Citrus Sinensis ID: 017974

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVSFLFNFDHIL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHcccccEEEEEcHHHHHHHHHHHcccHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHcccccHHHccccccccccccccccccEEEEcHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEccccccEEEEEEEcccccccccc
ccccccHHHEcccccccccccHHHEcEHHHccccccccEEEEccccEEccccEEcccHcccccccEEEccEEEEEcccHHHHHHHHccccEEEEEEcHHHHHHHHHHHccccccHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEccccHHHHHHHHHHccHHHHHHEccEccHHHHHHHHHccHHHHcccccHHHEEEEEEEcccHHHHHHccHHHHHHccccHcHHcccccccccccEEEEHHHHHHHHHHccccHHccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHccccccccEEEEEccccccEEEEEEccccHHHHHcc
msekfsptlrigdlsdfiapsqnCVVSLkkatfknpdkpqvstsskqqaepvkISLKdclacsgcitsAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASlaehfgisplQVFKKLTTFLKSLgvksifdtscsRDLTLIEACNEFIARYKqsqesddersnsslpmlssacpgwICYAEKqlgsyilpyissvkspqqtigATIKHHIcqklgfrpdeiyhvtvmpcydKKLEAAREDFVFQLDSqeetyrdegleipevdsvlttGEVLDLIQLKAVnfealeespldkmltnvddeghlygvagssggyaETVFRHAAKTLFGKVIEGhlefktirnsdFREVALEVSFLFNFDHIL
msekfsptlrigdlsdfiaPSQNCVVSLKKAtfknpdkpqvstsskqqaepvKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKqsqesddersnsSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQeetyrdegleipevdsvLTTGEVLDLIQLKAVNfealeespldKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVSFLFNFDHIL
MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVSFLFNFDHIL
**********IGDLSDFIAPSQNCVVSL************************KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY*******************SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVSFLFNFDH**
*****SP**RIGDLSDFIAPSQNCVVSLKKAT*********************ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIAR****************PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVSFLFNFDHIL
********LRIGDLSDFIAPSQNCVVSLKKAT********************KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY****************MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVSFLFNFDHIL
****FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD****NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY*DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVSFLFNFDHIL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVSFLFNFDHIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q5RF36 476 Cytosolic Fe-S cluster as yes no 0.922 0.703 0.440 1e-80
Q9H6Q4 476 Cytosolic Fe-S cluster as yes no 0.922 0.703 0.438 1e-80
Q5BK18 476 Cytosolic Fe-S cluster as yes no 0.917 0.699 0.443 2e-80
Q7TMW6 476 Cytosolic Fe-S cluster as yes no 0.917 0.699 0.449 7e-80
A4FV58 476 Cytosolic Fe-S cluster as yes no 0.917 0.699 0.435 3e-78
A8WH18 476 Cytosolic Fe-S cluster as yes no 0.922 0.703 0.440 4e-76
Q54F30 522 Probable cytosolic Fe-S c yes no 0.933 0.649 0.42 2e-75
A7SDA8441 Probable cytosolic Fe-S c N/A no 0.928 0.764 0.415 1e-71
A2RRV9 411 Cytosolic Fe-S cluster as no no 0.749 0.661 0.491 2e-70
Q16ML2 478 Probable cytosolic Fe-S c N/A no 0.911 0.692 0.380 8e-70
>sp|Q5RF36|NARFL_PONAB Cytosolic Fe-S cluster assembly factor NARFL OS=Pongo abelii GN=NARFL PE=2 SV=1 Back     alignment and function desciption
 Score =  300 bits (768), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 225/372 (60%), Gaps = 37/372 (9%)

Query: 1   MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
           M+  FS  L++ DL DFI PSQ C+  V ++K       K ++               ++
Sbjct: 1   MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRR 60

Query: 49  AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV--------IISLSPQS 100
            E  K+SL DCLACSGCITSAETV++ +QS +E    ++  K V        ++S+SPQS
Sbjct: 61  LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMVAPSQQRLVVVSVSPQS 120

Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
           RASLA  F ++P    +KLT+F K +GV  +FDT+ SR  +L+E+  EF+ R++   +  
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179

Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
                 +LP+L+SACPGWICYAEK  GS+ILP+IS+ +SPQQ +G+ +K    Q+    P
Sbjct: 180 ----KQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTP 235

Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
           D+IYHVTVMPCYDKKLEA+R DF     +QE   RD       VD VLTTGEV  L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEE 284

Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
            V+   LE +PLD + +    E       G SGGY E VFRHAA+ LFG +    + +K 
Sbjct: 285 GVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG-IHVAEVTYKP 343

Query: 341 IRNSDFREVALE 352
           +RN DF+EV LE
Sbjct: 344 LRNKDFQEVTLE 355
Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. Seems to negatively regulate the level of HIF1A expression, although this effect could be indirect.
Pongo abelii (taxid: 9601)
>sp|Q9H6Q4|NARFL_HUMAN Cytosolic Fe-S cluster assembly factor NARFL OS=Homo sapiens GN=NARFL PE=1 SV=1 Back     alignment and function description
>sp|Q5BK18|NARFL_RAT Cytosolic Fe-S cluster assembly factor NARFL OS=Rattus norvegicus GN=Narfl PE=2 SV=1 Back     alignment and function description
>sp|Q7TMW6|NARFL_MOUSE Cytosolic Fe-S cluster assembly factor NARFL OS=Mus musculus GN=Narfl PE=2 SV=2 Back     alignment and function description
>sp|A4FV58|NARFL_BOVIN Cytosolic Fe-S cluster assembly factor NARFL OS=Bos taurus GN=NARFL PE=2 SV=2 Back     alignment and function description
>sp|A8WH18|NARFL_XENTR Cytosolic Fe-S cluster assembly factor narfl OS=Xenopus tropicalis GN=narfl PE=2 SV=1 Back     alignment and function description
>sp|Q54F30|NARF_DICDI Probable cytosolic Fe-S cluster assembly factor narfl OS=Dictyostelium discoideum GN=narfl PE=3 SV=1 Back     alignment and function description
>sp|A7SDA8|NARF_NEMVE Probable cytosolic Fe-S cluster assembly factor v1g210509 OS=Nematostella vectensis GN=v1g210509 PE=3 SV=1 Back     alignment and function description
>sp|A2RRV9|NARFL_DANRE Cytosolic Fe-S cluster assembly factor narfl OS=Danio rerio GN=narfl PE=2 SV=1 Back     alignment and function description
>sp|Q16ML2|NARF_AEDAE Probable cytosolic Fe-S cluster assembly factor AAEL012261 OS=Aedes aegypti GN=AAEL012261 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
255563810 475 electron transporter, putative [Ricinus 0.966 0.738 0.807 1e-163
449443528 478 PREDICTED: cytosolic Fe-S cluster assemb 0.972 0.738 0.786 1e-162
224139480 471 predicted protein [Populus trichocarpa] 0.961 0.740 0.776 1e-160
224086530 478 predicted protein [Populus trichocarpa] 0.966 0.734 0.773 1e-160
359496948 478 PREDICTED: cytosolic Fe-S cluster assemb 0.972 0.738 0.755 1e-158
297800500 474 predicted protein [Arabidopsis lyrata su 0.958 0.734 0.764 1e-157
240255938 474 ferredoxin hydrogenase [Arabidopsis thal 0.961 0.736 0.749 1e-155
357467417 483 Cytosolic Fe-S cluster assembly factor N 0.972 0.730 0.733 1e-153
356522067 474 PREDICTED: cytosolic Fe-S cluster assemb 0.966 0.740 0.742 1e-153
16754852 479 Narf-like protein [Medicago truncatula] 0.972 0.736 0.733 1e-153
>gi|255563810|ref|XP_002522906.1| electron transporter, putative [Ricinus communis] gi|223537891|gb|EEF39506.1| electron transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 285/353 (80%), Positives = 312/353 (88%), Gaps = 2/353 (0%)

Query: 1   MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCL 60
           MSEKFSPTLRIGDLSDFIAPSQ CVVSLK     N  KP+V  S+KQQ+EPVKISLKDCL
Sbjct: 1   MSEKFSPTLRIGDLSDFIAPSQACVVSLKGLK-SNSKKPEVRVSNKQQSEPVKISLKDCL 59

Query: 61  ACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLT 120
           ACSGCITSAETVMLEKQSLDEFLSNI+KGKAV+ISLSPQSRASLA HF ISP QVFKKLT
Sbjct: 60  ACSGCITSAETVMLEKQSLDEFLSNIDKGKAVVISLSPQSRASLAAHFDISPPQVFKKLT 119

Query: 121 TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 180
           TF KSLGVK++FDTS SRD+TLIE CNEFI RYKQSQ +DDERS S+LPMLSSACPGWIC
Sbjct: 120 TFFKSLGVKAVFDTSSSRDITLIETCNEFITRYKQSQSNDDERSKSALPMLSSACPGWIC 179

Query: 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 240
           YAEKQLGSYILPYIS VKSPQQ +GATIKH ICQK+G RPDE+YHVTVMPCYDKKLEA R
Sbjct: 180 YAEKQLGSYILPYISPVKSPQQIVGATIKHQICQKMGLRPDEVYHVTVMPCYDKKLEAVR 239

Query: 241 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 300
           +DFV +L+SQEE   D  + I EVDSVLT+GEVLDLI+LKAV+F ALEESPLD+M +NV+
Sbjct: 240 DDFVIELESQEEN-GDSLVRIAEVDSVLTSGEVLDLIKLKAVDFPALEESPLDRMFSNVN 298

Query: 301 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 353
           +EGHLYGV+GSSGGYAETVFR+A KTLFG  I G L FKTIRN+DFREV LEV
Sbjct: 299 EEGHLYGVSGSSGGYAETVFRNATKTLFGIEINGPLTFKTIRNTDFREVTLEV 351

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449443528|ref|XP_004139529.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Cucumis sativus] gi|449505551|ref|XP_004162505.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224139480|ref|XP_002323132.1| predicted protein [Populus trichocarpa] gi|222867762|gb|EEF04893.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224086530|ref|XP_002307904.1| predicted protein [Populus trichocarpa] gi|222853880|gb|EEE91427.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359496948|ref|XP_003635380.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Vitis vinifera] gi|297744923|emb|CBI38438.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297800500|ref|XP_002868134.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313970|gb|EFH44393.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|240255938|ref|NP_567496.4| ferredoxin hydrogenase [Arabidopsis thaliana] gi|15020824|emb|CAC44620.1| Narf-like protein [Arabidopsis thaliana] gi|332658348|gb|AEE83748.1| ferredoxin hydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357467417|ref|XP_003603993.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula] gi|355493041|gb|AES74244.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula] Back     alignment and taxonomy information
>gi|356522067|ref|XP_003529671.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Glycine max] Back     alignment and taxonomy information
>gi|16754852|emb|CAD10687.1| Narf-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2130634 474 NAR1 "homolog of yeast NAR1" [ 0.958 0.734 0.752 1.3e-141
ZFIN|ZDB-GENE-070209-119 477 narfl "nuclear prelamin A reco 0.920 0.700 0.474 6.2e-78
UNIPROTKB|E1C8S8 476 NARFL "Uncharacterized protein 0.920 0.701 0.463 8.1e-76
UNIPROTKB|A8WH18 476 narfl "Cytosolic Fe-S cluster 0.922 0.703 0.448 7.3e-75
DICTYBASE|DDB_G0291149 522 DDB_G0291149 "nuclear prelamin 0.757 0.526 0.424 1.8e-74
MGI|MGI:1914813 476 Narfl "nuclear prelamin A reco 0.922 0.703 0.456 2.5e-74
UNIPROTKB|Q9H6Q4 476 NARFL "Cytosolic Fe-S cluster 0.922 0.703 0.448 2.2e-73
UNIPROTKB|Q5RF36 476 NARFL "Cytosolic Fe-S cluster 0.922 0.703 0.448 2.8e-73
RGD|1305982 476 Narfl "nuclear prelamin A reco 0.922 0.703 0.454 9.6e-73
UNIPROTKB|Q5BK18 476 Narfl "Cytosolic Fe-S cluster 0.922 0.703 0.454 9.6e-73
TAIR|locus:2130634 NAR1 "homolog of yeast NAR1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1385 (492.6 bits), Expect = 1.3e-141, P = 1.3e-141
 Identities = 268/356 (75%), Positives = 307/356 (86%)

Query:     1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQVSTSSKQQAEPVKISLKD 58
             MSEKFSPTLR+GDL+DFIAPSQ CV+SLK  K   K  D+PQV  + KQQ EPVKISLKD
Sbjct:     1 MSEKFSPTLRLGDLNDFIAPSQACVISLKDSKPIVKKSDRPQVVIAPKQQLEPVKISLKD 60

Query:    59 CLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKK 118
             CLACSGCITSAETVMLEKQSLDEFLS ++KGK V++S+SPQSRASLA H+ ISPLQVFKK
Sbjct:    61 CLACSGCITSAETVMLEKQSLDEFLSALSKGKDVVVSVSPQSRASLAVHYDISPLQVFKK 120

Query:   119 LTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGW 178
             LTTFLKSLGVK++FDTSCSRDL LIE+CNEF++RYKQ+   D E S S LP+LSSACPGW
Sbjct:   121 LTTFLKSLGVKAVFDTSCSRDLVLIESCNEFVSRYKQANSDDGENSQSPLPVLSSACPGW 180

Query:   179 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 238
             ICYAEKQLGSY+LPY+SSVKSPQQ IGA IKHH+CQ LG R  E+YHVTVMPCYDKKLEA
Sbjct:   181 ICYAEKQLGSYVLPYVSSVKSPQQAIGAAIKHHLCQALGLRLHEVYHVTVMPCYDKKLEA 240

Query:   239 AREDFVFQLDSQEETYRDEG-LEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 297
             AR+DFVF   +Q     D G L++ EVDSVLTTGE++DLI+LK V+F+ LEESPLD++LT
Sbjct:   241 ARDDFVFDDGTQ-----DNGDLKLTEVDSVLTTGEIMDLIKLKGVDFKDLEESPLDRVLT 295

Query:   298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 353
             NV +EG LYGVAGSSGGYAET+FRHAAK LFG+ IEG LEFKT+RNSDFREV L++
Sbjct:   296 NVTEEGDLYGVAGSSGGYAETIFRHAAKALFGQTIEGPLEFKTLRNSDFREVTLQL 351
GO:0005634 "nucleus" evidence=ISM
GO:0008901 "ferredoxin hydrogenase activity" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0007059 "chromosome segregation" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0009410 "response to xenobiotic stimulus" evidence=RCA
GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA
GO:0048522 "positive regulation of cellular process" evidence=RCA
ZFIN|ZDB-GENE-070209-119 narfl "nuclear prelamin A recognition factor-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8S8 NARFL "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A8WH18 narfl "Cytosolic Fe-S cluster assembly factor narfl" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291149 DDB_G0291149 "nuclear prelamin A recognition factor-like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1914813 Narfl "nuclear prelamin A recognition factor-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H6Q4 NARFL "Cytosolic Fe-S cluster assembly factor NARFL" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RF36 NARFL "Cytosolic Fe-S cluster assembly factor NARFL" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
RGD|1305982 Narfl "nuclear prelamin A recognition factor-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5BK18 Narfl "Cytosolic Fe-S cluster assembly factor NARFL" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_XVI000014
hypothetical protein (471 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.8947.1.1
Predicted protein (324 aa)
•     • 0.586
estExt_fgenesh4_pg.C_LG_X0463
hypothetical protein (485 aa)
•     • 0.570
estExt_fgenesh4_pm.C_LG_V0527
hypothetical protein (254 aa)
•     • 0.530
estExt_Genewise1_v1.C_LG_II0234
hypothetical protein (254 aa)
•     • 0.525

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
pfam02906272 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase larg 1e-76
COG4624411 COG4624, COG4624, Iron only hydrogenase large subu 4e-63
TIGR02512374 TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, grou 1e-52
TIGR04105462 TIGR04105, FeFe_hydrog_B1, [FeFe] hydrogenase, gro 7e-17
>gnl|CDD|217280 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large subunit, C-terminal domain Back     alignment and domain information 
 Score =  237 bits (606), Expect = 1e-76
 Identities = 88/267 (32%), Positives = 132/267 (49%), Gaps = 40/267 (14%)

Query: 90  KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 149
           K V+  ++P  R +  E FG+ P  V  KL   L+ LG   +FDT+   DLT++E  +EF
Sbjct: 1   KKVVAQIAPAVRVAFGEEFGLPPGTVTGKLVAALRKLGFDYVFDTAFGADLTIMEEASEF 60

Query: 150 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 209
           + R K             LPM +S CP W+ Y EK     +LP +S+ KSP Q  GA IK
Sbjct: 61  LERLK---------KGEKLPMFTSCCPAWVKYVEKYYPE-LLPNLSTCKSPMQMFGALIK 110

Query: 210 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 269
                     P +I+ V++MPC  KK EAAR +F                   +VD+VLT
Sbjct: 111 TD--------PPDIFVVSIMPCTAKKFEAARPEFKG-----------------DVDAVLT 145

Query: 270 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 329
           T E+  +I+   ++F +LE+   D  L      G ++GV   +GG  E   R A + L G
Sbjct: 146 TRELAAMIKEAGIDFASLEDEEFDSPLGESSGAGRIFGV---TGGVMEAALRTAYELLTG 202

Query: 330 KVIEGHLEFKTIRNSD-FREVALEVSF 355
           K +  ++EFK +R  +  +E  +++  
Sbjct: 203 KELP-NIEFKQVRGLEGIKEATVDIEV 228

Length = 272
>gnl|CDD|226972 COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|233903 TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, group A Back     alignment and domain information
>gnl|CDD|234472 TIGR04105, FeFe_hydrog_B1, [FeFe] hydrogenase, group B1/B3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
KOG2439 459 consensus Nuclear architecture related protein [Nu 100.0
TIGR02512374 Fe_only_hydrog hydrogenases, Fe-only. This model d 100.0
COG4624411 Iron only hydrogenase large subunit, C-terminal do 100.0
PF02906285 Fe_hyd_lg_C: Iron only hydrogenase large subunit, 100.0
PF1283724 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 97.65
PF0003724 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T 97.39
COG1142165 HycB Fe-S-cluster-containing hydrogenase component 96.99
PRK12809 639 putative oxidoreductase Fe-S binding subunit; Revi 96.88
PF1469759 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE 96.47
PF1279722 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 96.35
PF1324798 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX 96.07
COG0437203 HybA Fe-S-cluster-containing hydrogenase component 95.93
PF1469759 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE 95.85
PRK1544995 ferredoxin-like protein FixX; Provisional 95.62
PF1280017 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 95.57
TIGR02494295 PFLE_PFLC glycyl-radical enzyme activating protein 95.56
COG2768354 Uncharacterized Fe-S center protein [General funct 95.52
PF1318755 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_ 95.41
PF1279815 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 95.07
PRK13409 590 putative ATPase RIL; Provisional 94.81
PF1323752 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A. 94.63
TIGR03478321 DMSO_red_II_bet DMSO reductase family type II enzy 94.31
PRK09624105 porD pyuvate ferredoxin oxidoreductase subunit del 94.3
PRK09625133 porD pyruvate flavodoxin oxidoreductase subunit de 94.28
TIGR01660492 narH nitrate reductase, beta subunit. The Nitrate 94.16
COG1245 591 Predicted ATPase, RNase L inhibitor (RLI) homolog 94.02
PRK09626103 oorD 2-oxoglutarate-acceptor oxidoreductase subuni 93.99
PF1374669 Fer4_18: 4Fe-4S dicluster domain 93.97
COG3383 978 Uncharacterized anaerobic dehydrogenase [General f 93.82
PF1283852 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014 93.74
COG1143172 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino 93.56
PRK05113191 electron transport complex protein RnfB; Provision 93.43
COG114599 NapF Ferredoxin [Energy production and conversion] 93.38
PRK08764135 ferredoxin; Provisional 93.32
TIGR0293691 fdxN_nitrog ferredoxin III, nif-specific. Members 93.31
PRK08348120 NADH-plastoquinone oxidoreductase subunit; Provisi 93.26
TIGR02066341 dsrB sulfite reductase, dissimilatory-type beta su 93.2
COG1143172 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino 93.12
PRK14993244 tetrathionate reductase subunit B; Provisional 93.02
PF1323752 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A. 93.01
TIGR01582283 FDH-beta formate dehydrogenase, beta subunit, Fe-S 92.91
TIGR01944165 rnfB electron transport complex, RnfABCDGE type, B 92.9
TIGR0217978 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta 92.87
PRK09623105 vorD 2-ketoisovalerate ferredoxin oxidoreductase s 92.85
TIGR0293691 fdxN_nitrog ferredoxin III, nif-specific. Members 92.74
PRK06991270 ferredoxin; Provisional 92.63
TIGR02060132 aprB adenosine phosphosulphate reductase, beta sub 92.5
PRK08348120 NADH-plastoquinone oxidoreductase subunit; Provisi 92.4
COG2221317 DsrA Dissimilatory sulfite reductase (desulfovirid 92.29
PRK08222181 hydrogenase 4 subunit H; Validated 92.24
COG114668 Ferredoxin [Energy production and conversion] 92.23
COG1034 693 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc 92.1
TIGR03149225 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S 91.87
TIGR00402101 napF ferredoxin-type protein NapF. The gene codes 91.76
TIGR00403183 ndhI NADH-plastoquinone oxidoreductase subunit I p 91.76
PRK12387180 formate hydrogenlyase complex iron-sulfur subunit; 91.48
PF1318755 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_ 91.48
CHL0006581 psaC photosystem I subunit VII 91.44
TIGR02163255 napH_ ferredoxin-type protein, NapH/MauN family. M 91.41
TIGR02912314 sulfite_red_C sulfite reductase, subunit C. Member 91.14
PLN0007181 photosystem I subunit VII; Provisional 91.05
PRK08222181 hydrogenase 4 subunit H; Validated 91.03
PRK09477271 napH quinol dehydrogenase membrane component; Prov 90.94
TIGR00403183 ndhI NADH-plastoquinone oxidoreductase subunit I p 90.83
PRK06273165 ferredoxin; Provisional 90.59
COG114168 Fer Ferredoxin [Energy production and conversion] 90.56
PF1345965 Fer4_15: 4Fe-4S single cluster domain 90.44
PRK10194163 ferredoxin-type protein; Provisional 90.3
PRK07569234 bidirectional hydrogenase complex protein HoxU; Va 90.07
TIGR02951161 DMSO_dmsB DMSO reductase, iron-sulfur subunit. Thi 90.06
TIGR0217978 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta 90.02
COG114599 NapF Ferredoxin [Energy production and conversion] 90.0
PRK10882328 hydrogenase 2 protein HybA; Provisional 89.91
PF1283852 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014 89.75
PRK12771564 putative glutamate synthase (NADPH) small subunit; 89.61
CHL0006581 psaC photosystem I subunit VII 89.55
KOG3256212 consensus NADH:ubiquinone oxidoreductase, NDUFS8/2 89.29
CHL00014167 ndhI NADH dehydrogenase subunit I 89.27
TIGR02494295 PFLE_PFLC glycyl-radical enzyme activating protein 89.24
PRK05888164 NADH dehydrogenase subunit I; Provisional 89.16
PRK09625133 porD pyruvate flavodoxin oxidoreductase subunit de 88.98
PF1337058 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 88.98
CHL00014167 ndhI NADH dehydrogenase subunit I 88.92
COG114491 Pyruvate:ferredoxin oxidoreductase and related 2-o 88.87
PRK0265181 photosystem I subunit VII; Provisional 88.86
PRK09898208 hypothetical protein; Provisional 88.86
TIGR0304880 PS_I_psaC photosystem I iron-sulfur protein PsaC. 88.83
PRK10330181 formate dehydrogenase-H ferredoxin subunit; Provis 88.71
TIGR01971122 NuoI NADH-quinone oxidoreductase, chain I. This mo 88.7
TIGR01971122 NuoI NADH-quinone oxidoreductase, chain I. This mo 88.37
PRK05888164 NADH dehydrogenase subunit I; Provisional 88.37
PRK06273165 ferredoxin; Provisional 88.33
TIGR02064402 dsrA sulfite reductase, dissimilatory-type alpha s 88.33
PLN0007181 photosystem I subunit VII; Provisional 87.9
TIGR02512374 Fe_only_hydrog hydrogenases, Fe-only. This model d 87.49
PF1348467 Fer4_16: 4Fe-4S double cluster binding domain 87.44
TIGR0304880 PS_I_psaC photosystem I iron-sulfur protein PsaC. 86.85
PRK09626103 oorD 2-oxoglutarate-acceptor oxidoreductase subuni 86.68
PRK06991270 ferredoxin; Provisional 86.48
PRK06259486 succinate dehydrogenase/fumarate reductase iron-su 86.47
COG1149284 MinD superfamily P-loop ATPase containing an inser 86.42
TIGR02700234 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T 86.26
PRK0265181 photosystem I subunit VII; Provisional 86.24
PRK07118280 ferredoxin; Validated 86.19
PRK08493 819 NADH dehydrogenase subunit G; Validated 86.09
TIGR01944165 rnfB electron transport complex, RnfABCDGE type, B 86.06
PRK05113191 electron transport complex protein RnfB; Provision 86.02
PRK09624105 porD pyuvate ferredoxin oxidoreductase subunit del 85.76
TIGR03287391 methan_mark_16 putative methanogenesis marker 16 m 84.68
PRK12387180 formate hydrogenlyase complex iron-sulfur subunit; 84.67
TIGR02176 1165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 84.35
TIGR03224411 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p 84.17
PRK10194163 ferredoxin-type protein; Provisional 84.15
TIGR02060132 aprB adenosine phosphosulphate reductase, beta sub 84.09
PRK12769 654 putative oxidoreductase Fe-S binding subunit; Revi 84.01
PRK14028312 pyruvate ferredoxin oxidoreductase subunit gamma/d 83.89
PRK09623105 vorD 2-ketoisovalerate ferredoxin oxidoreductase s 83.87
PRK07118280 ferredoxin; Validated 83.86
TIGR02910334 sulfite_red_A sulfite reductase, subunit A. Member 83.48
COG4231640 Indolepyruvate ferredoxin oxidoreductase, alpha an 83.43
COG0247388 GlpC Fe-S oxidoreductase [Energy production and co 83.39
PRK12809 639 putative oxidoreductase Fe-S binding subunit; Revi 83.17
COG1453391 Predicted oxidoreductases of the aldo/keto reducta 82.89
TIGR00397213 mauM_napG MauM/NapG family ferredoxin-type protein 82.6
TIGR00402101 napF ferredoxin-type protein NapF. The gene codes 82.53
PRK098531019 putative selenate reductase subunit YgfK; Provisio 82.32
cd07030259 RNAP_D D subunit of Archaeal RNA polymerase. The D 81.58
PRK08318420 dihydropyrimidine dehydrogenase subunit B; Validat 81.42
COG1150195 HdrC Heterodisulfide reductase, subunit C [Energy 81.1
TIGR02700234 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T 80.97
PF1353461 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9 80.91
PF1318357 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_ 80.8
TIGR03224411 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p 80.27
COG2768354 Uncharacterized Fe-S center protein [General funct 80.19
PRK09326341 F420H2 dehydrogenase subunit F; Provisional 80.16
>KOG2439 consensus Nuclear architecture related protein [Nuclear structure] Back     alignment and domain information 
Probab=100.00  E-value=7.7e-83  Score=618.36  Aligned_cols=327  Identities=49%  Similarity=0.829  Sum_probs=290.4

Q ss_pred             cccccCCCCCcccCCCcccccccccCCCCCCC-------CCCCccccc---cCCCceeeccCCcccCCcccccccccccc
Q 017974            6 SPTLRIGDLSDFIAPSQNCVVSLKKATFKNPD-------KPQVSTSSK---QQAEPVKISLKDCLACSGCITSAETVMLE   75 (363)
Q Consensus         6 s~~~~~~~l~d~i~p~~~ci~p~~~~~~~~~~-------~~~~~~~~~---~~~~ka~I~~~dCi~Cg~Cit~c~~~~i~   75 (363)
                      |++|+++||||||+|+++||+|++....+.+.       ........+   .+.++|+|+++|||||+||||++|+++++
T Consensus         1 s~~l~l~dlnDFi~p~~~CikP~~~~k~~~~~~~~v~~d~~~~v~~e~g~t~~l~~~kISLsDCLACSGCITSaEtVlls   80 (459)
T KOG2439|consen    1 SALLRLSDLNDFIAPSLACIKPLQVSKTKKKKNIRVDADGPYEVIKEKGETHQLEKVKISLSDCLACSGCITSAETVLLS   80 (459)
T ss_pred             CCcccccchhhhhchHHHhccchhhcccccCCcccccCCCcceeecCCCccccccceeeeHHhhhhccCccchhhhhhhh
Confidence            78999999999999999999999874432211       112222222   47789999999999999999999999999


Q ss_pred             cccHHHHHHhhcCCC---eEEEEeCcchhhHHhhHhCCChHHHHHHHHHHHHHcCCeEEEechhHHHHHHHHHHHHHHHH
Q 017974           76 KQSLDEFLSNINKGK---AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIAR  152 (363)
Q Consensus        76 ~~~~~~~~~~L~~~k---~~V~sisP~~~~sl~~~f~~~~~~~~~~l~~~Lk~LGf~~V~Dta~~adi~~~e~~~ef~~~  152 (363)
                      +|+..+|++.|.+.|   .+|+++|||+|+|||++||++..++..+|..|+|+|||++|+||++++++++.|+.+||+++
T Consensus        81 ~Qs~~~~~k~l~~~k~~~~lvvsvSPQ~~~slAa~~gls~~e~~~~L~~F~kklgvhyv~DT~~sR~~sl~es~~Efv~~  160 (459)
T KOG2439|consen   81 EQSHKEFLKVLQKSKQQKVLVVSVSPQSRASLAAKYGLSLREAALRLTSFFKKLGVHYVVDTSFSRDFSLSESYEEFVAR  160 (459)
T ss_pred             hhhHHHHHHhhhhccccceEEEecChhHHHHHHHHhCCCHHHHHHHHHHHHHhcCeeEEeehHHHHHHHHHHHHHHHHHH
Confidence            999999999887765   88999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhhhccCcccccCCCCCceecCChhHHHHHHhhcCCCccCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEEEEecc
Q 017974          153 YKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY  232 (363)
Q Consensus       153 ~~~~~~~~~~~~~~~~PlisS~CPg~V~yiEk~~~p~Li~~Ls~v~SP~~i~g~liK~~~~~~~~~~~~~i~~V~I~PC~  232 (363)
                      ++.+..      ....||++|+|||||||+||++ |.||||||+++||||++|++||.++.++.++.|+++|||++|||+
T Consensus       161 ~r~~~~------~~~~PlLsSaCPG~v~YaEkt~-~~Lip~ls~vkSPQQi~Gslikd~~~~q~~l~p~~v~hvsvMPCf  233 (459)
T KOG2439|consen  161 YRQHSE------EERTPLLSSACPGWVCYAEKTH-GRLIPHLSRVKSPQQIMGSLIKDFFASQQSLSPEKVFHVSVMPCF  233 (459)
T ss_pred             hhcccc------cccccchhhcCCceeEEeeccc-cccchhhhccCCHHHhhhHHHHHHHHHhcCCCccceeeEeecccc
Confidence            875322      3456999999999999999999 889999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhhhhhccccchhccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCccccCCCCc
Q 017974          233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS  312 (363)
Q Consensus       233 aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~l~~~~~~~~d~~~~~~s~~g~~~~~~~~S  312 (363)
                      |||+||+|++|...             +..++|||||++||.++|++.+++++..... .|.+++..+.....+..||+|
T Consensus       234 DKKLEAsR~~f~~~-------------~~r~~DcVlT~~Ei~k~l~e~~~~l~~~~~~-~d~l~~~~~~~~~~~~~GgsS  299 (459)
T KOG2439|consen  234 DKKLEASREEFKEH-------------GVRDVDCVLTTGEIFKLLEELDFDLPVRDAE-VDTLPSGLSRETVTSNDGGSS  299 (459)
T ss_pred             cHhhhccchhhhcc-------------CCcccceEeehHHHHHHHHhcCcccccccch-hhcccccccccceeeccCCCC
Confidence            99999999999621             3578999999999999999999999877654 555555555556678889999


Q ss_pred             chHHHHHHHHHHHHhcCCccccccceeeeeCCCeEEEEEEec
Q 017974          313 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVS  354 (363)
Q Consensus       313 GG~~e~i~~~~~k~l~~~~i~~~l~~~~~rn~d~~E~~l~~~  354 (363)
                      |||+++|++++++++||.++. +++++.+||+||+|+|++.+
T Consensus       300 GGYa~~i~r~aak~lfg~~v~-~~t~k~~rN~Df~e~tl~~~  340 (459)
T KOG2439|consen  300 GGYAEHIFRHAAKELFGEIVE-PVTYKELRNSDFREVTLEKN  340 (459)
T ss_pred             cchHHHHHHHHHHHhcCCccc-chhhhhhccccceeeeeecC
Confidence            999999999999999999986 89999999999999999965

>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only Back     alignment and domain information
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only] Back     alignment and domain information
>PF02906 Fe_hyd_lg_C: Iron only hydrogenase large subunit, C-terminal domain; InterPro: IPR004108 Proteins containing this domain may be involved in the mechanism of biological hydrogen activation and contain 4FE-4S clusters Back     alignment and domain information
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion] Back     alignment and domain information
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed Back     alignment and domain information
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B Back     alignment and domain information
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B Back     alignment and domain information
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion] Back     alignment and domain information
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B Back     alignment and domain information
>PRK15449 ferredoxin-like protein FixX; Provisional Back     alignment and domain information
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family Back     alignment and domain information
>COG2768 Uncharacterized Fe-S center protein [General function prediction only] Back     alignment and domain information
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J Back     alignment and domain information
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A Back     alignment and domain information
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit Back     alignment and domain information
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>TIGR01660 narH nitrate reductase, beta subunit Back     alignment and domain information
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] Back     alignment and domain information
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed Back     alignment and domain information
>PF13746 Fer4_18: 4Fe-4S dicluster domain Back     alignment and domain information
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only] Back     alignment and domain information
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion] Back     alignment and domain information
>PRK05113 electron transport complex protein RnfB; Provisional Back     alignment and domain information
>COG1145 NapF Ferredoxin [Energy production and conversion] Back     alignment and domain information
>PRK08764 ferredoxin; Provisional Back     alignment and domain information
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific Back     alignment and domain information
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional Back     alignment and domain information
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit Back     alignment and domain information
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion] Back     alignment and domain information
>PRK14993 tetrathionate reductase subunit B; Provisional Back     alignment and domain information
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A Back     alignment and domain information
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing Back     alignment and domain information
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit Back     alignment and domain information
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific Back     alignment and domain information
>PRK06991 ferredoxin; Provisional Back     alignment and domain information
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit Back     alignment and domain information
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional Back     alignment and domain information
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>PRK08222 hydrogenase 4 subunit H; Validated Back     alignment and domain information
>COG1146 Ferredoxin [Energy production and conversion] Back     alignment and domain information
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion] Back     alignment and domain information
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein Back     alignment and domain information
>TIGR00402 napF ferredoxin-type protein NapF Back     alignment and domain information
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein Back     alignment and domain information
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional Back     alignment and domain information
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J Back     alignment and domain information
>CHL00065 psaC photosystem I subunit VII Back     alignment and domain information
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family Back     alignment and domain information
>TIGR02912 sulfite_red_C sulfite reductase, subunit C Back     alignment and domain information
>PLN00071 photosystem I subunit VII; Provisional Back     alignment and domain information
>PRK08222 hydrogenase 4 subunit H; Validated Back     alignment and domain information
>PRK09477 napH quinol dehydrogenase membrane component; Provisional Back     alignment and domain information
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein Back     alignment and domain information
>PRK06273 ferredoxin; Provisional Back     alignment and domain information
>COG1141 Fer Ferredoxin [Energy production and conversion] Back     alignment and domain information
>PF13459 Fer4_15: 4Fe-4S single cluster domain Back     alignment and domain information
>PRK10194 ferredoxin-type protein; Provisional Back     alignment and domain information
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated Back     alignment and domain information
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit Back     alignment and domain information
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>COG1145 NapF Ferredoxin [Energy production and conversion] Back     alignment and domain information
>PRK10882 hydrogenase 2 protein HybA; Provisional Back     alignment and domain information
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters Back     alignment and domain information
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional Back     alignment and domain information
>CHL00065 psaC photosystem I subunit VII Back     alignment and domain information
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion] Back     alignment and domain information
>CHL00014 ndhI NADH dehydrogenase subunit I Back     alignment and domain information
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family Back     alignment and domain information
>PRK05888 NADH dehydrogenase subunit I; Provisional Back     alignment and domain information
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A Back     alignment and domain information
>CHL00014 ndhI NADH dehydrogenase subunit I Back     alignment and domain information
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion] Back     alignment and domain information
>PRK02651 photosystem I subunit VII; Provisional Back     alignment and domain information
>PRK09898 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC Back     alignment and domain information
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional Back     alignment and domain information
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I Back     alignment and domain information
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I Back     alignment and domain information
>PRK05888 NADH dehydrogenase subunit I; Provisional Back     alignment and domain information
>PRK06273 ferredoxin; Provisional Back     alignment and domain information
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit Back     alignment and domain information
>PLN00071 photosystem I subunit VII; Provisional Back     alignment and domain information
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only Back     alignment and domain information
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain Back     alignment and domain information
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC Back     alignment and domain information
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed Back     alignment and domain information
>PRK06991 ferredoxin; Provisional Back     alignment and domain information
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional Back     alignment and domain information
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] Back     alignment and domain information
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family Back     alignment and domain information
>PRK02651 photosystem I subunit VII; Provisional Back     alignment and domain information
>PRK07118 ferredoxin; Validated Back     alignment and domain information
>PRK08493 NADH dehydrogenase subunit G; Validated Back     alignment and domain information
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit Back     alignment and domain information
>PRK05113 electron transport complex protein RnfB; Provisional Back     alignment and domain information
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein Back     alignment and domain information
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein Back     alignment and domain information
>PRK10194 ferredoxin-type protein; Provisional Back     alignment and domain information
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit Back     alignment and domain information
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed Back     alignment and domain information
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional Back     alignment and domain information
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed Back     alignment and domain information
>PRK07118 ferredoxin; Validated Back     alignment and domain information
>TIGR02910 sulfite_red_A sulfite reductase, subunit A Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed Back     alignment and domain information
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only] Back     alignment and domain information
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein Back     alignment and domain information
>TIGR00402 napF ferredoxin-type protein NapF Back     alignment and domain information
>PRK09853 putative selenate reductase subunit YgfK; Provisional Back     alignment and domain information
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion] Back     alignment and domain information
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family Back     alignment and domain information
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B Back     alignment and domain information
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N Back     alignment and domain information
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein Back     alignment and domain information
>COG2768 Uncharacterized Fe-S center protein [General function prediction only] Back     alignment and domain information
>PRK09326 F420H2 dehydrogenase subunit F; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
1feh_A 574 Fe-Only Hydrogenase From Clostridium Pasteurianum L 3e-31
3lx4_A 457 Stepwise [fefe]-Hydrogenase H-Cluster Assembly Reve 2e-30
1e08_A371 Structural Model Of The [fe]-HydrogenaseCYTOCHROME 1e-27
1hfe_L421 1.6 A Resolution Structure Of The Fe-Only Hydrogena 2e-27
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum Length = 574 Back     alignment and structure 
Iteration: 1

 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 145/301 (48%), Gaps = 31/301 (10%)
Query: 58  DCLACSGCITSAETVML-EKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGIS-PLQ 114
           +CL C  CI +     L EK  +D   + +N   K VI++++P  RAS+ E F +   + 
Sbjct: 189 NCLLCGQCIIACPVAALSEKSHMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
           V  K+ T L+ LG   IFD +   D+T++E   E + R +         +N   PM +S 
Sbjct: 249 VTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIE---------NNGPFPMFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
           CPGW+  AE      +L  +SS KSPQQ  G   K +     G  P  ++ VTVMPC  K
Sbjct: 300 CPGWVRQAENYYPE-LLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
           K EA R         +++  RD       +D+V+TT E+  +I+   + F  LE+S  D 
Sbjct: 359 KFEADRPQM------EKDGLRD-------IDAVITTRELAKMIKDAKIPFAKLEDSEADP 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
            +      G ++   G++GG  E   R A        +E  +E+K +R  +  +E  +E+
Sbjct: 406 AMGEYSGAGAIF---GATGGVMEAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEI 461
Query: 354 S 354
           +
Sbjct: 462 N 462
>pdb|3LX4|A Chain A, Stepwise [fefe]-Hydrogenase H-Cluster Assembly Revealed In The Structure Of Hyda(Deltaefg) Length = 457 Back     alignment and structure
>pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553 Complex Combining Nmr And Soft-Docking Length = 371 Back     alignment and structure
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From Desulfovibrio Desulfuricans Length = 421 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
1hfe_L421 Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg 1e-103
3lx4_A 457 Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, 4e-96
3c8y_A 574 Iron hydrogenase 1; dithiomethylether, H-cluster, 3e-93
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-13
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Length = 421 Back     alignment and structure
 Score =  310 bits (795), Expect = e-103
 Identities = 85/320 (26%), Positives = 146/320 (45%), Gaps = 30/320 (9%)

Query: 39  PQVSTSSKQQAEPVKISLKDCLACSGCITSA-ETVMLEKQS-LDEFLSNINKG-KAVIIS 95
           P  +   +         ++ C+ C  C+T   E  + E QS + E    +  G    I  
Sbjct: 46  PTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDGKVKCIAM 105

Query: 96  LSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 154
            +P  R +L + FG+    V   K+   L+ LG    +DT  + D+T+ E  +EF+ R  
Sbjct: 106 PAPAVRYALGDAFGMPVGSVTTGKMLAALQKLGFAHCWDTEFTADVTIWEEGSEFVERLT 165

Query: 155 QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 214
                  ++S+  LP  +S CPGW  YAE      +LP+ S+ KSP    GA  K +  +
Sbjct: 166 -------KKSDMPLPQFTSCCPGWQKYAETYYPE-LLPHFSTCKSPIGMNGALAKTYGAE 217

Query: 215 KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 274
           ++ + P ++Y V++MPC  KK E  R +            +  G  + ++D+ LTT E+ 
Sbjct: 218 RMKYDPKQVYTVSIMPCIAKKYEGLRPEL-----------KSSG--MRDIDATLTTRELA 264

Query: 275 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG 334
            +I+   ++F  L +   D ++        ++GV   +GG  E   R A + + GK  + 
Sbjct: 265 YMIKKAGIDFAKLPDGKRDSLMGESTGGATIFGV---TGGVMEAALRFAYEAVTGKKPD- 320

Query: 335 HLEFKTIRNSD-FREVALEV 353
             +FK +R  D  +E  + V
Sbjct: 321 SWDFKAVRGLDGIKEATVNV 340
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii} Length = 457 Back     alignment and structure
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* Length = 574 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
3lx4_A 457 Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, 100.0
3c8y_A 574 Iron hydrogenase 1; dithiomethylether, H-cluster, 100.0
1hfe_L421 Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg 100.0
1q16_B512 Respiratory nitrate reductase 1 beta chain; membra 99.92
1ti6_B274 Pyrogallol hydroxytransferase small subunit; molyb 97.38
1kqf_B294 FDH-N beta S, formate dehydrogenase, nitrate-induc 97.23
1bc6_A77 7-Fe ferredoxin; electron transport, iron-sulfur; 96.59
2ivf_B352 Ethylbenzene dehydrogenase beta-subunit; anaerobic 96.52
7fd1_A106 FD1, protein (7-Fe ferredoxin I); electron transpo 96.06
1h98_A78 Ferredoxin; electron transport, thermophilic, iron 95.67
2fdn_A55 Ferredoxin; electron transport, iron-sulfur, 4Fe-4 95.67
2v2k_A105 Ferredoxin; iron, transport, iron-sulfur, mycobact 95.44
1rgv_A80 Ferredoxin; electron transport; 2.90A {Thauera aro 95.37
3eun_A82 Ferredoxin; electron transport, [4Fe-4S] cluster, 95.23
2vpz_B195 NRFC protein; oxidoreductase, molybdopterin guanin 95.07
2fgo_A82 Ferredoxin; allochromatium vinosum, [4Fe-4S] clust 94.93
3eun_A82 Ferredoxin; electron transport, [4Fe-4S] cluster, 94.84
3or1_B386 Sulfite reductase beta; dissimilatory sulfite redu 94.77
2zvs_A85 Uncharacterized ferredoxin-like protein YFHL; elec 94.68
1rgv_A80 Ferredoxin; electron transport; 2.90A {Thauera aro 94.65
2fdn_A55 Ferredoxin; electron transport, iron-sulfur, 4Fe-4 94.58
3mm5_B366 Sulfite reductase, dissimilatory-type subunit BET; 94.54
2fgo_A82 Ferredoxin; allochromatium vinosum, [4Fe-4S] clust 94.49
1dax_A64 Ferredoxin I; electron transport, electron-transfe 94.47
3j16_B 608 RLI1P; ribosome recycling, translation, eukarya, r 94.33
2zvs_A85 Uncharacterized ferredoxin-like protein YFHL; elec 94.32
1xer_A103 Ferredoxin; electron transport, iron-sulfur, dupli 94.17
3mm5_A418 Sulfite reductase, dissimilatory-type subunit ALP; 94.01
1iqz_A81 Ferredoxin; iron-sulfer protein, ultlahigh resolut 93.92
1jb0_C80 Photosystem I iron-sulfur center; membrane protein 93.89
1rof_A60 Ferredoxin; electron transport, iron-sulfur; NMR { 93.89
1kqf_B294 FDH-N beta S, formate dehydrogenase, nitrate-induc 93.74
1rof_A60 Ferredoxin; electron transport, iron-sulfur; NMR { 93.7
1f2g_A58 Ferredoxin II; electron transport, FDII desulfovib 93.62
1jnr_B150 Adenylylsulfate reductase; oxidoreductase; HET: FA 93.61
1dwl_A59 Ferredoxin I; electron transfer, model, heteronucl 93.53
1dax_A64 Ferredoxin I; electron transport, electron-transfe 93.36
3gyx_B166 Adenylylsulfate reductase; oxidoreductase; HET: FA 93.34
1dwl_A59 Ferredoxin I; electron transfer, model, heteronucl 93.09
1f2g_A58 Ferredoxin II; electron transport, FDII desulfovib 92.97
1sj1_A66 Ferredoxin; thermostability, iron-sulfur cluster, 92.96
3i9v_9182 NADH-quinone oxidoreductase subunit 9; electron tr 92.74
1xer_A103 Ferredoxin; electron transport, iron-sulfur, dupli 92.65
3or1_A437 Sulfite reductase alpha; dissimilatory sulfite red 92.61
1bc6_A77 7-Fe ferredoxin; electron transport, iron-sulfur; 92.58
1jb0_C80 Photosystem I iron-sulfur center; membrane protein 91.63
7fd1_A106 FD1, protein (7-Fe ferredoxin I); electron transpo 90.77
3i9v_9182 NADH-quinone oxidoreductase subunit 9; electron tr 90.28
1h98_A78 Ferredoxin; electron transport, thermophilic, iron 90.08
3gyx_B166 Adenylylsulfate reductase; oxidoreductase; HET: FA 89.89
1iqz_A81 Ferredoxin; iron-sulfer protein, ultlahigh resolut 89.74
1hfe_L421 Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg 89.55
2gmh_A584 Electron transfer flavoprotein-ubiquinone oxidored 89.54
3bk7_A 607 ABC transporter ATP-binding protein; ABC ATPase, i 89.38
2v2k_A105 Ferredoxin; iron, transport, iron-sulfur, mycobact 88.94
1h0h_B214 Formate dehydrogenase (small subunit); tungsten se 88.64
1jnr_B150 Adenylylsulfate reductase; oxidoreductase; HET: FA 88.58
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 85.24
2wdq_B238 Succinate dehydrogenase iron-sulfur subunit; succi 83.52
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 83.51
3i9v_3 783 NADH-quinone oxidoreductase subunit 3; electron tr 81.04
2pa8_D265 DNA-directed RNA polymerase subunit D; ferredoxin- 80.63
1sj1_A66 Ferredoxin; thermostability, iron-sulfur cluster, 80.05
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii} Back     alignment and structure
Probab=100.00  E-value=2.4e-65  Score=513.53  Aligned_cols=269  Identities=30%  Similarity=0.550  Sum_probs=235.4

Q ss_pred             ccccccccccHHHHHHhhcCC------CeEEEEeCcchhhHHhhHhCCChHHH-HHHHHHHHHHcCCeEEEechhHHHHH
Q 017974           69 AETVMLEKQSLDEFLSNINKG------KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLT  141 (363)
Q Consensus        69 c~~~~i~~~~~~~~~~~L~~~------k~~V~sisP~~~~sl~~~f~~~~~~~-~~~l~~~Lk~LGf~~V~Dta~~adi~  141 (363)
                      ++..+.+.++++++++.|++.      +++||+||||+|++|+++||++++.. +++|..+||+|||++||||++|||++
T Consensus        18 ~~~a~~~~~~~~~v~~aL~~~~~~~~~k~vVasvAPavrasl~~~FGl~~~~~t~gkl~~aLk~LGFd~VfDta~gADlt   97 (457)
T 3lx4_A           18 APAAEAPLSHVQQALAELAKPKDDPTRKHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLT   97 (457)
T ss_dssp             -------CCHHHHHHHHHHSCTTCTTCCEEEEEECHHHHHHGGGGGTCCTTCSCHHHHHHHHHHTTCSEEEETHHHHHHH
T ss_pred             ccccccccchHHHHHHHHhCcCcccCCceEEEEECcHHHHHHHHHhCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence            344445578899999999875      69999999999999999999987654 79999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccCcccccCCCCCceecCChhHHHHHHhhcCCCccCCCCCCCCHHHHHHHHHHHHHhHhhCCCCC
Q 017974          142 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD  221 (363)
Q Consensus       142 ~~e~~~ef~~~~~~~~~~~~~~~~~~~PlisS~CPg~V~yiEk~~~p~Li~~Ls~v~SP~~i~g~liK~~~~~~~~~~~~  221 (363)
                      +.|+++||++|++++... ......++|||||||||||+||||+| |+|+||||+++|||||+|+++|++|++++|++|+
T Consensus        98 i~EEa~Ef~~r~~~~l~~-~~~~~~~lPmiTScCPgWV~yiEk~y-PeLlp~LSt~kSPqqm~G~liK~y~a~~~gi~p~  175 (457)
T 3lx4_A           98 IMEEGSELLHRLTEHLEA-HPHSDEPLPMFTSCCPGWIAMLEKSY-PDLIPYVSSCKSPQMMLAAMVKSYLAEKKGIAPK  175 (457)
T ss_dssp             HHHHHHHHHHHHHHHHCC------CCSSEECCCCHHHHHHHHHHC-GGGGGGBCCBCCHHHHHHHHHHHHHHHHHTCCGG
T ss_pred             HHHHHHHHHHHHHhhhcc-ccccCCCCceEecCCHHHHHHHHHhC-cccccccCCCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence            999999999998532210 00024578999999999999999999 9999999999999999999999999999999999


Q ss_pred             CeEEEEEEeccchhhhhhhhhhhhccccchhccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCCCCCcccccCCCCCC
Q 017974          222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDD  301 (363)
Q Consensus       222 ~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~l~~~~~~~~d~~~~~~s~  301 (363)
                      +|++||||||+|||+||.|+++...          ...+.++||+||||+||.+||++.|||+.++++.++|.+++..++
T Consensus       176 ~i~vV~ImPC~AKK~EA~R~e~~~~----------~~~g~~dVD~VLTtrEL~~mik~~gId~~~l~~~~~D~p~g~~sg  245 (457)
T 3lx4_A          176 DMVMVSIMPCTRKQSEADRDWFCVD----------ADPTLRQLDHVITTVELGNIFKERGINLAELPEGEWDNPMGVGSG  245 (457)
T ss_dssp             GEEEEEEESCSSHHHHHTCTTCBCC-------------CCBSSCEEEEHHHHHHHHHHTTCCGGGSCCCCCCCTTSSSSS
T ss_pred             cEEEEEEEcccchHHHhcCcccccc----------cccCCccccEEeeHHHHHHHHHHcCCChhhCCcccccccccccCC
Confidence            9999999999999999999987420          001357899999999999999999999999999999999998899


Q ss_pred             CCccccCCCCcchHHHHHHHHHHHHhcCCccccccceeeeeCCC-eEEEEEEe
Q 017974          302 EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV  353 (363)
Q Consensus       302 ~g~~~~~~~~SGG~~e~i~~~~~k~l~~~~i~~~l~~~~~rn~d-~~E~~l~~  353 (363)
                      .|++|+.   |||++++++|++++.++|.++. .++|+.+||.| ++|.++..
T Consensus       246 aG~iFg~---sGGV~EAv~r~a~~~~~g~~~~-~~~~~~vrg~~g~kea~v~~  294 (457)
T 3lx4_A          246 AGVLFGT---TGGVMEAALRTAYELFTGTPLP-RLSLSEVRGMDGIKETNITM  294 (457)
T ss_dssp             CSCCSSB---CCCHHHHHHHHHHHHHHSSCCC-CCCCEECTTCTTEEEEEEEE
T ss_pred             CceecCC---cccHHHHHHHHHHHHhhCCCCc-cccceeecCCCCceEEEEEe
Confidence            9999988   9999999999999999999985 89999999976 99999887
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* Back     alignment and structure
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Back     alignment and structure
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B* Back     alignment and structure
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Back     alignment and structure
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B* Back     alignment and structure
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A Back     alignment and structure
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} Back     alignment and structure
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ... Back     alignment and structure
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 Back     alignment and structure
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A Back     alignment and structure
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis} Back     alignment and structure
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1 Back     alignment and structure
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A Back     alignment and structure
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B* Back     alignment and structure
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa} Back     alignment and structure
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A Back     alignment and structure
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B* Back     alignment and structure
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli} Back     alignment and structure
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1 Back     alignment and structure
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A Back     alignment and structure
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B* Back     alignment and structure
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa} Back     alignment and structure
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli} Back     alignment and structure
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A Back     alignment and structure
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A* Back     alignment and structure
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* Back     alignment and structure
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* Back     alignment and structure
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Back     alignment and structure
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B* Back     alignment and structure
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Back     alignment and structure
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Back     alignment and structure
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B* Back     alignment and structure
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 Back     alignment and structure
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Back     alignment and structure
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Back     alignment and structure
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 Back     alignment and structure
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Back     alignment and structure
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A Back     alignment and structure
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9* Back     alignment and structure
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A Back     alignment and structure
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A* Back     alignment and structure
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A Back     alignment and structure
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* Back     alignment and structure
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ... Back     alignment and structure
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9* Back     alignment and structure
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 Back     alignment and structure
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Back     alignment and structure
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* Back     alignment and structure
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Back     alignment and structure
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Back     alignment and structure
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Back     alignment and structure
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis} Back     alignment and structure
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5 Back     alignment and structure
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B* Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B* Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3* Back     alignment and structure
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D Back     alignment and structure
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 363
d1hfel1312 c.96.1.1 (L:87-398) Fe-only hydrogenase larger sub 8e-73
d3c8ya1 365 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalyti 2e-72
d1y5ib1509 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 9e-09
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit, C-domain {Desulfovibrio desulfuricans [TaxId: 876]} Length = 312 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Fe-only hydrogenase
superfamily: Fe-only hydrogenase
family: Fe-only hydrogenase
domain: Fe-only hydrogenase larger subunit, C-domain
species: Desulfovibrio desulfuricans [TaxId: 876]

 Score =  226 bits (578), Expect = 8e-73
 Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 26/267 (9%)

Query: 87  NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 145
           +     I   +P  R +L + FG+    V   K+   L+ LG    +DT  + D+T+ E 
Sbjct: 11  DGKVKCIAMPAPAVRYALGDAFGMPVGSVTTGKMLAALQKLGFAHCWDTEFTADVTIWEE 70

Query: 146 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 205
            +EF+ R         ++S+  LP  +S CPGW  YAE      +LP+ S+ KSP    G
Sbjct: 71  GSEFVERLT-------KKSDMPLPQFTSCCPGWQKYAETYYPE-LLPHFSTCKSPIGMNG 122

Query: 206 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 265
           A  K +  +++ + P ++Y V++MPC  KK E  R +              +   + ++D
Sbjct: 123 ALAKTYGAERMKYDPKQVYTVSIMPCIAKKYEGLRPEL-------------KSSGMRDID 169

Query: 266 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 325
           + LTT E+  +I+   ++F  L +   D ++        ++   G +GG  E   R A +
Sbjct: 170 ATLTTRELAYMIKKAGIDFAKLPDGKRDSLMGESTGGATIF---GVTGGVMEAALRFAYE 226

Query: 326 TLFGKVIEGHLEFKTIRNSDFREVALE 352
            + GK  +   +FK +R  D  + A  
Sbjct: 227 AVTGKKPDS-WDFKAVRGLDGIKEATV 252
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]} Length = 365 Back     information, alignment and structure
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]} Length = 509 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
d3c8ya1 365 Fe-only hydrogenase, catalytic domain {Clostridium 100.0
d1hfel1312 Fe-only hydrogenase larger subunit, C-domain {Desu 100.0
d1y5ib1509 Respiratory nitrate reductase 1 beta chain {Escher 99.96
d1bc6a_77 Ferredoxin {Bacillus schlegelii [TaxId: 1484]} 97.46
d1h98a_77 Ferredoxin {Thermus thermophilus [TaxId: 274]} 97.3
d3c7bb165 DsrB insert domain {Archaeoglobus fulgidus [TaxId: 97.28
d1dura_55 Ferredoxin II {Peptostreptococcus asaccharolyticus 97.22
d7fd1a_106 Ferredoxin {Azotobacter vinelandii [TaxId: 354]} 97.13
d2fdna_55 Ferredoxin II {Clostridium acidurici [TaxId: 1556] 96.85
d1hfel285 Fe-only hydrogenase larger subunit, N-domain {Desu 96.55
d1hfel285 Fe-only hydrogenase larger subunit, N-domain {Desu 96.46
d1blua_80 Ferredoxin II {Chromatium vinosum [TaxId: 1049]} 96.28
d1blua_80 Ferredoxin II {Chromatium vinosum [TaxId: 1049]} 96.16
d1rgva_80 Ferredoxin II {Thauera aromatica [TaxId: 59405]} 96.15
d2fdna_55 Ferredoxin II {Clostridium acidurici [TaxId: 1556] 96.14
d3c8ya383 Fe-only hydrogenase, second domain {Clostridium pa 96.06
d1vlfn2195 Transhydroxylase beta subunit, BthL, N-terminal do 96.02
d1rgva_80 Ferredoxin II {Thauera aromatica [TaxId: 59405]} 95.87
d1vjwa_59 Ferredoxin A {Thermotoga maritima [TaxId: 2336]} 95.73
d1jnrb_149 Adenylylsulfate reductase B subunit {Archaeon Arch 95.59
d1dura_55 Ferredoxin II {Peptostreptococcus asaccharolyticus 95.53
d1sj1a_66 Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI 95.43
d3c8ya383 Fe-only hydrogenase, second domain {Clostridium pa 95.16
d2fug91154 NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus 95.15
d1xera_103 Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} 95.03
d1xera_103 Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} 95.03
d1fxra_64 Ferredoxin I {Sulfate-reducing bacteria (Desulfovi 94.87
d1kqfb1244 Formate dehydrogenase N, iron-sulfur (beta) subuni 94.58
d1jb0c_80 Photosystem I iron-sulfur protein PsaC {Synechococ 94.46
d1gtea5173 Dihydropyrimidine dehydrogenase, C-terminal domain 94.46
d1jb0c_80 Photosystem I iron-sulfur protein PsaC {Synechococ 94.45
d1bc6a_77 Ferredoxin {Bacillus schlegelii [TaxId: 1484]} 94.38
d1fxda_58 Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} 94.36
d2c42a5117 Pyruvate-ferredoxin oxidoreductase, PFOR, domain V 94.27
d1iqza_81 Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1 93.61
d2fug34151 NADH-quinone oxidoreductase chain 3, Nqo3, domain 93.18
d2v4jb169 DsrB insert domain {Desulfovibrio vulgaris [TaxId: 92.96
d2c42a5117 Pyruvate-ferredoxin oxidoreductase, PFOR, domain V 92.29
d1gtea5173 Dihydropyrimidine dehydrogenase, C-terminal domain 91.63
d2fug91154 NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus 91.41
d1h98a_77 Ferredoxin {Thermus thermophilus [TaxId: 274]} 91.31
d1jnrb_149 Adenylylsulfate reductase B subunit {Archaeon Arch 90.62
d1vjwa_59 Ferredoxin A {Thermotoga maritima [TaxId: 2336]} 90.32
d7fd1a_106 Ferredoxin {Azotobacter vinelandii [TaxId: 354]} 90.28
d2fug34151 NADH-quinone oxidoreductase chain 3, Nqo3, domain 86.75
d1fxra_64 Ferredoxin I {Sulfate-reducing bacteria (Desulfovi 86.37
d1fxda_58 Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} 85.41
d2bs2b1133 Fumarate reductase {Wolinella succinogenes [TaxId: 82.85
d1sj1a_66 Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI 82.81
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Fe-only hydrogenase
superfamily: Fe-only hydrogenase
family: Fe-only hydrogenase
domain: Fe-only hydrogenase, catalytic domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=100.00  E-value=1e-62  Score=485.58  Aligned_cols=250  Identities=33%  Similarity=0.581  Sum_probs=230.4

Q ss_pred             HHHHHHhhcCC-CeEEEEeCcchhhHHhhHhCCCh-HHHHHHHHHHHHHcCCeEEEechhHHHHHHHHHHHHHHHHHhhh
Q 017974           79 LDEFLSNINKG-KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS  156 (363)
Q Consensus        79 ~~~~~~~L~~~-k~~V~sisP~~~~sl~~~f~~~~-~~~~~~l~~~Lk~LGf~~V~Dta~~adi~~~e~~~ef~~~~~~~  156 (363)
                      ++++++.|+++ |.+||+||||+|+||+++||+++ ..+.++|..+||+|||++|+||++|||+++.|+++||++|+++ 
T Consensus         2 i~~v~~~l~~~~k~vV~siaP~~r~sla~~f~l~~~~~~~~kl~~~lk~LGF~~V~dt~~gad~~~~e~~~E~~~r~~~-   80 (365)
T d3c8ya1           2 MDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIEN-   80 (365)
T ss_dssp             HHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhCCCcEEEEEECcHHHHHHHHHhCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHHHHHHHhc-
Confidence            57899999875 67999999999999999999986 3467999999999999999999999999999999999999874 


Q ss_pred             ccCcccccCCCCCceecCChhHHHHHHhhcCCCccCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEEEEeccchhh
Q 017974          157 QESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL  236 (363)
Q Consensus       157 ~~~~~~~~~~~~PlisS~CPg~V~yiEk~~~p~Li~~Ls~v~SP~~i~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~  236 (363)
                              +..+|||||||||||+||||+| |+|+||||+++||||++|+++|++++++.|+++++|+|||||||+|||+
T Consensus        81 --------~~~~P~isS~CPg~V~yiEk~~-PeLip~ls~v~SP~~~~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~  151 (365)
T d3c8ya1          81 --------NGPFPMFTSCCPGWVRQAENYY-PELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKF  151 (365)
T ss_dssp             --------TCSCCEECCCCHHHHHHHHHHC-GGGGGGBCCBCCHHHHHHHHHTTHHHHTTCCCGGGEEEEEEESCSHHHH
T ss_pred             --------CCCCCeEEeCCHHHHHHHHHhC-hhhhccccCCCCHHHHHHHHHHHHHHHhcCCCcccEEEEEEecccchhh
Confidence                    5779999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhccccchhccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCccccCCCCcchHH
Q 017974          237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYA  316 (363)
Q Consensus       237 Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~l~~~~~~~~d~~~~~~s~~g~~~~~~~~SGG~~  316 (363)
                      ||.|+++...             +.++||+||||+||.+||++.+||+..+++.++|.++...++.|.+|+.   |||++
T Consensus       152 Ea~r~e~~~~-------------~~~dVD~VLT~~El~~~l~~~~i~~~~l~~~~~~~~~~~~s~~g~~~~~---sGG~~  215 (365)
T d3c8ya1         152 EADRPQMEKD-------------GLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFGA---TGGVM  215 (365)
T ss_dssp             HHTCTTSEET-------------TEESCSEEEEHHHHHHHHHHTTCCGGGCCCCCCCGGGTCCCHHHHTTTS---TTHHH
T ss_pred             hhcCcccccC-------------CCCCcCEEeeHHHHHHHHHHcCCChhhCCCcccCCccCCCCcccceeec---cccHH
Confidence            9999988532             2468999999999999999999999999999999888888888888887   99999


Q ss_pred             HHHHHHHHHHhcCCccccccceeeeeCC-CeEEEEEEecc
Q 017974          317 ETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVSF  355 (363)
Q Consensus       317 e~i~~~~~k~l~~~~i~~~l~~~~~rn~-d~~E~~l~~~~  355 (363)
                      +++++++.+.++|.++. .++++.+||. +++|++++.++
T Consensus       216 ~~~~~~~~~~~~~~~~~-~~~~~~~rg~~~i~~~~~~~~~  254 (365)
T d3c8ya1         216 EAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEINN  254 (365)
T ss_dssp             HHHHHHHHHHHHTCCCS-CCCCGGGCSSCSEEEEEEEETT
T ss_pred             HHHHHHHHHhccCCccc-cceeeeccCCCceEEEEEEeCC
Confidence            99999999999999985 7899999985 59999988763
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit, C-domain {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]} Back     information, alignment and structure
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} Back     information, alignment and structure
>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} Back     information, alignment and structure
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]} Back     information, alignment and structure
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]} Back     information, alignment and structure
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} Back     information, alignment and structure
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} Back     information, alignment and structure
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} Back     information, alignment and structure
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} Back     information, alignment and structure
>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Back     information, alignment and structure
>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]} Back     information, alignment and structure
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} Back     information, alignment and structure
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Back     information, alignment and structure
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Back     information, alignment and structure
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure