus        72 -~~~l~~~~~~~~   83 (85)
T 1ego_A           72 -YTDFAAWVKENL   83 (85)
T ss_dssp             -SHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhc
Confidence             267888877653

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.89  E-value=1.1e-08  Score=82.63  Aligned_cols=109  Identities=13%  Similarity=0.131  Sum_probs=77.1

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCC-eEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFD-YILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--  105 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~-~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--  105 (363)
                      |...|+....+.++..+.+.+-       .++ +++|.|| ++||++|+...|.+.++.+++++.  ++.+..|+++.  
T Consensus        12 G~~~p~f~l~~~~G~~~~l~~~-------~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~~~   82 (160)
T 1xvw_A           12 GATAPDFTLRDQNQQLVTLRGY-------RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND--DSAALAISVGPPP   82 (160)
T ss_dssp             TSBCCCCEEECTTSCEEEGGGG-------TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS--SEEEEEEESCCHH
T ss_pred             CCCCCCeEeEcCCCCEEeHHHh-------cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CcEEEEEeCCCHH
Confidence            3344554445555555555432       345 9999998 999999999999999999887643  48888888763  


Q ss_pred             ---------------------chhhhhhCCcC----cCC--EEEEE-eCCEEEe-ecCCC----CHHHHHHHHHh
Q 017971          106 ---------------------YSRLASKQEID----AFP--TLKIF-MHGIPTE-YYGPR----KAELLVRYLKK  147 (363)
Q Consensus       106 ---------------------~~~l~~~~~i~----~~P--t~~~~-~~g~~~~-y~g~~----~~~~i~~~i~~  147 (363)
                                           +..+++.|++.    ++|  +.+++ ++|+.+. +.|..    ..+.+.+.+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A           83 THKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             HHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence                                 66789999998    999  66666 5676553 55643    45666666554

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.88  E-value=1.5e-08  Score=84.29  Aligned_cols=112  Identities=13%  Similarity=0.066  Sum_probs=79.5

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----  105 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----  105 (363)
                      +.+.|+....+.++..+.|++  +     ++++++|.||++||++|+...|.+.++.+++++.+  +.+..|+++.    
T Consensus        23 ~~~~p~f~l~d~~G~~~~l~~--~-----~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~   93 (187)
T 3dwv_A           23 ASSIFDFEVLDADHKPYNLVQ--H-----KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPSNQFGGQ   93 (187)
T ss_dssp             CCSGGGSCCBBTTSCBCCGGG--G-----TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGT--CEEEEEEBCCCSSC
T ss_pred             CCccCCeEEEcCCCCEeeHHH--h-----CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCC--eEEEEEECcccCCC
Confidence            344556556666665555543  2     56899999999999999999999999999997653  7777777651    


Q ss_pred             ----chhh---h---------------------------------hhCCcCcCC---EEEEE-eCCEEE-eecCCCCHHH
Q 017971          106 ----YSRL---A---------------------------------SKQEIDAFP---TLKIF-MHGIPT-EYYGPRKAEL  140 (363)
Q Consensus       106 ----~~~l---~---------------------------------~~~~i~~~P---t~~~~-~~g~~~-~y~g~~~~~~  140 (363)
                          ..++   +                                 ..+++..+|   +.+++ ++|+.+ .+.|..+.+.
T Consensus        94 e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~  173 (187)
T 3dwv_A           94 EPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKD  173 (187)
T ss_dssp             SSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHH
T ss_pred             CCCCHHHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHH
Confidence                1111   1                                 112345667   77777 577765 4789999999


Q ss_pred             HHHHHHhhcC
Q 017971          141 LVRYLKKFVA  150 (363)
Q Consensus       141 i~~~i~~~~~  150 (363)
                      |.+.+.+.+.
T Consensus       174 l~~~i~~lL~  183 (187)
T 3dwv_A          174 IEEKLIPLLG  183 (187)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHh
Confidence            9999988865

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.85  E-value=1.2e-08  Score=85.55  Aligned_cols=90  Identities=13%  Similarity=0.067  Sum_probs=73.4

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------------------------chhhhhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------------------------YSRLASK  112 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~  112 (363)
                      .+++++|.|| ++||++|+...|.+.++.+.+.+.  ++.+..|+++.                         +..+++.
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  121 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR--DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQA  121 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHH
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHH
Confidence            4589999999 999999999999999999988754  48888888763                         4567888


Q ss_pred             CCcC-----cCCEEEEEe-CCEEEe-ecCC----CCHHHHHHHHHhhcC
Q 017971          113 QEID-----AFPTLKIFM-HGIPTE-YYGP----RKAELLVRYLKKFVA  150 (363)
Q Consensus       113 ~~i~-----~~Pt~~~~~-~g~~~~-y~g~----~~~~~i~~~i~~~~~  150 (363)
                      |++.     ++|+++++. +|+.+. +.|.    .+.+++.+.+.+...
T Consensus       122 ~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          122 AGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             HTCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             hCCcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            9999     999999995 676553 5554    378999999988765

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.85  E-value=1.8e-08  Score=83.47  Aligned_cols=110  Identities=19%  Similarity=0.150  Sum_probs=76.8

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----  105 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----  105 (363)
                      +...|+....+.++..+.+.+-       ++++++|.||++||++|+...|.+.++.+++.+.  .+.+..|+++.    
T Consensus        24 g~~~p~f~l~~~~G~~~~l~~~-------~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~   94 (183)
T 2obi_A           24 ARSMHEFSAKDIDGHMVNLDKY-------RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC--GLRILAFPCNQFGKQ   94 (183)
T ss_dssp             CCSGGGCEEEBTTSCEEEGGGG-------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTC
T ss_pred             cCcccceEEEcCCCCEeeHHHc-------CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC--CeEEEEEECCCCCCC
Confidence            4445555555555655555432       5689999999999999999999999999998764  38888888752    


Q ss_pred             ---c----hhhhhhC-------------------------------C-----cCcCCEEEEE-eCCEEE-eecCCCCHHH
Q 017971          106 ---Y----SRLASKQ-------------------------------E-----IDAFPTLKIF-MHGIPT-EYYGPRKAEL  140 (363)
Q Consensus       106 ---~----~~l~~~~-------------------------------~-----i~~~Pt~~~~-~~g~~~-~y~g~~~~~~  140 (363)
                         .    .++++++                               +     ++..|+.+++ ++|+.+ .|.|..+.+.
T Consensus        95 e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~  174 (183)
T 2obi_A           95 EPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLV  174 (183)
T ss_dssp             CCSCHHHHHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHH
T ss_pred             CCCCHHHHHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHH
Confidence               1    1112221                               3     3335998888 567665 4788888888


Q ss_pred             HHHHHHhh
Q 017971          141 LVRYLKKF  148 (363)
Q Consensus       141 i~~~i~~~  148 (363)
                      |.+++.+.
T Consensus       175 l~~~i~~l  182 (183)
T 2obi_A          175 IEKDLPHY  182 (183)
T ss_dssp             HHTTSGGG
T ss_pred             HHHHHHHh
Confidence            88777654

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.84  E-value=2.5e-07  Score=80.20  Aligned_cols=192  Identities=14%  Similarity=0.114  Sum_probs=121.5

Q ss_pred             CCceecCChHHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHHhhh---hhHHHHh-h--hcchhhhhhcCCC
Q 017971          151 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKK---KAWFAVA-K--DFSEDTMVLYDFD  216 (363)
Q Consensus       151 ~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~---~~~~~~~-~--~~~~~~~~~~~~~  216 (363)
                      ..+..+++ .++++.+.....  +++|.|+..+        +.+.+++..+.+   ...+..+ .  +.+..++..|++.
T Consensus        12 ~~v~~l~~-~~f~~~i~~~~~--~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~   88 (244)
T 3q6o_A           12 DPLTLLQA-DTVRGAVLGSRS--AWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIP   88 (244)
T ss_dssp             SSSEEECT-TTHHHHHSSCSS--EEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCC
T ss_pred             CCceeCCh-hhHHHHHhhCCC--eEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCC
Confidence            45777766 458877755432  6788887653        346677777765   3333322 1  3467789999999


Q ss_pred             CCCeEEEEcCCCC----CcccccCCCCHHHHHHHHHhhc----------CCCcccCChhhHHhhh--cCCCcEEEEEEeC
Q 017971          217 KVPALVALQPSYN----EHNIFYGPFDEEFLEEFIKQNF----------LPLSVPINQDTLNLLK--DDKRKIVLAIVED  280 (363)
Q Consensus       217 ~~p~iv~~~~~~~----~~~~~~g~~~~~~l~~fi~~~~----------~p~~~~lt~~~~~~l~--~~~~~~~i~~~~~  280 (363)
                      ++|++++|+++..    ....+.| .+.+.|.+||.+..          .|.+...+..++..+.  ....+.+++| .+
T Consensus        89 ~~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~~~al~f-~~  166 (244)
T 3q6o_A           89 GFPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIF-EX  166 (244)
T ss_dssp             SSSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCSEEEEEE-EC
T ss_pred             ccCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCceEEEEE-EE
Confidence            9999999986322    2224555 68999999987751          1223344556666544  3334454444 34


Q ss_pred             CChhhHHHHHHHHHHHHHh---CCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhh
Q 017971          281 ETEEKSQKLVTTLKAAASA---NRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       281 ~~~~~~~~~~~~l~~~a~~---~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~  357 (363)
                      .+...       .+.++..   ++++.+..++.. ...+++.||+   .++|++++++++|+....+   ..-..+.|++
T Consensus       167 ~~~~~-------~~~~~~d~~~~~~i~v~~~~~~-~~~l~~~f~v---~~~Pslvl~~~~g~~~~~~---~~~~~r~~~~  232 (244)
T 3q6o_A          167 GGSYL-------AREVALDLSQHKGVAVRRVLNT-EANVVRKFGV---TDFPSCYLLFRNGSVSRVP---VLMESRSFYT  232 (244)
T ss_dssp             TTCCH-------HHHHHHHTTTCTTEEEEEEETT-CHHHHHHHTC---CCSSEEEEEETTSCEEECC---CSSSSHHHHH
T ss_pred             CCcch-------HHHHHHHhccCCceEEEEEeCc-hHHHHHHcCC---CCCCeEEEEeCCCCeEeec---cccccHHHHH
Confidence            33321       2223333   334778777765 3679999999   5789999999998766665   3344567777


Q ss_pred             hhhc
Q 017971          358 TLLQ  361 (363)
Q Consensus       358 ~~~~  361 (363)
                      ++|+
T Consensus       233 ~~l~  236 (244)
T 3q6o_A          233 AYLQ  236 (244)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7775

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.81  E-value=1.6e-08  Score=84.91  Aligned_cols=89  Identities=9%  Similarity=0.103  Sum_probs=71.8

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      ++++++|.|| ++||++|+...|.+.++.+.+.+.  ++.+..|+++.                            +.++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  109 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK--GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSI  109 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHH
Confidence            4589999999 999999999999999999988764  38888888763                            4578


Q ss_pred             hhhCCcC-----cCCEEEEEe-CCEEEe-ecCCC----CHHHHHHHHHhhc
Q 017971          110 ASKQEID-----AFPTLKIFM-HGIPTE-YYGPR----KAELLVRYLKKFV  149 (363)
Q Consensus       110 ~~~~~i~-----~~Pt~~~~~-~g~~~~-y~g~~----~~~~i~~~i~~~~  149 (363)
                      ++.|++.     ++|+.+++. +|+... +.|..    +.++|.+.+.+..
T Consensus       110 ~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          110 SRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HHHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            8999999     999999995 677654 55543    6788888887654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.80  E-value=3.1e-08  Score=81.80  Aligned_cols=114  Identities=14%  Similarity=0.043  Sum_probs=79.9

Q ss_pred             ccCCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-
Q 017971           27 TGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-  105 (363)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-  105 (363)
                      ...+.+.|+....+.++..+.+++-       ++++++|.||++||++|+...|.+.++.+.+.+.  .+.+..|+++. 
T Consensus        12 ~~~~~~~p~f~l~d~~G~~v~l~~~-------~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~~~vi~is~d~~   82 (180)
T 3kij_A           12 KPKINSFYAFEVKDAKGRTVSLEKY-------KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS--HFSVLAFPCNQF   82 (180)
T ss_dssp             CCCCCCGGGCEEEBTTSCEEEGGGG-------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT--SEEEEEEECCCS
T ss_pred             cCCcCcccceEEecCCCCEecHHHc-------CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC--CeEEEEEECCcc
Confidence            3445566676667777777766542       5689999999999999999999999999998754  38888888753 


Q ss_pred             ------c----hhhhhh-CCcC--------------------------cCCE-----EEEEeCCEEE-eecCCCCHHHHH
Q 017971          106 ------Y----SRLASK-QEID--------------------------AFPT-----LKIFMHGIPT-EYYGPRKAELLV  142 (363)
Q Consensus       106 ------~----~~l~~~-~~i~--------------------------~~Pt-----~~~~~~g~~~-~y~g~~~~~~i~  142 (363)
                            .    .+++++ +++.                          +.|+     +++-++|+.+ .|.|..+.+.+.
T Consensus        83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~  162 (180)
T 3kij_A           83 GESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIR  162 (180)
T ss_dssp             TTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTH
T ss_pred             ccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHH
Confidence                  2    234444 3321                          2565     4444678766 478888877777


Q ss_pred             HHHHhhc
Q 017971          143 RYLKKFV  149 (363)
Q Consensus       143 ~~i~~~~  149 (363)
                      +.+.+.+
T Consensus       163 ~~i~~lL  169 (180)
T 3kij_A          163 PDIAALV  169 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666553

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.80  E-value=2.8e-08  Score=84.11  Aligned_cols=68  Identities=16%  Similarity=0.103  Sum_probs=52.9

Q ss_pred             cCCCCCccccccCCC-CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           28 GRGLSSEEETKFKID-GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        28 ~~~~~~~~~~~~~~~-~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      ..+...|+....+.+ +..+.|++-       ++++++|.||++||++|++..|.+.++.+++++.  .+.+..|+++
T Consensus        21 ~~~~~~p~f~l~~~~~G~~v~l~~~-------~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~--g~~vv~v~~d   89 (208)
T 2f8a_A           21 QSMQSVYAFSARPLAGGEPVSLGSL-------RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR--GLVVLGFPCN   89 (208)
T ss_dssp             -CCCCGGGCEECBTTCSSCEEGGGG-------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECC
T ss_pred             hhcCccCceEeeeCCCCCCccHHHc-------CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC--CeEEEEEECC
Confidence            444556666666666 666666542       5689999999999999999999999999998764  3888889885

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.79  E-value=3.1e-08  Score=82.21  Aligned_cols=111  Identities=17%  Similarity=0.102  Sum_probs=76.5

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---  105 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---  105 (363)
                      .+...|+....+.++..+.+.+-       ++++++|.||++||++|+...|.+.++.+++++.  .+.+..|+++.   
T Consensus        25 ~g~~~p~f~l~~~~G~~v~l~~~-------~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~is~d~~~~   95 (185)
T 2gs3_A           25 CARSMHEFSAKDIDGHMVNLDKY-------RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC--GLRILAFPCNQFGK   95 (185)
T ss_dssp             GCCCGGGCEEEBTTSCEEEGGGG-------TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCTTTT
T ss_pred             CCCCcCCceeEcCCCCEeeHHHc-------CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC--CeEEEEEECcccCC
Confidence            34455665555666666666542       5689999999999999999999999999998764  38888888752   


Q ss_pred             -c-------hhhhhhCCc------------------------------------CcCCEEEEE-eCCEEE-eecCCCCHH
Q 017971          106 -Y-------SRLASKQEI------------------------------------DAFPTLKIF-MHGIPT-EYYGPRKAE  139 (363)
Q Consensus       106 -~-------~~l~~~~~i------------------------------------~~~Pt~~~~-~~g~~~-~y~g~~~~~  139 (363)
                       +       .++++++++                                    +..|+.+++ ++|+.+ .|.|..+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~  175 (185)
T 2gs3_A           96 QEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPL  175 (185)
T ss_dssp             CCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGG
T ss_pred             CCCCCHHHHHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHH
Confidence             1       223333322                                    224787777 467655 477877777


Q ss_pred             HHHHHHHhh
Q 017971          140 LLVRYLKKF  148 (363)
Q Consensus       140 ~i~~~i~~~  148 (363)
                      +|.+.+.+.
T Consensus       176 ~l~~~i~~l  184 (185)
T 2gs3_A          176 VIEKDLPHY  184 (185)
T ss_dssp             GGGGGHHHH
T ss_pred             HHHHHHHHh
Confidence            777666553

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.77  E-value=9e-08  Score=73.62  Aligned_cols=95  Identities=14%  Similarity=0.081  Sum_probs=80.0

Q ss_pred             CCeEEc-ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l-~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      ..+..| +.++++++++.++.++|-|+++||+.|   .+.|.++|+.+ .   .+.|+.++   ++++++++++. .|++
T Consensus        21 ~~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~---d~~F~~t~---~~~v~~~~~v~-~~~v   89 (124)
T 2l4c_A           21 QEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF-P---GVSFGIST---DSEVLTHYNIT-GNTI   89 (124)
T ss_dssp             CCCEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-T---TSEEEEEC---CHHHHHHTTCC-SSCE
T ss_pred             CcceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC-C---CceEEEEC---hHHHHHHcCCC-CCeE
Confidence            445556 457899999888999999999999988   78999999987 3   38999886   57799999998 8999


Q ss_pred             EEEeCC--EEEeecC----CCCHHHHHHHHHhh
Q 017971          122 KIFMHG--IPTEYYG----PRKAELLVRYLKKF  148 (363)
Q Consensus       122 ~~~~~g--~~~~y~g----~~~~~~i~~~i~~~  148 (363)
                      .+|++.  ....|.|    ..+.+.|.+||..+
T Consensus        90 vlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           90 CLFRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             EEEETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             EEEEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            999975  4667986    78999999999875

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.74  E-value=2.3e-08  Score=85.19  Aligned_cols=80  Identities=15%  Similarity=0.301  Sum_probs=60.9

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe-------------------------------------
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-------------------------------------  102 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-------------------------------------  102 (363)
                      ++++++.||++||++|+++.|.++++++.      ++.+..+.                                     
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~------~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~  159 (216)
T 1eej_A           86 EKHVITVFTDITCGYCHKLHEQMADYNAL------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA  159 (216)
T ss_dssp             CCEEEEEEECTTCHHHHHHHTTHHHHHHT------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHhC------CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCC
Confidence            46899999999999999999999988652      13332221                                     


Q ss_pred             ---C----ccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhh
Q 017971          103 ---A----DKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       103 ---~----~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~  148 (363)
                         |    +++..+++++||.++||+ ++.+|.  .+.|..+.+.|.+++.+.
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~--~~~G~~~~~~l~~~l~~~  209 (216)
T 1eej_A          160 PASCDVDIADHYALGVQLGVSGTPAV-VLSNGT--LVPGYQPPKEMKEFLDEH  209 (216)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEE-ECTTSC--EEESCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCccCEE-EEcCCe--EecCCCCHHHHHHHHHHh
Confidence               2    234668889999999999 566774  457888999999988765

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.71  E-value=6.9e-08  Score=79.23  Aligned_cols=83  Identities=14%  Similarity=0.178  Sum_probs=64.3

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC-----------------------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA-----------------------------------  103 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-----------------------------------  103 (363)
                      +.++.++.|+++||++|+++.|.+.++.+...    ++.+...+.                                   
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~   96 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP----NVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSG   96 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----TEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCC----CEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCC
Confidence            34689999999999999999999999887542    255554442                                   


Q ss_pred             ----------------------------------ccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhc
Q 017971          104 ----------------------------------DKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       104 ----------------------------------~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~  149 (363)
                                                        .++..+++++||.++||+++  +|+  .+.|..+.+.+.+.+.+.+
T Consensus        97 ~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~--~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A           97 KANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA--LVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             CCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE--EECSCCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE--EeeCCCCHHHHHHHHHHHH
Confidence                                              23445778899999999987  675  5679999999999887654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.70  E-value=1.1e-07  Score=77.68  Aligned_cols=112  Identities=16%  Similarity=0.188  Sum_probs=78.7

Q ss_pred             CCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCCh-hhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---ch
Q 017971           32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCG-HCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---YS  107 (363)
Q Consensus        32 ~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~-~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---~~  107 (363)
                      ..|+....+.++..+.+++-       .+++++|.||++||+ +|+...|.+.++.+.+.+.+.++.+..|+++.   .+
T Consensus        12 ~~p~f~l~~~~G~~~~l~~~-------~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~   84 (174)
T 1xzo_A           12 EVEPFTFQNQDGKNVSLESL-------KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKP   84 (174)
T ss_dssp             ECCCCEEECTTSCEEETGGG-------TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCH
T ss_pred             ccCCcEEEcCCCCEEehhhc-------CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCH
Confidence            34454555556666666542       568999999999999 99999999999999988765458888888762   11


Q ss_pred             -------------------------hhhhh----------------CCcCcCCEEEEE-eCCEEEe-ecCCC--CHHHHH
Q 017971          108 -------------------------RLASK----------------QEIDAFPTLKIF-MHGIPTE-YYGPR--KAELLV  142 (363)
Q Consensus       108 -------------------------~l~~~----------------~~i~~~Pt~~~~-~~g~~~~-y~g~~--~~~~i~  142 (363)
                                               ++.+.                +++.+.|+.+++ ++|+.+. +.|..  +.++|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~  164 (174)
T 1xzo_A           85 KQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDII  164 (174)
T ss_dssp             HHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHH
T ss_pred             HHHHHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHH
Confidence                                     11112                235678987777 4677654 67765  578899


Q ss_pred             HHHHhhcC
Q 017971          143 RYLKKFVA  150 (363)
Q Consensus       143 ~~i~~~~~  150 (363)
                      +.+.+.+.
T Consensus       165 ~~l~~ll~  172 (174)
T 1xzo_A          165 SDVKSAST  172 (174)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            98887653

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.67  E-value=4.4e-08  Score=83.07  Aligned_cols=81  Identities=21%  Similarity=0.215  Sum_probs=61.2

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEE--Ee----------------------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK--VD----------------------------------  102 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~--vd----------------------------------  102 (363)
                      +.++.++.|+++||++|++++|.++++.+.    +  +.+..  +.                                  
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~----~--v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~  158 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL----G--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP  158 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC----C--cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence            346899999999999999999999987541    1  33322  21                                  


Q ss_pred             ----C----ccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhh
Q 017971          103 ----A----DKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       103 ----~----~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~  148 (363)
                          |    +++.++++++||+++||+++ .+|+  .+.|..+.+.|.+++.+.
T Consensus       159 ~~~~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~--~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          159 KEVKTPNIVKKHYELGIQFGVRGTPSIVT-STGE--LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             SSCCCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC--CCCSCCCHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE--EecCCCCHHHHHHHHHhc
Confidence                1    13456788999999999988 6775  567888999999988653

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.66  E-value=1.4e-07  Score=79.27  Aligned_cols=110  Identities=11%  Similarity=0.028  Sum_probs=73.9

Q ss_pred             ccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChh-hhhHHHHHHHHHHHhhcC-CCCeEEEEEeCcc------
Q 017971           34 EEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGH-CKRLAPQLDEAAPILAKL-KEPIVIAKVDADK------  105 (363)
Q Consensus        34 ~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~-C~~~~~~~~~~a~~~~~~-~~~v~~~~vd~~~------  105 (363)
                      |+....+.++..+.+.+-       .+++++|.||++||++ |+...|.+.++.+.+... +.++.+..|+++.      
T Consensus        22 p~f~l~d~~G~~v~l~~~-------~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~   94 (200)
T 2b7k_A           22 GPFHLEDMYGNEFTEKNL-------LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPA   94 (200)
T ss_dssp             CCCEEEETTSCEEEGGGG-------TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHH
T ss_pred             CCEEEEcCCCCEEeHHHc-------CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHH
Confidence            444444555555555431       4689999999999997 999999999988887643 3347777777762      


Q ss_pred             ----------------------chhhhhhCCcC-cCC---------------EEEEE-eCCEEEe-ecCCCCHHHHHHHH
Q 017971          106 ----------------------YSRLASKQEID-AFP---------------TLKIF-MHGIPTE-YYGPRKAELLVRYL  145 (363)
Q Consensus       106 ----------------------~~~l~~~~~i~-~~P---------------t~~~~-~~g~~~~-y~g~~~~~~i~~~i  145 (363)
                                            ...+++.|++. +.|               +.+++ ++|+.+. +.|..+.+.+.+.+
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i  174 (200)
T 2b7k_A           95 VLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKI  174 (200)
T ss_dssp             HHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHH
T ss_pred             HHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHH
Confidence                                  13467888887 444               55555 5677654 67777777777776


Q ss_pred             HhhcC
Q 017971          146 KKFVA  150 (363)
Q Consensus       146 ~~~~~  150 (363)
                      .+.+.
T Consensus       175 ~~~l~  179 (200)
T 2b7k_A          175 VEHVK  179 (200)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66553

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.66  E-value=1.4e-07  Score=79.45  Aligned_cols=89  Identities=13%  Similarity=0.160  Sum_probs=69.7

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      .+++++|.|| ++||++|+...|.+.++.+++++.  ++.+..|+++.                            +.++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~--~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  112 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI--GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCI  112 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHH
Confidence            4589999999 999999999999999999988753  38888888753                            3468


Q ss_pred             hhhCCcC------cCCEEEEEe-CCEEEe-ecC----CCCHHHHHHHHHhhc
Q 017971          110 ASKQEID------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKKFV  149 (363)
Q Consensus       110 ~~~~~i~------~~Pt~~~~~-~g~~~~-y~g----~~~~~~i~~~i~~~~  149 (363)
                      ++.|++.      ++|+.+++. +|+... +.|    .++.+++.+.+....
T Consensus       113 ~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          113 MKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            8889999      999999995 565443 333    356788888776553

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.62  E-value=4.2e-08  Score=75.49  Aligned_cols=100  Identities=17%  Similarity=0.233  Sum_probs=79.9

Q ss_pred             HhhcCCCcee--cCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCC
Q 017971          146 KKFVAPDVSI--LNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKV  218 (363)
Q Consensus       146 ~~~~~~~v~~--i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (363)
                      .++.+|+...  |++..++++|+..++   +++|||+++.     +.+..+|..+ +.+.|+.  +.++++++.++++ .
T Consensus        14 ~kq~gP~~~~~~i~s~~e~e~fi~~~~---v~VVGfF~~~~~~~~~~F~~~A~~~-~d~~F~~--t~~~~v~~~~~v~-~   86 (124)
T 2l4c_A           14 SDGPGAAQEPTWLTDVPAAMEFIAATE---VAVIGFFQDLEIPAVPILHSMVQKF-PGVSFGI--STDSEVLTHYNIT-G   86 (124)
T ss_dssp             CCCSCCSCCCEECCSHHHHHHHHHTSS---EEEEEECSCTTSTHHHHHHHHHHHC-TTSEEEE--ECCHHHHHHTTCC-S
T ss_pred             HhccCCCCcceEcCCHHHHHHHHhcCC---CEEEEEECCCCChhHHHHHHHHHhC-CCceEEE--EChHHHHHHcCCC-C
Confidence            3566777755  999999999997655   6899998652     3588889888 6666654  4568899999998 6


Q ss_pred             CeEEEEcCCCCCcccccC----CCCHHHHHHHHHhhcC
Q 017971          219 PALVALQPSYNEHNIFYG----PFDEEFLEEFIKQNFL  252 (363)
Q Consensus       219 p~iv~~~~~~~~~~~~~g----~~~~~~l~~fi~~~~~  252 (363)
                      |++++|++.++....|.|    .++.++|.+||..+++
T Consensus        87 ~~vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n~l  124 (124)
T 2l4c_A           87 NTICLFRLVDNEQLNLEDEDIESIDATKLSRFIEINSL  124 (124)
T ss_dssp             SCEEEEETTTTEEEEECHHHHTTCCHHHHHHHHHHHCC
T ss_pred             CeEEEEEcCCCCceeecCcccCCCCHHHHHHHHHHhcC
Confidence            999999987667778886    7899999999998763

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.60  E-value=1.6e-06  Score=83.34  Aligned_cols=192  Identities=13%  Similarity=0.092  Sum_probs=121.1

Q ss_pred             CceecCChHHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHHhhh---hhHHHHh-h--hcchhhhhhcCCCC
Q 017971          152 DVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKK---KAWFAVA-K--DFSEDTMVLYDFDK  217 (363)
Q Consensus       152 ~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~---~~~~~~~-~--~~~~~~~~~~~~~~  217 (363)
                      .+..++. .++++.+....  .+++|.|+..+        +.+.+++..+.+   ...++.+ .  +...+++..|++.+
T Consensus        13 ~V~~Lt~-~~f~~~v~~~~--k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~   89 (519)
T 3t58_A           13 PLTLLDA-DSVRPTVLGSS--SAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG   89 (519)
T ss_dssp             SSEEECT-TTHHHHHSSCS--SEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCS
T ss_pred             CcEECCh-HHHHHHHHhCC--CeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcc
Confidence            5677766 45887775543  26888887653        347777777766   3333322 1  23678899999999


Q ss_pred             CCeEEEEcCCC---CCcccccCCCCHHHHHHHHHhhc----------CCCcccCChhhHHhhhcCC--CcEEEEEEeCCC
Q 017971          218 VPALVALQPSY---NEHNIFYGPFDEEFLEEFIKQNF----------LPLSVPINQDTLNLLKDDK--RKIVLAIVEDET  282 (363)
Q Consensus       218 ~p~iv~~~~~~---~~~~~~~g~~~~~~l~~fi~~~~----------~p~~~~lt~~~~~~l~~~~--~~~~i~~~~~~~  282 (363)
                      +|++++|.++.   .....+.|..+.+.|.+||.+..          .|.+..++..++..+....  .+++++|. +.+
T Consensus        90 ~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~l~~~~~~~vallF~-~~~  168 (519)
T 3t58_A           90 FPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFE-RED  168 (519)
T ss_dssp             BSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTGGGSCCCSEEEEEEE-CTT
T ss_pred             cCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHHhccCCCCeEEEEec-CCc
Confidence            99999998632   23345567789999999987752          1234456666776655332  34555444 333


Q ss_pred             hhhHHHHHHHHHHHHHhC---CCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhh
Q 017971          283 EEKSQKLVTTLKAAASAN---RELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTL  359 (363)
Q Consensus       283 ~~~~~~~~~~l~~~a~~~---~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~  359 (363)
                      ..       ..+.++..+   +++.+..++..+ ..+++.||+   ..+|++++++.+|+........-   -+.|+.+.
T Consensus       169 s~-------~~~~~~ldl~~~~~v~v~~v~~~~-~~l~~kfgV---~~~Pslvl~~~nGk~~~~~v~~~---~r~~~~~~  234 (519)
T 3t58_A          169 SY-------LGREVTLDLSQYHAVAVRRVLNTE-SDLVNKFGV---TDFPSCYLLLRNGSVSRVPVLVE---SRSFYTSY  234 (519)
T ss_dssp             CC-------HHHHHHHHTTTCTTEEEEEEETTC-HHHHHHHTC---CCSSEEEEEETTSCEEECCCSSC---SHHHHHHH
T ss_pred             hH-------HHHHHHHHhhccCCeeEEEecCch-HHHHHHcCC---CCCCeEEEEeCCCceeecccccc---cHHHHHHH
Confidence            22       222333333   347777776653 679999999   57899999999997655433322   23555555


Q ss_pred             hc
Q 017971          360 LQ  361 (363)
Q Consensus       360 ~~  361 (363)
                      |+
T Consensus       235 l~  236 (519)
T 3t58_A          235 LR  236 (519)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.60  E-value=2.8e-07  Score=78.63  Aligned_cols=89  Identities=18%  Similarity=0.247  Sum_probs=69.8

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      .+++++|.|| ++||+.|+...|.+.++.+++++.  ++.+..|+++.                            +.++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~--~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i  132 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV--NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI  132 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHH
Confidence            4589999999 999999999999999999998754  38888887753                            3468


Q ss_pred             hhhCCcC------cCCEEEEEe-CCEEEe-ecC----CCCHHHHHHHHHhhc
Q 017971          110 ASKQEID------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKKFV  149 (363)
Q Consensus       110 ~~~~~i~------~~Pt~~~~~-~g~~~~-y~g----~~~~~~i~~~i~~~~  149 (363)
                      ++.|++.      .+|+++++. +|+... +.|    .++.+++.+.+....
T Consensus       133 ~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          133 SRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            8899999      999999994 666443 333    356788887776654

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.59  E-value=2.1e-07  Score=77.58  Aligned_cols=88  Identities=16%  Similarity=0.293  Sum_probs=68.2

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      ++++++|.|| ++||++|+...|.+.++.+++++.  ++.+..|+++.                            +.++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~  107 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER--NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSI  107 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHH
Confidence            4589999999 999999999999999999988754  37788887753                            3468


Q ss_pred             hhhCCcC-----cCCEEEEE-eCCEEEe-ecCC----CCHHHHHHHHHhh
Q 017971          110 ASKQEID-----AFPTLKIF-MHGIPTE-YYGP----RKAELLVRYLKKF  148 (363)
Q Consensus       110 ~~~~~i~-----~~Pt~~~~-~~g~~~~-y~g~----~~~~~i~~~i~~~  148 (363)
                      ++.|++.     .+|+++++ ++|+... +.|.    ++.+++.+.+...
T Consensus       108 ~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  157 (192)
T 2h01_A          108 ARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  157 (192)
T ss_dssp             HHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence            8899999     89999999 4676543 4442    4567777776544

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.58  E-value=4.7e-07  Score=73.48  Aligned_cols=106  Identities=12%  Similarity=0.102  Sum_probs=72.0

Q ss_pred             CCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCC-ChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-----
Q 017971           32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPW-CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----  105 (363)
Q Consensus        32 ~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~-C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----  105 (363)
                      ..|+....+.++..+.+.+     .  .+++++|.||++| |++|+...|.+.++.+++ .   ++.+..|+.+.     
T Consensus        23 ~~p~f~l~~~~G~~~~l~~-----~--~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~---~~~vv~is~d~~~~~~   91 (167)
T 2jsy_A           23 QAPDFTVLTNSLEEKSLAD-----M--KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G---DVNVYTISADLPFAQA   91 (167)
T ss_dssp             CCCCCEEEBTTCCEEEHHH-----H--TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S---SCEEEEEECSSGGGTS
T ss_pred             cCCceEEECCCCCEeeHHH-----h--CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-C---CCEEEEEECCCHHHHH
Confidence            3444444444444444432     1  4679999999999 999999999999999888 2   37777777652     


Q ss_pred             ------------------chhhhhhCCcCc------CCEEEEEe-CCEEEe-ecCC-----CCHHHHHHHHHhh
Q 017971          106 ------------------YSRLASKQEIDA------FPTLKIFM-HGIPTE-YYGP-----RKAELLVRYLKKF  148 (363)
Q Consensus       106 ------------------~~~l~~~~~i~~------~Pt~~~~~-~g~~~~-y~g~-----~~~~~i~~~i~~~  148 (363)
                                        +.++++.|++..      .|+.+++. +|+... +.|.     .+.+++.+.+.+.
T Consensus        92 ~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l  165 (167)
T 2jsy_A           92 RWCGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL  165 (167)
T ss_dssp             CCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred             HHHHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence                              345777888876      49988885 566543 4432     2447777777654

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.58  E-value=5.3e-08  Score=68.94  Aligned_cols=71  Identities=10%  Similarity=0.209  Sum_probs=52.4

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh---hCCcCcCCEEEEEeCCEEEeecCCCCHHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS---KQEIDAFPTLKIFMHGIPTEYYGPRKAEL  140 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~  140 (363)
                      ++.|+++||++|++..+.+++.         .+.+..+|+++++++.+   ++++.++|++  +.+|+.+   |..+.+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~~---~g~~~~~   68 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR---------GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLSW---SGFRPDM   68 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEEE---ESCCHHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC---------CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEEE---ecCCHHH
Confidence            6789999999999999888752         16677899988766554   5899999998  3477643   3355667


Q ss_pred             HHHHHHhh
Q 017971          141 LVRYLKKF  148 (363)
Q Consensus       141 i~~~i~~~  148 (363)
                      |.+++.+.
T Consensus        69 l~~~l~~~   76 (81)
T 1h75_A           69 INRLHPAP   76 (81)
T ss_dssp             HGGGSCCC
T ss_pred             HHHHHhcc
Confidence            76665443

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.58  E-value=5.3e-07  Score=72.83  Aligned_cols=111  Identities=14%  Similarity=0.102  Sum_probs=78.7

Q ss_pred             CCCCCcccc--ccCCCCCeEEcChhhHHHhHcCCCeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-
Q 017971           29 RGLSSEEET--KFKIDGKVIELDESNFDSAISSFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-  104 (363)
Q Consensus        29 ~~~~~~~~~--~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-  104 (363)
                      .|...|+..  ..+.++..+.+++-       .+++++|.||+ +||++|....|.+.++.+++++.+  +.+..|.++ 
T Consensus         9 ~G~~~P~f~~~l~~~~G~~~~l~~~-------~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~   79 (163)
T 3gkn_A            9 LELPAATFDLPLSLSGGTQTTLRAH-------AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG--AKILGVSRDS   79 (163)
T ss_dssp             CCCCGGGGGCCEECSTTCEECSGGG-------TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred             cCCcCCCccccccCCCCCEEEHHHh-------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence            355667766  66666666655432       45799999998 999999999999999999987654  666666664 


Q ss_pred             --------------------cchhhhhhCCcCc------------CCEEEEEe-CCEEEe-ecCC---CCHHHHHHHHHh
Q 017971          105 --------------------KYSRLASKQEIDA------------FPTLKIFM-HGIPTE-YYGP---RKAELLVRYLKK  147 (363)
Q Consensus       105 --------------------~~~~l~~~~~i~~------------~Pt~~~~~-~g~~~~-y~g~---~~~~~i~~~i~~  147 (363)
                                          .+.++++.|++..            .|+.+++. +|+... +.|.   ...+++.+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~  159 (163)
T 3gkn_A           80 VKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKA  159 (163)
T ss_dssp             HHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHH
Confidence                                2346778888877            99999995 565542 4442   334666666655


Q ss_pred             h
Q 017971          148 F  148 (363)
Q Consensus       148 ~  148 (363)
                      .
T Consensus       160 l  160 (163)
T 3gkn_A          160 H  160 (163)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.51  E-value=6.2e-07  Score=76.60  Aligned_cols=87  Identities=16%  Similarity=0.223  Sum_probs=66.3

Q ss_pred             CCCeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      .+++++|.||+ +||++|+...|.+.++.+++++.+  +.+..|+++.                            +..+
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~--v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~  145 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN--CQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEI  145 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHH
Confidence            56899999996 999999999999999999987543  8888887763                            2357


Q ss_pred             hhhCCcC------cCCEEEEEe-CCEEEe-ecCC----CCHHHHHHHHHh
Q 017971          110 ASKQEID------AFPTLKIFM-HGIPTE-YYGP----RKAELLVRYLKK  147 (363)
Q Consensus       110 ~~~~~i~------~~Pt~~~~~-~g~~~~-y~g~----~~~~~i~~~i~~  147 (363)
                      ++.|++.      .+|+.+++. +|+.+. +.|.    ...+++++.+..
T Consensus       146 ~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          146 SKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            7889998      899999995 566543 4443    345666666644

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.50  E-value=7.8e-07  Score=71.59  Aligned_cols=100  Identities=12%  Similarity=0.071  Sum_probs=67.5

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----  104 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----  104 (363)
                      |...|+....+.++..+.+.     +...++++++|.|| +.||+.|....|.+.++.+++++.+   .+..|.++    
T Consensus        10 G~~~P~f~l~~~~G~~v~l~-----~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~---~vv~is~d~~~~   81 (159)
T 2a4v_A           10 GDPIPDLSLLNEDNDSISLK-----KITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA---AVFGLSADSVTS   81 (159)
T ss_dssp             TCBCCSCEEECTTSCEEEHH-----HHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC---EEEEEESCCHHH
T ss_pred             CCCCCCeEEECCCCCEEeHH-----HHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC---cEEEEeCCCHHH
Confidence            44455555555555544443     22233347888987 8999999999999999999987654   44444442    


Q ss_pred             -----------------cchhhhhhCCcCcCC-------EEEEEeCCEEEe-ecCCCCH
Q 017971          105 -----------------KYSRLASKQEIDAFP-------TLKIFMHGIPTE-YYGPRKA  138 (363)
Q Consensus       105 -----------------~~~~l~~~~~i~~~P-------t~~~~~~g~~~~-y~g~~~~  138 (363)
                                       .+..+++.|++...|       ++++ ++|+... +.|....
T Consensus        82 ~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~~~~  139 (159)
T 2a4v_A           82 QKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISPE  139 (159)
T ss_dssp             HHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCHH
T ss_pred             HHHHHHHhCCCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEccCCcc
Confidence                             344678889999999       6666 8888664 6675443

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.50  E-value=3.6e-07  Score=63.34  Aligned_cols=68  Identities=16%  Similarity=0.215  Sum_probs=52.6

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh---hCCcCcCCEEEEEeCCEEEeecCCCCHHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS---KQEIDAFPTLKIFMHGIPTEYYGPRKAEL  140 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~  140 (363)
                      ++.|+++||++|++..+.+++.         .+.+..+|.+.++++.+   ++++.++|++..  +|+.+   |..+.+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~---------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~~---~g~~~~~   68 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA---------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEHW---SGFRPER   68 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT---------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEEE---ESCCHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc---------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeEE---cCCCHHH
Confidence            5779999999999999888753         16677889988876665   899999999974  77542   3356777


Q ss_pred             HHHHH
Q 017971          141 LVRYL  145 (363)
Q Consensus       141 i~~~i  145 (363)
                      |.+++
T Consensus        69 l~~~l   73 (75)
T 1r7h_A           69 IKQLQ   73 (75)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77776

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.49  E-value=6.5e-07  Score=77.44  Aligned_cols=85  Identities=13%  Similarity=0.175  Sum_probs=63.1

Q ss_pred             CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC-------------------------------------
Q 017971           61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA-------------------------------------  103 (363)
Q Consensus        61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-------------------------------------  103 (363)
                      +..++.|+++||++|+++.|.+.++.+.  +   +|.+..++.                                     
T Consensus        98 k~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g---~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~  172 (241)
T 1v58_A           98 PVIVYVFADPFCPYCKQFWQQARPWVDS--G---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLN  172 (241)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHT--T---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCC
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHHhC--C---cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Confidence            5689999999999999999999886653  1   355544332                                     


Q ss_pred             -------------ccchhhhhhCCcCcCCEEEEEe-CCEEEeecCCCCHHHHHHHHHhhcC
Q 017971          104 -------------DKYSRLASKQEIDAFPTLKIFM-HGIPTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       104 -------------~~~~~l~~~~~i~~~Pt~~~~~-~g~~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                                   +++.++++++||.++|++++.. +|......|..+.+.|.+++.+...
T Consensus       173 ~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~~~~~G~~~~~~L~~~l~~~~~  233 (241)
T 1v58_A          173 VPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIMGNKLQ  233 (241)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHTTC---
T ss_pred             ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHHHHHHH
Confidence                         1234567889999999999987 4765457899999999998876543

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.46  E-value=3.4e-06  Score=71.47  Aligned_cols=63  Identities=14%  Similarity=0.220  Sum_probs=48.6

Q ss_pred             CCccccccCCC-CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           32 SSEEETKFKID-GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        32 ~~~~~~~~~~~-~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      +.++....+.+ +..+.|++-       ++++++|.|||+||+.|+ ..|.++++.+++.+.+  +.+..|.|+
T Consensus        34 ~~pdF~l~d~~~G~~v~Lsd~-------~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g--~~Vlgvs~d   97 (215)
T 2i3y_A           34 TIYDYEAIALNKNEYVSFKQY-------VGKHILFVNVATYCGLTA-QYPELNALQEELKPYG--LVVLGFPCN   97 (215)
T ss_dssp             CGGGCEEEBSSSSCEEEGGGG-------TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT--EEEEEEECC
T ss_pred             CcCCcEeeeCCCCCEEcHHHh-------CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC--eEEEEEEcc
Confidence            44555555555 666666542       568999999999999998 8999999999987643  888888875

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.46  E-value=7.4e-07  Score=73.05  Aligned_cols=88  Identities=15%  Similarity=0.116  Sum_probs=62.3

Q ss_pred             CCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCC-ChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc------
Q 017971           32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPW-CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD------  104 (363)
Q Consensus        32 ~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~-C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~------  104 (363)
                      ..|+....+.++..+.+.+-       ++++++|.||++| |++|+...|.+.++.++ +    ++.+..|+.+      
T Consensus        23 ~~P~f~l~~~~G~~v~l~~~-------~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~----~v~vv~Is~D~~~~~~   90 (175)
T 1xvq_A           23 PAPAFTLTGGDLGVISSDQF-------RGKSVLLNIFPSVDTPVCATSVRTFDERAAA-S----GATVLCVSKDLPFAQK   90 (175)
T ss_dssp             BCCCCEEECTTSCEEEGGGG-------TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-T----TCEEEEEESSCHHHHT
T ss_pred             cCCCeEEECCCCCEEeHHHc-------CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-c----CCEEEEEECCCHHHHH
Confidence            34444444444545444331       4679999999999 99999999999999876 2    3777777765      


Q ss_pred             --------c--------chhhhhhCCcCcC---------CEEEEEe-CCEEEe
Q 017971          105 --------K--------YSRLASKQEIDAF---------PTLKIFM-HGIPTE  131 (363)
Q Consensus       105 --------~--------~~~l~~~~~i~~~---------Pt~~~~~-~g~~~~  131 (363)
                              .        +..+++.|++...         |+.+++. +|+...
T Consensus        91 ~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~  143 (175)
T 1xvq_A           91 RFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAY  143 (175)
T ss_dssp             TCC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEE
T ss_pred             HHHHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEE
Confidence                    2        3568888999877         8888775 676543

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.45  E-value=1.6e-06  Score=64.61  Aligned_cols=106  Identities=9%  Similarity=0.135  Sum_probs=87.4

Q ss_pred             CCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          252 LPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       252 ~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      .+.+..+|.+++......++++++.|+. ......+.+...+.++++.+++ +.|+.+|.+..+.+++.+++   ...|+
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i---~~~Pt   78 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIRNNKLVLVDCWA-EWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSV---LNIPT   78 (109)
T ss_dssp             CCCCEECCTTTHHHHHHHSSEEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTC---CSSSE
T ss_pred             CCeEEEecHHHHHHHHhcCCeEEEEEEC-CCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCc---ccCCE
Confidence            3567788999999877777788777764 4677788899999999999986 99999999999999999999   67999


Q ss_pred             EEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          331 MVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       331 ~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++..........+....+.+..++..+|+
T Consensus        79 ~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  109 (109)
T 3tco_A           79 TLIFVNGQLVDSLVGAVDEDTLESTVNKYLK  109 (109)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred             EEEEcCCcEEEeeeccCCHHHHHHHHHHHhC
Confidence            9999433356667888888999999988763

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.43  E-value=3.9e-07  Score=67.87  Aligned_cols=70  Identities=19%  Similarity=0.214  Sum_probs=50.3

Q ss_pred             hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-------hhhhhhCCcCcCCEEEE
Q 017971           51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------SRLASKQEIDAFPTLKI  123 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------~~l~~~~~i~~~Pt~~~  123 (363)
                      +.+++.++.++  ++.|+++||++|++..+.+++.....    +.  +..+|++.+       ..+.+.+++.++|++  
T Consensus         3 ~~~~~~i~~~~--v~~f~~~~C~~C~~~~~~L~~~~~~~----~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--   72 (105)
T 1kte_A            3 AFVNSKIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKE----GL--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--   72 (105)
T ss_dssp             HHHHHHCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCT----TS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--
T ss_pred             hHHHhhcccCC--EEEEEcCCCHhHHHHHHHHHHcCCCC----Cc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--
Confidence            45667776543  67799999999999999988754221    11  555677665       357888999999997  


Q ss_pred             EeCCEEE
Q 017971          124 FMHGIPT  130 (363)
Q Consensus       124 ~~~g~~~  130 (363)
                      |.+|+.+
T Consensus        73 ~~~g~~i   79 (105)
T 1kte_A           73 FIGKECI   79 (105)
T ss_dssp             EETTEEE
T ss_pred             EECCEEE
Confidence            4577654

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.43  E-value=2.5e-06  Score=69.55  Aligned_cols=115  Identities=14%  Similarity=0.106  Sum_probs=79.8

Q ss_pred             CCCCc-cccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCCh-hhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--
Q 017971           30 GLSSE-EETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCG-HCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--  105 (363)
Q Consensus        30 ~~~~~-~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~-~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--  105 (363)
                      |...| +....+.++..+.+.+-       .+++++|.||++||+ .|....|.+.++.+.+...+.++.+..|.++.  
T Consensus         4 G~~~P~~f~l~d~~G~~v~l~~~-------~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d   76 (170)
T 3me7_A            4 GTYVPGDITLVDSYGNEFQLKNL-------KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKD   76 (170)
T ss_dssp             TCBCCTTCEEEETTCCEEEGGGG-------TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTC
T ss_pred             CCcCCCCeEEEcCCcCEEchHHh-------CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCC
Confidence            34455 55555566666666542       468999999999997 69999999999999886544457777776541  


Q ss_pred             -----------------------------chhhhhhCC---------cCcCCEEEEEe-CCEEEe-ecCC-CCHHHHHHH
Q 017971          106 -----------------------------YSRLASKQE---------IDAFPTLKIFM-HGIPTE-YYGP-RKAELLVRY  144 (363)
Q Consensus       106 -----------------------------~~~l~~~~~---------i~~~Pt~~~~~-~g~~~~-y~g~-~~~~~i~~~  144 (363)
                                                   ...+++.||         +...|+++++. +|+... |.|. .+.++|.+-
T Consensus        77 ~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~  156 (170)
T 3me7_A           77 TLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNA  156 (170)
T ss_dssp             CHHHHHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHH
Confidence                                         123555555         34567888885 566553 6774 678899888


Q ss_pred             HHhhcCC
Q 017971          145 LKKFVAP  151 (363)
Q Consensus       145 i~~~~~~  151 (363)
                      +.+....
T Consensus       157 l~~~~~~  163 (170)
T 3me7_A          157 LRLARGE  163 (170)
T ss_dssp             HHHHTTC
T ss_pred             HHHhhcc
Confidence            8887654

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.43  E-value=9.7e-07  Score=74.85  Aligned_cols=88  Identities=15%  Similarity=0.269  Sum_probs=67.7

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      ++++++|.|| ++||+.|+...|.+.++++++++.  ++.+..|+++.                            +.++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~  128 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER--NVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSI  128 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHH
Confidence            4579999999 999999999999999999988754  37777777653                            3568


Q ss_pred             hhhCCcC-----cCCEEEEEe-CCEEEe-ecC----CCCHHHHHHHHHhh
Q 017971          110 ASKQEID-----AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKKF  148 (363)
Q Consensus       110 ~~~~~i~-----~~Pt~~~~~-~g~~~~-y~g----~~~~~~i~~~i~~~  148 (363)
                      ++.|++.     .+|+.+++. +|+... +.|    .++.+++.+.+...
T Consensus       129 ~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l  178 (213)
T 2i81_A          129 SKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI  178 (213)
T ss_dssp             HHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            8899999     899999985 565442 333    24578888777654

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.42  E-value=2.7e-06  Score=62.97  Aligned_cols=102  Identities=10%  Similarity=0.089  Sum_probs=84.2

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      .+.+++.+++.... .++++++.|+ .......+.+...+.++++.+++ +.|+.+|.+..+.+++.+++   ...|+++
T Consensus         4 ~v~~l~~~~~~~~~-~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~   78 (106)
T 3die_A            4 AIVKVTDADFDSKV-ESGVQLVDFW-ATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEV---MSIPTLI   78 (106)
T ss_dssp             CCEECCTTTHHHHS-CSSEEEEEEE-CSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---CSBSEEE
T ss_pred             ceEECCHHHHHHHh-cCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCC---cccCEEE
Confidence            45678888888876 6677777766 45777888999999999999988 99999999999999999999   6799999


Q ss_pred             EEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          333 VWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       333 i~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +++..+......+....+.+..++..+|
T Consensus        79 ~~~~G~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           79 VFKDGQPVDKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             EEeCCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            9974445667778888889999887765

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=98.42  E-value=2.5e-06  Score=66.93  Aligned_cols=105  Identities=7%  Similarity=0.056  Sum_probs=86.2

Q ss_pred             CCcccCChhhHHhhhc------------CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhh
Q 017971          253 PLSVPINQDTLNLLKD------------DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADT  319 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~------------~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~  319 (363)
                      +.+..++..++.....            .++++++.|+. ......+.+...+.++++.+++ +.|+.+|.+..+.+++.
T Consensus        22 ~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  100 (141)
T 3hxs_A           22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYA-DWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARD  100 (141)
T ss_dssp             -CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEEC-TTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH
T ss_pred             CCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHH
Confidence            3456677777765433            35777777764 4677778889999999999986 99999999999999999


Q ss_pred             cCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          320 FEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       320 ~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ||+   ...|++++++++|+.....+....+.+..|+..+|.
T Consensus       101 ~~v---~~~Pt~~~~~~~g~~~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A          101 FGI---QSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             TTC---CSSSEEEEECSSSCCEEEESCCCHHHHHHHHHHTTC
T ss_pred             cCC---CCcCEEEEEeCCCCEEEEeCCCCHHHHHHHHHHHHc
Confidence            999   679999999999887788888899999999998875

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.40  E-value=2.7e-06  Score=62.96  Aligned_cols=102  Identities=8%  Similarity=0.145  Sum_probs=82.9

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      +.+++.+++......++++++.|+. ......+.+...+.++++.+++ +.|+.+|.++.+.+++.+|+   ...|++++
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~-~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v---~~~Pt~~~   77 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWA-AWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI---MSIPTLIL   77 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEEC-TTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTC---CSSSEEEE
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEEC-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCC---ccccEEEE
Confidence            3467778888777777888877764 4677788889999999999987 99999999999999999999   67899999


Q ss_pred             EeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          334 WDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       334 ~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      + .+|+ .....|....+.+..++..+|+
T Consensus        78 ~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  105 (105)
T 1nsw_A           78 F-KGGRPVKQLIGYQPKEQLEAQLADVLQ  105 (105)
T ss_dssp             E-ETTEEEEEEESCCCHHHHHHHTTTTTC
T ss_pred             E-eCCeEEEEEecCCCHHHHHHHHHHHhC
Confidence            9 5554 5556777777889999888775

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.39  E-value=3.7e-06  Score=62.84  Aligned_cols=103  Identities=16%  Similarity=0.236  Sum_probs=84.8

Q ss_pred             CcccCChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          254 LSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       254 ~~~~lt~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      .+.+++.+++.... ..++++++.|+. ......+.+...+.++++.+++ +.|+.+|.+..+.+++.+|+   ...|++
T Consensus         5 ~v~~l~~~~~~~~~~~~~~~vlv~f~a-~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~   80 (111)
T 3gnj_A            5 SLEKLDTNTFEQLIYDEGKACLVMFSR-KNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSL---KGVPQI   80 (111)
T ss_dssp             CSEECCHHHHHHHHTTSCCCEEEEEEC-SSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTC---CSSCEE
T ss_pred             cceecCHHHHHHHHHhcCCEEEEEEeC-CCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCC---CcCCEE
Confidence            35678888888866 667777777764 4677788899999999999987 99999999999999999999   679999


Q ss_pred             EEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          332 VVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       332 vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +++...+......+....+.+..|+...|
T Consensus        81 ~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  109 (111)
T 3gnj_A           81 LYFKDGEYKGKMAGDVEDDEVEQMIADVL  109 (111)
T ss_dssp             EEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence            99964445556777778889999988776

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.38  E-value=4.3e-06  Score=63.37  Aligned_cols=104  Identities=12%  Similarity=0.120  Sum_probs=82.5

Q ss_pred             CCCcccCChhhHHhhhc--CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          252 LPLSVPINQDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       252 ~p~~~~lt~~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      -+.....|.++++.+..  .++++++.|+.+ .....+.+...+.+++++++++.|+.+|.++.+.+++.+|+   ...|
T Consensus        11 ~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~P   86 (116)
T 3qfa_C           11 GSVKQIESKTAFQEALDAAGDKLVVVDFSAT-WCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEV---KSMP   86 (116)
T ss_dssp             -CCBCCCCHHHHHHHHHHHTTSCEEEEEECT-TCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTC---CSSS
T ss_pred             CcccCCCCHHHHHHHHHhcCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCC---cccc
Confidence            44566777888887665  677787777744 67778889999999999998899999999999999999999   6799


Q ss_pred             eEEEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          330 KMVVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       330 ~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++++++..+......+. ..+.+..++..+|
T Consensus        87 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           87 TFQFFKKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             EEEEESSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEEeCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence            99999443345556666 7888888887764

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.36  E-value=3.8e-07  Score=73.44  Aligned_cols=110  Identities=12%  Similarity=0.178  Sum_probs=70.0

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--  105 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--  105 (363)
                      .|..+|+....+.++..+.|++-       ++++++|.|| ++||+.|....|.+.++.+++++.+  +.+..|+.+.  
T Consensus         6 vG~~aPdF~l~~~~G~~~~l~d~-------~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~--~~~v~vs~d~~~   76 (157)
T 4g2e_A            6 IGELAPDFELPDTELKKVKLSAL-------KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN--AVVLGISVDPPF   76 (157)
T ss_dssp             TTSBCCCCEEEBTTSCEEEGGGG-------TTSCEEEEECSCTTCCC------CCSCGGGGGGGCS--SEEEEEESSCHH
T ss_pred             CCCCCcCeEeECCCCCEEeHHHH-------CCCeEEEEecCCCCCCccccchhhcccccccccccC--ceEeeecccchh
Confidence            35667777777778888877652       5688999999 9999999999999998888776543  6666666542  


Q ss_pred             -------------------chhhhhhCCcC-----------cCCEEEEEe-CCEEE-ee-----cCCCCHHHHHHHHHh
Q 017971          106 -------------------YSRLASKQEID-----------AFPTLKIFM-HGIPT-EY-----YGPRKAELLVRYLKK  147 (363)
Q Consensus       106 -------------------~~~l~~~~~i~-----------~~Pt~~~~~-~g~~~-~y-----~g~~~~~~i~~~i~~  147 (363)
                                         +.+++++||+.           ..|+.++.. +|+.. .+     .+..+.+++.+.+..
T Consensus        77 ~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~  155 (157)
T 4g2e_A           77 SNKAFKEHNKLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS  155 (157)
T ss_dssp             HHHHHHHHTTCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence                               23466677763           356777774 45432 12     244567777777654

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.35  E-value=2.8e-06  Score=64.81  Aligned_cols=104  Identities=10%  Similarity=0.088  Sum_probs=84.5

Q ss_pred             CcccCChhhHH-hhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          254 LSVPINQDTLN-LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       254 ~~~~lt~~~~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      .+.+++.+++. .+...++++++.|+. ......+.+...+.++++.+++ +.|+.+|++..+.+++.+++   ...|++
T Consensus         4 ~v~~l~~~~f~~~~~~~~~~~lv~f~a-~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~   79 (122)
T 3aps_A            4 ASIDLTPQTFNEKVLQGKTHWVVDFYA-PWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGI---KAYPSV   79 (122)
T ss_dssp             CSEECCHHHHHHHTTTCSSCEEEEEEC-TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred             chhcCCHHHHHHHHhcCCCeEEEEEEC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCC---CccceE
Confidence            35678888885 466667777777764 4677788889999999999885 99999999999999999999   679999


Q ss_pred             EEEeCCCCeeEEEEE----EeehhhhhHhhhhhc
Q 017971          332 VVWDGNENYLTVSIN----VLKTRVCFFMLTLLQ  361 (363)
Q Consensus       332 vi~~~~~~y~~~~~~----~~~~~~~~~~~~~~~  361 (363)
                      ++++.+|+.....+.    ...+.+..|+..+|+
T Consensus        80 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           80 KLYQYERAKKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEEEEGGGTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             EEEeCCCccceeeccccCcCCHHHHHHHHHHHHH
Confidence            999887765556665    678889999988875

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.34  E-value=3.8e-06  Score=61.74  Aligned_cols=101  Identities=12%  Similarity=0.157  Sum_probs=81.7

Q ss_pred             ccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEe
Q 017971          256 VPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWD  335 (363)
Q Consensus       256 ~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~  335 (363)
                      .+++.+++......++++++.|+ .......+.+...+.++++.++++.|+.+|.+..+.+++.+|+   ...|+++++ 
T Consensus         2 ~~l~~~~~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~~~-   76 (104)
T 2e0q_A            2 IHLDSKNFDSFLASHEIAVVDFW-AEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGV---MSLPTVIFF-   76 (104)
T ss_dssp             EECCTTTHHHHHHHSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSSCEEEEE-
T ss_pred             eecCHHHHHHHHhcCCcEEEEEE-CCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCc---cccCEEEEE-
Confidence            46778888876666677777766 4567778888999999999998899999999999999999999   578999999 


Q ss_pred             CCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          336 GNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       336 ~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      .+|+ .....+....+.+..|+..+|.
T Consensus        77 ~~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           77 KDGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            4554 4566777778889999888764

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.34  E-value=5.6e-06  Score=69.72  Aligned_cols=63  Identities=21%  Similarity=0.205  Sum_probs=49.3

Q ss_pred             CCccccccCCC-CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           32 SSEEETKFKID-GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        32 ~~~~~~~~~~~-~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      +.|+....+.+ +..+.|++-       ++++++|.||++||+.| ...|.+.++.+++++.+  +.+..|.|+
T Consensus        16 ~~pdF~l~d~~~G~~v~Ls~~-------kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g--~~vlgvs~d   79 (207)
T 2r37_A           16 TIYEYGALTIDGEEYIPFKQY-------AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG--LVILGFPCN   79 (207)
T ss_dssp             CGGGCEEEBTTSSCEEEGGGG-------TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT--EEEEEEECC
T ss_pred             ccCCeEeeeCCCCCEEcHHHh-------CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC--EEEEEEECc
Confidence            45665666666 677777543       56899999999999999 68899999999987653  888888875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.33  E-value=3.7e-06  Score=62.45  Aligned_cols=102  Identities=8%  Similarity=0.102  Sum_probs=82.9

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      +.+++.+++..+...+++.++.|+ .......+.+...+.++++.+++ +.|+.+|.+..+.+++.+|+   ...|++++
T Consensus         3 v~~l~~~~~~~~~~~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~~   78 (109)
T 2yzu_A            3 PIEVTDQNFDETLGQHPLVLVDFW-AEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRV---MSIPTVIL   78 (109)
T ss_dssp             CEECCTTTHHHHHHHCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTC---CSSSEEEE
T ss_pred             ceEccHhHHHHHhcCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCC---CcCCEEEE
Confidence            457788888877666777777766 45677788889999999999886 99999999999999999999   67899999


Q ss_pred             EeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          334 WDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       334 ~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      + .+|+ .....+....+.+..|+..+|+
T Consensus        79 ~-~~g~~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           79 F-KDGQPVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             E-ETTEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred             E-eCCcEeeeEeCCCCHHHHHHHHHHHhh
Confidence            9 4554 5567777788899999988875

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.32  E-value=6.2e-06  Score=64.36  Aligned_cols=104  Identities=9%  Similarity=0.050  Sum_probs=84.0

Q ss_pred             cccCChhhHHhhhc------------CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcC
Q 017971          255 SVPINQDTLNLLKD------------DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFE  321 (363)
Q Consensus       255 ~~~lt~~~~~~l~~------------~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~g  321 (363)
                      +.+++.+++.....            .++++++.|+. ......+.+...+.++++++++ +.|+.+|.+..+.+++.+|
T Consensus        11 v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a-~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~   89 (136)
T 2l5l_A           11 VIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYA-DWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFG   89 (136)
T ss_dssp             EEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEEC-TTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTT
T ss_pred             eEEecchHHHHHHHhhccCccceeecCCCEEEEEEEC-CcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcC
Confidence            45666667765433            35677777664 4677788889999999999986 9999999999899999999


Q ss_pred             CCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhcC
Q 017971          322 ANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQF  362 (363)
Q Consensus       322 i~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~~  362 (363)
                      +   ...|++++++.+|+.....+....+.+..|+...++-
T Consensus        90 v---~~~Pt~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           90 I---RSIPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             C---CSSCEEEEECSSSCCEEEESCCCHHHHHHHHHHHHTS
T ss_pred             C---CCCCEEEEECCCCcEEEEeCCCCHHHHHHHHHHHhhc
Confidence            9   6799999999888766677888889999999887753

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.32  E-value=7.4e-06  Score=60.41  Aligned_cols=102  Identities=8%  Similarity=0.121  Sum_probs=80.9

Q ss_pred             cccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          255 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       255 ~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      +..++.+++.. +...+++.++.|+. ......+.+...+.++++++++ +.|+.+|.++.+.+++.+|+   ...|+++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~   77 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWA-PWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNI---RSIPTVL   77 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---CSSSEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEEC-CCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCC---CcccEEE
Confidence            35677788877 44556777777764 5677788889999999999887 99999999998999999999   6789999


Q ss_pred             EEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          333 VWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       333 i~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +++.........|....+.+..++.++|
T Consensus        78 ~~~~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           78 FFKNGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             EEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEeCCeEEEEEecCCCHHHHHHHHHhhC
Confidence            9863334556778888888988888765

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.31  E-value=5.3e-06  Score=62.31  Aligned_cols=104  Identities=8%  Similarity=0.160  Sum_probs=82.7

Q ss_pred             CCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          252 LPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       252 ~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      .+....++.+++......++++++.|+ .......+.+...+.+++++++++.|+.+|.+..+.+++.+|+   ...|++
T Consensus         8 ~~~~~~~~~~~f~~~~~~~k~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v---~~~Pt~   83 (112)
T 1syr_A            8 HMVKIVTSQAEFDSIISQNELVIVDFF-AEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENI---TSMPTF   83 (112)
T ss_dssp             -CCEEECSHHHHHHHHHHCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTC---CSSSEE
T ss_pred             eeEEEECCHHHHHHHHccCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCC---CcccEE
Confidence            344567788888887777777777776 4467788889999999999998899999999998999999999   678999


Q ss_pred             EEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          332 VVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       332 vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++++.........+. ..+.+..++..+|
T Consensus        84 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           84 KVYKNGSSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEEETTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred             EEEECCcEEEEEeCC-CHHHHHHHHHHhh
Confidence            988633344556666 7888999888776

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.30  E-value=7e-07  Score=67.68  Aligned_cols=67  Identities=10%  Similarity=0.156  Sum_probs=50.0

Q ss_pred             hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeE---EEEEeCccch-------hhhhhCCcCcCCE
Q 017971           51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV---IAKVDADKYS-------RLASKQEIDAFPT  120 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~---~~~vd~~~~~-------~l~~~~~i~~~Pt  120 (363)
                      +.+++.++.  ..++.|+++||++|++..+.+++..         +.   +..+|++.++       ++.+.+++.++|+
T Consensus        10 ~~~~~~i~~--~~vv~f~~~~Cp~C~~~~~~L~~~~---------~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~   78 (114)
T 2hze_A           10 EFVQQRLAN--NKVTIFVKYTCPFCRNALDILNKFS---------FKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPR   78 (114)
T ss_dssp             HHHHTTCCT--TCEEEEECTTCHHHHHHHHHHTTSC---------BCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCE
T ss_pred             HHHHHHhcc--CCEEEEEeCCChhHHHHHHHHHHcC---------CCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCE
Confidence            445555544  3477799999999999998877543         33   7778888774       7888999999999


Q ss_pred             EEEEeCCEEE
Q 017971          121 LKIFMHGIPT  130 (363)
Q Consensus       121 ~~~~~~g~~~  130 (363)
                      +++  +|+.+
T Consensus        79 v~i--~g~~i   86 (114)
T 2hze_A           79 IFF--GKTSI   86 (114)
T ss_dssp             EEE--TTEEE
T ss_pred             EEE--CCEEE
Confidence            743  77655

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.30  E-value=2.1e-06  Score=71.46  Aligned_cols=86  Identities=16%  Similarity=0.253  Sum_probs=63.4

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----------------------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------------------------  104 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------------  104 (363)
                      ..++.++.|+++||++|+.+.|.+.++.+.+.+   ++.|-.+...                                  
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~  100 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA---DVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHK  100 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT---TEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC---CeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999998877643   4767655442                                  


Q ss_pred             ---------------------------------------cchhhhhhCCcCcCCEEEEEeCCEEE-eecCCCCHHHHHHH
Q 017971          105 ---------------------------------------KYSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRY  144 (363)
Q Consensus       105 ---------------------------------------~~~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~i~~~  144 (363)
                                                             .+...++++||.++|++++  +|+.. ...|..+.+.+.+.
T Consensus       101 ~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~  178 (192)
T 3h93_A          101 EHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKL  178 (192)
T ss_dssp             SCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHH
T ss_pred             hCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHH
Confidence                                                   0122456679999999987  66543 45577788888777


Q ss_pred             HHhhc
Q 017971          145 LKKFV  149 (363)
Q Consensus       145 i~~~~  149 (363)
                      +...+
T Consensus       179 i~~l~  183 (192)
T 3h93_A          179 ADYLI  183 (192)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76553

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.28  E-value=1.1e-05  Score=59.91  Aligned_cols=102  Identities=15%  Similarity=0.177  Sum_probs=81.2

Q ss_pred             cccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          255 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       255 ~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      +.+++.+++.. +...++++++.|+ .......+.+...+.++++++++ +.|+.+|.+..+.+++.+|+   ...|+++
T Consensus         4 v~~l~~~~f~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~   79 (108)
T 2trx_A            4 IIHLTDDSFDTDVLKADGAILVDFW-AEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTLL   79 (108)
T ss_dssp             EEECCTTTHHHHTTTCSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTC---CSSSEEE
T ss_pred             ceecchhhHHHHHHhcCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCC---cccCEEE
Confidence            56788888874 4455666766665 45677788889999999999886 99999999998999999999   6789999


Q ss_pred             EEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          333 VWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       333 i~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++ .+|+ .....|....+.+..|+.+.|.
T Consensus        80 ~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  108 (108)
T 2trx_A           80 LF-KNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EE-eCCEEEEEEecCCCHHHHHHHHHHhhC
Confidence            99 4554 4566777788889999888763

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.27  E-value=3.5e-06  Score=66.24  Aligned_cols=105  Identities=11%  Similarity=0.096  Sum_probs=86.7

Q ss_pred             CCcccCChhhHH-hhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          253 PLSVPINQDTLN-LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       253 p~~~~lt~~~~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      +.+.+++.+++. .+...++++++.|+. ......+.+...+.++++.+++ +.|+.+|++..+.+++.+++   ...|+
T Consensus         6 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt   81 (140)
T 3hz4_A            6 SSIIEFEDMTWSQQVEDSKKPVVVMFYS-PACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGV---QGTPT   81 (140)
T ss_dssp             TTEEEECHHHHHHHTTTCSSCEEEEEEC-TTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTC---CEESE
T ss_pred             cceEEcchHhHHHHHHhCCCcEEEEEEC-CCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCC---CcCCE
Confidence            456788888888 566667788777764 4677888899999999999888 99999999999999999999   67999


Q ss_pred             EEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          331 MVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       331 ~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++...+......+....+.+..|+..+|.
T Consensus        82 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           82 FKFFCHGRPVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             EEEEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEEeCCcEEEEEcCCCCHHHHHHHHHHHhc
Confidence            9999554455677788888899999988774

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.27  E-value=8e-06  Score=60.55  Aligned_cols=102  Identities=12%  Similarity=0.180  Sum_probs=81.2

Q ss_pred             cccCChhhHHhh-hcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          255 SVPINQDTLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       255 ~~~lt~~~~~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      +.+++.+++... ...++++++.|+. ......+.+...+.++++++++ +.|+.+|.+..+.+++.+|+   ...|+++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~   78 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWA-PWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGI---RSIPTIM   78 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTC---CSSCEEE
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEEC-CCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC---CcCCEEE
Confidence            356778888774 4556777777664 4677788889999999999886 99999999998999999999   6789999


Q ss_pred             EEeCCC-CeeEEEEEEeehhhhhHhhhhhc
Q 017971          333 VWDGNE-NYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       333 i~~~~~-~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++ +| ......|....+.+..++..+|.
T Consensus        79 ~~~-~G~~~~~~~G~~~~~~l~~~l~~~l~  107 (107)
T 1dby_A           79 VFK-GGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             EES-SSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             EEe-CCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            984 55 45567777778889999888763

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.27  E-value=7.9e-06  Score=60.29  Aligned_cols=96  Identities=11%  Similarity=0.143  Sum_probs=77.1

Q ss_pred             hhhHHhhhc--CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971          260 QDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN  337 (363)
Q Consensus       260 ~~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~  337 (363)
                      .++++....  .++++++.|+. ......+.+...+.+++++++++.|+.+|.++.+.+++.+++   ...|++++++..
T Consensus         8 ~~~~~~~l~~~~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~g   83 (105)
T 3m9j_A            8 KTAFQEALDAAGDKLVVVDFSA-TWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEV---KSMPTFQFFKKG   83 (105)
T ss_dssp             HHHHHHHHHHTTTSCEEEEEEC-TTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTC---CBSSEEEEEETT
T ss_pred             HHHHHHHHHhcCCCeEEEEEEC-CCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCC---CcCcEEEEEECC
Confidence            456665444  56777777764 467778889999999999999999999999999999999999   679999999655


Q ss_pred             CCeeEEEEEEeehhhhhHhhhhh
Q 017971          338 ENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       338 ~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +......+. ..+.+..++..+|
T Consensus        84 ~~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           84 QKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEEEEEESS-CHHHHHHHHHHHC
T ss_pred             eEEEEEeCC-CHHHHHHHHHHhC
Confidence            555666777 8888998888765

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.26  E-value=2.9e-06  Score=70.74  Aligned_cols=43  Identities=21%  Similarity=0.458  Sum_probs=36.5

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      .++++++.||++||++|+++.|.+.++.+.+.+   ++.|..++..
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ---DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT---TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC---CeEEEEEecc
Confidence            457899999999999999999999999887644   4888888764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=1.4e-06  Score=67.61  Aligned_cols=68  Identities=16%  Similarity=0.199  Sum_probs=49.8

Q ss_pred             hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc---h----hhhhhCCcCcCCEEE
Q 017971           50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---S----RLASKQEIDAFPTLK  122 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~----~l~~~~~i~~~Pt~~  122 (363)
                      .+.+++++..++  ++.|+++||++|++..+.+.+..         +.+..+|++.+   +    ++.+.+++.++|+++
T Consensus        17 ~~~~~~~i~~~~--vvvf~~~~Cp~C~~~~~~L~~~~---------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~   85 (130)
T 2cq9_A           17 VNQIQETISDNC--VVIFSKTSCSYCTMAKKLFHDMN---------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF   85 (130)
T ss_dssp             HHHHHHHHHHSS--EEEEECSSCSHHHHHHHHHHHHT---------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE
T ss_pred             HHHHHHHHcCCc--EEEEEcCCChHHHHHHHHHHHcC---------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE
Confidence            455777776654  34499999999999999888753         34556777655   3    377889999999984


Q ss_pred             EEeCCEEE
Q 017971          123 IFMHGIPT  130 (363)
Q Consensus       123 ~~~~g~~~  130 (363)
                        .+|+.+
T Consensus        86 --i~G~~i   91 (130)
T 2cq9_A           86 --VNGTFI   91 (130)
T ss_dssp             --ETTEEE
T ss_pred             --ECCEEE
Confidence              477655

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.24  E-value=3.6e-06  Score=62.46  Aligned_cols=98  Identities=7%  Similarity=0.079  Sum_probs=68.8

Q ss_pred             hhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCC
Q 017971          260 QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN  339 (363)
Q Consensus       260 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~  339 (363)
                      .+++......++++++.|+.+ .....+.+...+.+++++++++.|+.+|.++.+.+++.+|+   ...|++++++....
T Consensus         8 ~~~~~~~~~~~~~vlv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v---~~~Pt~~~~~~G~~   83 (105)
T 4euy_A            8 IEELATYIEEQQLVLLFIKTE-NCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAV---FTGPTVLLFYNGKE   83 (105)
T ss_dssp             --CCSSSTTCSSEEEEEEEES-SCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC------------CCCCEEEEEETTEE
T ss_pred             HHHHHHHHhcCCCEEEEEeCC-CCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCC---CCCCEEEEEeCCeE
Confidence            345555556667777777654 67778888999999999998899999999999999999999   67999999974334


Q ss_pred             eeEEEEEEeehhhhhHhhhhhc
Q 017971          340 YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       340 y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      .....+....+.+..++.++|+
T Consensus        84 ~~~~~g~~~~~~l~~~l~~~~e  105 (105)
T 4euy_A           84 ILRESRFISLENLERTIQLFEE  105 (105)
T ss_dssp             EEEEESSCCHHHHHHHHHTTC-
T ss_pred             EEEEeCCcCHHHHHHHHHHhhC
Confidence            5666788888999999988764

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.24  E-value=1.1e-05  Score=59.28  Aligned_cols=99  Identities=16%  Similarity=0.168  Sum_probs=75.5

Q ss_pred             cCCh-hhHHhhhc--CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          257 PINQ-DTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       257 ~lt~-~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      +++. +++.....  .+++.++.|+ .......+.+...+.+++++++++.|+.+|.+..+.+++.+|+   ...|++++
T Consensus         3 ~i~~~~~~~~~l~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~~   78 (104)
T 2vim_A            3 VLATAADLEKLINENKGRLIVVDFF-AQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSV---TAMPTFVF   78 (104)
T ss_dssp             ECCSHHHHHHHHHTTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSSSEEEE
T ss_pred             ecCCHHHHHHHHHhcCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCC---ccccEEEE
Confidence            4444 66666544  5677777776 4467778888999999999998899999999999999999999   67899999


Q ss_pred             EeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          334 WDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       334 ~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++.........| ...+.+..++..+|
T Consensus        79 ~~~g~~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           79 IKDGKEVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             EETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             EeCCcEEEEEeC-CCHHHHHHHHHhhC
Confidence            974333445555 56778888887654

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.24  E-value=2e-06  Score=68.11  Aligned_cols=68  Identities=16%  Similarity=0.205  Sum_probs=50.0

Q ss_pred             hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc---h----hhhhhCCcCcCCEEE
Q 017971           50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---S----RLASKQEIDAFPTLK  122 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~----~l~~~~~i~~~Pt~~  122 (363)
                      .+.+++++.+++ + +.|+++||++|++..+.+.++.         +.+..+|++.+   +    ++++.+++.++|+++
T Consensus        39 ~~~~~~~i~~~~-V-vvf~~~~Cp~C~~~k~~L~~~~---------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if  107 (146)
T 2ht9_A           39 VNQIQETISDNC-V-VIFSKTSCSYCTMAKKLFHDMN---------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF  107 (146)
T ss_dssp             HHHHHHHHHHCS-E-EEEECTTCHHHHHHHHHHHHHT---------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE
T ss_pred             HHHHHHHhcCCC-E-EEEECCCChhHHHHHHHHHHcC---------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE
Confidence            466777776653 3 3499999999999999988753         33455676654   3    378889999999984


Q ss_pred             EEeCCEEE
Q 017971          123 IFMHGIPT  130 (363)
Q Consensus       123 ~~~~g~~~  130 (363)
                        .+|+.+
T Consensus       108 --i~G~~i  113 (146)
T 2ht9_A          108 --VNGTFI  113 (146)
T ss_dssp             --ETTEEE
T ss_pred             --ECCEEE
Confidence              477655

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.24  E-value=1.3e-05  Score=60.16  Aligned_cols=104  Identities=12%  Similarity=0.107  Sum_probs=83.4

Q ss_pred             CCcccCChhhHHhh-hcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          253 PLSVPINQDTLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       253 p~~~~lt~~~~~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      ..+.+++.+++... ...++++++.|+. ......+.+...+.+++..+++ +.|+.+|.+..+.+++.+|+   ...|+
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v---~~~Pt   82 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAEQPVLVYFWA-SWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKV---EGVPA   82 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEEC-TTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTC---CSSSE
T ss_pred             CceEEeeccchhhHhhcCCceEEEEEEC-CCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCC---CceeE
Confidence            34677888888864 4566777777764 4667778888999999999886 99999999999999999999   67899


Q ss_pred             EEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          331 MVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       331 ~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++ .+|+ .....+....+.+..|+..+|.
T Consensus        83 ~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           83 LRLV-KGEQILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEE-cCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence            9999 5554 4556777788899999888764

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.23  E-value=1.7e-05  Score=59.29  Aligned_cols=100  Identities=9%  Similarity=0.103  Sum_probs=80.3

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEE
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW  334 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~  334 (363)
                      ....+.+++......++++++.|+.+ .....+.+...+.+++++++++.|+.+|.+..+.+++.+++   ...|+++++
T Consensus         9 ~~~~~~~~f~~~~~~~k~vlv~f~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v---~~~Pt~~~~   84 (109)
T 3f3q_A            9 TQFKTASEFDSAIAQDKLVVVDFYAT-WCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEV---SAMPTLLLF   84 (109)
T ss_dssp             EECCSHHHHHHHTTSSSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSSSEEEEE
T ss_pred             cCCCCHHHHHHHHhcCCEEEEEEECC-cCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCC---CccCEEEEE
Confidence            34566788888777788888877744 67778889999999999999999999999999999999999   679999999


Q ss_pred             eCCC-CeeEEEEEEeehhhhhHhhhhh
Q 017971          335 DGNE-NYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       335 ~~~~-~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      + +| ......+. ..+.+..++..+|
T Consensus        85 ~-~G~~~~~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           85 K-NGKEVAKVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             E-TTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             E-CCEEEEEEeCC-CHHHHHHHHHhhC
Confidence            8 55 44455555 5678888877654

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.22  E-value=1.2e-05  Score=59.54  Aligned_cols=101  Identities=6%  Similarity=0.091  Sum_probs=79.9

Q ss_pred             cccCChhhHHhh-hcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          255 SVPINQDTLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       255 ~~~lt~~~~~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      +.+++.+++... ...++++++.|+ .......+.+...+.++++++++ +.|+.+|.++.+.+++.+|+   ...|+++
T Consensus         4 v~~l~~~~~~~~~~~~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~   79 (107)
T 2i4a_A            4 TLAVSDSSFDQDVLKASGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQV---RSIPTLM   79 (107)
T ss_dssp             EEECCTTTHHHHTTTCSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTC---CSSSEEE
T ss_pred             eeecchhhhhHHHHhCCCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCC---CccCEEE
Confidence            567788888754 455667776666 45677788889999999998875 99999999998999999999   6799999


Q ss_pred             EEeCCCC-eeEEEEEEeehhhhhHhhhhh
Q 017971          333 VWDGNEN-YLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       333 i~~~~~~-y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++ .+|+ .....|....+.+..++...|
T Consensus        80 ~~-~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (107)
T 2i4a_A           80 LV-RDGKVIDKKVGALPKSQLKAWVESAQ  107 (107)
T ss_dssp             EE-ETTEEEEEEESCCCHHHHHHHHHHTC
T ss_pred             EE-eCCEEEEEecCCCCHHHHHHHHHhcC
Confidence            99 5554 555677778888888887654

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.20  E-value=2.8e-05  Score=61.56  Aligned_cols=109  Identities=14%  Similarity=0.134  Sum_probs=84.8

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEE-EECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC--ccchhhhhhCCcCc--
Q 017971           43 GKVIELDESNFDSAISSFDYILVD-FYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA--DKYSRLASKQEIDA--  117 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~-fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~--~~~~~l~~~~~i~~--  117 (363)
                      .-|.++|.+|..++..++-+..+. |....-..-..+.+.+.++|+.+++.   +.|+.+|.  +++..+.+.||+..  
T Consensus        14 PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgk---i~Fv~vd~~~~~~~~~l~~fGl~~~~   90 (147)
T 3bj5_A           14 PLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFAFIDSDHTDNQRILEFFGLKKEE   90 (147)
T ss_dssp             -CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTT---CEEEEECTTCGGGHHHHHHTTCCGGG
T ss_pred             CeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCc---eEEEEEecchHhHHHHHHHcCCCccc
Confidence            358999999999988776666555 44434444677899999999988764   99999999  66667889999986  


Q ss_pred             CCEEEEEeC---CEEEeec-CCCCHHHHHHHHHhhcCCCce
Q 017971          118 FPTLKIFMH---GIPTEYY-GPRKAELLVRYLKKFVAPDVS  154 (363)
Q Consensus       118 ~Pt~~~~~~---g~~~~y~-g~~~~~~i~~~i~~~~~~~v~  154 (363)
                      .|++.++..   +..+.+. +..+.+.|.+|+.+++...+.
T Consensus        91 ~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL~  131 (147)
T 3bj5_A           91 CPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIK  131 (147)
T ss_dssp             CSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCSC
T ss_pred             CCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCcc
Confidence            899999874   4444444 788999999999999876653

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.20  E-value=1.6e-05  Score=60.36  Aligned_cols=105  Identities=13%  Similarity=0.116  Sum_probs=83.4

Q ss_pred             CCCcccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          252 LPLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       252 ~p~~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      -+.+..++.+++.. +...++++++.|+ .......+.+...+.++++++.+ +.|+.+|.++.+.+++.+++   ...|
T Consensus        12 ~~~~~~~~~~~f~~~v~~~~k~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~P   87 (119)
T 1w4v_A           12 STTFNIQDGPDFQDRVVNSETPVVVDFH-AQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEV---SAVP   87 (119)
T ss_dssp             CSEEECCSHHHHHHHTTTCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTC---CSSS
T ss_pred             ceEEEecChhhHHHHHHcCCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCC---Cccc
Confidence            34567788888876 4456677777776 44677788889999999998875 99999999998999999999   6799


Q ss_pred             eEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++++ .+|+ .....+....+.+..|+..+|.
T Consensus        88 t~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           88 TVLAM-KNGDVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             EEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEE-eCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence            99999 4554 4556677778889999887763

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.20  E-value=1.2e-05  Score=63.55  Aligned_cols=104  Identities=13%  Similarity=0.156  Sum_probs=86.1

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      .+..++.+++......++++++.|+.+ .....+.+...+.++++++.+ +.|+.+|.++.+.+++.|++   ...|+++
T Consensus        39 ~v~~l~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v---~~~Pt~~  114 (148)
T 3p2a_A           39 EVINATAETLDKLLQDDLPMVIDFWAP-WCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRI---RSIPTIM  114 (148)
T ss_dssp             CCEECCTTTHHHHTTCSSCEEEEEECS-SCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---CSSSEEE
T ss_pred             CceecCHHHHHHHHhcCCcEEEEEECC-CCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCC---CccCEEE
Confidence            356788888888777778888877744 667778889999999999876 99999999999999999999   6799999


Q ss_pred             EEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          333 VWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       333 i~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++.........+....+.+..|+...|+
T Consensus       115 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  143 (148)
T 3p2a_A          115 LYRNGKMIDMLNGAVPKAPFDNWLDEQLS  143 (148)
T ss_dssp             EEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             EEECCeEEEEEeCCCCHHHHHHHHHHHhc
Confidence            99644455667788888999999988875

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.18  E-value=3.8e-06  Score=62.54  Aligned_cols=67  Identities=15%  Similarity=0.305  Sum_probs=49.9

Q ss_pred             hhHHHhHcCCCeEEEEEEC-----CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCcCcCCEE
Q 017971           51 SNFDSAISSFDYILVDFYA-----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTL  121 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~-----~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~  121 (363)
                      +.+++.++.++ ++ .|+.     +||++|++..+.+.+..         +.+..+|.++++.    +.+.+++.++|++
T Consensus         8 ~~~~~~i~~~~-vv-vf~~g~~~~~~C~~C~~~~~~L~~~~---------i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v   76 (105)
T 2yan_A            8 ERLKVLTNKAS-VM-LFMKGNKQEAKCGFSKQILEILNSTG---------VEYETFDILEDEEVRQGLKAYSNWPTYPQL   76 (105)
T ss_dssp             HHHHHHHTSSS-EE-EEESBCSSSBCTTHHHHHHHHHHHHT---------CCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred             HHHHHHhccCC-EE-EEEecCCCCCCCccHHHHHHHHHHCC---------CCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence            45677776654 43 4777     99999999999887652         6678889988766    4555789999998


Q ss_pred             EEEeCCEEE
Q 017971          122 KIFMHGIPT  130 (363)
Q Consensus       122 ~~~~~g~~~  130 (363)
                        |.+|+.+
T Consensus        77 --~i~g~~i   83 (105)
T 2yan_A           77 --YVKGELV   83 (105)
T ss_dssp             --EETTEEE
T ss_pred             --EECCEEE
Confidence              4577654

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.18  E-value=1.3e-05  Score=60.76  Aligned_cols=106  Identities=7%  Similarity=0.146  Sum_probs=83.4

Q ss_pred             CCCcccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          252 LPLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       252 ~p~~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      ...+.+++.+++.. +...++++++.|+. ......+.+...+.++++++++ +.|+.+|++..+.+++.+|+   ...|
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i---~~~P   86 (121)
T 2i1u_A           11 KSATIKVTDASFATDVLSSNKPVLVDFWA-TWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQV---VSIP   86 (121)
T ss_dssp             -CCSEECCTTTHHHHTTTCSSCEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---CSSS
T ss_pred             cccceecCHHHHHHHHHhCCCcEEEEEEC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCC---CcCC
Confidence            34567788888875 44566777777664 4677788899999999999876 99999999999999999999   6789


Q ss_pred             eEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++++.........+....+.+..|+..+|.
T Consensus        87 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           87 TLILFKDGQPVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred             EEEEEECCEEEEEecCCCCHHHHHHHHHHHHh
Confidence            99999733345667777778889988877664

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.18  E-value=9.4e-06  Score=60.94  Aligned_cols=102  Identities=10%  Similarity=0.055  Sum_probs=82.0

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      +.+++.+++.... .++++++.|+. ......+.+...+.++++++++ +.|+.+|.+..+.+++.+|+   ...|++++
T Consensus         3 v~~l~~~~~~~~~-~~~~~lv~f~a-~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~~   77 (112)
T 2voc_A            3 IVKATDQSFSAET-SEGVVLADFWA-PWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGV---MSIPTLLV   77 (112)
T ss_dssp             CEECCTTTHHHHH-SSSEEEEEEEC-TTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTC---CSBSEEEE
T ss_pred             eEEecHHHHHHHh-CCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCC---CcccEEEE
Confidence            3567888888766 66777777664 4566677788888999988875 99999999998999999999   67999999


Q ss_pred             EeCCCC-eeEEEEEEeehhhhhHhhhhhcC
Q 017971          334 WDGNEN-YLTVSINVLKTRVCFFMLTLLQF  362 (363)
Q Consensus       334 ~~~~~~-y~~~~~~~~~~~~~~~~~~~~~~  362 (363)
                      + .+|+ .....|....+.+..|+...+..
T Consensus        78 ~-~~G~~~~~~~G~~~~~~l~~~l~~~~~~  106 (112)
T 2voc_A           78 L-KDGEVVETSVGFKPKEALQELVNKHLLE  106 (112)
T ss_dssp             E-ETTEEEEEEESCCCHHHHHHHHHTTSCS
T ss_pred             E-eCCEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            9 5664 56678888889999999887754

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.16  E-value=1.4e-05  Score=63.99  Aligned_cols=103  Identities=10%  Similarity=0.123  Sum_probs=83.4

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      +.+++..++......++++++.|+. ......+.+...+.++++++++ +.|+.+|.++++.+++.||+   ...|++++
T Consensus        49 ~~~l~~~~f~~~~~~~~~vlv~F~a-~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i---~~~Pt~~~  124 (155)
T 2ppt_A           49 VAGIDPAILARAERDDLPLLVDFWA-PWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRI---QGIPAFIL  124 (155)
T ss_dssp             EEECCHHHHHHHTTCSSCEEEEEEC-TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTC---CSSSEEEE
T ss_pred             CccCCHHHHHHHHhCCCcEEEEEEC-CCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCC---CcCCEEEE
Confidence            4577888888766667788887774 4667778889999999999875 99999999999999999999   67999999


Q ss_pred             EeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          334 WDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       334 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++.........+....+.+..|+..+|.
T Consensus       125 ~~~G~~~~~~~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          125 FHKGRELARAAGARPASELVGFVRGKLG  152 (155)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EeCCeEEEEecCCCCHHHHHHHHHHHhc
Confidence            9533345567788888899999988775

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.16  E-value=2e-05  Score=58.93  Aligned_cols=104  Identities=12%  Similarity=0.185  Sum_probs=82.0

Q ss_pred             CcccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          254 LSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       254 ~~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      .+..++.+++.. +...++++++.|+. ......+.+...+.++++++++ +.|+.+|.+..+.+++.+|+   ...|++
T Consensus         6 ~v~~l~~~~~~~~~~~~~~~~vv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~   81 (112)
T 1t00_A            6 TLKHVTDDSFEQDVLKNDKPVLVDFWA-AWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGV---MSIPTL   81 (112)
T ss_dssp             CCEEECTTTHHHHTTTCSSCEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred             eEEecchhhHHHHHhhCCCeEEEEEEC-CCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCC---CcccEE
Confidence            356778888765 44566777777764 4677778889999999999876 99999999999999999999   678999


Q ss_pred             EEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          332 VVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       332 vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++..........|....+.+..++..+|.
T Consensus        82 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           82 NVYQGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EEEeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            998543345667777778899999888774

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.16  E-value=1.3e-05  Score=61.64  Aligned_cols=101  Identities=8%  Similarity=0.042  Sum_probs=80.1

Q ss_pred             cccCCh-hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          255 SVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       255 ~~~lt~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      +.+++. +++......++++++.|+. ......+.+...+.+++++++++.|+.+|.++.+.+++.+++   ...|++++
T Consensus        21 v~~l~~~~~f~~~~~~~k~vvv~F~a-~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~Pt~~i   96 (125)
T 1r26_A           21 VVDVYSVEQFRNIMSEDILTVAWFTA-VWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRV---LQLPTFII   96 (125)
T ss_dssp             CEEECCHHHHHHHHHSSSCEEEEEEC-TTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSSSEEEE
T ss_pred             eEECCCHHHHHHHHccCCEEEEEEEC-CcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCC---CcccEEEE
Confidence            567776 7887766777788877774 467777888999999999998899999999999999999999   67999998


Q ss_pred             EeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          334 WDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       334 ~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +. +|+ .....+ ...+.+..++..+|.
T Consensus        97 ~~-~G~~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           97 AR-SGKMLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             EE-TTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred             Ee-CCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence            84 553 444555 566788888887764

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.15  E-value=1.5e-05  Score=61.56  Aligned_cols=102  Identities=15%  Similarity=0.180  Sum_probs=81.3

Q ss_pred             cccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          255 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       255 ~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      +.+++.+++.. +...++++++.|+ .......+.+...+.++++++++ +.|+.+|.++.+.+++.+++   ...|+++
T Consensus        24 v~~l~~~~f~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~   99 (128)
T 2o8v_B           24 IIHLTDDSFDTDVLKADGAILVDFW-AEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTLL   99 (128)
T ss_dssp             SEEECTTTHHHHTTTCSSEEEEEEE-CSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTC---CSSSEEE
T ss_pred             cEecChhhHHHHHHhcCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC---CccCEEE
Confidence            55678888875 4455666666665 44677788889999999999886 99999999998899999999   6799999


Q ss_pred             EEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          333 VWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       333 i~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++ .+|+ .....+....+.+..|+..+|.
T Consensus       100 ~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  128 (128)
T 2o8v_B          100 LF-KNGEVAATKVGALSKGQLKEFLDANLA  128 (128)
T ss_dssp             EE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EE-eCCEEEEEEcCCCCHHHHHHHHHHhhC
Confidence            99 5564 4567777788899999988763

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.15  E-value=1.4e-05  Score=62.06  Aligned_cols=101  Identities=14%  Similarity=0.085  Sum_probs=82.5

Q ss_pred             ccCChhhHHhhhcCCC-cEEEEEEeCCCh--hhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          256 VPINQDTLNLLKDDKR-KIVLAIVEDETE--EKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       256 ~~lt~~~~~~l~~~~~-~~~i~~~~~~~~--~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      +++|.++++....... ++++.|..+ -.  ...+.+..++.++++++.+ +.|+.||.++++.+...||+   ...|++
T Consensus        18 ~~vt~~~F~~~v~~~~~~vlVdF~A~-wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV---~siPTl   93 (137)
T 2qsi_A           18 TLVDEATVDDFIAHSGKIVVLFFRGD-AVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGV---AVCPSL   93 (137)
T ss_dssp             EEECTTTHHHHHHTSSSEEEEEECCC-TTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTC---CSSSEE
T ss_pred             cccCHhHHHHHHhcCCCcEEEEEeCC-ccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCC---ccCCEE
Confidence            3778888887554444 777766643 44  5667889999999999987 99999999999999999999   789999


Q ss_pred             EEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          332 VVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       332 vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++|+....-....|-..++.+..++...|
T Consensus        94 ilFkdG~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           94 AVVQPERTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            99988777777778888888888887765

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.14  E-value=7.2e-06  Score=63.25  Aligned_cols=103  Identities=13%  Similarity=0.140  Sum_probs=83.5

Q ss_pred             CcccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          254 LSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       254 ~~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      .+.+++.+++.. +...++++++.|+.+ .....+.+...+.++++++++ +.|+.+|.+..+.+++.+++   ...|++
T Consensus        18 ~v~~l~~~~f~~~~~~~~~~~lv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v---~~~Pt~   93 (130)
T 2dml_A           18 DVIELTPSNFNREVIQSDGLWLVEFYAP-WCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGV---QGFPTI   93 (130)
T ss_dssp             SSEECCTTTHHHHTTTCSSCEEEEEECT-TCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTC---CSSSEE
T ss_pred             CcEECCHHHHHHHHhcCCCeEEEEEECC-CCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCC---CccCEE
Confidence            356788888887 556667777777644 555666778888999999888 99999999999999999999   679999


Q ss_pred             EEEeCCCC-eeEEEEEEeehhhhhHhhhhh
Q 017971          332 VVWDGNEN-YLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       332 vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++++.+++ .....+....+.+..|+...|
T Consensus        94 ~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           94 KIFGANKNKPEDYQGGRTGEAIVDAALSAL  123 (130)
T ss_dssp             EEESSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred             EEEeCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence            99999886 777778888888888887765

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.14  E-value=1.6e-05  Score=62.35  Aligned_cols=104  Identities=11%  Similarity=0.068  Sum_probs=71.1

Q ss_pred             CCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          253 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      +.+.+++.+++......+..+++ .|........+.+...+.+++.++++ +.|+.+|.+.++.+++.+++   ...|++
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~vvv-~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~  108 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPLTLV-DFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGV---RSVPTL  108 (140)
T ss_dssp             ----------------CCCEEEE-EEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred             CccccCCHHHHHHHHHcCCCEEE-EEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCC---CccCEE
Confidence            44567777777765444445444 44455777788899999999999985 99999999999999999999   679999


Q ss_pred             EEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          332 VVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       332 vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++. +|+ .....+....+.+..|+..+|.
T Consensus       109 ~~~~-~G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          109 VLFR-RGAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EEEE-TTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEEe-CCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence            9995 554 5566777778899999988875

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.13  E-value=2.6e-05  Score=57.51  Aligned_cols=100  Identities=12%  Similarity=0.116  Sum_probs=74.6

Q ss_pred             ccCCh-hhHHhhhc--CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC-CcEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          256 VPINQ-DTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       256 ~~lt~-~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~-~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      .+++. +++.....  .+++.++.|+. ......+.+...+++++++++ ++.|+.+|.++.+.+++.+|+   ...|++
T Consensus         3 ~~l~~~~~~~~~l~~~~~~~~vv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~   78 (106)
T 1xwb_A            3 YQVKDKADLDGQLTKASGKLVVLDFFA-TWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNI---SSMPTF   78 (106)
T ss_dssp             EECCSHHHHHHHHHHHTTSEEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred             eecCCHHHHHHHHHhcCCCEEEEEEEC-CcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCC---CcccEE
Confidence            34555 66666444  56677766664 467778888999999999985 599999999999999999999   678999


Q ss_pred             EEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          332 VVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       332 vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++++.........+ ...+.+..++..+|
T Consensus        79 ~~~~~G~~~~~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           79 VFLKNGVKVEEFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             EEEETTEEEEEEES-CCHHHHHHHHHHTC
T ss_pred             EEEcCCcEEEEEcC-CCHHHHHHHHHHhC
Confidence            98864334445556 56677888877654

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.13  E-value=1.4e-05  Score=68.09  Aligned_cols=88  Identities=13%  Similarity=0.191  Sum_probs=64.4

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      ++++++|.|| ++||+.|+...|.+.++.+++++.+  +.+..|.++.                            +..+
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~--v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~  132 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKN--VELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDI  132 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHH
Confidence            4579999999 9999999999999999998886533  6666666542                            1245


Q ss_pred             hhhCCc-----CcCCEEEEEe-CCEEEe-ecC----CCCHHHHHHHHHhh
Q 017971          110 ASKQEI-----DAFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKKF  148 (363)
Q Consensus       110 ~~~~~i-----~~~Pt~~~~~-~g~~~~-y~g----~~~~~~i~~~i~~~  148 (363)
                      ++.|++     ...|+.+++. +|+... +.|    .++.+++.+.+...
T Consensus       133 ~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L  182 (221)
T 2c0d_A          133 SKNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI  182 (221)
T ss_dssp             HHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            667787     3689999995 565443 333    35678888877654

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=1.1e-05  Score=62.36  Aligned_cols=105  Identities=12%  Similarity=0.130  Sum_probs=82.9

Q ss_pred             CCcccCChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC----C-cEEEEEeccCchhHHhhcCCCCCC
Q 017971          253 PLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----E-LVFCYVGIKQFADFADTFEANKKS  326 (363)
Q Consensus       253 p~~~~lt~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~----~-~~f~~vd~~~~~~~~~~~gi~~~~  326 (363)
                      ..+.+++.+++.... ..++++++.|+ .......+.+...+.+++++++    + +.|+.+|++..+.+++.+++   .
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v---~   82 (133)
T 1x5d_A            7 GDVIELTDDSFDKNVLDSEDVWMVEFY-APWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGI---R   82 (133)
T ss_dssp             CSCEECCTTHHHHHTTTSSSEEEEEEE-CTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTC---C
T ss_pred             CcCEEcCHhhHHHHHhcCCCeEEEEEE-CCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCC---C
Confidence            346778888888743 55666666665 4467777888888888888765    4 99999999998999999999   6


Q ss_pred             CCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          327 KLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       327 ~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ..|++++++..+......+....+.+..|+..+|+
T Consensus        83 ~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           83 GFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             SSSEEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred             eeCeEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence            79999999985456667788888899999888764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.11  E-value=2.2e-05  Score=59.70  Aligned_cols=104  Identities=11%  Similarity=0.114  Sum_probs=81.6

Q ss_pred             CCCcccCChhhHHhhhc----CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCC
Q 017971          252 LPLSVPINQDTLNLLKD----DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK  327 (363)
Q Consensus       252 ~p~~~~lt~~~~~~l~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~  327 (363)
                      .+.+...+.+++.....    .++++++.|+. ......+.+...+.+++++++++.|+.+|.++.+.+++.+|+   ..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~   87 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTA-SWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSV---EA   87 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CS
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCC---Cc
Confidence            45566677777776433    46777777764 467778888999999999998899999999999999999999   67


Q ss_pred             CCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          328 LPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       328 ~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      .|+++++. +|+ .....+.. .+.+..|+..+|.
T Consensus        88 ~Pt~~~~~-~G~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           88 MPTFLFMK-EGDVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             SSEEEEEE-TTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             ccEEEEEe-CCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence            99999885 553 45566766 8889999888764

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.11  E-value=6e-06  Score=67.85  Aligned_cols=88  Identities=14%  Similarity=0.150  Sum_probs=62.7

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------chhhhhhCCcC
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------YSRLASKQEID  116 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~  116 (363)
                      .+++++|.|| +.||+.|....|.+.++.+++++.+  +.+..|.++.                     +..+++.|++.
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~--~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~  127 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQIN--ATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVI  127 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCE
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCc
Confidence            4578889998 9999999999999999999987653  6677676542                     34577778875


Q ss_pred             c------------CCEEEEEe-CCEEEe-ecC---CCCHHHHHHHHHhh
Q 017971          117 A------------FPTLKIFM-HGIPTE-YYG---PRKAELLVRYLKKF  148 (363)
Q Consensus       117 ~------------~Pt~~~~~-~g~~~~-y~g---~~~~~~i~~~i~~~  148 (363)
                      .            .|+.+++. +|+... +.+   ....+++++.+++.
T Consensus       128 ~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          128 KEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             EEECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             ccccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence            3            58888885 566542 433   23456666666543

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.09  E-value=1.5e-06  Score=70.42  Aligned_cols=114  Identities=14%  Similarity=0.136  Sum_probs=76.2

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc---
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---  104 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---  104 (363)
                      .|..+|+...++.++..+.|+     +...+++++++.|| ++||++|....|.+.++.+++++.+  +.+..|..+   
T Consensus         7 vG~~aPdF~l~~~~G~~v~Ls-----d~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~--v~vv~is~d~~~   79 (164)
T 4gqc_A            7 LGEKAPDFTLPNQDFEPVNLY-----EVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVDSPW   79 (164)
T ss_dssp             TTSBCCCCEEEBTTSCEEEHH-----HHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS--SEEEEEESSCHH
T ss_pred             CCCCCcCcEeECCCCCEEEHH-----HHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC--ceEEEecCCCHH
Confidence            355667766666666666554     33446788888888 9999999999999988888877654  666666643   


Q ss_pred             ------------------cchhhhhhCCcC----------cCCEEEEEe-CCEEE-ee-----cCCCCHHHHHHHHHhhc
Q 017971          105 ------------------KYSRLASKQEID----------AFPTLKIFM-HGIPT-EY-----YGPRKAELLVRYLKKFV  149 (363)
Q Consensus       105 ------------------~~~~l~~~~~i~----------~~Pt~~~~~-~g~~~-~y-----~g~~~~~~i~~~i~~~~  149 (363)
                                        .+.++++.||+.          ..|+.++.. +|+.. .+     .+..+.+++++-+++..
T Consensus        80 ~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  159 (164)
T 4gqc_A           80 CLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  159 (164)
T ss_dssp             HHHHHHHHTTCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence                              234567778773          367777775 45432 22     23346777777776653

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.09  E-value=2.4e-05  Score=63.01  Aligned_cols=107  Identities=12%  Similarity=0.029  Sum_probs=67.9

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---  105 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---  105 (363)
                      +...|+....+.++..+.+.+-       ++++++|.||+ .||++|....|.+.++.+++    .++.+..|.++.   
T Consensus        19 G~~~P~f~l~~~~G~~v~l~~~-------~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~----~~v~vv~is~d~~~~   87 (163)
T 1psq_A           19 GDKALDFSLTTTDLSKKSLADF-------DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL----DNTVVLTVSMDLPFA   87 (163)
T ss_dssp             TSBCCCCEEECTTSCEEEGGGG-------TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC----TTEEEEEEESSCHHH
T ss_pred             CCCCCCEEEEcCCCcEeeHHHh-------CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc----CCcEEEEEECCCHHH
Confidence            3344555555555555555432       45799999995 99999999999999988766    236666665432   


Q ss_pred             --------------------chhhhhhCCcC----c--CCEEEEEe-CCEEEe-ecC-----CCCHHHHHHHHHh
Q 017971          106 --------------------YSRLASKQEID----A--FPTLKIFM-HGIPTE-YYG-----PRKAELLVRYLKK  147 (363)
Q Consensus       106 --------------------~~~l~~~~~i~----~--~Pt~~~~~-~g~~~~-y~g-----~~~~~~i~~~i~~  147 (363)
                                          +..+++.|++.    +  .|+.+++. +|+... +.|     ....+++.+.+++
T Consensus        88 ~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A           88 QKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             HHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence                                23456667765    3  38888885 565443 433     2334666666653

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.09  E-value=2e-05  Score=63.55  Aligned_cols=69  Identities=9%  Similarity=0.028  Sum_probs=49.7

Q ss_pred             CCCeEEEEEE-CCCChhhh-hHHHHHHHHHHHhhcCCCCeE-EEEEeCc-----------------------cchhhhhh
Q 017971           59 SFDYILVDFY-APWCGHCK-RLAPQLDEAAPILAKLKEPIV-IAKVDAD-----------------------KYSRLASK  112 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~-~~~~~~~~~a~~~~~~~~~v~-~~~vd~~-----------------------~~~~l~~~  112 (363)
                      ++++++|.|| +.||+.|. ...|.+.++.+++++.+  +. +..|..+                       .+.++++.
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~--v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  111 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG--VTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHA  111 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHH
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHH
Confidence            4578999999 89999999 89999999998887544  44 4444332                       23446677


Q ss_pred             CCcC------c-----CCEEEEEeCCEE
Q 017971          113 QEID------A-----FPTLKIFMHGIP  129 (363)
Q Consensus       113 ~~i~------~-----~Pt~~~~~~g~~  129 (363)
                      ||+.      +     .|+.+++.+|+.
T Consensus       112 ~gv~~~~~~~g~~~~~~p~~~vid~G~i  139 (162)
T 1tp9_A          112 LGLELDLQEKGLGTRSRRFALLVDDLKV  139 (162)
T ss_dssp             TTCEEEETTTTSEEEECCEEEEEETTEE
T ss_pred             cCcccccccCCCCccceeEEEEEECCEE
Confidence            7775      2     688888776654

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.09  E-value=3.4e-06  Score=64.25  Aligned_cols=70  Identities=9%  Similarity=0.211  Sum_probs=50.9

Q ss_pred             hhHHHhHcCCCeEEEEEECCCChhhhhH-HHHHHHHHHHhhcCCCCeEEEEEeCccch-------hhhhhCCcCcCCEEE
Q 017971           51 SNFDSAISSFDYILVDFYAPWCGHCKRL-APQLDEAAPILAKLKEPIVIAKVDADKYS-------RLASKQEIDAFPTLK  122 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~-~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~Pt~~  122 (363)
                      +.+++.+..++  ++.|+++||++|++. .+.+++...      ..+.+..+|.+.++       ++.+.+++.++|++ 
T Consensus        16 ~~~~~~i~~~~--Vvvf~~~~Cp~C~~alk~~L~~~~~------~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v-   86 (118)
T 3c1r_A           16 KHVKDLIAENE--IFVASKTYCPYCHAALNTLFEKLKV------PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI-   86 (118)
T ss_dssp             HHHHHHHHHSS--EEEEECSSCHHHHHHHHHHHTTSCC------CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-
T ss_pred             HHHHHHHccCc--EEEEEcCCCcCHHHHHHHHHHHcCC------CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE-
Confidence            45666665543  556999999999998 777665431      12667788887764       58888999999997 


Q ss_pred             EEeCCEEE
Q 017971          123 IFMHGIPT  130 (363)
Q Consensus       123 ~~~~g~~~  130 (363)
                       |.+|+.+
T Consensus        87 -fi~g~~i   93 (118)
T 3c1r_A           87 -YINGKHI   93 (118)
T ss_dssp             -EETTEEE
T ss_pred             -EECCEEE
Confidence             5678765

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.08  E-value=6e-05  Score=61.24  Aligned_cols=68  Identities=15%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCCh-hhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCG-HCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~-~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      +...|+....+.++..+.+++  |     ++++++|.||.+||+ .|....+.+.++.+.+++.+.++.+..|.++
T Consensus         9 ~~~~PdF~L~d~~G~~v~l~d--~-----~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A            9 NWDLETFQFTNQDGKPFGTKD--L-----KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             CBCCCCCEEECTTSCEEEHHH--H-----TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCcCCCcEEECCCCCEEeHHH--h-----CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            334566666666776666643  2     678999999999996 7999999999999888776667888877765

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.07  E-value=6.1e-06  Score=59.65  Aligned_cols=70  Identities=16%  Similarity=0.165  Sum_probs=51.5

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-----cc----hhhhhhCCcCcCCEEEEEeCCEEEeec
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----KY----SRLASKQEIDAFPTLKIFMHGIPTEYY  133 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----~~----~~l~~~~~i~~~Pt~~~~~~g~~~~y~  133 (363)
                      .++.|+++||++|++..+.+++..         +.+-.+|.+     +.    +++.+.+++.++|++++  +|+.+   
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~~g---------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~i---   78 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKREG---------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKHV---   78 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHHHT---------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEEE---
T ss_pred             eEEEEECCCChHHHHHHHHHHHcC---------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEEE---
Confidence            367799999999999988887653         334445655     33    66777889999999987  67533   


Q ss_pred             CCCCHHHHHHHHH
Q 017971          134 GPRKAELLVRYLK  146 (363)
Q Consensus       134 g~~~~~~i~~~i~  146 (363)
                      |..+.+.|.+++.
T Consensus        79 ~G~~~~~l~~~l~   91 (92)
T 3ic4_A           79 LGYNEEKLKELIR   91 (92)
T ss_dssp             ESCCHHHHHHHHH
T ss_pred             eCCCHHHHHHHhc
Confidence            3458888888874

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=98.07  E-value=3.7e-05  Score=58.86  Aligned_cols=104  Identities=14%  Similarity=0.148  Sum_probs=80.4

Q ss_pred             cccCChhhHH-----hhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC-CcEEEEEe--ccCchhHHhhcCCCCCC
Q 017971          255 SVPINQDTLN-----LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVG--IKQFADFADTFEANKKS  326 (363)
Q Consensus       255 ~~~lt~~~~~-----~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~-~~~f~~vd--~~~~~~~~~~~gi~~~~  326 (363)
                      +..++..++.     .....++++++.|+ .......+.+...+.+++++++ ++.|+.+|  .+..+.+++.+|+   .
T Consensus         6 ~~~l~~~~~~~~~~~~~~~~~k~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v---~   81 (126)
T 2l57_A            6 IKQINFQSINVVENLEEAKEGIPTIIMFK-TDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDA---N   81 (126)
T ss_dssp             SSCTTTTCCSEESSTTTCCSSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTC---C
T ss_pred             cCCCCccccchhHHHHHHhCCCcEEEEEE-CCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCC---c
Confidence            3445555544     44455677777766 4467778888999999999985 49999999  8888889999999   6


Q ss_pred             CCCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhcC
Q 017971          327 KLPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQF  362 (363)
Q Consensus       327 ~~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~~  362 (363)
                      ..|++++++++|+ .....+....+.+..++...+.-
T Consensus        82 ~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~  118 (126)
T 2l57_A           82 IVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVK  118 (126)
T ss_dssp             SSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCCC
T ss_pred             ceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhcc
Confidence            7999999998876 44567778888999998887753

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.06  E-value=3.5e-05  Score=59.19  Aligned_cols=102  Identities=11%  Similarity=0.137  Sum_probs=81.0

Q ss_pred             CCcccCChhhHHhhhc-CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-----CC-cEEEEEeccCchhHHhhcCCCCC
Q 017971          253 PLSVPINQDTLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTLKAAASAN-----RE-LVFCYVGIKQFADFADTFEANKK  325 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~-----~~-~~f~~vd~~~~~~~~~~~gi~~~  325 (363)
                      ..+.+++.+++..... .++++++.|+. .-....+.+...+.++|..+     .+ +.|+.+|+++++.+++.+++   
T Consensus        15 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a-~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---   90 (127)
T 3h79_A           15 SRVVELTDETFDSIVMDPEKDVFVLYYV-PWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRV---   90 (127)
T ss_dssp             CCCEECCTTTHHHHHTCTTCEEEEEEEC-TTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTC---
T ss_pred             CceEECChhhHHHHHhCCCCCEEEEEEC-CccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCC---
Confidence            4567889999988654 46777777664 46677788888999888643     23 99999999999999999999   


Q ss_pred             CCCCeEEEEeCCCCe--eEEEEEEeehhhhhHhhh
Q 017971          326 SKLPKMVVWDGNENY--LTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       326 ~~~P~~vi~~~~~~y--~~~~~~~~~~~~~~~~~~  358 (363)
                      ...|++++++.+++-  ...++....+.+..|+..
T Consensus        91 ~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~  125 (127)
T 3h79_A           91 SGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ  125 (127)
T ss_dssp             CSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHH
T ss_pred             ccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHh
Confidence            679999999987642  567788889999998865

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.06  E-value=3.1e-05  Score=57.62  Aligned_cols=100  Identities=8%  Similarity=0.100  Sum_probs=80.4

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC----CcEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      .+..+|.+++..... ++++++.|+ .......+.+...+.++++.+.    ++.|+.+|++..+.+++.+++   ...|
T Consensus         6 ~v~~l~~~~~~~~~~-~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v---~~~P   80 (111)
T 3uvt_A            6 TVLALTENNFDDTIA-EGITFIKFY-APWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSV---RGYP   80 (111)
T ss_dssp             CSEECCTTTHHHHHH-SSEEEEEEE-CSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTC---CSSS
T ss_pred             cceEcChhhHHHHhc-CCcEEEEEE-CCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCC---Cccc
Confidence            466788888888666 556666665 4577788889999999998864    499999999999999999999   6799


Q ss_pred             eEEEEeCCCCeeEEEEEEeehhhhhHhhh
Q 017971          330 KMVVWDGNENYLTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       330 ~~vi~~~~~~y~~~~~~~~~~~~~~~~~~  358 (363)
                      +++++...+......+....+.+..|+.+
T Consensus        81 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~  109 (111)
T 3uvt_A           81 TLLLFRGGKKVSEHSGGRDLDSLHRFVLS  109 (111)
T ss_dssp             EEEEEETTEEEEEECSCCSHHHHHHHHHH
T ss_pred             EEEEEeCCcEEEeccCCcCHHHHHHHHHh
Confidence            99999655556677788888888888764

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.06  E-value=2.1e-05  Score=63.57  Aligned_cols=106  Identities=11%  Similarity=0.047  Sum_probs=69.2

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---  105 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---  105 (363)
                      +..+|+....+.++..+.|++-       .+++++|.|| +.||++|....|.+.++.++     .++.+..|.++.   
T Consensus        23 G~~aP~f~l~~~~G~~~~l~~~-------~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-----~~~~vv~is~d~~~~   90 (166)
T 3p7x_A           23 GDFAPDFTVLDNDLNQVTLADY-------AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-----EEGIVLTISADLPFA   90 (166)
T ss_dssp             TSBCCCCEEECTTSCEEEGGGG-------TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-----TTSEEEEEESSCHHH
T ss_pred             CCCCCCeEEEcCCCCEEeHHHh-------CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-----CCCEEEEEECCCHHH
Confidence            4455666666666666666542       4578999999 78999999999999988765     225666565432   


Q ss_pred             --------------------chhhhhhCCcCc------CCEEEEEe-CCEEEe-ec-----CCCCHHHHHHHHHh
Q 017971          106 --------------------YSRLASKQEIDA------FPTLKIFM-HGIPTE-YY-----GPRKAELLVRYLKK  147 (363)
Q Consensus       106 --------------------~~~l~~~~~i~~------~Pt~~~~~-~g~~~~-y~-----g~~~~~~i~~~i~~  147 (363)
                                          +..+++.|++..      .|+.+++. +|+... +.     +..+.+++.+.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A           91 QKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             HHHHHHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             HHHHHHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence                                335566677764      79988885 565432 22     23455677666543

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.06  E-value=4.6e-05  Score=56.41  Aligned_cols=97  Identities=11%  Similarity=0.035  Sum_probs=73.9

Q ss_pred             ChhhHHhhh--cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971          259 NQDTLNLLK--DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG  336 (363)
Q Consensus       259 t~~~~~~l~--~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~  336 (363)
                      +.+++....  ..++++++.|+. ......+.+...+.+++++++++.|+.+|.++.+.+++.+|+   ...|+++++..
T Consensus         8 ~~~~~~~~~~~~~~~~v~v~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~   83 (107)
T 1gh2_A            8 SDPDFQPELSGAGSRLAVVKFTM-RGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNI---SATPTFQFFRN   83 (107)
T ss_dssp             SGGGHHHHHHHTTTSCEEEEEEC-SSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTC---CSSSEEEEEET
T ss_pred             CHHHHHHHHHhCCCCEEEEEEEC-CCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCC---CcccEEEEEEC
Confidence            456777655  456777777664 467778888999999999997899999999999999999999   67999999954


Q ss_pred             CCCeeEEEEEEeehhhhhHhhhhh
Q 017971          337 NENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       337 ~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ........|.. ..++..++..+|
T Consensus        84 G~~~~~~~G~~-~~~l~~~l~~~l  106 (107)
T 1gh2_A           84 KVRIDQYQGAD-AVGLEEKIKQHL  106 (107)
T ss_dssp             TEEEEEEESSC-HHHHHHHHHHHH
T ss_pred             CeEEEEEeCCC-HHHHHHHHHHhc
Confidence            43344555633 455888887765

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.04  E-value=4.5e-06  Score=60.01  Aligned_cols=57  Identities=19%  Similarity=0.391  Sum_probs=45.1

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc--cchhhhhhC-CcCcCCEEEEEeCCEEE
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--KYSRLASKQ-EIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~-~i~~~Pt~~~~~~g~~~  130 (363)
                      .++.|+++||++|++..+.+++..         +.+..+|.+  ..+++.+.+ ++.++|+++  .+|+.+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~---------i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~i   66 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG---------VKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYHV   66 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT---------CCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEEC
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC---------CCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEEE
Confidence            467899999999999998887642         556778887  567788888 999999985  477643

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.04  E-value=4.3e-05  Score=60.85  Aligned_cols=103  Identities=9%  Similarity=0.100  Sum_probs=79.3

Q ss_pred             CCcccCC-hhhHHhhhcC--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          253 PLSVPIN-QDTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       253 p~~~~lt-~~~~~~l~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      ..+.+++ .+++..+...  ++++++.|+. ......+.+...+.+++++++++.|+.+|+++.+.+++.+|+   ...|
T Consensus        12 ~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a-~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~P   87 (153)
T 2wz9_A           12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWA-PWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEI---SSVP   87 (153)
T ss_dssp             CCSEEECSHHHHHHHHHHTTTSCEEEEEEC-TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTC---CSSS
T ss_pred             CCeEEcCCHHHHHHHHHhcCCCeEEEEEEC-CCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCC---CCCC
Confidence            3455555 4667665554  6777777764 467778889999999999998899999999999999999999   6799


Q ss_pred             eEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++++ +|+. ....+ ...+.+..|+..+|.
T Consensus        88 t~~~~~-~G~~~~~~~G-~~~~~l~~~i~~~l~  118 (153)
T 2wz9_A           88 TFLFFK-NSQKIDRLDG-AHAPELTKKVQRHAS  118 (153)
T ss_dssp             EEEEEE-TTEEEEEEES-SCHHHHHHHHHHHSC
T ss_pred             EEEEEE-CCEEEEEEeC-CCHHHHHHHHHHHhc
Confidence            999999 7653 33444 456778888888775

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.04  E-value=2.7e-05  Score=64.34  Aligned_cols=89  Identities=18%  Similarity=0.103  Sum_probs=63.3

Q ss_pred             CCCeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------------------------chhhhhh
Q 017971           59 SFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------------------------YSRLASK  112 (363)
Q Consensus        59 ~~~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~  112 (363)
                      .+++++|.||+ .||+.|....|.+.++.+++++.+  +.+..|.++.                         +..+++.
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~  106 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN  106 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHH
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHH
Confidence            45899999995 999999999999999998887543  6777666542                         1235566


Q ss_pred             CCcC------cCCEEEEEe-CCEEEe-ecCC----CCHHHHHHHHHhhc
Q 017971          113 QEID------AFPTLKIFM-HGIPTE-YYGP----RKAELLVRYLKKFV  149 (363)
Q Consensus       113 ~~i~------~~Pt~~~~~-~g~~~~-y~g~----~~~~~i~~~i~~~~  149 (363)
                      |++.      ..|+.+++. +|+... +.|.    ++.+++.+.+....
T Consensus       107 ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          107 FDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            7776      369999986 565443 4443    35777877776553

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.03  E-value=5.4e-05  Score=56.48  Aligned_cols=102  Identities=11%  Similarity=0.118  Sum_probs=77.1

Q ss_pred             CCcccCChhhHHhhhc--CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEecc-CchhHHhhcCCCCCCCCC
Q 017971          253 PLSVPINQDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK-QFADFADTFEANKKSKLP  329 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~-~~~~~~~~~gi~~~~~~P  329 (363)
                      ..+.+++.+++.....  .++++++.|+. ......+.+...+.+++++++++.|+.+|.+ ..+.+++.+|+   ...|
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vlv~f~a-~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v---~~~P   80 (111)
T 2pu9_C            5 GKVTEVNKDTFWPIVKAAGDKPVVLDMFT-QWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGI---RVVP   80 (111)
T ss_dssp             TSEEEECTTTHHHHHTTCTTSCEEEEEEC-TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCC---SBSS
T ss_pred             CccEEechHHHHHHHHhcCCCEEEEEEEC-CcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCC---Ceee
Confidence            3466788888887554  46777777764 4677778889999999999989999999998 67889999999   6789


Q ss_pred             eEEEEeCCCC-eeEEEEEEeehhhhhHhhhhh
Q 017971          330 KMVVWDGNEN-YLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       330 ~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +++++ .+|+ .....+.. .+.+..++..++
T Consensus        81 t~~~~-~~G~~~~~~~G~~-~~~l~~~l~~~~  110 (111)
T 2pu9_C           81 TFKIL-KENSVVGEVTGAK-YDKLLEAIQAAR  110 (111)
T ss_dssp             EEEEE-SSSSEEEEEESSC-HHHHHHHHHHHH
T ss_pred             EEEEE-eCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence            97666 5554 33445543 677888877665

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.03  E-value=3e-05  Score=66.79  Aligned_cols=70  Identities=14%  Similarity=0.256  Sum_probs=51.6

Q ss_pred             CCCeEEEEEE-CCCChhhh-hHHHHHHHHHHHhhcCCCCe-EEEEEeCcc----------------------chhhhhhC
Q 017971           59 SFDYILVDFY-APWCGHCK-RLAPQLDEAAPILAKLKEPI-VIAKVDADK----------------------YSRLASKQ  113 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~-~~~~~~~~~a~~~~~~~~~v-~~~~vd~~~----------------------~~~l~~~~  113 (363)
                      ++++++|.|| ++||++|+ ...|.+.++.+++++.+  + .+..|+.+.                      +..+++.|
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~  109 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG--VDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGM  109 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHh
Confidence            4578999999 99999999 99999999998887654  6 566665432                      23467777


Q ss_pred             CcC-----------cCCEEEEEeCCEEE
Q 017971          114 EID-----------AFPTLKIFMHGIPT  130 (363)
Q Consensus       114 ~i~-----------~~Pt~~~~~~g~~~  130 (363)
                      |+.           ..|+.+++++|+..
T Consensus       110 gv~~~~~~~g~~~~~~p~t~li~~G~i~  137 (241)
T 1nm3_A          110 GMLVGKEDLGFGKRSWRYSMLVKNGVVE  137 (241)
T ss_dssp             TCEEECTTTTCCEEECCEEEEEETTEEE
T ss_pred             CceeecccccCcccceeEEEEEECCEEE
Confidence            775           34776666777654

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=98.02  E-value=8.7e-06  Score=64.47  Aligned_cols=81  Identities=19%  Similarity=0.264  Sum_probs=60.4

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe------------------------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD------------------------------------  102 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd------------------------------------  102 (363)
                      +.+.+++.|+.++|++|+++.+.++++.        ++.+.-.+                                    
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l~--------~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~   84 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKMT--------DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKF   84 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTCC--------SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhcC--------ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            4578999999999999999999976541        13332211                                    


Q ss_pred             ------C----ccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhcC
Q 017971          103 ------A----DKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       103 ------~----~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                            |    +++..+++++||.++||+++ .+|+  ...|..+.+.|.+++.+...
T Consensus        85 ~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~--~i~G~~~~~~l~~~i~~~~~  139 (147)
T 3gv1_A           85 PVGGSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR--TQSGYSPMPQLEEIIRKNQQ  139 (147)
T ss_dssp             CTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC--EEESCCCTTHHHHHHHHTSC
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE--EeeCCCCHHHHHHHHHHHHH
Confidence                  1    12456788899999999998 6676  36688888999998887654

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.01  E-value=5.4e-05  Score=57.09  Aligned_cols=100  Identities=13%  Similarity=0.227  Sum_probs=75.6

Q ss_pred             cccCCh-hhHHhhhc--CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          255 SVPINQ-DTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       255 ~~~lt~-~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      +.+++. +++.....  .++++++.|+. ......+.+...+.++++++ ++.|+.+|.++.+.+++.+|+   ...|++
T Consensus        15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a-~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v---~~~Pt~   89 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQHKNKLVVVDFFA-TWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNI---SAMPTF   89 (117)
T ss_dssp             EEECCSTTHHHHHHHHTTTSCEEEEEEC-TTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTC---CSSSEE
T ss_pred             eEEeCCHHHHHHHHHhCCCCEEEEEEEC-CCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCC---CccceE
Confidence            456665 67766544  56777777664 46777888899999999988 899999999999999999999   679999


Q ss_pred             EEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          332 VVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       332 vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++++.........+ ...+.+..++..+|
T Consensus        90 ~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           90 IAIKNGEKVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             EEEETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             EEEeCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence            99853333444555 56677888877654

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.01  E-value=1.3e-05  Score=62.73  Aligned_cols=103  Identities=11%  Similarity=0.134  Sum_probs=81.4

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC----cEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~----~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      .+..++.+++......++++++.|+ .......+.+...+.++++.+++    +.|+.+|+.+...+++.+++   ...|
T Consensus        18 ~v~~l~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v---~~~P   93 (140)
T 2dj1_A           18 GVWVLNDGNFDNFVADKDTVLLEFY-APWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDV---SGYP   93 (140)
T ss_dssp             TEEECCTTTHHHHHTTCSEEEEEEC-CTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTC---CSSS
T ss_pred             CCEEcChHhHHHHHhcCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCC---CccC
Confidence            3667788888887777777776665 44667777788888888876543    99999999999999999999   6799


Q ss_pred             eEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++++ .+|+.....+....+.+..|+...|.
T Consensus        94 t~~~~-~~G~~~~~~g~~~~~~l~~~l~~~~~  124 (140)
T 2dj1_A           94 TIKIL-KKGQAVDYDGSRTQEEIVAKVREVSQ  124 (140)
T ss_dssp             EEEEE-ETTEEEECCSCCCHHHHHHHHHHHHS
T ss_pred             eEEEE-ECCcEEEcCCCCCHHHHHHHHHHhcC
Confidence            99999 45666667788888899999988775

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.00  E-value=5.7e-05  Score=57.60  Aligned_cols=105  Identities=10%  Similarity=0.114  Sum_probs=78.9

Q ss_pred             CCCcccCChhhHHhhhc--CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEecc-CchhHHhhcCCCCCCCC
Q 017971          252 LPLSVPINQDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK-QFADFADTFEANKKSKL  328 (363)
Q Consensus       252 ~p~~~~lt~~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~-~~~~~~~~~gi~~~~~~  328 (363)
                      ...+.+++.+++.....  .++++++.|+ .......+.+...+.+++++++++.|+.+|.. +.+.+++.+|+   ...
T Consensus        17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v---~~~   92 (124)
T 1faa_A           17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGI---RVV   92 (124)
T ss_dssp             TTSEEEECTTTHHHHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCC---SSS
T ss_pred             CCceEEecchhHHHHHHhcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCC---Cee
Confidence            34466788888876543  5677777776 45677788889999999999999999999998 57889999999   678


Q ss_pred             CeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          329 PKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       329 P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      |+++++..........+.. .+++..++..+++
T Consensus        93 Pt~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~~  124 (124)
T 1faa_A           93 PTFKILKENSVVGEVTGAK-YDKLLEAIQAARS  124 (124)
T ss_dssp             SEEEEEETTEEEEEEESSC-HHHHHHHHHHHTC
T ss_pred             eEEEEEeCCcEEEEEcCCC-HHHHHHHHHHhhC
Confidence            9988875433334455554 6788888877653

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.00  E-value=9.4e-06  Score=61.20  Aligned_cols=68  Identities=15%  Similarity=0.368  Sum_probs=47.5

Q ss_pred             hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc----hh----hhhhCCcCcCCEEE
Q 017971           51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SR----LASKQEIDAFPTLK  122 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~----l~~~~~i~~~Pt~~  122 (363)
                      +.+++.++.++  ++.|+++||++|++..+.+.+..         +.+..+|.+..    ++    +.+..|..++|++ 
T Consensus        10 ~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i-   77 (113)
T 3rhb_A           10 ESIRKTVTENT--VVIYSKTWCSYCTEVKTLFKRLG---------VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV-   77 (113)
T ss_dssp             HHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHHTT---------CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE-
T ss_pred             HHHHHHHhcCC--EEEEECCCChhHHHHHHHHHHcC---------CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE-
Confidence            44566666655  66799999999999998887642         44456676542    33    4555699999998 


Q ss_pred             EEeCCEEEe
Q 017971          123 IFMHGIPTE  131 (363)
Q Consensus       123 ~~~~g~~~~  131 (363)
                       |.+|+.+.
T Consensus        78 -fi~g~~ig   85 (113)
T 3rhb_A           78 -FVCGKHIG   85 (113)
T ss_dssp             -EETTEEEE
T ss_pred             -EECCEEEc
Confidence             55786553

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.00  E-value=5.1e-05  Score=64.52  Aligned_cols=106  Identities=13%  Similarity=0.153  Sum_probs=88.1

Q ss_pred             CCCcccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          252 LPLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       252 ~p~~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      .+.+..+|.+++.. +...++++++.|+.+ -....+.+...+.++++++++ +.|+.+|++..+.+++.+++   ...|
T Consensus        11 ~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~P   86 (222)
T 3dxb_A           11 SDKIIHLTDDSFDTDVLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIP   86 (222)
T ss_dssp             SCCCEECCTTTHHHHHTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTC---CSBS
T ss_pred             CCCceeCCHHHHHHHHHhcCCEEEEEEECC-cCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCC---CcCC
Confidence            44567889999987 566777888877744 677788899999999999988 99999999999999999999   6899


Q ss_pred             eEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++++..+......+....+.+..|+..+|+
T Consensus        87 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  118 (222)
T 3dxb_A           87 TLLLFKNGEVAATKVGALSKGQLKEFLDANLA  118 (222)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             EEEEEECCeEEEEeccccChHHHHHHHHhhcc
Confidence            99999754455677788888999999988775

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=97.99  E-value=3.2e-05  Score=62.81  Aligned_cols=104  Identities=13%  Similarity=0.037  Sum_probs=66.5

Q ss_pred             CCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-----
Q 017971           32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----  105 (363)
Q Consensus        32 ~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----  105 (363)
                      ..|+....+.++..+.+++-       .+++++|.|| +.||+.|....|.+.++.+++    .++.+..|.++.     
T Consensus        26 ~~P~f~l~~~~G~~~~l~~~-------~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~----~~v~vv~Is~d~~~~~~   94 (171)
T 2yzh_A           26 RAPEAVVVTKDLQEKIVGGA-------KDVVQVIITVPSLDTPVCETETKKFNEIMAGM----EGVDVTVVSMDLPFAQK   94 (171)
T ss_dssp             BCCCEEEEETTSCEEEESSC-------CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC----TTEEEEEEESSCHHHHH
T ss_pred             cCCceEEECCCCCEeeHHHh-------CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc----CCceEEEEeCCCHHHHH
Confidence            34444444455555555432       4578999999 899999999999999988766    236666665432     


Q ss_pred             ------------------chhhhhhCCcCc---------CCEEEEEe-CCEEEe-ecC-----CCCHHHHHHHHHh
Q 017971          106 ------------------YSRLASKQEIDA---------FPTLKIFM-HGIPTE-YYG-----PRKAELLVRYLKK  147 (363)
Q Consensus       106 ------------------~~~l~~~~~i~~---------~Pt~~~~~-~g~~~~-y~g-----~~~~~~i~~~i~~  147 (363)
                                        +..+ +.|++..         .|+.+++. +|+... +.|     ..+.+++.+.+++
T Consensus        95 ~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~  169 (171)
T 2yzh_A           95 RFCESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKE  169 (171)
T ss_dssp             HHHHHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHH
T ss_pred             HHHHHcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHh
Confidence                              2345 6666642         58888886 565442 432     3445677776654

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=97.99  E-value=2.7e-05  Score=63.13  Aligned_cols=67  Identities=13%  Similarity=0.100  Sum_probs=45.2

Q ss_pred             CCCCcccccc-CCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhh-HHHHHHHHHHHhhcCCCCe-EEEEEeCc
Q 017971           30 GLSSEEETKF-KIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKR-LAPQLDEAAPILAKLKEPI-VIAKVDAD  104 (363)
Q Consensus        30 ~~~~~~~~~~-~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~-~~~~~~~~a~~~~~~~~~v-~~~~vd~~  104 (363)
                      +..+|+.... +.++..+.|++     .+ ++++++|.|| +.||+.|+. ..|.+.++.+++++.+  + .+..|+.+
T Consensus         6 G~~aP~f~l~~~~~G~~v~L~d-----~~-~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d   76 (167)
T 2wfc_A            6 GDKLPAVTVFGATPNDKVNMAE-----LF-AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG--VDIIACMAVN   76 (167)
T ss_dssp             TCBCCCCEEESSSTTCEEEHHH-----HT-TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT--CCEEEEEESS
T ss_pred             CCcCCCcEeecCCCCcEEeHHH-----Hh-CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCC
Confidence            3445555554 45555554432     21 4567888886 999999999 9999999998887643  6 66666543

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=97.98  E-value=7.9e-05  Score=55.25  Aligned_cols=93  Identities=11%  Similarity=0.180  Sum_probs=69.4

Q ss_pred             hhhHHhh-hcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971          260 QDTLNLL-KDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN  337 (363)
Q Consensus       260 ~~~~~~l-~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~  337 (363)
                      .+++... ... ++++++-|+ ..-....+.+...+.++++.++++.|+.+|+++++++++.||+   ...|+++++...
T Consensus         8 ~~~f~~~l~~~~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V---~~~PT~~~~~~G   83 (105)
T 3zzx_A            8 QEDFTKQLNEAGNKLVVIDFY-ATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQI---ACMPTFLFMKNG   83 (105)
T ss_dssp             HHHHHHHHHHTTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTC---CBSSEEEEEETT
T ss_pred             HHHHHHHHHhcCCCEEEEEEE-CCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCC---CeecEEEEEECC
Confidence            4566653 333 345555555 4467777889999999999999999999999999999999999   679999999754


Q ss_pred             CCeeEEEEEEeehhhhhHhh
Q 017971          338 ENYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       338 ~~y~~~~~~~~~~~~~~~~~  357 (363)
                      .......| ...+++..|+.
T Consensus        84 ~~v~~~~G-~~~~~l~~~i~  102 (105)
T 3zzx_A           84 QKLDSLSG-ANYDKLLELVE  102 (105)
T ss_dssp             EEEEEEES-CCHHHHHHHHH
T ss_pred             EEEEEEeC-cCHHHHHHHHH
Confidence            44555566 35667777664

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=97.98  E-value=3.8e-05  Score=64.80  Aligned_cols=88  Identities=14%  Similarity=0.222  Sum_probs=63.7

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      .+++++|.|| ++||++|....|.+.++.+++++.  .+.+..|.++.                            +..+
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~--~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~  124 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI--NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQI  124 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHH
Confidence            4579999999 999999999999999999988653  37777666542                            1245


Q ss_pred             hhhCCcC------cCCEEEEEe-CCEEEe-ecCC----CCHHHHHHHHHhh
Q 017971          110 ASKQEID------AFPTLKIFM-HGIPTE-YYGP----RKAELLVRYLKKF  148 (363)
Q Consensus       110 ~~~~~i~------~~Pt~~~~~-~g~~~~-y~g~----~~~~~i~~~i~~~  148 (363)
                      ++.|++.      ..|+.+++. +|+... +.|.    ++.+++.+.+...
T Consensus       125 ~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l  175 (211)
T 2pn8_A          125 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  175 (211)
T ss_dssp             HHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            6667774      689999986 565442 3332    4677787777654

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=97.97  E-value=5.8e-05  Score=56.26  Aligned_cols=100  Identities=9%  Similarity=0.136  Sum_probs=76.3

Q ss_pred             ccC-ChhhHHhhhcC----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC-CcEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          256 VPI-NQDTLNLLKDD----KRKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       256 ~~l-t~~~~~~l~~~----~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~-~~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      .++ +.+++......    ++++++.|+. ......+.+...+.+++..++ ++.|+.+|.+..+.+++.+|+   ...|
T Consensus         5 ~~i~~~~~~~~~l~~~~~~~~~~vv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~P   80 (112)
T 1ep7_A            5 IVIDSKAAWDAQLAKGKEEHKPIVVDFTA-TWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGI---TAMP   80 (112)
T ss_dssp             EEECSHHHHHHHHHHHHHHTCCEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTC---CBSS
T ss_pred             EEecCHHHHHHHHHhhcccCCeEEEEEEC-CCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCC---Cccc
Confidence            344 34566654443    6777777764 467778888999999999998 499999999999999999999   6789


Q ss_pred             eEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++++. +|+ .....+. ..+.+..|+..+|.
T Consensus        81 t~~~~~-~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           81 TFHVYK-DGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEE-TTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             EEEEEE-CCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence            998885 554 4455665 77889998887763

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.97  E-value=5.7e-05  Score=61.56  Aligned_cols=83  Identities=18%  Similarity=0.191  Sum_probs=59.0

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------------  105 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------------------  105 (363)
                      ..+..++.|+..+|++|+.+.|.+.++.+++.+ .+++.+...+..-                                 
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~  104 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVK-SGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFAT  104 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH-TTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhh-CCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHc
Confidence            346789999999999999999999988877621 1235555443310                                 


Q ss_pred             ---------------------------------chhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHH
Q 017971          106 ---------------------------------YSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLK  146 (363)
Q Consensus       106 ---------------------------------~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~  146 (363)
                                                       +..+++++||.++|++++  +|+.  +.|..+.+.+.+.+.
T Consensus       105 ~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~~--~~G~~~~~~l~~~i~  174 (175)
T 1z6m_A          105 QDEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI--FDESVTEEELRGYIE  174 (175)
T ss_dssp             HHHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE--ECTTCCHHHHHHHHT
T ss_pred             ChhhccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCEE--ccCCCCHHHHHHHhc
Confidence                                             112356679999999665  7764  468888888887764

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.97  E-value=1.5e-05  Score=58.57  Aligned_cols=60  Identities=12%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC-----CcCcCCEEEEEeCCEEE
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ-----EIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~-----~i~~~Pt~~~~~~g~~~  130 (363)
                      .+.-++.|+++||++|++..+.+++..         +.+..+|.+.+++..+.+     +..++|++  |.+|+.+
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~---------i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~i   78 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRKG---------VEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHI   78 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHHT---------CCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHCC---------CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEE
Confidence            356677899999999999999888652         556778888877655544     88999988  4577654

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=97.96  E-value=5.7e-05  Score=65.07  Aligned_cols=88  Identities=13%  Similarity=0.229  Sum_probs=64.3

Q ss_pred             CCCeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      .+++++|.||+ .||+.|....|.+.++.+++++.+  +.+..|.++.                            +.++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~g--v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v  153 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN--TEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQI  153 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHH
Confidence            45899999999 999999999999999999987543  7777776652                            1346


Q ss_pred             hhhCCcC------cCCEEEEEe-CCEEEe-ecC----CCCHHHHHHHHHhh
Q 017971          110 ASKQEID------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKKF  148 (363)
Q Consensus       110 ~~~~~i~------~~Pt~~~~~-~g~~~~-y~g----~~~~~~i~~~i~~~  148 (363)
                      ++.|++.      .+|+.+++. +|+... +.+    .+..+++.+.+...
T Consensus       154 ~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          154 SKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            7778887      689999985 555432 222    35567777766543

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=97.96  E-value=8.4e-05  Score=55.90  Aligned_cols=102  Identities=10%  Similarity=0.182  Sum_probs=77.1

Q ss_pred             cccC-ChhhHHhhhcC----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          255 SVPI-NQDTLNLLKDD----KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       255 ~~~l-t~~~~~~l~~~----~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      +.++ +.++++.....    ++++++.|+. ......+.+...+.+++++++++.|+.+|.+..+.+++.+|+   ...|
T Consensus         8 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~P   83 (118)
T 2vm1_A            8 VIACHTKQEFDTHMANGKDTGKLVIIDFTA-SWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNV---EAMP   83 (118)
T ss_dssp             EEECCSHHHHHHHHHHHHHHTCCEEEEEEC-TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTC---CSBS
T ss_pred             eEEecCHHHHHHHHHhcccCCCEEEEEEEC-CCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCC---CcCc
Confidence            3444 45666654432    6777777764 467778888999999999998999999999998999999999   6799


Q ss_pred             eEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++++.........+ ...+.+..++..+|+
T Consensus        84 t~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           84 TFLFIKDGEKVDSVVG-GRKDDIHTKIVALMG  114 (118)
T ss_dssp             EEEEEETTEEEEEEES-CCHHHHHHHHHHHHC
T ss_pred             EEEEEeCCeEEEEecC-CCHHHHHHHHHHHhc
Confidence            9999854333444555 467888888888775

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.95  E-value=2e-05  Score=68.15  Aligned_cols=91  Identities=14%  Similarity=0.189  Sum_probs=67.0

Q ss_pred             hHcCCCe-EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------------ch
Q 017971           56 AISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YS  107 (363)
Q Consensus        56 ~l~~~~~-~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------------~~  107 (363)
                      .+.+++. +|+.|+++||+.|....+.+.++.+++++.+  +.+..|+++.                           +.
T Consensus        29 ~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~g--v~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~  106 (249)
T 3a2v_A           29 YVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQG  106 (249)
T ss_dssp             HHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTS
T ss_pred             HhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCC--cEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCch
Confidence            3324454 5667899999999999999999999987653  8888888753                           34


Q ss_pred             hhhhhCCcC-------cCCEEEEEe-CCEEEe-ecC----CCCHHHHHHHHHhh
Q 017971          108 RLASKQEID-------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKKF  148 (363)
Q Consensus       108 ~l~~~~~i~-------~~Pt~~~~~-~g~~~~-y~g----~~~~~~i~~~i~~~  148 (363)
                      ++++.|++.       .+|+++++. +|+... +.|    .++.++|.+.+...
T Consensus       107 ~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A          107 TVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             HHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence            578889987       899999985 565432 223    25778888777654

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=97.95  E-value=2e-05  Score=61.37  Aligned_cols=104  Identities=13%  Similarity=0.114  Sum_probs=83.7

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVEDET--EEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      .+.++|.++++....++.++++.|..+ -  ....+.+..++.++|+++.+  +.|+.||.++++++...||+   ...|
T Consensus        18 g~~~~t~~~F~~~v~~~~~vlVdF~a~-~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV---~sIP   93 (140)
T 2qgv_A           18 GWTPVSESRLDDWLTQAPDGVVLLSSD-PKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGA---FRFP   93 (140)
T ss_dssp             TCEECCHHHHHHHHHTCSSEEEEECCC-TTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTC---CSSS
T ss_pred             CCccCCHHHHHHHHhCCCCEEEEEeCC-cccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCC---ccCC
Confidence            456889999987656777887755422 2  33445788999999999975  89999999999999999999   7899


Q ss_pred             eEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++|+....-....|-..++.+..++..+|.
T Consensus        94 TlilFk~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           94 ATLVFTGGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence            99999887777777787888888888887764

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.95  E-value=2.6e-06  Score=71.16  Aligned_cols=44  Identities=18%  Similarity=0.394  Sum_probs=38.0

Q ss_pred             CCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCccc
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKY  106 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~  106 (363)
                      .++++|.||+.||+||+++.|.+   +++++.+.+   ++.|.+++.+.+
T Consensus       113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~---~v~~~~~~v~~~  159 (197)
T 1un2_A          113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE---GVKMTKYHVNFM  159 (197)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT---TCCEEEEECSSS
T ss_pred             CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC---CCEEEEeccCcC
Confidence            47899999999999999999999   888877643   489999998764

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=97.95  E-value=4.4e-05  Score=64.32  Aligned_cols=104  Identities=9%  Similarity=0.093  Sum_probs=86.5

Q ss_pred             CCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          253 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      +.+..++..++......++++++.|+.+ .......+...+.++++++++ +.|+.||++..+.+++.+|+   ...|++
T Consensus        97 ~~v~~l~~~~f~~~~~~~~~vlv~F~a~-wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~  172 (210)
T 3apq_A           97 PEIITLERREFDAAVNSGELWFVNFYSP-GCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGV---NSYPSL  172 (210)
T ss_dssp             TTSEECCHHHHHHHHHHSCCEEEEEECT-TCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred             CceEEecHHHHHHHHccCCcEEEEEeCC-CChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCC---CcCCeE
Confidence            3466788888888767778888877754 677788899999999999887 99999999999999999999   679999


Q ss_pred             EEEeCCC-CeeEEEEEEeehhhhhHhhhhhc
Q 017971          332 VVWDGNE-NYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       332 vi~~~~~-~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++ .+| ......|....+.+..|+...|+
T Consensus       173 ~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~  202 (210)
T 3apq_A          173 FIF-RSGMAAVKYNGDRSKESLVAFAMQHVR  202 (210)
T ss_dssp             EEE-CTTSCCEECCSCCCHHHHHHHHHHHHH
T ss_pred             EEE-ECCCceeEecCCCCHHHHHHHHHHhCc
Confidence            999 555 46677788888999999988775

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=3.6e-05  Score=58.96  Aligned_cols=101  Identities=12%  Similarity=0.076  Sum_probs=80.6

Q ss_pred             CCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--CcEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          253 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      ..+.+++.+++..+...  ++++.|+ .......+.+...+.+++++++  ++.|+.+|.++.+.+++.+++   ...|+
T Consensus         7 ~~v~~l~~~~f~~~~~~--~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v---~~~Pt   80 (126)
T 1x5e_A            7 GNVRVITDENWRELLEG--DWMIEFY-APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFII---NALPT   80 (126)
T ss_dssp             CSEEECCTTTHHHHTSS--EEEEEEE-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTC---CSSSE
T ss_pred             CccEEecHHHHHHHhCC--CEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCC---cccCE
Confidence            34667888888876543  3554444 5577788888999999998876  499999999999999999999   67999


Q ss_pred             EEEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          331 MVVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       331 ~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++++ .+|+.....+....+.+..|+...+
T Consensus        81 ~~~~-~~G~~~~~~G~~~~~~l~~~l~~~~  109 (126)
T 1x5e_A           81 IYHC-KDGEFRRYQGPRTKKDFINFISDKE  109 (126)
T ss_dssp             EEEE-ETTEEEECCSCCCHHHHHHHHHTCG
T ss_pred             EEEE-eCCeEEEeecCCCHHHHHHHHHHHh
Confidence            9999 5677667777788888999988766

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=97.93  E-value=5.2e-05  Score=57.09  Aligned_cols=98  Identities=12%  Similarity=0.109  Sum_probs=74.2

Q ss_pred             cccCCh-hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          255 SVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       255 ~~~lt~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      +.+++. +.+..+...++++++.|+ .......+.+...+.+++++++++.|+.+|.++.+.+++.+++   ...|++++
T Consensus        14 ~~~~~~~~~~~~~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~~   89 (114)
T 2oe3_A           14 ITKLTNLTEFRNLIKQNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEV---TAMPTFVL   89 (114)
T ss_dssp             SCBCCSHHHHHHHHHHCSEEEEEEE-CTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSBSEEEE
T ss_pred             eeecCCHHHHHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCC---CcccEEEE
Confidence            444443 566666666777777776 4467778888899999999998899999999998999999999   67999998


Q ss_pred             EeCCCC-eeEEEEEEeehhhhhHhhh
Q 017971          334 WDGNEN-YLTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       334 ~~~~~~-y~~~~~~~~~~~~~~~~~~  358 (363)
                      +. +|+ .....+.. .+++..++..
T Consensus        90 ~~-~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           90 GK-DGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EE-TTEEEEEEESSC-HHHHHHHHHT
T ss_pred             Ee-CCeEEEEEeCCC-HHHHHHHHHh
Confidence            84 554 44556655 7777777654

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=97.93  E-value=6.3e-05  Score=56.15  Aligned_cols=100  Identities=16%  Similarity=0.240  Sum_probs=72.3

Q ss_pred             ccCCh-hhHHhhhcC---CCcEEEEEEeCCChhhHHHHHHHHHHHHHh--CCCcEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          256 VPINQ-DTLNLLKDD---KRKIVLAIVEDETEEKSQKLVTTLKAAASA--NRELVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       256 ~~lt~-~~~~~l~~~---~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~--~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      .+++. +++......   ++++++.|+. ......+.+...+.+++++  ++++.|+.+|.+..+.+++.+|+   ...|
T Consensus         3 ~~i~~~~~~~~~~~~~~~~~~~~v~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~P   78 (112)
T 3d6i_A            3 IEINDQEQFTYLTTTAAGDKLIVLYFHT-SWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEI---SAVP   78 (112)
T ss_dssp             EEECCHHHHHHHHTTTTTTCCEEEEEEC-CC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTC---CSSS
T ss_pred             cccCCHHHHHHHHhcccCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCC---Cccc
Confidence            34554 677765543   6777777764 4667778888999999998  55699999999999999999999   6799


Q ss_pred             eEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++++ +|+ .....|. ...++..++..+|.
T Consensus        79 t~~~~~-~G~~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           79 YFIIIH-KGTILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             EEEEEE-TTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred             EEEEEE-CCEEEEEecCC-CHHHHHHHHHHHHh
Confidence            999995 554 3444554 34457887776653

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=97.92  E-value=4.2e-05  Score=58.22  Aligned_cols=102  Identities=10%  Similarity=0.108  Sum_probs=78.7

Q ss_pred             CcccCCh-hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          254 LSVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       254 ~~~~lt~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      .+..++. +++......++++++.|+. ........+...+.++++.+++  +.|+.+|.+..+.+++.+|+   ...|+
T Consensus        16 ~~~~i~~~~~f~~~l~~~k~vvv~f~a-~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v---~~~Pt   91 (121)
T 2j23_A           16 SVQVISSYDQFKQVTGGDKVVVIDFWA-TWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGI---RAMPT   91 (121)
T ss_dssp             CEEECCSHHHHHHHHSSSSCEEEEEEC-TTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTC---CSSSE
T ss_pred             ceEEcCCHHHHHHHHcCCCEEEEEEEC-CCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCC---CcccE
Confidence            3445554 7777766777788777774 4566777888899999988876  99999999999999999999   67999


Q ss_pred             EEEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          331 MVVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       331 ~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +++++.........+. ..+.+..|+..+|
T Consensus        92 ~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           92 FVFFKNGQKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEEETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EEEEECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence            9999643334555665 7788888888766

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.91  E-value=2.5e-05  Score=64.91  Aligned_cols=41  Identities=17%  Similarity=0.389  Sum_probs=32.8

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA  103 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~  103 (363)
                      .++.++.|+++||++|..+.|.+.++.+.+..   ++.+-.+..
T Consensus        22 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~   62 (195)
T 2znm_A           22 GKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS---DAYLRTEHV   62 (195)
T ss_dssp             SSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT---TEEEEEEEC
T ss_pred             CCcEEEEEECCCChhHHHHhHHHHHHHHHCCC---ceEEEEecc
Confidence            47889999999999999999999998876533   366655543

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=97.91  E-value=6.8e-05  Score=55.93  Aligned_cols=97  Identities=10%  Similarity=0.119  Sum_probs=74.1

Q ss_pred             ChhhHHhhhc----CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEE
Q 017971          259 NQDTLNLLKD----DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW  334 (363)
Q Consensus       259 t~~~~~~l~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~  334 (363)
                      +.+++.....    .++++++.|+. ......+.+...+.++++.++++.|+.+|.++.+.+++.+|+   ...|+++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~vv~f~~-~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v---~~~Pt~~~~   86 (113)
T 1ti3_A           11 TVDTWKEHFEKGKGSQKLIVVDFTA-SWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNV---EAMPTFIFL   86 (113)
T ss_dssp             SHHHHHHHHHHHTTSSSEEEEEEEC-SSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHC---SSTTEEEEE
T ss_pred             cHHHHHHHHHHhhhcCCeEEEEEEC-CCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCC---CcccEEEEE
Confidence            4455555333    35666666664 467778888999999999998899999999999999999999   678999999


Q ss_pred             eCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          335 DGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       335 ~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      + +|+ .....+ ...+.+..++..+|.
T Consensus        87 ~-~G~~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           87 K-DGKLVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             E-TTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             e-CCEEEEEEec-CCHHHHHHHHHHhhc
Confidence            5 454 444555 577888888888764

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=97.90  E-value=1.6e-05  Score=59.99  Aligned_cols=103  Identities=8%  Similarity=0.113  Sum_probs=81.0

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC----CcEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      +.+++.+++......++++++.|+.+ .....+.+...+.++++.++    ++.|+.+|+.+.+.+++.+|+   ...|+
T Consensus         9 v~~l~~~~~~~~~~~~~~~lv~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v---~~~Pt   84 (120)
T 1mek_A            9 VLVLRKSNFAEALAAHKYLLVEFYAP-WCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGV---RGYPT   84 (120)
T ss_dssp             EEECCTTTHHHHHHHCSEEEEEEECS-SCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTC---CSSSE
T ss_pred             cEEechhhHHHHHccCCeEEEEEECC-CCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCC---CcccE
Confidence            56788888888777777777777644 56666677788888888765    399999999988899999999   67999


Q ss_pred             EEEEeCCCCe--eEEEEEEeehhhhhHhhhhhc
Q 017971          331 MVVWDGNENY--LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       331 ~vi~~~~~~y--~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++...+..  ....+....+.+..|+...|.
T Consensus        85 ~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           85 IKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             EEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             EEEEeCCCcCCcccccCccCHHHHHHHHHhccC
Confidence            9999644433  677788888899999988775

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=97.88  E-value=0.00014  Score=55.59  Aligned_cols=97  Identities=12%  Similarity=0.106  Sum_probs=73.4

Q ss_pred             ChhhHHhhhc----CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEE
Q 017971          259 NQDTLNLLKD----DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW  334 (363)
Q Consensus       259 t~~~~~~l~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~  334 (363)
                      +.+++.....    .++++++.|+. ......+.+...+.+++++++++.|+.+|.++.+.+++.+|+   ...|+++++
T Consensus        23 ~~~~~~~~l~~~~~~~k~vvv~f~a-~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~Pt~~~~   98 (124)
T 1xfl_A           23 TVETWNEQLQKANESKTLVVVDFTA-SWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAI---QAMPTFMFL   98 (124)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEEC-TTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTC---CSSSEEEEE
T ss_pred             CHHHHHHHHHHhhhcCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCC---CccCEEEEE
Confidence            4455554332    35667666664 567778888999999999998899999999998999999999   679999988


Q ss_pred             eCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          335 DGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       335 ~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      . +|+ .....+ ...+.+..++..+|+
T Consensus        99 ~-~G~~~~~~~G-~~~~~l~~~l~~~l~  124 (124)
T 1xfl_A           99 K-EGKILDKVVG-AKKDELQSTIAKHLA  124 (124)
T ss_dssp             E-TTEEEEEEES-CCHHHHHHHHHHHCC
T ss_pred             E-CCEEEEEEeC-CCHHHHHHHHHHhcC
Confidence            4 554 344455 467788888887764

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=97.87  E-value=9.5e-05  Score=55.15  Aligned_cols=99  Identities=5%  Similarity=0.020  Sum_probs=75.8

Q ss_pred             ccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEe
Q 017971          256 VPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWD  335 (363)
Q Consensus       256 ~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~  335 (363)
                      ..++.+++ .....+++.++.|+ .......+.+...+.+++..++++.|+.+|.+..+.+++.+|+   ...|+++++ 
T Consensus         6 ~~~~~~~f-~~~~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~~~-   79 (110)
T 2l6c_A            6 DITTEAGM-AHFEGLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGF---ERVPTLVFI-   79 (110)
T ss_dssp             BCGGGCSH-HHHTTCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTC---CSSCEEEEE-
T ss_pred             ecCCHHHH-HHHHcCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCC---cccCEEEEE-
Confidence            45666777 44445567766665 4467777888999999999988899999999988999999999   679999999 


Q ss_pred             CCC-CeeEEEEEEeehhhhhHhhhhh
Q 017971          336 GNE-NYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       336 ~~~-~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      .+| ......|....+++..++...+
T Consensus        80 ~~G~~v~~~~G~~~~~~l~~~~~~~~  105 (110)
T 2l6c_A           80 RDGKVAKVFSGIMNPRELQALYASIH  105 (110)
T ss_dssp             ESSSEEEEEESCCCHHHHHHHHHTC-
T ss_pred             ECCEEEEEEcCCCCHHHHHHHHHHHh
Confidence            455 4556667777888888877654

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=97.86  E-value=1.8e-05  Score=62.27  Aligned_cols=104  Identities=11%  Similarity=0.087  Sum_probs=69.8

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeCC-ChhhHHHHHHHHHHHHHhCCCcE--EEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRELV--FCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~a~~~~~~~--f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      .+..++.++++.....+...+++|..+- .....+.+...+.+++++++++.  |+.||.++.+.+++.||+   ...|+
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V---~~iPT   94 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNV---RRFPA   94 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTC---CSSSE
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCC---CcCCe
Confidence            5677888888886665556655553221 13445677888999999984488  999999999999999999   68999


Q ss_pred             EEEEeCCC-CeeEEEEEEeehhhhhHhhhhhc
Q 017971          331 MVVWDGNE-NYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       331 ~vi~~~~~-~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++ .+| ......|....+.+..++..+|+
T Consensus        95 ~~~f-k~G~~v~~~~G~~~~~~l~~~i~~~l~  125 (142)
T 2es7_A           95 TLVF-TDGKLRGALSGIHPWAELLTLMRSIVD  125 (142)
T ss_dssp             EEEE-SCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             EEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            9999 455 45567777778889999988875

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=97.84  E-value=4.7e-05  Score=58.55  Aligned_cols=103  Identities=12%  Similarity=0.122  Sum_probs=77.4

Q ss_pred             CCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          252 LPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       252 ~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      .|.+...+.+.+......++++++.|+. ......+.+...+.++++++++ +.|+.+|.+..+.+++.+|+   ...|+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~vlv~F~a-~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~Pt   99 (128)
T 3ul3_B           24 VPRLQQNGSNIINGVNMKNTVIVLYFFA-KWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSV---KSLPT   99 (128)
T ss_dssp             --CCCCCCCSSSSBTTSCCSEEEEEEEC-TTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTC---CSSSE
T ss_pred             CCccccCCccHHHHHHccCCEEEEEEEC-CCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC---CCcCE
Confidence            3444444455555555667777777764 4677788889999999998875 99999999999999999999   67999


Q ss_pred             EEEEeCCCCeeEEEEEEeehhhhhHhhh
Q 017971          331 MVVWDGNENYLTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       331 ~vi~~~~~~y~~~~~~~~~~~~~~~~~~  358 (363)
                      +++++..+......+....+.+..|+.+
T Consensus       100 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          100 IILLKNKTMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EEEEETTEEEEEESSCCCHHHHHHHHTT
T ss_pred             EEEEECCEEEEEecCCCCHHHHHHHHHh
Confidence            9999544445667777788888887754

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.84  E-value=3.3e-05  Score=54.23  Aligned_cols=67  Identities=12%  Similarity=0.183  Sum_probs=47.5

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCcCcCCEEEEEeCCEEEeecCCCCHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTLKIFMHGIPTEYYGPRKAE  139 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~  139 (363)
                      ++.|+++||++|++..+.+.+.     +    +.+..+|.+.++.    +.+.+++.++|+++  .+|+.+.  |   .+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~----i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i~--g---~~   66 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-----G----VSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHIG--G---YD   66 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----T----CCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEEE--S---HH
T ss_pred             EEEEECCCChhHHHHHHHHHHC-----C----CCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe--C---HH
Confidence            5779999999999998888764     1    5566777776543    56678999999984  4776542  2   34


Q ss_pred             HHHHHHH
Q 017971          140 LLVRYLK  146 (363)
Q Consensus       140 ~i~~~i~  146 (363)
                      .|.+++.
T Consensus        67 ~i~~~~~   73 (82)
T 1fov_A           67 DLYALDA   73 (82)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5655554

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=97.84  E-value=4.5e-05  Score=61.55  Aligned_cols=66  Identities=15%  Similarity=0.162  Sum_probs=48.2

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY  106 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~  106 (363)
                      +...|+....+.++..+.|++-       .+++++|.|| +.||++|....|.+.++.+++ .   ++.+..|.++..
T Consensus        20 G~~~P~f~l~~~~G~~v~l~~~-------~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~---~v~vv~Is~d~~   86 (165)
T 1q98_A           20 GEIVENFILVGNDLADVALNDF-------ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S---NTIVLCISADLP   86 (165)
T ss_dssp             TCBCCCCEEECTTSCEEEGGGG-------TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T---TEEEEEEESSCH
T ss_pred             CCCCCCeEEECCCCCEEehHHh-------CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-C---CCEEEEEeCCCH
Confidence            3445555555556666665432       4579999999 899999999999999998877 2   388888887543

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=97.80  E-value=5.3e-05  Score=57.39  Aligned_cols=103  Identities=12%  Similarity=0.132  Sum_probs=81.2

Q ss_pred             CCcccCChhhHHhh-hcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC------CcEEEEEeccCchhHHhhcCCCCC
Q 017971          253 PLSVPINQDTLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR------ELVFCYVGIKQFADFADTFEANKK  325 (363)
Q Consensus       253 p~~~~lt~~~~~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~------~~~f~~vd~~~~~~~~~~~gi~~~  325 (363)
                      +.+.+++.+++... ...++++++.|+.+ .....+.+...+.+++++++      ++.|+.+|++..+ +++  ++   
T Consensus         7 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v---   79 (121)
T 2djj_A            7 GPVTVVVAKNYNEIVLDDTKDVLIEFYAP-WCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EI---   79 (121)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECS-SCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CC---
T ss_pred             CCeEEecccCHHHHhhcCCCCEEEEEECC-CCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--cc---
Confidence            34677888888876 35667787777754 66777888889999998875      4999999998754 444  77   


Q ss_pred             CCCCeEEEEeCCCC--eeEEEEEEeehhhhhHhhhhhcC
Q 017971          326 SKLPKMVVWDGNEN--YLTVSINVLKTRVCFFMLTLLQF  362 (363)
Q Consensus       326 ~~~P~~vi~~~~~~--y~~~~~~~~~~~~~~~~~~~~~~  362 (363)
                      ...|++++++.+|+  .....+....+.+..|+...+.+
T Consensus        80 ~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (121)
T 2djj_A           80 QGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY  118 (121)
T ss_dssp             SSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSS
T ss_pred             CcCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCc
Confidence            67899999998876  67778888889999999988865

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.80  E-value=5.6e-05  Score=55.83  Aligned_cols=72  Identities=17%  Similarity=0.121  Sum_probs=48.6

Q ss_pred             CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-----hhhh----hhCCcCcCCEEEEEeCCEEEe
Q 017971           61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----SRLA----SKQEIDAFPTLKIFMHGIPTE  131 (363)
Q Consensus        61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----~~l~----~~~~i~~~Pt~~~~~~g~~~~  131 (363)
                      +..++.|+++||++|++..+.+++..         +.+-.+|.+..     +++.    +..+..++|++++ .+|+   
T Consensus        21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~---------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i-~~~~---   87 (103)
T 3nzn_A           21 RGKVIMYGLSTCVWCKKTKKLLTDLG---------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII-NDEK---   87 (103)
T ss_dssp             CSCEEEEECSSCHHHHHHHHHHHHHT---------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE-TTTE---
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcC---------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE-CCCE---
Confidence            45577799999999999999888653         34455666541     2332    3468999999876 2223   


Q ss_pred             ecCCCCHHHHHHHH
Q 017971          132 YYGPRKAELLVRYL  145 (363)
Q Consensus       132 y~g~~~~~~i~~~i  145 (363)
                      +-|..+.+.|.+++
T Consensus        88 ~igg~~~~~l~~~L  101 (103)
T 3nzn_A           88 AIVGFKEKEIRESL  101 (103)
T ss_dssp             EEESCCHHHHHHHT
T ss_pred             EEEcCCHHHHHHHh
Confidence            34566777777664

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=97.80  E-value=2.9e-05  Score=59.42  Aligned_cols=102  Identities=14%  Similarity=0.175  Sum_probs=73.6

Q ss_pred             cccCChhhHHh-hhcCCCcEEEEEEeCCChh--------------hHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHh
Q 017971          255 SVPINQDTLNL-LKDDKRKIVLAIVEDETEE--------------KSQKLVTTLKAAASANRE-LVFCYVGIKQFADFAD  318 (363)
Q Consensus       255 ~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~--------------~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~  318 (363)
                      +.+++.+++.. +...++++++.|+.+ ...              ..+.+...+.++++++++ +.|+.+|.++.+.+++
T Consensus         5 v~~l~~~~f~~~~~~~~k~vlv~F~a~-wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~   83 (123)
T 1oaz_A            5 IIHLTDDSFDTDVLKADGAILVDFWAE-WCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP   83 (123)
T ss_dssp             CEECCSTTHHHHTTSCSSEEEEEEECS-SCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGG
T ss_pred             cEecChhhHHHHHHhCCCeEEEEEECC-CCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHH
Confidence            56778888874 456677777777654 344              455566677788888875 9999999999999999


Q ss_pred             hcCCCCCCCCCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          319 TFEANKKSKLPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       319 ~~gi~~~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      .+|+   ...|+++++ .+|+ .....|....+.+..|+...|.
T Consensus        84 ~~~v---~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  123 (123)
T 1oaz_A           84 KYGI---RGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  123 (123)
T ss_dssp             GGTC---CBSSEEEEE-ESSSEEEEEESCCCHHHHHHHHTTTCC
T ss_pred             HcCC---CccCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            9999   679999999 5664 4567777778889999887763

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.78  E-value=3.8e-05  Score=55.37  Aligned_cols=57  Identities=18%  Similarity=0.401  Sum_probs=42.7

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCcCcCCEEEEEeCCEEE
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~  130 (363)
                      .++.|+++||++|++..+.+++.       +  +.+..+|.++++.    +.+.+++.++|++  |.+|+.+
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~-------~--i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i   67 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK-------G--AEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHV   67 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc-------C--CCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence            47789999999999998887753       1  5677788877654    4457899999976  4577644

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.77  E-value=0.00013  Score=59.30  Aligned_cols=93  Identities=16%  Similarity=0.243  Sum_probs=72.2

Q ss_pred             HHHHHHhhcCCCcccCChhhHHhhhcCC--CcEEEEEEeC------CChhhHHHHHHHHHHHHHhCC-----C-cEEEEE
Q 017971          243 LEEFIKQNFLPLSVPINQDTLNLLKDDK--RKIVLAIVED------ETEEKSQKLVTTLKAAASANR-----E-LVFCYV  308 (363)
Q Consensus       243 l~~fi~~~~~p~~~~lt~~~~~~l~~~~--~~~~i~~~~~------~~~~~~~~~~~~l~~~a~~~~-----~-~~f~~v  308 (363)
                      +.++.....-..+.++|..+++.+...+  .++++.|...      .-....+.+...+.++|+++.     + +.|+.|
T Consensus         8 ~~~l~~l~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kv   87 (178)
T 3ga4_A            8 IDDILQLKDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTV   87 (178)
T ss_dssp             CHHHHTTCCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHhhccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEE
Confidence            3445555555668899999999875443  3466666541      245567899999999998875     5 999999


Q ss_pred             eccCchhHHhhcCCCCCCCCCeEEEEeCCC
Q 017971          309 GIKQFADFADTFEANKKSKLPKMVVWDGNE  338 (363)
Q Consensus       309 d~~~~~~~~~~~gi~~~~~~P~~vi~~~~~  338 (363)
                      |.++++++.+.|||   ...|+++++.+.+
T Consensus        88 D~d~~~~la~~~~I---~siPtl~~F~~g~  114 (178)
T 3ga4_A           88 DVNEVPQLVKDLKL---QNVPHLVVYPPAE  114 (178)
T ss_dssp             ETTTCHHHHHHTTC---CSSCEEEEECCCC
T ss_pred             ECccCHHHHHHcCC---CCCCEEEEEcCCC
Confidence            99999999999999   7899999999875

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=97.77  E-value=0.00013  Score=51.88  Aligned_cols=74  Identities=11%  Similarity=0.029  Sum_probs=51.4

Q ss_pred             eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc----hhhhhhCCc-----CcCCEEEEEeCCEEEee
Q 017971           62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLASKQEI-----DAFPTLKIFMHGIPTEY  132 (363)
Q Consensus        62 ~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i-----~~~Pt~~~~~~g~~~~y  132 (363)
                      ..++.|+++||++|++..+.+.+..       -++.+..+|..++    .++.+.++.     .++|++++  +|+.+. 
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i~-   73 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN-------IAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHIG-   73 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT-------CCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEEE-
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC-------CCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEEe-
Confidence            3477899999999999888776532       2355556666554    457777888     99999964  776553 


Q ss_pred             cCCCCHHHHHHHHHhhc
Q 017971          133 YGPRKAELLVRYLKKFV  149 (363)
Q Consensus       133 ~g~~~~~~i~~~i~~~~  149 (363)
                          ..+++.++..+..
T Consensus        74 ----g~~~i~~~~~~~~   86 (89)
T 3msz_A           74 ----GFTELKANADKIL   86 (89)
T ss_dssp             ----SHHHHHHTHHHHT
T ss_pred             ----ChHHHHHHHHHHh
Confidence                3566777666554

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.74  E-value=6.8e-05  Score=57.89  Aligned_cols=106  Identities=8%  Similarity=0.066  Sum_probs=80.6

Q ss_pred             CCCcccCChhhHHhhhc-CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---CcEEEEEeccCchhHHhhcCCCCCCC
Q 017971          252 LPLSVPINQDTLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGIKQFADFADTFEANKKSK  327 (363)
Q Consensus       252 ~p~~~~lt~~~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~---~~~f~~vd~~~~~~~~~~~gi~~~~~  327 (363)
                      .+.+.+++.+++..... .++++++.|+ .......+.+...+.+++++++   ++.|+.+|++..+.+++.|++   ..
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~   81 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFY-APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKV---EG   81 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEEC-CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCC---SS
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCC---Cc
Confidence            34577788888887554 3566666655 4467777888899999998875   399999999988888888998   67


Q ss_pred             CCeEEEEeCCCC--eeEEE-EEEeehhhhhHhhhhhc
Q 017971          328 LPKMVVWDGNEN--YLTVS-INVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       328 ~P~~vi~~~~~~--y~~~~-~~~~~~~~~~~~~~~~~  361 (363)
                      .|++++++.+++  ..... +....+.+..|+...|.
T Consensus        82 ~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~  118 (133)
T 2dj3_A           82 FPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT  118 (133)
T ss_dssp             SSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSS
T ss_pred             CCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcc
Confidence            999999988753  22334 55778889999888764

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.74  E-value=0.00011  Score=60.20  Aligned_cols=33  Identities=21%  Similarity=0.592  Sum_probs=28.2

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK   91 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~   91 (363)
                      ..++.+|+|++-.|+||++++|.+.++.+.+.+
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~   52 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE   52 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCC
Confidence            346899999999999999999999998876543

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.74  E-value=0.00021  Score=59.09  Aligned_cols=41  Identities=22%  Similarity=0.324  Sum_probs=32.4

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA  103 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~  103 (363)
                      .+..++.|++++|++|..+.|.+.++.+.+.+   ++.+..+..
T Consensus        25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~---~v~~~~~p~   65 (193)
T 2rem_A           25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK---DVRFTLVPA   65 (193)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT---TEEEEEEEC
T ss_pred             CCeEEEEEECCCChhHhhhhHHHHHHHHhcCC---ceEEEEeCc
Confidence            45789999999999999999999988876532   466655543

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=97.73  E-value=0.00012  Score=63.57  Aligned_cols=87  Identities=13%  Similarity=0.202  Sum_probs=61.9

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc----------------------------hhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----------------------------SRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----------------------------~~l  109 (363)
                      .+++++|.|| +.||+.|....|.+.++.+++++.+  +.+..|.++..                            ..+
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~g--v~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~v  167 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQI  167 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHH
Confidence            4578999999 9999999999999999999987543  77777766522                            246


Q ss_pred             hhhCCcC------cCCEEEEEe-CCEEEe-ecC----CCCHHHHHHHHHh
Q 017971          110 ASKQEID------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKK  147 (363)
Q Consensus       110 ~~~~~i~------~~Pt~~~~~-~g~~~~-y~g----~~~~~~i~~~i~~  147 (363)
                      ++.|++.      .+|+.+++. +|+... +.+    .+..+++.+.+..
T Consensus       168 a~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          168 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             HHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence            6667775      579888886 454432 222    4556676666543

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=97.72  E-value=8.4e-05  Score=62.08  Aligned_cols=66  Identities=15%  Similarity=0.145  Sum_probs=48.8

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY  106 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~  106 (363)
                      |..+|+....+.++..+.|++-       ++++++|.|| +.||+.|....|.+.++.+++ .   ++.+..|.++..
T Consensus        55 G~~aPdf~l~d~~G~~v~L~d~-------~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~---~v~vv~Is~D~~  121 (200)
T 3zrd_A           55 GDKAKDFTLVAKDLSDVALSSF-------AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-E---NTVVLCISSDLP  121 (200)
T ss_dssp             TCBCCCCEEECTTSCEEEGGGG-------TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-T---TEEEEEEESSCH
T ss_pred             CCCCCCeEEECCCCCEEcHHHh-------CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-C---CCEEEEEECCCH
Confidence            4445555555666666666542       4689999999 689999999999999999877 2   388888877643

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=97.72  E-value=7.1e-05  Score=56.43  Aligned_cols=68  Identities=13%  Similarity=0.259  Sum_probs=47.6

Q ss_pred             hhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--c-----hhhhhhCCcCcCCEEE
Q 017971           50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--Y-----SRLASKQEIDAFPTLK  122 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~-----~~l~~~~~i~~~Pt~~  122 (363)
                      .+.+++.++.++  ++.|+.+||++|++..+.+.+..         +.+-.+|.+.  +     ..+.+..|..++|+++
T Consensus         7 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~~---------i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vf   75 (114)
T 3h8q_A            7 RRHLVGLIERSR--VVIFSKSYCPHSTRVKELFSSLG---------VECNVLELDQVDDGARVQEVLSEITNQKTVPNIF   75 (114)
T ss_dssp             HHHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHTT---------CCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEE
T ss_pred             HHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHcC---------CCcEEEEecCCCChHHHHHHHHHHhCCCccCEEE
Confidence            356777776655  34499999999999988887631         4456667664  2     2355667889999986


Q ss_pred             EEeCCEEE
Q 017971          123 IFMHGIPT  130 (363)
Q Consensus       123 ~~~~g~~~  130 (363)
                      +  +|+.+
T Consensus        76 i--~g~~i   81 (114)
T 3h8q_A           76 V--NKVHV   81 (114)
T ss_dssp             E--TTEEE
T ss_pred             E--CCEEE
Confidence            5  77655

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=97.71  E-value=0.00021  Score=55.58  Aligned_cols=97  Identities=10%  Similarity=0.165  Sum_probs=73.9

Q ss_pred             ChhhHHhhh----cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEE
Q 017971          259 NQDTLNLLK----DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVW  334 (363)
Q Consensus       259 t~~~~~~l~----~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~  334 (363)
                      +.+++....    ..++++++.|+. ......+.+...+.+++++++++.|+.+|.++.+.+++.+|+   ...|+++++
T Consensus        31 ~~~~~~~~~~~~~~~~k~vvv~f~a-~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v---~~~Pt~~~~  106 (139)
T 3d22_A           31 TKERWDQKLSEASRDGKIVLANFSA-RWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEI---KATPTFFFL  106 (139)
T ss_dssp             SHHHHHHHHHHHHHHTCCEEEEEEC-TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTC---CEESEEEEE
T ss_pred             CHHHHHHHHHHHhhcCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCC---CcccEEEEE
Confidence            345555433    245677777765 467777888999999999998899999999999999999999   678999998


Q ss_pred             eCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          335 DGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       335 ~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                       .+|+ .....+. ..+.+..++..+|+
T Consensus       107 -~~G~~~~~~~G~-~~~~l~~~l~~~~~  132 (139)
T 3d22_A          107 -RDGQQVDKLVGA-NKPELHKKITAILD  132 (139)
T ss_dssp             -ETTEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred             -cCCeEEEEEeCC-CHHHHHHHHHHHhc
Confidence             5554 4444554 66788888887764

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.70  E-value=8.1e-05  Score=53.64  Aligned_cols=75  Identities=25%  Similarity=0.377  Sum_probs=54.3

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC-----CcCcCCEEEEEeCCEEEeecCCCC
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ-----EIDAFPTLKIFMHGIPTEYYGPRK  137 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~-----~i~~~Pt~~~~~~g~~~~y~g~~~  137 (363)
                      .++.|..+||++|++....+++.         .+.|-.+|.+++++..+.+     |.+++|++++ .+|....   ..+
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~---------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~l~---~~~   71 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN---------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGSTLT---NPS   71 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT---------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCEEE---SCC
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc---------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEEEe---CCC
Confidence            47789999999999987776541         2778889998887654443     6788999864 5565432   346


Q ss_pred             HHHHHHHHHhhcC
Q 017971          138 AELLVRYLKKFVA  150 (363)
Q Consensus       138 ~~~i~~~i~~~~~  150 (363)
                      .++|.+++.+..+
T Consensus        72 ~~el~~~L~el~g   84 (92)
T 2lqo_A           72 ADEVKAKLVKIAG   84 (92)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            7888888877654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=97.68  E-value=0.00037  Score=52.62  Aligned_cols=79  Identities=19%  Similarity=0.282  Sum_probs=63.2

Q ss_pred             CcccC--ChhhHH-hhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          254 LSVPI--NQDTLN-LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       254 ~~~~l--t~~~~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      .+..+  +..++. .+...++++++.|+. ......+.+...+.+++.+++++.|+.+|.+..+.+++.+++   ...|+
T Consensus         4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a-~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i---~~~Pt   79 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKEAPGLVLVDFFA-TWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGV---SSIPA   79 (118)
T ss_dssp             CSEEECSCHHHHHHHHHHCSSCEEEEEEC-TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSSSE
T ss_pred             cceEecCCHHHHHHHHHhCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCC---CCCCE
Confidence            34455  456676 455566777777764 467778888999999999996699999999999999999999   67999


Q ss_pred             EEEEeC
Q 017971          331 MVVWDG  336 (363)
Q Consensus       331 ~vi~~~  336 (363)
                      +++++.
T Consensus        80 ~~~~~~   85 (118)
T 2f51_A           80 LFFVKK   85 (118)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            999987

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.68  E-value=0.00011  Score=64.99  Aligned_cols=105  Identities=10%  Similarity=0.149  Sum_probs=83.0

Q ss_pred             CCCcccCChhhHHhhhcC--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCC
Q 017971          252 LPLSVPINQDTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKL  328 (363)
Q Consensus       252 ~p~~~~lt~~~~~~l~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~  328 (363)
                      .+.+.++|.++++.+...  ++++++.|+.+ -....+.+...+.++++++++ +.|+.||+++.+.+++.||+   ...
T Consensus         6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~   81 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQSMTTPVLFYFWSE-RSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGL---RAI   81 (287)
T ss_dssp             CTTEEECCTTTHHHHHTTTTTSCEEEEEECT-TCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTC---CSS
T ss_pred             CCccEECCHHHHHHHHHhcCCCeEEEEEECC-CChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCC---CCC
Confidence            456788999999886543  67787777754 555666778888999999887 99999999999999999999   689


Q ss_pred             CeEEEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          329 PKMVVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       329 P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      |+++++..........+....+.+..++...+
T Consensus        82 Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           82 PTVYLFQNGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             CeEEEEECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            99999954334455677777888888887765

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=97.61  E-value=0.0001  Score=60.72  Aligned_cols=43  Identities=16%  Similarity=0.139  Sum_probs=32.6

Q ss_pred             CCe-EEEEEECCCChhhhh-HHHHHHHHHHHhhcCCCCeE-EEEEeCc
Q 017971           60 FDY-ILVDFYAPWCGHCKR-LAPQLDEAAPILAKLKEPIV-IAKVDAD  104 (363)
Q Consensus        60 ~~~-~lv~fy~~~C~~C~~-~~~~~~~~a~~~~~~~~~v~-~~~vd~~  104 (363)
                      +++ +|+.||+.||+.|+. ..|.+.++++++++.+  +. +..|+.+
T Consensus        56 Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d  101 (184)
T 3uma_A           56 GKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG--VDDIAVVAVN  101 (184)
T ss_dssp             TSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESS
T ss_pred             CCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC--CCEEEEEECC
Confidence            454 455566999999999 7999999999987654  55 6666654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=97.61  E-value=0.00054  Score=51.86  Aligned_cols=100  Identities=9%  Similarity=0.067  Sum_probs=72.1

Q ss_pred             CCCcccCChhhHHh-hhcCCC--cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCC
Q 017971          252 LPLSVPINQDTLNL-LKDDKR--KIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL  328 (363)
Q Consensus       252 ~p~~~~lt~~~~~~-l~~~~~--~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~  328 (363)
                      +..+.++|.+++.. +...+.  ++++.|+ .......+.+...+.++|++++++.|+.+|.++.   ...+++   ...
T Consensus         2 ~G~v~~it~~~f~~~v~~~~~~~~vvv~F~-a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~---~~~~~v---~~~   74 (118)
T 3evi_A            2 FGELREISGNQYVNEVTNAEEDVWVIIHLY-RSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHYHD---NCL   74 (118)
T ss_dssp             CCSCEECCGGGHHHHTTTCCTTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT---STTCCG---GGC
T ss_pred             CcceEEeCHHHHHHHHHhcCCCCeEEEEEe-CCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HHHCCC---CCC
Confidence            45677888888886 433333  5666665 4567778899999999999999999999999874   477888   679


Q ss_pred             CeEEEEeCCCCeeEEEE-------EEeehhhhhHhhh
Q 017971          329 PKMVVWDGNENYLTVSI-------NVLKTRVCFFMLT  358 (363)
Q Consensus       329 P~~vi~~~~~~y~~~~~-------~~~~~~~~~~~~~  358 (363)
                      |++++++.........+       +.+.+.++.++.+
T Consensus        75 PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           75 PTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             SEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             CEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            99999987644433333       3455666666543

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=97.61  E-value=0.00018  Score=58.56  Aligned_cols=56  Identities=9%  Similarity=0.067  Sum_probs=36.0

Q ss_pred             CCCeEEEEE-ECCCChhhh-hHHHHHHHHHHHhhcCCCCeEEEE-EeCcc---chhhhhhCCcC
Q 017971           59 SFDYILVDF-YAPWCGHCK-RLAPQLDEAAPILAKLKEPIVIAK-VDADK---YSRLASKQEID  116 (363)
Q Consensus        59 ~~~~~lv~f-y~~~C~~C~-~~~~~~~~~a~~~~~~~~~v~~~~-vd~~~---~~~l~~~~~i~  116 (363)
                      ++++++|.| ++.||+.|. ...|.+.++++++++.+  +.+.. +..+.   ....++++++.
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g--v~vv~~iS~D~~~~~~~f~~~~~~~  103 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVNDAFVTGEWGRAHKAE  103 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC--CEEEEEEcCCCHHHHHHHHHHhCCC
Confidence            345555554 599999999 58899999999987654  44432 55443   12344444443

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=96.76  E-value=8.9e-06  Score=59.94  Aligned_cols=100  Identities=7%  Similarity=0.100  Sum_probs=74.8

Q ss_pred             ccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          256 VPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       256 ~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      .+++.+++.. +...++++++.|+ .......+.+...+++++.++++ +.|+.+|.+..+.+++.+|+   ...|++++
T Consensus         4 ~~l~~~~~~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v---~~~Pt~~~   79 (106)
T 2yj7_A            4 IEVTDENFEQEVLKSDKPVLVDFW-APWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGI---RSIPTLLL   79 (106)
Confidence            4566666664 3455667766665 44566677888888999988885 99999999988899999999   57899999


Q ss_pred             EeCCC-CeeEEEEEEeehhhhhHhhhhh
Q 017971          334 WDGNE-NYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       334 ~~~~~-~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      + .+| ......+....+.+..++..+|
T Consensus        80 ~-~~g~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 2yj7_A           80 F-KNGQVVDRLVGAQPKEALKERIDKHL  106 (106)
Confidence            9 454 4555667777778888776654

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.60  E-value=0.00081  Score=54.77  Aligned_cols=88  Identities=17%  Similarity=0.135  Sum_probs=65.2

Q ss_pred             cCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCccch---------------hhhhh---CCcC
Q 017971           58 SSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKYS---------------RLASK---QEID  116 (363)
Q Consensus        58 ~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~---------------~l~~~---~~i~  116 (363)
                      ++.++.+|+++++||..|..+....   +.+.+-++.   ++.+...|.+...               .++..   +++.
T Consensus        53 ~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~---nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~  129 (178)
T 2ec4_A           53 RDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ---NFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTD  129 (178)
T ss_dssp             TTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH---TEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCST
T ss_pred             hhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc---CEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCC
Confidence            3468999999999999999987553   234555554   3888888887654               34443   8999


Q ss_pred             cCCEEEEEeC--C--EEE-eecCCCCHHHHHHHHHhh
Q 017971          117 AFPTLKIFMH--G--IPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       117 ~~Pt~~~~~~--g--~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                      ++|++.+...  +  +.+ ...|..+++++.+-++..
T Consensus       130 ~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~  166 (178)
T 2ec4_A          130 QFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA  166 (178)
T ss_dssp             TCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence            9999999952  2  233 478999999988877654

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=97.58  E-value=8.2e-05  Score=60.49  Aligned_cols=59  Identities=12%  Similarity=0.193  Sum_probs=42.5

Q ss_pred             CCCeEEEEEECCCChhhhhH-HHHHHHHHHHhhcCCCCeE-EEEEeCcc---chhhhhhCCcC-cCC
Q 017971           59 SFDYILVDFYAPWCGHCKRL-APQLDEAAPILAKLKEPIV-IAKVDADK---YSRLASKQEID-AFP  119 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~-~~~~~~~a~~~~~~~~~v~-~~~vd~~~---~~~l~~~~~i~-~~P  119 (363)
                      ..+.+|+.||+.||+.|+.. .|.+.++.+++++.+  +. +..|+.+.   ....++++++. .+|
T Consensus        43 gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g--~~~vv~Is~d~~~~~~~~~~~~~~~~~fp  107 (171)
T 2pwj_A           43 DKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG--VDSVICVAINDPYTVNAWAEKIQAKDAIE  107 (171)
T ss_dssp             TSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT--CSEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred             CCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCCHHHHHHHHHHhCCCCceE
Confidence            33477788999999999998 999999998887654  55 66676653   23345566653 555

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=97.57  E-value=0.00034  Score=54.25  Aligned_cols=100  Identities=9%  Similarity=-0.029  Sum_probs=79.0

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEec---------cCchhHHhhcCCCCC
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGI---------KQFADFADTFEANKK  325 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~---------~~~~~~~~~~gi~~~  325 (363)
                      +.+++.+++......  ++++.|+.+ -....+.+...+.+++++++ +.|+.+|.         +.++.+++.+|+   
T Consensus        18 v~~l~~~~~~~~~~~--~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v---   90 (135)
T 3emx_A           18 LIYITPEEFRQLLQG--DAILAVYSK-TCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGV---   90 (135)
T ss_dssp             EEECCHHHHHHHHTS--SEEEEEEET-TCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTC---
T ss_pred             eeecCHHHHHHHhCC--cEEEEEECC-cCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCC---
Confidence            456777777776554  777777644 67778888999999999888 99999999         778889999999   


Q ss_pred             CCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          326 SKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       326 ~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ...|++++++.........|....+.+..++..++.
T Consensus        91 ~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~  126 (135)
T 3emx_A           91 EGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYG  126 (135)
T ss_dssp             CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred             ceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            679999999944456677788888888888877664

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=97.56  E-value=0.00042  Score=59.22  Aligned_cols=86  Identities=9%  Similarity=-0.006  Sum_probs=60.8

Q ss_pred             CeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-----------------------------chhhh
Q 017971           61 DYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------------------------YSRLA  110 (363)
Q Consensus        61 ~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----------------------------~~~l~  110 (363)
                      +.++|.|| ++||+.|....+.+.++.+++++.+  +.+..|.++.                             +.+++
T Consensus        30 ~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~--v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va  107 (233)
T 2v2g_A           30 SWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRG--VKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELA  107 (233)
T ss_dssp             SEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHH
T ss_pred             CeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcC--CEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHH
Confidence            47888888 8999999999999999998887643  6666666542                             12456


Q ss_pred             hhCCcC------------cCCEEEEEe-CCEEEe-ecC----CCCHHHHHHHHHhh
Q 017971          111 SKQEID------------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKKF  148 (363)
Q Consensus       111 ~~~~i~------------~~Pt~~~~~-~g~~~~-y~g----~~~~~~i~~~i~~~  148 (363)
                      +.|++.            ..|+.+++. +|+... +.|    .++.++|.+.+...
T Consensus       108 ~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A          108 VKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             HHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            667764            478888886 454332 222    36778888877654

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=97.55  E-value=0.00084  Score=57.00  Aligned_cols=85  Identities=15%  Similarity=0.108  Sum_probs=59.9

Q ss_pred             eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-------------------------------chhhh
Q 017971           62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------------------------------YSRLA  110 (363)
Q Consensus        62 ~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------------------------------~~~l~  110 (363)
                      .+|+.|+++||+.|....+.+.++.+++++.+  +.+..|.++.                               +.+++
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va  111 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELA  111 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHH
Confidence            45666789999999999999999999887543  6676666542                               23466


Q ss_pred             hhCCcC------------cCCEEEEEe-CCEEEe-ecC----CCCHHHHHHHHHhh
Q 017971          111 SKQEID------------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKKF  148 (363)
Q Consensus       111 ~~~~i~------------~~Pt~~~~~-~g~~~~-y~g----~~~~~~i~~~i~~~  148 (363)
                      +.|++.            ..|+.+++. +|+... +.|    .++.++|.+.+...
T Consensus       112 ~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l  167 (224)
T 1prx_A          112 ILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  167 (224)
T ss_dssp             HHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            677773            379999986 455432 332    46788888877654

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=97.54  E-value=0.0002  Score=55.26  Aligned_cols=71  Identities=13%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             hhhHHHhHcCCCeEEEEEECCCChhhhhH-HHHHHHHHHHhhcCCCCeEEEEEeCccc-------hhhhhhCCcCcCCEE
Q 017971           50 ESNFDSAISSFDYILVDFYAPWCGHCKRL-APQLDEAAPILAKLKEPIVIAKVDADKY-------SRLASKQEIDAFPTL  121 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~fy~~~C~~C~~~-~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------~~l~~~~~i~~~Pt~  121 (363)
                      .+.+++.+..++  ++.|+.+||++|++. .+.+.+...      ..+.+..+|.+.+       .++.+.+|..++|++
T Consensus        27 ~~~v~~~i~~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~------~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v   98 (129)
T 3ctg_A           27 VAHVKDLIGQKE--VFVAAKTYCPYCKATLSTLFQELNV------PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNV   98 (129)
T ss_dssp             HHHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHTTSCC------CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHHHcCCC--EEEEECCCCCchHHHHHHHHHhcCc------cCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE
Confidence            456666776554  677999999999988 777665321      1144555565543       357788899999996


Q ss_pred             EEEeCCEEE
Q 017971          122 KIFMHGIPT  130 (363)
Q Consensus       122 ~~~~~g~~~  130 (363)
                        |.+|+.+
T Consensus        99 --fi~g~~i  105 (129)
T 3ctg_A           99 --YINGKHI  105 (129)
T ss_dssp             --EETTEEE
T ss_pred             --EECCEEE
Confidence              5677655

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.53  E-value=0.00014  Score=54.31  Aligned_cols=67  Identities=16%  Similarity=0.283  Sum_probs=48.7

Q ss_pred             hhHHHhHcCCCeEEEEEEC-----CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCcCcCCEE
Q 017971           51 SNFDSAISSFDYILVDFYA-----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTL  121 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~-----~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~  121 (363)
                      +.++++++.++  ++.|+.     +||++|++..+.+.+.         .+.+..+|.+++++    +.+..+..++|++
T Consensus         6 ~~~~~~i~~~~--vvvy~~g~~~~~~Cp~C~~ak~~L~~~---------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i   74 (109)
T 1wik_A            6 SGLKVLTNKAS--VMLFMKGNKQEAKCGFSKQILEILNST---------GVEYETFDILEDEEVRQGLKTFSNWPTYPQL   74 (109)
T ss_dssp             CCHHHHHTTSS--EEEEESSTTTCCCSSTHHHHHHHHHHT---------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHhccCC--EEEEEecCCCCCCCchHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence            45777887655  445777     9999999998887653         16788899988765    4445678899985


Q ss_pred             EEEeCCEEE
Q 017971          122 KIFMHGIPT  130 (363)
Q Consensus       122 ~~~~~g~~~  130 (363)
                        |.+|+.+
T Consensus        75 --fi~g~~i   81 (109)
T 1wik_A           75 --YVRGDLV   81 (109)
T ss_dssp             --ECSSSEE
T ss_pred             --EECCEEE
Confidence              5677644

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.53  E-value=8.2e-05  Score=57.91  Aligned_cols=104  Identities=12%  Similarity=0.234  Sum_probs=74.2

Q ss_pred             CcccCChhhHHhhhcCCC--cEEEEEEeCCChhhHHHHHHHHHHHHHhCC--CcEEEEEeccCchhHHhhcCCCC---CC
Q 017971          254 LSVPINQDTLNLLKDDKR--KIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQFADFADTFEANK---KS  326 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~~~~~~~~~gi~~---~~  326 (363)
                      .+.+++.+++......++  ++++.|+. ......+.+...+.+++++++  ++.|+.+|+++.+.+++.+++..   ..
T Consensus         8 ~v~~l~~~~f~~~~~~~~~~~vlv~f~a-~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~   86 (137)
T 2dj0_A            8 YIKYFNDKTIDEELERDKRVTWIVEFFA-NWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTK   86 (137)
T ss_dssp             CCEECCTTHHHHHHHHSTTSCEEEEECC-TTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSS
T ss_pred             eEEEccHhhHHHHHhcCCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcC
Confidence            466788888886544333  66666654 355556677788888888886  49999999999999999999910   01


Q ss_pred             CCCeEEEEeCCCCeeEEEEEEeehhhhhHhhh
Q 017971          327 KLPKMVVWDGNENYLTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       327 ~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~  358 (363)
                      ..|+++++..........+....+++..|+.+
T Consensus        87 ~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~  118 (137)
T 2dj0_A           87 QLPTLILFQGGKEAMRRPQIDKKGRAVSWTFS  118 (137)
T ss_dssp             CSSEEEEESSSSEEEEESCBCSSSCBCCCCCC
T ss_pred             CCCEEEEEECCEEEEEecCcCchHHHHHHHhc
Confidence            79999999543345556677777777776644

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.45  E-value=0.00095  Score=51.20  Aligned_cols=89  Identities=12%  Similarity=0.082  Sum_probs=69.5

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccC----------------------chhHHhhcCCCCCC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ----------------------FADFADTFEANKKS  326 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~----------------------~~~~~~~~gi~~~~  326 (363)
                      .++++++.|+ .............+.+++++++++.|+.++.+.                      ...+.+.+|+   .
T Consensus        23 ~~k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i---~   98 (136)
T 1lu4_A           23 QGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNV---P   98 (136)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTC---C
T ss_pred             CCCEEEEEEE-CCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCC---C
Confidence            4567877777 446677788888999999988888888888765                      4567888888   5


Q ss_pred             CCCeEEEEeCCCCeeEEE---EEEeehhhhhHhhhhhc
Q 017971          327 KLPKMVVWDGNENYLTVS---INVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       327 ~~P~~vi~~~~~~y~~~~---~~~~~~~~~~~~~~~~~  361 (363)
                      ..|++++++++|+.-...   +....+++..++..+|+
T Consensus        99 ~~P~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll~  136 (136)
T 1lu4_A           99 WQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALTS  136 (136)
T ss_dssp             SSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC--
T ss_pred             CCCEEEEECCCCcEEEEEcCCCccCHHHHHHHHHHHhC
Confidence            789999999999765555   67778889998888763

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=97.42  E-value=0.00057  Score=58.86  Aligned_cols=102  Identities=13%  Similarity=0.240  Sum_probs=76.0

Q ss_pred             CCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC----CCcEEEEEeccC-----chhHHhhcCCC
Q 017971          253 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN----RELVFCYVGIKQ-----FADFADTFEAN  323 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~----~~~~f~~vd~~~-----~~~~~~~~gi~  323 (363)
                      +.+..+|..++..+...+.++++.|+.  ..+... +...+.++|..+    +++.|+.||+++     ++.+++.||+ 
T Consensus        16 ~~v~~Lt~~nF~~vi~~~~~vlV~Fy~--~ApWCg-l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V-   91 (248)
T 2c0g_A           16 TGCVDLDELSFEKTVERFPYSVVKFDI--ASPYGE-KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV-   91 (248)
T ss_dssp             TTCEECCTTTHHHHHTTSSEEEEEEEE--SSCCSH-HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC-
T ss_pred             CCcEECCHHHHHHHHhcCCCEEEEEEC--CCCCCc-cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCC-
Confidence            346788999999876666777777762  012222 778888888876    349999999988     7889999999 


Q ss_pred             CCCCCCeEEEEeCCCC---eeEE--EEEEeehhhhhHhhhhh
Q 017971          324 KKSKLPKMVVWDGNEN---YLTV--SINVLKTRVCFFMLTLL  360 (363)
Q Consensus       324 ~~~~~P~~vi~~~~~~---y~~~--~~~~~~~~~~~~~~~~~  360 (363)
                      ....+|+++++.  |+   ....  .+....+.+..|+...+
T Consensus        92 ~~~~~PTl~~F~--G~~~~~~~y~~~G~~~~~~L~~fi~~~~  131 (248)
T 2c0g_A           92 DDKNFPSIFLFK--GNADEYVQLPSHVDVTLDNLKAFVSANT  131 (248)
T ss_dssp             CTTSCCEEEEES--SSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CcCCCCeEEEEe--CCcCcceeecccCCCCHHHHHHHHHHhh
Confidence            222899999998  44   3444  67778888999988764

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.41  E-value=0.00057  Score=52.82  Aligned_cols=85  Identities=11%  Similarity=0.114  Sum_probs=68.0

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHH---HHHHHhCCCcEEEEEec----cCchhHHhhcCCCCCCCCCeEEEEeCCCCe--
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTL---KAAASANRELVFCYVGI----KQFADFADTFEANKKSKLPKMVVWDGNENY--  340 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~f~~vd~----~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y--  340 (363)
                      ++++++.|+. .-....+.+...+   .++++.++++.++.+|.    +....+++.||+   ...|++++++++|+.  
T Consensus        31 ~k~vlv~F~a-~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v---~~~Pt~~~~d~~G~~v~  106 (134)
T 2fwh_A           31 GKPVMLDLYA-DWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV---LGLPTILFFDGQGQEHP  106 (134)
T ss_dssp             TSCEEEEEEC-TTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTC---CSSSEEEEECTTSCBCG
T ss_pred             CCcEEEEEEC-CCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCC---CCCCEEEEECCCCCEee
Confidence            5777777774 4566677777777   78888888899999999    456779999999   679999999999876  


Q ss_pred             -eEEEEEEeehhhhhHhhh
Q 017971          341 -LTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       341 -~~~~~~~~~~~~~~~~~~  358 (363)
                       +...|....+.+..++..
T Consensus       107 ~~~~~G~~~~~~l~~~l~~  125 (134)
T 2fwh_A          107 QARVTGFMDAETFSAHLRD  125 (134)
T ss_dssp             GGCBCSCCCHHHHHHHHHH
T ss_pred             eeeeeeccCHHHHHHHHHh
Confidence             577888888888877654

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.37  E-value=0.00041  Score=48.59  Aligned_cols=77  Identities=8%  Similarity=-0.010  Sum_probs=61.2

Q ss_pred             EeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHh
Q 017971          278 VEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFM  356 (363)
Q Consensus       278 ~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~  356 (363)
                      |........+.+...++++++++++ +.|..+|.++.+.+.+.+|+   ...|++++   +|+. ...+....+++..++
T Consensus         8 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~---~G~~-~~~G~~~~~~l~~~l   80 (85)
T 1nho_A            8 FTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGL---MAVPAIAI---NGVV-RFVGAPSREELFEAI   80 (85)
T ss_dssp             ESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCS---SCSSEEEE---TTTE-EEECSSCCHHHHHHH
T ss_pred             EECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCc---eeeCEEEE---CCEE-EEccCCCHHHHHHHH
Confidence            3344455556677888888888885 99999999998899999999   67999999   6666 667777888999998


Q ss_pred             hhhhc
Q 017971          357 LTLLQ  361 (363)
Q Consensus       357 ~~~~~  361 (363)
                      .+.|.
T Consensus        81 ~~~le   85 (85)
T 1nho_A           81 NDEME   85 (85)
T ss_dssp             HHHCC
T ss_pred             HHHhC
Confidence            87763

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=97.32  E-value=0.002  Score=49.17  Aligned_cols=89  Identities=15%  Similarity=0.035  Sum_probs=69.0

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccC-----------------------chhHHhhcCCCCC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ-----------------------FADFADTFEANKK  325 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~-----------------------~~~~~~~~gi~~~  325 (363)
                      .++++++.|+ .............+++++++++++.|+.++.+.                       ...+.+.+|+   
T Consensus        24 ~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i---   99 (136)
T 1zzo_A           24 LGKPAVLWFW-APWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGV---   99 (136)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTC---
T ss_pred             CCCeEEEEEE-cCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCC---
Confidence            4567777777 446777788889999999988888888888743                       3457778888   


Q ss_pred             CCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          326 SKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       326 ~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ...|++++++++|+.....+....+.+..++..+|.
T Consensus       100 ~~~P~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A          100 TQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             CSSSEEEEECTTCCEEEEESCCCHHHHHHHHHHHC-
T ss_pred             CCCceEEEECCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            578999999999976566677778888888887764

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=97.31  E-value=0.001  Score=56.27  Aligned_cols=85  Identities=19%  Similarity=0.174  Sum_probs=58.7

Q ss_pred             eEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhhhhhC
Q 017971           62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRLASKQ  113 (363)
Q Consensus        62 ~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l~~~~  113 (363)
                      .+|+.|+++||+.|....+.+.++.+++++.+  +.+..|.++.                            +.++++.|
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~y  111 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKL  111 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHH
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHh
Confidence            44445689999999999999999999887543  7777776642                            12456667


Q ss_pred             CcC------------cCCEEEEEe-CCEEEe-ec----CCCCHHHHHHHHHhh
Q 017971          114 EID------------AFPTLKIFM-HGIPTE-YY----GPRKAELLVRYLKKF  148 (363)
Q Consensus       114 ~i~------------~~Pt~~~~~-~g~~~~-y~----g~~~~~~i~~~i~~~  148 (363)
                      ++.            ..|+.+++. +|+... +.    ..++.++|.+.+...
T Consensus       112 gv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l  164 (220)
T 1xcc_A          112 KIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  164 (220)
T ss_dssp             TCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            773            368888886 454332 22    246788888877654

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.31  E-value=0.00034  Score=57.96  Aligned_cols=45  Identities=18%  Similarity=0.373  Sum_probs=37.4

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY  106 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~  106 (363)
                      ..++.+|.|+++||+||+++.|.+.++.+.+.+   ++.|..++..-+
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~---~v~~~~~p~~~~   67 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD---DMYLRTEHVVWQ   67 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT---TEEEEEEECCCS
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC---CeEEEEecCCCC
Confidence            357899999999999999999999999876543   488888887543

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=97.30  E-value=0.00037  Score=52.45  Aligned_cols=102  Identities=12%  Similarity=0.086  Sum_probs=72.1

Q ss_pred             CCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEecc----CchhHHhhcCCCCCC
Q 017971          252 LPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK----QFADFADTFEANKKS  326 (363)
Q Consensus       252 ~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~----~~~~~~~~~gi~~~~  326 (363)
                      ...+..++.+++......++++++.|+. ......+.+...+.+++++++. +.++-+|..    ..+.+++.+|+   .
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~v~f~a-~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i---~   86 (118)
T 1zma_A           11 IKDLEVTTVVRAQEALDKKETATFFIGR-KTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGI---P   86 (118)
T ss_dssp             TTTSEECCHHHHHHHHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTC---C
T ss_pred             HhhhhcCCHHHHHHHHhCCCeEEEEEEC-CCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCC---C
Confidence            3456677888888776777787777664 4677788889999999987764 555543332    24568899999   6


Q ss_pred             CCCeEEEEeCCCCeeEEEEEEeehhhhhHhh
Q 017971          327 KLPKMVVWDGNENYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       327 ~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~  357 (363)
                      ..|++++++..+......|....+.+..|+.
T Consensus        87 ~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           87 TVPGFVHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             SSCEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             CCCeEEEEECCEEEEEecCCCCHHHHHHHhh
Confidence            7899999974434455566666777777654

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=97.30  E-value=0.00083  Score=53.06  Aligned_cols=103  Identities=15%  Similarity=0.223  Sum_probs=75.5

Q ss_pred             cccCCh-hhHHh-hh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          255 SVPINQ-DTLNL-LK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       255 ~~~lt~-~~~~~-l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      ++.++. ++++. +. ...+++++-|.. .-....+.+...|.++|+++++ +.|+.||.++.+++...+++   ...|+
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A-~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V---~siPT   98 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGH-DYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYEL---YDPVS   98 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEEC-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTC---CSSEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEEC-CCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCC---CCCCE
Confidence            445553 66665 33 355677766664 4667788899999999999987 99999999999999999999   68999


Q ss_pred             EEEEeCCCCee---------EEEEEEe-ehhhhhHhhhhhc
Q 017971          331 MVVWDGNENYL---------TVSINVL-KTRVCFFMLTLLQ  361 (363)
Q Consensus       331 ~vi~~~~~~y~---------~~~~~~~-~~~~~~~~~~~~~  361 (363)
                      ++++...+.-.         ...+.+. +++++.++..+++
T Consensus        99 ~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r  139 (160)
T 2av4_A           99 VMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR  139 (160)
T ss_dssp             EEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence            99887654332         3445554 6677777766553

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.29  E-value=0.016  Score=55.73  Aligned_cols=137  Identities=12%  Similarity=0.047  Sum_probs=101.8

Q ss_pred             CCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh--cCCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHH
Q 017971          216 DKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN--FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL  293 (363)
Q Consensus       216 ~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~--~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l  293 (363)
                      ...|++.+.+++.+....|.|--.-.++..|+.--  .-..-.+++.+..+.+.....+..+.+|........+.....+
T Consensus        60 ~~~p~~~~~~~~~~~~i~f~g~p~g~e~~s~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l  139 (521)
T 1hyu_A           60 VRKPSFLITNPGSQQGPRFAGSPLGHEFTSLVLALLWTGGHPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQAL  139 (521)
T ss_dssp             SCSSEEEEECTTCCCSCEEESCCCGGGHHHHHHHHHHHTTCCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHH
T ss_pred             cCCCEEEEecCCCcceEEEeccCcchhHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHH
Confidence            45699999876555567888876666777776552  1122357888888888765566666666666788888899999


Q ss_pred             HHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhh
Q 017971          294 KAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTL  359 (363)
Q Consensus       294 ~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~  359 (363)
                      .+++..++++.+..+|.+.++++.+.+|+   ...|++++   +|+.. ..+....+++..++.+.
T Consensus       140 ~~~a~~~~~v~~~~vd~~~~~~~~~~~~i---~svPt~~i---~g~~~-~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          140 NLMAVLNPRIKHTAIDGGTFQNEITERNV---MGVPAVFV---NGKEF-GQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             HHHHHHCTTEEEEEEETTTCHHHHHHTTC---CSSSEEEE---TTEEE-EESCCCHHHHHHHHCCS
T ss_pred             HHHHhHcCceEEEEEechhhHHHHHHhCC---CccCEEEE---CCEEE-ecCCCCHHHHHHHHhhc
Confidence            99999988899999999999999999999   67899988   55433 33666677777765543

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=97.28  E-value=0.0014  Score=51.70  Aligned_cols=98  Identities=13%  Similarity=0.158  Sum_probs=74.4

Q ss_pred             ChhhHHhhh--cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEe
Q 017971          259 NQDTLNLLK--DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD  335 (363)
Q Consensus       259 t~~~~~~l~--~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~  335 (363)
                      +.+++....  ..++++++.|+. .-....+.+...+.++++++++ +.|+.+|.++.+.+++.+++   ...|+++++.
T Consensus        10 ~~~~~~~~i~~~~~k~vlv~F~a-~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v---~~~Pt~~~~~   85 (149)
T 3gix_A           10 SKKEVDQAIKSTAEKVLVLRFGR-DEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDI---SYIPSTVFFF   85 (149)
T ss_dssp             SHHHHHHHHHHCCSSEEEEEEEC-TTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTC---CSSSEEEEEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCC---CccCeEEEEE
Confidence            456666543  446777776664 4677788889999999999988 99999999999999999999   6799999666


Q ss_pred             CCCCe---------eEEEE-EEeehhhhhHhhhhh
Q 017971          336 GNENY---------LTVSI-NVLKTRVCFFMLTLL  360 (363)
Q Consensus       336 ~~~~y---------~~~~~-~~~~~~~~~~~~~~~  360 (363)
                      ..+..         ....+ ....+.+..++..++
T Consensus        86 ~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           86 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             TTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHH
T ss_pred             CCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHH
Confidence            44333         45566 566677777777665

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.27  E-value=0.00041  Score=48.58  Aligned_cols=80  Identities=10%  Similarity=0.076  Sum_probs=61.5

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehh
Q 017971          273 IVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTR  351 (363)
Q Consensus       273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~  351 (363)
                      .++.|. .......+.....++++++++++ +.|..+|.++.+.+++.+|+   ...|++++   +|+. ...+....+.
T Consensus         5 ~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~---~G~~-~~~G~~~~~~   76 (85)
T 1fo5_A            5 KIELFT-SPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGI---MAVPTIVI---NGDV-EFIGAPTKEA   76 (85)
T ss_dssp             EEEEEE-CCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTT---CCSSEEEE---TTEE-ECCSSSSSHH
T ss_pred             EEEEEe-CCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCC---cccCEEEE---CCEE-eeecCCCHHH
Confidence            444444 44555566777888899999885 99999999988889999999   67899999   6665 5666667788


Q ss_pred             hhhHhhhhh
Q 017971          352 VCFFMLTLL  360 (363)
Q Consensus       352 ~~~~~~~~~  360 (363)
                      +..++.+.|
T Consensus        77 l~~~l~~~l   85 (85)
T 1fo5_A           77 LVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            888877654

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=97.26  E-value=0.0011  Score=56.74  Aligned_cols=102  Identities=13%  Similarity=0.189  Sum_probs=75.5

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---CcEEEEEec-----cCchhHHhhcCCCCC
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGI-----KQFADFADTFEANKK  325 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~---~~~f~~vd~-----~~~~~~~~~~gi~~~  325 (363)
                      .+.++|..++..+...+.++++.|+.  ..++.. +...+.++|..+.   ++.|+.||+     ..++.+++.|++ ..
T Consensus         6 ~v~~Lt~~nF~~~i~~~~~vlV~FyA--~~pWCg-l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V-~~   81 (240)
T 2qc7_A            6 GALPLDTVTFYKVIPKSKFVLVKFDT--QYPYGE-KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL-DK   81 (240)
T ss_dssp             TCEECCTTHHHHHGGGCSEEEEEECC--SSCCSH-HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC-CG
T ss_pred             CceECCHHHHHHHHcCCCCEEEEEeC--CCCCCc-chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC-CC
Confidence            46788999999876666777777763  012223 7888888888764   399999994     457899999999 21


Q ss_pred             CCCCeEEEEeCCC--CeeEEEEEEeehhhhhHhhhh
Q 017971          326 SKLPKMVVWDGNE--NYLTVSINVLKTRVCFFMLTL  359 (363)
Q Consensus       326 ~~~P~~vi~~~~~--~y~~~~~~~~~~~~~~~~~~~  359 (363)
                      ..+|+++++....  .....++....+.+..|+...
T Consensus        82 ~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           82 ESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             GGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred             CCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence            2899999997644  355667878888899998765

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=97.26  E-value=0.0019  Score=54.53  Aligned_cols=107  Identities=8%  Similarity=-0.020  Sum_probs=69.3

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCC-Chhhh-----hHHHHHHHHHHHhhcCCCCeEEEEEe
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPW-CGHCK-----RLAPQLDEAAPILAKLKEPIVIAKVD  102 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~-C~~C~-----~~~~~~~~~a~~~~~~~~~v~~~~vd  102 (363)
                      .|..+|+....+.++..+.|++  |     .+++++|.||+.| |+.|.     ...+.+.+.   ++    .+.+..|.
T Consensus        24 vG~~APdFtL~d~~G~~vsLsd--~-----~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~----gv~VvgIS   89 (224)
T 3keb_A           24 KGDYLPSFMLVDDQKHDAALES--F-----SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WP----HLKLIVIT   89 (224)
T ss_dssp             TTCBCCCCEEEETTSCEEEGGG--G-----TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CT----TSEEEEEE
T ss_pred             CCCCCCCeEEECCCCCEEeHHH--h-----CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cC----CCEEEEEE
Confidence            3455666666666666666654  2     4578999999998 99999     777777665   32    25555554


Q ss_pred             Cc----------------------c-chhhhhhCCcCc---------CCEEEEEe-CCEEEe------ecCCCCHHHHHH
Q 017971          103 AD----------------------K-YSRLASKQEIDA---------FPTLKIFM-HGIPTE------YYGPRKAELLVR  143 (363)
Q Consensus       103 ~~----------------------~-~~~l~~~~~i~~---------~Pt~~~~~-~g~~~~------y~g~~~~~~i~~  143 (363)
                      ++                      . +..+++.||+..         .|+.+++. +|....      +.+....+.+.+
T Consensus        90 ~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~  169 (224)
T 3keb_A           90 VDSPSSLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEK  169 (224)
T ss_dssp             SSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHH
Confidence            32                      2 357888898864         79999986 454321      234556777777


Q ss_pred             HHHhhc
Q 017971          144 YLKKFV  149 (363)
Q Consensus       144 ~i~~~~  149 (363)
                      .+....
T Consensus       170 ~L~~l~  175 (224)
T 3keb_A          170 LLQEGE  175 (224)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            765543

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.22  E-value=0.0028  Score=48.94  Aligned_cols=101  Identities=9%  Similarity=0.011  Sum_probs=70.8

Q ss_pred             cCCCcccCChhhHHhhhcC-C--CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCC
Q 017971          251 FLPLSVPINQDTLNLLKDD-K--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK  327 (363)
Q Consensus       251 ~~p~~~~lt~~~~~~l~~~-~--~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~  327 (363)
                      .+..+.+++.+++...... +  +++++.|+ ..-....+.+...+.+++.+++++.|+.||.++..   +.|++   ..
T Consensus         8 ~~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~-a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---~~~~i---~~   80 (135)
T 2dbc_A            8 KFGELREISGNQYVNEVTNAEKDLWVVIHLY-RSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---EHYHD---NC   80 (135)
T ss_dssp             CCCSCEECCHHHHHHHTTTCCSSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---SSCCS---SC
T ss_pred             CCCceEEcCHHHHHHHHHhcCCCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---ccCCC---CC
Confidence            3455677788888764332 2  35555554 45677788899999999999988999999998754   67888   67


Q ss_pred             CCeEEEEeCCCCeeEEEEEE-------eehhhhhHhhh
Q 017971          328 LPKMVVWDGNENYLTVSINV-------LKTRVCFFMLT  358 (363)
Q Consensus       328 ~P~~vi~~~~~~y~~~~~~~-------~~~~~~~~~~~  358 (363)
                      .|++++++.........+-.       ..+.++.++..
T Consensus        81 ~Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~  118 (135)
T 2dbc_A           81 LPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSE  118 (135)
T ss_dssp             CSEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHH
T ss_pred             CCEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHH
Confidence            99999998433344444432       55667666654

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.12  E-value=0.0019  Score=49.86  Aligned_cols=101  Identities=12%  Similarity=0.092  Sum_probs=71.6

Q ss_pred             cccCCh-hhHHhhhcC--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          255 SVPINQ-DTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       255 ~~~lt~-~~~~~l~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      +.+++. +++..+...  ++++++.|+ .......+.+...+.++++++ ++.|+.+|.+..+.+++.||+   ...|++
T Consensus        22 v~~l~~~~~~~~~l~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v---~~~Pt~   96 (133)
T 3cxg_A           22 YIELKNTGSLNQVFSSTQNSSIVIKFG-AVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNI---KALPTF   96 (133)
T ss_dssp             EEECCCTTHHHHHHTC-CCSEEEEEEE-CTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTC---CSSSEE
T ss_pred             EEEecChhHHHHHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCC---CCCCEE
Confidence            444553 566654433  345666555 446777778888888887776 589999999999999999999   679999


Q ss_pred             EEEe-CCCC---eeEEEEEEeehhhhhHhhhhhc
Q 017971          332 VVWD-GNEN---YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       332 vi~~-~~~~---y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++. ++|+   .....+. ..+.+..++..+|+
T Consensus        97 ~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           97 EFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            9993 3443   3344444 67788888887764

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=97.10  E-value=0.002  Score=50.40  Aligned_cols=75  Identities=17%  Similarity=0.239  Sum_probs=59.0

Q ss_pred             ChhhHHh-hhc-CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEe
Q 017971          259 NQDTLNL-LKD-DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD  335 (363)
Q Consensus       259 t~~~~~~-l~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~  335 (363)
                      +.+++.. +.. .++++++.|+. .-....+.+...+.++++++++ +.|+.+|.++.+.+++.+|+   ...|++++++
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i---~~~Pt~~~~~   85 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGH-DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL---YDPCTVMFFF   85 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEEC-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCS---CSSCEEEEEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCC---CCCCEEEEEE
Confidence            3566664 333 46777777664 4677778889999999998865 99999999998999999999   6799999997


Q ss_pred             CC
Q 017971          336 GN  337 (363)
Q Consensus       336 ~~  337 (363)
                      ..
T Consensus        86 ~G   87 (142)
T 1qgv_A           86 RN   87 (142)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.08  E-value=0.0011  Score=51.03  Aligned_cols=92  Identities=9%  Similarity=0.160  Sum_probs=69.1

Q ss_pred             cCCCcEEEEEEeCCChhhHHHHHHHHH--HHHHhCCC-cEEEEEec---cCchhHHhhcCCCCCCCCCeEEEEeCCCC-e
Q 017971          268 DDKRKIVLAIVEDETEEKSQKLVTTLK--AAASANRE-LVFCYVGI---KQFADFADTFEANKKSKLPKMVVWDGNEN-Y  340 (363)
Q Consensus       268 ~~~~~~~i~~~~~~~~~~~~~~~~~l~--~~a~~~~~-~~f~~vd~---~~~~~~~~~~gi~~~~~~P~~vi~~~~~~-y  340 (363)
                      ..++++++.|.. .-....+.+...+.  +++..+++ +.++.+|.   +..+.+++.+|+......|++++++++|+ .
T Consensus        27 ~~~k~vlv~f~a-~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           27 RTHKPTLLVFGA-NWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             HHTCCEEEEEEC-TTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEE
T ss_pred             hcCCcEEEEEcC-CCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEE
Confidence            456788777764 46677777888888  88887754 99999999   77888999999821157899999999886 3


Q ss_pred             eEEEE-------EEeehhhhhHhhhhh
Q 017971          341 LTVSI-------NVLKTRVCFFMLTLL  360 (363)
Q Consensus       341 ~~~~~-------~~~~~~~~~~~~~~~  360 (363)
                      +...+       ....+.+..|+..+.
T Consensus       106 ~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A          106 YTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             EECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             EEecCCcccccccCCHHHHHHHHHHhc
Confidence            34444       466778888887664

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.02  E-value=0.0014  Score=49.99  Aligned_cols=89  Identities=4%  Similarity=0.036  Sum_probs=65.7

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHH---HHHHHhCCC-cEEEEEecc--CchhHHhhcCCCCCCCCCeEEEEeCCCC-ee
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTL---KAAASANRE-LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGNEN-YL  341 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~~~~~-~~f~~vd~~--~~~~~~~~~gi~~~~~~P~~vi~~~~~~-y~  341 (363)
                      .++++++.|+. ......+.+...+   ..+++.+.. +.++.+|.+  ....+++.+|+   ...|++++++++|+ .+
T Consensus        26 ~~k~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v---~~~Pt~~~~d~~G~~~~  101 (130)
T 2kuc_A           26 EDKLLFVDCFT-TWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGV---HAYPTLLFINSSGEVVY  101 (130)
T ss_dssp             HSSCEEEEECC-TTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTC---CSSCEEEEECTTSCEEE
T ss_pred             cCCeEEEEEEC-CCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCC---CCCCEEEEECCCCcEEE
Confidence            45777777764 3555666666666   555555443 888899987  46789999999   67999999998875 44


Q ss_pred             EEEEEEeehhhhhHhhhhhc
Q 017971          342 TVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ...|....+++..|+...+.
T Consensus       102 ~~~G~~~~~~l~~~l~~~~~  121 (130)
T 2kuc_A          102 RLVGAEDAPELLKKVKLGVE  121 (130)
T ss_dssp             EEESCCCHHHHHHHHHHHHS
T ss_pred             EecCCCCHHHHHHHHHHHHH
Confidence            56677778889998887764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=97.02  E-value=0.0017  Score=49.26  Aligned_cols=99  Identities=9%  Similarity=0.153  Sum_probs=68.0

Q ss_pred             cccCChhhHHhhhcC--CCcEEEEEEeCC------ChhhHHHHHHHHHHHHHhCCC-cEEEEEec-------cCchhHHh
Q 017971          255 SVPINQDTLNLLKDD--KRKIVLAIVEDE------TEEKSQKLVTTLKAAASANRE-LVFCYVGI-------KQFADFAD  318 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~--~~~~~i~~~~~~------~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~-------~~~~~~~~  318 (363)
                      +...+.+++......  ++++++.|+.+.      -......+...+.++++++++ +.|+.+|.       +..+.+.+
T Consensus         7 v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~   86 (123)
T 1wou_A            7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK   86 (123)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred             EEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHH
Confidence            344556666654433  667777666431      566678889999999999875 99999999       66788999


Q ss_pred             hcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhh
Q 017971          319 TFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       319 ~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~  357 (363)
                      .+++   ...|++++++..++..-..+ ...++++.|+.
T Consensus        87 ~~~i---~~~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~  121 (123)
T 1wou_A           87 NLKV---TAVPTLLKYGTPQKLVESEC-LQANLVEMLFS  121 (123)
T ss_dssp             HHCC---CSSSEEEETTSSCEEEGGGG-GCHHHHHHHHH
T ss_pred             HCCC---CeeCEEEEEcCCceEecccc-CCHHHHHHHHh
Confidence            9999   67999999988433322211 23445555543

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=97.00  E-value=0.0001  Score=56.48  Aligned_cols=101  Identities=10%  Similarity=0.143  Sum_probs=70.7

Q ss_pred             cccC-ChhhHHhhhc----CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          255 SVPI-NQDTLNLLKD----DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       255 ~~~l-t~~~~~~l~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      +.++ +.+++.....    .++++++.|+ .......+.+...+.+++.+++++.|+.+|.+..+.+++.+|+   ...|
T Consensus        16 ~~~i~~~~~~~~~l~~~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v---~~~P   91 (130)
T 1wmj_A           16 VIACHNKDEFDAQMTKAKEAGKVVIIDFT-ASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNV---EAMP   91 (130)
T ss_dssp             SBCCSSSHHHHHHHHHHHTTTCBCBEECC-SSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTC---CSSC
T ss_pred             eEEcCCHHHHHHHHHHHhhcCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCC---Cccc
Confidence            3444 3355554332    3566666665 3345555566778888888888899999999998999999999   6789


Q ss_pred             eEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++++ .+|+ .....+ ...+.+..++..+|+
T Consensus        92 t~~~~-~~g~~~~~~~g-~~~~~l~~~l~~~~~  122 (130)
T 1wmj_A           92 TFLFI-KDGAEADKVVG-ARKDDLQNTIVKHVG  122 (130)
T ss_dssp             CCCBC-TTTTCCBCCCT-TCTTTHHHHHHHHTS
T ss_pred             eEEEE-eCCeEEEEEeC-CCHHHHHHHHHHHHh
Confidence            99888 4443 333444 467788888887775

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=96.92  E-value=0.0056  Score=50.94  Aligned_cols=87  Identities=18%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHH-HHHHHHhhcCCCCeEEEEEeCc---------------------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQL-DEAAPILAKLKEPIVIAKVDAD---------------------------------  104 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~-~~~a~~~~~~~~~v~~~~vd~~---------------------------------  104 (363)
                      ..+..+|.|....|++|+++.+.. ..+.+.+-+ .++|.|...+..                                 
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~-~g~v~~~~~~~p~~~~~s~~Aa~aa~a~~~~~~~~f~~~~~aLf~  106 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFID-KGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFE  106 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTT-TTSEEEEEEECCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhcc-CCeEEEEEEecCccchhHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence            346889999999999999999886 455555422 223666654421                                 


Q ss_pred             --------------------------------------------cchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHH
Q 017971          105 --------------------------------------------KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAEL  140 (363)
Q Consensus       105 --------------------------------------------~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~  140 (363)
                                                                  .+...++++||.++|++++  +|+.  +.|..+.+.
T Consensus       107 ~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~gV~gtPtfvv--nG~~--~~G~~~~e~  182 (202)
T 3gha_A          107 KQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKMNIQATPTIYV--NDKV--IKNFADYDE  182 (202)
T ss_dssp             HCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHTTCCSSCEEEE--TTEE--CSCTTCHHH
T ss_pred             hCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE--ecCCCCHHH
Confidence                                                        0012345568999999987  7765  568888888


Q ss_pred             HHHHHHhhcC
Q 017971          141 LVRYLKKFVA  150 (363)
Q Consensus       141 i~~~i~~~~~  150 (363)
                      +.+.|.+...
T Consensus       183 l~~~i~~~~~  192 (202)
T 3gha_A          183 IKETIEKELK  192 (202)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888876543

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=96.84  E-value=0.00049  Score=56.80  Aligned_cols=42  Identities=14%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             CeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCcc
Q 017971           61 DYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADK  105 (363)
Q Consensus        61 ~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~  105 (363)
                      ++.+|.|++.||+||+++.|.+   .++.+.+.+   ++.|..++..-
T Consensus        15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~   59 (189)
T 3l9v_A           15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ---GSRMVKYHVSL   59 (189)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT---TCCEEEEECSS
T ss_pred             CCEEEEEECCCChhHHHHhHhccchHHHHHhCCC---CCEEEEEechh
Confidence            6889999999999999999987   566655433   47777777643

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.011  Score=49.41  Aligned_cols=111  Identities=14%  Similarity=0.087  Sum_probs=71.9

Q ss_pred             CCCCccccccC-CCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc--
Q 017971           30 GLSSEEETKFK-IDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--  105 (363)
Q Consensus        30 ~~~~~~~~~~~-~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--  105 (363)
                      +..+|+...+. .++...+++-++|     .++.+++.|| +.||+.|....+.+.+...++++.+  +.+..|.++.  
T Consensus        26 G~~APdF~l~a~~d~~~~~vsLsd~-----~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g--~~vigiS~Ds~~   98 (216)
T 3sbc_A           26 QKQAPTFKKTAVVDGVFDEVSLDKY-----KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG--AQVLFASTDSEY   98 (216)
T ss_dssp             TSBCCCCCEEEEETTEEEEECGGGG-----TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSCHH
T ss_pred             CCcCCCCCCcceECCCCcEEehHHh-----CCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCC--ceEEEeecCchh
Confidence            44455544331 1333445555554     4578899999 8999999999999999999988764  6666666542  


Q ss_pred             --------------------------chhhhhhCCcC------cCCEEEEEeCCEEEe----e--cCCCCHHHHHHHHHh
Q 017971          106 --------------------------YSRLASKQEID------AFPTLKIFMHGIPTE----Y--YGPRKAELLVRYLKK  147 (363)
Q Consensus       106 --------------------------~~~l~~~~~i~------~~Pt~~~~~~g~~~~----y--~g~~~~~~i~~~i~~  147 (363)
                                                +.++++.||+-      ..+..++......++    |  .-.|+.+++++-+..
T Consensus        99 sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~A  178 (216)
T 3sbc_A           99 SLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEA  178 (216)
T ss_dssp             HHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHH
Confidence                                      34578888873      346666665443332    2  235778877776644

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=96.80  E-value=0.0071  Score=47.96  Aligned_cols=89  Identities=8%  Similarity=0.062  Sum_probs=66.7

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhc--------------------------
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTF--------------------------  320 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~--------------------------  320 (363)
                      .++++++.|+ .............+.++++++++  +.++.|+.++.+..++.+                          
T Consensus        33 ~gk~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (165)
T 3or5_A           33 KGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYID  111 (165)
T ss_dssp             TTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTST
T ss_pred             CCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhc
Confidence            4567777776 45667778888889998888775  888888877644433333                          


Q ss_pred             -CCCCCCCCCeEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          321 -EANKKSKLPKMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       321 -gi~~~~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                       |+   ...|++++++++|+. +...+....+.+..++..+|.
T Consensus       112 ~~i---~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  151 (165)
T 3or5_A          112 GGI---TGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALG  151 (165)
T ss_dssp             TCS---CSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC
T ss_pred             cCC---CCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence             55   578999999999874 555677788899999988875

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=96.76  E-value=0.0025  Score=53.74  Aligned_cols=81  Identities=16%  Similarity=0.297  Sum_probs=61.5

Q ss_pred             CCcccC-ChhhHHhhhc-C--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCC
Q 017971          253 PLSVPI-NQDTLNLLKD-D--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL  328 (363)
Q Consensus       253 p~~~~l-t~~~~~~l~~-~--~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~  328 (363)
                      ..+.++ +..++..... .  ++++++.|+ .......+.+...+..+|.+++++.|+.||+. .+.++..|++   ..+
T Consensus        99 g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~-a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~l~~~~~i---~~~  173 (217)
T 2trc_P           99 GFVYELETGEQFLETIEKEQKVTTIVVNIY-EDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTGAGDRFSS---DVL  173 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHTCSTTSCG---GGC
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCcEEEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHHHHHHCCC---CCC
Confidence            345566 6677766443 2  256666666 44677778889999999999988999999998 6778888988   678


Q ss_pred             CeEEEEeCCCC
Q 017971          329 PKMVVWDGNEN  339 (363)
Q Consensus       329 P~~vi~~~~~~  339 (363)
                      |+++++. +|+
T Consensus       174 PTl~~~~-~G~  183 (217)
T 2trc_P          174 PTLLVYK-GGE  183 (217)
T ss_dssp             SEEEEEE-TTE
T ss_pred             CEEEEEE-CCE
Confidence            9999997 453

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.0028  Score=48.49  Aligned_cols=70  Identities=13%  Similarity=0.219  Sum_probs=45.5

Q ss_pred             hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc---hh----hhhhCCcCcCCEEEE
Q 017971           51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---SR----LASKQEIDAFPTLKI  123 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~~----l~~~~~i~~~Pt~~~  123 (363)
                      ++|+++++.++  ++.|+.+||++|++....+.+..    ..+  +.+..+|.+..   .+    +.+..|...+|++++
T Consensus         5 ~~~~~ii~~~~--Vvvysk~~Cp~C~~ak~lL~~~~----~~~--v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI   76 (127)
T 3l4n_A            5 KEYSLILDLSP--IIIFSKSTCSYSKGMKELLENEY----QFI--PNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLV   76 (127)
T ss_dssp             HHHHHHHTSCS--EEEEECTTCHHHHHHHHHHHHHE----EEE--SCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHHccCC--EEEEEcCCCccHHHHHHHHHHhc----ccC--CCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEE
Confidence            56888887655  77799999999999988887631    111  33444555432   12    333458889999854


Q ss_pred             EeCCEEE
Q 017971          124 FMHGIPT  130 (363)
Q Consensus       124 ~~~g~~~  130 (363)
                        +|+.+
T Consensus        77 --~G~~I   81 (127)
T 3l4n_A           77 --NGVSR   81 (127)
T ss_dssp             --TTEEC
T ss_pred             --CCEEE
Confidence              66543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=96.74  E-value=0.0081  Score=46.49  Aligned_cols=89  Identities=10%  Similarity=0.069  Sum_probs=68.2

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEecc---------------------------CchhHHhhc
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK---------------------------QFADFADTF  320 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~---------------------------~~~~~~~~~  320 (363)
                      .++++++.|+. ............++++++++++ +.|+.++.+                           ....+.+.|
T Consensus        28 ~gk~~lv~f~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  106 (148)
T 2b5x_A           28 GEKPTLIHFWS-ISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (148)
T ss_dssp             TTSCEEEEEEC-TTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             CCCEEEEEEEc-CCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHh
Confidence            45677777774 4667778888899999888877 888888743                           245688889


Q ss_pred             CCCCCCCCCeEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          321 EANKKSKLPKMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       321 gi~~~~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      |+   ...|++++++++|+. +...+....+.+..++..+|+
T Consensus       107 ~v---~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A          107 EN---EYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             CC---CCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             CC---CCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence            98   578999999999864 445566677888888888875

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=96.71  E-value=0.006  Score=45.24  Aligned_cols=91  Identities=13%  Similarity=0.123  Sum_probs=65.7

Q ss_pred             hhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchh----HHhhcCCCCCCCCCeEEEEe
Q 017971          260 QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFAD----FADTFEANKKSKLPKMVVWD  335 (363)
Q Consensus       260 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~----~~~~~gi~~~~~~P~~vi~~  335 (363)
                      .+.++.+...++|+++.+. .......+.....+.+.+.. .++.|.++|..++..    ++..+|+  ....|++++++
T Consensus        14 ~e~f~~ii~~~~~vvi~kh-atwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V--~h~sPq~il~k   89 (112)
T 3iv4_A           14 IDQFEQVIEENKYVFVLKH-SETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNV--KHESPQAFYFV   89 (112)
T ss_dssp             HHHHHHHHHHCSEEEEEEE-CTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTC--CCCSSEEEEEE
T ss_pred             HHHHHHHHhcCCCEEEEEE-CCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCC--ccCCCeEEEEE
Confidence            4566666555667776665 45777778888889888875 569999999998754    7999999  23589999998


Q ss_pred             CCCC-eeEEEEEEeehhhhh
Q 017971          336 GNEN-YLTVSINVLKTRVCF  354 (363)
Q Consensus       336 ~~~~-y~~~~~~~~~~~~~~  354 (363)
                      .... +-..-..++.+.+..
T Consensus        90 ~G~~v~~~SH~~I~~~~l~~  109 (112)
T 3iv4_A           90 NGEMVWNRDHGDINVSSLAQ  109 (112)
T ss_dssp             TTEEEEEEEGGGCSHHHHHH
T ss_pred             CCEEEEEeeccccCHHHHHH
Confidence            7753 444555565555544

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=96.64  E-value=0.02  Score=45.44  Aligned_cols=88  Identities=10%  Similarity=0.100  Sum_probs=65.8

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEecc------------------Cc-----------------
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK------------------QF-----------------  313 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~------------------~~-----------------  313 (363)
                      .++++++.|+ .............|++++++++++.|+.|+.+                  ..                 
T Consensus        36 ~gk~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           36 GGDVVILWFM-AAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             CSSEEEEEEE-CTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CCCEEEEEEE-CCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            3467777776 44566677788889999988888888888765                  22                 


Q ss_pred             -----hhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEE-eehhhhhHhhhhhc
Q 017971          314 -----ADFADTFEANKKSKLPKMVVWDGNENYLTVSINV-LKTRVCFFMLTLLQ  361 (363)
Q Consensus       314 -----~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~-~~~~~~~~~~~~~~  361 (363)
                           ..+.+.||+   ...|++++++++|+... .+.. ..+.+..++..+|.
T Consensus       115 ~~~d~~~~~~~~~v---~~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          115 MVMDDGSLVEKFNV---RSIDYIVIMDKSSNVLY-AGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             EEECCSHHHHHTTC---CSSSEEEEEETTCCEEE-EEESCCHHHHHHHHHHC--
T ss_pred             EEeChHHHHHHhCC---CCceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHHHhc
Confidence                 256677777   57899999999998777 7777 78888888887763

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=96.58  E-value=0.01  Score=46.90  Aligned_cols=92  Identities=13%  Similarity=0.080  Sum_probs=65.3

Q ss_pred             cCCCcEEEEEEeCCChhhHHHHHHHH---HHHHHhC-CCcEEEEEeccCc-----------hhHHhhcCCCCCCCCCeEE
Q 017971          268 DDKRKIVLAIVEDETEEKSQKLVTTL---KAAASAN-RELVFCYVGIKQF-----------ADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       268 ~~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~~~-~~~~f~~vd~~~~-----------~~~~~~~gi~~~~~~P~~v  332 (363)
                      ..++++++.|+...-....+.....+   .++++.. .++.++.+|....           ..+++.|++   ...|+++
T Consensus        45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v---~~~Pt~~  121 (154)
T 2ju5_A           45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKV---TGFPELV  121 (154)
T ss_dssp             HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTC---CSSSEEE
T ss_pred             hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCC---CCCCEEE
Confidence            34577777776334566667777766   5665544 3489999998764           378899999   5799999


Q ss_pred             EEeCCCCeeEEEEEE--eehhhhhHhhhhhcC
Q 017971          333 VWDGNENYLTVSINV--LKTRVCFFMLTLLQF  362 (363)
Q Consensus       333 i~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~  362 (363)
                      +++++|+.....+..  ..+.+..++..+|+-
T Consensus       122 ~~d~~G~~~~~~G~~~~~~~~l~~~l~~~l~~  153 (154)
T 2ju5_A          122 FIDAEGKQLARMGFEPGGGAAYVSKVKSALKL  153 (154)
T ss_dssp             EECTTCCEEEEECCCTTCHHHHHHHHHHHHTC
T ss_pred             EEcCCCCEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            999998643322666  677888888887753

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=96.55  E-value=0.0012  Score=54.16  Aligned_cols=40  Identities=20%  Similarity=0.279  Sum_probs=33.3

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      +++.+|+|++.||+||+++.|.+.++.+.+ +    +.|..+...
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~----v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-G----TDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-T----SCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh-C----CeEEEEecc
Confidence            578999999999999999999999999877 2    555566543

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=96.55  E-value=0.0033  Score=59.00  Aligned_cols=81  Identities=9%  Similarity=0.143  Sum_probs=65.0

Q ss_pred             CcccCChhhHHhhhcCC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---------CcEEEEEeccCchhHHhhcCC
Q 017971          254 LSVPINQDTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANR---------ELVFCYVGIKQFADFADTFEA  322 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~---------~~~f~~vd~~~~~~~~~~~gi  322 (363)
                      .+.+++.+++..+...+  +++++.|+. .-....+.+...+.++++.++         .+.|+.||+++++.+++.|++
T Consensus        24 ~V~~Lt~~~F~~~l~~~~~k~VlV~FyA-~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V  102 (470)
T 3qcp_A           24 SVVDLSGDDFSRVHRVAPLCPWIVLFYN-DGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDI  102 (470)
T ss_dssp             TEEECSCSCGGGTCTTGGGSCEEEEEEC-TTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTC
T ss_pred             CcEECCHHHHHHHHHhCCCCeEEEEEEC-CCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCC
Confidence            36678888888755433  567777764 467777889999999999886         299999999999999999999


Q ss_pred             CCCCCCCeEEEEeCCC
Q 017971          323 NKKSKLPKMVVWDGNE  338 (363)
Q Consensus       323 ~~~~~~P~~vi~~~~~  338 (363)
                         ...|+++++++.|
T Consensus       103 ---~~~PTlilf~~gg  115 (470)
T 3qcp_A          103 ---NFVPRLFFFYPRD  115 (470)
T ss_dssp             ---CSSCEEEEEEESS
T ss_pred             ---CccCeEEEEECCC
Confidence               6899999997653

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=96.54  E-value=0.015  Score=44.79  Aligned_cols=84  Identities=8%  Similarity=0.087  Sum_probs=63.4

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--CcEEEEEeccC-------------------------chhHHhhcC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQ-------------------------FADFADTFE  321 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~-------------------------~~~~~~~~g  321 (363)
                      .++++++.|+ .............+.+++++++  ++.++.++.+.                         ...+.+.|+
T Consensus        33 ~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFW-TSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH  111 (145)
T ss_dssp             TTSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC
Confidence            5567777777 4567777888899999999987  48888887743                         446788888


Q ss_pred             CCCCCCCCeEEEEeCCCCe-eEEEEEEeehhhhhHh
Q 017971          322 ANKKSKLPKMVVWDGNENY-LTVSINVLKTRVCFFM  356 (363)
Q Consensus       322 i~~~~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~  356 (363)
                      +   ...|++++++++|+. +...+....+++..++
T Consensus       112 v---~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          112 I---ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             C---CEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             c---CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            8   578999999999864 4566666666666554

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=96.46  E-value=0.009  Score=51.24  Aligned_cols=82  Identities=17%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             CCCcccC-ChhhHHhhhc---CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCC
Q 017971          252 LPLSVPI-NQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK  327 (363)
Q Consensus       252 ~p~~~~l-t~~~~~~l~~---~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~  327 (363)
                      +..+.++ +..++.....   .++++++.|+. ......+.+...+..+|.+++++.|+.||+.. +.++..|++   ..
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya-~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~l~~~~~I---~~  185 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYE-DGIKGCDALNSSLICLAAEYPMVKFCKIKASN-TGAGDRFSS---DV  185 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEEC-TTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HCCTTSSCT---TT
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEEC-CCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HHHHHHCCC---CC
Confidence            3445667 6777776543   25666666664 46777788899999999999999999999976 668888888   67


Q ss_pred             CCeEEEEeCCCC
Q 017971          328 LPKMVVWDGNEN  339 (363)
Q Consensus       328 ~P~~vi~~~~~~  339 (363)
                      +|+++++. +|+
T Consensus       186 ~PTll~~~-~G~  196 (245)
T 1a0r_P          186 LPTLLVYK-GGE  196 (245)
T ss_dssp             CSEEEEEE-TTE
T ss_pred             CCEEEEEE-CCE
Confidence            99999997 553

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=96.33  E-value=0.0035  Score=48.50  Aligned_cols=68  Identities=21%  Similarity=0.275  Sum_probs=45.2

Q ss_pred             hhHHHhHcCCCeEEEEEEC----CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCcCcCCEEE
Q 017971           51 SNFDSAISSFDYILVDFYA----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTLK  122 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~----~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~  122 (363)
                      +.+++.+..+ .++|+.++    +||++|++....+.+.       +  +.+..+|.++++++.+.    .|...+|.++
T Consensus        26 ~~v~~~i~~~-~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-------g--v~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf   95 (135)
T 2wci_A           26 EKIQRQIAEN-PILLYMKGSPKLPSCGFSAQAVQALAAC-------G--ERFAYVDILQNPDIRAELPKYANWPTFPQLW   95 (135)
T ss_dssp             HHHHHHHHHC-SEEEEESBCSSSBSSHHHHHHHHHHHTT-------C--SCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred             HHHHHHhccC-CEEEEEEecCCCCCCccHHHHHHHHHHc-------C--CceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence            4566666654 34444443    8999999887777542       2  66778888877655443    4778899864


Q ss_pred             EEeCCEEE
Q 017971          123 IFMHGIPT  130 (363)
Q Consensus       123 ~~~~g~~~  130 (363)
                        .+|+.+
T Consensus        96 --I~G~~i  101 (135)
T 2wci_A           96 --VDGELV  101 (135)
T ss_dssp             --ETTEEE
T ss_pred             --ECCEEE
Confidence              577654

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=96.29  E-value=0.023  Score=43.85  Aligned_cols=87  Identities=13%  Similarity=0.145  Sum_probs=61.2

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CC--cEEEEEeccC-------------------------chhHHhhc
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASAN-RE--LVFCYVGIKQ-------------------------FADFADTF  320 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~-~~--~~f~~vd~~~-------------------------~~~~~~~~  320 (363)
                      .++++++.|+. ............+.++++++ ++  +.++.++.+.                         ...+.+.|
T Consensus        32 ~gk~vll~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (148)
T 3fkf_A           32 RNRYLLLNFWA-SWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQY  110 (148)
T ss_dssp             TTSEEEEEEEC-GGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred             CCcEEEEEEEC-CCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhc
Confidence            44677777763 34455667778888888887 44  7888876654                         34678889


Q ss_pred             CCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          321 EANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       321 gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      |+   ...|++++++++|+......  ..+.+..++..+|.
T Consensus       111 ~v---~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          111 AI---LTLPTNILLSPTGKILARDI--QGEALTGKLKELLK  146 (148)
T ss_dssp             TC---CSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHC-
T ss_pred             CC---CCcCEEEEECCCCeEEEecC--CHHHHHHHHHHHHc
Confidence            98   57899999999986443332  66677777777664

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=96.28  E-value=0.021  Score=44.54  Aligned_cols=89  Identities=11%  Similarity=0.123  Sum_probs=65.8

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccC----------------------chhHHhhcCCCC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ----------------------FADFADTFEANK  324 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~----------------------~~~~~~~~gi~~  324 (363)
                      .++++++.|+ .............+.++++++++  +.++.|+.+.                      ...+.+.||+  
T Consensus        25 ~gk~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v--  101 (151)
T 2f9s_A           25 KGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDV--  101 (151)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTC--
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCC--
Confidence            3467777666 44666777888888888887654  8888887654                      2357788888  


Q ss_pred             CCCCCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          325 KSKLPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       325 ~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                       ...|++++++++|+ .+...+....+.+..++..+|+
T Consensus       102 -~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~  138 (151)
T 2f9s_A          102 -SPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKP  138 (151)
T ss_dssp             -CSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             -CCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHh
Confidence             57899999999985 3445566778888888888775

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=95.23  E-value=0.00074  Score=51.67  Aligned_cols=95  Identities=12%  Similarity=0.093  Sum_probs=68.1

Q ss_pred             HHhhhcCCCcEEEEEEeCCChhhHHHHHHHH---HHHHHhCCC-cEEEEEecc--CchhHHhhcCCCCCCCCCeEEEEeC
Q 017971          263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANRE-LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDG  336 (363)
Q Consensus       263 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~~~~~-~~f~~vd~~--~~~~~~~~~gi~~~~~~P~~vi~~~  336 (363)
                      +......++++++.|+. ......+.+...+   .++++.+++ +.++.+|.+  +...+++.+|+   ...|+++++++
T Consensus        12 ~~~~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v---~~~Pt~~~~d~   87 (130)
T 2lst_A           12 LALAQAHGRMVMVYFHS-EHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRV---PGTPTFVFLVP   87 (130)
Confidence            33344455677766653 3455556667777   777777766 888888884  45778999999   67999999986


Q ss_pred             C-CCe---eEEEEEEeehhhhhHhhhhhc
Q 017971          337 N-ENY---LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       337 ~-~~y---~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      + |+.   ....+....+.+..++..+++
T Consensus        88 ~~G~~~~~~~~~G~~~~~~l~~~l~~~~~  116 (130)
T 2lst_A           88 KAGAWEEVGRLFGSRPRAEFLKELRQVCV  116 (130)
Confidence            4 653   567777788888888887764

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=96.22  E-value=0.026  Score=45.26  Aligned_cols=84  Identities=14%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             cCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971          257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG  336 (363)
Q Consensus       257 ~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~  336 (363)
                      .++......+.....+.+++.|-..-..........|.+++..++++.|..+|.++.+.....|+-......|++++++.
T Consensus        40 ~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~  119 (167)
T 1z6n_A           40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDE  119 (167)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECT
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECC
Confidence            34455555554333344444444556778888999999999998889999999988888888886211267899999999


Q ss_pred             CCCe
Q 017971          337 NENY  340 (363)
Q Consensus       337 ~~~y  340 (363)
                      +|+.
T Consensus       120 ~G~~  123 (167)
T 1z6n_A          120 EFNL  123 (167)
T ss_dssp             TCCE
T ss_pred             CCCE
Confidence            8764

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=96.21  E-value=0.032  Score=43.52  Aligned_cols=87  Identities=8%  Similarity=0.103  Sum_probs=61.9

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccC-------------------------chhHHhhcC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ-------------------------FADFADTFE  321 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~-------------------------~~~~~~~~g  321 (363)
                      .++++++.|+. ............++++++++++  +.++.|+.+.                         ...+.+.||
T Consensus        28 ~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (152)
T 2lrn_A           28 KGKYVLVDFWF-AGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC  106 (152)
T ss_dssp             TTSEEEEEEEC-TTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT
T ss_pred             CCCEEEEEEEC-CCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC
Confidence            34667766664 4555667778888888887665  8888887765                         456788899


Q ss_pred             CCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          322 ANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       322 i~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +   ...|++++++++|+.-...  +..+++..++..+++
T Consensus       107 v---~~~P~~~lid~~G~i~~~~--~~~~~l~~~l~~l~~  141 (152)
T 2lrn_A          107 I---VGFPHIILVDPEGKIVAKE--LRGDDLYNTVEKFVN  141 (152)
T ss_dssp             C---CSSCEEEEECTTSEEEEEC--CCTTHHHHHHHHHHT
T ss_pred             C---CcCCeEEEECCCCeEEEee--CCHHHHHHHHHHHHh
Confidence            8   5789999999998643322  345677777777765

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=96.04  E-value=0.053  Score=48.48  Aligned_cols=104  Identities=12%  Similarity=0.103  Sum_probs=70.6

Q ss_pred             CccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-------
Q 017971           33 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-------  104 (363)
Q Consensus        33 ~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-------  104 (363)
                      .|+.+.++.++..+.|++-       .++++++.|| +.||+.|....+.|.+.    +  ..++.+..|+++       
T Consensus         4 ~p~F~l~~~~G~~~~Lsd~-------~Gk~vvl~F~p~~~tp~C~~e~~~~~~~----~--~~~~~v~gis~D~~~~~~~   70 (322)
T 4eo3_A            4 VKHFELLTDEGKTFTHVDL-------YGKYTILFFFPKAGTSGSTREAVEFSRE----N--FEKAQVVGISRDSVEALKR   70 (322)
T ss_dssp             CCCCEEEETTSCEEEGGGT-------TTSEEEEEECSSTTSHHHHHHHHHHHHS----C--CTTEEEEEEESCCHHHHHH
T ss_pred             CCCcEEECCCcCEEeHHHh-------CCCeEEEEEECCCCCCCCHHHHHHHHHH----h--hCCCEEEEEeCCCHHHHHH
Confidence            4566667777888887753       5689999999 46899999887777541    1  123666666543       


Q ss_pred             --------------cchhhhhhCCcC----cCCEEEEEe-CCEEE-eecC---CCCHHHHHHHHHhhc
Q 017971          105 --------------KYSRLASKQEID----AFPTLKIFM-HGIPT-EYYG---PRKAELLVRYLKKFV  149 (363)
Q Consensus       105 --------------~~~~l~~~~~i~----~~Pt~~~~~-~g~~~-~y~g---~~~~~~i~~~i~~~~  149 (363)
                                    .+.++++.|||.    .+|+.++.. +|... .|.+   ...++++.+++++..
T Consensus        71 f~~~~~l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~  138 (322)
T 4eo3_A           71 FKEKNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLI  138 (322)
T ss_dssp             HHHHHTCCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHH
T ss_pred             HHHhhCCceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhc
Confidence                          345688889984    467877775 56543 2544   445788999988774

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=96.00  E-value=0.022  Score=48.22  Aligned_cols=41  Identities=7%  Similarity=0.199  Sum_probs=28.9

Q ss_pred             CCeEEEEEECCCChhhhhHHHHH-HHHHHHhhcCCCCeEEEEE
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQL-DEAAPILAKLKEPIVIAKV  101 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~-~~~a~~~~~~~~~v~~~~v  101 (363)
                      .+..++.|....|++|+++.+.. .++.+.+-+ .++|.+...
T Consensus        39 A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~-~g~V~~v~~   80 (226)
T 3f4s_A           39 APILMIEYASLTCYHCSLFHRNVFPKIKEKYID-TGKMLYIFR   80 (226)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTT-TTSEEEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHccc-CCeEEEEEE
Confidence            46789999999999999999964 667665521 123555433

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=95.99  E-value=0.021  Score=46.16  Aligned_cols=50  Identities=16%  Similarity=0.197  Sum_probs=35.3

Q ss_pred             HHHhHcCCCeEEEEEECCCChhhhh-HHHHHHHHHHHhhcCCCCe-EEEEEeCc
Q 017971           53 FDSAISSFDYILVDFYAPWCGHCKR-LAPQLDEAAPILAKLKEPI-VIAKVDAD  104 (363)
Q Consensus        53 f~~~l~~~~~~lv~fy~~~C~~C~~-~~~~~~~~a~~~~~~~~~v-~~~~vd~~  104 (363)
                      +.+.+.....+|+.|++.||+.|.. ..|.|.+..++++..+  + .+..|.++
T Consensus        41 Lsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g--~d~VigIS~D   92 (176)
T 4f82_A           41 VRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG--IDEIWCVSVN   92 (176)
T ss_dssp             HHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred             HHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC--CCEEEEEeCC
Confidence            4444434335566777999999999 9999999999988665  4 44445443

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=95.95  E-value=0.0095  Score=44.13  Aligned_cols=67  Identities=18%  Similarity=0.343  Sum_probs=43.6

Q ss_pred             hhHHHhHcCCCeEEEEEEC-----CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh----hCCcCcCCEE
Q 017971           51 SNFDSAISSFDYILVDFYA-----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEIDAFPTL  121 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~-----~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~----~~~i~~~Pt~  121 (363)
                      +.+++++++++ ++| |..     |||++|++....+.+.       +  +.+-.+|.++++++.+    ..+...+|.+
T Consensus         9 ~~v~~~i~~~~-Vvv-y~k~t~~~p~Cp~C~~ak~~L~~~-------g--i~~~~~dI~~~~~~~~~l~~~~g~~tvP~i   77 (109)
T 3ipz_A            9 DTLEKLVNSEK-VVL-FMKGTRDFPMCGFSNTVVQILKNL-------N--VPFEDVNILENEMLRQGLKEYSNWPTFPQL   77 (109)
T ss_dssp             HHHHHHHTSSS-EEE-EESBCSSSBSSHHHHHHHHHHHHT-------T--CCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred             HHHHHHHccCC-EEE-EEecCCCCCCChhHHHHHHHHHHc-------C--CCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence            34556666654 333 444     5999999988877753       1  5567788877655433    3478899977


Q ss_pred             EEEeCCEEE
Q 017971          122 KIFMHGIPT  130 (363)
Q Consensus       122 ~~~~~g~~~  130 (363)
                      +  .+|+.+
T Consensus        78 f--i~g~~i   84 (109)
T 3ipz_A           78 Y--IGGEFF   84 (109)
T ss_dssp             E--ETTEEE
T ss_pred             E--ECCEEE
Confidence            4  477554

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=95.92  E-value=0.061  Score=45.04  Aligned_cols=69  Identities=10%  Similarity=0.185  Sum_probs=46.9

Q ss_pred             CCCCCcccccc--CCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           29 RGLSSEEETKF--KIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        29 ~~~~~~~~~~~--~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      .|..+|+....  .++....+++-++|     .++.+++.|| +.||+.|......|.+...++++.+  +.+..|.++
T Consensus        28 vG~~APdF~~~a~l~d~~g~~vsLsd~-----~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g--~~vigiS~D   99 (219)
T 3tue_A           28 INSPAPSFEEVALMPNGSFKKISLSSY-----KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELN--CEVLACSID   99 (219)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEGGGG-----TTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTT--EEEEEEESS
T ss_pred             cCCcCCCCcccccccCCCCcEEehHHh-----CCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCC--cEEEEeeCC
Confidence            34456665421  12333334444444     4578889999 7899999999999999999998765  666666654

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=95.91  E-value=0.061  Score=41.83  Aligned_cols=91  Identities=11%  Similarity=0.041  Sum_probs=65.1

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccC------------------------chhHHhhcCC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ------------------------FADFADTFEA  322 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~------------------------~~~~~~~~gi  322 (363)
                      .++++++.|+. ............|.++++++++  +.++.|+.++                        ...+.+.||.
T Consensus        23 ~gk~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (151)
T 3raz_A           23 KAPVRIVNLWA-TWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGN  101 (151)
T ss_dssp             CSSEEEEEEEC-TTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTC
T ss_pred             CCCEEEEEEEc-CcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCC
Confidence            34677776664 4566677788888888888754  8888877652                        2345666772


Q ss_pred             CCCCCCCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          323 NKKSKLPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       323 ~~~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                       .....|++++++++|+ .+...+....+.+..++..++.
T Consensus       102 -~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~  140 (151)
T 3raz_A          102 -TVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHS  140 (151)
T ss_dssp             -CSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHT
T ss_pred             -ccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence             1267899999999986 4566777788888888887764

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.017  Score=43.69  Aligned_cols=68  Identities=18%  Similarity=0.214  Sum_probs=44.0

Q ss_pred             hhHHHhHcCCCeEEEEEEC----CCChhhhhHHHHHHHHHHHhhcCCCCeE---EEEEeCccchhhhh----hCCcCcCC
Q 017971           51 SNFDSAISSFDYILVDFYA----PWCGHCKRLAPQLDEAAPILAKLKEPIV---IAKVDADKYSRLAS----KQEIDAFP  119 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~----~~C~~C~~~~~~~~~~a~~~~~~~~~v~---~~~vd~~~~~~l~~----~~~i~~~P  119 (363)
                      +.+++++++++ ++|+-.+    |||++|++....+.+..         +.   +..+|...++++.+    ..|...+|
T Consensus         7 ~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g---------v~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP   76 (121)
T 3gx8_A            7 KAIEDAIESAP-VVLFMKGTPEFPKCGFSRATIGLLGNQG---------VDPAKFAAYNVLEDPELREGIKEFSEWPTIP   76 (121)
T ss_dssp             HHHHHHHHSCS-EEEEESBCSSSBCTTHHHHHHHHHHHHT---------BCGGGEEEEECTTCHHHHHHHHHHHTCCSSC
T ss_pred             HHHHHHhccCC-EEEEEeccCCCCCCccHHHHHHHHHHcC---------CCcceEEEEEecCCHHHHHHHHHHhCCCCCC
Confidence            34566676655 3333222    59999999988887642         43   66778877765433    34678899


Q ss_pred             EEEEEeCCEEE
Q 017971          120 TLKIFMHGIPT  130 (363)
Q Consensus       120 t~~~~~~g~~~  130 (363)
                      .++  .+|+.+
T Consensus        77 ~vf--I~g~~i   85 (121)
T 3gx8_A           77 QLY--VNKEFI   85 (121)
T ss_dssp             EEE--ETTEEE
T ss_pred             eEE--ECCEEE
Confidence            985  477654

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=95.81  E-value=0.013  Score=41.20  Aligned_cols=57  Identities=18%  Similarity=0.169  Sum_probs=39.2

Q ss_pred             EEEEECC----CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-----cchh----hhhhCCcC-----cCCEEEEEe
Q 017971           64 LVDFYAP----WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----KYSR----LASKQEID-----AFPTLKIFM  125 (363)
Q Consensus        64 lv~fy~~----~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----~~~~----l~~~~~i~-----~~Pt~~~~~  125 (363)
                      ++.|+.+    ||++|++....+++.       +  +.+-.+|.+     .+++    +.+..|..     ++|++++ .
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~-------g--i~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i-~   71 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK-------K--QPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-P   71 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT-------T--CCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-T
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc-------C--CCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE-E
Confidence            4668889    999999887776652       2  556677777     5533    56667777     8999764 2


Q ss_pred             CCEEE
Q 017971          126 HGIPT  130 (363)
Q Consensus       126 ~g~~~  130 (363)
                      +|+.+
T Consensus        72 ~g~~i   76 (87)
T 1aba_A           72 DGSHI   76 (87)
T ss_dssp             TSCEE
T ss_pred             CCEEE
Confidence            55543

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=95.74  E-value=0.059  Score=41.95  Aligned_cols=86  Identities=12%  Similarity=0.030  Sum_probs=66.7

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEec---------------------------cCchhHHhhcCCC
Q 017971          271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGI---------------------------KQFADFADTFEAN  323 (363)
Q Consensus       271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~---------------------------~~~~~~~~~~gi~  323 (363)
                      +++++.|+. ............+.++++++ ++.++.|+.                           .....+.+.||+ 
T Consensus        31 k~vll~f~~-~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v-  107 (154)
T 3ia1_A           31 KPAVIVFWA-SWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKV-  107 (154)
T ss_dssp             SSEEEEEEC-TTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSB-
T ss_pred             CeEEEEEEc-ccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCC-
Confidence            677777774 46667778888889888888 888888877                           245667888888 


Q ss_pred             CCCCCCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          324 KKSKLPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       324 ~~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                        ...|++++++++|+ .+...+....+.+..++...+.
T Consensus       108 --~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~  144 (154)
T 3ia1_A          108 --LGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGA  144 (154)
T ss_dssp             --CSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTC
T ss_pred             --CcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccC
Confidence              57899999999986 4556677788888888887664

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=95.71  E-value=0.074  Score=40.06  Aligned_cols=86  Identities=12%  Similarity=0.028  Sum_probs=60.7

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEecc----------------------------CchhHHhh
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK----------------------------QFADFADT  319 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~----------------------------~~~~~~~~  319 (363)
                      .++++++.|+ .............+.++++++++ +.++.++..                            ....+.+.
T Consensus        21 ~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   99 (138)
T 4evm_A           21 KGKKVYLKFW-ASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLET   99 (138)
T ss_dssp             TTSEEEEEEC-CTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHH
T ss_pred             CCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHH
Confidence            3466666665 44566677888888888888775 888777421                            12357778


Q ss_pred             cCCCCCCCCCeEEEEeCCCCe-eEEEEEEeehhhhhHhhh
Q 017971          320 FEANKKSKLPKMVVWDGNENY-LTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       320 ~gi~~~~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~  358 (363)
                      ||+   ...|++++++++|+. +...+....+.+..++..
T Consensus       100 ~~v---~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A          100 YGV---RSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             TTC---CSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred             cCc---ccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHh
Confidence            888   578999999999864 455666677777776654

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=95.64  E-value=0.092  Score=41.09  Aligned_cols=88  Identities=9%  Similarity=0.008  Sum_probs=63.4

Q ss_pred             CCcEEEEEEeCCChhhHHH-HHHHHHHHHHhCCC--cEEEEEecc----------------------------Cchh---
Q 017971          270 KRKIVLAIVEDETEEKSQK-LVTTLKAAASANRE--LVFCYVGIK----------------------------QFAD---  315 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~-~~~~l~~~a~~~~~--~~f~~vd~~----------------------------~~~~---  315 (363)
                      ++++++.|+.. ....... ....|+++++++++  +.++.|+..                            ....   
T Consensus        30 gk~vlv~F~a~-~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           30 GKVVVVEVFQM-LCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TSEEEEEEECT-TCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCEEEEEEEcC-CCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            46777777654 5666666 57888888888875  777777641                            1122   


Q ss_pred             ---HHhhcCCCCCCCCCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          316 ---FADTFEANKKSKLPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       316 ---~~~~~gi~~~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                         +.+.||+   ...|++++++++|+ .+...+....+++...+..+|+
T Consensus       109 ~~~~~~~~~v---~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  155 (160)
T 3lor_A          109 IPSTMKKYRL---EGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS  155 (160)
T ss_dssp             SCHHHHHTTC---CSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             hhhHHHhccc---CccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence               6777888   56899999999986 4455677778888888888875

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.63  E-value=0.049  Score=42.34  Aligned_cols=89  Identities=8%  Similarity=-0.027  Sum_probs=62.8

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEec-----------------------cCchhHHhhcCCC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGI-----------------------KQFADFADTFEAN  323 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~-----------------------~~~~~~~~~~gi~  323 (363)
                      .++++++.|+. ............++++++++++  +.++.++.                       +....+.+.||+ 
T Consensus        27 ~gk~~lv~f~~-~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i-  104 (153)
T 2l5o_A           27 QGKVTLINFWF-PSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGT-  104 (153)
T ss_dssp             TTCEEEEEEEC-TTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTC-
T ss_pred             CCCEEEEEEEC-CCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCC-
Confidence            34666666664 3555567777788888877664  66665542                       223567888888 


Q ss_pred             CCCCCCeEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          324 KKSKLPKMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       324 ~~~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                        ...|++++++++|+. +...+....+++..++..+|+
T Consensus       105 --~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  141 (153)
T 2l5o_A          105 --QVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWR  141 (153)
T ss_dssp             --CSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred             --CccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence              568999999999863 455666777888888888875

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=95.59  E-value=0.096  Score=40.65  Aligned_cols=89  Identities=11%  Similarity=0.099  Sum_probs=62.6

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCc-----------------------hhHHhhcCCC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQF-----------------------ADFADTFEAN  323 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~-----------------------~~~~~~~gi~  323 (363)
                      .++++++.|+ .............+.++++++++  +.++.++.+..                       ..+.+.||+ 
T Consensus        27 ~gk~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-  104 (154)
T 3kcm_A           27 KGQVVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGT-  104 (154)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTC-
T ss_pred             CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCC-
Confidence            4467777776 45666777888889999888876  78888777653                       236777888 


Q ss_pred             CCCCCCeEEEEeCCCCe-eEEEEEE--eehhhhhHhhhhhc
Q 017971          324 KKSKLPKMVVWDGNENY-LTVSINV--LKTRVCFFMLTLLQ  361 (363)
Q Consensus       324 ~~~~~P~~vi~~~~~~y-~~~~~~~--~~~~~~~~~~~~~~  361 (363)
                        ...|.+++++++|+. +...+..  ....+..++..+++
T Consensus       105 --~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~  143 (154)
T 3kcm_A          105 --TGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELS  143 (154)
T ss_dssp             --CSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC--
T ss_pred             --CCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHH
Confidence              678999999999864 3344443  45577787777654

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=95.54  E-value=0.017  Score=41.30  Aligned_cols=56  Identities=14%  Similarity=0.086  Sum_probs=38.4

Q ss_pred             EEEEECCCChhh------hhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCC--cCcCCEEEEEeCCEEE
Q 017971           64 LVDFYAPWCGHC------KRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQE--IDAFPTLKIFMHGIPT  130 (363)
Q Consensus        64 lv~fy~~~C~~C------~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~--i~~~Pt~~~~~~g~~~  130 (363)
                      ++.|++++|++|      ++....+++       .+  +.+-.+|.+.+++    +.+..|  ...+|.++  .+|+.+
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~-------~~--i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~if--i~g~~i   71 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDG-------KR--IQYQLVDISQDNALRDEMRTLAGNPKATPPQIV--NGNHYC   71 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH-------TT--CCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE--ETTEEE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHH-------CC--CceEEEECCCCHHHHHHHHHHhCCCCCCCCEEE--ECCEEE
Confidence            667899999999      565554442       22  6678889887644    444667  67999875  466544

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=95.54  E-value=0.013  Score=43.46  Aligned_cols=67  Identities=16%  Similarity=0.269  Sum_probs=44.8

Q ss_pred             hhHHHhHcCCCeEEEEEEC-----CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCcCcCCEE
Q 017971           51 SNFDSAISSFDYILVDFYA-----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTL  121 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~-----~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~  121 (363)
                      +..++++++++  +|.|..     +||++|++....+.+.       +  +.+-.+|.+.++++.+.    .|...+|.+
T Consensus         7 ~~v~~~i~~~~--Vvlf~kg~~~~~~Cp~C~~ak~~L~~~-------g--i~y~~~di~~d~~~~~~l~~~~g~~tvP~i   75 (111)
T 3zyw_A            7 LRLKKLTHAAP--CMLFMKGTPQEPRCGFSKQMVEILHKH-------N--IQFSSFDIFSDEEVRQGLKAYSSWPTYPQL   75 (111)
T ss_dssp             HHHHHHHTSSS--EEEEESBCSSSBSSHHHHHHHHHHHHT-------T--CCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred             HHHHHHHhcCC--EEEEEecCCCCCcchhHHHHHHHHHHc-------C--CCeEEEECcCCHHHHHHHHHHHCCCCCCEE
Confidence            34555666543  344677     9999999988777642       1  55677888777655433    377889998


Q ss_pred             EEEeCCEEE
Q 017971          122 KIFMHGIPT  130 (363)
Q Consensus       122 ~~~~~g~~~  130 (363)
                      ++  +|+.+
T Consensus        76 fi--~g~~i   82 (111)
T 3zyw_A           76 YV--SGELI   82 (111)
T ss_dssp             EE--TTEEE
T ss_pred             EE--CCEEE
Confidence            54  67544

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=95.51  E-value=0.028  Score=47.94  Aligned_cols=59  Identities=12%  Similarity=0.215  Sum_probs=43.5

Q ss_pred             CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch---hhhhhCCcCcCCEEEEEeCCEEE
Q 017971           61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS---RLASKQEIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~~~~g~~~  130 (363)
                      ...++.|+.+||++|++....+++.     +    +.+-.+|.+.++   ++.+.++..++|+++  .+|+.+
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~-----~----i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~--~~g~~i  230 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK-----G----LSFEEIILGHDATIVSVRAVSGRTTVPQVF--IGGKHI  230 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH-----T----CCCEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTEEE
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc-----C----CceEEEECCCchHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence            4567789999999999998877753     1    455667776554   377788999999985  466543

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=95.48  E-value=0.041  Score=42.73  Aligned_cols=88  Identities=11%  Similarity=0.137  Sum_probs=60.9

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCch-----------------------hHHhhcCCCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA-----------------------DFADTFEANK  324 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~-----------------------~~~~~~gi~~  324 (363)
                      ++++++.|+ .............++++++++++  +.++.|+.+...                       .+.+.||+  
T Consensus        30 gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v--  106 (152)
T 2lja_A           30 GKYIYIDVW-ATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLI--  106 (152)
T ss_dssp             TSEEEEEEC-CSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTC--
T ss_pred             CCEEEEEEE-CCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCc--
Confidence            456666655 33455556667777777777764  788888766532                       57778888  


Q ss_pred             CCCCCeEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          325 KSKLPKMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       325 ~~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                       ...|++++++++|+. +...+....+++..++..+++
T Consensus       107 -~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~  143 (152)
T 2lja_A          107 -NGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLG  143 (152)
T ss_dssp             -CSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHT
T ss_pred             -CCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhc
Confidence             578999999998863 334456667788888877664

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=95.47  E-value=0.12  Score=40.04  Aligned_cols=89  Identities=10%  Similarity=0.028  Sum_probs=61.1

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCch----------------------hHHhhcCCCC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA----------------------DFADTFEANK  324 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~----------------------~~~~~~gi~~  324 (363)
                      .++++++.|+ .............|.++++++++  +.++.++.+..+                      .+.+.||+  
T Consensus        27 ~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v--  103 (152)
T 3gl3_A           27 TGSVVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGV--  103 (152)
T ss_dssp             TTSEEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTC--
T ss_pred             CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCC--
Confidence            3466776666 44566677778888888887765  888888776433                      45677888  


Q ss_pred             CCCCCeEEEEeCCCCee-EEEEEE--eehhhhhHhhhhhc
Q 017971          325 KSKLPKMVVWDGNENYL-TVSINV--LKTRVCFFMLTLLQ  361 (363)
Q Consensus       325 ~~~~P~~vi~~~~~~y~-~~~~~~--~~~~~~~~~~~~~~  361 (363)
                       ...|++++++++|+.- ...+..  ..+++..++...++
T Consensus       104 -~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~  142 (152)
T 3gl3_A          104 -KGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALG  142 (152)
T ss_dssp             -CSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC
T ss_pred             -CCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHc
Confidence             5789999999998643 333322  23577777776653

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.46  E-value=0.022  Score=42.30  Aligned_cols=57  Identities=16%  Similarity=0.091  Sum_probs=38.3

Q ss_pred             EEEEEECCCChhhh------hHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhC--------CcCcCCEEEEE
Q 017971           63 ILVDFYAPWCGHCK------RLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQ--------EIDAFPTLKIF  124 (363)
Q Consensus        63 ~lv~fy~~~C~~C~------~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~--------~i~~~Pt~~~~  124 (363)
                      .++.|+.++|++|+      +....+++       .+  +.+-.+|.+.+++    +.+.+        +...+|.++  
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~-------~g--i~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vf--   77 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEA-------NK--IEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIF--   77 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHH-------TT--CCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEE--
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHH-------cC--CCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEE--
Confidence            46778999999998      44444432       22  7788899987755    33444        667789875  


Q ss_pred             eCCEEE
Q 017971          125 MHGIPT  130 (363)
Q Consensus       125 ~~g~~~  130 (363)
                      .+|+.+
T Consensus        78 i~g~~i   83 (111)
T 2ct6_A           78 NGDRYC   83 (111)
T ss_dssp             ETTEEE
T ss_pred             ECCEEE
Confidence            466544

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=95.33  E-value=0.031  Score=44.13  Aligned_cols=102  Identities=6%  Similarity=-0.006  Sum_probs=67.7

Q ss_pred             ccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--CcEEEEEec-----------------------
Q 017971          256 VPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGI-----------------------  310 (363)
Q Consensus       256 ~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~-----------------------  310 (363)
                      ..++...+......++++++.|+ .............|.+++++++  ++.++.|+.                       
T Consensus        24 ~~~~g~~~~~~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~  102 (164)
T 2h30_A           24 KTADNRPASVYLKKDKPTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPK  102 (164)
T ss_dssp             EETTSSBGGGGCCTTSCEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTT
T ss_pred             CCCCCCEeeHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCc
Confidence            33444433333344567777776 4456667777888888887743  355555432                       


Q ss_pred             -----cCchhHHhhcCCCCCCCCCeEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          311 -----KQFADFADTFEANKKSKLPKMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       311 -----~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                           +....+.+.||+   ...|++++++++|+. +...+....+.+..++..+|+
T Consensus       103 ~~~~~d~~~~~~~~~~v---~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          103 LPVVTDNGGTIAQNLNI---SVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             SCEEECTTCHHHHHTTC---CSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             ceEEEcCchHHHHHcCC---CccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                 223457778888   578999999999863 455677788889998888764

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=95.20  E-value=0.013  Score=48.29  Aligned_cols=39  Identities=21%  Similarity=0.497  Sum_probs=30.3

Q ss_pred             CeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEe
Q 017971           61 DYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVD  102 (363)
Q Consensus        61 ~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd  102 (363)
                      ++.+|.|++.||+||+++.|.+   .++.+.+.+   ++.|..++
T Consensus        22 ~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~---~v~~~~~~   63 (191)
T 3l9s_A           22 EPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPE---GTKMTKYH   63 (191)
T ss_dssp             SSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCT---TCCEEEEE
T ss_pred             CCeEEEEECCCChhHHHhChhccchHHHHHhCCC---CcEEEEEe
Confidence            7899999999999999999986   677776643   24454444

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=95.15  E-value=0.12  Score=40.03  Aligned_cols=86  Identities=6%  Similarity=0.142  Sum_probs=57.1

Q ss_pred             CCcEEEEEEeCCChhh--HHHHHHHHHHHHHhC-C--CcEEEEEeccCch-------------------------hHHhh
Q 017971          270 KRKIVLAIVEDETEEK--SQKLVTTLKAAASAN-R--ELVFCYVGIKQFA-------------------------DFADT  319 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~--~~~~~~~l~~~a~~~-~--~~~f~~vd~~~~~-------------------------~~~~~  319 (363)
                      ++++++.|+.. ....  .......|.++.+++ +  ++.++.|+.+..+                         .+.+.
T Consensus        33 gk~vll~F~a~-~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           33 QKSLLINFWAS-WNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TSEEEEEEECT-TCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCEEEEEEEeC-CCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            46676666654 4444  566677777777776 3  3777777665432                         57778


Q ss_pred             cCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          320 FEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       320 ~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ||+   ...|+++++|++|+.-...  +..+.++..+..+|+
T Consensus       112 ~~v---~~~P~~~lid~~G~i~~~~--~~~~~l~~~l~~ll~  148 (150)
T 3fw2_A          112 YSI---YKIPANILLSSDGKILAKN--LRGEELKKKIENIVE  148 (150)
T ss_dssp             TTC---CSSSEEEEECTTSBEEEES--CCHHHHHHHHHHHHH
T ss_pred             cCC---CccCeEEEECCCCEEEEcc--CCHHHHHHHHHHHHh
Confidence            888   5789999999999643333  255666776666653

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=95.10  E-value=0.11  Score=40.35  Aligned_cols=87  Identities=6%  Similarity=0.034  Sum_probs=60.3

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccC-----------------------chhHHhhcCCCCCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ-----------------------FADFADTFEANKKS  326 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~-----------------------~~~~~~~~gi~~~~  326 (363)
                      ++++++.|+. ............+++++++ .++.|+.++.++                       ...+.+.+|+   .
T Consensus        42 gk~~ll~f~~-~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v---~  116 (156)
T 1kng_A           42 GKVSLVNVWA-SWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGV---Y  116 (156)
T ss_dssp             TSCEEEEEEC-TTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTC---C
T ss_pred             CCEEEEEEEc-ccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCc---C
Confidence            5677777764 4566677778888887766 447777776532                       2356677887   5


Q ss_pred             CCCeEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          327 KLPKMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       327 ~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ..|++++++++|+. +...+....+.+..++..+|+
T Consensus       117 ~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~  152 (156)
T 1kng_A          117 GVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQME  152 (156)
T ss_dssp             SSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             ccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence            78999999999864 345566666777777766653

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=95.08  E-value=0.14  Score=40.06  Aligned_cols=68  Identities=10%  Similarity=0.172  Sum_probs=53.5

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--CcEEEEEeccC-------------------chhHHhhcCCCCCCC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQ-------------------FADFADTFEANKKSK  327 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~-------------------~~~~~~~~gi~~~~~  327 (363)
                      .++++++.|+ .............+++++++++  ++.++.++.+.                   ...+.+.||+   ..
T Consensus        40 ~gk~vll~F~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v---~~  115 (158)
T 3hdc_A           40 RGKIVLVNFW-ASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGA---NR  115 (158)
T ss_dssp             TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTC---CS
T ss_pred             CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCC---CC
Confidence            3467777777 4466677788899999999987  38888888765                   4568888998   57


Q ss_pred             CCeEEEEeCCCCe
Q 017971          328 LPKMVVWDGNENY  340 (363)
Q Consensus       328 ~P~~vi~~~~~~y  340 (363)
                      .|++++++++|+.
T Consensus       116 ~P~~~lid~~G~i  128 (158)
T 3hdc_A          116 LPDTFIVDRKGII  128 (158)
T ss_dssp             SSEEEEECTTSBE
T ss_pred             cceEEEEcCCCCE
Confidence            8999999999863

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=94.88  E-value=0.051  Score=43.79  Aligned_cols=90  Identities=11%  Similarity=0.184  Sum_probs=60.4

Q ss_pred             HHHhhcCCCcc--cCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHH-HH--HHHHHhCC-CcEEEEEeccCchhHHhh
Q 017971          246 FIKQNFLPLSV--PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVT-TL--KAAASANR-ELVFCYVGIKQFADFADT  319 (363)
Q Consensus       246 fi~~~~~p~~~--~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~l--~~~a~~~~-~~~f~~vd~~~~~~~~~~  319 (363)
                      ++.+|....+.  ..+.+.+......++|+++-|..+ -....+.+.. .+  .++++... ++.++.||.++.+.+.+.
T Consensus        13 yl~~ha~~~v~W~~~~~ea~~~A~~~~KpVlvdF~A~-WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~   91 (173)
T 3ira_A           13 YLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYS-TCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNI   91 (173)
T ss_dssp             HHHTTTTSSSCCBCSSHHHHHHHHHHTCCEEEEEECT-TCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHH
T ss_pred             HHHhccCCCCCCCCcCHHHHHHHHHhCCCEEEecccc-hhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHH
Confidence            45555444443  334577777777788998888743 4555555444 11  34444443 388999999987777766


Q ss_pred             c--------CCCCCCCCCeEEEEeCCCC
Q 017971          320 F--------EANKKSKLPKMVVWDGNEN  339 (363)
Q Consensus       320 ~--------gi~~~~~~P~~vi~~~~~~  339 (363)
                      +        |+   ...|++++++++|+
T Consensus        92 y~~~~q~~~gv---~g~Pt~v~l~~dG~  116 (173)
T 3ira_A           92 YMTVCQIILGR---GGWPLNIIMTPGKK  116 (173)
T ss_dssp             HHHHHHHHHSC---CCSSEEEEECTTSC
T ss_pred             HHHHHHHHcCC---CCCcceeeECCCCC
Confidence            6        77   67999999999885

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=94.88  E-value=0.06  Score=41.43  Aligned_cols=85  Identities=15%  Similarity=0.157  Sum_probs=53.7

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchh-------------------------HHhhcC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFAD-------------------------FADTFE  321 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~-------------------------~~~~~g  321 (363)
                      .++++++.|+.. ...........+.++++++++  +.++.|+.+..+.                         +.+.||
T Consensus        30 ~gk~vll~f~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (148)
T 3hcz_A           30 QAKYTILFFWDS-QCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD  108 (148)
T ss_dssp             CCSEEEEEEECG-GGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC
T ss_pred             CCCEEEEEEECC-CCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcC
Confidence            346676666643 344455566677777776654  8888887765444                         777788


Q ss_pred             CCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhh
Q 017971          322 ANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTL  359 (363)
Q Consensus       322 i~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~  359 (363)
                      +   ...|++++++++|+.....  .-...+..++..+
T Consensus       109 i---~~~P~~~lid~~G~i~~~~--~g~~~~~~~l~~l  141 (148)
T 3hcz_A          109 I---YATPVLYVLDKNKVIIAKR--IGYENLDDFLVQY  141 (148)
T ss_dssp             C---CSSCEEEEECTTCBEEEES--CCGGGHHHHHHHH
T ss_pred             c---CCCCEEEEECCCCcEEEec--CCHHHHHHHHHHH
Confidence            7   5789999999998643221  1124555555444

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=94.84  E-value=0.014  Score=46.59  Aligned_cols=98  Identities=10%  Similarity=0.082  Sum_probs=64.6

Q ss_pred             hHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchh-HHhhcCCCCCCCCCeEEEEeCCCC
Q 017971          262 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFAD-FADTFEANKKSKLPKMVVWDGNEN  339 (363)
Q Consensus       262 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~-~~~~~gi~~~~~~P~~vi~~~~~~  339 (363)
                      .+......++++++.|+. .-....+.+...+.+++..+.. +.|+.||.+..+. ....+++ .....|++++++++|+
T Consensus        38 ~~~~~~~~~k~vlv~F~a-~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~-~~~~~Pt~~~~d~~G~  115 (164)
T 1sen_A           38 GKKEAAASGLPLMVIIHK-SWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP-DGGYIPRILFLDPSGK  115 (164)
T ss_dssp             HHHHHHHHTCCEEEEEEC-TTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCT-TCSCSSEEEEECTTSC
T ss_pred             HHHHHHhcCCeEEEEEEC-CCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcc-cCCcCCeEEEECCCCC
Confidence            344444556788887774 4667777778888776655443 7778888876655 6778888 3456899999988874


Q ss_pred             e-eEEEE----------EEeehhhhhHhhhhhc
Q 017971          340 Y-LTVSI----------NVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       340 y-~~~~~----------~~~~~~~~~~~~~~~~  361 (363)
                      - ....+          ....+++...+..+|+
T Consensus       116 ~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~  148 (164)
T 1sen_A          116 VHPEIINENGNPSYKYFYVSAEQVVQGMKEAQE  148 (164)
T ss_dssp             BCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCccchhcccCCHHHHHHHHHHHHH
Confidence            2 22233          2456667776666553

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=94.83  E-value=0.13  Score=40.72  Aligned_cols=87  Identities=8%  Similarity=-0.023  Sum_probs=59.6

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEec-----------------------cCchhHHhhcCCCCC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGI-----------------------KQFADFADTFEANKK  325 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~-----------------------~~~~~~~~~~gi~~~  325 (363)
                      .++++++.|+. ............+.+++++  ++.++.|+.                       +....+.+.||+   
T Consensus        50 ~gk~vll~F~a-~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v---  123 (168)
T 2b1k_A           50 QGKPVLLNVWA-TWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV---  123 (168)
T ss_dssp             CSSCEEEEEEC-TTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTC---
T ss_pred             CCCEEEEEEEC-CCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCc---
Confidence            45677777764 3556666777777777765  566666652                       223457777888   


Q ss_pred             CCCCeEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          326 SKLPKMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       326 ~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ...|+.++++++|+. +...+....+.+..++..+|+
T Consensus       124 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  160 (168)
T 2b1k_A          124 YGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  160 (168)
T ss_dssp             CSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHH
T ss_pred             cccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            568999999999864 455666777788887777664

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=94.82  E-value=0.18  Score=39.34  Aligned_cols=88  Identities=13%  Similarity=0.031  Sum_probs=63.2

Q ss_pred             CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCC--cEEEEEecc----------------------------Cch----
Q 017971          270 KRKIVLAIVEDETEEKSQKL-VTTLKAAASANRE--LVFCYVGIK----------------------------QFA----  314 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~-~~~l~~~a~~~~~--~~f~~vd~~----------------------------~~~----  314 (363)
                      ++++++.|+. ......... ...|.++++++++  +.++.|+.+                            ...    
T Consensus        28 gk~vlv~f~a-~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           28 GKVIVIEAFQ-MLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TSEEEEEEEC-TTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCEEEEEEEC-CcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            4677776664 355666664 7888888888873  777777642                            111    


Q ss_pred             -hHHhhcCCCCCCCCCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          315 -DFADTFEANKKSKLPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       315 -~~~~~~gi~~~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                       .+.+.||+   ...|++++++++|+ .+...+....+++...+..+|.
T Consensus       107 ~~~~~~~~v---~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  152 (158)
T 3eyt_A          107 PRTMAAYQM---RGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLG  152 (158)
T ss_dssp             CHHHHHTTC---CSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCC---CCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhc
Confidence             46778888   57899999999986 3455677778888888888875

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=94.57  E-value=0.27  Score=39.60  Aligned_cols=91  Identities=9%  Similarity=0.037  Sum_probs=62.8

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--CcEEEEEeccCc-----hhHHhhcCCC------C------------
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQF-----ADFADTFEAN------K------------  324 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~~-----~~~~~~~gi~------~------------  324 (363)
                      ++++++.|+. ............|+++.++++  ++.++.|+.+..     .++++.+++.      +            
T Consensus        60 gk~vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           60 GKTLLVNLWA-TWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TSEEEEEEEC-TTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCEEEEEEEe-CCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            4667777664 456667777888888888776  477777766532     5677777761      0            


Q ss_pred             --CCCCCeEEEEeCCCCe-eEEEEEEe--ehhhhhHhhhhhc
Q 017971          325 --KSKLPKMVVWDGNENY-LTVSINVL--KTRVCFFMLTLLQ  361 (363)
Q Consensus       325 --~~~~P~~vi~~~~~~y-~~~~~~~~--~~~~~~~~~~~~~  361 (363)
                        ....|++++++++|+. +...+...  ..++..++..+|.
T Consensus       139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  180 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  180 (186)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhc
Confidence              0268999999999864 34445443  5788888888775

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=94.56  E-value=0.12  Score=41.61  Aligned_cols=92  Identities=13%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--c------EEEEEeccC-ch----hHHhhcCCC------------
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--L------VFCYVGIKQ-FA----DFADTFEAN------------  323 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~------~f~~vd~~~-~~----~~~~~~gi~------------  323 (363)
                      .++++++.|+. ............|+++++++++  +      .|+.|+.+. .+    ++++.+++.            
T Consensus        58 ~gk~vlv~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  136 (183)
T 3lwa_A           58 ENQVVILNAWG-QWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTA  136 (183)
T ss_dssp             TTSEEEEEEEC-TTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGG
T ss_pred             CCCEEEEEEEC-CcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHH
Confidence            34677777764 4566677777788887776653  6      898888776 33    344443431            


Q ss_pred             ------CCCCCCeEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          324 ------KKSKLPKMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       324 ------~~~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                            .....|..++++++|+. +...+....+.+..++..+|+
T Consensus       137 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          137 ASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             GGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                  12568999999999864 455677788889999888875

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=94.53  E-value=0.11  Score=34.97  Aligned_cols=70  Identities=16%  Similarity=0.049  Sum_probs=50.2

Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEE-eehhhh
Q 017971          276 AIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINV-LKTRVC  353 (363)
Q Consensus       276 ~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~-~~~~~~  353 (363)
                      .|+.+ .....+.....+++++.++.+ +.+..+|   ..++++.+|+   ...|++++   +|+.... |.. ..++++
T Consensus         5 ~f~a~-wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v---~~~Pt~~~---~G~~~~~-G~~~~~~~l~   73 (77)
T 1ilo_A            5 QIYGT-GCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGL---TALPGLAV---DGELKIM-GRVASKEEIK   73 (77)
T ss_dssp             EEECS-SSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTC---SSSSCEEE---TTEEEEC-SSCCCHHHHH
T ss_pred             EEEcC-CChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCC---CcCCEEEE---CCEEEEc-CCCCCHHHHH
Confidence            34433 556667788888999998875 8899998   5678899999   67899998   5554332 555 566666


Q ss_pred             hHh
Q 017971          354 FFM  356 (363)
Q Consensus       354 ~~~  356 (363)
                      .++
T Consensus        74 ~~l   76 (77)
T 1ilo_A           74 KIL   76 (77)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            654

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=94.15  E-value=0.21  Score=40.62  Aligned_cols=86  Identities=14%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEecc-----------------------------CchhHHhhc
Q 017971          272 KIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK-----------------------------QFADFADTF  320 (363)
Q Consensus       272 ~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~-----------------------------~~~~~~~~~  320 (363)
                      ++++.|+ .............|.++.+++++  +.++.|+.+                             ....+.+.|
T Consensus        48 ~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  126 (196)
T 2ywi_A           48 ATVIMFI-CNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAY  126 (196)
T ss_dssp             EEEEEEC-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHH
T ss_pred             eEEEEEe-CCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHh
Confidence            3555554 34555666667777777776653  777777652                             223567777


Q ss_pred             CCCCCCCCCeEEEEeCCCCeeEE----------EEEEeehhhhhHhhhhhc
Q 017971          321 EANKKSKLPKMVVWDGNENYLTV----------SINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       321 gi~~~~~~P~~vi~~~~~~y~~~----------~~~~~~~~~~~~~~~~~~  361 (363)
                      |+   ...|++++++++|+....          .+....+++...+..+|+
T Consensus       127 ~v---~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~  174 (196)
T 2ywi_A          127 DA---ACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLE  174 (196)
T ss_dssp             TC---CEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHH
T ss_pred             CC---CCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHc
Confidence            77   567999999999864433          455677888888888774

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=94.14  E-value=0.078  Score=42.33  Aligned_cols=91  Identities=14%  Similarity=0.130  Sum_probs=59.7

Q ss_pred             hcCCCcEEEEEEeCCChhhHHHHHHHH---HHHHHhCC-CcEEEEEeccCchhH--------------------------
Q 017971          267 KDDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANR-ELVFCYVGIKQFADF--------------------------  316 (363)
Q Consensus       267 ~~~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~~~~-~~~f~~vd~~~~~~~--------------------------  316 (363)
                      ...++++++.|..+ -....+.+...+   ..+.+.++ ++.++.+|.++.+..                          
T Consensus        44 ~~~gk~vlv~F~A~-WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (172)
T 3f9u_A           44 RQHNKPVMLDFTGY-GCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQ  122 (172)
T ss_dssp             HHTTCCEEEEEECT-TCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             HHcCCeEEEEEECC-CCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHH
Confidence            35677888877754 455555542222   33333333 488999998754433                          


Q ss_pred             HhhcCCCCCCCCCeEEEEeCCCC-eeEEEEEEe-ehhhhhHhhhhhc
Q 017971          317 ADTFEANKKSKLPKMVVWDGNEN-YLTVSINVL-KTRVCFFMLTLLQ  361 (363)
Q Consensus       317 ~~~~gi~~~~~~P~~vi~~~~~~-y~~~~~~~~-~~~~~~~~~~~~~  361 (363)
                      .+.+|+   ...|++++++++|+ .....|... .+.+..++...|+
T Consensus       123 ~~~~~v---~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~  166 (172)
T 3f9u_A          123 RVKFGA---NAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLE  166 (172)
T ss_dssp             HHHHSC---CCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHH
T ss_pred             HHHcCC---CCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHH
Confidence            678888   67999999999884 344457776 7788888777653

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=94.05  E-value=0.042  Score=47.43  Aligned_cols=81  Identities=12%  Similarity=0.121  Sum_probs=52.2

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc------------------cchhhhhhCCcCcC--
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD------------------KYSRLASKQEIDAF--  118 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~------------------~~~~l~~~~~i~~~--  118 (363)
                      +....+..|++++|++|.+....+.+.+....     +....++.+                  ..+.+.+++|..++  
T Consensus        41 ~~~~~VelyTs~gCp~C~~Ak~lL~~~~~~~~-----vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyT  115 (270)
T 2axo_A           41 AVKGVVELFTSQGCASCPPADEALRKMIQKGD-----VVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYT  115 (270)
T ss_dssp             CCCCEEEEEECTTCTTCHHHHHHHHHHHHHTS-----SEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCS
T ss_pred             CCCcEEEEEeCCCCCChHHHHHHHHHhhccCC-----eeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccC
Confidence            33467778999999999999999998876421     422222221                  12347788999988  


Q ss_pred             CEEEEEeCCEEEeecCCCCHHHHHHHHHhh
Q 017971          119 PTLKIFMHGIPTEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       119 Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~  148 (363)
                      |++++  +|+.. . |..+.+.|.+-+.+.
T Consensus       116 PqI~I--ng~~~-v-~G~d~~~l~~~l~~~  141 (270)
T 2axo_A          116 PQAIL--NGRDH-V-KGADVRGIYDRLDAF  141 (270)
T ss_dssp             SEEEE--TTTEE-E-ETTCHHHHHHHHHHH
T ss_pred             CEEEE--CCEEe-e-cCCCHHHHHHHHHHh
Confidence            99776  55521 1 223466777766543

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=93.95  E-value=0.34  Score=37.13  Aligned_cols=68  Identities=6%  Similarity=0.136  Sum_probs=49.9

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---CcEEEEEeccC------------------------chhHHhhcC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGIKQ------------------------FADFADTFE  321 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~---~~~f~~vd~~~------------------------~~~~~~~~g  321 (363)
                      .++++++.|+. ............|++++++++   ++.++.|+.+.                        ...+.+.||
T Consensus        27 ~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  105 (146)
T 1o8x_A           27 AGKLVFFYFSA-SWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN  105 (146)
T ss_dssp             TTCEEEEEEEC-TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT
T ss_pred             CCCEEEEEEEc-cCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhC
Confidence            34667666664 466677788888888888876   47777777654                        235778888


Q ss_pred             CCCCCCCCeEEEEe-CCCCe
Q 017971          322 ANKKSKLPKMVVWD-GNENY  340 (363)
Q Consensus       322 i~~~~~~P~~vi~~-~~~~y  340 (363)
                      +   ...|++++++ ++|+.
T Consensus       106 v---~~~Pt~~lid~~~G~i  122 (146)
T 1o8x_A          106 V---ESIPTLIGVDADSGDV  122 (146)
T ss_dssp             C---CSSSEEEEEETTTCCE
T ss_pred             C---CCCCEEEEEECCCCeE
Confidence            8   5789999999 78763

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=93.88  E-value=0.36  Score=36.88  Aligned_cols=68  Identities=10%  Similarity=0.159  Sum_probs=50.1

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---CcEEEEEeccC------------------------chhHHhhcC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGIKQ------------------------FADFADTFE  321 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~---~~~f~~vd~~~------------------------~~~~~~~~g  321 (363)
                      .++++++.|+. .-..........|.+++++++   ++.++.|+.+.                        ...+.+.||
T Consensus        27 ~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  105 (144)
T 1i5g_A           27 AGKTVFFYFSA-SWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD  105 (144)
T ss_dssp             TTSEEEEEEEC-TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             CCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcC
Confidence            34677766664 466677788888888888876   47777777654                        245778888


Q ss_pred             CCCCCCCCeEEEEe-CCCCe
Q 017971          322 ANKKSKLPKMVVWD-GNENY  340 (363)
Q Consensus       322 i~~~~~~P~~vi~~-~~~~y  340 (363)
                      +   ...|++++++ ++|+.
T Consensus       106 v---~~~P~~~lid~~~G~i  122 (144)
T 1i5g_A          106 V---KSIPTLVGVEADSGNI  122 (144)
T ss_dssp             C---CSSSEEEEEETTTCCE
T ss_pred             C---CCCCEEEEEECCCCcE
Confidence            8   5789999999 78864

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=93.87  E-value=0.31  Score=39.29  Aligned_cols=87  Identities=14%  Similarity=0.150  Sum_probs=57.7

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEecc-----------------------------CchhHHhh
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK-----------------------------QFADFADT  319 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~-----------------------------~~~~~~~~  319 (363)
                      ++++++.|+. ............|+++++++++ +.++.|+.+                             ....+.+.
T Consensus        33 gk~vlv~F~a-~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           33 EPLLAVVFMC-NHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             SSEEEEEEEC-SSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCEEEEEEEC-CCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            3566666653 3455555666777777777776 777777652                             22346677


Q ss_pred             cCCCCCCCCCeEEEEeCCCCeeEEEEEE----------eehhhhhHhhhhhc
Q 017971          320 FEANKKSKLPKMVVWDGNENYLTVSINV----------LKTRVCFFMLTLLQ  361 (363)
Q Consensus       320 ~gi~~~~~~P~~vi~~~~~~y~~~~~~~----------~~~~~~~~~~~~~~  361 (363)
                      ||+   ...|++++++++|+.... +.+          ..+++...+..+|+
T Consensus       112 ~~v---~~~P~~~lid~~G~i~~~-g~~~~~~~~~g~~~~~~l~~~i~~ll~  159 (188)
T 2cvb_A          112 YRA---LRTPEVFLFDERRLLRYH-GRVNDNPKDPSKVQSHDLEAAIEALLR  159 (188)
T ss_dssp             TTC---CEESEEEEECTTCBEEEE-ECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred             cCC---CCCCeEEEECCCCcEEEE-EecCCccccccccCHHHHHHHHHHHHc
Confidence            777   567999999999975444 332          46778887777764

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=93.79  E-value=0.36  Score=36.80  Aligned_cols=68  Identities=7%  Similarity=0.180  Sum_probs=49.5

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---CcEEEEEeccC------------------------chhHHhhcC
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGIKQ------------------------FADFADTFE  321 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~---~~~f~~vd~~~------------------------~~~~~~~~g  321 (363)
                      .++++++.|+. ............|.+++++++   ++.++.++.+.                        ...+.+.||
T Consensus        27 ~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (144)
T 1o73_A           27 VGKTVFLYFSA-SWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             TTCEEEEEEEC-TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEEEEC-cCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcC
Confidence            34667666664 466667788888888888776   47777776654                        235777888


Q ss_pred             CCCCCCCCeEEEEe-CCCCe
Q 017971          322 ANKKSKLPKMVVWD-GNENY  340 (363)
Q Consensus       322 i~~~~~~P~~vi~~-~~~~y  340 (363)
                      +   ...|++++++ ++|+.
T Consensus       106 v---~~~Pt~~lid~~~G~i  122 (144)
T 1o73_A          106 V---ESIPTLITINADTGAI  122 (144)
T ss_dssp             C---CSSSEEEEEETTTCCE
T ss_pred             C---CCCCEEEEEECCCCeE
Confidence            8   5789999999 78764

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=93.79  E-value=0.39  Score=37.95  Aligned_cols=68  Identities=3%  Similarity=0.120  Sum_probs=50.3

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---CcEEEEEeccCc------------------------hhHHhhcCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGIKQF------------------------ADFADTFEA  322 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~---~~~f~~vd~~~~------------------------~~~~~~~gi  322 (363)
                      ++++++.|+ ..-..........|.+++++++   ++.++.|+.+..                        ..+.+.||+
T Consensus        48 gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           48 GKTVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCEEEEEEE-CCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            467776666 4456677888888888888765   377777765543                        567888888


Q ss_pred             CCCCCCCeEEEEeCC-CCee
Q 017971          323 NKKSKLPKMVVWDGN-ENYL  341 (363)
Q Consensus       323 ~~~~~~P~~vi~~~~-~~y~  341 (363)
                         ...|++++++++ |+.-
T Consensus       127 ---~~~Pt~~lid~~~G~iv  143 (165)
T 3s9f_A          127 ---ESIPTLIGLNADTGDTV  143 (165)
T ss_dssp             ---CSSSEEEEEETTTCCEE
T ss_pred             ---CCCCEEEEEeCCCCEEE
Confidence               678999999997 8643

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=93.78  E-value=0.36  Score=38.60  Aligned_cols=86  Identities=10%  Similarity=-0.032  Sum_probs=55.5

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEecc-----------------------CchhHHhhcCCCCCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK-----------------------QFADFADTFEANKKS  326 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~-----------------------~~~~~~~~~gi~~~~  326 (363)
                      ++++++.|+. ............|++++++  ++.++.|+.+                       ....+.+.||+   .
T Consensus        58 gk~vll~F~a-~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v---~  131 (176)
T 3kh7_A           58 GKPALVNVWG-TWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGV---Y  131 (176)
T ss_dssp             SSCEEEEEEC-TTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTC---C
T ss_pred             CCEEEEEEEC-CcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCC---C
Confidence            4566666663 3555566666777776665  5555555521                       12346667777   5


Q ss_pred             CCCeEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          327 KLPKMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       327 ~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ..|+.++++++|+. +...+....+.+...+..+|+
T Consensus       132 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  167 (176)
T 3kh7_A          132 GAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQ  167 (176)
T ss_dssp             SSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             CCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            68999999999863 455566677777777777664

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=93.08  E-value=0.13  Score=38.51  Aligned_cols=70  Identities=13%  Similarity=0.163  Sum_probs=44.1

Q ss_pred             hhhHHHhHcCCCeEEEEE---ECCCChhhhhHHHHHHHHHHHhhcCCCCe-EEEEEeCccchhhhhh----CCcCcCCEE
Q 017971           50 ESNFDSAISSFDYILVDF---YAPWCGHCKRLAPQLDEAAPILAKLKEPI-VIAKVDADKYSRLASK----QEIDAFPTL  121 (363)
Q Consensus        50 ~~~f~~~l~~~~~~lv~f---y~~~C~~C~~~~~~~~~~a~~~~~~~~~v-~~~~vd~~~~~~l~~~----~~i~~~Pt~  121 (363)
                      .+..++.+++++.++-.=   ..|.|++|++....+.+.       +  + .+..+|...++++.+.    -+-+.+|.+
T Consensus        10 ~e~i~~~i~~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~-------g--v~~~~~~~v~~~~~~r~~l~~~sg~~TvPqI   80 (118)
T 2wul_A           10 AEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLH-------G--VRDYAAYNVLDDPELRQGIKDYSNWPTIPQV   80 (118)
T ss_dssp             HHHHHHHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHT-------T--CCSCEEEETTSCHHHHHHHHHHHTCCSSCEE
T ss_pred             HHHHHHHHhcCCEEEEEcCCCCCCCCHHHHHHHHHHHHh-------C--CcCeEeecccCCHHHHHHHHHhccCCCCCeE
Confidence            456778887765433221   136899998887666432       1  3 3667788877665443    366788987


Q ss_pred             EEEeCCEEE
Q 017971          122 KIFMHGIPT  130 (363)
Q Consensus       122 ~~~~~g~~~  130 (363)
                      +  .+|+.+
T Consensus        81 F--I~g~~I   87 (118)
T 2wul_A           81 Y--LNGEFV   87 (118)
T ss_dssp             E--ETTEEE
T ss_pred             e--ECCEEE
Confidence            5  466554

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=93.07  E-value=0.15  Score=41.46  Aligned_cols=41  Identities=10%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             CCeEEEEEECCCChhhhhHHHHH-HHHHHHhhcCCCCeEEEEEeC
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQL-DEAAPILAKLKEPIVIAKVDA  103 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~-~~~a~~~~~~~~~v~~~~vd~  103 (363)
                      .++.+|.|++.+|++|..+.+.+ .++.+.+..   .+.+..+..
T Consensus        17 ~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~---~v~~~~~~l   58 (195)
T 3c7m_A           17 ADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKD---IVAFTPFHL   58 (195)
T ss_dssp             CTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTT---TCEEEEEEC
T ss_pred             CCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCC---ceEEEEEec
Confidence            45788999999999999999999 888876543   366655554

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=92.71  E-value=0.38  Score=37.34  Aligned_cols=67  Identities=7%  Similarity=0.173  Sum_probs=48.3

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchh-----------------------HHhhcCCCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFAD-----------------------FADTFEANK  324 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~-----------------------~~~~~gi~~  324 (363)
                      ++++++.|+.. ...........|+++++++++  +.++.|+.+....                       +.+.||+  
T Consensus        35 gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v--  111 (152)
T 2lrt_A           35 GKVVLIDFTVY-NNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNV--  111 (152)
T ss_dssp             GSEEEEEEECT-TCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTC--
T ss_pred             CCEEEEEEEcC-CChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCc--
Confidence            46777777753 566667777778888777654  7888887765332                       6677888  


Q ss_pred             CCCCCeEEEEeCCCCe
Q 017971          325 KSKLPKMVVWDGNENY  340 (363)
Q Consensus       325 ~~~~P~~vi~~~~~~y  340 (363)
                       ...|++++++++|+.
T Consensus       112 -~~~P~~~lid~~G~i  126 (152)
T 2lrt_A          112 -TNLPSVFLVNRNNEL  126 (152)
T ss_dssp             -CSCSEEEEEETTTEE
T ss_pred             -ccCceEEEECCCCeE
Confidence             568999999999863

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=92.23  E-value=0.59  Score=38.85  Aligned_cols=85  Identities=12%  Similarity=0.138  Sum_probs=55.0

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEecc-----------------------------CchhHHhhcC
Q 017971          273 IVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK-----------------------------QFADFADTFE  321 (363)
Q Consensus       273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~-----------------------------~~~~~~~~~g  321 (363)
                      +++.|+. ............|+++++++++  +.++.|+.+                             ....+.+.||
T Consensus        62 vll~F~a-~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~  140 (218)
T 3u5r_E           62 LLVAFIS-NRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYG  140 (218)
T ss_dssp             EEEEECC-SSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHT
T ss_pred             EEEEEEC-CCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcC
Confidence            4444443 4455556666777777776654  677766662                             2345777888


Q ss_pred             CCCCCCCCeEEEEeCCCCeeEE----------EEEEeehhhhhHhhhhhc
Q 017971          322 ANKKSKLPKMVVWDGNENYLTV----------SINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       322 i~~~~~~P~~vi~~~~~~y~~~----------~~~~~~~~~~~~~~~~~~  361 (363)
                      +   ...|.++++|++|+.-..          .+....+.++..+..+|.
T Consensus       141 v---~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~  187 (218)
T 3u5r_E          141 A---ACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLK  187 (218)
T ss_dssp             C---CEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHT
T ss_pred             C---CCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHc
Confidence            8   567999999999975422          123456778888777764

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=91.99  E-value=0.41  Score=33.50  Aligned_cols=73  Identities=14%  Similarity=0.106  Sum_probs=52.4

Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHh
Q 017971          277 IVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFM  356 (363)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~  356 (363)
                      +|........+.....|.+++..+    |..+|.++.+.+...+|+   . .|++++  .+|+.-.  +....++++.++
T Consensus         5 ~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~---~-vPtl~~--~~G~~v~--g~~~~~~L~~~l   72 (87)
T 1ttz_A            5 LYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGL---R-VPVLRD--PMGRELD--WPFDAPRLRAWL   72 (87)
T ss_dssp             EEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTT---T-CSEEEC--TTCCEEE--SCCCHHHHHHHH
T ss_pred             EEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCC---C-cCeEEE--ECCEEEe--CCCCHHHHHHHH
Confidence            344556777777777777665433    788999988899999998   4 899887  5565432  566778888888


Q ss_pred             hhhhc
Q 017971          357 LTLLQ  361 (363)
Q Consensus       357 ~~~~~  361 (363)
                      ...++
T Consensus        73 ~~~~~   77 (87)
T 1ttz_A           73 DAAPH   77 (87)
T ss_dssp             HTCC-
T ss_pred             HHHHH
Confidence            77654

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=91.95  E-value=0.61  Score=35.37  Aligned_cols=85  Identities=9%  Similarity=0.103  Sum_probs=51.6

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHH---HHHhCC--CcEEEEEeccCchh----H--------------------Hhhc
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKA---AASANR--ELVFCYVGIKQFAD----F--------------------ADTF  320 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~---~a~~~~--~~~f~~vd~~~~~~----~--------------------~~~~  320 (363)
                      ++++++.|+ .............+.+   +.++++  ++.++.++.+..+.    +                    .+.|
T Consensus        27 gk~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           27 AQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CSEEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCEEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            456666665 3345555555555544   555443  37777776653222    2                    2356


Q ss_pred             CCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          321 EANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       321 gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      |+   ...|++++++++|+...  +.+..+.++.++...+
T Consensus       106 ~v---~~~P~~~lid~~G~i~~--~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          106 DI---RATPTIYLLDGRKRVIL--KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CC---CSSSEEEEECTTCBEEE--CSCCHHHHHHHHHC--
T ss_pred             CC---CCCCeEEEECCCCCEEe--cCCCHHHHHHHHHHHc
Confidence            66   57899999999997644  4566777877776543

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=91.92  E-value=0.47  Score=35.48  Aligned_cols=62  Identities=11%  Similarity=0.046  Sum_probs=37.6

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhC--------CcCcCCEEEEEeCCEEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQ--------EIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~--------~i~~~Pt~~~~~~g~~~  130 (363)
                      ++.|+++.|+.|+- ...=.++...|+..+  |.|-.+|.+.+++    +.++.        |....|.|+  .+|..+
T Consensus         2 V~vYtt~~c~~c~~-kk~c~~aK~lL~~kg--V~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIF--i~~~~i   75 (121)
T 1u6t_A            2 IRVYIASSSGSTAI-KKKQQDVLGFLEANK--IGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIF--NESQYR   75 (121)
T ss_dssp             EEEEECTTCSCHHH-HHHHHHHHHHHHHTT--CCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEE--ETTEEE
T ss_pred             EEEEecCCCCCccc-hHHHHHHHHHHHHCC--CceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEE--ECCEEE
Confidence            56788999999931 111122233343333  8899999986644    44455        667788766  455443

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=91.51  E-value=0.56  Score=42.32  Aligned_cols=88  Identities=9%  Similarity=-0.027  Sum_probs=63.9

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccC---------------------------chhHHhhc
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ---------------------------FADFADTF  320 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~---------------------------~~~~~~~~  320 (363)
                      ++++++.|+. ............|+++++++++  +.++.|+.+.                           ...+.+.|
T Consensus        82 GK~vLl~F~a-twC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           82 GKVVLIDFWA-YSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TSEEEEEEEC-TTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCEEEEEEEC-CCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            4677777764 4666777888888888888764  8888876532                           13466777


Q ss_pred             CCCCCCCCCeEEEEeCCCC-eeEEEEEEeehhhhhHhhhhhc
Q 017971          321 EANKKSKLPKMVVWDGNEN-YLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       321 gi~~~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++   ...|++++++++|+ .+...+....+.++.++..+|.
T Consensus       161 gV---~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~  199 (352)
T 2hyx_A          161 RN---RYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLN  199 (352)
T ss_dssp             TC---CEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHH
T ss_pred             CC---CccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHh
Confidence            77   56899999999986 3445566677888888887764

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=91.48  E-value=1.3  Score=33.57  Aligned_cols=81  Identities=15%  Similarity=0.176  Sum_probs=50.2

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHH---HHHhCC--CcEEEEEeccCchh------------------------HHhhc
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKA---AASANR--ELVFCYVGIKQFAD------------------------FADTF  320 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~---~a~~~~--~~~f~~vd~~~~~~------------------------~~~~~  320 (363)
                      ++++++.|+ .............|++   +.++++  ++.++.|+.+....                        +.+.|
T Consensus        31 gk~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           31 AEYTLLFIN-NPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             CSEEEEEEC-CSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CCEEEEEEE-CCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            356666665 4455556666677777   666553  37777776654311                        34556


Q ss_pred             CCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHh
Q 017971          321 EANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFM  356 (363)
Q Consensus       321 gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~  356 (363)
                      ++   ...|++++++++|+.-...  ...+.++.|+
T Consensus       110 ~v---~~~P~~~lid~~G~i~~~~--~~~~~l~~~l  140 (142)
T 3eur_A          110 DL---RAIPTLYLLDKNKTVLLKD--ATLQKVEQYL  140 (142)
T ss_dssp             CC---TTCSEEEEECTTCBEEEEE--ECHHHHHHHH
T ss_pred             CC---CcCCeEEEECCCCcEEecC--CCHHHHHHHH
Confidence            66   5689999999999754332  3456666665

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=90.92  E-value=0.57  Score=34.23  Aligned_cols=75  Identities=8%  Similarity=0.179  Sum_probs=54.6

Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhh
Q 017971          275 LAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCF  354 (363)
Q Consensus       275 i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~  354 (363)
                      +.+|........+.....|.+++.++. +.|..+|.++.+.+...+|+   . .|.++++.. |+.. ..+....++++.
T Consensus        32 vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv---~-VP~l~~~~d-G~~v-~~g~~~~~~L~~  104 (107)
T 2fgx_A           32 LVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYND---R-VPVLFAVNE-DKEL-CHYFLDSDVIGA  104 (107)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTT---S-CSEEEETTT-TEEE-ECSSCCCHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCC---C-CceEEEEEC-CEEE-EecCCCHHHHHH
Confidence            344555678888999999999988875 89999999988889999988   3 899876643 3322 234455666665


Q ss_pred             Hh
Q 017971          355 FM  356 (363)
Q Consensus       355 ~~  356 (363)
                      ++
T Consensus       105 ~L  106 (107)
T 2fgx_A          105 YL  106 (107)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=90.87  E-value=0.2  Score=43.22  Aligned_cols=28  Identities=29%  Similarity=0.476  Sum_probs=24.0

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHH
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAP   87 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~   87 (363)
                      ++..++.|+.|.|++|+++.+++.+..+
T Consensus       147 gk~~I~vFtDp~CPYCkkl~~~l~~~l~  174 (273)
T 3tdg_A          147 KDKILYIVSDPMCPHCQKELTKLRDHLK  174 (273)
T ss_dssp             TTCEEEEEECTTCHHHHHHHHTHHHHHH
T ss_pred             CCeEEEEEECcCChhHHHHHHHHHHHhh
Confidence            4578999999999999999999986543

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=89.85  E-value=0.47  Score=39.21  Aligned_cols=45  Identities=20%  Similarity=0.141  Sum_probs=36.8

Q ss_pred             cchhhhhhCCcCcCCEEEEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          105 KYSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       105 ~~~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++...++++||.++|+++++.+|+.. .+.|..+.+.+.+.+.+..
T Consensus       164 ~~~~~a~~~gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          164 AGFQRVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             HHHHHHHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHHH
Confidence            34566788999999999999899864 4789999999999887654

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=89.64  E-value=0.99  Score=35.31  Aligned_cols=90  Identities=10%  Similarity=0.081  Sum_probs=55.1

Q ss_pred             hhcCCCcEEEEEEeCCChhhHHHHHHHH---HHHHHhC-CCcEEEEEeccC--chhHHhhcCCCCCCCCCeEEEEeCC-C
Q 017971          266 LKDDKRKIVLAIVEDETEEKSQKLVTTL---KAAASAN-RELVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDGN-E  338 (363)
Q Consensus       266 l~~~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~~~-~~~~f~~vd~~~--~~~~~~~~gi~~~~~~P~~vi~~~~-~  338 (363)
                      ....++++++.|..+ .....+.+.+..   .+++... .++.+..+|.++  ...+++.|++   ...|++++++++ |
T Consensus        38 Ak~~~K~vlvd~~a~-wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v---~~~P~~~fld~~~G  113 (153)
T 2dlx_A           38 GQMQNKWLMINIQNV-QDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKL---GDFPYVSILDPRTG  113 (153)
T ss_dssp             HHHHTCEEEEEEECS-CTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTC---CSSSEEEEECTTTC
T ss_pred             HHHcCCeEEEEEECC-CCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCC---CCCCEEEEEeCCCC
Confidence            345567777777654 455555443222   2233322 247777888764  3568899998   578999999997 6


Q ss_pred             -CeeEEEEEEeehhhhhHhhhhh
Q 017971          339 -NYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       339 -~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                       ......+ +..+++..++..+|
T Consensus       114 ~~l~~~~g-~~~~~fl~~L~~~l  135 (153)
T 2dlx_A          114 QKLVEWHQ-LDVSSFLDQVTGFL  135 (153)
T ss_dssp             CCCEEESS-CCHHHHHHHHHHHH
T ss_pred             cEeeecCC-CCHHHHHHHHHHHH
Confidence             3444444 55566665555554

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=89.34  E-value=0.6  Score=37.72  Aligned_cols=42  Identities=12%  Similarity=0.086  Sum_probs=32.1

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD  102 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd  102 (363)
                      ..+.+++.|....|++|+++.+.+..+.+.+  ..++|.+.-.+
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~--~~g~v~~v~r~   54 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQA--GEDNVTVRIRL   54 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHH--CTTTEEEEEEE
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHh--CCCCEEEEEEE
Confidence            4467899999999999999999998876654  13347776555

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=88.85  E-value=0.76  Score=33.34  Aligned_cols=70  Identities=11%  Similarity=-0.093  Sum_probs=49.0

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEecc------CchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEE
Q 017971          273 IVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK------QFADFADTFEANKKSKLPKMVVWDGNENYLTVSIN  346 (363)
Q Consensus       273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~------~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~  346 (363)
                      .++.|+ ..-....+.+...+.+++.+++     .+|+.      .++.+++.+|+   ...|++++   +|+.  ..|.
T Consensus        15 ~vV~F~-A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~~~~~~~~~~l~~~~~V---~~~PT~~i---~G~~--~~G~   80 (106)
T 3kp8_A           15 GGTMYG-AYWCPHCQDQKELFGAAFDQVP-----YVECSPNGPGTPQAQECTEAGI---TSYPTWII---NGRT--YTGV   80 (106)
T ss_dssp             TCEEEE-CTTCHHHHHHHHHHGGGGGGSC-----EEESCTTCTTSCCCHHHHHTTC---CSSSEEEE---TTEE--EESC
T ss_pred             EEEEEE-CCCCHHHHHHHHHHHHHHHhCC-----EEEEecccccchhHHHHHHcCC---eEeCEEEE---CCEE--ecCC
Confidence            344555 3466777888888888887665     34444      56789999999   78999888   5553  5677


Q ss_pred             EeehhhhhHh
Q 017971          347 VLKTRVCFFM  356 (363)
Q Consensus       347 ~~~~~~~~~~  356 (363)
                      ...+.+..|+
T Consensus        81 ~~~~~l~~~~   90 (106)
T 3kp8_A           81 RSLEALAVAS   90 (106)
T ss_dssp             CCHHHHHHHH
T ss_pred             CCHHHHHHHh
Confidence            7777776664

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=88.69  E-value=2.2  Score=33.11  Aligned_cols=68  Identities=13%  Similarity=0.066  Sum_probs=39.3

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEecc---------------------CchhHHhhcCCC-CCCCC
Q 017971          273 IVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK---------------------QFADFADTFEAN-KKSKL  328 (363)
Q Consensus       273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~---------------------~~~~~~~~~gi~-~~~~~  328 (363)
                      +++.|+..............|+++++++++  +.++.|+.+                     ....+.+.||+. .....
T Consensus        32 vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~  111 (161)
T 3drn_A           32 IVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPA  111 (161)
T ss_dssp             EEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCC
T ss_pred             EEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCccc
Confidence            555554233444445555555555555432  555555443                     234577888881 01238


Q ss_pred             CeEEEEeCCCCe
Q 017971          329 PKMVVWDGNENY  340 (363)
Q Consensus       329 P~~vi~~~~~~y  340 (363)
                      |..++++++|+.
T Consensus       112 P~~~lid~~G~i  123 (161)
T 3drn_A          112 RITFVIDKKGII  123 (161)
T ss_dssp             CEEEEECTTSBE
T ss_pred             ceEEEECCCCEE
Confidence            999999999964

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=88.53  E-value=0.33  Score=43.68  Aligned_cols=71  Identities=7%  Similarity=0.141  Sum_probs=39.6

Q ss_pred             hHHHhHcCCCeEEEEEECCCChhhhhHHH-HHHHHHHHhhcCCCCeEEEEEeC-ccc----hhhhhhCCcCcCCEEEEEe
Q 017971           52 NFDSAISSFDYILVDFYAPWCGHCKRLAP-QLDEAAPILAKLKEPIVIAKVDA-DKY----SRLASKQEIDAFPTLKIFM  125 (363)
Q Consensus        52 ~f~~~l~~~~~~lv~fy~~~C~~C~~~~~-~~~~~a~~~~~~~~~v~~~~vd~-~~~----~~l~~~~~i~~~Pt~~~~~  125 (363)
                      ..+++++.++  ++.|..+||++|++... .+++..-.+    ..+.+..+|- ++.    ..+.+..|.+.+|+++  .
T Consensus       253 ~V~~lI~~~~--VvVYsk~~CPyC~~Ak~~LL~~~gV~y----~eidVlEld~~~~~~e~~~~L~~~tG~~TVPqVF--I  324 (362)
T 2jad_A          253 HVKDLIAENE--IFVASKTYCPYSHAALNTLFEKLKVPR----SKVLVLQLNDMKEGADIQAALYEINGQRTVPNIY--I  324 (362)
T ss_dssp             HHHHHHHTCS--EEEEECTTCHHHHHHHHHHHTTTCCCT----TTEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEEE--E
T ss_pred             HHHHHhccCC--EEEEEcCCCcchHHHHHHHHHHcCCCc----ceEEEEEeccccCCHHHHHHHHHHHCCCCcCEEE--E
Confidence            3444555543  56689999999988755 333321111    1233333322 222    3344567889999975  4


Q ss_pred             CCEEE
Q 017971          126 HGIPT  130 (363)
Q Consensus       126 ~g~~~  130 (363)
                      +|+.+
T Consensus       325 ~Gk~I  329 (362)
T 2jad_A          325 NGKHI  329 (362)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            77654

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=88.52  E-value=2  Score=32.49  Aligned_cols=69  Identities=10%  Similarity=0.163  Sum_probs=46.9

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCc--------------------------hhHHhhcC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQF--------------------------ADFADTFE  321 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~--------------------------~~~~~~~g  321 (363)
                      ++++++.|+.. ...........|.++.+++++  +.++.|+.+..                          ..+.+.||
T Consensus        32 gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           32 GRYTLLNFWAA-YDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             CCEEEEEEECT-TCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCEEEEEEEcC-cCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            45666666644 555577777888888888764  77777765421                          13455666


Q ss_pred             CCCCCCCCeEEEEeCCCCeeE
Q 017971          322 ANKKSKLPKMVVWDGNENYLT  342 (363)
Q Consensus       322 i~~~~~~P~~vi~~~~~~y~~  342 (363)
                      +   ...|+.++++++|+...
T Consensus       111 v---~~~P~~~lid~~G~i~~  128 (143)
T 4fo5_A          111 L---RKGFKNFLINDEGVIIA  128 (143)
T ss_dssp             G---GGCCCEEEECTTSBEEE
T ss_pred             C---CCCCcEEEECCCCEEEE
Confidence            6   46799999999987543

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=88.27  E-value=2.1  Score=31.78  Aligned_cols=35  Identities=17%  Similarity=0.101  Sum_probs=25.2

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS  107 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~  107 (363)
                      ++.|+.|+|+.|++....+++.     +    +.+-.+|..+++
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~~-----g----i~y~~~di~~~~   41 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLEDH-----G----IDYTFHDYKKEG   41 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----T----CCEEEEEHHHHC
T ss_pred             EEEEECCCChHHHHHHHHHHHc-----C----CcEEEEeeeCCC
Confidence            6678899999999887777652     2    556667775543

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=88.17  E-value=2.6  Score=35.57  Aligned_cols=88  Identities=8%  Similarity=0.046  Sum_probs=61.2

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEecc--------------------------------------
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK--------------------------------------  311 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~--------------------------------------  311 (363)
                      +.+..++.|.+-...-.+++...++++.+. .++.+.++...                                      
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~  174 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  174 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcc
Confidence            345666666677888888888888877665 34666654321                                      


Q ss_pred             ------------CchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          312 ------------QFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       312 ------------~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                                  ...++.+.+|+   ...|++++.+++|++....|-...+.+...+...+|
T Consensus       175 ~~~~~~~~~~v~~~~~l~~~~gv---~gtPt~vi~~~~G~~~~~~G~~~~~~L~~~l~~~~~  233 (241)
T 1v58_A          175 ANVSTEQMKVLSDNEKLMDDLGA---NVTPAIYYMSKENTLQQAVGLPDQKTLNIIMGNKLQ  233 (241)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTC---CSSCEEEEEETTTEEEEEESSCCHHHHHHHTTC---
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCC---CCCCEEEEECCCCCEEEecCCCCHHHHHHHHHHHHH
Confidence                        12335677888   678999999988887777787778888888877776

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=88.08  E-value=0.71  Score=44.86  Aligned_cols=67  Identities=28%  Similarity=0.433  Sum_probs=44.8

Q ss_pred             hhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc---hh----hhhhCCcCcCCEEEE
Q 017971           51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---SR----LASKQEIDAFPTLKI  123 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~~----l~~~~~i~~~Pt~~~  123 (363)
                      +.+++.++.++  ++.|..+||++|++....+.+..         +.+-.+|.+..   ++    +.+..+...+|.+  
T Consensus         9 ~~v~~~i~~~~--v~vy~~~~Cp~C~~~k~~L~~~~---------i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v--   75 (598)
T 2x8g_A            9 QWLRKTVDSAA--VILFSKTTCPYCKKVKDVLAEAK---------IKHATIELDQLSNGSAIQKCLASFSKIETVPQM--   75 (598)
T ss_dssp             HHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHTT---------CCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEE--
T ss_pred             HHHHHHhccCC--EEEEECCCChhHHHHHHHHHHCC---------CCcEEEEcccCcchHHHHHHHHHHhCCceeCEE--
Confidence            56777776543  66799999999998887777531         44555666543   22    3334678899988  


Q ss_pred             EeCCEEE
Q 017971          124 FMHGIPT  130 (363)
Q Consensus       124 ~~~g~~~  130 (363)
                      |-+|+.+
T Consensus        76 ~i~g~~i   82 (598)
T 2x8g_A           76 FVRGKFI   82 (598)
T ss_dssp             EETTEEE
T ss_pred             EECCEEE
Confidence            4567654

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=87.98  E-value=1.2  Score=30.21  Aligned_cols=57  Identities=12%  Similarity=0.194  Sum_probs=41.2

Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCc----hhHHhhcCCCCCCCCCeEEE
Q 017971          276 AIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF----ADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       276 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~----~~~~~~~gi~~~~~~P~~vi  333 (363)
                      .+|........+.....|.+++.+++++.|..+|....    +.+.+.+|. .....|++.+
T Consensus         4 ~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~-~~~~vP~i~~   64 (85)
T 1ego_A            4 VIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGK-PVETVPQIFV   64 (85)
T ss_dssp             EEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCC-CSCCSCEEEE
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCC-CCceeCeEEE
Confidence            34445566777888889999888877899999998654    367777882 1267899843

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=87.76  E-value=2.2  Score=33.36  Aligned_cols=34  Identities=0%  Similarity=-0.133  Sum_probs=23.5

Q ss_pred             CCeEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          328 LPKMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       328 ~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      .|++++++++|+. +...+....+++...+..+|+
T Consensus       130 ~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          130 SIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             CCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             cceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            3489999999853 334455666778777777664

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=87.62  E-value=1.2  Score=35.71  Aligned_cols=42  Identities=14%  Similarity=0.153  Sum_probs=30.6

Q ss_pred             CCeEEEEEECCCChhhhhHHHHH-HHHHHHhhcCCCCeEEEEEe
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQL-DEAAPILAKLKEPIVIAKVD  102 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~-~~~a~~~~~~~~~v~~~~vd  102 (363)
                      .+..++.|+.+.|++|..+.+.+ .++.+.+.+ .+++.+...+
T Consensus        11 a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~-~~~v~~~~~~   53 (186)
T 3bci_A           11 GKPLVVVYGDYKCPYCKELDEKVMPKLRKNYID-NHKVEYQFVN   53 (186)
T ss_dssp             CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTSSEEEEEE
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHHHHhcc-CCeEEEEEEe
Confidence            46789999999999999999998 467666532 1236555544

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=87.16  E-value=1.4  Score=36.28  Aligned_cols=44  Identities=16%  Similarity=0.215  Sum_probs=31.7

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHH-HhhcCCCCeEEEEEeC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAP-ILAKLKEPIVIAKVDA  103 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~-~~~~~~~~v~~~~vd~  103 (363)
                      ..+.++|.|....|++|+++.+.....-+ .+-. .++|.+.-.+.
T Consensus        14 ~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~-~g~v~~v~r~~   58 (205)
T 3gmf_A           14 AAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQ-PGKGAIEVRNF   58 (205)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTSEEEEEEEC
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhcc-CCeEEEEEEeC
Confidence            34678999999999999999988765544 5522 33577765554

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=86.35  E-value=1.5  Score=29.58  Aligned_cols=51  Identities=10%  Similarity=0.094  Sum_probs=36.2

Q ss_pred             CCChhhHHHHHHHHHHHHHhCCC-cEEEEEecc-CchhHHhhcCCCCCCCCCeEEE
Q 017971          280 DETEEKSQKLVTTLKAAASANRE-LVFCYVGIK-QFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       280 ~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~-~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      .......+.....+.+++.++.. +.+..+|.+ ...+.++.+|+   ...|++++
T Consensus         9 ~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv---~~vPt~~i   61 (80)
T 2k8s_A            9 HAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGV---KSVPALVI   61 (80)
T ss_dssp             ECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTC---CEEEEEEE
T ss_pred             CCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCC---CcCCEEEE
Confidence            44677778888888887766543 555556553 45678888998   57899887

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=85.61  E-value=2  Score=34.74  Aligned_cols=47  Identities=9%  Similarity=-0.085  Sum_probs=28.8

Q ss_pred             hhHHhhcCCC-C-CCCCCeEEEEeCCCCeeE-EEEEE----eehhhhhHhhhhh
Q 017971          314 ADFADTFEAN-K-KSKLPKMVVWDGNENYLT-VSINV----LKTRVCFFMLTLL  360 (363)
Q Consensus       314 ~~~~~~~gi~-~-~~~~P~~vi~~~~~~y~~-~~~~~----~~~~~~~~~~~~~  360 (363)
                      ..+.+.||+. . ....|++++++++|+.-. ..+..    ..+++...+..++
T Consensus       116 ~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          116 RELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             SHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             hHHHHHhCCcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            3567778872 0 016899999999986333 22332    3466666666554

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=85.05  E-value=2.4  Score=33.08  Aligned_cols=89  Identities=17%  Similarity=0.105  Sum_probs=53.4

Q ss_pred             CCcEEEEEEeCCChhh-HHHHHHHHHHHHHhCC-----CcEEEEEeccCc----------------------------hh
Q 017971          270 KRKIVLAIVEDETEEK-SQKLVTTLKAAASANR-----ELVFCYVGIKQF----------------------------AD  315 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~-~~~~~~~l~~~a~~~~-----~~~f~~vd~~~~----------------------------~~  315 (363)
                      ++++++.|+.. .... .......|+++.++++     ++.++.|+.+..                            ..
T Consensus        35 gk~vll~f~~~-~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           35 DKVVLLFFGFT-RCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TSEEEEEEECT-TCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCEEEEEEECC-CCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            45666666544 4443 6666777788777776     577777765421                            24


Q ss_pred             HHhhcCCCC------------CCCCCeEEEEeCCCCe-eEEEEEE--eehhhhhHhhhhh
Q 017971          316 FADTFEANK------------KSKLPKMVVWDGNENY-LTVSINV--LKTRVCFFMLTLL  360 (363)
Q Consensus       316 ~~~~~gi~~------------~~~~P~~vi~~~~~~y-~~~~~~~--~~~~~~~~~~~~~  360 (363)
                      +.+.||+..            ....|++++++ +|+. +...+..  ..+++...+..+|
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~l~~~l~~ll  172 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADLQALL  172 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHHHHCC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHhC
Confidence            555565410            13569999999 9863 3333444  5566666666554

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=84.28  E-value=0.86  Score=36.66  Aligned_cols=40  Identities=25%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             chhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhc
Q 017971          106 YSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       106 ~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~  149 (363)
                      +..+++++||.++||+++  +|+.  +.|..+.+.+.+.+.+..
T Consensus       138 ~~~~a~~~gv~GtPt~vv--nG~~--~~G~~~~~~l~~~i~~~~  177 (186)
T 3bci_A          138 DKKIAKDNHIKTTPTAFI--NGEK--VEDPYDYESYEKLLKDKI  177 (186)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTEE--CSCTTCHHHHHHHHHC--
T ss_pred             HHHHHHHcCCCCCCeEEE--CCEE--cCCCCCHHHHHHHHHHHH
Confidence            355778899999999987  7764  468888999999887654

>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A

Probab=84.17  E-value=9.5  Score=27.34  Aligned_cols=85  Identities=12%  Similarity=0.194  Sum_probs=65.3

Q ss_pred             EEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHH
Q 017971           63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLV  142 (363)
Q Consensus        63 ~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~  142 (363)
                      ....|.+..-+.+++....+.++-+.... +.++.+-.||..++|++++.++|-.+||++=-...-.-+.-|..-...+.
T Consensus        13 L~lLyvag~tp~S~~ai~nL~~i~e~~l~-~~~y~LeVIDv~eqPeLAE~~~IvATPTLIK~~P~P~rriiGd~i~~ql~   91 (105)
T 1t4y_A           13 LLLQLFVDTRPLSQHIVQRVKNILAAVEA-TVPISLQVINVADQPQLVEYYRLVVTPALVKIGPGSRQVLSGIDLTDQLA   91 (105)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHHHCC-SSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESSSCEEEESSCHHHHHH
T ss_pred             hheeeEeCCCccHHHHHHHHHHHHHHhcc-CCceEEEEeecccCHHHHhHcCeeeccHhhccCCCCceEEeChHHHHHHH
Confidence            33467778888888888888887766542 33599999999999999999999999998855443333467887788888


Q ss_pred             HHHHhh
Q 017971          143 RYLKKF  148 (363)
Q Consensus       143 ~~i~~~  148 (363)
                      .|.-+.
T Consensus        92 ~wwprW   97 (105)
T 1t4y_A           92 NQLPQW   97 (105)
T ss_dssp             HHHHHH
T ss_pred             HHhHHH
Confidence            887554

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=83.55  E-value=4.9  Score=30.91  Aligned_cols=32  Identities=13%  Similarity=0.073  Sum_probs=22.5

Q ss_pred             eEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      .+++++++|+. +...+....+++...+..+|+
T Consensus       129 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          129 IMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             EEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             eEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            89999999853 333455566778877777764

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=83.99  E-value=0.22  Score=37.88  Aligned_cols=24  Identities=8%  Similarity=0.358  Sum_probs=19.0

Q ss_pred             hhHHhhcCCCCCCCCCeEEEEeCCCCe
Q 017971          314 ADFADTFEANKKSKLPKMVVWDGNENY  340 (363)
Q Consensus       314 ~~~~~~~gi~~~~~~P~~vi~~~~~~y  340 (363)
                      ..+.+.||+   ...|++++++++|+.
T Consensus        98 ~~~~~~~~v---~~~P~~~lid~~G~i  121 (143)
T 2lus_A           98 SNVTAKYGI---TGIPALVIVKKDGTL  121 (143)
Confidence            357778888   568999999988853

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=83.44  E-value=2.6  Score=33.71  Aligned_cols=47  Identities=4%  Similarity=-0.137  Sum_probs=28.8

Q ss_pred             hhHHhhcCCC-C--CCCCCeEEEEeCCCCeeE-EEEEE----eehhhhhHhhhhh
Q 017971          314 ADFADTFEAN-K--KSKLPKMVVWDGNENYLT-VSINV----LKTRVCFFMLTLL  360 (363)
Q Consensus       314 ~~~~~~~gi~-~--~~~~P~~vi~~~~~~y~~-~~~~~----~~~~~~~~~~~~~  360 (363)
                      ..+.+.||+. .  ....|+++++|++|+... ..+..    ..+++...+..++
T Consensus       102 ~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          102 QTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             CHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             hHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            4577788882 0  016899999999986433 33332    3556666665543

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=83.42  E-value=1.8  Score=34.91  Aligned_cols=57  Identities=12%  Similarity=0.164  Sum_probs=36.3

Q ss_pred             CCCeEEEEEEC-CCChhhh-hHHHHHHHHHHHh-hcCCCCeEEEEEeCcc---chhhhhhCCcC
Q 017971           59 SFDYILVDFYA-PWCGHCK-RLAPQLDEAAPIL-AKLKEPIVIAKVDADK---YSRLASKQEID  116 (363)
Q Consensus        59 ~~~~~lv~fy~-~~C~~C~-~~~~~~~~~a~~~-~~~~~~v~~~~vd~~~---~~~l~~~~~i~  116 (363)
                      .++.+++.||. .||+.|. ...+.|.+...++ +..+-. .+.-|-++.   ....|++.++.
T Consensus        42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~-~V~gvS~D~~~~~~~~~~~~~~~  104 (182)
T 1xiy_A           42 NNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD-DIYCITNNDIYVLKSWFKSMDIK  104 (182)
T ss_dssp             TTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS-EEEEEESSCHHHHHHHHHHTTCC
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeCCCHHHHHHHHHHcCCC
Confidence            34666676664 5999999 8899999998888 665422 244444433   23445555543

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=83.42  E-value=4.4  Score=31.84  Aligned_cols=41  Identities=7%  Similarity=0.126  Sum_probs=30.6

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEe
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVG  309 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd  309 (363)
                      ...+..++.|.+-...-...+...+.++.++++++.+.+.+
T Consensus        20 ~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~   60 (175)
T 3gyk_A           20 PEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYRE   60 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            33455566666778888889999999998888777777665

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=82.53  E-value=7.5  Score=30.08  Aligned_cols=90  Identities=8%  Similarity=0.094  Sum_probs=52.0

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccC-----------------------chhHHhhcCCCCCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ-----------------------FADFADTFEANKKS  326 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~-----------------------~~~~~~~~gi~~~~  326 (363)
                      ++++++.|+..............|++++++++++.++.|+.+.                       ...+.+.||+. ..
T Consensus        44 gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~-~~  122 (167)
T 2jsy_A           44 GKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVY-IK  122 (167)
T ss_dssp             TSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCB-BT
T ss_pred             CCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCc-cc
Confidence            4567766665432555556666777777666556666665432                       12355566662 11


Q ss_pred             --C--CCeEEEEeCCCCeeEEE-E-----EEeehhhhhHhhhhh
Q 017971          327 --K--LPKMVVWDGNENYLTVS-I-----NVLKTRVCFFMLTLL  360 (363)
Q Consensus       327 --~--~P~~vi~~~~~~y~~~~-~-----~~~~~~~~~~~~~~~  360 (363)
                        +  .|..++++++|+..... +     +..-+++...+.++|
T Consensus       123 ~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          123 ELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             TTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             cCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence              1  49999999998633322 1     112356777777665

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=83.08  E-value=0.26  Score=38.44  Aligned_cols=45  Identities=7%  Similarity=0.134  Sum_probs=27.0

Q ss_pred             hHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          315 DFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       315 ~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      .+.+.||+ .....|++++++++|+......-.....+..++..+.
T Consensus       103 ~~~~~~~~-~~~~~P~~~lid~~G~i~~~~~g~~~~~l~~~l~~l~  147 (159)
T 2ls5_A          103 DIFAKYAL-RDAGITRNVLIDREGKIVKLTRLYNEEEFASLVQQIN  147 (159)
Confidence            46667775 2356899999999985332222234455666555543

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=82.28  E-value=0.97  Score=33.52  Aligned_cols=43  Identities=14%  Similarity=0.104  Sum_probs=36.0

Q ss_pred             hhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh
Q 017971          207 EDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN  250 (363)
Q Consensus       207 ~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~  250 (363)
                      .+++..+++.+.|++++|++ .++.....|....+.+..|+++.
T Consensus        66 ~~la~~~~V~g~PT~i~f~~-G~ev~Ri~G~~~~~~f~~~L~~~  108 (116)
T 3dml_A           66 PGLELARPVTFTPTFVLMAG-DVESGRLEGYPGEDFFWPMLARL  108 (116)
T ss_dssp             TTCBCSSCCCSSSEEEEEET-TEEEEEEECCCCHHHHHHHHHHH
T ss_pred             hhHHHHCCCCCCCEEEEEEC-CEEEeeecCCCCHHHHHHHHHHH
Confidence            46788899999999999984 45556788999999999999874

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=82.24  E-value=12  Score=28.79  Aligned_cols=77  Identities=21%  Similarity=0.257  Sum_probs=43.5

Q ss_pred             cEEEeecCCh-hHHHHHHHHhhhhh--------HHHHh-hh-cchhhhhhcCCCCCCeEEEEcCCCCCcccccCC-----
Q 017971          174 PLFIGFGLDE-SVMSNLALKYKKKA--------WFAVA-KD-FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-----  237 (363)
Q Consensus       174 ~~~v~~~~~~-~~~~~~a~~~~~~~--------~~~~~-~~-~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~-----  237 (363)
                      +++|.|+.++ ..++.+...+....        .|..+ .+ ...+....+++.+.|+++++.+++.......|.     
T Consensus        46 pVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~G~~~~~~  125 (151)
T 3ph9_A           46 PLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRL  125 (151)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCTTCCCSCTTST
T ss_pred             cEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEEEEeCCcCCcc
Confidence            6888887653 44555544333211        11111 11 123457789999999999998655555555565     


Q ss_pred             --C---CHHHHHHHHHhh
Q 017971          238 --F---DEEFLEEFIKQN  250 (363)
Q Consensus       238 --~---~~~~l~~fi~~~  250 (363)
                        .   +.+.+.+.+++.
T Consensus       126 ~~~~~~~~~~ll~~~~~a  143 (151)
T 3ph9_A          126 YTYEPRDLPLLIENMKKA  143 (151)
T ss_dssp             TCCCGGGHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHH
Confidence              3   345555555543

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=81.63  E-value=3.1  Score=32.01  Aligned_cols=69  Identities=7%  Similarity=0.058  Sum_probs=40.3

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccC-----------------------chhHHhhcCCC-CC
Q 017971          272 KIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ-----------------------FADFADTFEAN-KK  325 (363)
Q Consensus       272 ~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~-----------------------~~~~~~~~gi~-~~  325 (363)
                      ++++.|+..............|.++++++++  +.++.|+.+.                       ...+.+.||+. ..
T Consensus        38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~  117 (160)
T 1xvw_A           38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQ  117 (160)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETT
T ss_pred             CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcccc
Confidence            5555554233444455556666666666542  5555554432                       34577788882 11


Q ss_pred             CCCC--eEEEEeCCCCe
Q 017971          326 SKLP--KMVVWDGNENY  340 (363)
Q Consensus       326 ~~~P--~~vi~~~~~~y  340 (363)
                      ...|  +.++++++|+.
T Consensus       118 ~~~p~~~~~lid~~G~i  134 (160)
T 1xvw_A          118 AGIANRGTFVVDRSGII  134 (160)
T ss_dssp             TTEECSEEEEECTTSBE
T ss_pred             CCCeeeeEEEECCCCeE
Confidence            1567  89999999863

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=81.46  E-value=1.6  Score=35.74  Aligned_cols=43  Identities=12%  Similarity=0.196  Sum_probs=33.8

Q ss_pred             hhhhhhCCcCcCCEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          107 SRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       107 ~~l~~~~~i~~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      ...++++||.|+|++++..+|+.+. ..|..+.+.+.+.+++.+
T Consensus       159 ~~~a~~~gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~  202 (208)
T 3kzq_A          159 LSLAKSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERI  202 (208)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            4567789999999999988887654 568788888888777654

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=81.31  E-value=9.2  Score=29.47  Aligned_cols=93  Identities=10%  Similarity=0.060  Sum_probs=58.7

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccC-----------chhHHh-hcCCC------------
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ-----------FADFAD-TFEAN------------  323 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~-----------~~~~~~-~~gi~------------  323 (363)
                      ++++++.|+.. ...........|+++++++++  +.++.|+.+.           ..++++ .++++            
T Consensus        32 gk~vll~f~a~-~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           32 GKVLLIVNVAS-KCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TSEEEEEEECS-SSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCEEEEEEEec-cCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            46677666653 455566667777777777654  7777776531           233455 44321            


Q ss_pred             ----------------CCCCCC---eEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhcCC
Q 017971          324 ----------------KKSKLP---KMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQFS  363 (363)
Q Consensus       324 ----------------~~~~~P---~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~~~  363 (363)
                                      .....|   +.++++++|+. +...+....+.++..+..+|.-|
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~s  170 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEIS  170 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTTCC
T ss_pred             chHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhhcC
Confidence                            003457   89999999863 44456666778888888888643

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=81.12  E-value=5.1  Score=31.29  Aligned_cols=92  Identities=11%  Similarity=0.047  Sum_probs=52.9

Q ss_pred             CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEecc-----------CchhHH-hhcCCC-----------
Q 017971          269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK-----------QFADFA-DTFEAN-----------  323 (363)
Q Consensus       269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~-----------~~~~~~-~~~gi~-----------  323 (363)
                      .++++++.|+.. ...... ....|+++.+++++  +.++.|+.+           ...+++ +.++++           
T Consensus        31 ~Gk~vll~F~a~-wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~  108 (171)
T 3cmi_A           31 KGKVVLIVNVAS-KCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNG  108 (171)
T ss_dssp             TTCEEEEEEEES-SSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEec-CCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCC
Confidence            356777777654 334455 56677777776654  777777542           123344 322211           


Q ss_pred             ---------------CCCCCC------eEEEEeCCCCe-eEEEEEEeehhhhhHhhhhhcC
Q 017971          324 ---------------KKSKLP------KMVVWDGNENY-LTVSINVLKTRVCFFMLTLLQF  362 (363)
Q Consensus       324 ---------------~~~~~P------~~vi~~~~~~y-~~~~~~~~~~~~~~~~~~~~~~  362 (363)
                                     .....|      +.++++++|+. +...+....+.+...+..+|.-
T Consensus       109 ~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  169 (171)
T 3cmi_A          109 GNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLKE  169 (171)
T ss_dssp             TTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHTC
T ss_pred             ccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHHh
Confidence                           013468      89999999863 3444566778888888888763

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=80.22  E-value=4.5  Score=32.79  Aligned_cols=46  Identities=4%  Similarity=0.082  Sum_probs=26.9

Q ss_pred             hHHhhcCCC-CC--CCCCeEEEEeCCCCeeEEE-EEEe----ehhhhhHhhhhh
Q 017971          315 DFADTFEAN-KK--SKLPKMVVWDGNENYLTVS-INVL----KTRVCFFMLTLL  360 (363)
Q Consensus       315 ~~~~~~gi~-~~--~~~P~~vi~~~~~~y~~~~-~~~~----~~~~~~~~~~~~  360 (363)
                      .+.+.||+. ..  ...|++++++++|+..... +...    .+++...+..++
T Consensus       111 ~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          111 CIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            466777772 00  1689999999998643332 2222    255655555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	363
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	2e-25
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	5e-22
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	1e-21
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	5e-19
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	1e-15
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	3e-15
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	3e-15
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	3e-15
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	3e-15
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	4e-14
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	7e-14
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	7e-13
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	9e-12
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	1e-11
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	2e-11
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	3e-10
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	4e-10
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	4e-10
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	7e-10
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	9e-10
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	3e-09
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	9e-09
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	1e-08
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	1e-08
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	1e-08
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	1e-07
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	6e-07
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	6e-07
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	9e-07
d1bjxa_	110	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	1e-06
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	1e-06
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	2e-06
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	3e-06
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	5e-06
d2djka1	133	c.47.1.2 (A:1-133) Protein disulfide isomerase, PD	8e-04
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	0.004
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	0.004

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 97.1 bits (241), Expect = 2e-25
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 13/114 (11%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
            ++LDE +F+  +  F Y +V F        K         +    K  + ++IA V   
Sbjct: 4   CVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVK 61

Query: 105 KYSR-------LASKQEIDAFPTLKIFMHG----IPTEYYGPRKAELLVRYLKK 147
            Y            K +   FP++ +F       +    +     + L  ++  
Sbjct: 62  DYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSA 115

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.8 bits (217), Expect = 5e-22
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 11/112 (9%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK----LKEPIVIAK 100
            + LD   F   I    ++LV F   +    K    +    A   A     L   + I+ 
Sbjct: 6   ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISD 63

Query: 101 VDADKYSRLASK--QEIDAFPTLKIFMHGI---PTEYYGPRKAELLVRYLKK 147
                   L+ K   + +++P   +F  G    P  Y G  K   + R+LK 
Sbjct: 64  YGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKG 115

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 86.8 bits (214), Expect = 1e-21
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE-----PI 96
             +VI ++  N+ +    ++ + + ++ P          Q +    IL    +      +
Sbjct: 10  VDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKA-SQRQFEMEELILELAAQVLEDKGV 68

Query: 97  VIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAP 151
               VD++K + +A K  +    ++ +F      EY G   A+ LV +L   +  
Sbjct: 69  GFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVLED 123

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (196), Expect = 5e-19
 Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 3/113 (2%)

Query: 42  DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           +  V+ L +SNF  A+++  Y+LV+FYAPWCGHCK LAP+  +AA  L      I +AKV
Sbjct: 6   EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAP 151
           DA + S LA +  +  +PT+K F +G    P EY   R+A+ +V +LKK   P
Sbjct: 66  DATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP 118

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 69.8 bits (170), Expect = 1e-15
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 44  KVIELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
           K+I L + +FD+  + +   ILVDF+A WCG CK +AP LDE A    + +  + +AK++
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA---DEYQGKLTVAKLN 59

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKKFVA 150
            D+    A K  I   PTL +F +G +     G      L  +L   +A
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 69.7 bits (170), Expect = 3e-15
 Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 5/111 (4%)

Query: 47  ELDESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
            + ES  D  ++      +L+                + E           +     D +
Sbjct: 21  PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA--IADLE 78

Query: 105 KYSRLASKQEIDAFPTLKIF-MHGIPTEYYGPRKAELLVRYLKKFVAPDVS 154
           +   +  +  +  FP   +F          G      L+  ++  V P   
Sbjct: 79  QSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 69.2 bits (169), Expect = 3e-15
 Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 5/106 (4%)

Query: 47  ELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
            ++ S  D  I       IL+                + E      +      +A  D +
Sbjct: 15  PVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVAVADLE 72

Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFV 149
           +   +  +  +  FP   +F  G       G      L+  ++  V
Sbjct: 73  QSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIV 118

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 68.7 bits (167), Expect = 3e-15
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
            + L ++NF  AI     +LVDF+A WCG C+ +AP L+E A       + + +AK++ D
Sbjct: 2   TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEA---HADKVTVAKLNVD 58

Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFV 149
           +     S+  I + PTL +F  G P +   G +  E L   L   +
Sbjct: 59  ENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVL 104

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.2 bits (168), Expect = 3e-15
 Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 5/121 (4%)

Query: 34  EEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK 93
           ++E     D  V++L   +F+  I S D +L +F+APWCGHCK +AP+  +AA  L   +
Sbjct: 1   QQEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLV--E 58

Query: 94  EPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVA 150
           + I +A++D  +   L  +  I  FP+LKIF +       +Y GPR AE +V+++ K   
Sbjct: 59  KNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ 118

Query: 151 P 151
           P
Sbjct: 119 P 119

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 66.0 bits (160), Expect = 4e-14
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 42  DGKVIELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
           +G V  +   N++   +     +L++FYAPWCGHCK LAP+ +E   + AK  E      
Sbjct: 1   EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAK-SEFKDRVV 59

Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKK 147
           +     +      EI  FPT+K++  G    P  Y G R  E L++++ +
Sbjct: 60  IAKVDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 109

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (160), Expect = 7e-14
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 7/136 (5%)

Query: 31  LSSEEETKFKIDGKVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPIL 89
           + S+E  +   D  V +L   N D  ++     +LV +YAPWCGHCKRLAP   E A   
Sbjct: 1   VKSQEIFE-NQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTY 59

Query: 90  AKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE---YYGPRKAELLVRYLK 146
           A     ++IAK+D  +         I+ +PT+ ++  G  +E   Y G R  + L  ++K
Sbjct: 60  ANATSDVLIAKLDHTENDV--RGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIK 117

Query: 147 KFVAPDVSILNSDAEV 162
           +    DV       E 
Sbjct: 118 ENGHFDVDGKALYEEA 133

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 62.1 bits (150), Expect = 7e-13
 Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 44  KVIELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
            VI + ++ F+S  + +   +LV F+A WCG C+ ++P ++ AA       + + + K++
Sbjct: 3   GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAA---NTYSDRLKVVKLE 59

Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFV 149
            D       K +++  P L++       +   G    + L+ +L   +
Sbjct: 60  IDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL 107

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 59.1 bits (142), Expect = 9e-12
 Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 45  VIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
              +++  F + +  S   +LVDF+APWCG C+ +AP +DE A    + K+ +   K++ 
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAG---EYKDKLKCVKLNT 59

Query: 104 DKYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFV 149
           D+   +AS+  I + PT+ +F  G   E   G      +V+ ++K++
Sbjct: 60  DESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 106

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 58.6 bits (141), Expect = 1e-11
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 43  GKVIELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
           GKV E+++  F   +  +    +++D +  WCG CK +AP+ ++ A       + I +  
Sbjct: 6   GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEE---YLDVIFLKL 62

Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK 147
               +   LA +  I   PT KI             K + L+  ++ 
Sbjct: 63  DCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQA 109

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 58.3 bits (140), Expect = 2e-11
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 42  DGKVIELD-----ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPI 96
           +G+VI        + +F+    S   I+VDF A WC  CK +AP   E A         +
Sbjct: 3   EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN----V 58

Query: 97  VIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK 147
              KVD D+   +A +  ++A PT      G   +       + L   + K
Sbjct: 59  TFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAK 109

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 54.6 bits (130), Expect = 3e-10
 Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 45  VIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
           V ++++S++   +  S   ++VDF+APWCG CK +AP +DE   +  +    I + K++ 
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDE---LAKEYSGKIAVYKLNT 57

Query: 104 DKYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFV 149
           D+   +A++  I + PT+  F +G   E   G      L   ++K++
Sbjct: 58  DEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 104

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 54.4 bits (130), Expect = 4e-10
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 43  GKVIELD-ESNFDS----AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV 97
           G VI +D ++ +D+           I+VDF A WCG CK +AP  +  +         ++
Sbjct: 2   GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSND---YAGKVI 58

Query: 98  IAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVA 150
             KVD D  + +A    I A PT  ++  G+  +       + L   + K  A
Sbjct: 59  FLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 111

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 53.6 bits (128), Expect = 4e-10
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123
           +  F +P C +C      +DEA        + I + K+D       A +  + A P + I
Sbjct: 5   IEVFTSPTCPYCPMAIEVVDEAKKE---FGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61

Query: 124 FMHGIPTEYYGPRKAELLVRYLKK 147
                   + G    E L   +  
Sbjct: 62  NGVV---RFVGAPSREELFEAIND 82

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.7 bits (128), Expect = 7e-10
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 42  DGKVIELD-----ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPI 96
           +G+VI              A  S   ++VDF A WCG C+ +AP   + A         +
Sbjct: 5   EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK----LPNV 60

Query: 97  VIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVA 150
           +  KVD D+   +AS   I A PT      G   +     K + L   + K +A
Sbjct: 61  LFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 53.3 bits (127), Expect = 9e-10
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 44  KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
           K++   ++ FDS IS  + ++VDF+A WCG CKR+AP         +K    +V  KVD 
Sbjct: 3   KIV-TSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPF----YEECSKTYTKMVFIKVDV 57

Query: 104 DKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKF 148
           D+ S +  K+ I + PT K++ +G   +         L + ++K+
Sbjct: 58  DEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKY 102

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 44  KVIELDESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
           K +   + +F   +S       +V F    CG C R+AP     +          V  +V
Sbjct: 4   KPVG-SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNK----YPQAVFLEV 58

Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
           D  +    A+   I A PT + F + +  + Y    A  L   +K+ +
Sbjct: 59  DVHQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQHL 106

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 9e-09
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 49  DESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106
           +    D AI S +   +++ F   W   C ++   L     I  K+K   VI  VD  + 
Sbjct: 9   NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYS---IAEKVKNFAVIYLVDITEV 65

Query: 107 SRLASKQEIDAFPTLKIFMHG--IPTEYYGPRKAELLVRYLKK 147
                  E+    T+  F     I  +       ++      K
Sbjct: 66  PDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDK 108

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 3/107 (2%)

Query: 47  ELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEP-IVIAKVDAD 104
            L +    +  +   D  ++ F  P C +C        + A    K  +  I+   V+A 
Sbjct: 1   NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI 60

Query: 105 KYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKKFVA 150
           +Y   A +  + A P + I ++G    E+ G    ++ +  L   ++
Sbjct: 61  EYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSALS 107

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 49  DESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106
            ++ F  A+ +     ++VDF A WCG CK + P     +         ++  +VD D  
Sbjct: 7   SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY----SNVIFLEVDVDDC 62

Query: 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
             +AS+ E+   PT + F  G     +     E L   + + V
Sbjct: 63  QDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELV 105

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 34  EEETKFKIDGKVIEL-DESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL 89
           ++ +     G V EL     F   I        I+V+ Y      C  L   L+  A   
Sbjct: 90  QKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY 149

Query: 90  AKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
             +K      K+ A   +    +   D  PTL ++  G
Sbjct: 150 PMVK----FCKIRAS-NTGAGDRFSSDVLPTLLVYKGG 182

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 14/114 (12%)

Query: 50  ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
           E     A +S   ++V  +  WCG CK L P+  E+  I ++L    V+  ++ ++  + 
Sbjct: 15  EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEI-SELSHNFVMVNLEDEEEPKD 73

Query: 110 ASKQEIDAFPTLKIFMH-------------GIPTEYYGPRKAELLVRYLKKFVA 150
                   +    +F+              G P+  Y    AE +V+ +K+   
Sbjct: 74  EDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQE 127

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.7 bits (107), Expect = 6e-07
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 43  GKVIEL-DESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA 99
             V ++ D+++ D  ++      +++DF+A WCG CK ++P+L E +       + +V+ 
Sbjct: 5   AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQ---FADNVVVL 61

Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK 147
           KVD D+   +A +  I + PT     +G+  E +    A+ L   +K 
Sbjct: 62  KVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 109

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 44.9 bits (105), Expect = 6e-07
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 63  ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
            +  F +P C HC      ++E A  +    E   I  ++  + +    +  I A PT+ 
Sbjct: 5   KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAM---EYGIMAVPTIV 61

Query: 123 IFMHGIPTEYYGPRKAELLVRYLKKFV 149
           I       E+ G    E LV  +KK +
Sbjct: 62  INGDV---EFIGAPTKEALVEAIKKRL 85

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 44.8 bits (105), Expect = 9e-07
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 45  VIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
           V+++     F + +S     +  F A WCG CK +   +++ A         +  AKVDA
Sbjct: 10  VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYE----FPTVKFAKVDA 65

Query: 104 DKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
           D  S + SK  +   PT  I   G    +       +L + L+  +
Sbjct: 66  DNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDII 111

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 18/118 (15%)

Query: 153 VSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVL 212
            + L   A     VE++       IGF  D             K +   A+   +    +
Sbjct: 2   ATTLPDGAAAESLVESSEVAV---IGFFKDVE-------SDSAKQFLQAAEAIDDIPFGI 51

Query: 213 YDFDKV--------PALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDT 262
                V          +V  +      N F G   +E L +FIK N LPL +   + T
Sbjct: 52  TSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQT 109

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 9/88 (10%)

Query: 64  LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123
           L  F    C  C      L          +  +    +   + S    + + D       
Sbjct: 19  LTLFTKAPCPLCDEAKEVLQPYKD-----RFILQEVDITLPENSTWYERYKFD---IPVF 70

Query: 124 FMHGIPTEYYGPRKAELLVRYLKKFVAP 151
            ++G             L + L+K   P
Sbjct: 71  HLNGQF-LMMHRVNTSKLEKQLRKLSGP 97

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 17/110 (15%), Positives = 28/110 (25%), Gaps = 19/110 (17%)

Query: 48  LDESNFDSAISSFD--YILVDFYA-------PWCGHCKRLAPQLDEAAPILAKLKEPIVI 98
                F  A+   +   I   F          WC  C +  P + E       + E  V 
Sbjct: 7   SGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKH---ISEGCVF 63

Query: 99  AKVDAD-------KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELL 141
                          +      ++ A PTL  +            +A L+
Sbjct: 64  IYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLV 113

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 2/103 (1%)

Query: 45  VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLD-EAAPILAKLKEPIVIAKVDA 103
           +          A+   +          C +C++ A  L    A   A +           
Sbjct: 11  LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQL 70

Query: 104 DKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYL 145
           +      S+  I   P       G I         A+ +  + 
Sbjct: 71  NDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 113

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 42.4 bits (99), Expect = 5e-06
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 61  DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120
           D+    +Y+  C +C  +   L+      A L   I    +D   +    +++ +   P 
Sbjct: 16  DFEFETYYSLSCHNCPDVVQALNLM----AVLNPRIKHTAIDGGTFQNEITERNVMGVPA 71

Query: 121 LKIFMHGIPTEYYGPRKAELLVRYLK 146
             +F++G      G      +V  + 
Sbjct: 72  --VFVNGKE-FGQGRMTLTEIVAKVD 94

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 252 LPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGI 310
            PL   I  +T +        +       ET E+ ++L   LK  A A R  + F  +  
Sbjct: 5   SPLIGEIGPETYSDYMSAGIPLAYIFA--ETAEERKELSDKLKPIAEAQRGVINFGTIDA 62

Query: 311 KQFADFADTFEANKKSKLPKMVVWDGNENY 340
           K F   A      K  K P   + +  +N 
Sbjct: 63  KAFGAHAGNL-NLKTDKFPAFAIQEVAKNQ 91

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 61  DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120
            Y L+     WC  C+     LD       +L+  I +A +   +      ++       
Sbjct: 55  RYRLLVAGEMWCPDCQINLAALDF----AQRLQPNIELAIISKGRAEDDLRQRLALERIA 110

Query: 121 LKIFMH 126
           + + + 
Sbjct: 111 IPLVLV 116

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 41 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQ 81
          + G+   L+       +      L+ F++  C  CK   PQ
Sbjct: 10 LTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQ 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.94
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.93
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.93
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.91
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.91
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.9
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.9
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.9
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.9
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.9
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.86
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.85
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.85
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.85
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.85
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.85
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.84
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.84
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.84
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.83
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.81
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.79
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.79
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.77
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.76
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.74
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.72
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.7
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.64
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.61
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.41
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	99.38
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.27
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.23
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	99.23
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.2
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.17
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.17
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	99.16
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.16
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.13
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.11
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.11
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.05
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.05
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.05
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.0
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.89
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.85
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.85
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.78
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.76
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.58
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.56
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.5
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.47
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.37
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.34
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.31
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.3
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	98.3
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.22
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.16
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.15
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.13
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.08
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.08
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.06
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.02
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.01
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.0
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.99
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	97.97
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	97.96
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	97.95
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.93
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	97.92
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.91
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	97.86
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.84
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	97.81
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	97.79
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.79
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.76
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.76
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	97.71
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.7
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	97.61
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.61
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.61
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.52
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	97.51
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.5
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.48
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.45
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.43
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	97.42
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.41
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.35
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.34
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	97.33
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.23
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.2
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.14
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.13
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.02
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.0
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	96.99
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.97
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.91
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.72
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	96.7
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.65
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	96.6
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	96.59
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	96.56
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	96.52
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.42
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.41
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	96.4
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	96.32
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	96.02
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	95.87
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	95.35
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	94.56
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.51
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	93.9
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	93.55
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	93.15
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	92.87
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	92.45
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	92.36
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	91.66
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	91.38
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	88.07
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	87.73
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	86.08
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	80.85
d1pzxa_	287	Hypothetical protein apc36103 {Bacillus stearother	80.37

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.3e-26  Score=175.12  Aligned_cols=112  Identities=38%  Similarity=0.736  Sum_probs=102.3

Q ss_pred             ccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           38 KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        38 ~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      ..+.++.|++|++++|++++++++.++|.||+|||++|+++.|.|+++++.+.+  ..+.|+.|||++++++|++|+|.+
T Consensus         5 ~~~~~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~   82 (119)
T d2b5ea4           5 VAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE--KNITLAQIDCTENQDLCMEHNIPG   82 (119)
T ss_dssp             SCCTTSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TTCEEEEEETTTCHHHHHHTTCCS
T ss_pred             CCCCCCccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcc--cceeeeeeeccchHHHHHHhcccc
Confidence            345678999999999999999999999999999999999999999999998754  349999999999999999999999


Q ss_pred             CCEEEEEeCCE---EEeecCCCCHHHHHHHHHhhcCC
Q 017971          118 FPTLKIFMHGI---PTEYYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       118 ~Pt~~~~~~g~---~~~y~g~~~~~~i~~~i~~~~~~  151 (363)
                      +||+++|++|+   .+.|.|.++.+.|++|+.++.+|
T Consensus        83 ~Pti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          83 FPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP  119 (119)
T ss_dssp             SSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTSC
T ss_pred             CCeEEEEECCEEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            99999999885   45699999999999999998875

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.93  E-value=1.5e-25  Score=173.38  Aligned_cols=112  Identities=19%  Similarity=0.276  Sum_probs=96.8

Q ss_pred             cCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhh------hhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh
Q 017971           39 FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHC------KRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK  112 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C------~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~  112 (363)
                      ++..+.|++||++||++++++++.++|.||+|||+||      +.+.+.++.+|+.+++  ..+.|++|||++++++|++
T Consensus         7 ~d~~~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~--~~v~~a~Vd~~~~~~l~~~   84 (124)
T d1a8ya1           7 YDGVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED--KGVGFGLVDSEKDAAVAKK   84 (124)
T ss_dssp             CCCCCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGG--GTEEEEEEETTTSHHHHHT
T ss_pred             cCCCCccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhcc--CCeEEEEEEeecccchhhc
Confidence            4456789999999999999999999999999999974      3444455555555543  3599999999999999999


Q ss_pred             CCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhcCCC
Q 017971          113 QEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       113 ~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~~~~  152 (363)
                      |+|.+|||+++|++|++++|.|.++.+.|++|+.+.+.++
T Consensus        85 ~~I~~yPTi~~f~~g~~~~y~G~r~~~~l~~fi~~~l~~P  124 (124)
T d1a8ya1          85 LGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVLEDP  124 (124)
T ss_dssp             TTCCSTTCEEEEESSSEEECCSCCSHHHHHHHHHHHHSCS
T ss_pred             cccccCCcEEEeccCccEEeeCCCCHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999987754

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.6e-26  Score=176.10  Aligned_cols=114  Identities=42%  Similarity=0.718  Sum_probs=105.5

Q ss_pred             cCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           39 FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      |...+.|+.|++++|+++++++++++|.|||+||++|+.+.|.|.++++.+.+.+..+.++.|||++++.+|++|+|.++
T Consensus         3 p~~~~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   82 (120)
T d1meka_           3 PEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY   82 (120)
T ss_dssp             CCEETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSS
T ss_pred             CCCCCCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccC
Confidence            33467899999999999999999999999999999999999999999999987777899999999999999999999999


Q ss_pred             CEEEEEeCCEE---EeecCCCCHHHHHHHHHhhcCCC
Q 017971          119 PTLKIFMHGIP---TEYYGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       119 Pt~~~~~~g~~---~~y~g~~~~~~i~~~i~~~~~~~  152 (363)
                      ||+++|++|+.   ..|.|.++.++|++|+.++++|+
T Consensus        83 Pt~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          83 PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             CeEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhCCC
Confidence            99999998854   46899999999999999999886

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.91  E-value=4e-24  Score=161.20  Aligned_cols=104  Identities=22%  Similarity=0.472  Sum_probs=95.7

Q ss_pred             CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      ..|+++|+++|++.+ +++++++|.|||+||++|+++.|.|+++++.+.+.   +.++.+||++++++|++|+|+++||+
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~~~~l~~~~~I~~~Pt~   78 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNPTTVKKYKVEGVPAL   78 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTCHHHHHHTTCCSSSEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceecccccHHHHHHhcccCCCEE
Confidence            359999999999855 77789999999999999999999999999887653   99999999999999999999999999


Q ss_pred             EEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          122 KIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|++|+.+ +|.|.++.+.|.+|+++++
T Consensus        79 ~~~~~g~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          79 RLVKGEQILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            999999877 5899999999999999875

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.91  E-value=5.2e-24  Score=159.68  Aligned_cols=102  Identities=34%  Similarity=0.598  Sum_probs=95.4

Q ss_pred             eEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971           45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        45 v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      ++.||+++|++.++++++++|.|||+||++|+.+.|.|+++++.+.+   ++.|+.+||++++++|++|+|.++||+++|
T Consensus         2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~   78 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD---KVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT---TCEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCC---ceEEEEEECCCCcccHHHCCcceeeEEEEE
Confidence            57899999999999999999999999999999999999999998765   399999999999999999999999999999


Q ss_pred             eCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          125 MHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       125 ~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|+.+ ++.|..+.+.|.+++.+.+
T Consensus        79 ~~G~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          79 KGGEPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred             ECCEEEEEEECCCCHHHHHHHHHHHh
Confidence            999876 5899999999999998764

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.5e-23  Score=158.09  Aligned_cols=104  Identities=35%  Similarity=0.585  Sum_probs=95.4

Q ss_pred             CCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      +.|++||+++|++.+ +++++++|.|||+||++|+.+.|.+.+++..+..   ++.++.+|+++++.+|++|+|.++||+
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~PT~   78 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTL   78 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTCTTHHHHTTCCSSSEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhc---ceeeeeccccchhhHHHHhCCCcEEEE
Confidence            579999999999855 7789999999999999999999999999987644   599999999999999999999999999


Q ss_pred             EEEeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          122 KIFMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|++|+.+ +|.|.++.+.|.+|+.+++
T Consensus        79 ~~~~~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          79 LLFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            999999877 4999999999999998875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.90  E-value=1.1e-23  Score=157.57  Aligned_cols=102  Identities=29%  Similarity=0.575  Sum_probs=93.6

Q ss_pred             eEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEE
Q 017971           45 VIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI  123 (363)
Q Consensus        45 v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  123 (363)
                      |.+||+++|++.+ +++++++|.|||+||++|+++.|.|.++++.+.+.   +.++.+|+++++++|++|+|+++||+++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~~~~l~~~~~V~~~Pt~~~   77 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAPGIATQYNIRSIPTVLF   77 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEecccchhhhhhcceeeeeEEEE
Confidence            5789999999977 66678999999999999999999999999887553   8999999999999999999999999999


Q ss_pred             EeCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          124 FMHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       124 ~~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      |++|+.+ ++.|.++.+.|.+|+.+++
T Consensus        78 ~~~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          78 FKNGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             EETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            9999877 5899999999999999864

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=6.9e-24  Score=163.24  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=95.4

Q ss_pred             CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-----cchhhhhhCCc--C
Q 017971           44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----KYSRLASKQEI--D  116 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----~~~~l~~~~~i--~  116 (363)
                      .+++||+.||++++++++.+||+||||||+||+  .|+|.++++.+.....++.+++|||+     +++++|++|+|  +
T Consensus         3 g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~   80 (122)
T d2c0ga2           3 GCVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK   80 (122)
T ss_dssp             TCEECCTTTHHHHHTTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTT
T ss_pred             ceEEcChHhHHHHHhcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccC
Confidence            589999999999999999999999999999999  59999999998877778999999996     46899999988  5


Q ss_pred             cCCEEEEEeCCE----EEeecCCCCHHHHHHHHHhhcCC
Q 017971          117 AFPTLKIFMHGI----PTEYYGPRKAELLVRYLKKFVAP  151 (363)
Q Consensus       117 ~~Pt~~~~~~g~----~~~y~g~~~~~~i~~~i~~~~~~  151 (363)
                      ++||+++|++|.    .+.|.|.++.+.|.+|+.++.+-
T Consensus        81 ~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          81 NFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             SCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             CCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence            899999998874    34588999999999999999764

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.4e-23  Score=165.72  Aligned_cols=115  Identities=33%  Similarity=0.552  Sum_probs=100.6

Q ss_pred             cCCCCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           39 FKIDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      ...++.|++|+++||++.+ +.++++||.||||||++|+++.|.|.++|+.+.+....+.++.+||+.  .+|++|+|.+
T Consensus         8 ~~~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~--~~~~~~~v~~   85 (140)
T d2b5ea1           8 ENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE--NDVRGVVIEG   85 (140)
T ss_dssp             CCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG--CCCSSCCCSS
T ss_pred             ccCCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc--hhcccccccc
Confidence            3457889999999999988 567899999999999999999999999999988766678888888754  5899999999


Q ss_pred             CCEEEEEeCCE---EEeecCCCCHHHHHHHHHhhcCCCcee
Q 017971          118 FPTLKIFMHGI---PTEYYGPRKAELLVRYLKKFVAPDVSI  155 (363)
Q Consensus       118 ~Pt~~~~~~g~---~~~y~g~~~~~~i~~~i~~~~~~~v~~  155 (363)
                      +||+++|++|+   ++.|.|.++.+.|++|+.++....+..
T Consensus        86 ~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~~~~~  126 (140)
T d2b5ea1          86 YPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDG  126 (140)
T ss_dssp             SSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTCCCH
T ss_pred             CCeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCCCCCCh
Confidence            99999999875   346999999999999999987766553

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.90  E-value=2.6e-23  Score=156.36  Aligned_cols=104  Identities=28%  Similarity=0.554  Sum_probs=94.0

Q ss_pred             CeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .+..+|+++|++.+ +++++++|.|||+||++|+++.|.|.++++.+.+   ++.++.|||++++++|++|+|+++||++
T Consensus         2 ~~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~d~~~~l~~~~~V~~~Pt~~   78 (107)
T d1dbya_           2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD---KLKCVKLNTDESPNVASEYGIRSIPTIM   78 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TCEEEEEETTTCHHHHHHHTCCSSCEEE
T ss_pred             CceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcc---cceEEEEecccchhHHHHhcccceEEEE
Confidence            35678999999976 5667999999999999999999999999987654   4899999999999999999999999999


Q ss_pred             EEeCCEEE-eecCCCCHHHHHHHHHhhcC
Q 017971          123 IFMHGIPT-EYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       123 ~~~~g~~~-~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +|++|+.+ +|.|.++.+.|.+|+.++++
T Consensus        79 ~~~~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          79 VFKGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             EESSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             EEECCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            99999766 58999999999999998863

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.86  E-value=1.5e-21  Score=147.56  Aligned_cols=104  Identities=30%  Similarity=0.587  Sum_probs=92.7

Q ss_pred             CCeEEc-ChhhHHHhH----cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           43 GKVIEL-DESNFDSAI----SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        43 ~~v~~l-~~~~f~~~l----~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      ++|+.+ ++++|++.+    +++++++|.||++||++|+.+.|.|+++++.+.+   ++.|+.|||+++++++++|+|.+
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~---~v~~~~vd~d~~~~l~~~~~v~~   78 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDAVAAVAEAAGITA   78 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTTHHHHHHHTCCB
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccc---eEEEEEeeccccccccccccccC
Confidence            578888 678888877    4578999999999999999999999999988754   49999999999999999999999


Q ss_pred             CCEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhcC
Q 017971          118 FPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       118 ~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~  150 (363)
                      +||+++|++|+.+. +.| .+.++|.+|+.++..
T Consensus        79 ~Pt~~~~~~G~~v~~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          79 MPTFHVYKDGVKADDLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             SSEEEEEETTEEEEEEES-CCHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCEEEEEEeC-cCHHHHHHHHHHHhC
Confidence            99999999998775 777 589999999998864

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.85  E-value=2e-22  Score=153.83  Aligned_cols=108  Identities=31%  Similarity=0.614  Sum_probs=90.2

Q ss_pred             CCCeEEcChhhHHHhH-cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCE
Q 017971           42 DGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT  120 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l-~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt  120 (363)
                      ++.|..|+++||++.+ ++++++||.||||||++|+++.|.|+++++.+..... ..+..+++.+...+|.+++|.++||
T Consensus         1 ~g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~Pt   79 (116)
T d2djja1           1 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEF-KDRVVIAKVDATANDVPDEIQGFPT   79 (116)
T ss_dssp             SCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSC-TTSSEEEEEETTTSCCSSCCSSSSE
T ss_pred             CcCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccc-cceeEEEecccchhhhcccccCCCE
Confidence            4689999999999976 7788999999999999999999999999999875432 2233445555566678999999999


Q ss_pred             EEEEeCCE---EEeecCCCCHHHHHHHHHhhcC
Q 017971          121 LKIFMHGI---PTEYYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       121 ~~~~~~g~---~~~y~g~~~~~~i~~~i~~~~~  150 (363)
                      +++|++|+   .+.|.|.++.++|++||.++..
T Consensus        80 i~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~  112 (116)
T d2djja1          80 IKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  112 (116)
T ss_dssp             EEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             EEEEECCccCceEEecCCCCHHHHHHHHHHccC
Confidence            99998874   4569999999999999998764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.85  E-value=5.3e-21  Score=144.36  Aligned_cols=102  Identities=25%  Similarity=0.499  Sum_probs=90.6

Q ss_pred             CCCeEEcChhhHHHhHcC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-chhhhhhCCcCcC
Q 017971           42 DGKVIELDESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASKQEIDAF  118 (363)
Q Consensus        42 ~~~v~~l~~~~f~~~l~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~  118 (363)
                      -+.|.++|.++|.+.++.  +++++|.||++||++|+.+.|.|+++++++.+    +.++.+||++ ++++|++|+|+++
T Consensus         5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~----v~~~~vd~~~~~~~l~~~~~V~~~   80 (112)
T d1f9ma_           5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQENKTLAKELGIRVV   80 (112)
T ss_dssp             TTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSTTHHHHHHHCCSSS
T ss_pred             ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc----ceeecccccccchhhHhheeeccC
Confidence            468999999999999844  57999999999999999999999999988643    7899999975 7999999999999


Q ss_pred             CEEEEEeCCEEEe-ecCCCCHHHHHHHHHhh
Q 017971          119 PTLKIFMHGIPTE-YYGPRKAELLVRYLKKF  148 (363)
Q Consensus       119 Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~  148 (363)
                      ||+++|++|+.+. +.|. +.+.+++++++.
T Consensus        81 Pt~~~~k~G~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          81 PTFKILKENSVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             SEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             CEEEEEECCEEEEEEeCC-CHHHHHHHHHHc
Confidence            9999999999875 7885 678999998765

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=8.8e-21  Score=143.79  Aligned_cols=104  Identities=30%  Similarity=0.535  Sum_probs=91.8

Q ss_pred             CCCCeEEc-ChhhHHHhH----cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCc
Q 017971           41 IDGKVIEL-DESNFDSAI----SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEI  115 (363)
Q Consensus        41 ~~~~v~~l-~~~~f~~~l----~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i  115 (363)
                      .++.|+.+ +.++|++.+    +.+++++|.|||+||++|+.+.|.|+++++.+.    ++.|+.+|++++++++++|+|
T Consensus         4 ~~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~----~~~~~~vd~~~~~~l~~~~~V   79 (114)
T d1xfla_           4 EEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDELKSVASDWAI   79 (114)
T ss_dssp             CCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTSHHHHHHTTC
T ss_pred             CCCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccccc----ccceeEEEeeeceeeccccce
Confidence            45677877 778888766    557899999999999999999999999998764    389999999999999999999


Q ss_pred             CcCCEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          116 DAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       116 ~~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      +++||+++|++|+.+. +.|. +.++|.+|+.+++
T Consensus        80 ~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          80 QAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             CSSSEEEEEETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             eeeEEEEEEECCEEEEEEeCc-CHHHHHHHHHHhh
Confidence            9999999999998775 7774 7899999999886

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.85  E-value=5.3e-21  Score=142.41  Aligned_cols=96  Identities=35%  Similarity=0.734  Sum_probs=87.6

Q ss_pred             cChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCC
Q 017971           48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG  127 (363)
Q Consensus        48 l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  127 (363)
                      -+.++|+++++++++++|.||++||++|+.+.|.++++++.+.+    +.|+.+|+++++++|++|+|.++||+++|++|
T Consensus         6 ~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~----~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G   81 (103)
T d1syra_           6 TSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDEVSEVTEKENITSMPTFKVYKNG   81 (103)
T ss_dssp             CSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTTHHHHHHTTCCSSSEEEEEETT
T ss_pred             CCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccc----eEEEeeccccCcceeeeeeeecceEEEEEECC
Confidence            36789999999999999999999999999999999999987643    78999999999999999999999999999999


Q ss_pred             EEE-eecCCCCHHHHHHHHHhh
Q 017971          128 IPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       128 ~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                      +.+ ++.| .+.+.|.+|+.++
T Consensus        82 ~~v~~~~G-~~~~~l~~~i~k~  102 (103)
T d1syra_          82 SSVDTLLG-ANDSALKQLIEKY  102 (103)
T ss_dssp             EEEEEEES-CCHHHHHHHHHTT
T ss_pred             EEEEEEeC-cCHHHHHHHHHhh
Confidence            987 4888 4789999999876

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=4.1e-22  Score=153.15  Aligned_cols=105  Identities=22%  Similarity=0.320  Sum_probs=90.8

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCC----CeEEEEEeCccchhhhhhC--CcC
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKE----PIVIAKVDADKYSRLASKQ--EID  116 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~----~v~~~~vd~~~~~~l~~~~--~i~  116 (363)
                      ..+++||++||++++++++.+||+||+|||.+|..  |.|.++|+.+++...    .|.++.+||++++++|+++  +|.
T Consensus         4 ~~~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~   81 (122)
T d1g7ea_           4 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE   81 (122)
T ss_dssp             SSSCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSS
T ss_pred             CceEECCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccccc
Confidence            46899999999999999999999999999988864  899999999887533    3455666888999999986  478


Q ss_pred             cCCEEEEEeCCE---EEeecCCCCHHHHHHHHHhhc
Q 017971          117 AFPTLKIFMHGI---PTEYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       117 ~~Pt~~~~~~g~---~~~y~g~~~~~~i~~~i~~~~  149 (363)
                      +|||+++|++|.   ++.|.|.++.++|++|++++.
T Consensus        82 ~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          82 SYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             SCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTTS
T ss_pred             CCCeEEEEecCcccCceecCCCCCHHHHHHHHHhcc
Confidence            999999999985   467999999999999999873

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.84  E-value=5e-21  Score=144.98  Aligned_cols=103  Identities=29%  Similarity=0.515  Sum_probs=88.6

Q ss_pred             CCCeEEcCh-hh----HHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC
Q 017971           42 DGKVIELDE-SN----FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID  116 (363)
Q Consensus        42 ~~~v~~l~~-~~----f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~  116 (363)
                      .+.|+.++. ++    |++.+.++++++|.||++||++|+.+.|.|+++++.+.    ++.|+.+|+++++++|++|+|+
T Consensus         3 ~g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~d~~~~l~~~~~I~   78 (113)
T d1ti3a_           3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDELKAVAEEWNVE   78 (113)
T ss_dssp             CCCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTCHHHHHHHHCS
T ss_pred             CCcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCC----CceEEeeeeeccccccccCeec
Confidence            567777755 33    44555677899999999999999999999999998763    3889999999999999999999


Q ss_pred             cCCEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          117 AFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       117 ~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      ++||+++|++|+.+. +.| .+.+.|.+|+.++.
T Consensus        79 ~~Pt~~~~k~G~~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          79 AMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             STTEEEEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             ccceEEEEECCEEEEEEcC-CCHHHHHHHHHHHh
Confidence            999999999999876 566 67899999999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=2.6e-20  Score=140.62  Aligned_cols=104  Identities=29%  Similarity=0.600  Sum_probs=90.8

Q ss_pred             CCCeEEcC-hhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcC
Q 017971           42 DGKVIELD-ESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF  118 (363)
Q Consensus        42 ~~~v~~l~-~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~  118 (363)
                      .+.|.++. .++|++.+  .++++++|.|||+||++|+++.|.|+++++.+.+.   +.++.+|++++++++++|+|.++
T Consensus         4 ~~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d~~~~l~~~~~V~~~   80 (111)
T d1xwaa_           4 AAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDECEDIAMEYNISSM   80 (111)
T ss_dssp             SCCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CCeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEeecCcchhhcCCCccc
Confidence            45678884 57899888  45689999999999999999999999999887653   99999999999999999999999


Q ss_pred             CEEEEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          119 PTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       119 Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      ||+++|++|+.+. +.|. ..+.|.+||++++
T Consensus        81 Pt~~~~~~G~~v~~~~G~-~~~~l~~~I~~~l  111 (111)
T d1xwaa_          81 PTFVFLKNGVKVEEFAGA-NAKRLEDVIKANI  111 (111)
T ss_dssp             SEEEEEETTEEEEEEESC-CHHHHHHHHHHTC
T ss_pred             cEEEEEECCEEEEEEeCC-CHHHHHHHHHhcC
Confidence            9999999998765 7785 5678999998763

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-20  Score=139.83  Aligned_cols=100  Identities=25%  Similarity=0.443  Sum_probs=88.7

Q ss_pred             eEEc-ChhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           45 VIEL-DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        45 v~~l-~~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      |..+ ++++|++.+.  ++++++|.|||+||++|+++.|.|+++++.+.+    +.|+.+|++++++++++|+|.++||+
T Consensus         3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~----~~f~~vd~d~~~~l~~~~~v~~~Pt~   78 (107)
T d1gh2a_           3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLEVDVHQCQGTAATNNISATPTF   78 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc----ccccccccccchhhhhhcCceeceEE
Confidence            4444 6789999884  367999999999999999999999999987643    88999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          122 KIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|++|+.+. +.| .+.+.|.+++++++
T Consensus        79 ~~~~~G~~v~~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          79 QFFRNKVRIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             EEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeC-CCHHHHHHHHHHhh
Confidence            9999999875 788 58999999999875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.8e-20  Score=138.87  Aligned_cols=100  Identities=27%  Similarity=0.581  Sum_probs=86.8

Q ss_pred             eEEc-ChhhHHHhHcC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           45 VIEL-DESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        45 v~~l-~~~~f~~~l~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      |.++ +.++|++.+++  +++++|.|||+||++|+.+.|.+.++++.+.+    +.|+++|++++++++++|+|+++||+
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~d~~~~~~~~~~V~~~Pt~   77 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDCQDVASECEVKCMPTF   77 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCHHHHHHTTCCBSSEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc----ceeeecccccCHhHHHHcCceEEEEE
Confidence            3455 56789999843  57999999999999999999999999987643    77999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          122 KIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|++|+.+. +.|. +.+.|.+++++.+
T Consensus        78 ~~~~~G~~v~~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          78 QFFKKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEEETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEECCEEEEEEeCC-CHHHHHHHHHhhC
Confidence            9999998875 7785 7899999998753

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.83  E-value=4.7e-20  Score=139.22  Aligned_cols=101  Identities=27%  Similarity=0.434  Sum_probs=89.2

Q ss_pred             CeEEc-ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEE
Q 017971           44 KVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK  122 (363)
Q Consensus        44 ~v~~l-~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  122 (363)
                      .++++ +.++|+++++++++++|+|||+||++|+++.|.|+++++++.    ++.|+.||++++++++++|+|.++||++
T Consensus         9 ~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~~l~~~~~V~~~Pt~~   84 (113)
T d1r26a_           9 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNNSEIVSKCRVLQLPTFI   84 (113)
T ss_dssp             CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccc----cccccccccccchhhHHHccccCCCEEE
Confidence            35555 778899999999999999999999999999999999998764    4999999999999999999999999999


Q ss_pred             EEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          123 IFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       123 ~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      +|++|+.+. +.|. +.+.+.+++.+.+
T Consensus        85 ~~~~G~~v~~~~G~-~~~~l~~~l~~~i  111 (113)
T d1r26a_          85 IARSGKMLGHVIGA-NPGMLRQKLRDII  111 (113)
T ss_dssp             EEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEeCC-CHHHHHHHHHHHh
Confidence            999999875 7885 5778888777653

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.81  E-value=2.1e-19  Score=134.70  Aligned_cols=103  Identities=18%  Similarity=0.215  Sum_probs=87.6

Q ss_pred             EcChhhHHHhHcCCCeE-EEEEECCCChhhhhHHHHHHHHHHHhh-cCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEE
Q 017971           47 ELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILA-KLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF  124 (363)
Q Consensus        47 ~l~~~~f~~~l~~~~~~-lv~fy~~~C~~C~~~~~~~~~~a~~~~-~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  124 (363)
                      +|++++.+.+.+.++++ ++.||++||++|++..|.|.++|.... .....+.+..+|+++++++|++|+|.++||++++
T Consensus         1 ~l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~   80 (107)
T d1a8la2           1 NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ   80 (107)
T ss_dssp             CCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CCCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEE
Confidence            36778787776655655 556999999999999999999986543 2345699999999999999999999999999999


Q ss_pred             eCCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          125 MHGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       125 ~~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|+.+ ++.|.++.+.+.+++.+.+
T Consensus        81 ~~G~~~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          81 VNGEDRVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCeEEEEEECCCCHHHHHHHHHHhh
Confidence            999765 5899999999999998765

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.9e-19  Score=136.39  Aligned_cols=81  Identities=19%  Similarity=0.210  Sum_probs=73.6

Q ss_pred             ChhhHHHhHc--CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC
Q 017971           49 DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH  126 (363)
Q Consensus        49 ~~~~f~~~l~--~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~  126 (363)
                      +..++++++.  ++++++|.|||+||++|+++.|.++++++++.+.   +.|+.|||+++++++++|+|.++||+++|++
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~   85 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEVPDFNKMYELYDPCTVMFFFR   85 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCCTTTTSSCSCSSCEEEEEET
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeeccccchhhhhcCeeeEEEEEEEeC
Confidence            4678999883  4579999999999999999999999999998654   9999999999999999999999999999999


Q ss_pred             CEEEee
Q 017971          127 GIPTEY  132 (363)
Q Consensus       127 g~~~~y  132 (363)
                      |+.+..
T Consensus        86 g~~i~~   91 (137)
T d1qgva_          86 NKHIMI   91 (137)
T ss_dssp             TEEEEE
T ss_pred             CcEEEE
Confidence            988753

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=6.3e-20  Score=141.84  Aligned_cols=109  Identities=14%  Similarity=0.165  Sum_probs=97.0

Q ss_pred             CeEEcChhhHHHhHcCC--CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           44 KVIELDESNFDSAISSF--DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~--~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      ....++.++|+..+.+.  ++++|.|||+||++|+++.|.+.++++++.+.  .+.++.|||+++++++++|+|.++||+
T Consensus        18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~--~~~~a~Vd~d~~~~la~~~~V~~~PT~   95 (132)
T d2hfda1          18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQSEAIGDRFGVFRFPAT   95 (132)
T ss_dssp             TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS--CEEEEEECHHHHHHHHHHHTCCSCCEE
T ss_pred             CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC--cceeEEEEecCCHHHHHhhccCcceeE
Confidence            45678999999988554  57888899999999999999999999887654  388999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecCCCCHHHHHHHHHhhcCCCce
Q 017971          122 KIFMHGIPTE-YYGPRKAELLVRYLKKFVAPDVS  154 (363)
Q Consensus       122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~~~~~v~  154 (363)
                      ++|++|+.+. +.|.++.+++.++++..+.+...
T Consensus        96 ~~~~~G~~v~~~~G~~~~~~l~~~i~~ll~~~~e  129 (132)
T d2hfda1          96 LVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE  129 (132)
T ss_dssp             EEEETTEEEEEECCCSCHHHHHHHHHHHHSCSSC
T ss_pred             EEEEcCcEeeeecCCCCHHHHHHHHHHHhCcccc
Confidence            9999999875 89999999999999998887643

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.77  E-value=2.2e-19  Score=128.56  Aligned_cols=84  Identities=23%  Similarity=0.294  Sum_probs=75.2

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHH
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAE  139 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~  139 (363)
                      ++..++.|||+||++|+.+.|.|+++++.+.+   .+.+..+|+++++++|++|+|.++||++++++|+   +.|.++.+
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~---~~G~~~~~   75 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD---AVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE---FIGAPTKE   75 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS---SEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE---CCSSSSSH
T ss_pred             CceEEEEEECCCCcChHhhhhhcccccccccc---ccccccccccccccccccCCceEeeEEEEECCcE---EECCCCHH
Confidence            36789999999999999999999999987654   3899999999999999999999999999887764   67999999


Q ss_pred             HHHHHHHhhc
Q 017971          140 LLVRYLKKFV  149 (363)
Q Consensus       140 ~i~~~i~~~~  149 (363)
                      .|.+|+++++
T Consensus        76 ~l~~~i~~~L   85 (85)
T d1fo5a_          76 ALVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999998864

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=3.4e-19  Score=135.38  Aligned_cols=104  Identities=14%  Similarity=0.158  Sum_probs=79.3

Q ss_pred             CeEEcChhhHHHhHcC--CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEE
Q 017971           44 KVIELDESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL  121 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~--~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  121 (363)
                      ....++..+++..+++  ++++++.||++||++|+...|.+.++++.+.+.  ++.++.||+++++++|++|+|+++||+
T Consensus        12 g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~--~~~~~~Vd~d~~~~l~~~~~V~~~Pt~   89 (119)
T d2es7a1          12 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF--DWQVAVADLEQSEAIGDRFNVRRFPAT   89 (119)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTS--CCEEEEECHHHHHHHHHTTTCCSSSEE
T ss_pred             CCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC--ceEEEEEECCCCHHHHHhcCcCcceEE
Confidence            4567888999988854  458888999999999999999999999987543  489999999999999999999999999


Q ss_pred             EEEeCCEEEe-ecCCCCHHHHHHHHHhhc
Q 017971          122 KIFMHGIPTE-YYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       122 ~~~~~g~~~~-y~g~~~~~~i~~~i~~~~  149 (363)
                      ++|++|+.+. +.|.++.++++++++..+
T Consensus        90 ~~~~~G~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          90 LVFTDGKLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             EEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             EEEEcCeEEEEeeCCCCHHHHHHHHHHHh
Confidence            9999998774 999999999999998764

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.74  E-value=5.6e-18  Score=128.36  Aligned_cols=101  Identities=11%  Similarity=0.089  Sum_probs=86.4

Q ss_pred             CCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc----hhhhhhCCcCcC
Q 017971           43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLASKQEIDAF  118 (363)
Q Consensus        43 ~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~  118 (363)
                      ..+...+.+.++++++++++++|+||++||++|+++.|.|.++++..+.   .+.+..+|...+    .+++++|+|.++
T Consensus         9 ~~~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~---~v~~v~~~~~~~~~~~~~~~~~~~V~~~   85 (115)
T d1zmaa1           9 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA---HIYFINSEEPSQLNDLQAFRSRYGIPTV   85 (115)
T ss_dssp             TTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC---CCEEEETTCGGGHHHHHHHHHHHTCCSS
T ss_pred             eeeeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh---hhhhheeecccccccccccccccccccc
Confidence            4567788899999999999999999999999999999999999987643   366666654433    468899999999


Q ss_pred             CEEEEEeCCEEE-eecCCCCHHHHHHHHH
Q 017971          119 PTLKIFMHGIPT-EYYGPRKAELLVRYLK  146 (363)
Q Consensus       119 Pt~~~~~~g~~~-~y~g~~~~~~i~~~i~  146 (363)
                      ||+++|++|+.. ++.|.++.++|.+|+.
T Consensus        86 PTli~~~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          86 PGFVHITDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             CEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             cEEEEEECCEEEEEEcCCCCHHHHHHHHc
Confidence            999999999865 5999999999999974

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.72  E-value=3e-18  Score=122.38  Aligned_cols=80  Identities=21%  Similarity=0.251  Sum_probs=71.2

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVR  143 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~  143 (363)
                      ++.||||||++|+++.|.|+++++++.+   ++.++.+|++++++++++|+|.++||++++..   ..|.|.++.+.|.+
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~---~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~---~~~~G~~~~~~l~~   78 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEFGD---KIDVEKIDIMVDREKAIEYGLMAVPAIAINGV---VRFVGAPSREELFE   78 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCS---SCCEEEECTTTCGGGGGGTCSSCSSEEEETTT---EEEECSSCCHHHHH
T ss_pred             EEEEECCCCcchHHHHHHHhhhcccccc---cccccccccccchhhHHhcCceEeCEEEECCc---EEEEcCCCHHHHHH
Confidence            5569999999999999999999998754   49999999999999999999999999887433   35789999999999


Q ss_pred             HHHhhc
Q 017971          144 YLKKFV  149 (363)
Q Consensus       144 ~i~~~~  149 (363)
                      ++++.+
T Consensus        79 ~i~~~l   84 (85)
T d1nhoa_          79 AINDEM   84 (85)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            999875

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.70  E-value=7.2e-17  Score=117.71  Aligned_cols=89  Identities=15%  Similarity=0.260  Sum_probs=74.4

Q ss_pred             hhHHHhH-c-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCE
Q 017971           51 SNFDSAI-S-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI  128 (363)
Q Consensus        51 ~~f~~~l-~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  128 (363)
                      +++.+.+ + +++..++.||++||++|+.+.|.|++++...    +++.+..+|+++++++|++|+|+++||+++  +|+
T Consensus         4 ~~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~----~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~   77 (96)
T d1hyua4           4 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN----PRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGK   77 (96)
T ss_dssp             HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC----TTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTE
T ss_pred             HHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC----CceEEEEEecccchHHHhhcccccccEEEE--CCE
Confidence            3444444 2 3456788899999999999999999998753    349999999999999999999999999854  777


Q ss_pred             EEeecCCCCHHHHHHHHH
Q 017971          129 PTEYYGPRKAELLVRYLK  146 (363)
Q Consensus       129 ~~~y~g~~~~~~i~~~i~  146 (363)
                      .+ |.|.++.++|++++.
T Consensus        78 ~~-~~G~~~~~~l~~~le   94 (96)
T d1hyua4          78 EF-GQGRMTLTEIVAKVD   94 (96)
T ss_dssp             EE-EESCCCHHHHHHHHC
T ss_pred             EE-EecCCCHHHHHHHHh
Confidence            64 789999999999874

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.8e-16  Score=118.45  Aligned_cols=98  Identities=17%  Similarity=0.236  Sum_probs=78.2

Q ss_pred             eEEcChhhHHHhHc--CCCeEEEEEECC-------CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-------cchh
Q 017971           45 VIELDESNFDSAIS--SFDYILVDFYAP-------WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-------KYSR  108 (363)
Q Consensus        45 v~~l~~~~f~~~l~--~~~~~lv~fy~~-------~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-------~~~~  108 (363)
                      +...+.++|.+++.  ++++++|.|||+       ||++|+++.|.+.++++.+.+   ++.|+.||++       .+..
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~---~~~~~~vdv~~~~~~~d~~~~   80 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE---GCVFIYCQVGEKPYWKDPNND   80 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT---TEEEEEEECCCHHHHHCTTCH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC---ceEEEEEECCCCcccchhhhh
Confidence            45567788999984  446999999995       999999999999999977643   4999999984       5667


Q ss_pred             hhhhCCcCcCCEEEEEeCCEEEe-ecCCCCHHHHHHHHH
Q 017971          109 LASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLK  146 (363)
Q Consensus       109 l~~~~~i~~~Pt~~~~~~g~~~~-y~g~~~~~~i~~~i~  146 (363)
                      ++++|+|.++||+++|++|+.+. +.+ .+++.+..++.
T Consensus        81 l~~~~~V~~iPT~i~~~~g~~l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          81 FRKNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHHHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHH
T ss_pred             HHHhCCeEEEEEEEEEECCeEEeeeec-CCHHHHHHHhc
Confidence            99999999999999999887654 444 45566655554

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=3.4e-16  Score=118.81  Aligned_cols=97  Identities=20%  Similarity=0.348  Sum_probs=75.0

Q ss_pred             hhhHHHhH--cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----cchhhhhhCCcCcCCEEEE
Q 017971           50 ESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----KYSRLASKQEIDAFPTLKI  123 (363)
Q Consensus        50 ~~~f~~~l--~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----~~~~l~~~~~i~~~Pt~~~  123 (363)
                      .++++..+  .++++++|.|||+||++|+.+.|.+...++..+.. .++.+..+|+.    .+.+++++|+|.++||+++
T Consensus        10 ~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~   88 (117)
T d2fwha1          10 VDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL-ADTVLLQANVTANDAQDVALLKHLNVLGLPTILF   88 (117)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT-TTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhc-cceEEEecccccchhHHHHHHhhhehhhceEEEE
Confidence            35666666  45689999999999999999999985544433322 23667777764    4467899999999999999


Q ss_pred             Ee-CCEEE---eecCCCCHHHHHHHHHh
Q 017971          124 FM-HGIPT---EYYGPRKAELLVRYLKK  147 (363)
Q Consensus       124 ~~-~g~~~---~y~g~~~~~~i~~~i~~  147 (363)
                      |. +|+.+   ++.|.++++.+.+++++
T Consensus        89 ~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          89 FDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             ECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             EeCCCcEEecccccccCCHHHHHHHHhc
Confidence            95 57655   36799999999999976

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=4.9e-13  Score=111.88  Aligned_cols=102  Identities=22%  Similarity=0.312  Sum_probs=81.1

Q ss_pred             CCCeEEcC-hhhHHHhHcC---CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCc
Q 017971           42 DGKVIELD-ESNFDSAISS---FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA  117 (363)
Q Consensus        42 ~~~v~~l~-~~~f~~~l~~---~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~  117 (363)
                      -+.|.+++ .++|...+..   +..++|.||++||++|+.+.|.+.++|..+    +.+.|.+||++..+ +..+|++.+
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~----~~vkF~ki~~~~~~-~~~~~~i~~  172 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY----PMVKFCKIRASNTG-AGDRFSSDV  172 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTC----TTSEEEEEEHHHHT-CSTTSCGGG
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhc----ccceEEEEccccch-hHHhCCCCC
Confidence            46899996 5789888833   336899999999999999999999999765    34999999998765 668999999


Q ss_pred             CCEEEEEeCCEEEe-ecC-------CCCHHHHHHHHHhh
Q 017971          118 FPTLKIFMHGIPTE-YYG-------PRKAELLVRYLKKF  148 (363)
Q Consensus       118 ~Pt~~~~~~g~~~~-y~g-------~~~~~~i~~~i~~~  148 (363)
                      .||+++|++|..+. +.|       ..+.+.|..++.++
T Consensus       173 lPtl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         173 LPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             CSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CCeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            99999999998774 444       23455555555544

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.38  E-value=6.1e-13  Score=102.78  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=93.1

Q ss_pred             cCCCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          251 FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       251 ~~p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      .+|++.++|.+|+..+...+.|.+++|++.+  +..+++.+.++++|+++++ +.|+|+|+.++...++.||+ ...++|
T Consensus         4 ~lPLv~e~~~~n~~~~~~~~~pl~~lf~~~~--~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl-~~~~~P   80 (133)
T d2djka1           4 GSPLIGEIGPETYSDYMSAGIPLAYIFAETA--EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNL-KTDKFP   80 (133)
T ss_dssp             SCCCSEECCHHHHHHHHHTTSCEEEEECSCS--SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTC-CSSSSS
T ss_pred             CCCceeccChhhHHHHhcCCCCEEEEEeCCc--hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcC-CcccCC
Confidence            6899999999999999999999998887543  3457889999999999999 99999999999999999999 678899


Q ss_pred             eEEEEeCCC-CeeE--EEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNE-NYLT--VSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~-~y~~--~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++|++.++ ++|.  .+.+++.+.|.+||..++.
T Consensus        81 ~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~  115 (133)
T d2djka1          81 AFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             EEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCceecCCccccCCHHHHHHHHHHHHc
Confidence            999999874 3333  3667888999999999874

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=2.7e-11  Score=93.44  Aligned_cols=86  Identities=20%  Similarity=0.326  Sum_probs=68.2

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC-----------------------ccchhhhhhCCc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA-----------------------DKYSRLASKQEI  115 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i  115 (363)
                      ++++++|.||++||++|++..|.+.++++++++    +.+..++.                       +.+..+.+.|++
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~----~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v   99 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGV   99 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTC
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc----cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCC
Confidence            568999999999999999999999999987643    33343432                       133468888999


Q ss_pred             CcCCEEEEEe-CCEEEeecCCCCHHHHHHHHHhh
Q 017971          116 DAFPTLKIFM-HGIPTEYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       116 ~~~Pt~~~~~-~g~~~~y~g~~~~~~i~~~i~~~  148 (363)
                      .++|+.+++. +|+...+.|..+.++|.+.+.+.
T Consensus       100 ~~~P~~~iiD~~G~i~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         100 TQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             CSSSEEEEECTTCCEEEEESCCCHHHHHHHHHHH
T ss_pred             CccCeEEEECCCCeEEEEECCCCHHHHHHHHHhh
Confidence            9999999995 56644468999999999888764

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.23  E-value=1.6e-11  Score=95.88  Aligned_cols=102  Identities=15%  Similarity=0.197  Sum_probs=76.9

Q ss_pred             eEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc--------------------
Q 017971           45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--------------------  104 (363)
Q Consensus        45 v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--------------------  104 (363)
                      +..++.+...-...++++++|.|||+||++|++..|.+.++.++++..+  +.+..|...                    
T Consensus         8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~   85 (143)
T d2fy6a1           8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLNY   85 (143)
T ss_dssp             CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCC--cEEEEEeeeecccccchhhhhhhhhhcCC
Confidence            3444444444333567899999999999999999999999998877543  544444421                    


Q ss_pred             --------cchhhhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHhh
Q 017971          105 --------KYSRLASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       105 --------~~~~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                              .+.++++.|++.++|+++++ ++|+.+ .+.|..+.+.+.+++++.
T Consensus        86 ~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1          86 PKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             cccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence                    23467889999999999999 567654 478999999999988764

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=2.2e-11  Score=92.35  Aligned_cols=103  Identities=15%  Similarity=0.201  Sum_probs=88.8

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      +.+++++|+..+...+.|++++|+.  .++..+++++.++++|+++++ +.|+++|.+++...++.||+ + .+.|.+++
T Consensus         2 ~gei~~~~~~~y~~~~~Pl~~~f~~--~~~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl-~-e~~P~~~i   77 (125)
T d2b5ea3           2 FGEIDGSVFAQYVESGLPLGYLFYN--DEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNM-K-EQFPLFAI   77 (125)
T ss_dssp             SCBCCHHHHHHHHHTTSCEEEEEES--SHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTC-C-SCSSEEEE
T ss_pred             CCccCHHHHHHHHhcCCCEEEEEeC--ChHHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCC-C-ccCCcEEE
Confidence            5689999999999999999998885  455678999999999999999 99999999999999999999 4 57999999


Q ss_pred             EeCCC-CeeEE-------------EEEEeehhhhhHhhhhhc
Q 017971          334 WDGNE-NYLTV-------------SINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       334 ~~~~~-~y~~~-------------~~~~~~~~~~~~~~~~~~  361 (363)
                      ++..+ +.|..             +.+++.+-|..||..+|.
T Consensus        78 ~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~  119 (125)
T d2b5ea3          78 HDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK  119 (125)
T ss_dssp             EETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred             EecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHc
Confidence            99863 33332             467999999999999885

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.20  E-value=1.4e-10  Score=89.70  Aligned_cols=109  Identities=17%  Similarity=0.343  Sum_probs=83.8

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----  105 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----  105 (363)
                      |..+|+....+.++..+.+++-       ++++++|.||++||++|+...|.+.++.+.+.+.+  +.+..+++++    
T Consensus         2 G~~~P~f~l~~~~G~~~~l~~~-------~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~i~~~~~~~~   72 (137)
T d1st9a_           2 GSDAPNFVLEDTNGKRIELSDL-------KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIA   72 (137)
T ss_dssp             CEECCCCEEECTTSCEEEGGGG-------TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHH
T ss_pred             cCcCCCeEEECCCcCEEeHHHh-------CCCEEEEEEeeccccceeecccccccccccccccc--cccccccccchhhh
Confidence            3445666666677777777553       56899999999999999999999999999887653  7777776543    


Q ss_pred             ------------------chhhhhhCCcCcCCEEEEEe-CCEEE-eecCCCCHHHHHHHHHh
Q 017971          106 ------------------YSRLASKQEIDAFPTLKIFM-HGIPT-EYYGPRKAELLVRYLKK  147 (363)
Q Consensus       106 ------------------~~~l~~~~~i~~~Pt~~~~~-~g~~~-~y~g~~~~~~i~~~i~~  147 (363)
                                        +..+++.|++.++|+++++. +|+.+ .+.|..+.+.+.++++.
T Consensus        73 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_          73 VHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             HHHHHHHTTCCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCccccccccchhhhhhhccccceEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence                              23577889999999999995 56554 47899888888777643

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=5.5e-11  Score=91.90  Aligned_cols=87  Identities=15%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             cCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe---------------------CccchhhhhhCCcC
Q 017971           58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD---------------------ADKYSRLASKQEID  116 (363)
Q Consensus        58 ~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd---------------------~~~~~~l~~~~~i~  116 (363)
                      .++++++|.|||+||++|++..|.+.++++.    +-.+....++                     .+.+..+.+.|++.
T Consensus        18 ~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~----~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~   93 (136)
T d1z5ye1          18 TQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY   93 (136)
T ss_dssp             HSSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCC
T ss_pred             cCCCEEEEEEEcCcCCCcCccccchhhhhhh----hhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccC
Confidence            4789999999999999999999999988652    2123333222                     12345688899999


Q ss_pred             cCCEEEEEe-CCEEE-eecCCCCHHHHHHHHHhh
Q 017971          117 AFPTLKIFM-HGIPT-EYYGPRKAELLVRYLKKF  148 (363)
Q Consensus       117 ~~Pt~~~~~-~g~~~-~y~g~~~~~~i~~~i~~~  148 (363)
                      ++|+.+++. +|+.+ .+.|..+.+.+.+.+.+.
T Consensus        94 ~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~l  127 (136)
T d1z5ye1          94 GAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL  127 (136)
T ss_dssp             SBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHH
T ss_pred             CcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHH
Confidence            999999885 56655 478999888887776654

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=1.5e-10  Score=89.07  Aligned_cols=85  Identities=15%  Similarity=0.300  Sum_probs=66.5

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----------------------cchhhhhhCCcC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------------KYSRLASKQEID  116 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------~~~~l~~~~~i~  116 (363)
                      ++++++|.||++||++|++..|.+.++++..+    .+.+..|+.+                      .+..+++.|++.
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~----~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~   98 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVP   98 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCC
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhc----cccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCC
Confidence            56899999999999999999999999987643    2666666654                      234688889999


Q ss_pred             cCCEEEEEe-CCEEE---eecCCCCHHHHHHHHHh
Q 017971          117 AFPTLKIFM-HGIPT---EYYGPRKAELLVRYLKK  147 (363)
Q Consensus       117 ~~Pt~~~~~-~g~~~---~y~g~~~~~~i~~~i~~  147 (363)
                      ++|+++++. +|+..   ...|..+.+++.+-+..
T Consensus        99 ~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          99 WQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             SSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            999999996 45432   23577888888887754

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.6e-11  Score=88.00  Aligned_cols=103  Identities=27%  Similarity=0.356  Sum_probs=86.4

Q ss_pred             ceecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCC
Q 017971          153 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS  227 (363)
Q Consensus       153 v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~  227 (363)
                      ...|++..++++|+..++   +++|||+++.     ..+..+|..+++ ..|++  ..+.++...++++. |+|++|++.
T Consensus         2 a~~l~~~~~~e~f~~~~~---v~VVGfF~~~~~~~~~~F~~~A~~~~d-~~F~~--t~~~~v~~~~~v~~-~~Ivl~k~~   74 (110)
T d1bjxa_           2 ATTLPDGAAAESLVESSE---VAVIGFFKDVESDSAKQFLQAAEAIDD-IPFGI--TSNSDVFSKYQLDK-DGVVLFKKF   74 (110)
T ss_dssp             EEECCSHHHHHHHHHHSS---EEEEEECTTTTSHHHHHHHHHHHHCSS-SCEEE--ECCSHHHHHTTCSS-CEEEEEESS
T ss_pred             ceEcCCHHHHHHHhccCC---eEEEEEEcCCCchHHHHHHHHHHhCcC-ceEEE--ECCHHHHHHcCCCC-CeEEEeccC
Confidence            467889999999998876   6999998652     248888988854 44443  56788899999975 999999998


Q ss_pred             CCCcccccCCCCHHHHHHHHHhhcCCCcccCChhh
Q 017971          228 YNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDT  262 (363)
Q Consensus       228 ~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~lt~~~  262 (363)
                      ++....|.|.++.++|.+||..++.|++.++|.+|
T Consensus        75 de~~~~~~~~~~~~~l~~fi~~~~~PlV~e~~~e~  109 (110)
T d1bjxa_          75 DEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQT  109 (110)
T ss_dssp             SSSBCCCCSCCCHHHHHHHHHHHSSCCCSSCCCTT
T ss_pred             CccccccCCCCCHHHHHHHHHHcCcCcEEecCCCC
Confidence            88888889999999999999999999999999876

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=9.2e-11  Score=91.50  Aligned_cols=93  Identities=12%  Similarity=0.199  Sum_probs=71.7

Q ss_pred             HHhHcCCCeEEEEEECCCChhhhhHHHHH---HHHHHHhhcCCCCeEEEEEeCccc--hhhhhhCCcCcCCEEEEEe--C
Q 017971           54 DSAISSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKY--SRLASKQEIDAFPTLKIFM--H  126 (363)
Q Consensus        54 ~~~l~~~~~~lv~fy~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~--~  126 (363)
                      +.+.+++++++|+||++||+.|+.+.+..   .++.+.++..   +.+..+|.+..  ..++++|++.++|++.++.  +
T Consensus        36 ~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~  112 (147)
T d2dlxa1          36 ECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRT  112 (147)
T ss_dssp             HHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTT
T ss_pred             HHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchhhhhhhhheecCceeEEEEEeCCC
Confidence            33446789999999999999999998754   4455555443   88889997655  7789999999999999995  4


Q ss_pred             CEEEeecCCCCHHHHHHHHHhhc
Q 017971          127 GIPTEYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       127 g~~~~y~g~~~~~~i~~~i~~~~  149 (363)
                      |+.+..-|..+++++++.+++.+
T Consensus       113 ge~v~~~~~~~~~~fl~~L~~fl  135 (147)
T d2dlxa1         113 GQKLVEWHQLDVSSFLDQVTGFL  135 (147)
T ss_dssp             CCCCEEESSCCHHHHHHHHHHHH
T ss_pred             CeEecccCCCCHHHHHHHHHHHH
Confidence            77776667788887776665554

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.9e-11  Score=91.59  Aligned_cols=77  Identities=21%  Similarity=0.354  Sum_probs=61.1

Q ss_pred             HHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC-CcCcCCEEEEEe-CCEEE
Q 017971           53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ-EIDAFPTLKIFM-HGIPT  130 (363)
Q Consensus        53 f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~-~i~~~Pt~~~~~-~g~~~  130 (363)
                      +..+..++++++|.||++||++|+++.|.+.+..+..+ ...++....+|+++.+..+..+ ...++|+++++. +|+.+
T Consensus        18 l~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~   96 (135)
T d1sena_          18 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISE-LSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVH   96 (135)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHH-HHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBC
T ss_pred             HHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHH-hcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeEE
Confidence            55556788999999999999999999999987765433 2345999999999988887754 456789999996 56654

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.11  E-value=4.3e-10  Score=87.54  Aligned_cols=97  Identities=18%  Similarity=0.247  Sum_probs=72.9

Q ss_pred             cChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-----------------------
Q 017971           48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----------------------  104 (363)
Q Consensus        48 l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----------------------  104 (363)
                      +|.+.......++++++|.||++||++|++..|.+.++.+.+++.   +.+..|+..                       
T Consensus        17 ~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p   93 (143)
T d2b5xa1          17 LNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGKIKETAAEHDITQP   93 (143)
T ss_dssp             ESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSC
T ss_pred             cCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccchhhhhhHHHhhccCcc
Confidence            344444444457789999999999999999999999999887653   556656542                       


Q ss_pred             ----cchhhhhhCCcCcCCEEEEE-eCCEEE-eecCCCCHHHHHHHHHh
Q 017971          105 ----KYSRLASKQEIDAFPTLKIF-MHGIPT-EYYGPRKAELLVRYLKK  147 (363)
Q Consensus       105 ----~~~~l~~~~~i~~~Pt~~~~-~~g~~~-~y~g~~~~~~i~~~i~~  147 (363)
                          .+..+++.|++.++|+++++ ++|+.+ .+.|..+.+.+.+-+++
T Consensus        94 ~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          94 IFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             EEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             ccccCccchHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence                22347788999999999998 456654 57898888888877765

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=1.5e-10  Score=94.24  Aligned_cols=98  Identities=15%  Similarity=0.092  Sum_probs=76.7

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC------
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA------  103 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~------  103 (363)
                      |..+|+....+.++..+.|++-       ++++++|.||++||++|++..|.+.++++++++.   +.+..++.      
T Consensus         9 G~~aPdF~l~d~~G~~~~Lsd~-------kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~~~~   78 (187)
T d2cvba1           9 ESPLIDAELPDPRGGRYRLSQF-------HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKY   78 (187)
T ss_dssp             TCBCCCCEEECTTSCEEEGGGC-------CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTC
T ss_pred             CCccCccEeecCCCCEEEHHHh-------CCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeeccccccc
Confidence            4456666666677777776553       5689999999999999999999999999988653   77776653      


Q ss_pred             -----------------------ccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCC
Q 017971          104 -----------------------DKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRK  137 (363)
Q Consensus       104 -----------------------~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~  137 (363)
                                             +.+..+.++|++.++|+.+++.....+.|+|..+
T Consensus        79 ~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~id  135 (187)
T d2cvba1          79 PEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVN  135 (187)
T ss_dssp             GGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSS
T ss_pred             cccchHHHHHHHHHhCCcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeec
Confidence                                   1234588899999999999998766778988654

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=8.7e-11  Score=85.31  Aligned_cols=85  Identities=15%  Similarity=0.197  Sum_probs=70.3

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCH
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKA  138 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~  138 (363)
                      ..-+.++.|+++||++|+++.|.+++++..+.     ..+..+|.++++++.++|+++ +|++++  +|+.+ ..|..+.
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-----~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~-~~g~~d~   84 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-----LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFL-MMHRVNT   84 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-----EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEE-EESSCCH
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc-----eEEEecccccCHHHHHHhccc-CCceee--cCceE-EeCCCCH
Confidence            44688999999999999999999998875442     667889999999999999987 998764  66554 4588999


Q ss_pred             HHHHHHHHhhcCCC
Q 017971          139 ELLVRYLKKFVAPD  152 (363)
Q Consensus       139 ~~i~~~i~~~~~~~  152 (363)
                      +.|.+++++..++.
T Consensus        85 ~~L~~~L~~l~~~~   98 (100)
T d1wjka_          85 SKLEKQLRKLSGPS   98 (100)
T ss_dssp             HHHHHHHHSSSCSS
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999998876653

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.05  E-value=2.6e-10  Score=88.95  Aligned_cols=88  Identities=22%  Similarity=0.265  Sum_probs=65.7

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe---------------------CccchhhhhhCCcCc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD---------------------ADKYSRLASKQEIDA  117 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd---------------------~~~~~~l~~~~~i~~  117 (363)
                      ++++++|.||++||++|+...|.+.++.+..+.   .+....++                     -+.+..+.+.|++.+
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF---QLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYG  106 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTS---EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCc---eeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccc
Confidence            568999999999999999999999988654321   12222221                     123456889999999


Q ss_pred             CCEEEEEe-CCEEE-eecCCCCHHHHHHHHHhhc
Q 017971          118 FPTLKIFM-HGIPT-EYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       118 ~Pt~~~~~-~g~~~-~y~g~~~~~~i~~~i~~~~  149 (363)
                      +|+.+++. +|+.+ .+.|..+.+.+.+.+.+.+
T Consensus       107 ~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         107 VPETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             SCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             cceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            99999985 56654 4789999999888876654

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.05  E-value=4.6e-10  Score=87.35  Aligned_cols=72  Identities=19%  Similarity=0.268  Sum_probs=58.2

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch------------------------hhhhhCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS------------------------RLASKQE  114 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~  114 (363)
                      ++++++|.|||+||++|+++.|.+.++.+++++. ..+.+..|+.+++.                        .+.+.|+
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~-~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~  105 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD  105 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhc-cCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCC
Confidence            6799999999999999999999999999888653 35777777765332                        3678899


Q ss_pred             cCcCCEEEEEeC--CEEEe
Q 017971          115 IDAFPTLKIFMH--GIPTE  131 (363)
Q Consensus       115 i~~~Pt~~~~~~--g~~~~  131 (363)
                      |.++|+++++..  |+.+.
T Consensus       106 v~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_         106 VKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEE
T ss_pred             CCCcCEEEEEeCCCCEEEe
Confidence            999999999963  55554

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.00  E-value=9.1e-10  Score=85.73  Aligned_cols=72  Identities=19%  Similarity=0.329  Sum_probs=57.3

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccch------------------------hhhhhCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS------------------------RLASKQE  114 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~  114 (363)
                      ++++++|.|||+||++|++..|.+.++.+++.+ ..++.+..|+.++..                        ++.+.|+
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~-~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~  105 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV-AKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhh-ccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcC
Confidence            679999999999999999999999999988754 235777777764321                        3677899


Q ss_pred             cCcCCEEEEEeC--CEEEe
Q 017971          115 IDAFPTLKIFMH--GIPTE  131 (363)
Q Consensus       115 i~~~Pt~~~~~~--g~~~~  131 (363)
                      |.++|+++++..  |+.+.
T Consensus       106 v~~~Pt~~lID~~~G~Ii~  124 (144)
T d1o73a_         106 VESIPTLITINADTGAIIG  124 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEE
T ss_pred             CCcCCEEEEEECCCCEEEe
Confidence            999999999973  55443

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.89  E-value=4.8e-09  Score=81.45  Aligned_cols=74  Identities=19%  Similarity=0.261  Sum_probs=58.7

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc------------------------hhhhhhCC
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------------------SRLASKQE  114 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~  114 (363)
                      ++++++|.||++||++|+...|.+.++.+++... ..+.+..++.+++                        .++.+.|+
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~-~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~  103 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN  103 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccc-cccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcC
Confidence            6789999999999999999999999999988653 2466666765432                        24788899


Q ss_pred             cCcCCEEEEEe-C-CEEEeec
Q 017971          115 IDAFPTLKIFM-H-GIPTEYY  133 (363)
Q Consensus       115 i~~~Pt~~~~~-~-g~~~~y~  133 (363)
                      |.++|+++++. + |+.+...
T Consensus       104 v~~~Pt~~liD~~~G~Vi~~~  124 (144)
T d1o8xa_         104 VESIPTLIGVDADSGDVVTTR  124 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEESC
T ss_pred             CCcCCEEEEEeCCCCEEEEEe
Confidence            99999999997 3 5555443

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.85  E-value=3.1e-09  Score=76.53  Aligned_cols=94  Identities=13%  Similarity=0.179  Sum_probs=77.9

Q ss_pred             ceecCChHHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCC
Q 017971          153 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS  227 (363)
Q Consensus       153 v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~  227 (363)
                      |..|++.+++++|++..+.  +.+|||+++.     ..+..+|..+++.+.|++  +.++++++.++++ .|++++|++.
T Consensus         1 v~~i~~~~e~~~F~~~~d~--v~VvGfF~~~~~~~~~~F~~~A~~~rd~~~F~~--t~d~~va~~~~v~-~~~vvlfr~f   75 (102)
T d1a8ya2           1 VELIEGERELQAFENIEDE--IKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFA--TFDSKVAKKLTLK-LNEIDFYEAF   75 (102)
T ss_dssp             EEEECSHHHHHHHTTCCSS--CEEEEECSSTTCHHHHHHHHHHHHHTTTSCEEE--ECCHHHHHHHCCC-TTCEEEECTT
T ss_pred             CeeecCHHHHHHHhccCCC--EEEEEEECCCCcHHHHHHHHHHHHcCCCceEEE--ECCHHHHHHcCCC-CCCEEEeeec
Confidence            3568899999999985433  6899998642     348888999988877775  5679999999996 6999999998


Q ss_pred             CCCcccccCC-CCHHHHHHHHHhhc
Q 017971          228 YNEHNIFYGP-FDEEFLEEFIKQNF  251 (363)
Q Consensus       228 ~~~~~~~~g~-~~~~~l~~fi~~~~  251 (363)
                      ++....|.|. ++.++|.+||+.|+
T Consensus        76 de~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          76 MEEPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             CSSEEECSSSSCCHHHHHHHHHHTC
T ss_pred             CCCceecCCCCCCHHHHHHHHHHhc
Confidence            8888999985 89999999999985

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.85  E-value=1.5e-08  Score=81.43  Aligned_cols=108  Identities=21%  Similarity=0.336  Sum_probs=74.6

Q ss_pred             CccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-ch----
Q 017971           33 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YS----  107 (363)
Q Consensus        33 ~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~----  107 (363)
                      .|+....+.++..+.|++-       ++++++|.||++||++|+...+.+.++.+.+.+.+  +.+..|..+. ++    
T Consensus        36 ~Pdf~l~d~~G~~v~L~~~-------kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~~~~~  106 (176)
T d1jfua_          36 LPDLAFEDADGKPKKLSDF-------RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPK  106 (176)
T ss_dssp             CCCCEEECTTSCEEEGGGG-------TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHH
T ss_pred             CCCeEEECCCcCEEeHHHh-------CCCEEEEEeccCcccchHHHHHhhhhccccccccc--cccccccccccchhhhh
Confidence            4555566666766666542       66899999999999999999999999998876654  4444454331 11    


Q ss_pred             h-----------------------hhhhCCcCcCCEEEEEe-CCEEE-eecCC--CCHHHHHHHHHhhc
Q 017971          108 R-----------------------LASKQEIDAFPTLKIFM-HGIPT-EYYGP--RKAELLVRYLKKFV  149 (363)
Q Consensus       108 ~-----------------------l~~~~~i~~~Pt~~~~~-~g~~~-~y~g~--~~~~~i~~~i~~~~  149 (363)
                      +                       +...+++.++|+.+++. +|+.+ .+.|.  .+.++++++|+..+
T Consensus       107 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         107 TFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             HHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             hhHhhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence            1                       22234577789999885 56554 46774  45578888887664

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.78  E-value=1.8e-08  Score=73.60  Aligned_cols=102  Identities=10%  Similarity=0.188  Sum_probs=88.7

Q ss_pred             ccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEE
Q 017971          256 VPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVW  334 (363)
Q Consensus       256 ~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~  334 (363)
                      .++|.++++....+++|+++.|+.+ -....+.+...+.+++.++++ +.|+.+|++.++.+++.|++   ...|+++++
T Consensus         3 i~lt~~~f~~~i~~~k~vvv~F~a~-wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V---~~~Pt~~~~   78 (105)
T d1nw2a_           3 MTLTDANFQQAIQGDKPVLVDFWAA-WCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI---MSIPTLILF   78 (105)
T ss_dssp             EEECTTTHHHHTTSSSCEEEEEECT-TCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTC---CBSSEEEEE
T ss_pred             EEECHHHHHHHHhCCCcEEEEEECC-CCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCc---ceeeEEEEE
Confidence            3578899998888888888888754 677788899999999999987 99999999999999999999   679999999


Q ss_pred             eCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          335 DGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       335 ~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +.+.......|....+.++.++..+|+
T Consensus        79 ~~G~~~~~~~G~~~~~~l~~~i~~~L~  105 (105)
T d1nw2a_          79 KGGEPVKQLIGYQPKEQLEAQLADVLQ  105 (105)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHTTTTCC
T ss_pred             ECCEEEEEEECCCCHHHHHHHHHHHhC
Confidence            865567788899999999999998875

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.76  E-value=4.4e-08  Score=71.84  Aligned_cols=103  Identities=12%  Similarity=0.133  Sum_probs=87.3

Q ss_pred             CcccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          254 LSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       254 ~~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      .+.++|.++++. +..+++|+++.|+. ......+.+...+.+++.++.+ +.|+.+|++.++.+++.+++   ...|++
T Consensus         3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I---~~~Pt~   78 (108)
T d1thxa_           3 GVITITDAEFESEVLKAEQPVLVYFWA-SWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKV---EGVPAL   78 (108)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEEC-TTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTC---CSSSEE
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEEC-CCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcc---cCCCEE
Confidence            367889999986 66667788877774 4566777889999999999988 99999999999999999999   679999


Q ss_pred             EEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          332 VVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       332 vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++++.++......|....+.++.|+.+.|
T Consensus        79 ~~~~~g~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          79 RLVKGEQILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            99986556777889999999999999877

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.58  E-value=3.2e-07  Score=66.50  Aligned_cols=102  Identities=8%  Similarity=0.121  Sum_probs=85.3

Q ss_pred             cccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          255 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       255 ~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      +.++|..+++. +..+++|+++.|+. .-......+...+.++++++.+ +.++.+|.++++.+++.+|+   ...|+++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a-~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V---~~~Pt~~   76 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWA-PWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNI---RSIPTVL   76 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTC---CSSSEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEc-CccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcce---eeeeEEE
Confidence            35788889987 44666778877774 3566777889999999999987 89999999999999999999   7899999


Q ss_pred             EEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          333 VWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       333 i~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +++.+.......|....+.+..|+..+|
T Consensus        77 ~~~~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          77 FFKNGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             EEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEEcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            9975556777889999999999998876

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.56  E-value=8.4e-08  Score=76.12  Aligned_cols=77  Identities=18%  Similarity=0.204  Sum_probs=60.6

Q ss_pred             EcChhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC---CcCcCCEEE
Q 017971           47 ELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ---EIDAFPTLK  122 (363)
Q Consensus        47 ~l~~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~  122 (363)
                      .+++...+++.. +.+..++.||++||++|++..|.+.++++...    ++.+..|+.+++++..++|   +...+|.++
T Consensus        40 ~l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~----~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~  115 (166)
T d1z6na1          40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRAEDDLRQRLALERIAIPLVL  115 (166)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHHHHHTTTTTTCSSCCSSEEE
T ss_pred             cccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC----CCcEEEEECccCHHHHHHHHHhcccccccee
Confidence            356665655543 45778999999999999999999999987653    3778889999999999998   556788888


Q ss_pred             EEeCC
Q 017971          123 IFMHG  127 (363)
Q Consensus       123 ~~~~g  127 (363)
                      +..++
T Consensus       116 ~~d~~  120 (166)
T d1z6na1         116 VLDEE  120 (166)
T ss_dssp             EECTT
T ss_pred             ecCcc
Confidence            77544

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.50  E-value=4.8e-07  Score=65.90  Aligned_cols=102  Identities=13%  Similarity=0.204  Sum_probs=85.3

Q ss_pred             ccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEE
Q 017971          256 VPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV  333 (363)
Q Consensus       256 ~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi  333 (363)
                      ..+|.++++. +..+++|+++.|+.+ -......+...+.+++.++.+ +.|+.+|++.++.+++.+++   ..+|++++
T Consensus         4 ~~i~~~~f~~~v~~s~kpvlv~F~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V---~~~Pt~~~   79 (107)
T d1dbya_           4 GAVNDDTFKNVVLESSVPVLVDFWAP-WCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGI---RSIPTIMV   79 (107)
T ss_dssp             EEECHHHHHHHTTTCSSCEEEEEECT-TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTC---CSSCEEEE
T ss_pred             eEecHHHHHHHHHhCCCcEEEEEECC-CCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcc---cceEEEEE
Confidence            4578888876 456677888777754 567778888999999998876 99999999999999999999   78999999


Q ss_pred             EeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          334 WDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       334 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++.+.......|....+++..|+..+|.
T Consensus        80 ~~~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          80 FKGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             ESSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             EECCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            9865567777888999999999998873

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=7.9e-07  Score=66.10  Aligned_cols=104  Identities=11%  Similarity=0.156  Sum_probs=84.6

Q ss_pred             CCcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          253 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      +.+.++|.++++.+..+++++++.|+. .-....+.+...+.++|..+++  +.|+.||+++++.++..+++   ...|+
T Consensus        10 s~v~~lt~~~f~~~i~~~~~~lV~fya-~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt   85 (119)
T d2b5ea4          10 SAVVKLATDSFNEYIQSHDLVLAEFFA-PWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNI---PGFPS   85 (119)
T ss_dssp             SSCEECCTTTHHHHHTTCSEEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTC---CSSSE
T ss_pred             CccEEcCHHHHHHHHhcCCeEEEEEEC-CccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhcc---ccCCe
Confidence            356789999999887777777766664 4677778899999999998764  99999999999999999999   78999


Q ss_pred             EEEEeCC--CCeeEEEEEEeehhhhhHhhhhh
Q 017971          331 MVVWDGN--ENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       331 ~vi~~~~--~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ++++...  .+.....+..+.+.+..|+....
T Consensus        86 i~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          86 LKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             EEEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             EEEEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence            9999653  24555678889999999987654

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=2.2e-06  Score=62.32  Aligned_cols=102  Identities=15%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             cccCChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEE
Q 017971          255 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV  332 (363)
Q Consensus       255 ~~~lt~~~~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~v  332 (363)
                      +.++|.++++. +..+++++++.|+. .-....+.+...+.++|.++.+ +.++.+|.++.+.+++.||+   ...|+++
T Consensus         4 v~~lt~~~f~~~v~~~~~~v~v~F~a-~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v---~~~PT~~   79 (108)
T d2trxa_           4 IIHLTDDSFDTDVLKADGAILVDFWA-EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTLL   79 (108)
T ss_dssp             EEECCTTTHHHHTTTCSSEEEEEEEC-TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTC---CSSSEEE
T ss_pred             ceECCHHHHHHHHHhCCCcEEEEEEC-CCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCC---CcEEEEE
Confidence            56788899986 55666777766664 4566677888889899988776 99999999999999999999   6899999


Q ss_pred             EEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          333 VWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       333 i~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +++.+.......|....+.+..|+.+.|
T Consensus        80 ~~~~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          80 LFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            9976556777888889999999998876

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.34  E-value=1.3e-06  Score=65.45  Aligned_cols=104  Identities=13%  Similarity=0.141  Sum_probs=82.2

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeCCC-----hhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCC
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVEDET-----EEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKS  326 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~~-----~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~  326 (363)
                      .+.++|..|++.+..+.+.+++.|+.+--     .+....+...+..+|+...+  +.|+.||+..++.+++.+++   .
T Consensus        12 ~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I---~   88 (124)
T d1a8ya1          12 RVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL---T   88 (124)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTC---C
T ss_pred             ccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhcccc---c
Confidence            36789999999877777777777775521     12345556677777776544  99999999999999999999   6


Q ss_pred             CCCeEEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          327 KLPKMVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       327 ~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      .+|++.++.. |+....+|..+.+.+..|+...|+
T Consensus        89 ~yPTi~~f~~-g~~~~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          89 EEDSIYVFKE-DEVIEYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             STTCEEEEES-SSEEECCSCCSHHHHHHHHHHHHS
T ss_pred             cCCcEEEecc-CccEEeeCCCCHHHHHHHHHHhcC
Confidence            7999999975 566678899999999999999885

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.31  E-value=1.4e-06  Score=68.21  Aligned_cols=114  Identities=15%  Similarity=0.154  Sum_probs=76.5

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC-----
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA-----  103 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-----  103 (363)
                      |..+|+...++.++..+.|++     ...++++++|.|| +.||++|....+.+.+..+.+++.+  +.+..+..     
T Consensus         5 G~~aPdF~L~~~~G~~~~Lsd-----~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~~~   77 (160)
T d2cx4a1           5 GEKAPDFTLPNQDFEPVNLYE-----VLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVDSPWC   77 (160)
T ss_dssp             TSBCCCCEECCTTSCCEEHHH-----HHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC--CEEEEEESSCHHH
T ss_pred             CCCCcCeEeECCCCCEEehHH-----HhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc--cccccccccchhh
Confidence            556677766666666665443     3346789999998 8899999999999999888776654  55555543     


Q ss_pred             ----------------ccchhhhhhCCc----------CcCCEEEEEe-CCEEE-ee-----cCCCCHHHHHHHHHhhcC
Q 017971          104 ----------------DKYSRLASKQEI----------DAFPTLKIFM-HGIPT-EY-----YGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       104 ----------------~~~~~l~~~~~i----------~~~Pt~~~~~-~g~~~-~y-----~g~~~~~~i~~~i~~~~~  150 (363)
                                      +.+.++++.|++          ...|+.++.. +|+.. .+     .+..+.+++++-+++..+
T Consensus        78 ~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1          78 LKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             HHHHHHHHTCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             hhhhcccceeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence                            234567788887          3468888885 45432 12     233456777777776654

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.30  E-value=2.8e-06  Score=62.36  Aligned_cols=105  Identities=9%  Similarity=0.037  Sum_probs=79.3

Q ss_pred             cCCCcccC-ChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          251 FLPLSVPI-NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       251 ~~p~~~~l-t~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      ..|.+.++ |.+.+..+...++++++.|+.+ -....+.+...+.+++.+++++.|+.+|+++++.+++.+|+   ...|
T Consensus         6 ~~p~vi~i~s~~~~~~~~~~~~~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~V---~~~P   81 (113)
T d1r26a_           6 RYPSVVDVYSVEQFRNIMSEDILTVAWFTAV-WCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRV---LQLP   81 (113)
T ss_dssp             CCSCCEEECCHHHHHHHHHSSSCEEEEEECT-TCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CSSS
T ss_pred             CCCceEEeCCHHHHHHHHcCCCeEEEEEECC-CCccchhhceeccccccccccccccccccccchhhHHHccc---cCCC
Confidence            45666655 5678888777777777766644 56667788899999999999999999999999999999999   7899


Q ss_pred             eEEEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          330 KMVVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       330 ~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +++++..........|- ....+.+.+..+|
T Consensus        82 t~~~~~~G~~v~~~~G~-~~~~l~~~l~~~i  111 (113)
T d1r26a_          82 TFIIARSGKMLGHVIGA-NPGMLRQKLRDII  111 (113)
T ss_dssp             EEEEEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEEeCC-CHHHHHHHHHHHh
Confidence            99999765445555552 3455555555544

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2e-06  Score=62.80  Aligned_cols=100  Identities=20%  Similarity=0.222  Sum_probs=81.7

Q ss_pred             ChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCE
Q 017971           49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI  128 (363)
Q Consensus        49 ~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  128 (363)
                      +.+..++++++++.++|-|...--   ......|.++|+.+++    +.|+.+.   +.++++++++.. |++++|++..
T Consensus         7 ~~~~~e~f~~~~~v~VVGfF~~~~---~~~~~~F~~~A~~~~d----~~F~~t~---~~~v~~~~~v~~-~~Ivl~k~~d   75 (110)
T d1bjxa_           7 DGAAAESLVESSEVAVIGFFKDVE---SDSAKQFLQAAEAIDD----IPFGITS---NSDVFSKYQLDK-DGVVLFKKFD   75 (110)
T ss_dssp             SHHHHHHHHHHSSEEEEEECTTTT---SHHHHHHHHHHHHCSS----SCEEEEC---CSHHHHHTTCSS-CEEEEEESSS
T ss_pred             CHHHHHHHhccCCeEEEEEEcCCC---chHHHHHHHHHHhCcC----ceEEEEC---CHHHHHHcCCCC-CeEEEeccCC
Confidence            457788899898999999987643   3567889999988743    7788766   567899999976 9999999753


Q ss_pred             --EEeecCCCCHHHHHHHHHhhcCCCceecCCh
Q 017971          129 --PTEYYGPRKAELLVRYLKKFVAPDVSILNSD  159 (363)
Q Consensus       129 --~~~y~g~~~~~~i~~~i~~~~~~~v~~i~~~  159 (363)
                        ...|.|..+.+.|.+||..+.-|.|.+++.+
T Consensus        76 e~~~~~~~~~~~~~l~~fi~~~~~PlV~e~~~e  108 (110)
T d1bjxa_          76 EGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQ  108 (110)
T ss_dssp             SSBCCCCSCCCHHHHHHHHHHHSSCCCSSCCCT
T ss_pred             ccccccCCCCCHHHHHHHHHHcCcCcEEecCCC
Confidence              3347889999999999999999999999764

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.22  E-value=7.1e-06  Score=59.39  Aligned_cols=101  Identities=13%  Similarity=0.154  Sum_probs=81.9

Q ss_pred             cCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----CCC-cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA----NRE-LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       257 ~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~----~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      +|+.++.+.+....+++.+..|........++....+.++|..    +.+ +.+..+|+..++++++.||+   ...|++
T Consensus         1 ~l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V---~~vPTi   77 (107)
T d1a8la2           1 NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNV---MAVPKI   77 (107)
T ss_dssp             CCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTC---CSSCEE
T ss_pred             CCCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccccccccccccc---ccceEE
Confidence            4677888888888888888766566777778888888887753    333 89999999999999999999   678999


Q ss_pred             EEEeCCCCeeEEEEEEeehhhhhHhhhhh
Q 017971          332 VVWDGNENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       332 vi~~~~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      +++..........|....+.+.+++++.|
T Consensus        78 ~i~~~G~~~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          78 VIQVNGEDRVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEeCCeEEEEEECCCCHHHHHHHHHHhh
Confidence            88765556778889999999999998876

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=6e-06  Score=61.62  Aligned_cols=105  Identities=22%  Similarity=0.218  Sum_probs=85.0

Q ss_pred             EcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcC-cCCEEEEEe
Q 017971           47 ELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID-AFPTLKIFM  125 (363)
Q Consensus        47 ~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~-~~Pt~~~~~  125 (363)
                      +++.+|+.+.+..+.|.++.|+.+.-. -..+.+.+.++|+.+++.   +.|+.+|.+++....+.+|+. ..|.+.+..
T Consensus         4 ei~~~~~~~y~~~~~Pl~~~f~~~~~~-~~~~~~~~~~vAk~fkgk---i~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~   79 (125)
T d2b5ea3           4 EIDGSVFAQYVESGLPLGYLFYNDEEE-LEEYKPLFTELAKKNRGL---MNFVSIDARKFGRHAGNLNMKEQFPLFAIHD   79 (125)
T ss_dssp             BCCHHHHHHHHHTTSCEEEEEESSHHH-HHHHHHHHHHHHHHTTTT---CEEEEEEHHHHTTHHHHTTCCSCSSEEEEEE
T ss_pred             ccCHHHHHHHHhcCCCEEEEEeCChHH-HHHHHHHHHHHHHHhcCe---eEEEEEchHHhHHHHHHcCCCccCCcEEEEe
Confidence            578899999998889999999987644 568999999999988764   999999999999999999985 489998876


Q ss_pred             C--CEEEee-------------cCCCCHHHHHHHHHhhcCCCcee
Q 017971          126 H--GIPTEY-------------YGPRKAELLVRYLKKFVAPDVSI  155 (363)
Q Consensus       126 ~--g~~~~y-------------~g~~~~~~i~~~i~~~~~~~v~~  155 (363)
                      .  +.....             .+..+.+.|.+|+.+.+...+.+
T Consensus        80 ~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlkP  124 (125)
T d2b5ea3          80 MTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASP  124 (125)
T ss_dssp             TTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCC
T ss_pred             cccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCcCC
Confidence            4  333322             36789999999999887655443

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.15  E-value=7e-06  Score=62.04  Aligned_cols=105  Identities=18%  Similarity=0.184  Sum_probs=86.0

Q ss_pred             CeEEcChhhHHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCc--CcCCEE
Q 017971           44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEI--DAFPTL  121 (363)
Q Consensus        44 ~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i--~~~Pt~  121 (363)
                      -|.++|.+|+....+.+.+.++.|++..- ....+...+.++|+.+++   ++.|+.+|..++....+.+|+  ...|.+
T Consensus         7 Lv~e~~~~n~~~~~~~~~pl~~lf~~~~~-~~~~~~~~~~~vA~~~~~---ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~   82 (133)
T d2djka1           7 LIGEIGPETYSDYMSAGIPLAYIFAETAE-ERKELSDKLKPIAEAQRG---VINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CSEECCHHHHHHHHHTTSCEEEEECSCSS-SHHHHHHHHHHHHHSSTT---TSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             ceeccChhhHHHHhcCCCCEEEEEeCCch-HHHHHHHHHHHHHHHhcC---ceEEEEEeHHHhHHHHHHhcCCcccCCcE
Confidence            57899999999999888898888887653 568899999999988765   499999999999989999998  568999


Q ss_pred             EEEeC--CEEEee--cCCCCHHHHHHHHHhhcCCC
Q 017971          122 KIFMH--GIPTEY--YGPRKAELLVRYLKKFVAPD  152 (363)
Q Consensus       122 ~~~~~--g~~~~y--~g~~~~~~i~~~i~~~~~~~  152 (363)
                      .++..  +....|  .+..+.+.|.+|+++.....
T Consensus        83 ~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gk  117 (133)
T d2djka1          83 AIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGK  117 (133)
T ss_dssp             EEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTC
T ss_pred             EEEEcCCCceecCCccccCCHHHHHHHHHHHHcCC
Confidence            99853  333344  46789999999999987544

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=2.3e-06  Score=66.79  Aligned_cols=84  Identities=13%  Similarity=0.226  Sum_probs=60.9

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEE-------------------------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV-------------------------------------  101 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~v-------------------------------------  101 (363)
                      +.+.+++.|+.+.|++|++++|.+.++.+.    +..+.+...                                     
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~----~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  100 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  100 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc----CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccch
Confidence            447899999999999999999999987542    111222211                                     


Q ss_pred             -e----CccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHhhc
Q 017971          102 -D----ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV  149 (363)
Q Consensus       102 -d----~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~~~  149 (363)
                       .    ..++..+++++||+|+|+++ +.+|+.  +.|..+.+.|.++|.+..
T Consensus       101 ~~~~~~i~~~~~la~~lgv~GTPt~~-~~nG~~--v~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         101 ASCDVDIADHYALGVQLGVSGTPAVV-LSNGTL--VPGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCSSSEEE-CTTSCE--EESCCCHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHcCCcCCCEEE-EeCCeE--ecCCCCHHHHHHHHHHHH
Confidence             0    12345688899999999965 456754  469999999999987753

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.08  E-value=2e-06  Score=63.77  Aligned_cols=104  Identities=10%  Similarity=0.095  Sum_probs=72.1

Q ss_pred             cccCChhhHHhhhcCCCcEEEEE-EeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCeE
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAI-VEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKM  331 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~-~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~~  331 (363)
                      ...++..+++.........++++ +...-....+++...+.++++++++  +.++.||++.++.+++.||+   ...|++
T Consensus        13 ~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V---~~~Pt~   89 (119)
T d2es7a1          13 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNV---RRFPAT   89 (119)
T ss_dssp             CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTC---CSSSEE
T ss_pred             CceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCc---CcceEE
Confidence            45567777776554444444333 3344566778889999999999987  88899999999999999999   789999


Q ss_pred             EEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          332 VVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       332 vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      ++++..+......|....+.+..++.++|+
T Consensus        90 ~~~~~G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          90 LVFTDGKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             EEESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEcCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence            999766678888999999999999999885

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.08  E-value=1.4e-05  Score=57.36  Aligned_cols=94  Identities=9%  Similarity=0.188  Sum_probs=73.2

Q ss_pred             ChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCC
Q 017971          259 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE  338 (363)
Q Consensus       259 t~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~  338 (363)
                      |...++.+..+++++++.|+ .......+.+...+.++++++++..|+.+|.++++.+++.+++   ...|+++++....
T Consensus         7 s~~~f~~~i~~~~~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V---~~~Pt~i~~k~G~   82 (103)
T d1syra_           7 SQAEFDSIISQNELVIVDFF-AEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENI---TSMPTFKVYKNGS   82 (103)
T ss_dssp             SHHHHHHHHHHCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTC---CSSSEEEEEETTE
T ss_pred             CHHHHHHHHhCCCcEEEEEe-CCcccCcccccccchhhhhcccceEEEeeccccCcceeeeeee---ecceEEEEEECCE
Confidence            44666666666677776666 4467788889999999999999999999999999999999999   7899999998544


Q ss_pred             CeeEEEEEEeehhhhhHhh
Q 017971          339 NYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       339 ~y~~~~~~~~~~~~~~~~~  357 (363)
                      ......| ....++.+|+.
T Consensus        83 ~v~~~~G-~~~~~l~~~i~  100 (103)
T d1syra_          83 SVDTLLG-ANDSALKQLIE  100 (103)
T ss_dssp             EEEEEES-CCHHHHHHHHH
T ss_pred             EEEEEeC-cCHHHHHHHHH
Confidence            4455555 34667777765

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.8e-05  Score=56.99  Aligned_cols=96  Identities=10%  Similarity=0.122  Sum_probs=73.5

Q ss_pred             hhhHHhhh-cC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCC
Q 017971          260 QDTLNLLK-DD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN  337 (363)
Q Consensus       260 ~~~~~~l~-~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~  337 (363)
                      .+.++... .. ++++++.|+ ..-....+.+...+.++++.+++..|+.+|+++++.+++.+++   ...|++++++..
T Consensus         8 ~~~f~~~l~~~~~k~vvv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V---~~~Pt~~~~~~G   83 (105)
T d2ifqa1           8 KTAFQEALDAAGDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEV---KCMPTFQFFKKG   83 (105)
T ss_dssp             HHHHHHHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTC---CBSSEEEEEETT
T ss_pred             HHHHHHHHHhCCCCEEEEEEE-cCCccchhhhhhhhhhhccccccceeeecccccCHhHHHHcCc---eEEEEEEEEECC
Confidence            35555533 33 345555555 4467778889999999999999988999999999999999999   679999999765


Q ss_pred             CCeeEEEEEEeehhhhhHhhhhh
Q 017971          338 ENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       338 ~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      .......| ...++++.++..+|
T Consensus        84 ~~v~~~~G-~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          84 QKVGEFSG-ANKEKLEATINELV  105 (105)
T ss_dssp             EEEEEEES-CCHHHHHHHHHHHC
T ss_pred             EEEEEEeC-CCHHHHHHHHHhhC
Confidence            55666666 36788888887665

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.02  E-value=2.2e-05  Score=57.23  Aligned_cols=102  Identities=12%  Similarity=0.119  Sum_probs=76.5

Q ss_pred             CCcccCChhhHHhhhc-C-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccC-chhHHhhcCCCCCCCCC
Q 017971          253 PLSVPINQDTLNLLKD-D-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ-FADFADTFEANKKSKLP  329 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~-~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~-~~~~~~~~gi~~~~~~P  329 (363)
                      ..+.++|.+++..... + ++++++.|+ .......+.+...+.+++++++++.|+.+|.++ ++.+++.||+   ...|
T Consensus         6 g~v~~~~~d~f~~~l~~~~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~~~~~V---~~~P   81 (112)
T d1f9ma_           6 GKVTEVNKDTFWPIVKAAGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGI---RVVP   81 (112)
T ss_dssp             TSEEEECTTTHHHHHHTCTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCC---SSSS
T ss_pred             eeeEEeCHHHHHHHHHHcCCCEEEEEEE-cCCCcchHHHHHHHhhhccccccceeecccccccchhhHhheee---ccCC
Confidence            3567888888887643 3 356666665 446777788899999999999999999999964 7889999999   6799


Q ss_pred             eEEEEeCCCCeeEEEEEEeehhhhhHhhhh
Q 017971          330 KMVVWDGNENYLTVSINVLKTRVCFFMLTL  359 (363)
Q Consensus       330 ~~vi~~~~~~y~~~~~~~~~~~~~~~~~~~  359 (363)
                      ++++++.++.-....|. ...++.+++.+.
T Consensus        82 t~~~~k~G~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          82 TFKILKENSVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEEeCC-CHHHHHHHHHHc
Confidence            99999754444555553 446777776653

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.01  E-value=1.9e-05  Score=57.55  Aligned_cols=87  Identities=9%  Similarity=0.158  Sum_probs=70.4

Q ss_pred             cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEE
Q 017971          268 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSIN  346 (363)
Q Consensus       268 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~  346 (363)
                      .+++++++.|+ ..-....+.+...+.++++++++ +.|+.+|+++.+.+++.||+   ...|++++++.........+ 
T Consensus        22 ~~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v---~~~Pt~~~~~~G~~v~~~~G-   96 (112)
T d1ep7a_          22 EEHKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGI---TAMPTFHVYKDGVKADDLVG-   96 (112)
T ss_dssp             HHTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTC---CBSSEEEEEETTEEEEEEES-
T ss_pred             hcCCeEEEEEE-cCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccc---cCCCEEEEEECCEEEEEEeC-
Confidence            34677777766 44777888999999999999997 99999999999999999999   78999999975545555566 


Q ss_pred             EeehhhhhHhhhh
Q 017971          347 VLKTRVCFFMLTL  359 (363)
Q Consensus       347 ~~~~~~~~~~~~~  359 (363)
                      ...+.+..|+...
T Consensus        97 ~~~~~l~~~i~k~  109 (112)
T d1ep7a_          97 ASQDKLKALVAKH  109 (112)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            4778888887643

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.3e-05  Score=55.72  Aligned_cols=97  Identities=12%  Similarity=0.060  Sum_probs=72.5

Q ss_pred             ChhhHHh-hhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971          259 NQDTLNL-LKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG  336 (363)
Q Consensus       259 t~~~~~~-l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~  336 (363)
                      |.+.++. +..+ ++++++.|+ ..-....+.+...+.++|++++++.|+.+|.+..+.+.+.+|+   ...|+++++..
T Consensus         8 s~~~f~~~l~~~~~klvvv~F~-a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~v---~~~Pt~~~~~~   83 (107)
T d1gh2a_           8 SDPDFQPELSGAGSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNI---SATPTFQFFRN   83 (107)
T ss_dssp             SGGGHHHHHHHTTTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTC---CSSSEEEEEET
T ss_pred             CHHHHHHHHHhCCCCEEEEEEE-CCCCCCccccchhhhccccccccccccccccccchhhhhhcCc---eeceEEEEEEC
Confidence            3455554 3333 344544454 5578888899999999999999999999999999999999999   67999999976


Q ss_pred             CCCeeEEEEEEeehhhhhHhhhhh
Q 017971          337 NENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       337 ~~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                      ...-....| ....+++..+...|
T Consensus        84 G~~v~~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          84 KVRIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             TEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             CEEEEEEeC-CCHHHHHHHHHHhh
Confidence            555566666 35666777666554

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.99  E-value=1.9e-05  Score=62.11  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=71.7

Q ss_pred             CCCCCcccc----ccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017971           29 RGLSSEEET----KFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA  103 (363)
Q Consensus        29 ~~~~~~~~~----~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~  103 (363)
                      .|..+|+..    .++.++..+.|++  |     .+++++|.|| +.||+.|..-.+.+.+..+++.+.+  +.+..|+.
T Consensus         5 vG~~APdF~~~~~l~d~~g~~vsLsd--~-----~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~--~~v~~is~   75 (167)
T d1e2ya_           5 LNHPAPEFDDMALMPNGTFKKVSLSS--Y-----KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN--TEVISCSC   75 (167)
T ss_dssp             TTSBCCCCEEEEECSSSCEEEEEGGG--G-----TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT--EEEEEEES
T ss_pred             CCCCCCCCcccccccCCCCcEEeHHH--H-----CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc--eEEEeecC
Confidence            345566654    3445555666665  3     5678999999 9999999999999999999998754  66666665


Q ss_pred             cc----------------------------chhhhhhCCcC------cCCEEEEEe-CCEEE-eec----CCCCHHHHHH
Q 017971          104 DK----------------------------YSRLASKQEID------AFPTLKIFM-HGIPT-EYY----GPRKAELLVR  143 (363)
Q Consensus       104 ~~----------------------------~~~l~~~~~i~------~~Pt~~~~~-~g~~~-~y~----g~~~~~~i~~  143 (363)
                      +.                            +..+++.|++.      .+|+.++.. +|... .+.    ..++.+++++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~  155 (167)
T d1e2ya_          76 DSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIR  155 (167)
T ss_dssp             SCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred             CcHHhHHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHH
Confidence            32                            23466667762      367777775 45432 121    2345666666


Q ss_pred             HHH
Q 017971          144 YLK  146 (363)
Q Consensus       144 ~i~  146 (363)
                      -+.
T Consensus       156 ~l~  158 (167)
T d1e2ya_         156 LVE  158 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=3.6e-05  Score=59.66  Aligned_cols=100  Identities=14%  Similarity=0.106  Sum_probs=67.4

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC----
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA----  103 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~----  103 (363)
                      .|..+|+...++.++..+.|++     +..+++.+++.|| +.||+.|..-.+.+.+...+++..   +.+..|..    
T Consensus         7 vG~~aP~f~L~~~~g~~~~l~~-----~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~d~~~   78 (156)
T d2a4va1           7 IGDPIPDLSLLNEDNDSISLKK-----ITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSADSVT   78 (156)
T ss_dssp             TTCBCCSCEEECTTSCEEEHHH-----HHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEESCCHH
T ss_pred             CCCCCCCeEEECCCCCEEeeHH-----HcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeeccchhh
Confidence            3556777777777777666543     3345566666677 789999999999999999888653   33444543    


Q ss_pred             -----------------ccchhhhhhCCcCcCC------EEEEEeCCEEE-eecCCC
Q 017971          104 -----------------DKYSRLASKQEIDAFP------TLKIFMHGIPT-EYYGPR  136 (363)
Q Consensus       104 -----------------~~~~~l~~~~~i~~~P------t~~~~~~g~~~-~y~g~~  136 (363)
                                       +.+.+++++||+...|      +.++..+|+.. .|.|..
T Consensus        79 ~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~~~~~  135 (156)
T d2a4va1          79 SQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKIS  135 (156)
T ss_dssp             HHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEEESCC
T ss_pred             hHHhhhcccCccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEEEEeC
Confidence                             2445688888887766      45555777643 455544

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.96  E-value=3.9e-05  Score=56.08  Aligned_cols=88  Identities=11%  Similarity=0.111  Sum_probs=69.6

Q ss_pred             cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEE
Q 017971          268 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINV  347 (363)
Q Consensus       268 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~  347 (363)
                      .+++++++.|+. .-....+.+...+.++++.++++.|+.+|.++++.+++.||+   ...|+++++..........| .
T Consensus        26 ~~~~~vlv~F~a-~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~V---~~~Pt~~~~~~G~~v~~~~G-~  100 (114)
T d1xfla_          26 ESKTLVVVDFTA-SWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAI---QAMPTFMFLKEGKILDKVVG-A  100 (114)
T ss_dssp             HTTCEEEEEEEC-TTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTC---CSSSEEEEEETTEEEEEEES-C
T ss_pred             ccCCeEEEEEEc-CCCCCccccccchhhhcccccccceeEEEeeeceeeccccce---eeeEEEEEEECCEEEEEEeC-c
Confidence            445667666664 467778889999999999999999999999999999999999   68999999975545555555 3


Q ss_pred             eehhhhhHhhhhh
Q 017971          348 LKTRVCFFMLTLL  360 (363)
Q Consensus       348 ~~~~~~~~~~~~~  360 (363)
                      ....++.++..-|
T Consensus       101 ~~~~l~~~i~k~l  113 (114)
T d1xfla_         101 KKDELQSTIAKHL  113 (114)
T ss_dssp             CHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhh
Confidence            5678888877654

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=97.95  E-value=3.1e-05  Score=56.49  Aligned_cols=90  Identities=10%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             HHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeE
Q 017971          263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLT  342 (363)
Q Consensus       263 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~  342 (363)
                      +.....+++++++.|+. .-....+.+...+.++++++++..|+.+|+++.+.+++.+++   ...|++++++.......
T Consensus        19 l~~~~~~~k~vvv~F~a-~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I---~~~Pt~~~~k~G~~v~~   94 (113)
T d1ti3a_          19 FEKGKGSQKLIVVDFTA-SWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNV---EAMPTFIFLKDGKLVDK   94 (113)
T ss_dssp             HHHHTTSSSEEEEEEEC-SSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHC---SSTTEEEEEETTEEEEE
T ss_pred             HHHHHcCCCEEEEEEEc-CccccchhhhhhhhhhhccCCCceEEeeeeeccccccccCee---cccceEEEEECCEEEEE
Confidence            33444556677766664 567777889999999999999999999999999999999999   67999999985444455


Q ss_pred             EEEEEeehhhhhHhh
Q 017971          343 VSINVLKTRVCFFML  357 (363)
Q Consensus       343 ~~~~~~~~~~~~~~~  357 (363)
                      ..| ...+++..|+.
T Consensus        95 ~~G-~~~~~l~~~i~  108 (113)
T d1ti3a_          95 TVG-ADKDGLPTLVA  108 (113)
T ss_dssp             EEC-CCTTHHHHHHH
T ss_pred             EcC-CCHHHHHHHHH
Confidence            555 46677777764

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.93  E-value=9.3e-05  Score=58.02  Aligned_cols=82  Identities=20%  Similarity=0.203  Sum_probs=60.8

Q ss_pred             CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc-----------------------------------
Q 017971           61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------------------------------  105 (363)
Q Consensus        61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----------------------------------  105 (363)
                      +..++.|....|+||++++|.+.++.+.+... ..+.+......-                                   
T Consensus        25 ~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (172)
T d1z6ma1          25 PVKMIEFINVRCPYCRKWFEESEELLAQSVKS-GKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD  103 (172)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHT-TSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhhhhhhhccc-cceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhcc
Confidence            56799999999999999999999988776543 235554443110                                   


Q ss_pred             -------------------------------chhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHh
Q 017971          106 -------------------------------YSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK  147 (363)
Q Consensus       106 -------------------------------~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~  147 (363)
                                                     ....++++||.++||+++  +|+.  +.|..+.+++.++|++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~~--~~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         104 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI--FDESVTEEELRGYIEK  172 (172)
T ss_dssp             HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE--ECTTCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE--ecCCCCHHHHHHHHcC
Confidence                                           112455689999999876  7764  5799999999998864

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=1.6e-05  Score=60.49  Aligned_cols=101  Identities=18%  Similarity=0.161  Sum_probs=70.6

Q ss_pred             CCceecCChHHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHHhhhhh-HHHHh-hhcchhhhhhcCCCCCCe
Q 017971          151 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKKKA-WFAVA-KDFSEDTMVLYDFDKVPA  220 (363)
Q Consensus       151 ~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~p~  220 (363)
                      +.|..|++ .++++++.+...  +++|.|+..+        +.+.++|..+.+.. .+.++ .+.+..++..+++.++|+
T Consensus        12 ~~V~~l~~-~nf~~~v~~~~k--~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~~~~~~v~~~Pt   88 (140)
T d2b5ea1          12 SSVFQLVG-KNHDEIVNDPKK--DVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPT   88 (140)
T ss_dssp             CSEEEECT-TTHHHHHHCTTC--CEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSSCCCSSSSE
T ss_pred             CCcEEecC-cCHHHHHhcCCC--CEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccchhccccccccCCe
Confidence            46888877 469998865432  5777776553        34666676665432 12221 234567888999999999


Q ss_pred             EEEEcCCC-CCcccccCCCCHHHHHHHHHhhcCCC
Q 017971          221 LVALQPSY-NEHNIFYGPFDEEFLEEFIKQNFLPL  254 (363)
Q Consensus       221 iv~~~~~~-~~~~~~~g~~~~~~l~~fi~~~~~p~  254 (363)
                      +++|+++. .....|.|..+.++|.+||+++....
T Consensus        89 l~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~~  123 (140)
T d2b5ea1          89 IVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFD  123 (140)
T ss_dssp             EEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTC
T ss_pred             EEEEECCEEcceeEeCCCCCHHHHHHHHHHcCCCC
Confidence            99998643 34567899999999999999985443

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.91  E-value=6.4e-06  Score=63.65  Aligned_cols=82  Identities=20%  Similarity=0.186  Sum_probs=59.8

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe------------------------------------
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD------------------------------------  102 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd------------------------------------  102 (363)
                      ..+.+++.|+.+.|++|++++++.+++.+.    +..+.+....                                    
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~  100 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE  100 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhcc----CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccc
Confidence            346789999999999999999999888642    1123333211                                    


Q ss_pred             ------CccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHHHHHh
Q 017971          103 ------ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK  147 (363)
Q Consensus       103 ------~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~~i~~  147 (363)
                            ..++..+++++||+|+||+++ .+|.  ...|..+.+.|.+++.+
T Consensus       101 ~~~~~~i~~~~~la~~lGv~GTPt~~~-~nG~--~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         101 VKTPNIVKKHYELGIQFGVRGTPSIVT-STGE--LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             CCCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC--CCCSCCCHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHhcCcCCCCEEEE-cCCc--EecCCCCHHHHHHHHHh
Confidence                  113456888999999999875 4564  35788999999998875

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=8.7e-06  Score=60.24  Aligned_cols=104  Identities=7%  Similarity=0.093  Sum_probs=80.0

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC----cEEEEEeccCchhHHhhcCCCCCCCCC
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKLP  329 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~----~~f~~vd~~~~~~~~~~~gi~~~~~~P  329 (363)
                      .+..+|.++++....+++++++.|+.+ -....+.+...+.+++..+.+    +.++.+|+..++.++..+++   ..+|
T Consensus         8 ~V~~l~~~~f~~~l~~~k~vlV~Fya~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i---~~~P   83 (120)
T d1meka_           8 HVLVLRKSNFAEALAAHKYLLVEFYAP-WCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGV---RGYP   83 (120)
T ss_dssp             TEEECCTTTHHHHHHHCSEEEEEEECS-SCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTC---CSSS
T ss_pred             CeEEcCHHHHHHHHhcCCcEEEEEECC-CcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCC---ccCC
Confidence            356788999998777778888777754 444445666777777776542    89999999999999999999   6799


Q ss_pred             eEEEEeCCC--CeeEEEEEEeehhhhhHhhhhhc
Q 017971          330 KMVVWDGNE--NYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       330 ~~vi~~~~~--~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++++..+.  ......+....+.+..|+..-+.
T Consensus        84 t~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~  117 (120)
T d1meka_          84 TIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             EEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             eEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            999987643  34556777888899999987654

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.84  E-value=6.9e-05  Score=53.15  Aligned_cols=92  Identities=13%  Similarity=0.155  Sum_probs=72.4

Q ss_pred             ChhhHHHhHc-CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeC-
Q 017971           49 DESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH-  126 (363)
Q Consensus        49 ~~~~f~~~l~-~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~-  126 (363)
                      +.+.++.+++ +++.++|-|...--+   .....|.++|+.+...   +.||...   ++++++++++. .|++++|++ 
T Consensus         6 ~~~e~~~F~~~~d~v~VvGfF~~~~~---~~~~~F~~~A~~~rd~---~~F~~t~---d~~va~~~~v~-~~~vvlfr~f   75 (102)
T d1a8ya2           6 GERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPY---IPFFATF---DSKVAKKLTLK-LNEIDFYEAF   75 (102)
T ss_dssp             SHHHHHHHTTCCSSCEEEEECSSTTC---HHHHHHHHHHHHHTTT---SCEEEEC---CHHHHHHHCCC-TTCEEEECTT
T ss_pred             CHHHHHHHhccCCCEEEEEEECCCCc---HHHHHHHHHHHHcCCC---ceEEEEC---CHHHHHHcCCC-CCCEEEeeec
Confidence            3466888886 567889998875433   4678899999888543   8888776   78899999995 799999986 


Q ss_pred             -CEEEeecCC-CCHHHHHHHHHhhcC
Q 017971          127 -GIPTEYYGP-RKAELLVRYLKKFVA  150 (363)
Q Consensus       127 -g~~~~y~g~-~~~~~i~~~i~~~~~  150 (363)
                       .....|.|. .+.+.|.+|+.++..
T Consensus        76 de~~~~~~~~~~t~~~i~~Fi~~n~r  101 (102)
T d1a8ya2          76 MEEPVTIPDKPNSEEEIVNFVEEHRR  101 (102)
T ss_dssp             CSSEEECSSSSCCHHHHHHHHHHTCC
T ss_pred             CCCceecCCCCCCHHHHHHHHHHhcc
Confidence             346779985 899999999988753

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=6.7e-06  Score=61.91  Aligned_cols=105  Identities=10%  Similarity=0.099  Sum_probs=81.9

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEE-EeCCChhhHHHHHHHHHHHHHhCCC--cEEEEEeccCchhHHhhcCCCCCCCCCe
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAI-VEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPK  330 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~-~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~  330 (363)
                      -+..++..+++.........++++ +...-.....++...|.++++++.+  +.++.||++.++.+++.||+   ...|+
T Consensus        18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V---~~~PT   94 (132)
T d2hfda1          18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGV---FRFPA   94 (132)
T ss_dssp             TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTC---CSCCE
T ss_pred             CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhcc---Cccee
Confidence            455677888887554444433333 3333455566778899999999987  78899999999999999999   78999


Q ss_pred             EEEEeCCCCeeEEEEEEeehhhhhHhhhhhc
Q 017971          331 MVVWDGNENYLTVSINVLKTRVCFFMLTLLQ  361 (363)
Q Consensus       331 ~vi~~~~~~y~~~~~~~~~~~~~~~~~~~~~  361 (363)
                      +++++.........|......++.++..+|.
T Consensus        95 ~~~~~~G~~v~~~~G~~~~~~l~~~i~~ll~  125 (132)
T d2hfda1          95 TLVFTGGNYRGVLNGIHPWAELINLMRGLVE  125 (132)
T ss_dssp             EEEEETTEEEEEECCCSCHHHHHHHHHHHHS
T ss_pred             EEEEEcCcEeeeecCCCCHHHHHHHHHHHhC
Confidence            9999776678888999999999999998875

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=3.2e-05  Score=60.87  Aligned_cols=87  Identities=15%  Similarity=0.100  Sum_probs=62.3

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-------------------------cchhhhhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-------------------------KYSRLASK  112 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-------------------------~~~~l~~~  112 (363)
                      +++.++|.|| +.||+.|..-.+.+.+..+++++.+  +.+..|..+                         .+.+++++
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g--~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~  120 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQA  120 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHH
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccC--cceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHH
Confidence            5678888898 8999999999999999999998765  555555443                         33568888


Q ss_pred             CCc-----CcCCEEEEEe-CCEEE---eecC--CCCHHHHHHHHHh
Q 017971          113 QEI-----DAFPTLKIFM-HGIPT---EYYG--PRKAELLVRYLKK  147 (363)
Q Consensus       113 ~~i-----~~~Pt~~~~~-~g~~~---~y~g--~~~~~~i~~~i~~  147 (363)
                      ||+     ...|+.++.. +|...   .+..  .+..+++.+.+..
T Consensus       121 ygv~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         121 AGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             HTCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             cCCCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            888     5678888886 45432   1221  3567777776654

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=5.8e-05  Score=59.32  Aligned_cols=79  Identities=14%  Similarity=0.171  Sum_probs=58.6

Q ss_pred             CeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC-------------------------------------
Q 017971           61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA-------------------------------------  103 (363)
Q Consensus        61 ~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-------------------------------------  103 (363)
                      +..++.|+.+.|++|+++++..+++.+..     ++.+..++.                                     
T Consensus        37 ~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~  111 (169)
T d1v58a1          37 PVIVYVFADPFCPYCKQFWQQARPWVDSG-----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLN  111 (169)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHTT-----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCC
T ss_pred             CEEEEEEECCCCcchHHHHHHHHHHHhcc-----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccc
Confidence            57799999999999999999998876532     255555542                                     


Q ss_pred             -------------ccchhhhhhCCcCcCCEEEEEe-CCEEEeecCCCCHHHHHHH
Q 017971          104 -------------DKYSRLASKQEIDAFPTLKIFM-HGIPTEYYGPRKAELLVRY  144 (363)
Q Consensus       104 -------------~~~~~l~~~~~i~~~Pt~~~~~-~g~~~~y~g~~~~~~i~~~  144 (363)
                                   +++..+.+++||+++|++++.. +|......|..+.+.|.+-
T Consensus       112 ~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~i  166 (169)
T d1v58a1         112 VPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNII  166 (169)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHH
Confidence                         1223577788999999988865 4566568898888777654

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.76  E-value=0.00011  Score=51.78  Aligned_cols=89  Identities=12%  Similarity=0.049  Sum_probs=69.2

Q ss_pred             hHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCee
Q 017971          262 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYL  341 (363)
Q Consensus       262 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~  341 (363)
                      ..+.+.....+..+..|......-.+.+...+.++|..++++.|..+|.+.++++++.+|+   ...|++++   +|+. 
T Consensus         6 ~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I---~~vPt~~~---ng~~-   78 (96)
T d1hyua4           6 LLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNV---MGVPAVFV---NGKE-   78 (96)
T ss_dssp             HHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTC---CSSSEEEE---TTEE-
T ss_pred             HHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhccc---ccccEEEE---CCEE-
Confidence            3445555556666666656677888899999999999998999999999999999999999   67999865   4443 


Q ss_pred             EEEEEEeehhhhhHhh
Q 017971          342 TVSINVLKTRVCFFML  357 (363)
Q Consensus       342 ~~~~~~~~~~~~~~~~  357 (363)
                      ...|....+++..++-
T Consensus        79 ~~~G~~~~~~l~~~le   94 (96)
T d1hyua4          79 FGQGRMTLTEIVAKVD   94 (96)
T ss_dssp             EEESCCCHHHHHHHHC
T ss_pred             EEecCCCHHHHHHHHh
Confidence            3567778777777654

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.76  E-value=1.3e-05  Score=58.87  Aligned_cols=98  Identities=17%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             CCceecCChHHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHHhhhhhHH---HHhhhcchhhhhhcCCCCCC
Q 017971          151 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKKKAWF---AVAKDFSEDTMVLYDFDKVP  219 (363)
Q Consensus       151 ~~v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p  219 (363)
                      .+|+.|++ +++++++.+..  .+++|.|+..+        +.+.++|..+.+....   .+...........+++.++|
T Consensus         2 g~V~~lt~-~nF~~~v~~~~--k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P   78 (116)
T d2djja1           2 GPVTVVVA-KNYNEIVLDDT--KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFP   78 (116)
T ss_dssp             CSSEECCT-TTTTTSSSCTT--SCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSS
T ss_pred             cCcEEccc-CCHHHHHhcCC--CCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCC
Confidence            46778876 45887764333  26777777553        3466777777654322   12222334445678999999


Q ss_pred             eEEEEcCCC-CCcccccCCCCHHHHHHHHHhhc
Q 017971          220 ALVALQPSY-NEHNIFYGPFDEEFLEEFIKQNF  251 (363)
Q Consensus       220 ~iv~~~~~~-~~~~~~~g~~~~~~l~~fi~~~~  251 (363)
                      ++++|+.+. .....|.|..+.++|.+||+++.
T Consensus        79 ti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~  111 (116)
T d2djja1          79 TIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG  111 (116)
T ss_dssp             EEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             EEEEEECCccCceEEecCCCCHHHHHHHHHHcc
Confidence            999997643 34567899999999999999874

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.71  E-value=0.00017  Score=52.18  Aligned_cols=94  Identities=14%  Similarity=0.147  Sum_probs=71.2

Q ss_pred             hhhHHh-hh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971          260 QDTLNL-LK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG  336 (363)
Q Consensus       260 ~~~~~~-l~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~  336 (363)
                      .+.++. +. .+++++++.|+ ..-....+.+...+.+++.++++ +.++.+|.++++.+++.||+   ...|++++++.
T Consensus        13 ~~~~~~~l~~~~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V---~~~Pt~~~~~~   88 (111)
T d1xwaa_          13 KADLDGQLTKASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNI---SSMPTFVFLKN   88 (111)
T ss_dssp             HHHHHHHHHHHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTC---CSSSEEEEEET
T ss_pred             HHHHHHHHHhcCCCEEEEEEE-CCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCC---ccccEEEEEEC
Confidence            455654 33 34456666565 45677788999999999999998 89999999999999999999   67999999976


Q ss_pred             CCCeeEEEEEEeehhhhhHhhh
Q 017971          337 NENYLTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       337 ~~~y~~~~~~~~~~~~~~~~~~  358 (363)
                      ........|. ...+++.|+.+
T Consensus        89 G~~v~~~~G~-~~~~l~~~I~~  109 (111)
T d1xwaa_          89 GVKVEEFAGA-NAKRLEDVIKA  109 (111)
T ss_dssp             TEEEEEEESC-CHHHHHHHHHH
T ss_pred             CEEEEEEeCC-CHHHHHHHHHh
Confidence            5556666664 34567777654

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.70  E-value=0.00015  Score=58.09  Aligned_cols=109  Identities=13%  Similarity=0.085  Sum_probs=72.1

Q ss_pred             CCCCcccc----ccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           30 GLSSEEET----KFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        30 ~~~~~~~~----~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      +.++|+..    .++.+...+.|++  |     .++.+++.|| +.||+.|....+.+.+..+++...+  +.+..|.++
T Consensus         6 ~~PAPdFtl~a~l~d~~g~~vsLsd--~-----~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g--~~VlgIS~D   76 (194)
T d1uula_           6 LHPAPDFNETALMPNGTFKKVALTS--Y-----KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMD   76 (194)
T ss_dssp             TSBCCCCEEEEECTTSCEEEEEGGG--G-----TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESS
T ss_pred             CCCCCCCcccccccCCCCcEEehHH--h-----CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCc--eEEEEEecC
Confidence            34566655    2333334444443  3     4578999999 8999999999999999999987654  666666654


Q ss_pred             ----------------------------cchhhhhhCCcC------cCCEEEEEeCCEEEe----e--cCCCCHHHHHHH
Q 017971          105 ----------------------------KYSRLASKQEID------AFPTLKIFMHGIPTE----Y--YGPRKAELLVRY  144 (363)
Q Consensus       105 ----------------------------~~~~l~~~~~i~------~~Pt~~~~~~g~~~~----y--~g~~~~~~i~~~  144 (363)
                                                  .+.++++.||+.      .+|+.++......+.    +  .-.+..+++.+.
T Consensus        77 s~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~  156 (194)
T d1uula_          77 SEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRL  156 (194)
T ss_dssp             CHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred             chhhhhhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHH
Confidence                                        335688889883      356677765433332    1  224677777777


Q ss_pred             HHh
Q 017971          145 LKK  147 (363)
Q Consensus       145 i~~  147 (363)
                      +..
T Consensus       157 l~a  159 (194)
T d1uula_         157 VKA  159 (194)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.61  E-value=0.00016  Score=52.68  Aligned_cols=100  Identities=12%  Similarity=0.078  Sum_probs=79.1

Q ss_pred             CcccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC----chhHHhhcCCCCCCCC
Q 017971          254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ----FADFADTFEANKKSKL  328 (363)
Q Consensus       254 ~~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~----~~~~~~~~gi~~~~~~  328 (363)
                      .+...|.+.+.....+++++++.|.. ......+.+...+.+++.+++. +.++.+|...    .+.+.+.+|+   ...
T Consensus        10 ~~~~~t~~~~~~~i~~~~~~~v~f~~-~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V---~~~   85 (115)
T d1zmaa1          10 DLEVTTVVRAQEALDKKETATFFIGR-KTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGI---PTV   85 (115)
T ss_dssp             TSEECCHHHHHHHHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTC---CSS
T ss_pred             eeeeCCHHHHHHHHhcCCCEEEEEcC-CCCccHHHHHHHHHHHHHHhhhhhhhheeeccccccccccccccccc---ccc
Confidence            35566778888887888888777764 5788889999999999998876 6666665443    2568899999   678


Q ss_pred             CeEEEEeCCCCeeEEEEEEeehhhhhHhh
Q 017971          329 PKMVVWDGNENYLTVSINVLKTRVCFFML  357 (363)
Q Consensus       329 P~~vi~~~~~~y~~~~~~~~~~~~~~~~~  357 (363)
                      |++++++.++.....+|.+..+++.+|+.
T Consensus        86 PTli~~~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          86 PGFVHITDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             CEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             cEEEEEECCEEEEEEcCCCCHHHHHHHHc
Confidence            99999987666777889999999999874

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.61  E-value=0.00043  Score=48.37  Aligned_cols=87  Identities=15%  Similarity=0.305  Sum_probs=65.4

Q ss_pred             cccCChhhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---cEEEEEeccCchh----HHhhcCCCCCC
Q 017971          255 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFAD----FADTFEANKKS  326 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~----~~~~~gi~~~~  326 (363)
                      +++++.+++...-.. -....|+.|....+....++.++++++|+.+.+   +.|+|+|.+.+|-    +-+.|||+  -
T Consensus         2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~ID--l   79 (119)
T d1a8ya3           2 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDID--L   79 (119)
T ss_dssp             EEECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCC--T
T ss_pred             ccccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCC--C
Confidence            356666666665443 345667777788888899999999999998775   9999999999865    55779993  3


Q ss_pred             CCCeEEEEeCCC---CeeEE
Q 017971          327 KLPKMVVWDGNE---NYLTV  343 (363)
Q Consensus       327 ~~P~~vi~~~~~---~y~~~  343 (363)
                      ..|.+.+.+.+.   -++..
T Consensus        80 ~~PqIGVVdv~dadSvW~~~   99 (119)
T d1a8ya3          80 SAPQIGVVNVTDADSVWMEM   99 (119)
T ss_dssp             TSCEEEEEETTTCCEEECC-
T ss_pred             CCCceeeEecccCcceeeec
Confidence            459999999873   45544

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.61  E-value=9.8e-05  Score=53.88  Aligned_cols=84  Identities=23%  Similarity=0.394  Sum_probs=62.1

Q ss_pred             CeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCcCcCCEEEEEeCCEE--EeecCC
Q 017971           61 DYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFMHGIP--TEYYGP  135 (363)
Q Consensus        61 ~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~g~~--~~y~g~  135 (363)
                      +..++.|.+ ..|+.|..+...+++++..    .+++.+...|.+  ++++++++|+|...|++.+..+|+.  ++|.|-
T Consensus        23 pV~l~~~~~~~~~~~~~e~~~ll~ela~l----Sdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~Gi   98 (119)
T d1a8la1          23 PVKLIVFVRKDHCQYCDQLKQLVQELSEL----TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGL   98 (119)
T ss_dssp             CEEEEEEECSSSCTTHHHHHHHHHHHHTT----CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESC
T ss_pred             CEEEEEEecCCCchhHHHHHHHHHHHHhh----CCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEec
Confidence            344555554 4699999888888887753    345777777665  4678999999999999999998764  789997


Q ss_pred             CCHHHHHHHHHhh
Q 017971          136 RKAELLVRYLKKF  148 (363)
Q Consensus       136 ~~~~~i~~~i~~~  148 (363)
                      ..-.++..|+...
T Consensus        99 P~GhEf~SlilaI  111 (119)
T d1a8la1          99 PAGHEFAAFLEDI  111 (119)
T ss_dssp             CCTTHHHHHHHHH
T ss_pred             cCchhHHHHHHHH
Confidence            7666666665443

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.52  E-value=0.00017  Score=59.41  Aligned_cols=112  Identities=14%  Similarity=0.113  Sum_probs=74.9

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----  104 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----  104 (363)
                      |..+|+....+.++. +.+.+.    ...+++.+++.|| +.||+.|....+.+.+..+++++.+  +.+..+.++    
T Consensus         4 Gd~aPdF~l~t~~G~-i~~~d~----~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g--~~vigiS~Ds~~s   76 (237)
T d2zcta1           4 GERFPEMEVTTDHGV-IKLPDH----YVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVFS   76 (237)
T ss_dssp             TSBCCCEEEEETTEE-EEETHH----HHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHHH
T ss_pred             CCCCCCeEEEcCCCC-EEechH----hhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC--cceeeccCCcHHH
Confidence            344565555554443 333321    1235678888888 8999999999999999999998765  666656543    


Q ss_pred             -----------------------cchhhhhhCCc-------CcCCEEEEEeCCEEEe----e--cCCCCHHHHHHHHHhh
Q 017971          105 -----------------------KYSRLASKQEI-------DAFPTLKIFMHGIPTE----Y--YGPRKAELLVRYLKKF  148 (363)
Q Consensus       105 -----------------------~~~~l~~~~~i-------~~~Pt~~~~~~g~~~~----y--~g~~~~~~i~~~i~~~  148 (363)
                                             .+.++++.||+       ...|+.++......++    |  .-.|+.+++++.+...
T Consensus        77 h~~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1          77 HIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             HHHHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence                                   34568888998       4678888886543332    2  1246888888887543

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.51  E-value=0.0003  Score=51.79  Aligned_cols=104  Identities=16%  Similarity=0.283  Sum_probs=73.0

Q ss_pred             CCcccCChhhHHhhhcCCCcEEEEEEeCC--ChhhHHHHHHHHHHHHHhCCCcEEEEEeccC-----chhHHhhcCCCCC
Q 017971          253 PLSVPINQDTLNLLKDDKRKIVLAIVEDE--TEEKSQKLVTTLKAAASANRELVFCYVGIKQ-----FADFADTFEANKK  325 (363)
Q Consensus       253 p~~~~lt~~~~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~-----~~~~~~~~gi~~~  325 (363)
                      |.+.+||.+|++....+.+.+++-|+..-  ..+ ...+.+..+.+++...++.++-||+.+     ++.++..+++ ..
T Consensus         2 ~g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck-~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i-~~   79 (122)
T d2c0ga2           2 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGEK-HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV-DD   79 (122)
T ss_dssp             TTCEECCTTTHHHHHTTSSEEEEEEEESSCCSHH-HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC-CT
T ss_pred             CceEEcChHhHHHHHhcCCcEEEEEECCCCCccc-CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhc-cc
Confidence            34679999999998887777777777542  222 233334444444455669999999864     4779999999 44


Q ss_pred             CCCCeEEEEeCCCC---eeEEEEEEeehhhhhHhhh
Q 017971          326 SKLPKMVVWDGNEN---YLTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       326 ~~~P~~vi~~~~~~---y~~~~~~~~~~~~~~~~~~  358 (363)
                      .++|++.++.+++.   .+..+++.+.+.+..|+..
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~  115 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSA  115 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHH
Confidence            68999999988742   3445677788888888764

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00026  Score=55.09  Aligned_cols=65  Identities=14%  Similarity=0.147  Sum_probs=47.6

Q ss_pred             cCCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017971           28 GRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA  103 (363)
Q Consensus        28 ~~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~  103 (363)
                      ..|..+|+....+.++..+.|++-       .++++++.|| +.||+.|....|.+.+.+.++.    ++.+..|..
T Consensus        19 ~vG~~APdF~L~~~~g~~vsLsd~-------~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~   84 (164)
T d1qxha_          19 QAGSKAQTFTLVAKDLSDVTLGQF-------AGKRKVLNIFPSIDTGVCAASVRKFNQLATEID----NTVVLCISA   84 (164)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGG-------TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST----TEEEEEEES
T ss_pred             CCCCCCCCeEEECCCCCEEeHHHh-------CCCeEEEEEecchhcccchHHHHHHHHHHHhhc----cceeeeEEc
Confidence            346667777777778888877653       5678888888 6799999999999998876543    255555543

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.48  E-value=0.00017  Score=56.79  Aligned_cols=32  Identities=22%  Similarity=0.598  Sum_probs=27.8

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhh
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILA   90 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~   90 (363)
                      ..++.+|+|.+..|+||+++.+.+.++.+.+.
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~   48 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLP   48 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSC
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcc
Confidence            44789999999999999999999999887654

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.45  E-value=0.00035  Score=54.67  Aligned_cols=86  Identities=10%  Similarity=0.087  Sum_probs=58.0

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      ..+++++.|| +.||+.|....+.+.+..+.+++.+  +.+..|..+.                            +.++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v  109 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSI  109 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHH
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC--eeEecccccchhhHHHHHhhhhhcccccCcccccccccccHH
Confidence            3457888899 8999999999999999999887664  6666666432                            3467


Q ss_pred             hhhCCcC-----cCCEEEEEeC-CEEE--eec---CCCCHHHHHHHHH
Q 017971          110 ASKQEID-----AFPTLKIFMH-GIPT--EYY---GPRKAELLVRYLK  146 (363)
Q Consensus       110 ~~~~~i~-----~~Pt~~~~~~-g~~~--~y~---g~~~~~~i~~~i~  146 (363)
                      ++.||+.     ..|+.++... |...  .+.   -.+..+++.+.+.
T Consensus       110 ~~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~  157 (170)
T d1zofa1         110 SRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVD  157 (170)
T ss_dssp             HHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHH
T ss_pred             HHHcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHH
Confidence            7888873     4566777754 5432  121   1345666665543

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.43  E-value=0.00015  Score=56.67  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=49.8

Q ss_pred             CCCeEEEEEECC-CChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc-------------------------cchhhhhh
Q 017971           59 SFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-------------------------KYSRLASK  112 (363)
Q Consensus        59 ~~~~~lv~fy~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-------------------------~~~~l~~~  112 (363)
                      .++.++|.||.. ||+.|....+.+.+..+++++.+  +.+..|.++                         .+.+++++
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g--~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~  107 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQ  107 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHH
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc--eEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHH
Confidence            567899999966 99999999999999999998764  666656554                         23457777


Q ss_pred             CCcC------cCCEEEEEeCC
Q 017971          113 QEID------AFPTLKIFMHG  127 (363)
Q Consensus       113 ~~i~------~~Pt~~~~~~g  127 (363)
                      ||+.      ..|+.++....
T Consensus       108 ygv~~~~~~~~~r~tfvID~~  128 (166)
T d1we0a1         108 FDVLNEETGLADRGTFIIDPD  128 (166)
T ss_dssp             TTCEETTTTEECEEEEEECTT
T ss_pred             hCCCccccCcccceEEEECCC
Confidence            8764      35666666543

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.0002  Score=53.86  Aligned_cols=65  Identities=17%  Similarity=0.253  Sum_probs=54.5

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCC
Q 017971          272 KIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN  339 (363)
Q Consensus       272 ~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~  339 (363)
                      ..+++-|...-....+.+...+.++|.++++ +.|+.||.++.+.+++.|++   ...|+++++..++.
T Consensus        23 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I---~~~PT~~~f~~g~~   88 (137)
T d1qgva_          23 RVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL---YDPCTVMFFFRNKH   88 (137)
T ss_dssp             SEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCS---CSSCEEEEEETTEE
T ss_pred             CEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCe---eeEEEEEEEeCCcE
Confidence            3444444456788889999999999999998 99999999999999999999   68999999976543

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=0.00092  Score=51.08  Aligned_cols=68  Identities=15%  Similarity=0.194  Sum_probs=47.6

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEE-ECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDF-YAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~f-y~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      .|..+|+....+.++..+.|++-      ...+++++.| ++.||+.|....+.+.+..+++.+.  ++.+..+..+
T Consensus         4 vG~~aPdF~l~d~~G~~~slsd~------~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~--~~~vi~vs~d   72 (153)
T d1xvwa1           4 VGATAPDFTLRDQNQQLVTLRGY------RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND--DSAALAISVG   72 (153)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGG------TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS--SEEEEEEESC
T ss_pred             CcCCCcCeEEECCCCCEEeHHHH------cCCCcEEEEecccccccchhhhhhhhhhhhhhhccc--ccccccccch
Confidence            35567777777778877777643      2334555554 4889999999999998888777544  3777766654

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.35  E-value=0.00012  Score=50.16  Aligned_cols=75  Identities=8%  Similarity=0.014  Sum_probs=60.6

Q ss_pred             CCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehhhhhHhhh
Q 017971          280 DETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       280 ~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~  358 (363)
                      .......+++...+.+++.++++ +.|+.+|.++++++++.||+   ...|++++ ++.++   ..|....+++++|+.+
T Consensus        10 a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V---~~~Pt~~~-~~~~~---~~G~~~~~~l~~~i~~   82 (85)
T d1nhoa_          10 SPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGL---MAVPAIAI-NGVVR---FVGAPSREELFEAIND   82 (85)
T ss_dssp             CSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCS---SCSSEEEE-TTTEE---EECSSCCHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCc---eEeCEEEE-CCcEE---EEcCCCHHHHHHHHHH
Confidence            34455556778888999999887 99999999999999999999   68999865 55554   3578889999999988


Q ss_pred             hhc
Q 017971          359 LLQ  361 (363)
Q Consensus       359 ~~~  361 (363)
                      -|+
T Consensus        83 ~l~   85 (85)
T d1nhoa_          83 EME   85 (85)
T ss_dssp             HCC
T ss_pred             hhC
Confidence            764

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.34  E-value=0.00052  Score=45.41  Aligned_cols=72  Identities=21%  Similarity=0.395  Sum_probs=55.0

Q ss_pred             EEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCC-CCHHHHHH
Q 017971           65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGP-RKAELLVR  143 (363)
Q Consensus        65 v~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~-~~~~~i~~  143 (363)
                      |....+.|..|.++....++++.++   +-...+.++  ++-+++. +|||-++|.+.+  +|+ +.+.|. .+.++|.+
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~---gi~a~v~kv--~d~~ei~-~ygVmstPalvI--dg~-vv~~G~vPs~~ei~~   74 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKEL---GIDAEFEKI--KEMDQIL-EAGLTALPGLAV--DGE-LKIMGRVASKEEIKK   74 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHT---TCCEEEEEE--CSHHHHH-HHTCSSSSCEEE--TTE-EEECSSCCCHHHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHc---CCceEEEEe--CCHHHHH-HcCCcCCCEEEE--CCE-EEEEecCCCHHHHHH
Confidence            5566899999999999999998775   223566555  4666665 699999999986  554 456675 58999998


Q ss_pred             HH
Q 017971          144 YL  145 (363)
Q Consensus       144 ~i  145 (363)
                      |+
T Consensus        75 ~L   76 (77)
T d1iloa_          75 IL   76 (77)
T ss_dssp             HC
T ss_pred             Hh
Confidence            86

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=4.9e-05  Score=56.21  Aligned_cols=100  Identities=11%  Similarity=0.156  Sum_probs=69.3

Q ss_pred             cccCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---C-----cEEEEEeccCchhHHhhcCCCCCC
Q 017971          255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---E-----LVFCYVGIKQFADFADTFEANKKS  326 (363)
Q Consensus       255 ~~~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~---~-----~~f~~vd~~~~~~~~~~~gi~~~~  326 (363)
                      +.+||.+|+..+...++.+++.|+..-.-...   ...++++|+.+.   +     +.++.+|+..++.++..+++ ...
T Consensus         6 ~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~---~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~-~I~   81 (122)
T d1g7ea_           6 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK---QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL-DKE   81 (122)
T ss_dssp             SCSCSHHHHHHHGGGSSEEEEEEECSSCCTTT---THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTC-SSS
T ss_pred             eEECCHHhHHHHHhhCCeEEEEEecCCcCccc---CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcc-ccc
Confidence            56899999999888777777777543211111   123344444332   2     44555677778889998887 447


Q ss_pred             CCCeEEEEeCCC--CeeEEEEEEeehhhhhHhhh
Q 017971          327 KLPKMVVWDGNE--NYLTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       327 ~~P~~vi~~~~~--~y~~~~~~~~~~~~~~~~~~  358 (363)
                      ++|++.++...+  .....++..+.+.+..|+.+
T Consensus        82 ~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~  115 (122)
T d1g7ea_          82 SYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKG  115 (122)
T ss_dssp             SCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHT
T ss_pred             CCCeEEEEecCcccCceecCCCCCHHHHHHHHHh
Confidence            899999998753  45577899999999999864

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.23  E-value=0.00068  Score=52.26  Aligned_cols=86  Identities=16%  Similarity=0.200  Sum_probs=57.7

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----------------------------cchhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------------------KYSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l  109 (363)
                      .++++++.|| +.||+.|....+.+.+...++.+.+  +.+..|..+                            .+.++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~--~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~  102 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI  102 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC--ceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHH
Confidence            4578999999 8899999999999999999888765  444444432                            23457


Q ss_pred             hhhCCcCc------CCEEEEEe-CCEEEe---e--cCCCCHHHHHHHHH
Q 017971          110 ASKQEIDA------FPTLKIFM-HGIPTE---Y--YGPRKAELLVRYLK  146 (363)
Q Consensus       110 ~~~~~i~~------~Pt~~~~~-~g~~~~---y--~g~~~~~~i~~~i~  146 (363)
                      ++.|++..      .|+.++.. +|....   +  .-.+..+++.+.+.
T Consensus       103 ~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lk  151 (158)
T d1zyea1         103 SRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVK  151 (158)
T ss_dssp             HHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            78888753      34556664 454321   2  12356677777665

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.20  E-value=0.00064  Score=44.98  Aligned_cols=66  Identities=17%  Similarity=0.226  Sum_probs=45.9

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhh---hhhCCcCcCCEEEEEeCCEEEeecCCCCHHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL---ASKQEIDAFPTLKIFMHGIPTEYYGPRKAEL  140 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l---~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~  140 (363)
                      ++.|..+||++|.+....+++.       +  +.+-.+|.+++++.   .+..|.+++|++++  +|+.+   |...++.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~-------~--i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~~i---gGf~~d~   68 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA-------G--LAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEHW---SGFRPER   68 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEEE---ESCCHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc-------C--CceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCEEE---eCCCHhH
Confidence            5678899999999887766542       2  67777888877554   46678999998754  67544   3334555


Q ss_pred             HHH
Q 017971          141 LVR  143 (363)
Q Consensus       141 i~~  143 (363)
                      |.+
T Consensus        69 l~~   71 (74)
T d1r7ha_          69 IKQ   71 (74)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00016  Score=57.51  Aligned_cols=43  Identities=21%  Similarity=0.415  Sum_probs=30.1

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEe
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD  102 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd  102 (363)
                      +.+.+|+|++-.|+||++++|.+..+.+..+.....+.+....
T Consensus        18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~   60 (188)
T d1fvka_          18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYH   60 (188)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEE
T ss_pred             CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEe
Confidence            4578999999999999999998766555434333345555443

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0024  Score=48.71  Aligned_cols=105  Identities=8%  Similarity=0.105  Sum_probs=67.9

Q ss_pred             cCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCCh-hhhhHHHHHHHHHHHhhcCCC--CeEEEEEeCccc---------
Q 017971           39 FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCG-HCKRLAPQLDEAAPILAKLKE--PIVIAKVDADKY---------  106 (363)
Q Consensus        39 ~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~-~C~~~~~~~~~~a~~~~~~~~--~v~~~~vd~~~~---------  106 (363)
                      .+.++..+.+++  |     +++++||.|+.+||+ .|....+.+.++.+.+.....  .+.+..+..+..         
T Consensus         6 ~d~~G~~vsl~d--~-----~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1wp0a1           6 TTHTGERKTDKD--Y-----LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN   78 (160)
T ss_dssp             EETTSCEEEGGG--G-----TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHH
T ss_pred             EcCCCCEEcHHH--h-----CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHH
Confidence            344555555554  3     679999999999995 698899999988887665432  344443432211         


Q ss_pred             -------------------hhhhhhCCcC---------------cCCEEEEEe-CCEEEe-ecCCCCHHHHHHHHHhhcC
Q 017971          107 -------------------SRLASKQEID---------------AFPTLKIFM-HGIPTE-YYGPRKAELLVRYLKKFVA  150 (363)
Q Consensus       107 -------------------~~l~~~~~i~---------------~~Pt~~~~~-~g~~~~-y~g~~~~~~i~~~i~~~~~  150 (363)
                                         ..+...|++.               ..++++++. +|+.+. |.+..++++|.+-|.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          79 YVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                               1234444432               345677774 567665 6778888888888877654

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.02  E-value=0.00033  Score=47.83  Aligned_cols=80  Identities=10%  Similarity=0.122  Sum_probs=60.1

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhCCC-cEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCCeeEEEEEEeehh
Q 017971          273 IVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVSINVLKTR  351 (363)
Q Consensus       273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~y~~~~~~~~~~~  351 (363)
                      .+++|+ ..-....+.+...+.+++..+++ +.+..+|.++++++++.+|+   ...|++++ +.+|++   .|....++
T Consensus         5 ~v~~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V---~~~Pt~~i-~~~g~~---~G~~~~~~   76 (85)
T d1fo5a_           5 KIELFT-SPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGI---MAVPTIVI-NGDVEF---IGAPTKEA   76 (85)
T ss_dssp             EEEEEE-CCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTT---CCSSEEEE-TTEEEC---CSSSSSHH
T ss_pred             EEEEEE-CCCCcChHhhhhhccccccccccccccccccccccccccccCCc---eEeeEEEE-ECCcEE---ECCCCHHH
Confidence            344444 33444455677888889999887 88999999999999999999   78999865 555654   36678888


Q ss_pred             hhhHhhhhh
Q 017971          352 VCFFMLTLL  360 (363)
Q Consensus       352 ~~~~~~~~~  360 (363)
                      ++.|+.+.|
T Consensus        77 l~~~i~~~L   85 (85)
T d1fo5a_          77 LVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            988887754

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.00  E-value=0.0017  Score=42.82  Aligned_cols=71  Identities=21%  Similarity=0.217  Sum_probs=49.9

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCcCcCCEEEEEeCCEEEeecCCCCHHHHHH
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVR  143 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~i~~  143 (363)
                      +..|..++|+.|......+.+   .     ..+.+-.+|.++++++.++|+.+ +|.+.+ .++....  -+.+.+.+.+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~---~-----~~~~~~~vdI~~d~~l~~~y~~~-IPVl~~-~~~~~l~--w~fd~~~l~~   69 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ---A-----RAGAFFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD--WPFDAPRLRA   69 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH---T-----TCCCEEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE--SCCCHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh---c-----cCCcEEEEEccCCHHHHHHhCCe-eeEEEE-CCeeEEc--CccCHHHHHH
Confidence            678899999999876544322   1     12778999999999999999976 897652 3333222  3457777777


Q ss_pred             HHH
Q 017971          144 YLK  146 (363)
Q Consensus       144 ~i~  146 (363)
                      |+.
T Consensus        70 ~L~   72 (75)
T d1ttza_          70 WLD   72 (75)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.99  E-value=0.0016  Score=51.48  Aligned_cols=110  Identities=20%  Similarity=0.125  Sum_probs=70.3

Q ss_pred             CCCccccccC-CCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----
Q 017971           31 LSSEEETKFK-IDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----  104 (363)
Q Consensus        31 ~~~~~~~~~~-~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----  104 (363)
                      ..+|+...+. .++...+++-++|     .++.+++.|| +.||+.|....+.+.+..+++.+.+  +.+..|.++    
T Consensus         5 ~~aP~F~~~a~~~g~~~~vsLsd~-----kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~--~~v~gIS~Ds~~s   77 (186)
T d1n8ja_           5 TKIKPFKNQAFKNGEFIEVTEKDT-----EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDTHFT   77 (186)
T ss_dssp             CBCCCCEEEEEETTEEEEEEHHHH-----TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSCHHH
T ss_pred             CcCCCCEeeeeeCCeeEEEeHHHh-----CCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc--EEEEeccccCHHH
Confidence            3445544332 3555666666655     5578999999 7889999999999999999887654  555555443    


Q ss_pred             ---------------------cchhhhhhCCcC------cCCEEEEEeC-CEEE--e-ec--CCCCHHHHHHHHHh
Q 017971          105 ---------------------KYSRLASKQEID------AFPTLKIFMH-GIPT--E-YY--GPRKAELLVRYLKK  147 (363)
Q Consensus       105 ---------------------~~~~l~~~~~i~------~~Pt~~~~~~-g~~~--~-y~--g~~~~~~i~~~i~~  147 (363)
                                           .+.+++++||+.      ..|+.++... |...  . +.  -.+..+++.+-+..
T Consensus        78 h~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lka  153 (186)
T d1n8ja_          78 HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA  153 (186)
T ss_dssp             HHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHH
Confidence                                 334577778873      2466666644 4321  1 21  24677777666654

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.97  E-value=0.00075  Score=52.75  Aligned_cols=66  Identities=21%  Similarity=0.258  Sum_probs=52.2

Q ss_pred             CCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCCh-hhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCG-HCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        32 ~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~-~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      ..|+.+..+.++..+.+++-       .+++++|.|+.+||+ .|....+.+.++.+.+.+.+.++.+..|..+
T Consensus        10 ~~p~F~l~d~~G~~vsl~d~-------~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          10 EVEPFTFQNQDGKNVSLESL-------KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             ECCCCEEECTTSCEEETGGG-------TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             cCCCeEEEcCCCCEEcHHHh-------CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            34666667777777777553       568999999999996 7999999999999888766666877777664

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.0006  Score=45.41  Aligned_cols=56  Identities=9%  Similarity=0.209  Sum_probs=41.6

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhh---hhhCCcCcCCEEEEEeCCEEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL---ASKQEIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l---~~~~~i~~~Pt~~~~~~g~~~  130 (363)
                      ++.|..+||++|.+....+.+.       +  +.+-.+|.+++++.   .+..|.+++|.+++  +|+.+
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~-------~--i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~i   61 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR-------G--FDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLSW   61 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc-------C--ceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence            5678889999999887776542       2  77788899887754   34568999999875  56443

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=96.72  E-value=0.0044  Score=48.07  Aligned_cols=87  Identities=15%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~l  109 (363)
                      ..++++|.|| +.||+.|......+.+..+.+++.+  +.+..|.++.                            +..+
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g--~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~  103 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSI  103 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC--eeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHH
Confidence            3478899999 7999999999999999999988764  7777777652                            2467


Q ss_pred             hhhCCcC-----cCCEEEEEeCCEEEe--ec----CCCCHHHHHHHHHh
Q 017971          110 ASKQEID-----AFPTLKIFMHGIPTE--YY----GPRKAELLVRYLKK  147 (363)
Q Consensus       110 ~~~~~i~-----~~Pt~~~~~~g~~~~--y~----g~~~~~~i~~~i~~  147 (363)
                      ++.||+.     ..++.++...+..+.  +.    -.+..+++.+.+..
T Consensus       104 ~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~  152 (170)
T d2h01a1         104 ARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA  152 (170)
T ss_dssp             HHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred             HHHhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence            7778773     235666664433332  21    23456667666644

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=96.70  E-value=0.0018  Score=50.04  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=53.2

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc-
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-  106 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-  106 (363)
                      .|..+|+....+.+...+.|++-       .++++++.||. .||+.|....+.+.+...++++    +.+..|.++.. 
T Consensus        18 vG~~APdF~L~d~~g~~v~Lsd~-------~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~----~~vi~iS~d~~~   86 (164)
T d1q98a_          18 VGEIVENFILVGNDLADVALNDF-------ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN----TIVLCISADLPF   86 (164)
T ss_dssp             TTCBCCCCEEECTTSCEEEGGGG-------TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT----EEEEEEESSCHH
T ss_pred             CCCCCCCcEEECCCCCEEeehhh-------CCcEEEEEecCccccCcccHHHHHHHHHHHHhcc----ceEEeecCCcHH
Confidence            45566666666666776666543       45788888995 5788899999999998877742    67777776532 


Q ss_pred             --hhhhhhCCcCcC
Q 017971          107 --SRLASKQEIDAF  118 (363)
Q Consensus       107 --~~l~~~~~i~~~  118 (363)
                        ...++++++...
T Consensus        87 ~~~~~~~~~~~~~~  100 (164)
T d1q98a_          87 AQARFCGAEGIENA  100 (164)
T ss_dssp             HHTTCTTTTTCTTE
T ss_pred             HHHHHHHHhCCccc
Confidence              334444444433

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.001  Score=45.33  Aligned_cols=74  Identities=15%  Similarity=0.154  Sum_probs=51.5

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhh----hh--CCcCcCCEEEEEeCCEEEeecCCCC
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA----SK--QEIDAFPTLKIFMHGIPTEYYGPRK  137 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~----~~--~~i~~~Pt~~~~~~g~~~~y~g~~~  137 (363)
                      +|.|..++|++|.+....+.+.....++    +.+-.+|.+.+++..    +.  .+++.+|++++  +|+.+   |.. 
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~~I---GG~-   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD----FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQHI---GGY-   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS----CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTEEE---ESS-
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC----ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCEEE---ECH-
Confidence            5778999999999999999998776653    777888876554332    22  24568999765  77644   333 


Q ss_pred             HHHHHHHHHhh
Q 017971          138 AELLVRYLKKF  148 (363)
Q Consensus       138 ~~~i~~~i~~~  148 (363)
                       +++.+++++.
T Consensus        73 -~el~~~~~~~   82 (85)
T d1egoa_          73 -TDFAAWVKEN   82 (85)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHhc
Confidence             4566666654

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.016  Score=41.50  Aligned_cols=96  Identities=10%  Similarity=0.106  Sum_probs=62.7

Q ss_pred             ceecCChHHHHHHHHhcCCcccEEEeecCCh-hHHHHHHHHhhhhhHH----------H----HhhhcchhhhhhcCCCC
Q 017971          153 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE-SVMSNLALKYKKKAWF----------A----VAKDFSEDTMVLYDFDK  217 (363)
Q Consensus       153 v~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~a~~~~~~~~~----------~----~~~~~~~~~~~~~~~~~  217 (363)
                      ...|++.++++..+...+.. +++|.|+..+ ..++.+...+.....+          .    .......+++..|++.+
T Consensus         4 f~~i~~~~~~~~~l~~~~gK-~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~   82 (117)
T d2fwha1           4 FTQIKTVDELNQALVEAKGK-PVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG   82 (117)
T ss_dssp             CEECCSHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCS
T ss_pred             ceEecCHHHHHHHHHHcCCC-eEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhh
Confidence            45677888888888776643 6888777653 4455544333211110          0    00123456788999999


Q ss_pred             CCeEEEEcCCCCCcc--cccCCCCHHHHHHHHHh
Q 017971          218 VPALVALQPSYNEHN--IFYGPFDEEFLEEFIKQ  249 (363)
Q Consensus       218 ~p~iv~~~~~~~~~~--~~~g~~~~~~l~~fi~~  249 (363)
                      +|+++++.++++...  .+.|..+.+++.+|+++
T Consensus        83 ~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          83 LPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             SSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            999999976543332  45689999999999986

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.013  Score=47.27  Aligned_cols=110  Identities=14%  Similarity=0.126  Sum_probs=70.4

Q ss_pred             CCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----
Q 017971           30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----  104 (363)
Q Consensus        30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----  104 (363)
                      |..+|+....+.++. +.|     .+.+ .++.+++.|| +.||+.|......+.+..+++++.+  +.+..+.++    
T Consensus         4 Gd~APdF~l~~~~G~-v~L-----sd~~-g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g--~~v~giS~Ds~~s   74 (220)
T d1prxa_           4 GDVAPNFEANTTVGR-IRF-----HDFL-GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSVED   74 (220)
T ss_dssp             TCBCCCCEEEETTEE-EEH-----HHHH-TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHHH
T ss_pred             CCCCCCcEeecCCCC-EEe-----HHHc-CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc--ceeeccccccccc
Confidence            445666666555553 233     2222 4467788888 6799999999999999999998765  555555432    


Q ss_pred             ---------------------------cchhhhhhCCcC------------cCCEEEEEeCCEEEe----ec--CCCCHH
Q 017971          105 ---------------------------KYSRLASKQEID------------AFPTLKIFMHGIPTE----YY--GPRKAE  139 (363)
Q Consensus       105 ---------------------------~~~~l~~~~~i~------------~~Pt~~~~~~g~~~~----y~--g~~~~~  139 (363)
                                                 .+.++++.||+-            ..++.++......++    |.  -.|+.+
T Consensus        75 h~~~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~d  154 (220)
T d1prxa_          75 HLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFD  154 (220)
T ss_dssp             HHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHH
T ss_pred             hhhhhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchH
Confidence                                       345788888874            346677775443332    22  246778


Q ss_pred             HHHHHHHhh
Q 017971          140 LLVRYLKKF  148 (363)
Q Consensus       140 ~i~~~i~~~  148 (363)
                      ++.+-+...
T Consensus       155 EiLr~l~al  163 (220)
T d1prxa_         155 EILRVVISL  163 (220)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777765443

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0022  Score=50.45  Aligned_cols=45  Identities=18%  Similarity=0.172  Sum_probs=39.4

Q ss_pred             CCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCcc
Q 017971           59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK  105 (363)
Q Consensus        59 ~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~  105 (363)
                      +++++||.++|+||+.|.+..|.++++.+++++.+  +.+..+-|.+
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g--~~Il~fP~nq   67 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQ   67 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCC
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc--eeEEEeeccc
Confidence            77999999999999999999999999999987654  7777787754

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.52  E-value=0.0012  Score=46.98  Aligned_cols=70  Identities=17%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             HHHhHcCCCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh-----hhhhCCcCcCCEEEEEeCC
Q 017971           53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR-----LASKQEIDAFPTLKIFMHG  127 (363)
Q Consensus        53 f~~~l~~~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-----l~~~~~i~~~Pt~~~~~~g  127 (363)
                      .++.+++++  +|.|..+||++|++....+.+...    ....+.+..+|...+..     +.+..+.+.+|++++  +|
T Consensus         5 v~~~i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~----~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g   76 (105)
T d1ktea_           5 VNSKIQPGK--VVVFIKPTCPFCRKTQELLSQLPF----KEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GK   76 (105)
T ss_dssp             HHHHCCTTC--EEEEECSSCHHHHHHHHHHHHSCB----CTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TT
T ss_pred             HHHHhccCC--EEEEECCCCchHHHHHHHHHHhCC----ccceeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CC
Confidence            445555555  667999999999999887776432    12236677777665543     223346788999864  77


Q ss_pred             EEE
Q 017971          128 IPT  130 (363)
Q Consensus       128 ~~~  130 (363)
                      +.+
T Consensus        77 ~~I   79 (105)
T d1ktea_          77 ECI   79 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.42  E-value=0.0025  Score=42.94  Aligned_cols=56  Identities=11%  Similarity=0.188  Sum_probs=40.1

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhh----hhhCCcCcCCEEEEEeCCEEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL----ASKQEIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~g~~~  130 (363)
                      +..|..+||++|++....+++.       +  +.+..+|++++++.    .+..|.+.+|.++  .+|+.+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~-------~--i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~--i~~~~I   62 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK-------G--VSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI   62 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------T--CCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc-------C--CCeEEEeccchHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence            4568889999999887766542       1  66788888877554    4445888999975  466644

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0054  Score=48.75  Aligned_cols=88  Identities=19%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----------------------------cchhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------------------KYSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l  109 (363)
                      .++.+++.|| ..||+.|......+.+..++++..+  +.+..|.++                            .+.++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~v  110 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG--CEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRL  110 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHH
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhccCC--cEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHH
Confidence            4578888899 8999999999999999999988654  666666653                            23457


Q ss_pred             hhhCCcC------cCCEEEEEeCCEEEe----ecC--CCCHHHHHHHHHhh
Q 017971          110 ASKQEID------AFPTLKIFMHGIPTE----YYG--PRKAELLVRYLKKF  148 (363)
Q Consensus       110 ~~~~~i~------~~Pt~~~~~~g~~~~----y~g--~~~~~~i~~~i~~~  148 (363)
                      ++.||+.      .+|+.++......++    |.-  .+..+++.+.++..
T Consensus       111 a~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         111 SEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            7778774      356666665433332    322  46777777776544

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.40  E-value=0.0035  Score=48.27  Aligned_cols=65  Identities=15%  Similarity=0.083  Sum_probs=46.0

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD  104 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~  104 (363)
                      .|..+|+....+.++..+.|++-       .+++++|.|| +.||+.|....+.+.+...+++    ++.+..|..+
T Consensus        18 vG~~aPdF~L~~~~g~~vsLsd~-------~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~d   83 (163)
T d1psqa_          18 VGDKALDFSLTTTDLSKKSLADF-------DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD----NTVVLTVSMD   83 (163)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGG-------TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT----TEEEEEEESS
T ss_pred             CCCCCCCeEEECCCCCEEehHHh-------CCcEEEEEeccccccccchhhHHHHHHHHHhhc----ccceEEEEec
Confidence            35566777777777777777552       5578888888 6799999999888877655443    3666666543

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.32  E-value=0.006  Score=47.06  Aligned_cols=66  Identities=21%  Similarity=0.141  Sum_probs=44.3

Q ss_pred             CCCCCccccccCCCCCeEEcChhhHHHhHcCCCeEEEEEEC-CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 017971           29 RGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY  106 (363)
Q Consensus        29 ~~~~~~~~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~  106 (363)
                      .|..+|+....+.++..+.|++  |     .++++++.||. .||+.|....+.+.+..+..   +  +.+..|..+..
T Consensus        19 iG~~aP~F~L~~~~g~~v~L~d--~-----~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~---g--~~vv~Is~d~~   85 (166)
T d1xvqa_          19 VGSPAPAFTLTGGDLGVISSDQ--F-----RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS---G--ATVLCVSKDLP   85 (166)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGG--G-----TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT---T--CEEEEEESSCH
T ss_pred             CcCCCCCeEEECCCCCEEehHH--h-----CCcEEEEEeeecccccccHHHHHHHhhhcccc---c--ccccccccchH
Confidence            3556677777777777777654  2     55788999994 57888999888887765543   2  45555554443

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.01  Score=42.92  Aligned_cols=68  Identities=12%  Similarity=0.243  Sum_probs=51.2

Q ss_pred             CCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHhCCC-cEEEEEeccC-------chhHHhhcCCCCCCCCCeEEEE
Q 017971          269 DKRKIVLAIVEDE------TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ-------FADFADTFEANKKSKLPKMVVW  334 (363)
Q Consensus       269 ~~~~~~i~~~~~~------~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~-------~~~~~~~~gi~~~~~~P~~vi~  334 (363)
                      .++++++.|..+.      =....+.+...+.++++.+++ +.|+.||..+       +..+.+.+++   ...|+++++
T Consensus        20 ~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V---~~iPT~i~~   96 (119)
T d1woua_          20 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKV---TAVPTLLKY   96 (119)
T ss_dssp             TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCC---CSSSEEEET
T ss_pred             CCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCe---EEEEEEEEE
Confidence            3456666666432      145568899999999999887 9999999753       3458888999   789999999


Q ss_pred             eCCCC
Q 017971          335 DGNEN  339 (363)
Q Consensus       335 ~~~~~  339 (363)
                      +..++
T Consensus        97 ~~g~~  101 (119)
T d1woua_          97 GTPQK  101 (119)
T ss_dssp             TSSCE
T ss_pred             ECCeE
Confidence            86653

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=95.87  E-value=0.009  Score=39.09  Aligned_cols=56  Identities=14%  Similarity=0.256  Sum_probs=39.0

Q ss_pred             EEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchh---hhhhCCcCcCCEEEEEeCCEEE
Q 017971           64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR---LASKQEIDAFPTLKIFMHGIPT  130 (363)
Q Consensus        64 lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~Pt~~~~~~g~~~  130 (363)
                      ++.|..++|++|+++...+++.       +  +.+-.+|.+++..   +.+..+...+|.+++  +|+.+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-------~--i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i--~g~~I   65 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-------G--LSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGKHI   65 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------T--CCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------C--CCeEEEEccCcHHHHHHHHHhCCccCCEEEE--CCEEE
Confidence            6778999999999988776653       1  5566677765533   344567889999754  66544

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.35  E-value=0.016  Score=46.72  Aligned_cols=81  Identities=17%  Similarity=0.378  Sum_probs=58.4

Q ss_pred             CCCcccCC-hhhHHh-hhcCCC--cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCC
Q 017971          252 LPLSVPIN-QDTLNL-LKDDKR--KIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK  327 (363)
Q Consensus       252 ~p~~~~lt-~~~~~~-l~~~~~--~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~  327 (363)
                      +..+.+++ .+.+.. +...+.  .+++.|+ .......+.+...|..+|.+|+++.|+.||+...+ ....|++   ..
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy-~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~-~~~~~~i---~~  172 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKEQKVTTIVVNIY-EDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-AGDRFSS---DV  172 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT-CSTTSCG---GG
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEE-cCCCCChhhhhhhHHHHhhhcccceEEEEccccch-hHHhCCC---CC
Confidence            34566675 455544 433333  3455455 45777888899999999999999999999998654 5567777   67


Q ss_pred             CCeEEEEeCC
Q 017971          328 LPKMVVWDGN  337 (363)
Q Consensus       328 ~P~~vi~~~~  337 (363)
                      +|++++|...
T Consensus       173 lPtl~~yk~G  182 (217)
T d2trcp_         173 LPTLLVYKGG  182 (217)
T ss_dssp             CSEEEEEETT
T ss_pred             CCeEEEEECC
Confidence            9999999775

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.56  E-value=0.21  Score=36.06  Aligned_cols=85  Identities=14%  Similarity=0.065  Sum_probs=53.4

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccC----c-------------------hhHHhhcCCCCCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ----F-------------------ADFADTFEANKKS  326 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~----~-------------------~~~~~~~gi~~~~  326 (363)
                      ++++++.|+.. -.....+....+.++++++++..++.+...+    .                   ..+.+.||+   .
T Consensus        25 Gk~vll~fwa~-wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v---~  100 (134)
T d1zzoa1          25 GKPAVLWFWAP-WCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGV---T  100 (134)
T ss_dssp             TSCEEEEEECT-TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTC---C
T ss_pred             CCEEEEEeccc-ccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCC---C
Confidence            45666666533 4455555566666666666664444443321    1                   134455555   5


Q ss_pred             CCCeEEEEeCCCCeeEEEEEEeehhhhhHhhh
Q 017971          327 KLPKMVVWDGNENYLTVSINVLKTRVCFFMLT  358 (363)
Q Consensus       327 ~~P~~vi~~~~~~y~~~~~~~~~~~~~~~~~~  358 (363)
                      ..|..+++|++|+.....+....+++...+..
T Consensus       101 ~~P~~~iiD~~G~i~~~~g~~~~~~l~~~i~~  132 (134)
T d1zzoa1         101 QQPAYAFVDPHGNVDVVRGRMSQDELTRRVTA  132 (134)
T ss_dssp             SSSEEEEECTTCCEEEEESCCCHHHHHHHHHH
T ss_pred             ccCeEEEECCCCeEEEEECCCCHHHHHHHHHh
Confidence            67999999999986667788888887777654

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.51  E-value=0.17  Score=37.80  Aligned_cols=46  Identities=11%  Similarity=0.022  Sum_probs=27.5

Q ss_pred             ccccCCCCCeEEcChhhHHHhHcCCCeEEEEEECCCChh-hhhHHHHHHHHHHH
Q 017971           36 ETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGH-CKRLAPQLDEAAPI   88 (363)
Q Consensus        36 ~~~~~~~~~v~~l~~~~f~~~l~~~~~~lv~fy~~~C~~-C~~~~~~~~~~a~~   88 (363)
                      ....+.+++.+.+.+-       ++++++|.||.+||+. |.........+.+.
T Consensus         9 F~l~d~~G~~vsl~~~-------~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~   55 (169)
T d2b7ka1           9 FHLEDMYGNEFTEKNL-------LGKFSIIYFGFSNCPDICPDELDKLGLWLNT   55 (169)
T ss_dssp             CEEEETTSCEEEGGGG-------TTSCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCEECHHHH-------CCCEEEEEEeccccCCcccchhhhhhhhhhh
Confidence            3344445554444433       6789999999999964 44444444444433

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=93.90  E-value=0.1  Score=41.66  Aligned_cols=88  Identities=17%  Similarity=0.173  Sum_probs=58.8

Q ss_pred             CCCeEEEEEE-CCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCc----------------------------cchhh
Q 017971           59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------------------KYSRL  109 (363)
Q Consensus        59 ~~~~~lv~fy-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l  109 (363)
                      +++.+++.|| +.||+.|......|.+...++++.+  +.+..+.++                            .+.++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~--~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~v  106 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESREL  106 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccc--eEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHH
Confidence            4578888888 7899999999999999999988764  555555543                            33468


Q ss_pred             hhhCCcCc------------CCEEEEEeCCEEEe----e--cCCCCHHHHHHHHHhh
Q 017971          110 ASKQEIDA------------FPTLKIFMHGIPTE----Y--YGPRKAELLVRYLKKF  148 (363)
Q Consensus       110 ~~~~~i~~------------~Pt~~~~~~g~~~~----y--~g~~~~~~i~~~i~~~  148 (363)
                      ++.||+-.            ..+.++......++    |  .-.+..+++.+-+...
T Consensus       107 a~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_         107 ANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  163 (219)
T ss_dssp             HHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHH
Confidence            88888721            23555555433332    3  2256777777776443

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.55  E-value=0.033  Score=39.39  Aligned_cols=67  Identities=16%  Similarity=0.260  Sum_probs=43.9

Q ss_pred             hhHHHhHcCCCeEEEEEE--C---CCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh----hCCcCcCCEE
Q 017971           51 SNFDSAISSFDYILVDFY--A---PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEIDAFPTL  121 (363)
Q Consensus        51 ~~f~~~l~~~~~~lv~fy--~---~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~----~~~i~~~Pt~  121 (363)
                      ...+.++++++.++  |-  +   |.|++|++....+.+       .+  +.+..+|.++++++.+    .-+-+.+|.+
T Consensus         6 ~~i~~~i~~~~Vvv--F~Kgt~~~p~Cp~c~~ak~lL~~-------~~--i~~~~~~v~~~~~~~~~l~~~t~~~TvPqI   74 (109)
T d1wika_           6 SGLKVLTNKASVML--FMKGNKQEAKCGFSKQILEILNS-------TG--VEYETFDILEDEEVRQGLKTFSNWPTYPQL   74 (109)
T ss_dssp             CCHHHHHTTSSEEE--EESSTTTCCCSSTHHHHHHHHHH-------TC--SCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHHhcCCEEE--EeCCCCCCCCChHHHHHHHHHHh-------cC--CCceEEEecccHHHHHHHHHhcCCCCCCeE
Confidence            45667777654443  53  2   889999988776653       22  6677788888765543    3467889998


Q ss_pred             EEEeCCEEE
Q 017971          122 KIFMHGIPT  130 (363)
Q Consensus       122 ~~~~~g~~~  130 (363)
                      ++  +|+.+
T Consensus        75 Fi--~g~~I   81 (109)
T d1wika_          75 YV--RGDLV   81 (109)
T ss_dssp             EC--SSSEE
T ss_pred             EE--CCEEE
Confidence            75  55444

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.15  E-value=0.43  Score=34.40  Aligned_cols=84  Identities=11%  Similarity=0.062  Sum_probs=51.5

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccC----------------------chhHHhhcCCCCCCC
Q 017971          270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ----------------------FADFADTFEANKKSK  327 (363)
Q Consensus       270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~----------------------~~~~~~~~gi~~~~~  327 (363)
                      ++++++.|+. .-..........+++++.+++++.++.++..+                      ...+.+.||+   ..
T Consensus        24 Gk~vll~F~a-~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v---~~   99 (134)
T d1lu4a_          24 GKPAVLWFWT-PWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNV---PW   99 (134)
T ss_dssp             TSCEEEEEEC-TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTC---CS
T ss_pred             CCEEEEEEee-cccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCC---Cc
Confidence            4677766663 35555566666777777777666666665432                      1235555666   56


Q ss_pred             CCeEEEEeCCCCee---EEEEEEeehhhhhHhh
Q 017971          328 LPKMVVWDGNENYL---TVSINVLKTRVCFFML  357 (363)
Q Consensus       328 ~P~~vi~~~~~~y~---~~~~~~~~~~~~~~~~  357 (363)
                      .|++++++++|+.-   ...+..+.+++..=+.
T Consensus       100 ~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~  132 (134)
T d1lu4a_         100 QPAFVFYRADGTSTFVNNPTAAMSQDELSGRVA  132 (134)
T ss_dssp             SSEEEEECTTSCEEEECCSSSCCCHHHHHHHHH
T ss_pred             CCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHH
Confidence            89999999998642   2334555555554443

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.87  E-value=0.42  Score=33.89  Aligned_cols=93  Identities=8%  Similarity=0.140  Sum_probs=64.5

Q ss_pred             hcCCCcEEEEEEeC-CChhhHHHHHHHHHHHHHhCCCcEEEEEeccC--chhHHhhcCCCCCCCCCeEEEEeCCCCe-eE
Q 017971          267 KDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRELVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDGNENY-LT  342 (363)
Q Consensus       267 ~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~--~~~~~~~~gi~~~~~~P~~vi~~~~~~y-~~  342 (363)
                      .+-.+|+-+.++.+ +..+..+++.+.++++|.-.+.+.+...|...  .+..++.+|+   ...|++++.+..+.| =.
T Consensus        18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~v---er~Ps~~i~~~g~~~gIr   94 (119)
T d1a8la1          18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRI---DRAPATTITQDGKDFGVR   94 (119)
T ss_dssp             GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTC---CSSSEEEEEETTBCCSEE
T ss_pred             HhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhcc---ccCceEEEecCCcccceE
Confidence            34456776666654 34456678888888888877678887776653  5678999999   568999999864222 24


Q ss_pred             EEEEEeehhhhhHhhhhhcC
Q 017971          343 VSINVLKTRVCFFMLTLLQF  362 (363)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~  362 (363)
                      +.|-=.=+++.-|+..+||.
T Consensus        95 F~GiP~GhEf~SlilaIl~v  114 (119)
T d1a8la1          95 YFGLPAGHEFAAFLEDIVDV  114 (119)
T ss_dssp             EESCCCTTHHHHHHHHHHHH
T ss_pred             EEeccCchhHHHHHHHHHHh
Confidence            44555557788888888764

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=92.45  E-value=0.04  Score=43.39  Aligned_cols=44  Identities=20%  Similarity=0.406  Sum_probs=31.6

Q ss_pred             CCeEEEEEECCCChhhhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017971           60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA  103 (363)
Q Consensus        60 ~~~~lv~fy~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~  103 (363)
                      +++.+++|++-+|+||.++.|.+..+.+..+....++.|..+..
T Consensus       113 ~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~  156 (195)
T d1un2a_         113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV  156 (195)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEEC
T ss_pred             CCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEec
Confidence            46889999999999999999987655443333344466665554

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.36  E-value=0.44  Score=35.88  Aligned_cols=83  Identities=14%  Similarity=0.093  Sum_probs=64.5

Q ss_pred             cCChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeC
Q 017971          257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG  336 (363)
Q Consensus       257 ~lt~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~  336 (363)
                      .++.+..+.+....++..++.+-..-..........|.+++..++++.+.+++.+.++..++.+........|.+++.+.
T Consensus        40 ~l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~  119 (166)
T d1z6na1          40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDE  119 (166)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECT
T ss_pred             cccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHHhccccccceeecCc
Confidence            45566677776656677667676667788888899999999999998999999988888888887633456799888887


Q ss_pred             CCC
Q 017971          337 NEN  339 (363)
Q Consensus       337 ~~~  339 (363)
                      .++
T Consensus       120 ~~~  122 (166)
T d1z6na1         120 EFN  122 (166)
T ss_dssp             TCC
T ss_pred             cch
Confidence            753

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.31  Score=36.09  Aligned_cols=89  Identities=11%  Similarity=0.078  Sum_probs=54.5

Q ss_pred             hhcCCCcEEEEEEeCCChhhHHHHH------HHHHHHHHhCCCcEEEEEeccC--chhHHhhcCCCCCCCCCeEEEEeCC
Q 017971          266 LKDDKRKIVLAIVEDETEEKSQKLV------TTLKAAASANRELVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDGN  337 (363)
Q Consensus       266 l~~~~~~~~i~~~~~~~~~~~~~~~------~~l~~~a~~~~~~~f~~vd~~~--~~~~~~~~gi~~~~~~P~~vi~~~~  337 (363)
                      -...++++++.|..+ .....+.+.      +.++++.++  ++.+..+|.+.  ...+.+.+++   ..+|+++++++.
T Consensus        38 Ak~~~K~llV~~~~~-~C~~C~~m~~~v~~d~~V~~~l~~--~fV~~~v~~~~~e~~~~~~~y~v---~~~Pti~~idp~  111 (147)
T d2dlxa1          38 GQMQNKWLMINIQNV-QDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKL---GDFPYVSILDPR  111 (147)
T ss_dssp             HHHHTCEEEEEEECS-CTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTC---CSSSEEEEECTT
T ss_pred             HHHcCCcEEEEEecC-CCCchHHHHHhccCCHHHHHHHhh--heeEeeecccchhhhhhhhheec---CceeEEEEEeCC
Confidence            445567777776643 444444443      223333332  37777777654  4678999999   579999999985


Q ss_pred             -CCeeEEEEEEeehhhhhHhhhhh
Q 017971          338 -ENYLTVSINVLKTRVCFFMLTLL  360 (363)
Q Consensus       338 -~~y~~~~~~~~~~~~~~~~~~~~  360 (363)
                       |+....-+.+..+++...+.+||
T Consensus       112 ~ge~v~~~~~~~~~~fl~~L~~fl  135 (147)
T d2dlxa1         112 TGQKLVEWHQLDVSSFLDQVTGFL  135 (147)
T ss_dssp             TCCCCEEESSCCHHHHHHHHHHHH
T ss_pred             CCeEecccCCCCHHHHHHHHHHHH
Confidence             65444445555566655555555

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.38  E-value=0.56  Score=33.79  Aligned_cols=40  Identities=15%  Similarity=0.252  Sum_probs=29.1

Q ss_pred             hHHhhcCCCCCCCCCeEEEEeCCCCe-eEEEEEEeehhhhhHhh
Q 017971          315 DFADTFEANKKSKLPKMVVWDGNENY-LTVSINVLKTRVCFFML  357 (363)
Q Consensus       315 ~~~~~~gi~~~~~~P~~vi~~~~~~y-~~~~~~~~~~~~~~~~~  357 (363)
                      .+.+.||+   ...|.++++|++|+. +...+.++...+..++.
T Consensus        93 ~~~~~~~v---~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~  133 (137)
T d1st9a_          93 QVLDAYDV---SPLPTTFLINPEGKVVKVVTGTMTESMIHDYMN  133 (137)
T ss_dssp             HHHHHTTC---CSSCEEEEECTTSEEEEEEESCCCHHHHHHHHH
T ss_pred             hhhhhhhc---cccceEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence            45666776   567999999999864 66777777776666543

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.07  E-value=0.33  Score=32.08  Aligned_cols=83  Identities=20%  Similarity=0.289  Sum_probs=58.1

Q ss_pred             HHHHHHHhcCCcccEEEeecCC----hhHHHHHHHHhhhhhHHHHhhhcchhhhhhcCCCCCCeEEEEcCCC-CCccccc
Q 017971          161 EVSDFVENAGTFFPLFIGFGLD----ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSY-NEHNIFY  235 (363)
Q Consensus       161 ~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv~~~~~~-~~~~~~~  235 (363)
                      +++.++.+..-..|+++.....    .+++.++|..+++.+.|.-.          .+-+..|.+-++-++. +++..|.
T Consensus         7 dl~~~l~n~t~v~pVVV~~Gv~d~~fNeTF~~~A~~l~~Dy~Fvs~----------~~~~~~~kLsV~LP~e~dEPIvf~   76 (98)
T d2b5ea2           7 DLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSA----------ENADDDFKLSIYLPSAMDEPVVYN   76 (98)
T ss_dssp             CHHHHHHHSCCSSCEEEEEESCCHHHHHHHHHHHHHTTTTCEEEEE----------ECTTSCCEEEEEETTEEEEEEECC
T ss_pred             hhHHHHhcCcccCCEEEeCCccccchhHHHHHHHHHhhcceEEEec----------cCCCCCccEEEECCCCCCCCeEEc
Confidence            4777887776434777776642    25688999988887655432          2233447788888864 4888999


Q ss_pred             CCC----CHHHHHHHHHhhcCC
Q 017971          236 GPF----DEEFLEEFIKQNFLP  253 (363)
Q Consensus       236 g~~----~~~~l~~fi~~~~~p  253 (363)
                      |..    +.+.+.+||+-.++|
T Consensus        77 G~~~~i~~a~~l~~WlkVe~lP   98 (98)
T d2b5ea2          77 GKKADIADADVFEKWLQVEALP   98 (98)
T ss_dssp             SCHHHHTSHHHHHHHHHHHSSC
T ss_pred             CccCCcccHHHHHHHHeeeccC
Confidence            853    678899999987776

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=87.73  E-value=2  Score=30.86  Aligned_cols=37  Identities=16%  Similarity=0.079  Sum_probs=24.1

Q ss_pred             HHhhcCCCCCCCCCeEEEEeCCCC-eeEEEEEEeehhhhhH
Q 017971          316 FADTFEANKKSKLPKMVVWDGNEN-YLTVSINVLKTRVCFF  355 (363)
Q Consensus       316 ~~~~~gi~~~~~~P~~vi~~~~~~-y~~~~~~~~~~~~~~~  355 (363)
                      +.+.|++   ...|+++++|++|+ .+...|....+.+..-
T Consensus       102 ~~~~~~v---~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~  139 (143)
T d2b5xa1         102 LTDAFEN---EYVPAYYVFDKTGQLRHFQAGGSGMKMLEKR  139 (143)
T ss_dssp             HHHHTCC---CCSSEEEEECTTCBEEEEEESCSTTHHHHHH
T ss_pred             hHHHcCC---CcCCEEEEECCCCEEEEEEECCCCHHHHHHH
Confidence            4455555   55799999999996 4455565555544443

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.08  E-value=0.77  Score=32.96  Aligned_cols=74  Identities=8%  Similarity=0.073  Sum_probs=47.4

Q ss_pred             HHhhhcCCCcEEEEEEeCCChhhHHHHHHHHH---HHHHhCCCcEEEEEeccCchhHHhhcCCCCCCCCCeEEEEeCCCC
Q 017971          263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLK---AAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN  339 (363)
Q Consensus       263 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~l~---~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~~vi~~~~~~  339 (363)
                      +......++|+++.|..+ -....+.+...+.   ++.+...++..+.+|.+..+...... . .....|++++++++|+
T Consensus        18 l~~A~~~~Kpvlv~F~a~-wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~-~-~~~~~Pt~~~~d~~G~   94 (135)
T d1sena_          18 KKEAAASGLPLMVIIHKS-WCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFS-P-DGGYIPRILFLDPSGK   94 (135)
T ss_dssp             HHHHHHHTCCEEEEEECT-TCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGC-T-TCSCSSEEEEECTTSC
T ss_pred             HHHHHHcCCcEEEEEEec-CCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHH-h-hcccceeEEEECCCCe
Confidence            444566778998888644 5555555555443   33333445888899987655444433 3 2356799999999875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=80.85  E-value=1.1  Score=32.40  Aligned_cols=46  Identities=11%  Similarity=0.124  Sum_probs=36.2

Q ss_pred             cchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh
Q 017971          205 FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN  250 (363)
Q Consensus       205 ~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g~~~~~~l~~fi~~~  250 (363)
                      .+..+...|++...|+.+++..++.....+.|..+.+++.+.|++.
T Consensus        94 ~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~  139 (144)
T d1knga_          94 ANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQ  139 (144)
T ss_dssp             TTSHHHHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred             ccchhhhhcCccccceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence            4566888999999999998876555555677999999988887653

>d1pzxa_ c.119.1.1 (A:) Hypothetical protein apc36103 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: DAK1/DegV-like
superfamily: DAK1/DegV-like
family: DegV-like
domain: Hypothetical protein apc36103
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.37  E-value=5.4  Score=32.52  Aligned_cols=105  Identities=9%  Similarity=0.085  Sum_probs=69.0

Q ss_pred             hcchhhhhhcCCCCCCeEEEEcCCCCCcccccC-CCCHHHHHHHHHhhcCCCcccCCh----hhHHhhhcCCCcEEEEEE
Q 017971          204 DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQNFLPLSVPINQ----DTLNLLKDDKRKIVLAIV  278 (363)
Q Consensus       204 ~~~~~~~~~~~~~~~p~iv~~~~~~~~~~~~~g-~~~~~~l~~fi~~~~~p~~~~lt~----~~~~~l~~~~~~~~i~~~  278 (363)
                      +..++..+++++.-.|--+.+.    +..+.+| +++.+++.+++++...|.-...+.    +.++.+...+..++++-+
T Consensus        12 dl~~~~~~~~~I~vvPl~i~~~----~~~y~D~~dis~eefy~~l~~~~~~~TS~ps~~~~~~~~~~~~~~~~~vi~i~i   87 (287)
T d1pzxa_          12 DLPQSYIREHRIAFLPLVVHWN----GQDYKDGITIEPKQVYDAMRQGHTVKTAQPSPLAMKELFLPYAKENRPCLYIAF   87 (287)
T ss_dssp             CCCHHHHHHTTCEEECCEEEET----TEEEEBTTTBCHHHHHHHHTTTCCCEEECCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCHHHHHHCCcEEEEEEEEEC----CEEEEcCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence            4567778889999888777773    2333444 678999999998876665555554    344455566677666555


Q ss_pred             eCCChhhHHHHHHHHHHHHHhCCCcEEEEEeccC
Q 017971          279 EDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ  312 (363)
Q Consensus       279 ~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~  312 (363)
                      ...-+..++.....-+.+..++++.++..+|...
T Consensus        88 Ss~LSgtyn~a~~aa~~~~~~~~~~~i~ViDS~~  121 (287)
T d1pzxa_          88 SSKLSGTYQTAMAVRSELLDEYPEFRLTIIDSKC  121 (287)
T ss_dssp             CTTTCSHHHHHHHHHHHHHHHSTTCCEEEEECCC
T ss_pred             CcccchHHHHHHHHHHHHHhhCCCceEEEEeCCc
Confidence            5545544554444444555677777788888875