Citrus Sinensis ID: 017981

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MMNGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHccccHHHHHHHHHHHccccHHccccccEEEEcccccHHcccccccHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEcEEccccccccccccccEEEEEEEEEcccHHHHHHccccHHHccccccEEEccccEEEEEEcccccEEEEEEEcccccccccEEEEEEccccEEEEEEEcccccEEEEccccccEEEEEEccEEEcccccccHHHHHHHHHHHccccccEEEEEcccEEEEEcccccccccccccccccEEEEEEEccccHHHHHHHHcccccccEEEEcEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEccccEEccccEEEccEEEEEEEEcEEEcccccccccHcHEEEEEEEEEcccHHHHHHHHcccHHHHEEEEEccccccEEEEEEEccccEEEEEEEcccccccccccEEEEEcccEEEEEEEccccccEEEEcccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHccEEEEEccccEEEEcccccccccccccccccEEEEEEccccccHHHHHHHHHccccccEEEEccccc
Coil and Loop (DISEMBL)
mmngpstedrisclpnaiLCHILSFLPTKYAVATCVLSSTWKLVWtslpnlcfddrlCLEFQRNLDLSTVASTRFENFVHRVLLSAsgninkfslrccglvdssrLKLWVSFATMRNVREIEislnddecielphciytcKTLEVLKLDMnffiktpptiffpsAKILHVILNTIdnnfsdwlfskcpaledlsikgyiygtdsvtlnipslTLKRLRLEleapeedyiTKYKVIIrapnleqlyirdhgpglyvVHELHSLTKAVVDYGIEcildydspeDVAQAVVDMLRDIKNikslslssgtmfaldrldyandhsfptfpflnrlevegvgacgwlSLAHIFsrmpklesiVFEEVRM
Flexible Loop (DISEMBL)
MMNGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEislnddecieLPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTdsvtlnipslTLKRLRLELeapeedyitkYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNikslslssgTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHifsrmpklesivfeevrm
Low Complexity Region (SEG)
MMNGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNffiktpptiffpSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM
Disordered region (IsUnstruct)
**********ISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVF*****
Disordered Region (DISOPRED)
*****ST***ISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM
Disordered Region (DISEMBL)
*********RISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM
Disordered Region (DISPRO)
********DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEV**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMNGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q8L7H1	381	F-box/LRR-repeat protein	no	no	0.933	0.889	0.336	9e-35
Q94B46	468	F-box/LRR-repeat protein	no	no	0.933	0.724	0.321	1e-30
Q9LX51	520	F-box/LRR-repeat protein	no	no	0.928	0.648	0.318	2e-25
Q9FJ30	540	Putative F-box/LRR-repeat	no	no	0.939	0.631	0.295	7e-25
Q9LQC1	505	Putative F-box protein At	no	no	0.964	0.693	0.298	4e-24
P0C2G0	403	F-box/LRR-repeat protein	no	no	0.922	0.831	0.312	7e-24
Q1PED9	388	F-box/LRR-repeat protein	no	no	0.933	0.873	0.299	8e-24
Q9FNJ4	443	Putative F-box/FBD/LRR-re	no	no	0.928	0.760	0.297	1e-23
Q9M8U4	474	F-box/LRR-repeat protein	no	no	0.942	0.721	0.285	1e-22
Q9FZ52	449	F-box/FBD/LRR-repeat prot	no	no	0.900	0.728	0.284	2e-22

>sp|Q8L7H1|FBL75_ARATH F-box/LRR-repeat protein At4g14103 OS=Arabidopsis thaliana GN=At4g14103 PE=2 SV=1

 Score =  147 bits (372), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 185/374 (49%), Gaps = 35/374 (9%)

Query: 2   MNGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEF 61
           M+   + D IS LP+ I  HILSFLPTK A +T VLS  W+ ++  +PNL  DD + L  
Sbjct: 1   MDLSGSRDVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYL-- 58

Query: 62  QRNLDLSTVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVRE 120
             N +  T  ST F +FV RVL L  +  ++KFSL+    +D  R+  W++    R V +
Sbjct: 59  --NPENETEISTSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSD 116

Query: 121 IEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTI-----FFPSAKILHVILNTI 175
           +++ LN +    LP  +Y CKTL  LKL    +    PTI       P  K L++     
Sbjct: 117 LDLHLNLESEFLLPSQVYLCKTLVWLKLRFGLY----PTIDVEDVHLPKLKTLYIEATHF 172

Query: 176 DNNFSDW--LFSKCPALEDL---SIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYIT 230
           + +      L S CP LEDL    I  +I+  D  ++++P  TLKRLR   +  E D   
Sbjct: 173 EEHGVGLTKLLSGCPMLEDLVLDDISWFIW--DFASVSVP--TLKRLRFSWQ--ERDEFP 226

Query: 231 KYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGI--ECILDYD---SPEDVAQ 285
           K  V++  PNL  L   D   G Y    L SL +A +D  +    +++Y       D+  
Sbjct: 227 K-SVLLDTPNLVYLKFTDTVAGKYPKVNLDSLVEAHIDLRLLKPLLINYHQGYGENDMVG 285

Query: 286 AVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAH 345
              D +  I N+K+L LS+ T   L  L Y+ D + P F  L  L +E     GW S+  
Sbjct: 286 NATDFIMRICNVKTLYLSANT---LQVLTYSCD-AIPIFNNLTHLTIESNPRVGWQSVPG 341

Query: 346 IFSRMPKLESIVFE 359
           +    P LE+++F+
Sbjct: 342 LLKNSPNLETLIFQ 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096 OS=Arabidopsis thaliana GN=At4g14096 PE=2 SV=1

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 176/367 (47%), Gaps = 28/367 (7%)

Query: 2   MNGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEF 61
           M+     D IS LP AI CHILSFLPTK A +T VLS  W+ ++  +PNL  D+ + L  
Sbjct: 1   MDLSGCRDIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYL-- 58

Query: 62  QRNLDLSTVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVRE 120
             N +  T  S+ F +FV RVL L  +  ++KFSL+    V+  R+  W++    R V +
Sbjct: 59  --NPENETEVSSSFMDFVDRVLALQGNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSD 116

Query: 121 IEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFS 180
           +++ +  +     P  ++  KTL  LKL M + +     ++ P  K L+     ID+ + 
Sbjct: 117 LDLHVYMETEFVFPSEMFLSKTLVRLKL-MLYPLLEFEDVYLPKLKTLY-----IDSCYF 170

Query: 181 D-------WLFSKCPALEDLSIKGYIYGT-DSVTLNIPSLTLKRLRLELEAPEEDYITKY 232
           +        L S CP LEDL +    + T D  ++++P  TLKRL    +  +E      
Sbjct: 171 EKYGIGLTKLLSGCPILEDLVLDDIPWCTWDFASVSVP--TLKRLTFSTQVRDE---FPK 225

Query: 233 KVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLR 292
            V I  PNL  L   D   G Y      SL +A +D  +          D+     D + 
Sbjct: 226 SVSIDTPNLVYLKFTDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMVGNATDFIM 285

Query: 293 DIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPK 352
            I N+K+L LSS T   L  L Y+ D + P F  L  L +E     GW SL  +    P 
Sbjct: 286 RICNVKTLYLSSNT---LQVLTYSCD-AIPIFNNLTHLTIESNPEVGWQSLPGLLKNSPN 341

Query: 353 LESIVFE 359
           LE+++F+
Sbjct: 342 LETLIFQ 348

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 178/380 (46%), Gaps = 43/380 (11%)

Query: 7   TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLD 66
           + DRIS LPN ++ HILSFLPTK A +T VLS  W+ ++  + NL FDD    ++Q    
Sbjct: 5   SRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDS---DYQDGKP 61

Query: 67  LSTVASTR-FENFVHRVL-LSASGNINKFSLRCCGL-VDSSRLKLWVSFATMRNVREIEI 123
            S V  +R F  FV RVL L  +G++NKFSL C    VD +R+  W+     R V E+++
Sbjct: 62  KSDVELSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELDL 121

Query: 124 SLNDDECIELPHCIYTCKTLEVLKL----DMNFFIKTPPTIFFPSAKILHV-ILNTIDNN 178
           S+ +     LP  I+  KTL  LKL    D+   +     +F P  K L++  ++  +  
Sbjct: 122 SILE---YPLPSEIFVSKTLVRLKLGPANDLTLTLDR-KDVFLPKLKTLYIDCVDVQERG 177

Query: 179 FS-DWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIR 237
           F    L S CP LE+L +   I   +    ++   TLKRL       EE Y     V   
Sbjct: 178 FGFVKLLSGCPVLEELVLMN-IGWENWKFCSVSVKTLKRLTFFC---EETYENPKSVSFD 233

Query: 238 APNLEQLYIRDHGPGLYVVHELHSLTKAVV------------DYGIECILDYDSPEDVAQ 285
            PNL  L   D     Y     +SL +A +            D+  E   DY S  D  +
Sbjct: 234 TPNLVYLEYSDAIASKYPKVNFNSLVEAHIGLRLTEDQSGDADFSEE---DYFSEGDEKK 290

Query: 286 AVV----DMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWL 341
            +V    D L+ I  ++ L LS+    A++ L +  +   P F  L +L +E      W 
Sbjct: 291 QMVGNATDFLKGISTVQILYLSAQ---AIEVLTFCCE-PIPVFNNLIQLTIENNSEIRWD 346

Query: 342 SLAHIFSRMPKLESIVFEEV 361
           SL  +    P LE++V + +
Sbjct: 347 SLPGLLKNCPNLETLVLKRL 366

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 167/382 (43%), Gaps = 41/382 (10%)

Query: 9   DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLS 68
           DRIS LP+A++CHILSFLPTK A +T VL+  WK +   +PNL FDD +    +   +  
Sbjct: 14  DRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARRNKY 73

Query: 69  TVASTRFENFVHRVL-LSASGN--INKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISL 125
           + +   F +FV  VL L A     + +F ++C  +VD S +  W+     R V +I++ +
Sbjct: 74  SKSYESFMSFVDSVLALQAKTKTPLKRFHVKCEDVVDQSWVLEWIPKVLKRGVLDIDLHI 133

Query: 126 -------NDDECIELPHCIYTCKTLEVLKLDMN--FFIKTPPTIFFPSAKILHVILNTID 176
                   +     LP  I+  KTL  LK+       I     +  P  K LH+    I+
Sbjct: 134 TSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVEGGVSLPKLKTLHLDYFKIE 193

Query: 177 NNFSDWLFSKCPALEDLSIKGYIYGTDS------VTLNIPSLTLKRL------------- 217
            +  + L S C ALE+L +   ++   S      V+++IP  TLKRL             
Sbjct: 194 TSMLNKLLSGCHALEELVLANLMWADSSEDEACHVSVSIP--TLKRLNFCRSEDFYEGEF 251

Query: 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDY 277
               +  EE+      +    PNL  L   D     Y      SL +A  +  +    D 
Sbjct: 252 HFYEDYDEENINEGVSLSFDNPNLVYLEYSDVIVDKYKQVSFDSLVEA--NLRLRKTPDQ 309

Query: 278 DSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA 337
           D  + V   V  +L  I N+K L LS  T+  L           P F  L  L ++    
Sbjct: 310 DETDKV--NVTKLLMGIHNVKILYLSDDTLEVLS----CCRERIPVFDNLLELTIKTTPY 363

Query: 338 CGWLSLAHIFSRMPKLESIVFE 359
            GW SL  +    P LE++VFE
Sbjct: 364 VGWKSLPPLLKSCPSLETLVFE 385

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQC1|FB65_ARATH Putative F-box protein At1g58310 OS=Arabidopsis thaliana GN=At1g58310 PE=4 SV=2

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 184/385 (47%), Gaps = 35/385 (9%)

Query: 2   MNGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEF 61
           M+   + D IS LP+++LCHILSFL TK A +T VL+  W+ ++ S+PNL FDD + L  
Sbjct: 1   MDFGRSRDIISGLPDSLLCHILSFLNTKEAASTSVLAKKWRYLFASVPNLDFDDSVHLRL 60

Query: 62  -QRNL------------DLSTVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLK 107
            +RN             + S   ST F +FV +VL L  +  ++KFSL+    VD  R+ 
Sbjct: 61  GKRNPAVSGEDYLKMINERSDQLSTSFMDFVDQVLRLQDNSPLHKFSLKIRDCVDIVRII 120

Query: 108 LWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNF--FIKTPPTIFFPSA 165
            W+     R V ++E+ ++      LP  I+  +TL  LKL +    FI     +  P  
Sbjct: 121 CWILKVLERGVSDLELDMHLKWKSSLPSKIFLSETLVRLKLSVERGPFIDV-EDVHLPKL 179

Query: 166 KILHVILNTIDNNFS--DWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEA 223
           K LH++    + +    + L S C  LE+L+++ YI       +++   TLKRL    E 
Sbjct: 180 KTLHIVSVKFEKHGIGLNKLLSGCHILEELNLE-YISWCLWDFVSVSLTTLKRLTFCGEV 238

Query: 224 PEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDY-----GIECILDYD 278
            +++      V    PNL  L   D     Y      SL +A ++       +E     D
Sbjct: 239 MQDE--NPISVSFNTPNLVYLMFTDAIADEYSTVNFDSLVEAHINLQMSEDQVEQTRFSD 296

Query: 279 SPEDVAQAVV----DMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEG 334
           S  ++   +V    +++  I N+K L LS   ++ L+ L Y  + + P F  L  L +E 
Sbjct: 297 SEGNMEGCMVANATELIMGICNVKILYLS---VYTLEVLTYCCE-AIPLFNNLTHLTIES 352

Query: 335 VGACGWLSLAHIFSRMPKLESIVFE 359
               GW S++ +    P LE++VF+
Sbjct: 353 NSEVGWESVSGLLKNSPNLETLVFK 377

Arabidopsis thaliana (taxid: 3702)

>sp|P0C2G0|FBL27_ARATH F-box/LRR-repeat protein At1g06630 OS=Arabidopsis thaliana GN=At1g06630 PE=2 SV=1

 Score =  111 bits (278), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 165/371 (44%), Gaps = 36/371 (9%)

Query: 3   NGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQ 62
            GP   D I+ LP+ IL  ILS L TK AV+T VLS  W+ ++  +  L FDD +    +
Sbjct: 8   TGP--RDAINWLPDEILGKILSLLATKQAVSTSVLSKKWRTLFKLVDTLEFDDSVSGMGE 65

Query: 63  RNLDLSTVASTRFENFVHR-VLLSASGNINKFSLRC-CGLVDSSR---LKLWVSFATMRN 117
           +  + S V    F++ V R V L     I K SL+C  G  D  R   +  W+S    R 
Sbjct: 66  Q--EASYVFPESFKDLVDRTVALQCDYPIRKLSLKCHVGRDDEQRKACVGRWISNVVGRG 123

Query: 118 VREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFI-KTPPTIFFPSAKIL--HVILNT 174
           V E+ + +ND     L   + TCKTL  L L    F+ K P  +  PS K L  H +   
Sbjct: 124 VSEVVLRINDRGLHFLSPQLLTCKTLVKLTLGTRLFLGKLPSYVSLPSLKFLFIHSVFFD 183

Query: 175 IDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKV 234
                S+ L + CP +E L +       +S+   I S TLKRL +  E   E  I+    
Sbjct: 184 DFGELSNVLLAGCPVVEALYLN---QNGESMPYTISSPTLKRLSVHYEYHFESVIS---- 236

Query: 235 IIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQA-VVDMLRD 293
               PNLE L   D+    Y    L SL        +E  L+ D  E V    V  ++  
Sbjct: 237 -FDLPNLEYLDYSDYALYGYPQVNLESL--------VEAYLNLDKAEHVESPDVTKLIMG 287

Query: 294 IKNIKSLSLSS---GTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRM 350
           I+N++ LSLS    G +++  +         P F  L  L         W  LA I  + 
Sbjct: 288 IRNVEILSLSPDSVGVIYSCCKYGLL----LPVFNNLVSLSFGTKKTRAWKLLADILKQS 343

Query: 351 PKLESIVFEEV 361
           PKLE+++ E++
Sbjct: 344 PKLETLIIEDL 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PED9|FBL63_ARATH F-box/LRR-repeat protein At3g59190 OS=Arabidopsis thaliana GN=At3g59190 PE=2 SV=1

 Score =  111 bits (278), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 172/377 (45%), Gaps = 38/377 (10%)

Query: 6   STEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFD----DRLCLEF 61
            ++D IS LP+A+LCH+LSFLPT  A +T VL+  W+ +   +PNL  D    DR  +  
Sbjct: 9   GSKDIISNLPDALLCHVLSFLPTTEAASTSVLAKRWRFLLAFVPNLDLDNMIYDRPKMGR 68

Query: 62  QRNLDLSTVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVRE 120
           ++ L+L       F+ FV RV+ L  +  + KFSLRC    D SR+  WV     R V E
Sbjct: 69  RKRLEL----RKSFKLFVDRVMALQGNAPLKKFSLRCKIGSDPSRVNGWVLKVLDRGVEE 124

Query: 121 IEISLNDDECIELPHCIYTCKTLEVLKLD-MNFFIKTPPTIFFPSAKILHVILNTIDNNF 179
           +++ +  +    LP  +   KTL  LK+   + F       F P  K LH  L+ I  +F
Sbjct: 125 LDLYIASEYEYPLPPKVLMTKTLVSLKVSGTDEFTIDVGEFFLPKLKTLH--LSAI--SF 180

Query: 180 SD-------WLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKY 232
            D        L S C ALE+L +   ++       ++ S +LKR+ ++ E  +E+     
Sbjct: 181 GDEGGPPFAKLISACHALEELVMIKMMWDYWEFC-SVSSPSLKRVSIDCENIDEN---PK 236

Query: 233 KVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDV--------- 283
            V    PNL  L   D     Y      SL +A +   +     +D+ + V         
Sbjct: 237 SVSFDTPNLVYLEFTDTVAVKYPKVNFDSLVEASIGLRMTPDQVFDARDLVNRHHGYKRC 296

Query: 284 -AQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLS 342
                 D +  + N+K++ LSS    AL+ L +    + P F  L  L VE      W S
Sbjct: 297 KGANAADFMMGVCNVKTMYLSSE---ALEVLTFCCKKAIPVFNNLIHLTVETDERVDWES 353

Query: 343 LAHIFSRMPKLESIVFE 359
           L  +    P LE+++FE
Sbjct: 354 LPILLKNCPNLETLIFE 370

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNJ4|FDL32_ARATH Putative F-box/FBD/LRR-repeat protein At5g22670 OS=Arabidopsis thaliana GN=At5g22670 PE=4 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 169/366 (46%), Gaps = 29/366 (7%)

Query: 4   GPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQR 63
           G +++D IS LP+ +LC ILS LPTK AV T VLS  WK    S+P L F+     EF  
Sbjct: 6   GVTSQDSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEFN---VSEFHG 62

Query: 64  NLDLSTVA----STRFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVR 119
             + + V      T  E  +H++ L+     +          D S L  W+  A  R V+
Sbjct: 63  YYEFARVVHGFLDTSRETCIHKLKLAFEKKQH----------DRSYLTQWIHNAVKRKVQ 112

Query: 120 EIEISLNDDECIEL-PHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNN 178
            ++I        EL PH +YTC+TL  L+L  N  +     +  P  K +H+I N   N+
Sbjct: 113 HLDIGRWSYLGQELIPHSLYTCETLVSLRLH-NVSLPDFDHVSLPRLKTMHLIDNIYPND 171

Query: 179 -FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYIT--KYKVI 235
              + L S CP LEDL++   +     V L + SL+LK L L L+      I    ++V+
Sbjct: 172 ALLENLISSCPVLEDLNVSRDVENIVKV-LRVRSLSLKSLILALDGDRYGDIEDDSWEVV 230

Query: 236 IRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVV-DMLRDI 294
           I AP L  L +RD     +V+  + S  K  +D   + +        + ++VV +    +
Sbjct: 231 IDAPRLSYLSLRDDQSKSFVLSSVTSPAKVDIDVTFDVVRSVLKNFLLTRSVVRNFFTRL 290

Query: 295 KNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWL-SLAHIFSRMPKL 353
            +++ +++S  T+  L R  Y      P FP  N ++   V     L  L +     P L
Sbjct: 291 SSVRDMTMSGTTLKVLSR--YMRHEPLPQFP--NMIQFYAVFCNSDLEKLPNFLESCPNL 346

Query: 354 ESIVFE 359
           +S+V E
Sbjct: 347 KSLVLE 352

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8U4|FBL41_ARATH F-box/LRR-repeat protein At3g03030 OS=Arabidopsis thaliana GN=At3g03030 PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 166/371 (44%), Gaps = 29/371 (7%)

Query: 9   DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLS 68
           D +S LP+ + CHILSFL TK +  T VLS  W+ ++T +PNL  DD   L  +      
Sbjct: 2   DLVSSLPDDVRCHILSFLTTKESALTSVLSKKWRNLFTLVPNLDLDDSEYLHPEETKWER 61

Query: 69  TVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLND 127
                 F +FV RVL L  +G I +FSLRC   V  +RL  W+     R V ++E+ ++ 
Sbjct: 62  EEILDSFLDFVERVLSLQGNGPIRRFSLRCESGVPPARLNRWLCKVLQRGVADLELIIDF 121

Query: 128 DECIELPHCIYTCKTLEVLKLDMNF----FIKTPPTIFFPSAKILHVILNTIDNNFSDWL 183
           ++   LP  ++  +TL  L+L   F    +       F P  + L +    +   F D  
Sbjct: 122 EDGYLLPRELFVSETLVNLRLKSEFGCIHWWPGAEGTFLPRLQSLDISSAMV---FCDDK 178

Query: 184 FSKC----PALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAP 239
             K     P +E+L + G  +    VT++  +LT  +L L           K  V    P
Sbjct: 179 LQKLLPCFPVIEELRLVGMEWIDSHVTVSCATLT-NQLLLSSTGSRTSKNPK-SVSFDTP 236

Query: 240 NLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIE--------CILDYDSPEDVAQA---VV 288
           NL  L   D     Y +  + SL KA +  G++           +Y S +DV +    VV
Sbjct: 237 NLLSLAYSDLVAEDYPLVNMKSLFKARIILGVDDDQIARMRAPTNYLSEDDVVRRFGNVV 296

Query: 289 DMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS 348
            +++ I+N++ L L S T+  L         S P F  +  L ++     GW ++  +  
Sbjct: 297 KLMKGIQNVQQLHLHSDTLEVLSMC----CESMPVFNNVKTLGIKSDYDRGWQAVPALLR 352

Query: 349 RMPKLESIVFE 359
             P LE++ FE
Sbjct: 353 NCPHLETLTFE 363

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ52|FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana GN=At1g16930 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 167/365 (45%), Gaps = 38/365 (10%)

Query: 9   DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLS 68
           DRIS LP+++LC ILS L TK +V T VLS  W+ +W  +P L  D         N    
Sbjct: 15  DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLD-------SNNFPDD 67

Query: 69  TVASTRFENFVHRVLLSASGNINKFSLRCCGLV------DSSRLKLWVSFATMRNVREIE 122
            V    F +FV+R L    G+ N+  L    L+      D+SR K W++    R V    
Sbjct: 68  DV----FVSFVNRFL----GSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVCHFN 119

Query: 123 ISL---NDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNF 179
           +     +DDE +++P  +Y+C+ L  L+L     +  P ++  P  KI+H+ +   D + 
Sbjct: 120 VHNEVDDDDELVKMPLSLYSCERLVNLQL-YRVALDHPESVSLPCVKIMHLDMVKYDADS 178

Query: 180 S-DWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRA 238
           + + L S CP LE+L+I      +  V   + S +LK  +++ E  E      + V I A
Sbjct: 179 TLEILISGCPVLEELTIVRDPNDSLEVVC-VRSQSLKSFKIDSERYES---QNHVVTIDA 234

Query: 239 PNLEQLYIRDHGPGLYVVHELHSLTKAVVD--YGIECILDYDSPEDVAQAVV--DMLRDI 294
           P LE + + DH    +++H +    K  +D  + +E   D   P+D ++  +    L  +
Sbjct: 235 PRLEYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNVE-YNDPLEPDDSSKIAMLGKFLTGL 293

Query: 295 KNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLE 354
             +  + +SS T+  +   DY      P F  L+RL         W  L       P L 
Sbjct: 294 STVSEMVISSDTLQVIH--DYCKMEQLPQFSNLSRLHA-YFEDTWWEMLPTFLESFPNLH 350

Query: 355 SIVFE 359
           S+V E
Sbjct: 351 SLVME 355

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
147812093	607	hypothetical protein VITISV_040899 [Viti	0.953	0.570	0.360	4e-41
296086770	411	unnamed protein product [Vitis vinifera]	0.837	0.739	0.353	2e-34
334186507	443	F-box/LRR-repeat protein [Arabidopsis th	0.944	0.774	0.333	1e-33
296086764	348	unnamed protein product [Vitis vinifera]	0.895	0.933	0.338	3e-33
18414142	381	F-box/LRR-repeat protein [Arabidopsis th	0.933	0.889	0.336	6e-33
18414140	468	F-box/LRR-repeat protein [Arabidopsis th	0.933	0.724	0.321	9e-29
224114976	462	predicted protein [Populus trichocarpa]	0.931	0.731	0.330	1e-27
2244765	1047	hypothetical protein [Arabidopsis thalia	0.887	0.307	0.318	9e-27
15231646	520	F-box/LRR-repeat protein [Arabidopsis th	0.928	0.648	0.318	1e-23
15238204	540	putative F-box/LRR-repeat protein [Arabi	0.939	0.631	0.295	4e-23

>gi|147812093|emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 190/366 (51%), Gaps = 20/366 (5%)

Query: 7   TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLD 66
           + D IS LP+ +LCHILSFLPTK+AV T +LS  W+ +W S+P L FDD L L     ++
Sbjct: 8   SRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVE 67

Query: 67  LSTVASTRFENFVHRVLL-SASGNINKFSLRCCGLVDSS--RLKLWVSFATMRNVREIEI 123
           L       F+NFV  VL  S    I KF L   G  D++   +  W+  A  R V+E+++
Sbjct: 68  LEE-RIIMFQNFVDGVLRHSEVSCIKKFRL---GYRDNNLDSVYSWICIALERRVQELDL 123

Query: 124 SLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVI-LNTIDNNFSDW 182
            L  D  +ELP   + CKTL V+KL    F+  P T++ PS K LH+  +   D++    
Sbjct: 124 HLLIDWRVELPPMFFICKTLVVVKLSCALFLDIPTTVWLPSLKALHLKSVEYSDDDSIQK 183

Query: 183 LFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRL-----ELEAPEEDYITKYKVIIR 237
           L S CP LE+L I+        V +N+ + +LK LR+         P E     YKV++ 
Sbjct: 184 LLSGCPVLEELVIEREERDNQWV-VNVSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVD 242

Query: 238 APNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQA----VVDMLRD 293
           APNLE L I D+    Y V +L SL KA +D   +     +SP +   +    + ++L  
Sbjct: 243 APNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLGR 302

Query: 294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKL 353
           I N+K LSL+  T+ +L       D+  PTF  + RLE   +G   W  L +     P L
Sbjct: 303 ISNVKCLSLTGVTLDSLS--GTIGDYKLPTFHNMTRLEFLFIGGFNWDFLPNFLHSSPNL 360

Query: 354 ESIVFE 359
           E++V E
Sbjct: 361 EALVIE 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086770|emb|CBI32919.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 174/356 (48%), Gaps = 52/356 (14%)

Query: 7   TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLD 66
           + DRIS LP+A+LCHI+SFLPTK+AV T VLS  W+ +W S+PNL FDD L L+  + + 
Sbjct: 8   SRDRISNLPDAVLCHIISFLPTKFAVGTSVLSKRWRYLWASIPNLDFDDDLLLDRDKPIG 67

Query: 67  LSTVASTRFENFVHRVLLSAS-GNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISL 125
            S   S  F+NFV +VLL  S   I KF L+C      S +  W+  A  RNV+E+++  
Sbjct: 68  DSE-RSICFKNFVDKVLLHGSISCIRKFRLKCSDHELDSAVNSWICTALERNVQELDLYF 126

Query: 126 NDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFS 185
           + +  IELP   + CKTL VLKL                                     
Sbjct: 127 DTEYPIELPPKFFFCKTLVVLKL------------------------------------- 149

Query: 186 KCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLY 245
            CP LE+L I+ +      V  N+ + TLK L +        Y +KYK+++ APNLE L 
Sbjct: 150 -CPVLEELVIERWRLDEQWV-FNVSAPTLKSLAI--------YFSKYKLVVDAPNLEYLS 199

Query: 246 IRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSG 305
           I D     Y++  L SL KA V+ G   I   D        + ++LR I N+K LSLS  
Sbjct: 200 ITDFVSEDYLMSNLSSLVKAYVNVG-PTIRGIDDQILYRGRIYELLRGISNVKHLSLSGE 258

Query: 306 TMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEV 361
           T+ +L  +     +  P F  + RLE+E     G   L       P LE ++ E V
Sbjct: 259 TLHSLSGMFCG--YELPAFHSVTRLELEVDYGYGLEFLKEFLDTSPNLEILILENV 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186507|ref|NP_001190724.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|332657973|gb|AEE83373.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 188/378 (49%), Gaps = 35/378 (9%)

Query: 2   MNGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEF 61
           M+   + D IS LP+ I  HILSFLPTK A +T VLS  W+ ++  +PNL  DD + L  
Sbjct: 1   MDLSGSRDVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYL-- 58

Query: 62  QRNLDLSTVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVRE 120
             N +  T  ST F +FV RVL L  +  ++KFSL+    +D  R+  W++    R V +
Sbjct: 59  --NPENETEISTSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSD 116

Query: 121 IEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTI-----FFPSAKILHVILNTI 175
           +++ LN +    LP  +Y CKTL  LKL    +    PTI       P  K L++     
Sbjct: 117 LDLHLNLESEFLLPSQVYLCKTLVWLKLRFGLY----PTIDVEDVHLPKLKTLYIEATHF 172

Query: 176 DNNFSDW--LFSKCPALEDL---SIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYIT 230
           + +      L S CP LEDL    I  +I+  D  ++++P  TLKRLR   +  E D   
Sbjct: 173 EEHGVGLTKLLSGCPMLEDLVLDDISWFIW--DFASVSVP--TLKRLRFSWQ--ERDEFP 226

Query: 231 KYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGI--ECILDYD---SPEDVAQ 285
           K  V++  PNL  L   D   G Y    L SL +A +D  +    +++Y       D+  
Sbjct: 227 K-SVLLDTPNLVYLKFTDTVAGKYPKVNLDSLVEAHIDLRLLKPLLINYHQGYGENDMVG 285

Query: 286 AVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAH 345
              D +  I N+K+L LS+ T   L  L Y+ D + P F  L  L +E     GW S+  
Sbjct: 286 NATDFIMRICNVKTLYLSANT---LQVLTYSCD-AIPIFNNLTHLTIESNPRVGWQSVPG 341

Query: 346 IFSRMPKLESIVFEEVRM 363
           +    P LE+++F+ +++
Sbjct: 342 LLKNSPNLETLIFQVIKI 359

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086764|emb|CBI32913.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 176/366 (48%), Gaps = 41/366 (11%)

Query: 7   TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLD 66
           + D IS LP+ +LCHILSFLPTK+AV T +LS  W+ +W S+P L FDD L L     ++
Sbjct: 8   SRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVE 67

Query: 67  LSTVASTRFENFVHRVLL-SASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISL 125
           L       F+NFV  VL  S    I KF L   G  D++                     
Sbjct: 68  LEE-RIIMFQNFVDGVLRHSEVSCIKKFRL---GYRDNNL-------------------- 103

Query: 126 NDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHV-ILNTIDNNFSDWLF 184
            D+  +ELP   + CKTL V+KL    F+  P T++ PS K LH+  +   D++    L 
Sbjct: 104 -DNWGVELPPMFFICKTLVVVKLSCALFLDIPTTVWLPSLKALHLKSVEYSDDDSIQKLL 162

Query: 185 SKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRL-----ELEAPEEDYITKYKVIIRAP 239
           S CP LE+L I+        V +N+ + +LK LR+         P E     YKV++ AP
Sbjct: 163 SGCPVLEELVIEREERDNQWV-VNVSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAP 221

Query: 240 NLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVA----QAVVDMLRDIK 295
           NLE L I D+    Y V +L SL KA +D   +     +SP +        + ++L  I 
Sbjct: 222 NLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLGRIS 281

Query: 296 NIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLES 355
           N+K LSL+  T+     + +      PTF  +  LE   +G   W  L +     P LE+
Sbjct: 282 NVKCLSLTGVTL----DVSFLCPPILPTFHNMTCLEFLFIGGFNWDFLPNFLHSSPNLEA 337

Query: 356 IVFEEV 361
           +V E V
Sbjct: 338 LVIETV 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414142|ref|NP_567422.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75245750|sp|Q8L7H1.1|FBL75_ARATH RecName: Full=F-box/LRR-repeat protein At4g14103 gi|22136642|gb|AAM91640.1| unknown protein [Arabidopsis thaliana] gi|332657972|gb|AEE83372.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 185/374 (49%), Gaps = 35/374 (9%)

Query: 2   MNGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEF 61
           M+   + D IS LP+ I  HILSFLPTK A +T VLS  W+ ++  +PNL  DD + L  
Sbjct: 1   MDLSGSRDVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYL-- 58

Query: 62  QRNLDLSTVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVRE 120
             N +  T  ST F +FV RVL L  +  ++KFSL+    +D  R+  W++    R V +
Sbjct: 59  --NPENETEISTSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSD 116

Query: 121 IEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTI-----FFPSAKILHVILNTI 175
           +++ LN +    LP  +Y CKTL  LKL    +    PTI       P  K L++     
Sbjct: 117 LDLHLNLESEFLLPSQVYLCKTLVWLKLRFGLY----PTIDVEDVHLPKLKTLYIEATHF 172

Query: 176 DNNFSDW--LFSKCPALEDL---SIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYIT 230
           + +      L S CP LEDL    I  +I+  D  ++++P  TLKRLR   +  E D   
Sbjct: 173 EEHGVGLTKLLSGCPMLEDLVLDDISWFIW--DFASVSVP--TLKRLRFSWQ--ERDEFP 226

Query: 231 KYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGI--ECILDYD---SPEDVAQ 285
           K  V++  PNL  L   D   G Y    L SL +A +D  +    +++Y       D+  
Sbjct: 227 K-SVLLDTPNLVYLKFTDTVAGKYPKVNLDSLVEAHIDLRLLKPLLINYHQGYGENDMVG 285

Query: 286 AVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAH 345
              D +  I N+K+L LS+ T   L  L Y+ D + P F  L  L +E     GW S+  
Sbjct: 286 NATDFIMRICNVKTLYLSANT---LQVLTYSCD-AIPIFNNLTHLTIESNPRVGWQSVPG 341

Query: 346 IFSRMPKLESIVFE 359
           +    P LE+++F+
Sbjct: 342 LLKNSPNLETLIFQ 355

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414140|ref|NP_567421.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75249810|sp|Q94B46.1|FBL74_ARATH RecName: Full=F-box/LRR-repeat protein At4g14096 gi|14596145|gb|AAK68800.1| Unknown protein [Arabidopsis thaliana] gi|22136112|gb|AAM91134.1| unknown protein [Arabidopsis thaliana] gi|332657971|gb|AEE83371.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 176/367 (47%), Gaps = 28/367 (7%)

Query: 2   MNGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEF 61
           M+     D IS LP AI CHILSFLPTK A +T VLS  W+ ++  +PNL  D+ + L  
Sbjct: 1   MDLSGCRDIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYL-- 58

Query: 62  QRNLDLSTVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVRE 120
             N +  T  S+ F +FV RVL L  +  ++KFSL+    V+  R+  W++    R V +
Sbjct: 59  --NPENETEVSSSFMDFVDRVLALQGNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSD 116

Query: 121 IEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFS 180
           +++ +  +     P  ++  KTL  LKL M + +     ++ P  K L+     ID+ + 
Sbjct: 117 LDLHVYMETEFVFPSEMFLSKTLVRLKL-MLYPLLEFEDVYLPKLKTLY-----IDSCYF 170

Query: 181 D-------WLFSKCPALEDLSIKGYIYGT-DSVTLNIPSLTLKRLRLELEAPEEDYITKY 232
           +        L S CP LEDL +    + T D  ++++P  TLKRL    +  +E      
Sbjct: 171 EKYGIGLTKLLSGCPILEDLVLDDIPWCTWDFASVSVP--TLKRLTFSTQVRDE---FPK 225

Query: 233 KVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLR 292
            V I  PNL  L   D   G Y      SL +A +D  +          D+     D + 
Sbjct: 226 SVSIDTPNLVYLKFTDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMVGNATDFIM 285

Query: 293 DIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPK 352
            I N+K+L LSS T   L  L Y+ D + P F  L  L +E     GW SL  +    P 
Sbjct: 286 RICNVKTLYLSSNT---LQVLTYSCD-AIPIFNNLTHLTIESNPEVGWQSLPGLLKNSPN 341

Query: 353 LESIVFE 359
           LE+++F+
Sbjct: 342 LETLIFQ 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114976|ref|XP_002316907.1| predicted protein [Populus trichocarpa] gi|222859972|gb|EEE97519.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 176/369 (47%), Gaps = 31/369 (8%)

Query: 8   EDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDL 67
           +D IS LPN I+ HILSFLPTK A+ TC+LS +W+ +W SL N  FDDR           
Sbjct: 15  KDMISDLPNVIIGHILSFLPTKDALCTCILSKSWRELWRSLSNFDFDDR----------- 63

Query: 68  STVASTRFENFVHRVLL---SASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEIS 124
           +  +   F NF+ R      S   +I KF LR  G   SSR+  W+S A   N+ E+++ 
Sbjct: 64  TWKSKIIFGNFMDRFCYLHNSRENSITKFRLRVNGSYPSSRMSAWISAAIKDNLEELKLW 123

Query: 125 LNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPT-IFFPSAKILHVI-LNTIDNNFS-D 181
           +   + + LP  I++C+ L +L L     I      + FP  K+LH+  L  +D++ S +
Sbjct: 124 IYTADHVPLPRRIFSCEKLVILDLGYRIDIDLLGVGVHFPCLKVLHLQELPMLDDHASIE 183

Query: 182 WLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRL--RLELEAPEEDYITKYKVIIRAP 239
            L +  P LE+L I+     + +V L I S +LKRL  R    A +E      ++ +  P
Sbjct: 184 KLLAGSPVLEELKIEHEDCESRNV-LRICSSSLKRLIIRFPFVAYDEKDPGCRELTLDTP 242

Query: 240 NLEQLYIRDH-GPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNI- 297
           NLE L + D     L ++   +SL +A +    + +      +D     V +LR I  I 
Sbjct: 243 NLELLKLTDLVSEKLNMLQIPYSLVEAALSVAYKHVFTIQV-DDYIDMAVQLLRPIMTIV 301

Query: 298 KSLSLSSGTMFA--LDRLDYANDH------SFPTFPFLNRLEVEGVGACGWLSLAHIFSR 349
           K L L   TM    L  L  A         + P F  L RLE+E  G   WL L  I   
Sbjct: 302 KILRLCDTTMRTSPLQTLSDAVHKKLPCVGNLPDFQNLTRLEIEASGNDRWLVLHEILKC 361

Query: 350 MPKLESIVF 358
            PKLE  + 
Sbjct: 362 SPKLEVFIL 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2244765|emb|CAB10188.1| hypothetical protein [Arabidopsis thaliana] gi|7268114|emb|CAB78451.1| hypothetical protein [Arabidopsis thaliana]

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 172/367 (46%), Gaps = 45/367 (12%)

Query: 2   MNGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEF 61
           M+     D IS LP AI CHILSFLPTK A +T VLS  W+ ++  +PNL  D+ + L  
Sbjct: 256 MDLSGCRDIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYL-- 313

Query: 62  QRNLDLSTVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVRE 120
             N +  T  S+ F +FV RVL L  +  ++KFSL+    V+  R+  W++    R V +
Sbjct: 314 --NPENETEVSSSFMDFVDRVLALQGNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSD 371

Query: 121 IEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFS 180
           +++ +  +     P  ++  KTL  LKL M + +     ++ P  K L+     ID+ + 
Sbjct: 372 LDLHVYMETEFVFPSEMFLSKTLVRLKL-MLYPLLEFEDVYLPKLKTLY-----IDSCYF 425

Query: 181 D-------WLFSKCPALEDLSIKGYIYGT-DSVTLNIPSLTLKRLRLELEAPEEDYITKY 232
           +        L S CP LEDL +    + T D  ++++P  TLKRL    +  +E      
Sbjct: 426 EKYGIGLTKLLSGCPILEDLVLDDIPWCTWDFASVSVP--TLKRLTFSTQVRDE---FPK 480

Query: 233 KVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLR 292
            V I  PNL  L   D   G Y         K    YG           D+     D + 
Sbjct: 481 SVSIDTPNLVYLKFTDTVAGKY--------PKGHQGYG---------ENDMVGNATDFIM 523

Query: 293 DIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPK 352
            I N+K+L LSS T   L  L Y+ D + P F  L  L +E     GW SL  +    P 
Sbjct: 524 RICNVKTLYLSSNT---LQVLTYSCD-AIPIFNNLTHLTIESNPEVGWQSLPGLLKNSPN 579

Query: 353 LESIVFE 359
           LE+++F+
Sbjct: 580 LETLIFQ 586

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231646|ref|NP_191479.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75264308|sp|Q9LX51.1|FBL64_ARATH RecName: Full=F-box/LRR-repeat protein At3g59200 gi|7801670|emb|CAB91590.1| putative protein [Arabidopsis thaliana] gi|26450835|dbj|BAC42525.1| unknown protein [Arabidopsis thaliana] gi|29028916|gb|AAO64837.1| At3g59200 [Arabidopsis thaliana] gi|332646367|gb|AEE79888.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 178/380 (46%), Gaps = 43/380 (11%)

Query: 7   TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLD 66
           + DRIS LPN ++ HILSFLPTK A +T VLS  W+ ++  + NL FDD    ++Q    
Sbjct: 5   SRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDS---DYQDGKP 61

Query: 67  LSTVASTR-FENFVHRVL-LSASGNINKFSLRCCGL-VDSSRLKLWVSFATMRNVREIEI 123
            S V  +R F  FV RVL L  +G++NKFSL C    VD +R+  W+     R V E+++
Sbjct: 62  KSDVELSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELDL 121

Query: 124 SLNDDECIELPHCIYTCKTLEVLKL----DMNFFIKTPPTIFFPSAKILHV-ILNTIDNN 178
           S+ +     LP  I+  KTL  LKL    D+   +     +F P  K L++  ++  +  
Sbjct: 122 SILE---YPLPSEIFVSKTLVRLKLGPANDLTLTLDR-KDVFLPKLKTLYIDCVDVQERG 177

Query: 179 FS-DWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIR 237
           F    L S CP LE+L +   I   +    ++   TLKRL       EE Y     V   
Sbjct: 178 FGFVKLLSGCPVLEELVLMN-IGWENWKFCSVSVKTLKRLTFFC---EETYENPKSVSFD 233

Query: 238 APNLEQLYIRDHGPGLYVVHELHSLTKAVV------------DYGIECILDYDSPEDVAQ 285
            PNL  L   D     Y     +SL +A +            D+  E   DY S  D  +
Sbjct: 234 TPNLVYLEYSDAIASKYPKVNFNSLVEAHIGLRLTEDQSGDADFSEE---DYFSEGDEKK 290

Query: 286 AVV----DMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWL 341
            +V    D L+ I  ++ L LS+    A++ L +  +   P F  L +L +E      W 
Sbjct: 291 QMVGNATDFLKGISTVQILYLSAQ---AIEVLTFCCE-PIPVFNNLIQLTIENNSEIRWD 346

Query: 342 SLAHIFSRMPKLESIVFEEV 361
           SL  +    P LE++V + +
Sbjct: 347 SLPGLLKNCPNLETLVLKRL 366

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238204|ref|NP_198999.1| putative F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75262537|sp|Q9FJ30.1|FBL88_ARATH RecName: Full=Putative F-box/LRR-repeat protein At5g41840 gi|10177368|dbj|BAB10659.1| unnamed protein product [Arabidopsis thaliana] gi|332007352|gb|AED94735.1| putative F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 167/382 (43%), Gaps = 41/382 (10%)

Query: 9   DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLS 68
           DRIS LP+A++CHILSFLPTK A +T VL+  WK +   +PNL FDD +    +   +  
Sbjct: 14  DRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARRNKY 73

Query: 69  TVASTRFENFVHRVL-LSASGN--INKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISL 125
           + +   F +FV  VL L A     + +F ++C  +VD S +  W+     R V +I++ +
Sbjct: 74  SKSYESFMSFVDSVLALQAKTKTPLKRFHVKCEDVVDQSWVLEWIPKVLKRGVLDIDLHI 133

Query: 126 -------NDDECIELPHCIYTCKTLEVLKLDMN--FFIKTPPTIFFPSAKILHVILNTID 176
                   +     LP  I+  KTL  LK+       I     +  P  K LH+    I+
Sbjct: 134 TSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVEGGVSLPKLKTLHLDYFKIE 193

Query: 177 NNFSDWLFSKCPALEDLSIKGYIYGTDS------VTLNIPSLTLKRL------------- 217
            +  + L S C ALE+L +   ++   S      V+++IP  TLKRL             
Sbjct: 194 TSMLNKLLSGCHALEELVLANLMWADSSEDEACHVSVSIP--TLKRLNFCRSEDFYEGEF 251

Query: 218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDY 277
               +  EE+      +    PNL  L   D     Y      SL +A  +  +    D 
Sbjct: 252 HFYEDYDEENINEGVSLSFDNPNLVYLEYSDVIVDKYKQVSFDSLVEA--NLRLRKTPDQ 309

Query: 278 DSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA 337
           D  + V   V  +L  I N+K L LS  T+  L           P F  L  L ++    
Sbjct: 310 DETDKV--NVTKLLMGIHNVKILYLSDDTLEVLS----CCRERIPVFDNLLELTIKTTPY 363

Query: 338 CGWLSLAHIFSRMPKLESIVFE 359
            GW SL  +    P LE++VFE
Sbjct: 364 VGWKSLPPLLKSCPSLETLVFE 385

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:505006456	468	AT4G14096 "AT4G14096" [Arabido	0.925	0.717	0.328	6e-32
TAIR|locus:2081157	520	AT3G59200 "AT3G59200" [Arabido	0.936	0.653	0.310	2.4e-27
TAIR|locus:2162499	443	AT5G22670 "AT5G22670" [Arabido	0.922	0.756	0.296	1.7e-26
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.936	0.742	0.289	2.6e-25
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.909	0.734	0.281	6.7e-25
TAIR|locus:2082861	630	AT3G49150 "AT3G49150" [Arabido	0.925	0.533	0.313	9.7e-25
TAIR|locus:2026761	451	AT1G69630 [Arabidopsis thalian	0.925	0.745	0.284	1.5e-24
TAIR|locus:2081297	388	AT3G59190 "AT3G59190" [Arabido	0.933	0.873	0.293	3.3e-24
TAIR|locus:2162454	437	AT5G22700 "AT5G22700" [Arabido	0.906	0.752	0.281	4.6e-24
TAIR|locus:2075407	474	AT3G03030 "AT3G03030" [Arabido	0.947	0.725	0.279	1.2e-23

TAIR|locus:505006456 AT4G14096 "AT4G14096" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 117/356 (32%), Positives = 170/356 (47%)

Query:     9 DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLS 68
             D IS LP AI CHILSFLPTK A +T VLS  W+ ++  +PNL  D+ + L    N +  
Sbjct:     8 DIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYL----NPENE 63

Query:    69 TVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLND 127
             T  S+ F +FV RVL L  +  ++KFSL+    V+  R+  W++    R V ++++ +  
Sbjct:    64 TEVSSSFMDFVDRVLALQGNSPLHKFSLKIGDGVEPDRIIPWINNVLERGVSDLDLHVYM 123

Query:   128 DECIELPHCIYTCKTLEVLKLDMNXXXXXXXXXXXXSAKILHVILNTIDNNFSDW--LFS 185
             +     P  ++  KTL  LKL M               K L++     +        L S
Sbjct:   124 ETEFVFPSEMFLSKTLVRLKL-MLYPLLEFEDVYLPKLKTLYIDSCYFEKYGIGLTKLLS 182

Query:   186 KCPALEDLSIKGYIYGT-DSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQL 244
              CP LEDL +    + T D  ++++P  TLKRL    +  +E    K  V I  PNL  L
Sbjct:   183 GCPILEDLVLDDIPWCTWDFASVSVP--TLKRLTFSTQVRDE--FPK-SVSIDTPNLVYL 237

Query:   245 YIRDHGPGLYVVHELHSLTKAVVDYGI-ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLS 303
                D   G Y      SL +A +D  + +    Y   + V  A  D +  I N+K+L LS
Sbjct:   238 KFTDTVAGKYPKVNFDSLVEAHIDLRLLQGHQGYGENDMVGNAT-DFIMRICNVKTLYLS 296

Query:   304 SGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFE 359
             S T   L  L Y+ D + P F  L  L +E     GW SL  +    P LE+++F+
Sbjct:   297 SNT---LQVLTYSCD-AIPIFNNLTHLTIESNPEVGWQSLPGLLKNSPNLETLIFQ 348

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081157 AT3G59200 "AT3G59200" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 2.4e-27, P = 2.4e-27
 Identities = 117/377 (31%), Positives = 173/377 (45%)

Query:     7 TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLD 66
             + DRIS LPN ++ HILSFLPTK A +T VLS  W+ ++  + NL FDD    ++Q    
Sbjct:     5 SRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDS---DYQDGKP 61

Query:    67 LSTVASTR-FENFVHRVL-LSASGNINKFSLRCCGL-VDSSRLKLWVSFATMRNVREIEI 123
              S V  +R F  FV RVL L  +G++NKFSL C    VD +R+  W+     R V E+++
Sbjct:    62 KSDVELSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELDL 121

Query:   124 SLNDDECIELPHCIYTCKTLEVLKLD-MNXXXXXXXXXXXXSAKILHVILNTIDNNFSDW 182
             S+ +     LP  I+  KTL  LKL   N              K+  + ++ +D     +
Sbjct:   122 SILE---YPLPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLKTLYIDCVDVQERGF 178

Query:   183 ----LFSKCPALEDLSIKGYIYGTDSVTL-NIPSLTLKRLRLELEAPEEDYITKYKVIIR 237
                 L S CP LE+L +     G ++    ++   TLKRL    E   E Y     V   
Sbjct:   179 GFVKLLSGCPVLEELVLMNI--GWENWKFCSVSVKTLKRLTFFCE---ETYENPKSVSFD 233

Query:   238 APNLEQLYIRDHGPGLYVVHELHSLTKAVV------DYGIECIL---DYDSPEDVAQAVV 288
              PNL  L   D     Y     +SL +A +      D   +      DY S  D  + +V
Sbjct:   234 TPNLVYLEYSDAIASKYPKVNFNSLVEAHIGLRLTEDQSGDADFSEEDYFSEGDEKKQMV 293

Query:   289 ----DMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLA 344
                 D L+ I  ++ L LS+    A++ L +  +   P F  L +L +E      W SL 
Sbjct:   294 GNATDFLKGISTVQILYLSAQ---AIEVLTFCCE-PIPVFNNLIQLTIENNSEIRWDSLP 349

Query:   345 HIFSRMPKLESIVFEEV 361
              +    P LE++V + +
Sbjct:   350 GLLKNCPNLETLVLKRL 366

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162499 AT5G22670 "AT5G22670" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 109/368 (29%), Positives = 167/368 (45%)

Query:     4 GPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQR 63
             G +++D IS LP+ +LC ILS LPTK AV T VLS  WK    S+P L F+     EF  
Sbjct:     6 GVTSQDSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEFN---VSEFHG 62

Query:    64 NLDLSTVA----STRFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVR 119
               + + V      T  E  +H++ L+     +          D S L  W+  A  R V+
Sbjct:    63 YYEFARVVHGFLDTSRETCIHKLKLAFEKKQH----------DRSYLTQWIHNAVKRKVQ 112

Query:   120 EIEI---SLNDDECIELPHCIYTCKTLEVLKLDMNXXXXXXXXXXXXSAKILHVILNTID 176
              ++I   S    E I  PH +YTC+TL  L+L  N              K +H+I N   
Sbjct:   113 HLDIGRWSYLGQELI--PHSLYTCETLVSLRLH-NVSLPDFDHVSLPRLKTMHLIDNIYP 169

Query:   177 NN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYIT--KYK 233
             N+   + L S CP LEDL++   +     V L + SL+LK L L L+      I    ++
Sbjct:   170 NDALLENLISSCPVLEDLNVSRDVENIVKV-LRVRSLSLKSLILALDGDRYGDIEDDSWE 228

Query:   234 VIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVV-DMLR 292
             V+I AP L  L +RD     +V+  + S  K  +D   + +        + ++VV +   
Sbjct:   229 VVIDAPRLSYLSLRDDQSKSFVLSSVTSPAKVDIDVTFDVVRSVLKNFLLTRSVVRNFFT 288

Query:   293 DIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLS-LAHIFSRMP 351
              + +++ +++S  T+  L R  Y      P FP  N ++   V     L  L +     P
Sbjct:   289 RLSSVRDMTMSGTTLKVLSR--YMRHEPLPQFP--NMIQFYAVFCNSDLEKLPNFLESCP 344

Query:   352 KLESIVFE 359
              L+S+V E
Sbjct:   345 NLKSLVLE 352

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 2.6e-25, P = 2.6e-25
 Identities = 107/369 (28%), Positives = 172/369 (46%)

Query:     4 GPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLP--NLCFDD---RLC 58
             G    D IS LP  +LC +L +LPTK  V + VLSS W+ +W  +P  NL + D   R  
Sbjct:    13 GSREVDWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFNLSYCDFHVRNT 72

Query:    59 LEFQRNLDLSTVASTRFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNV 118
               +  N  L  V S  F  F  +  L  S  + ++     G    + ++ W++    R V
Sbjct:    73 FSYDHNTFLRFVDS--FMGFNSQSCLQ-SFRL-EYDSSGYGEPKLALIRRWINSVVSRKV 128

Query:   119 REIEISLNDDEC----IELPHCIYTCKTLEVLKLDMNXXXXXXXXXXXXSAKILHV-ILN 173
             + + +   DD C     E+P  +YTC+TL  L LD              S K LH+ I+ 
Sbjct:   129 KYLGVL--DDSCDNYEFEMPPTLYTCETLVYLTLD-GLSLASPKFVSLPSLKELHLSIVK 185

Query:   174 TIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYK 233
               D+   + L S+CP LE+L+I          T  + S +L  L     A  ++ + +  
Sbjct:   186 FADHMALETLISQCPVLENLNINRSFCDDFEFTC-VRSQSL--LSFTHVADTDEMLNEDL 242

Query:   234 VI-IRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVD--YGIECILDYDSPEDVAQA--VV 288
             V+ I AP L+ L + DH    +++++L SL +A +D  + + C   ++ P D+ +   + 
Sbjct:   243 VVAIDAPKLKYLRLSDHRIASFILNDLASLVEADIDTVFNLICKKMFN-PNDLNKRNMIR 301

Query:   289 DMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS 348
             D L  I +IK+L ++S T+  +   DY+     P F  L+ L V+  G   W  L     
Sbjct:   302 DFLVGISSIKTLIIASSTLEVI--YDYSRCEPLPLFRNLSSLRVDFYGY-KWEMLPIFLE 358

Query:   349 RMPKLESIV 357
               P L+S+V
Sbjct:   359 SCPNLKSLV 367

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 6.7e-25, P = 6.7e-25
 Identities = 102/362 (28%), Positives = 164/362 (45%)

Query:     9 DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLS 68
             DRIS LP+++LC ILS L TK +V T VLS  W+ +W  +P L  D         N    
Sbjct:    15 DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSN-------NFPDD 67

Query:    69 TVASTRFENFVHRVLLSASG-NINKFSLRC-CGLVDSSRLKLWVSFATMRNVREIEISL- 125
              V    F +FV+R L S +  ++ +F L       D+SR K W++    R V    +   
Sbjct:    68 DV----FVSFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVCHFNVHNE 123

Query:   126 --NDDECIELPHCIYTCKTLEVLKLDMNXXXXXXXXXXXXSAKILHVILNTIDNNFS-DW 182
               +DDE +++P  +Y+C+ L  L+L                 KI+H+ +   D + + + 
Sbjct:   124 VDDDDELVKMPLSLYSCERLVNLQL-YRVALDHPESVSLPCVKIMHLDMVKYDADSTLEI 182

Query:   183 LFSKCPALEDLSIKGYIYGTDSV-TLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNL 241
             L S CP LE+L+I       DS+  + + S +LK  +++ E  E      + V I AP L
Sbjct:   183 LISGCPVLEELTIVRD--PNDSLEVVCVRSQSLKSFKIDSERYESQ---NHVVTIDAPRL 237

Query:   242 EQLYIRDHGPGLYVVHELHSLTKAVVD--YGIECILDYDSPEDVAQAVV--DMLRDIKNI 297
             E + + DH    +++H +    K  +D  + +E   D   P+D ++  +    L  +  +
Sbjct:   238 EYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNVE-YNDPLEPDDSSKIAMLGKFLTGLSTV 296

Query:   298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIV 357
               + +SS T+  +   DY      P F  L+RL         W  L       P L S+V
Sbjct:   297 SEMVISSDTLQVIH--DYCKMEQLPQFSNLSRLHAYFEDTW-WEMLPTFLESFPNLHSLV 353

Query:   358 FE 359
              E
Sbjct:   354 ME 355

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082861 AT3G49150 "AT3G49150" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 115/367 (31%), Positives = 161/367 (43%)

Query:     6 STEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNL 65
             S +D IS LP A++CHILSFLP + +  T VLS  W+ ++   PNL FDD +      N 
Sbjct:    13 SKKDIISDLPEALICHILSFLPIEDSALTSVLSKKWQHLFAFRPNLEFDDAVVY---LNP 69

Query:    66 DLSTVASTRFENFVHRVLLSASGN--INKFSLRCCGLVDSSRLKLWVSFATMRNVREIEI 123
             D      T FENFV RVL S  G+  INKFSL C    D + +  W+S     NV E  +
Sbjct:    70 D-GERNETIFENFVDRVL-SLQGDYPINKFSLTCRDFTDPTCVSRWIS-----NVMERGV 122

Query:   124 SLNDDECI------ELPHCIYTCKTLEVLKLDM-NXXXXXXXXXXXXSAKILH---VILN 173
             S  D  CI       +P  I+  K L  L+++  N            + K L+   V+L 
Sbjct:   123 SDLDLRCIVYWDNGTMPPDIFVSKALVHLRIETGNGAFIDVEDVFLPNLKTLYLNKVLLR 182

Query:   174 TIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYK 233
               DN F   L + C  LEDL I    +    +  ++ S TLKRL    E  +   +    
Sbjct:   183 HSDNGFVK-LITSCHVLEDLFIMNICWD-GYLKRSLSSKTLKRLTFFCE--DVHAVNPES 238

Query:   234 VIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECIL-DYDSPEDVAQAVVDMLR 292
             V    PNL      D     Y      SL  A +   +      + S E +     D L 
Sbjct:   239 VSFDTPNLVYFVYHDCVADKYKNMNFDSLVYASICLQMTSHQRTHASYEHLVGNATDFLL 298

Query:   293 DIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPK 352
              I N++ L L + T   ++ L +  +   P F  L  L ++     GW SL  +    P 
Sbjct:   299 GISNVQILELFANT---IEVLTFCCEQ-IPVFKNLVCLIIKTDQKAGWESLPVLLKNCPD 354

Query:   353 LESIVFE 359
             LES++F+
Sbjct:   355 LESLIFD 361

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2026761 AT1G69630 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 104/366 (28%), Positives = 170/366 (46%)

Query:     4 GPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQR 63
             G    D IS LP+ +LC +L  LPTK  V T VLS  W+ +W  +P L  D+    EF  
Sbjct:    13 GSDEVDWISKLPDCLLCEVLLNLPTKDVVKTSVLSRRWRNLWKHVPGLDLDNTDFQEF-- 70

Query:    64 NLDLSTVASTRFENFVHRVLLSASGNINKFSLR--CCGLVDSSRLKL--WVSFATMRNVR 119
             N  LS V S  F +F      ++   + KF L+  C    D     +  W++    R V+
Sbjct:    71 NTFLSFVDS--FLDF------NSESFLQKFILKYDCDDEYDPDIFLIGRWINTIVTRKVQ 122

Query:   120 EIEISLNDDEC---IELPHCIYTCKTLEVLKLDMNXXXXXXXXXXXXSAKILHVILNTID 176
              I++ L+D      ++LP  IYTC++L  LKL               S K++ +I+    
Sbjct:   123 HIDV-LDDSYGSWEVQLPSSIYTCESLVSLKL-CGLTLASPEFVSLPSLKVMDLIITKFA 180

Query:   177 NNFS-DWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVI 235
             ++   + L +KCP LE L+I+        V L + S +L R     ++ +E  +    V 
Sbjct:   181 DDMGLETLITKCPVLESLTIERSFCDEIEV-LRVRSQSLLRFTHVADS-DEGVVEDLVVS 238

Query:   236 IRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVD--YGIECILDYDSPEDVAQAVV--DML 291
             I AP LE L + DH    +++++   L KA +D  + +  +  ++ P+D+ +  +  + L
Sbjct:   239 IDAPKLEYLRLSDHRVASFILNKPGKLVKADIDIVFNLSSVNKFN-PDDLPKRTMIRNFL 297

Query:   292 RDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMP 351
               I  IK + + S T+  +   D++     P F  L+ L VE  G   W  L       P
Sbjct:   298 LGISTIKDMIIFSSTLEVI--YDFSRCERLPLFRNLSVLCVEFYGYM-WEMLPIFLESCP 354

Query:   352 KLESIV 357
              L+++V
Sbjct:   355 NLKTLV 360

GO:0005634 "nucleus" evidence=ISM

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

TAIR|locus:2081297 AT3G59190 "AT3G59190" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 110/375 (29%), Positives = 173/375 (46%)

Query:     7 TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFD----DRLCLEFQ 62
             ++D IS LP+A+LCH+LSFLPT  A +T VL+  W+ +   +PNL  D    DR  +  +
Sbjct:    10 SKDIISNLPDALLCHVLSFLPTTEAASTSVLAKRWRFLLAFVPNLDLDNMIYDRPKMGRR 69

Query:    63 RNLDLSTVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREI 121
             + L+L       F+ FV RV+ L  +  + KFSLRC    D SR+  WV     R V E+
Sbjct:    70 KRLELRK----SFKLFVDRVMALQGNAPLKKFSLRCKIGSDPSRVNGWVLKVLDRGVEEL 125

Query:   122 EISLNDDECIELPHCIYTCKTLEVLKLD-MNXXXXXXXXXXXXSAKILHV-ILNTIDNNF 179
             ++ +  +    LP  +   KTL  LK+   +              K LH+  ++  D   
Sbjct:   126 DLYIASEYEYPLPPKVLMTKTLVSLKVSGTDEFTIDVGEFFLPKLKTLHLSAISFGDEGG 185

Query:   180 SDW--LFSKCPALEDLSIKGYIYGT-DSVTLNIPSLTLKRLRLELEAPEEDYITKYKVII 236
               +  L S C ALE+L +   ++   +  +++ PSL  KR+ ++ E  +E+      V  
Sbjct:   186 PPFAKLISACHALEELVMIKMMWDYWEFCSVSSPSL--KRVSIDCENIDEN---PKSVSF 240

Query:   237 RAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILD--YDSPEDVAQA-------- 286
               PNL  L   D     Y      SL +A +  G+    D  +D+ + V +         
Sbjct:   241 DTPNLVYLEFTDTVAVKYPKVNFDSLVEASI--GLRMTPDQVFDARDLVNRHHGYKRCKG 298

Query:   287 --VVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLA 344
                 D +  + N+K++ LSS    AL+ L +    + P F  L  L VE      W SL 
Sbjct:   299 ANAADFMMGVCNVKTMYLSSE---ALEVLTFCCKKAIPVFNNLIHLTVETDERVDWESLP 355

Query:   345 HIFSRMPKLESIVFE 359
              +    P LE+++FE
Sbjct:   356 ILLKNCPNLETLIFE 370

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2162454 AT5G22700 "AT5G22700" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 4.6e-24, P = 4.6e-24
 Identities = 102/362 (28%), Positives = 159/362 (43%)

Query:     9 DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLS 68
             DRIS LP+ +LC ILS LPTK AV T +LS+ W+ +W S P L  D          +D  
Sbjct:     6 DRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLSTPVLDID----------IDAF 55

Query:    69 TVASTRFENFVHRVL-LSASGNINKFSLRC-CGLVDSSRLKLWVSFATMRNVREIEISLN 126
               A+T F +F  R L  S    ++KF L      VD   +  W+  A  R ++ +E+   
Sbjct:    56 DDATT-FVSFASRFLEFSKDSCLHKFKLSVERDDVDMCTIMPWIQDAVNRRIQHLEVDCR 114

Query:   127 DDECIELPHC-IYTCKTLEVLKLDMNXXXXXXXXXXXXSAKILHV------ILNTIDNNF 179
                  E  +  +Y  +TL  L+L               + K++H+       L T++N  
Sbjct:   115 FSFHFEAVYLTLYLSETLVSLRLHF-VTLHRYEFVSLPNLKVMHLEENIYYCLETLEN-- 171

Query:   180 SDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEE---DYITKYKVII 236
                  S CP LEDL++   +       L + S +L  L+L L++      D I ++KVII
Sbjct:   172 ---FISSCPVLEDLTVVRIVDIITEKILRVRSRSLNSLKLVLDSSNGWFIDDIDEWKVII 228

Query:   237 RAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVD-MLRDIK 295
              AP L  L ++D     +V+  L S  KA +         +D P    ++ V  +L  + 
Sbjct:   229 DAPRLAYLSLKDDQSASFVISNLGSSAKADIKVSFNVNDIWDLPVTFERSNVGKLLTGLS 288

Query:   296 NIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLES 355
             +I+ L++S  T+  +    Y      P F  + RL       C    L  +    P L+S
Sbjct:   289 SIRDLTISGTTLMII--CHYLKHEPMPQFCNMVRLNARFYD-CDLEMLPCVLESCPNLKS 345

Query:   356 IV 357
             +V
Sbjct:   346 LV 347

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075407 AT3G03030 "AT3G03030" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 103/369 (27%), Positives = 166/369 (44%)

Query:     9 DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRLCLEFQRNLDLS 68
             D +S LP+ + CHILSFL TK +  T VLS  W+ ++T +PNL  DD   L  +      
Sbjct:     2 DLVSSLPDDVRCHILSFLTTKESALTSVLSKKWRNLFTLVPNLDLDDSEYLHPEETKWER 61

Query:    69 TVASTRFENFVHRVL-LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLND 127
                   F +FV RVL L  +G I +FSLRC   V  +RL  W+     R V ++E+ ++ 
Sbjct:    62 EEILDSFLDFVERVLSLQGNGPIRRFSLRCESGVPPARLNRWLCKVLQRGVADLELIIDF 121

Query:   128 DECIELPHCIYTCKTLEVLKL--DMNXXXXXXXXXXXXSAKILHVILNTIDNNFSDWLFS 185
             ++   LP  ++  +TL  L+L  +                ++  + +++    F D    
Sbjct:   122 EDGYLLPRELFVSETLVNLRLKSEFGCIHWWPGAEGTFLPRLQSLDISSA-MVFCDDKLQ 180

Query:   186 K---C-PALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNL 241
             K   C P +E+L + G  +    VT++  +LT  +L L           K  V    PNL
Sbjct:   181 KLLPCFPVIEELRLVGMEWIDSHVTVSCATLT-NQLLLSSTGSRTSKNPK-SVSFDTPNL 238

Query:   242 EQLYIRDHGPGLYVVHELHSLTKAVVDYGIE--------CILDYDSPEDVAQA---VVDM 290
               L   D     Y +  + SL KA +  G++           +Y S +DV +    VV +
Sbjct:   239 LSLAYSDLVAEDYPLVNMKSLFKARIILGVDDDQIARMRAPTNYLSEDDVVRRFGNVVKL 298

Query:   291 LRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRM 350
             ++ I+N++ L L S T+  L         S P F  +  L ++     GW ++  +    
Sbjct:   299 MKGIQNVQQLHLHSDTLEVLSMCC----ESMPVFNNVKTLGIKSDYDRGWQAVPALLRNC 354

Query:   351 PKLESIVFE 359
             P LE++ FE
Sbjct:   355 PHLETLTFE 363

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000983001 SubName- Full=Chromosome chr19 scaffold_111, whole genome shotgun sequence; (310 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
pfam00646	48	pfam00646, F-box, F-box domain	4e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 9  DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDR 56
            +  LP+ +L  ILS L  K  +   ++S  W+ +  SL        
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.85
KOG4341	483	consensus F-box protein containing LRR [General fu	99.64
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.16
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.05
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.01
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.8
KOG4341	483	consensus F-box protein containing LRR [General fu	98.73
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.6
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.59
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.58
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.53
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.45
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.45
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.26
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.2
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.15
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.13
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.1
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.08
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.02
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.99
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.92
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.88
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.84
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.81
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.76
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.6
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.34
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.25
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.09
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.98
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.97
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.5
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.44
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.25
PLN03150	623	hypothetical protein; Provisional	96.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.14
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.07
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.86
PRK15386	426	type III secretion protein GogB; Provisional	95.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.4
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.39
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.18
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.12
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	95.03
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.02
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.92
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.18
PLN03150	623	hypothetical protein; Provisional	93.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.95
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	92.57
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	91.83
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	91.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.35
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	88.85
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.43
PRK15386	426	type III secretion protein GogB; Provisional	88.35
PF13013	109	F-box-like_2: F-box-like domain	86.68
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	86.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	84.76
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	81.75
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	80.75

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=6e-23  Score=171.48  Aligned_cols=285  Identities=20%  Similarity=0.182  Sum_probs=192.1

Q ss_pred             ccCCCChHHHHHHhcCCChhHhhhhhhhccchhhh------hccCcceEEecCcchhhhcccccchhhhhHHHHHHHHHH
Q 017981           10 RISCLPNAILCHILSFLPTKYAVATCVLSSTWKLV------WTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVL   83 (363)
Q Consensus        10 ~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l   83 (363)
                      .+..|||||+..||+.|+.+|+++++.|||||+++      |..   +++......+.            .    ..+ +
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p~------------~----l~~-l  156 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHPD------------V----LGR-L  156 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccChh------------H----HHH-H
Confidence            37899999999999999999999999999999864      443   33333222211            1    222 2


Q ss_pred             hcCCCCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCccc
Q 017981           84 LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIF  161 (363)
Q Consensus        84 ~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~  161 (363)
                      .+++  |..+++-......+..++-.  ..++.+++.++++........+--.+..|++|+.|+|.+..+.++  ...+.
T Consensus       157 ~~rg--V~v~Rlar~~~~~prlae~~--~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk  232 (419)
T KOG2120|consen  157 LSRG--VIVFRLARSFMDQPRLAEHF--SPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK  232 (419)
T ss_pred             HhCC--eEEEEcchhhhcCchhhhhh--hhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc
Confidence            2222  33343332221111111111  123347999999887766667777778899999999999999865  34457


Q ss_pred             CcccceeeeeeEE-EccchHHHHhccCCccceEEEeeeEeCCCceeEEE--ecCCcceEEEEecCCccccCCceEEEEec
Q 017981          162 FPSAKILHVILNT-IDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI--PSLTLKRLRLELEAPEEDYITKYKVIIRA  238 (363)
Q Consensus       162 ~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  238 (363)
                      ..+|+.|+|+.+. ++.-+++-++++|..|.+|.|.+|..........+  .+++|+.|++++|...-.......++..+
T Consensus       233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc  312 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC  312 (419)
T ss_pred             cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence            8899999999996 65558899999999999999999974332111112  35899999999985432222334455677


Q ss_pred             cCcceEEEeecCCCceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccC
Q 017981          239 PNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYAND  318 (363)
Q Consensus       239 p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~  318 (363)
                      |+|..|+++++..          |+                     +.+...+-+++-|++|+++.+....-+.+   . 
T Consensus       313 p~l~~LDLSD~v~----------l~---------------------~~~~~~~~kf~~L~~lSlsRCY~i~p~~~---~-  357 (419)
T KOG2120|consen  313 PNLVHLDLSDSVM----------LK---------------------NDCFQEFFKFNYLQHLSLSRCYDIIPETL---L-  357 (419)
T ss_pred             Cceeeeccccccc----------cC---------------------chHHHHHHhcchheeeehhhhcCCChHHe---e-
Confidence            8888887777643          11                     11677777888899999988754111111   1 


Q ss_pred             CCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcce
Q 017981          319 HSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESI  356 (363)
Q Consensus       319 ~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L  356 (363)
                       .+...+.|..|++.++.  .+..+.-+.+.||+|+--
T Consensus       358 -~l~s~psl~yLdv~g~v--sdt~mel~~e~~~~lkin  392 (419)
T KOG2120|consen  358 -ELNSKPSLVYLDVFGCV--SDTTMELLKEMLSHLKIN  392 (419)
T ss_pred             -eeccCcceEEEEecccc--CchHHHHHHHhCcccccc
Confidence             23456779999998874  555788888999998754

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.64  E-value=1.2e-18  Score=152.07  Aligned_cols=221  Identities=21%  Similarity=0.269  Sum_probs=128.0

Q ss_pred             CcccC-CCChHHHHHHhcCCChhHhhhhhhhccchhhh------hccCcceEEecCcchhhhcccccchhhhhHHHHHHH
Q 017981            8 EDRIS-CLPNAILCHILSFLPTKYAVATCVLSSTWKLV------WTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVH   80 (363)
Q Consensus         8 ~d~i~-~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (363)
                      ++.++ .||+|++.+|||+|+++.+++++++|+-|..+      |..+.-..|....        +         ..+|.
T Consensus        68 ~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv--------~---------g~VV~  130 (483)
T KOG4341|consen   68 NNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV--------D---------GGVVE  130 (483)
T ss_pred             cccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC--------C---------Cccee
Confidence            34454 59999999999999999999999999999864      4433221221110        0         11233


Q ss_pred             HHHhcCCCCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCc-cccCCcccccCCcccEEEecccccccCC--
Q 017981           81 RVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDE-CIELPHCIYTCKTLEVLKLDMNFFIKTP--  157 (363)
Q Consensus        81 ~~l~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~~--  157 (363)
                      ....+.++.++.++++.+.....+.+....  ...+++++|.+..+..- ...+-.....|++|++|.|..|...+..  
T Consensus       131 ~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~--~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L  208 (483)
T KOG4341|consen  131 NMISRCGGFLKELSLRGCRAVGDSSLRTFA--SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL  208 (483)
T ss_pred             hHhhhhccccccccccccccCCcchhhHHh--hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence            334444466777777766644444433322  22457777766555421 1112222234777777777776544331  


Q ss_pred             --CcccCcccceeeeeeEE-EccchHHHHhccCCccceEEEeeeEeCCCcee---EEEecCCcceEEEEecCCccccCCc
Q 017981          158 --PTIFFPSAKILHVILNT-IDNNFSDWLFSKCPALEDLSIKGYIYGTDSVT---LNIPSLTLKRLRLELEAPEEDYITK  231 (363)
Q Consensus       158 --~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~---l~i~~~~L~~L~l~~~~~~~~~~~~  231 (363)
                        -..+||+|+.|++++|. +.+.+++.+..+|..|+.+.+++|.-.+. +.   ....++-+.++++..|...++ ...
T Consensus       209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l-e~l~~~~~~~~~i~~lnl~~c~~lTD-~~~  286 (483)
T KOG4341|consen  209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL-EALLKAAAYCLEILKLNLQHCNQLTD-EDL  286 (483)
T ss_pred             HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH-HHHHHHhccChHhhccchhhhccccc-hHH
Confidence              23367777777777775 44447777777777777777777652222 11   122235566666666654433 122


Q ss_pred             eEEEEeccCcceEEEeec
Q 017981          232 YKVIIRAPNLEQLYIRDH  249 (363)
Q Consensus       232 ~~~~~~~p~L~~L~l~~~  249 (363)
                      ..+.-.+..|+.|.++++
T Consensus       287 ~~i~~~c~~lq~l~~s~~  304 (483)
T KOG4341|consen  287 WLIACGCHALQVLCYSSC  304 (483)
T ss_pred             HHHhhhhhHhhhhcccCC
Confidence            233344566677777665

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.16  E-value=2.5e-11  Score=125.54  Aligned_cols=233  Identities=16%  Similarity=0.177  Sum_probs=120.0

Q ss_pred             CCceEEEEEcCCCccccCCcccc-cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          116 RNVREIEISLNDDECIELPHCIY-TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      +.++.|++..+.. ...+|..++ .+++|++|+|++|.+.+..+...+++|++|+|.++.+.+. +...+..+++|++|+
T Consensus        93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~  170 (968)
T PLN00113         93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence            4777777765443 235666555 6778888888777766443445677777777777766543 223355677777777


Q ss_pred             EeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc---eeeecCCCceEEEEeee
Q 017981          195 IKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL---YVVHELHSLTKAVVDYG  270 (363)
Q Consensus       195 L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~~~l~~~  270 (363)
                      |.+|...+. ..-.+ ..++|+.|++.+|.....   .......+++|++|.++++....   ..++++++|+.+++..+
T Consensus       171 L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  246 (968)
T PLN00113        171 LGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQ---IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN  246 (968)
T ss_pred             CccCccccc-CChhhhhCcCCCeeeccCCCCcCc---CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence            777654322 11111 236677777766654321   11111334556666665544321   12344555555555433


Q ss_pred             eceecc-------------CCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981          271 IECILD-------------YDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA  337 (363)
Q Consensus       271 ~~~~~~-------------~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  337 (363)
                      ......             ....+.........+..+++|+.|+++.+.+   ...  ... .+..+++|+.|++.++..
T Consensus       247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l---~~~--~p~-~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL---SGE--IPE-LVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee---ccC--CCh-hHcCCCCCcEEECCCCcc
Confidence            210000             0000011111223344555666666655433   110  001 233556777777776543


Q ss_pred             CChHHHHHHHHhCCCCcceEEeeec
Q 017981          338 CGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       338 ~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      ..  .++..+..+|+|+.|++..++
T Consensus       321 ~~--~~~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        321 TG--KIPVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             CC--cCChhHhcCCCCCEEECcCCC
Confidence            21  234456778888888887665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.05  E-value=2.8e-11  Score=110.79  Aligned_cols=210  Identities=18%  Similarity=0.130  Sum_probs=98.6

Q ss_pred             CcccEEEecccccccCC--CcccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceE
Q 017981          141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRL  217 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L  217 (363)
                      .+|..|+|+.|++...|  .+..+|.|+.|+|..+++.-- ++.  +.+.|+|+.|.|.+|............+.+++.|
T Consensus       197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l  274 (873)
T KOG4194|consen  197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL  274 (873)
T ss_pred             chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence            34444555544444332  222355555555555544322 222  4455555555555554322212234445566666


Q ss_pred             EEEecCCccccCCceEEEEeccCcceEEEeecCCCceee---ecCCCceEEEEeeeeceec--cCC-----------Cch
Q 017981          218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVV---HELHSLTKAVVDYGIECIL--DYD-----------SPE  281 (363)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~---~~~~~L~~~~l~~~~~~~~--~~~-----------~~~  281 (363)
                      ++..|.....   ..........|+.|+++.+....+.+   +-+++|++++++.+.-...  +.|           ..+
T Consensus       275 ~L~~N~l~~v---n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  275 NLETNRLQAV---NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             ecccchhhhh---hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence            6666644321   11223445566666666554443333   2356677776665542110  000           011


Q ss_pred             hhHHHHHHHhhccCcceEEEEeCCcccccccccc-ccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEee
Q 017981          282 DVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDY-ANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEE  360 (363)
Q Consensus       282 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~  360 (363)
                      .+..-....+.++++|++|++..+.+   .+..+ ... .+..++.|++|.+.++.--.  .-..-+...++||.|++..
T Consensus       352 si~~l~e~af~~lssL~~LdLr~N~l---s~~IEDaa~-~f~gl~~LrkL~l~gNqlk~--I~krAfsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  352 SIDHLAEGAFVGLSSLHKLDLRSNEL---SWCIEDAAV-AFNGLPSLRKLRLTGNQLKS--IPKRAFSGLEALEHLDLGD  425 (873)
T ss_pred             chHHHHhhHHHHhhhhhhhcCcCCeE---EEEEecchh-hhccchhhhheeecCceeee--cchhhhccCcccceecCCC
Confidence            12222444566666777777766655   43333 111 23345566666666653211  1122344566777776655


Q ss_pred             e
Q 017981          361 V  361 (363)
Q Consensus       361 ~  361 (363)
                      |
T Consensus       426 N  426 (873)
T KOG4194|consen  426 N  426 (873)
T ss_pred             C
Confidence            4

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.01  E-value=3e-10  Score=117.58  Aligned_cols=83  Identities=14%  Similarity=0.145  Sum_probs=46.6

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      .+++.|++..+.. ...+|..+.++++|++|+|++|.+...  .....+++|++|+|.++.+.+. +..-+..+++|++|
T Consensus       164 ~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L  241 (968)
T PLN00113        164 SSLKVLDLGGNVL-VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSLNHL  241 (968)
T ss_pred             CCCCEEECccCcc-cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc-CChhHhcCCCCCEE
Confidence            4777777765542 224555566677777777776665432  2234566666666666655433 12224455666666


Q ss_pred             EEeeeEe
Q 017981          194 SIKGYIY  200 (363)
Q Consensus       194 ~L~~c~~  200 (363)
                      .+.+|..
T Consensus       242 ~L~~n~l  248 (968)
T PLN00113        242 DLVYNNL  248 (968)
T ss_pred             ECcCcee
Confidence            6665543

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.97  E-value=4.3e-10  Score=70.10  Aligned_cols=36  Identities=28%  Similarity=0.560  Sum_probs=31.3

Q ss_pred             cCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhc
Q 017981           11 ISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWT   46 (363)
Q Consensus        11 i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~   46 (363)
                      |..||+|++.+||++|+.+|+++++.|||+|+++..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            578999999999999999999999999999997643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.82  E-value=8e-10  Score=99.57  Aligned_cols=260  Identities=17%  Similarity=0.073  Sum_probs=148.8

Q ss_pred             cceEEEEecCCCChhhHHHHHHHH-HhCCceEEEEEcCCCc--c---ccCCcccccCCcccEEEecccccccC--CCccc
Q 017981           90 INKFSLRCCGLVDSSRLKLWVSFA-TMRNVREIEISLNDDE--C---IELPHCIYTCKTLEVLKLDMNFFIKT--PPTIF  161 (363)
Q Consensus        90 l~~l~l~~~~~~~~~~~~~wi~~~-~~~~l~~L~l~~~~~~--~---~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~  161 (363)
                      ++.+.+.... .....+....... ..++++++.+......  .   ..++..+..+++|++|++++|.+...  .....
T Consensus        25 L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          25 LQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             ccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            6777776553 2222222222221 1235888888654332  1   12233445688999999999887632  11122


Q ss_pred             C---cccceeeeeeEEEccchHHH---HhccC-CccceEEEeeeEeCCCceeE-----EEecCCcceEEEEecCCccccC
Q 017981          162 F---PSAKILHVILNTIDNNFSDW---LFSKC-PALEDLSIKGYIYGTDSVTL-----NIPSLTLKRLRLELEAPEEDYI  229 (363)
Q Consensus       162 ~---~~L~~L~L~~~~~~~~~l~~---ll~~c-p~Le~L~L~~c~~~~~~~~l-----~i~~~~L~~L~l~~~~~~~~~~  229 (363)
                      +   ++|++|++.++.+.+.++..   .+..+ ++|++|.+.+|.+.+. ...     -..+++|++|++.+|.......
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA-SCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch-HHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            2   55999999999887654333   34556 8999999999875421 111     1123689999999886542100


Q ss_pred             C-ceEEEEeccCcceEEEeecCCCce-------eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhh----ccCcc
Q 017981          230 T-KYKVIIRAPNLEQLYIRDHGPGLY-------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLR----DIKNI  297 (363)
Q Consensus       230 ~-~~~~~~~~p~L~~L~l~~~~~~~~-------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~----~l~~l  297 (363)
                      . ........++|++|+++++.....       .+..+++|+.+.+..+..       .+   ..+..+..    ..+.+
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l-------~~---~~~~~l~~~~~~~~~~L  252 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL-------TD---AGAAALASALLSPNISL  252 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC-------ch---HHHHHHHHHHhccCCCc
Confidence            0 001112346899999998765321       245667888888765432       11   11222222    34788


Q ss_pred             eEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCCh--HHHHHHHHhC-CCCcceEEeeecC
Q 017981          298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGW--LSLAHIFSRM-PKLESIVFEEVRM  363 (363)
Q Consensus       298 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~ll~~~-p~L~~L~l~~~~~  363 (363)
                      +.|.++++.+.+. ......+ .++.+++|+.++++++.-...  ..+...++.- +.|++|.+..+.+
T Consensus       253 ~~L~l~~n~i~~~-~~~~l~~-~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         253 LTLSLSCNDITDD-GAKDLAE-VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             eEEEccCCCCCcH-HHHHHHH-HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            9999988765210 1111112 345567888888888765222  3344444544 7888888876653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.81  E-value=6.9e-10  Score=100.01  Aligned_cols=238  Identities=15%  Similarity=0.109  Sum_probs=152.7

Q ss_pred             CCceEEEEEcCCCc---cccCCcccccCCcccEEEeccccccc--C------CCcccCcccceeeeeeEEEccc---hHH
Q 017981          116 RNVREIEISLNDDE---CIELPHCIYTCKTLEVLKLDMNFFIK--T------PPTIFFPSAKILHVILNTIDNN---FSD  181 (363)
Q Consensus       116 ~~l~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~--~------~~~~~~~~L~~L~L~~~~~~~~---~l~  181 (363)
                      .+++++.+..+...   ...++..+...++|++|.++++.+..  .      .....+++|+.|+|.++.+.+.   .+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            46999999877642   22455556678889999999887652  1      1223577999999999988643   444


Q ss_pred             HHhccCCccceEEEeeeEeCCCc-ee----EEEecCCcceEEEEecCCccccC-CceEEEEeccCcceEEEeecCCCce-
Q 017981          182 WLFSKCPALEDLSIKGYIYGTDS-VT----LNIPSLTLKRLRLELEAPEEDYI-TKYKVIIRAPNLEQLYIRDHGPGLY-  254 (363)
Q Consensus       182 ~ll~~cp~Le~L~L~~c~~~~~~-~~----l~i~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~p~L~~L~l~~~~~~~~-  254 (363)
                      .+... ++|++|.+.+|.+.+.. ..    +....++|++|.+.+|....... ........+++|++|+++++..... 
T Consensus       103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            55555 77999999998754210 01    11112789999999997652100 0111223457899999999866521 


Q ss_pred             ------eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCC-CCCCc
Q 017981          255 ------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFP-TFPFL  327 (363)
Q Consensus       255 ------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~-~~~~L  327 (363)
                            .+...+.|+.+.+..+.-       .......+...+..+++|+.|+++++.... ..+....+ .++ ...+|
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i-------~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~-~~~~~~~~L  252 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGL-------TDEGASALAETLASLKSLEVLNLGDNNLTD-AGAAALAS-ALLSPNISL  252 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCcc-------ChHHHHHHHHHhcccCCCCEEecCCCcCch-HHHHHHHH-HHhccCCCc
Confidence                  123456899988875542       111223367778889999999999986621 11111111 111 24679


Q ss_pred             ceEEEEeccCC--ChHHHHHHHHhCCCCcceEEeeecC
Q 017981          328 NRLEVEGVGAC--GWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       328 ~~L~l~~~~~~--~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      ++|++.+|.-.  ....+...+..+++|+.++++.+++
T Consensus       253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            99999998642  2234555666778899999988764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.80  E-value=5.6e-10  Score=102.49  Aligned_cols=189  Identities=16%  Similarity=0.132  Sum_probs=111.2

Q ss_pred             ccCCccccc-CCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE
Q 017981          131 IELPHCIYT-CKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL  207 (363)
Q Consensus       131 ~~l~~~~~~-~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l  207 (363)
                      ..+|...|+ .++|+.|+|..|.+...  ..+.++++|+.|.|..+.+..-+ +.++-+|.++|+|.|..|.....++.-
T Consensus       210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~  288 (873)
T KOG4194|consen  210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGW  288 (873)
T ss_pred             cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccchhhhhhccc
Confidence            367776666 99999999999877644  34568888888888888654321 233567788888888877633221111


Q ss_pred             EEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---------------------------eeecCC
Q 017981          208 NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---------------------------VVHELH  260 (363)
Q Consensus       208 ~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---------------------------~~~~~~  260 (363)
                      -..-.+|+.|++++|.+....   ..-...+++|+.|+++.+....+                           .+..+.
T Consensus       289 lfgLt~L~~L~lS~NaI~rih---~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls  365 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIH---IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS  365 (873)
T ss_pred             ccccchhhhhccchhhhheee---cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence            122345555666555433210   01113345555555555433221                           222334


Q ss_pred             CceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981          261 SLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA  337 (363)
Q Consensus       261 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  337 (363)
                      +|.+++++-+.-.+       .+.+ ....+.++++|++|.+.++.+   +.+.+  + .+..+++|++|++..+..
T Consensus       366 sL~~LdLr~N~ls~-------~IED-aa~~f~gl~~LrkL~l~gNql---k~I~k--r-Afsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  366 SLHKLDLRSNELSW-------CIED-AAVAFNGLPSLRKLRLTGNQL---KSIPK--R-AFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             hhhhhcCcCCeEEE-------EEec-chhhhccchhhhheeecCcee---eecch--h-hhccCcccceecCCCCcc
Confidence            44444433221100       0011 455677899999999999988   77665  1 344788999999988753

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.73  E-value=1.8e-09  Score=95.43  Aligned_cols=165  Identities=15%  Similarity=0.116  Sum_probs=87.3

Q ss_pred             cCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeE-eCCC-ceeEEEecCCcceEEEEecCCccccCCceEEEEe
Q 017981          161 FFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYI-YGTD-SVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIR  237 (363)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~-~~~~-~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~  237 (363)
                      ++..|+.|+.+++...++ .+.++..+|++|+.|.+..|. +.+. ...+.-.++.|+.|.+.+|....+ .........
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d-~tL~sls~~  370 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD-GTLASLSRN  370 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh-hhHhhhccC
Confidence            455555555555543333 555555555666666555555 1111 022233345555555555544333 223344455


Q ss_pred             ccCcceEEEeecCCCceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccccc
Q 017981          238 APNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYAN  317 (363)
Q Consensus       238 ~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~  317 (363)
                      +|.|+.+.++.+...          ++-.                 -.++...-.++..++.|.+++++..+++.    .
T Consensus       371 C~~lr~lslshce~i----------tD~g-----------------i~~l~~~~c~~~~l~~lEL~n~p~i~d~~----L  419 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELI----------TDEG-----------------IRHLSSSSCSLEGLEVLELDNCPLITDAT----L  419 (483)
T ss_pred             CchhccCChhhhhhh----------hhhh-----------------hhhhhhccccccccceeeecCCCCchHHH----H
Confidence            555555555533210          0000                 00011222234456777777776533222    2


Q ss_pred             CCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEE
Q 017981          318 DHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVF  358 (363)
Q Consensus       318 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l  358 (363)
                      + ....+++|+.+++..|..++-+++..+..++|+++..-+
T Consensus       420 e-~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  420 E-HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             H-HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            2 344566888888888888888899999999999887644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.1e-09  Score=97.10  Aligned_cols=205  Identities=19%  Similarity=0.161  Sum_probs=119.1

Q ss_pred             CCcccEEEecccccccCC---CcccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCC-ceeEEEecCCc
Q 017981          140 CKTLEVLKLDMNFFIKTP---PTIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTD-SVTLNIPSLTL  214 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~-~~~l~i~~~~L  214 (363)
                      ..+|+...|.++......   ....||+++.|+|+.+=+... .+.++....|+||.|.|+.|.+... +.......++|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            456666666666555322   233677777777777766555 6667777788888888887763221 02233345778


Q ss_pred             ceEEEEecCCccccCCceEEEEeccCcceEEEeecCCC---ceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHh
Q 017981          215 KRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG---LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDML  291 (363)
Q Consensus       215 ~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  291 (363)
                      |.|.++.|....  .....+....|+|+.|.+.++...   ......+..|+++++.......   |+       ..-..
T Consensus       200 K~L~l~~CGls~--k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~---~~-------~~~~~  267 (505)
T KOG3207|consen  200 KQLVLNSCGLSW--KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID---FD-------QGYKV  267 (505)
T ss_pred             heEEeccCCCCH--HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc---cc-------ccccc
Confidence            888888876542  123345566788888877776321   1112334556666665444321   11       23345


Q ss_pred             hccCcceEEEEeCCcccccccccc----ccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeee
Q 017981          292 RDIKNIKSLSLSSGTMFALDRLDY----ANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEV  361 (363)
Q Consensus       292 ~~l~~l~~L~l~~~~~~~~~~l~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  361 (363)
                      ..++.|+.|.++.+++   ..+..    ..+ ....|+.|+.|++..+.-.+|..+..+ +..++|+.|.+..+
T Consensus       268 ~~l~~L~~Lnls~tgi---~si~~~d~~s~~-kt~~f~kL~~L~i~~N~I~~w~sl~~l-~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  268 GTLPGLNQLNLSSTGI---ASIAEPDVESLD-KTHTFPKLEYLNISENNIRDWRSLNHL-RTLENLKHLRITLN  336 (505)
T ss_pred             ccccchhhhhccccCc---chhcCCCccchh-hhcccccceeeecccCccccccccchh-hccchhhhhhcccc
Confidence            5677777777777666   33322    111 234677788888877766566655544 44566666665443

>PLN03210 Resistant to P

Probab=98.60  E-value=5.5e-08  Score=101.76  Aligned_cols=77  Identities=12%  Similarity=0.008  Sum_probs=35.1

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .++.|.+....  ...+|..+ ...+|+.|+|.++.+...+ +...+++|+.|+|.++..... +.. ++.+++|++|.|
T Consensus       590 ~Lr~L~~~~~~--l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYP--LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCC--CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEe
Confidence            45555554433  22344332 3456666666655544322 233455555555554432111 001 334455555555


Q ss_pred             eee
Q 017981          196 KGY  198 (363)
Q Consensus       196 ~~c  198 (363)
                      .+|
T Consensus       665 ~~c  667 (1153)
T PLN03210        665 SDC  667 (1153)
T ss_pred             cCC
Confidence            554

syringae 6; Provisional

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.59  E-value=6.9e-09  Score=89.76  Aligned_cols=194  Identities=18%  Similarity=0.163  Sum_probs=105.3

Q ss_pred             ccCcccceeeeeeEEEccc---hHHHHhccCCccceEEEeeeEeCCCc-ee-----------EEEe-cCCcceEEEEecC
Q 017981          160 IFFPSAKILHVILNTIDNN---FSDWLFSKCPALEDLSIKGYIYGTDS-VT-----------LNIP-SLTLKRLRLELEA  223 (363)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~c~~~~~~-~~-----------l~i~-~~~L~~L~l~~~~  223 (363)
                      ..+|.|+.|+|+++.+...   .+..++++|..|++|+|.+|..+... ..           -.++ .+.|+.+....|.
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            3566677777777766544   67788888999999999998632210 11           1122 2667777777765


Q ss_pred             CccccCC-ceEEEEeccCcceEEEeecCCCc--e-----eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccC
Q 017981          224 PEEDYIT-KYKVIIRAPNLEQLYIRDHGPGL--Y-----VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK  295 (363)
Q Consensus       224 ~~~~~~~-~~~~~~~~p~L~~L~l~~~~~~~--~-----~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  295 (363)
                      ..+.... ........|.|+.+.+..+....  .     .+..+|.|+.+++..+..       ...-+..+...+...+
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf-------t~egs~~LakaL~s~~  241 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF-------TLEGSVALAKALSSWP  241 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh-------hhHHHHHHHHHhcccc
Confidence            4432111 11122344777777777554331  1     245667777776654442       2222334666666667


Q ss_pred             cceEEEEeCCccccc--cccccccCCCCCCCCCcceEEEEeccCCCh--HHHHHHHHhCCCCcceEEeeecC
Q 017981          296 NIKSLSLSSGTMFAL--DRLDYANDHSFPTFPFLNRLEVEGVGACGW--LSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       296 ~l~~L~l~~~~~~~~--~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      +|+.|.++.+.+.+-  ..+.+.+.   -.+++|+.|++.++.....  ..+..-...-|.|+.|.|++||+
T Consensus       242 ~L~El~l~dcll~~~Ga~a~~~al~---~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  242 HLRELNLGDCLLENEGAIAFVDALK---ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hheeecccccccccccHHHHHHHHh---ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            777777776654110  11111111   1355677777777654111  12333344467777777777764

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.58  E-value=1.6e-08  Score=63.38  Aligned_cols=39  Identities=33%  Similarity=0.498  Sum_probs=32.3

Q ss_pred             ccCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhccC
Q 017981           10 RISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSL   48 (363)
Q Consensus        10 ~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~~~   48 (363)
                      .|.+||+|++.+||++|+.+|+++++.|||+|++++...
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence            367899999999999999999999999999999876653

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN03210 Resistant to P

Probab=98.53  E-value=1e-07  Score=99.73  Aligned_cols=80  Identities=18%  Similarity=0.137  Sum_probs=40.9

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEeccccccc-CC-CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK-TP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      .+++.++++.+.. -..+| .+..+++|++|+|.+|.... .| ....+++|+.|++.+|..... +.. ..++++|+.|
T Consensus       634 ~~Lk~L~Ls~~~~-l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~-Lp~-~i~l~sL~~L  709 (1153)
T PLN03210        634 TGLRNIDLRGSKN-LKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI-LPT-GINLKSLYRL  709 (1153)
T ss_pred             CCCCEEECCCCCC-cCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc-cCC-cCCCCCCCEE
Confidence            4677777755432 12334 24556777777777664321 22 234566677777766532211 000 0145566666


Q ss_pred             EEeeeE
Q 017981          194 SIKGYI  199 (363)
Q Consensus       194 ~L~~c~  199 (363)
                      .+.+|.
T Consensus       710 ~Lsgc~  715 (1153)
T PLN03210        710 NLSGCS  715 (1153)
T ss_pred             eCCCCC
Confidence            666553

syringae 6; Provisional

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.45  E-value=1.2e-07  Score=57.05  Aligned_cols=34  Identities=38%  Similarity=0.526  Sum_probs=31.6

Q ss_pred             CChHHHHHHhcCCChhHhhhhhhhccchhhhhcc
Q 017981           14 LPNAILCHILSFLPTKYAVATCVLSSTWKLVWTS   47 (363)
Q Consensus        14 LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~~   47 (363)
                      ||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.6e-08  Score=89.99  Aligned_cols=157  Identities=18%  Similarity=0.132  Sum_probs=103.8

Q ss_pred             ccCCcccEEEecccccccCCC---cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEE-ecCC
Q 017981          138 YTCKTLEVLKLDMNFFIKTPP---TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLT  213 (363)
Q Consensus       138 ~~~~~L~~L~L~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i-~~~~  213 (363)
                      ..+++|+.|+|+.|.+..+.+   ...++.|++|.|..|-++..++.+++..||+|+.|+|..|..... ....- ..++
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~  247 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-KATSTKILQT  247 (505)
T ss_pred             HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-ecchhhhhhH
Confidence            346778888888777764422   237889999999999988669999999999999999999852222 11111 1378


Q ss_pred             cceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceee---------ecCCCceEEEEeeeeceeccCCCchhhH
Q 017981          214 LKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVV---------HELHSLTKAVVDYGIECILDYDSPEDVA  284 (363)
Q Consensus       214 L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~---------~~~~~L~~~~l~~~~~~~~~~~~~~~~~  284 (363)
                      |++|+|.++...+.+  .....-..|+|+.|.++.+...++.+         ..+|+|+.+.+.-+.-.+          
T Consensus       248 L~~LdLs~N~li~~~--~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~----------  315 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFD--QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD----------  315 (505)
T ss_pred             HhhccccCCcccccc--cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc----------
Confidence            999999999776541  11234678999999999876654432         345677777665443210          


Q ss_pred             HHHHHHhhccCcceEEEEeCCcc
Q 017981          285 QAVVDMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       285 ~~~~~~l~~l~~l~~L~l~~~~~  307 (363)
                      -....-+..++++++|.+..+.+
T Consensus       316 w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  316 WRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             ccccchhhccchhhhhhcccccc
Confidence            01334455566677776655433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.45  E-value=3.4e-08  Score=85.52  Aligned_cols=216  Identities=15%  Similarity=0.121  Sum_probs=140.4

Q ss_pred             ccCCcccEEEecccccccC------CCcccCcccceeeeeeEEEc---cc------hHHHHhccCCccceEEEeeeEeCC
Q 017981          138 YTCKTLEVLKLDMNFFIKT------PPTIFFPSAKILHVILNTID---NN------FSDWLFSKCPALEDLSIKGYIYGT  202 (363)
Q Consensus       138 ~~~~~L~~L~L~~~~~~~~------~~~~~~~~L~~L~L~~~~~~---~~------~l~~ll~~cp~Le~L~L~~c~~~~  202 (363)
                      -...++++++|+++.+...      ....+-++|+.-++++.-..   ++      .+...+.+||.|++|+|++|.++.
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            3456778888888776632      22334556676666665211   11      344556799999999999997532


Q ss_pred             Cc-e---eEEEecCCcceEEEEecCCccccCC----------ceEEEEeccCcceEEEeecCCCce-------eeecCCC
Q 017981          203 DS-V---TLNIPSLTLKRLRLELEAPEEDYIT----------KYKVIIRAPNLEQLYIRDHGPGLY-------VVHELHS  261 (363)
Q Consensus       203 ~~-~---~l~i~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~~p~L~~L~l~~~~~~~~-------~~~~~~~  261 (363)
                      -- +   .+--++.+|+.|.+.+|..+-....          ..+..-+.|.|+.+....+.....       .++..|.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            10 1   1112368999999999976432000          223446779999999998765422       3567789


Q ss_pred             ceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCC---
Q 017981          262 LTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGAC---  338 (363)
Q Consensus       262 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~---  338 (363)
                      |+.+.+..+.-.      +... .....-+..+++|+.|+|..+++.. +.-....+ .+|.+++|++|++..|---   
T Consensus       187 leevr~~qN~I~------~eG~-~al~eal~~~~~LevLdl~DNtft~-egs~~Lak-aL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  187 LEEVRLSQNGIR------PEGV-TALAEALEHCPHLEVLDLRDNTFTL-EGSVALAK-ALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             cceEEEeccccc------Cchh-HHHHHHHHhCCcceeeecccchhhh-HHHHHHHH-Hhcccchheeeccccccccccc
Confidence            999887655421      2222 3477788899999999999987621 11111123 6788999999999998531   


Q ss_pred             ChHHHHHHHHhCCCCcceEEeeec
Q 017981          339 GWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       339 ~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      .......+-+..|+|+.|.+.+|.
T Consensus       258 a~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHHHHHHhccCCCCceeccCcch
Confidence            123455566678999999988774

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=6e-09  Score=88.33  Aligned_cols=180  Identities=18%  Similarity=0.165  Sum_probs=121.3

Q ss_pred             ccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcc
Q 017981          164 SAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLE  242 (363)
Q Consensus       164 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~  242 (363)
                      .|++|+|+...++...+..+++.|..|+.|.|++...++. -...++ ...|+.|++..|...+. .....+..++..|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~-n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTE-NALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccch-hHHHHHHHhhhhHh
Confidence            5888888888887778888888888888888888776554 233333 37788888888865433 12223446777888


Q ss_pred             eEEEeecCCCce----eeec-CCCceEEEEeeeeceeccCCCchhhHH-HHHHHhhccCcceEEEEeCCccccccccccc
Q 017981          243 QLYIRDHGPGLY----VVHE-LHSLTKAVVDYGIECILDYDSPEDVAQ-AVVDMLRDIKNIKSLSLSSGTMFALDRLDYA  316 (363)
Q Consensus       243 ~L~l~~~~~~~~----~~~~-~~~L~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~  316 (363)
                      .|.++-|.....    ++.+ -+.|+.+++...-.         .... .+..+.+.++++.+|+++.+-+.+..    +
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr---------nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~----~  330 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR---------NLQKSHLSTLVRRCPNLVHLDLSDSVMLKND----C  330 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh---------hhhhhHHHHHHHhCCceeeeccccccccCch----H
Confidence            888887654321    1222 24566665543321         1111 37788899999999999997553322    2


Q ss_pred             cCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEee
Q 017981          317 NDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEE  360 (363)
Q Consensus       317 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~  360 (363)
                      +. .+.+|+-|++|.++-|.....+.+. -+...|.|..|++.+
T Consensus       331 ~~-~~~kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  331 FQ-EFFKFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFG  372 (419)
T ss_pred             HH-HHHhcchheeeehhhhcCCChHHee-eeccCcceEEEEecc
Confidence            22 4567888999999999875554444 358889999998875

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.26  E-value=5.2e-08  Score=78.58  Aligned_cols=126  Identities=25%  Similarity=0.206  Sum_probs=44.3

Q ss_pred             CceEEEEEcCCCccccCCcccc-cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          117 NVREIEISLNDDECIELPHCIY-TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      ++++|+++.......  . .+. .+.+|+.|+|++|.+....+...+++|++|++.++.+++-+ ..+...||+|++|++
T Consensus        20 ~~~~L~L~~n~I~~I--e-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--E-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-
T ss_pred             ccccccccccccccc--c-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEEC
Confidence            567777776654222  1 233 46889999999999887778888999999999999886531 223356899999999


Q ss_pred             eeeEeCCCceeEE-E-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEe
Q 017981          196 KGYIYGTDSVTLN-I-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIR  247 (363)
Q Consensus       196 ~~c~~~~~~~~l~-i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~  247 (363)
                      .+|..... ..+. . ..|+|+.|.+.+|.+......-..+...+|+|+.|+..
T Consensus        96 ~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   96 SNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCcCCCh-HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            99886554 2221 1 23777777777765543311112223445666665433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.20  E-value=2.2e-08  Score=93.09  Aligned_cols=206  Identities=17%  Similarity=0.196  Sum_probs=109.2

Q ss_pred             cccCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEE
Q 017981          130 CIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN  208 (363)
Q Consensus       130 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~  208 (363)
                      ...+|..+|++..|+.|+|+.+.+...| +...-+++-.|+|+++.+.+- -..++.+..-|-.|+|+.+..+.+ ..-.
T Consensus        92 nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI-Pn~lfinLtDLLfLDLS~NrLe~L-PPQ~  169 (1255)
T KOG0444|consen   92 NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI-PNSLFINLTDLLFLDLSNNRLEML-PPQI  169 (1255)
T ss_pred             cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC-CchHHHhhHhHhhhccccchhhhc-CHHH
Confidence            3456667777777777777777666543 333556666777776665332 133444455555666666654443 1111


Q ss_pred             EecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCC----ceeeecCCCceEEEEeeeeceeccCCCchhhH
Q 017981          209 IPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG----LYVVHELHSLTKAVVDYGIECILDYDSPEDVA  284 (363)
Q Consensus       209 i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~  284 (363)
                      -+-..|++|.++++-..-.   ...-.-++.+|+.|++++..-.    ...+..+.+|.+++++-+...           
T Consensus       170 RRL~~LqtL~Ls~NPL~hf---QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-----------  235 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNPLNHF---QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-----------  235 (1255)
T ss_pred             HHHhhhhhhhcCCChhhHH---HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-----------
Confidence            1124566666666532110   0111233444555555553211    223344455555554433221           


Q ss_pred             HHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          285 QAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       285 ~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                       .+...+-.+++|+.|.++++.+   .-+..+    .....+|++|+++.+.   ...++.-+-..|.|+.|.+..|+
T Consensus       236 -~vPecly~l~~LrrLNLS~N~i---teL~~~----~~~W~~lEtLNlSrNQ---Lt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  236 -IVPECLYKLRNLRRLNLSGNKI---TELNMT----EGEWENLETLNLSRNQ---LTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             -cchHHHhhhhhhheeccCcCce---eeeecc----HHHHhhhhhhccccch---hccchHHHhhhHHHHHHHhccCc
Confidence             1566677778888888888766   433332    2245567777777653   33455555556666666665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.15  E-value=4.6e-06  Score=82.37  Aligned_cols=35  Identities=14%  Similarity=0.046  Sum_probs=22.4

Q ss_pred             CcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          326 FLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       326 ~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      +|+.|++..+.-   ..++.-+.++++|+.|+++.|++
T Consensus       423 ~L~~L~Ls~NqL---t~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        423 GLLSLSVYRNQL---TRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             hhhhhhhccCcc---cccChHHhhccCCCeEECCCCCC
Confidence            455555554432   23444566788999999988864

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.13  E-value=7.5e-08  Score=91.85  Aligned_cols=132  Identities=20%  Similarity=0.166  Sum_probs=77.5

Q ss_pred             hCCceEEEEEcCCC-ccccCCcccccCCcccEEEeccc-ccccC------CCcccCcccceeeeeeEE-EccchHHHHhc
Q 017981          115 MRNVREIEISLNDD-ECIELPHCIYTCKTLEVLKLDMN-FFIKT------PPTIFFPSAKILHVILNT-IDNNFSDWLFS  185 (363)
Q Consensus       115 ~~~l~~L~l~~~~~-~~~~l~~~~~~~~~L~~L~L~~~-~~~~~------~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~  185 (363)
                      .+.++++.+..+.. ....+-.....|++|+.|.++++ .....      .....+++|+.|++.++. +++.++..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            35777777765432 11123445556888888888763 22211      122356788888888887 55557777777


Q ss_pred             cCCccceEEEeeeE-e--CCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEee
Q 017981          186 KCPALEDLSIKGYI-Y--GTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRD  248 (363)
Q Consensus       186 ~cp~Le~L~L~~c~-~--~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~  248 (363)
                      .||+||+|.+..|. .  .++ ..+.-.++.|++|++.+|....+ .....+...+|+|+.|.+.+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHGLTD-SGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hCCCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCccchH-HHHHHHHHhCcchhhhhhhh
Confidence            78888888877776 2  222 23333457788888888765432 11222234456665555443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.10  E-value=7.8e-08  Score=93.10  Aligned_cols=208  Identities=19%  Similarity=0.216  Sum_probs=122.6

Q ss_pred             hhHHHHHHHHHhCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcc-cCcccceeeeeeEEEccc--hH
Q 017981          104 SRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTI-FFPSAKILHVILNTIDNN--FS  180 (363)
Q Consensus       104 ~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~--~l  180 (363)
                      ..+..|+..+  .+++-+.......  ..+|..++...+|++|....|.+...+.+. .++.|++|+|..+.+..-  .+
T Consensus       254 ~~lp~wi~~~--~nle~l~~n~N~l--~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~  329 (1081)
T KOG0618|consen  254 SNLPEWIGAC--ANLEALNANHNRL--VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF  329 (1081)
T ss_pred             hcchHHHHhc--ccceEecccchhH--HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHH
Confidence            4455787764  4788877765443  567777888888999988888887655554 599999999999876543  11


Q ss_pred             HHHh----------------------ccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEec
Q 017981          181 DWLF----------------------SKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRA  238 (363)
Q Consensus       181 ~~ll----------------------~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  238 (363)
                      .+++                      ...+.|+.|++.+|.+.+....+-...++||.|++.+|...+.   ........
T Consensus       330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f---pas~~~kl  406 (1081)
T KOG0618|consen  330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF---PASKLRKL  406 (1081)
T ss_pred             HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC---CHHHHhch
Confidence            1111                      0234566666666654432011112236777777777754322   11223455


Q ss_pred             cCcceEEEeecCCCce--eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccc
Q 017981          239 PNLEQLYIRDHGPGLY--VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYA  316 (363)
Q Consensus       239 p~L~~L~l~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~  316 (363)
                      +.||.|.++|+.....  .+.++++|..+....+...             .+--+.+++.|+.++++.+.+   +.+.- 
T Consensus       407 e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-------------~fPe~~~l~qL~~lDlS~N~L---~~~~l-  469 (1081)
T KOG0618|consen  407 EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-------------SFPELAQLPQLKVLDLSCNNL---SEVTL-  469 (1081)
T ss_pred             HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-------------echhhhhcCcceEEecccchh---hhhhh-
Confidence            6677777777654322  2444555555443322211             122467788888888888766   33222 


Q ss_pred             cCCCCCCCCCcceEEEEeccC
Q 017981          317 NDHSFPTFPFLNRLEVEGVGA  337 (363)
Q Consensus       317 ~~~~~~~~~~L~~L~l~~~~~  337 (363)
                      .+ ..|. ++|+.|+++++..
T Consensus       470 ~~-~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  470 PE-ALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             hh-hCCC-cccceeeccCCcc
Confidence            11 2333 6788888888764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.08  E-value=5.9e-08  Score=90.31  Aligned_cols=222  Identities=15%  Similarity=0.100  Sum_probs=120.0

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEeccccccc---CCCcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK---TPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      ++++|++.-...  ..+--.+...+.|+++.++.+.+..   ++....+..|+.|+|+++....-  -.=+....++-.|
T Consensus        56 kLEHLs~~HN~L--~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev--P~~LE~AKn~iVL  131 (1255)
T KOG0444|consen   56 KLEHLSMAHNQL--ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV--PTNLEYAKNSIVL  131 (1255)
T ss_pred             hhhhhhhhhhhh--HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc--chhhhhhcCcEEE
Confidence            566666532221  1222344455666666666665542   13344667777777777765432  1113345667777


Q ss_pred             EEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeeece
Q 017981          194 SIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIEC  273 (363)
Q Consensus       194 ~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~  273 (363)
                      .|+++..+.+...+.|.-..|-.|+++++.....    ..-......|++|.++++...-+.+..+|+++.+.+--... 
T Consensus       132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L----PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~-  206 (1255)
T KOG0444|consen  132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML----PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN-  206 (1255)
T ss_pred             EcccCccccCCchHHHhhHhHhhhccccchhhhc----CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc-
Confidence            7777776666444555556777777777754322    11223455677788887766656666666666554311111 


Q ss_pred             eccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCC
Q 017981          274 ILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKL  353 (363)
Q Consensus       274 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L  353 (363)
                            .+.--.++..-+..+.+|..++++.+.+   -.+.++    +-.+++|+.|+++++........   ...--+|
T Consensus       207 ------TqRTl~N~Ptsld~l~NL~dvDlS~N~L---p~vPec----ly~l~~LrrLNLS~N~iteL~~~---~~~W~~l  270 (1255)
T KOG0444|consen  207 ------TQRTLDNIPTSLDDLHNLRDVDLSENNL---PIVPEC----LYKLRNLRRLNLSGNKITELNMT---EGEWENL  270 (1255)
T ss_pred             ------ccchhhcCCCchhhhhhhhhccccccCC---CcchHH----HhhhhhhheeccCcCceeeeecc---HHHHhhh
Confidence                  1111122444466677777777777655   333222    22456788888887653221111   1112356


Q ss_pred             cceEEeeecC
Q 017981          354 ESIVFEEVRM  363 (363)
Q Consensus       354 ~~L~l~~~~~  363 (363)
                      ++|.++-|++
T Consensus       271 EtLNlSrNQL  280 (1255)
T KOG0444|consen  271 ETLNLSRNQL  280 (1255)
T ss_pred             hhhccccchh
Confidence            7777666653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.04  E-value=4.2e-06  Score=82.84  Aligned_cols=213  Identities=14%  Similarity=0.089  Sum_probs=101.3

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .+++.|.+..+..  ..+|..++  ++|+.|++++|.+...|. .-.++|+.|+|.+|.+..-  ..-+  ..+|+.|.+
T Consensus       199 ~~L~~L~Ls~N~L--tsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~L~~L--P~~l--~s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNEL--KSLPENLQ--GNIKTLYANSNQLTSIPA-TLPDTIQEMELSINRITEL--PERL--PSALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCC--CcCChhhc--cCCCEEECCCCccccCCh-hhhccccEEECcCCccCcC--ChhH--hCCCCEEEC
Confidence            4677777766543  24555433  578888888877664332 1234677777777765421  1111  235666666


Q ss_pred             eeeEeCCCceeEEEecCCcceEEEEecCCccccCCc--------------eEE-EEeccCcceEEEeecCCCceeeecCC
Q 017981          196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITK--------------YKV-IIRAPNLEQLYIRDHGPGLYVVHELH  260 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~--------------~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~  260 (363)
                      .+|.+..+...  + .++|+.|++.+|.........              ..+ ....++|+.|.++++....+...-.+
T Consensus       270 s~N~L~~LP~~--l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~  346 (754)
T PRK15370        270 FHNKISCLPEN--L-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPP  346 (754)
T ss_pred             cCCccCccccc--c-CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcC
Confidence            66554332110  1 245666666666432210000              000 00113444444444433222111123


Q ss_pred             CceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCCh
Q 017981          261 SLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGW  340 (363)
Q Consensus       261 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  340 (363)
                      +|+.+.+..+.-.        .    +...+  .++|+.|+++++.+   ..+..    .+  ..+|+.|+++.+.-...
T Consensus       347 sL~~L~Ls~N~L~--------~----LP~~l--p~~L~~LdLs~N~L---t~LP~----~l--~~sL~~LdLs~N~L~~L  403 (754)
T PRK15370        347 ELQVLDVSKNQIT--------V----LPETL--PPTITTLDVSRNAL---TNLPE----NL--PAALQIMQASRNNLVRL  403 (754)
T ss_pred             cccEEECCCCCCC--------c----CChhh--cCCcCEEECCCCcC---CCCCH----hH--HHHHHHHhhccCCcccC
Confidence            4444444322110        0    00000  13566666666554   22111    11  12466677766543222


Q ss_pred             -HHHHHHHHhCCCCcceEEeeecC
Q 017981          341 -LSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       341 -~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                       ..+..+...+|++..|.+..|.+
T Consensus       404 P~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        404 PESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             chhHHHHhhcCCCccEEEeeCCCc
Confidence             34666777788888888887754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.02  E-value=1.2e-07  Score=76.44  Aligned_cols=107  Identities=17%  Similarity=0.091  Sum_probs=28.7

Q ss_pred             ccCCcccEEEecccccccCCCcc-cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981          138 YTCKTLEVLKLDMNFFIKTPPTI-FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR  216 (363)
Q Consensus       138 ~~~~~L~~L~L~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~  216 (363)
                      .++.++++|+|.++.+....... .+.+|+.|+|++|.+..=  .. +..++.|++|.+.+|....+...+.-..|+|++
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cC-ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            45667888999998888554444 578888888888877643  21 456788888888888755441111112477777


Q ss_pred             EEEEecCCccccCCceEEEEeccCcceEEEeec
Q 017981          217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH  249 (363)
Q Consensus       217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  249 (363)
                      |.+.+|...+. .... ....+|+|+.|++.|+
T Consensus        93 L~L~~N~I~~l-~~l~-~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   93 LYLSNNKISDL-NELE-PLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             EE-TTS---SC-CCCG-GGGG-TT--EEE-TT-
T ss_pred             EECcCCcCCCh-HHhH-HHHcCCCcceeeccCC
Confidence            77777765432 1111 1123455555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.01  E-value=1.3e-05  Score=79.31  Aligned_cols=113  Identities=19%  Similarity=0.191  Sum_probs=64.7

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEe
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK  196 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~  196 (363)
                      +-..|++.....  ..+|..+.  ++|+.|.+..|.+...|.  ..++|++|+|.+|.++.-  .   ...++|++|.+.
T Consensus       202 ~~~~LdLs~~~L--tsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsL--P---~lp~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSL--P---VLPPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCC--CcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcc--c---Ccccccceeecc
Confidence            455566654443  35666543  478888888877765442  357788888888766532  1   124677777777


Q ss_pred             eeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981          197 GYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP  251 (363)
Q Consensus       197 ~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  251 (363)
                      .|.+..+ ..   ..++|+.|.+.+|....       +....|+|+.|+++++..
T Consensus       271 ~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~-------LP~~p~~L~~LdLS~N~L  314 (788)
T PRK15387        271 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-------LPVLPPGLQELSVSDNQL  314 (788)
T ss_pred             CCchhhh-hh---chhhcCEEECcCCcccc-------ccccccccceeECCCCcc
Confidence            7654333 11   12456667666664421       112235677777766544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.99  E-value=9.6e-07  Score=75.33  Aligned_cols=206  Identities=17%  Similarity=0.122  Sum_probs=127.6

Q ss_pred             cccCCcccccCCcccEEEecccccccC----------CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE
Q 017981          130 CIELPHCIYTCKTLEVLKLDMNFFIKT----------PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI  199 (363)
Q Consensus       130 ~~~l~~~~~~~~~L~~L~L~~~~~~~~----------~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  199 (363)
                      .+.+...+..|..|++|..++..-+-.          .....|.+|+++.++.|.-  .++..+...=|.|+.+.+.+..
T Consensus       171 k~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~  248 (490)
T KOG1259|consen  171 KYDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTT  248 (490)
T ss_pred             ccchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch--hheeceeecCchhheeeeeccc
Confidence            345555566688999999887543311          1223688999999988853  3555556667889988887653


Q ss_pred             eCCC----------------------ceeEEEec-CCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-e
Q 017981          200 YGTD----------------------SVTLNIPS-LTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-V  255 (363)
Q Consensus       200 ~~~~----------------------~~~l~i~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~  255 (363)
                      ....                      +....+.+ +.|.+|++++|.+...    ..-+.-+|.++.|.++.+....+ .
T Consensus       249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i----DESvKL~Pkir~L~lS~N~i~~v~n  324 (490)
T KOG1259|consen  249 IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI----DESVKLAPKLRRLILSQNRIRTVQN  324 (490)
T ss_pred             ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhh----hhhhhhccceeEEeccccceeeehh
Confidence            1110                      01112222 5688999998865422    12234579999999998765432 2


Q ss_pred             eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981          256 VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV  335 (363)
Q Consensus       256 ~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~  335 (363)
                      +..+++|+.++++.+..            ..+..+=..+.|+++|.+..+.+   +.++     .+..+..|..|++.++
T Consensus       325 La~L~~L~~LDLS~N~L------------s~~~Gwh~KLGNIKtL~La~N~i---E~LS-----GL~KLYSLvnLDl~~N  384 (490)
T KOG1259|consen  325 LAELPQLQLLDLSGNLL------------AECVGWHLKLGNIKTLKLAQNKI---ETLS-----GLRKLYSLVNLDLSSN  384 (490)
T ss_pred             hhhcccceEeecccchh------------HhhhhhHhhhcCEeeeehhhhhH---hhhh-----hhHhhhhheecccccc
Confidence            56788899888875543            12455555677888888877766   5443     2334555777777776


Q ss_pred             cCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          336 GACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       336 ~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      ...+.+.+.+| .+.|.|+.+.+..|.
T Consensus       385 ~Ie~ldeV~~I-G~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  385 QIEELDEVNHI-GNLPCLETLRLTGNP  410 (490)
T ss_pred             chhhHHHhccc-ccccHHHHHhhcCCC
Confidence            55444444443 566777777665543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.92  E-value=1.3e-05  Score=79.35  Aligned_cols=119  Identities=16%  Similarity=0.097  Sum_probs=77.5

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEe
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK  196 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~  196 (363)
                      +..++++.....  ..+|..+  .++|+.|+|++|.+...|. ..+++|++|+|.++.++.-  ..-  -.++|+.|.|.
T Consensus       179 ~~~~L~L~~~~L--tsLP~~I--p~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~LtsL--P~~--l~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGL--TTIPACI--PEQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTSI--PAT--LPDTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCc--CcCCccc--ccCCcEEEecCCCCCcCCh-hhccCCCEEECCCCccccC--Chh--hhccccEEECc
Confidence            566677654432  3556543  3579999999998885543 2347999999999977532  111  13589999999


Q ss_pred             eeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc
Q 017981          197 GYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL  253 (363)
Q Consensus       197 ~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~  253 (363)
                      +|....+...  + .++|+.|++++|.....    ..  .-.++|+.|.++++....
T Consensus       250 ~N~L~~LP~~--l-~s~L~~L~Ls~N~L~~L----P~--~l~~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        250 INRITELPER--L-PSALQSLDLFHNKISCL----PE--NLPEELRYLSVYDNSIRT  297 (754)
T ss_pred             CCccCcCChh--H-hCCCCEEECcCCccCcc----cc--ccCCCCcEEECCCCcccc
Confidence            9876544111  1 25899999998765421    00  112589999999876543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=9.3e-06  Score=69.35  Aligned_cols=202  Identities=17%  Similarity=0.188  Sum_probs=129.1

Q ss_pred             cccEEEecccccccCC---C-cccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981          142 TLEVLKLDMNFFIKTP---P-TIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR  216 (363)
Q Consensus       142 ~L~~L~L~~~~~~~~~---~-~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~  216 (363)
                      -+.-|.+.+|.+...-   . ...+..++.|+|.++.+.+. .+..++.+.|.|+.|.|..|.....-..+-.+..+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            4445566666665321   1 12578899999999999888 88999999999999999998743320223355689999


Q ss_pred             EEEEecCCccccCCceEEEEeccCcceEEEeecCCCceee-----ec-CCCceEEEEeeeeceeccCCCchhhHHHHHHH
Q 017981          217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVV-----HE-LHSLTKAVVDYGIECILDYDSPEDVAQAVVDM  290 (363)
Q Consensus       217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~-----~~-~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~  290 (363)
                      |.+++....-  ..........|.++.|+++++....+-+     +. -+.+..  ++..+.       +.....+..++
T Consensus       126 lVLNgT~L~w--~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~t--lh~~~c-------~~~~w~~~~~l  194 (418)
T KOG2982|consen  126 LVLNGTGLSW--TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLT--LHQLPC-------LEQLWLNKNKL  194 (418)
T ss_pred             EEEcCCCCCh--hhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhh--hhcCCc-------HHHHHHHHHhH
Confidence            9999875321  1122344667888888888764322211     10 011111  111111       33344457788


Q ss_pred             hhccCcceEEEEeCCcccccccccc--ccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          291 LRDIKNIKSLSLSSGTMFALDRLDY--ANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       291 l~~l~~l~~L~l~~~~~~~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      -+.+|++..+.++.+++   +..+.  ..+ ++|.++   -|+++.....+|+++.. |..+|.|..|.+..+.
T Consensus       195 ~r~Fpnv~sv~v~e~Pl---K~~s~ek~se-~~p~~~---~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGPL---KTESSEKGSE-PFPSLS---CLNLGANNIDSWASVDA-LNGFPQLVDLRVSENP  260 (418)
T ss_pred             HhhcccchheeeecCcc---cchhhcccCC-CCCcch---hhhhcccccccHHHHHH-HcCCchhheeeccCCc
Confidence            88899999999999987   66554  344 444444   56677666567777664 4678888888776543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.84  E-value=4.2e-07  Score=71.22  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=42.3

Q ss_pred             ccccCCcccEEEecccccccC-CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE
Q 017981          136 CIYTCKTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI  199 (363)
Q Consensus       136 ~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  199 (363)
                      .+++..+.+.|.|+-+.+... |..+.+.+|+.|++.++.+.+-  -.-++..|.|+.|.+..+.
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~l--p~~issl~klr~lnvgmnr   90 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEEL--PTSISSLPKLRILNVGMNR   90 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhc--Chhhhhchhhhheecchhh
Confidence            456777788888887777644 5556778888888887776443  2225667777777776654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.81  E-value=3.4e-07  Score=87.35  Aligned_cols=111  Identities=21%  Similarity=0.164  Sum_probs=56.8

Q ss_pred             CCcccEEEecccccccC----CCcccCcccceeeeeeE-E-Eccc--hHHHHhccCCccceEEEeeeE-eCCC-ceeEEE
Q 017981          140 CKTLEVLKLDMNFFIKT----PPTIFFPSAKILHVILN-T-IDNN--FSDWLFSKCPALEDLSIKGYI-YGTD-SVTLNI  209 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~~~----~~~~~~~~L~~L~L~~~-~-~~~~--~l~~ll~~cp~Le~L~L~~c~-~~~~-~~~l~i  209 (363)
                      ++.|+.|.+.+|.....    +....+++|+.|++.++ . +...  ....+...|+.|++|.+..|. ..+. -..+.-
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            66666666666644322    22335666777776652 1 1111  233455666777777766665 2111 012222


Q ss_pred             ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981          210 PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP  251 (363)
Q Consensus       210 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  251 (363)
                      .|+.|+.|.+.+|...++ .+...+...+|.|++|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccch-hHHHHHHHhcCcccEEeeecCcc
Confidence            356677776655553222 23334445566677776666543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.76  E-value=1.1e-06  Score=77.81  Aligned_cols=36  Identities=14%  Similarity=0.262  Sum_probs=26.8

Q ss_pred             CCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          325 PFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       325 ~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      .+|+.|++..+   +...++.++++|.+|++|.+.+|.|
T Consensus       505 ~nL~tLDL~nN---dlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  505 RNLTTLDLQNN---DLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             hhcceeccCCC---chhhCChhhccccceeEEEecCCcc
Confidence            34455555443   5667899999999999999998864

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.65  E-value=1.9e-05  Score=77.63  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=42.2

Q ss_pred             CcccEEEeccccccc-CC---CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeC
Q 017981          141 KTLEVLKLDMNFFIK-TP---PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYG  201 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~-~~---~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~  201 (363)
                      .+|++|+++|...-. .+   -..-||+|++|.+.+..+..+++..+..++|+|..|+++++...
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence            567777777643321 11   12358888888888888877778888888888888888876543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.60  E-value=2.2e-06  Score=83.31  Aligned_cols=185  Identities=15%  Similarity=0.141  Sum_probs=105.9

Q ss_pred             cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEecc
Q 017981          161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAP  239 (363)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p  239 (363)
                      .-.+|++++++++.+..  +-.++..|++|+.+.+..+.+-..  ..++. ..+|++|.+..|....    .........
T Consensus       239 ~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~~l--p~ri~~~~~L~~l~~~~nel~y----ip~~le~~~  310 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLVAL--PLRISRITSLVSLSAAYNELEY----IPPFLEGLK  310 (1081)
T ss_pred             ccccceeeecchhhhhc--chHHHHhcccceEecccchhHHhh--HHHHhhhhhHHHHHhhhhhhhh----CCCcccccc
Confidence            34578888888887754  447788899999999988775222  12222 3677777777775432    122223345


Q ss_pred             CcceEEEeecCCCceee---ecCCC-ceEEE---Eeeeeceec----------cCCCchhhHHHHHHHhhccCcceEEEE
Q 017981          240 NLEQLYIRDHGPGLYVV---HELHS-LTKAV---VDYGIECIL----------DYDSPEDVAQAVVDMLRDIKNIKSLSL  302 (363)
Q Consensus       240 ~L~~L~l~~~~~~~~~~---~~~~~-L~~~~---l~~~~~~~~----------~~~~~~~~~~~~~~~l~~l~~l~~L~l  302 (363)
                      .|++|++..+......-   ..++. |..+.   ........+          -|...+...+..+..+.++.+||.|++
T Consensus       311 sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  311 SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL  390 (1081)
T ss_pred             eeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence            67777777654332210   00000 10000   000000011          133355566678999999999999999


Q ss_pred             eCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          303 SSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       303 ~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      +.+.+   ..+...   .+..++.|++|.++++.-   ..++.=+.+|+.|++|..+.|+
T Consensus       391 syNrL---~~fpas---~~~kle~LeeL~LSGNkL---~~Lp~tva~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  391 SYNRL---NSFPAS---KLRKLEELEELNLSGNKL---TTLPDTVANLGRLHTLRAHSNQ  441 (1081)
T ss_pred             ccccc---ccCCHH---HHhchHHhHHHhcccchh---hhhhHHHHhhhhhHHHhhcCCc
Confidence            99877   433221   223677788999998743   3344445555555555555444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.34  E-value=8.2e-05  Score=48.96  Aligned_cols=58  Identities=24%  Similarity=0.251  Sum_probs=38.6

Q ss_pred             CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE
Q 017981          141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI  199 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  199 (363)
                      ++|++|.+++|.+...+  .+.++++|++|++.++.+..-. ...+.++|+|++|.+.+|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence            46777888877666432  3456778888888877664321 2346778888888887753

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.29  E-value=7.9e-05  Score=66.21  Aligned_cols=225  Identities=18%  Similarity=0.118  Sum_probs=120.2

Q ss_pred             CceEEEEEcCCCccccCCccccc-CCcccEEEecccccccC--CCcccCcccceeeeee-EEEccc---hH---------
Q 017981          117 NVREIEISLNDDECIELPHCIYT-CKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVIL-NTIDNN---FS---------  180 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~-~~~~~~---~l---------  180 (363)
                      ...++.|+-...  ..+|+..|+ .++|+.|+|+.|.+...  ..+.++++|.+|.+.+ +.+++-   .+         
T Consensus        68 ~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            566667765553  467876655 89999999999877642  3355788888887777 665532   11         


Q ss_pred             -----------HHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCcccc---------------CCceEE
Q 017981          181 -----------DWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDY---------------ITKYKV  234 (363)
Q Consensus       181 -----------~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~---------------~~~~~~  234 (363)
                                 +..+...|+|..|.+-++....+.+.....-..++.+++.-+.+..+.               .+....
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence                       223445677777777776533331111111245555555544311100               000000


Q ss_pred             ------------EEecc----CcceE--EEeecC-CC----ceeeecCCCceEEEEeeeecee--c-----------cCC
Q 017981          235 ------------IIRAP----NLEQL--YIRDHG-PG----LYVVHELHSLTKAVVDYGIECI--L-----------DYD  278 (363)
Q Consensus       235 ------------~~~~p----~L~~L--~l~~~~-~~----~~~~~~~~~L~~~~l~~~~~~~--~-----------~~~  278 (363)
                                  .+++.    .++.+  .+++.. ..    ...+..+|+|+.++++.+.-..  .           -|.
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence                        00000    01111  111111 11    1124555666666555443211  1           133


Q ss_pred             CchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC---CChHHHHHHHHh
Q 017981          279 SPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA---CGWLSLAHIFSR  349 (363)
Q Consensus       279 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~l~~ll~~  349 (363)
                      +.+.+..--..++.++++|+.|++.++.+   ..+...   .+..+..|.+|++..++.   +...++..-++.
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~i---t~~~~~---aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~  373 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQI---TTVAPG---AFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK  373 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCee---EEEecc---cccccceeeeeehccCcccCccchHHHHHHHhh
Confidence            45555555788899999999999999887   555441   222455578888876543   344666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.28  E-value=0.00013  Score=61.74  Aligned_cols=177  Identities=15%  Similarity=0.091  Sum_probs=96.8

Q ss_pred             ccCcccceeeeeeEEEccc---hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEE
Q 017981          160 IFFPSAKILHVILNTIDNN---FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVII  236 (363)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~  236 (363)
                      ..||.|+..+|+++.|...   -+..+++.-..|++|.|.+|..+.. ..-+| ...|..|..            .+-+.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~-aG~ri-gkal~~la~------------nKKaa  154 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI-AGGRI-GKALFHLAY------------NKKAA  154 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc-chhHH-HHHHHHHHH------------Hhhhc
Confidence            3566666666666655543   5566677777788888887763322 11111 122222211            12335


Q ss_pred             eccCcceEEEeecCCCce-------eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccc-
Q 017981          237 RAPNLEQLYIRDHGPGLY-------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMF-  308 (363)
Q Consensus       237 ~~p~L~~L~l~~~~~~~~-------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~-  308 (363)
                      +.|.|+.+....+.....       .++.-..|..+.+..+.-.      |.....-.+--+.-+.+|+.|+|..+.+. 
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr------pegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR------PEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC------cchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            678888888776644321       1222345677766544321      33322223333455778999999887652 


Q ss_pred             -cccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH-----hCCCCcceEEeee
Q 017981          309 -ALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS-----RMPKLESIVFEEV  361 (363)
Q Consensus       309 -~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~-----~~p~L~~L~l~~~  361 (363)
                       ...++.+    ..+..++|++|++..|-. ...+...+++     ..|+|..|-.+-|
T Consensus       229 ~gS~~La~----al~~W~~lrEL~lnDCll-s~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         229 EGSRYLAD----ALCEWNLLRELRLNDCLL-SNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             hhHHHHHH----Hhcccchhhhccccchhh-ccccHHHHHHHhhhhcCCCccccccchh
Confidence             1112222    456777789999988854 3344444444     3577777655543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.25  E-value=2.4e-05  Score=65.72  Aligned_cols=131  Identities=21%  Similarity=0.067  Sum_probs=86.8

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeE--EEccchHHHHhccCCccceEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILN--TIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      .++++.+..+....-.+....-....|..|++.++.+.+..++-.+|+|+.|.++.+  ++.. ++.-++..||+|++|.
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~   97 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLN   97 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEe
Confidence            344555544332223345444557788888899888887777778899999999999  4443 5677788899999999


Q ss_pred             EeeeEeCCCceeEEEe--cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec
Q 017981          195 IKGYIYGTDSVTLNIP--SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH  249 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  249 (363)
                      +..|....+ ..+.-.  -++|++|.+.+|........-.++..-+|+|.+|+..+.
T Consensus        98 ls~Nki~~l-stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen   98 LSGNKIKDL-STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             ecCCccccc-cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            999875544 222221  267889999998754321222233345678888765543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.09  E-value=5.4e-05  Score=74.44  Aligned_cols=137  Identities=18%  Similarity=0.150  Sum_probs=84.8

Q ss_pred             HHhCCceEEEEEcCCCccccCCccccc-CCcccEEEecccccccC---CCcccCcccceeeeeeEEEccchHHHHhccCC
Q 017981          113 ATMRNVREIEISLNDDECIELPHCIYT-CKTLEVLKLDMNFFIKT---PPTIFFPSAKILHVILNTIDNNFSDWLFSKCP  188 (363)
Q Consensus       113 ~~~~~l~~L~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp  188 (363)
                      ..+.++++|+++.........|..++. +|+|++|.+++-.+...   .-..+||||..||++++.+++-   .-++..+
T Consensus       119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk  195 (699)
T KOG3665|consen  119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK  195 (699)
T ss_pred             HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc
Confidence            344588888887755434445555555 88899999888766533   1234789999999988887654   2256678


Q ss_pred             ccceEEEeeeEeCCCceeEEEe-cCCcceEEEEecCCcccc---CCceEEEEeccCcceEEEeecCCC
Q 017981          189 ALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDY---ITKYKVIIRAPNLEQLYIRDHGPG  252 (363)
Q Consensus       189 ~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~---~~~~~~~~~~p~L~~L~l~~~~~~  252 (363)
                      +||.|.+++-.+........+- -++|+.|+++........   ....+....+|+|+.|+.+|....
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            8888888874433220111222 367888888776543221   001122234788888888876554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=7.6e-05  Score=63.92  Aligned_cols=180  Identities=16%  Similarity=0.106  Sum_probs=116.9

Q ss_pred             CCceEEEEEcCCCccc-cCCcccccCCcccEEEecccccccCCCc--ccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISLNDDECI-ELPHCIYTCKTLEVLKLDMNFFIKTPPT--IFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      ..++++++.++....+ ++...+-++|.|+.|+|+.|.+..+.+.  ....+|++|.|.+...+-...++.+...|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            4899999976654322 3445666789999999999988865332  467799999999987765677888999999999


Q ss_pred             EEEeeeEeC----CCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce----eeecCCCceE
Q 017981          193 LSIKGYIYG----TDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY----VVHELHSLTK  264 (363)
Q Consensus       193 L~L~~c~~~----~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~~~L~~  264 (363)
                      |.++.|...    +. ....-.++.+++|+...|...-+ .....+....|+++.+.+-.+..-..    ..+.+|.+.-
T Consensus       151 lHmS~N~~rq~n~Dd-~c~e~~s~~v~tlh~~~c~~~~w-~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDD-NCIEDWSTEVLTLHQLPCLEQLW-LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhccchhhhhcccc-ccccccchhhhhhhcCCcHHHHH-HHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            999998521    12 34455568899999999854322 22344556678888887776643211    1223343332


Q ss_pred             EEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981          265 AVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       265 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  307 (363)
                      +.+....-         + .-+-...+.+++.+..|.++.+++
T Consensus       229 LnL~~~~i---------d-swasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  229 LNLGANNI---------D-SWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             hhhccccc---------c-cHHHHHHHcCCchhheeeccCCcc
Confidence            22221110         0 001345567778888888877665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.05  E-value=1.1e-05  Score=63.47  Aligned_cols=128  Identities=21%  Similarity=0.183  Sum_probs=80.8

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC-CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      .+++.|.++...  -.++|..+.++++|+.|+++-+.+... .++.+||.|+.|+|.++......+-.=+-....|+.|+
T Consensus        56 ~nlevln~~nnq--ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   56 KNLEVLNLSNNQ--IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhhcccch--hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            467777776655  358898899999999999998887754 57889999999999988766542222122345677777


Q ss_pred             EeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981          195 IKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP  251 (363)
Q Consensus       195 L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  251 (363)
                      |.++.+.-+  .-.+ .-.+|+.|.+.++...+.    .+-.-....|++|++.|+..
T Consensus       134 l~dndfe~l--p~dvg~lt~lqil~lrdndll~l----pkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  134 LGDNDFEIL--PPDVGKLTNLQILSLRDNDLLSL----PKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hcCCCcccC--ChhhhhhcceeEEeeccCchhhC----cHHHHHHHHHHHHhccccee
Confidence            777664433  1111 124566666666543221    11223445677777777643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.98  E-value=0.0015  Score=53.07  Aligned_cols=104  Identities=18%  Similarity=0.114  Sum_probs=60.9

Q ss_pred             CcccEEEecccccccCCCcccCcccceeeeeeEEEccc--hHHHHhccCCccceEEEeeeEeCCCcee--EEEecCCcce
Q 017981          141 KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNN--FSDWLFSKCPALEDLSIKGYIYGTDSVT--LNIPSLTLKR  216 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~l~~ll~~cp~Le~L~L~~c~~~~~~~~--l~i~~~~L~~  216 (363)
                      .+...++|+.+.+.....+..+++|.+|.|..++++.=  ++..+   .|+|..|.|.+|+.... ..  --..||+|++
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l-~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQEL-GDLDPLASCPKLEY  117 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhh-hhcchhccCCccce
Confidence            34455666666665555666778888888888877643  44433   57888888888763322 11  1234567777


Q ss_pred             EEEEecCCccccCCceEEEEeccCcceEEEee
Q 017981          217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRD  248 (363)
Q Consensus       217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~  248 (363)
                      |.+-++........-.-+....|+|+.|++.+
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            77777654432112222335567777766654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.97  E-value=2.3e-05  Score=69.52  Aligned_cols=208  Identities=15%  Similarity=0.109  Sum_probs=114.7

Q ss_pred             ccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEee-eEeCCCceeEEEecCCcceEEE
Q 017981          143 LEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKG-YIYGTDSVTLNIPSLTLKRLRL  219 (363)
Q Consensus       143 L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~-c~~~~~~~~l~i~~~~L~~L~l  219 (363)
                      -+.++|..|.+...|  .+..+++|++|+|+++.+..=+ ..-+.+.+.|-+|.+-+ +....+.....-.-.+|+.|.+
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            378888888777543  3558999999999999775432 23367788888888877 4333321111112256666666


Q ss_pred             EecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeee-----------------------ce
Q 017981          220 ELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGI-----------------------EC  273 (363)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~-----------------------~~  273 (363)
                      ..+.....   ......++|+|..|.+.++....+   .+..+..++.+.+...+                       ..
T Consensus       148 Nan~i~Ci---r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  148 NANHINCI---RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             Chhhhcch---hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            66643211   111224556666666666433211   11111111111111000                       00


Q ss_pred             ec---------------cCCC-----------chhhHH--HHHHHhhccCcceEEEEeCCcccccccccc-ccCCCCCCC
Q 017981          274 IL---------------DYDS-----------PEDVAQ--AVVDMLRDIKNIKSLSLSSGTMFALDRLDY-ANDHSFPTF  324 (363)
Q Consensus       274 ~~---------------~~~~-----------~~~~~~--~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~~~~~~~~  324 (363)
                      +.               ..|-           .+...+  .-...++.+++|++|.++++.+   ..+.+ +++    ..
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i---~~i~~~aFe----~~  297 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI---TRIEDGAFE----GA  297 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc---chhhhhhhc----ch
Confidence            00               0000           000011  1445589999999999999877   55554 333    45


Q ss_pred             CCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          325 PFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       325 ~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      ..+++|.+..+.-..  .-..++++..+|++|++..||+
T Consensus       298 a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~i  334 (498)
T KOG4237|consen  298 AELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQI  334 (498)
T ss_pred             hhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCee
Confidence            567777776653211  1223678889999999988874

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.96  E-value=0.001  Score=35.11  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=23.1

Q ss_pred             ccceeeeeeEEEccc-hHHHHhccCC
Q 017981          164 SAKILHVILNTIDNN-FSDWLFSKCP  188 (363)
Q Consensus       164 ~L~~L~L~~~~~~~~-~l~~ll~~cp  188 (363)
                      +||+|+|..+.+.++ .+++++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999888 8999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.50  E-value=0.0015  Score=42.91  Aligned_cols=56  Identities=23%  Similarity=0.262  Sum_probs=43.1

Q ss_pred             CceEEEEEcCCCccccCCccc-ccCCcccEEEecccccccC--CCcccCcccceeeeeeEE
Q 017981          117 NVREIEISLNDDECIELPHCI-YTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNT  174 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~  174 (363)
                      +++.|.+..+..  ..+|... ..+++|++|++++|.+...  ..+.++++|++|++.++.
T Consensus         2 ~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            577888876643  3667544 4599999999999988754  245699999999998864

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.44  E-value=0.001  Score=40.35  Aligned_cols=34  Identities=32%  Similarity=0.421  Sum_probs=15.2

Q ss_pred             cccEEEecccccccCCC-cccCcccceeeeeeEEE
Q 017981          142 TLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTI  175 (363)
Q Consensus       142 ~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~  175 (363)
                      +|++|+++++.+...++ ...+++|+.|+++++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            45555555555543333 44444455555444443

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.34  E-value=9.7e-06  Score=71.99  Aligned_cols=45  Identities=24%  Similarity=0.215  Sum_probs=20.7

Q ss_pred             cCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEc
Q 017981          132 ELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTID  176 (363)
Q Consensus       132 ~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~  176 (363)
                      ++++.++.|..|..|+...+.+...| +...+.+|..|++.+++..
T Consensus       128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~  173 (565)
T KOG0472|consen  128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK  173 (565)
T ss_pred             ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh
Confidence            44444444444444444444444332 2234445555555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.25  E-value=0.0011  Score=63.75  Aligned_cols=175  Identities=16%  Similarity=0.119  Sum_probs=92.9

Q ss_pred             CCcceEEEEecCCCChhhHHHHHH-HHHhCCceEEEEEcCC-CccccCCcccccCCcccEEEecccccccCCC-------
Q 017981           88 GNINKFSLRCCGLVDSSRLKLWVS-FATMRNVREIEISLND-DECIELPHCIYTCKTLEVLKLDMNFFIKTPP-------  158 (363)
Q Consensus        88 ~~l~~l~l~~~~~~~~~~~~~wi~-~~~~~~l~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-------  158 (363)
                      .+++.|+...+...+...+...-. .-+-...+.+.+...+ ..+.. |-.++...+|+.|.|++|.+...-|       
T Consensus        55 ~~~~~f~a~~s~~ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~q  133 (1096)
T KOG1859|consen   55 APVDYFRAYVSDNADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKGLQELRHQ  133 (1096)
T ss_pred             CCCceeEEecCCcccchHHHHHHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhhhHHHHHh
Confidence            567777766554444333332211 1112345555553332 21222 6677788889999988886432100       


Q ss_pred             -------------------------------------------------cccCcccceeeeeeEEEccchHHHHhccCCc
Q 017981          159 -------------------------------------------------TIFFPSAKILHVILNTIDNNFSDWLFSKCPA  189 (363)
Q Consensus       159 -------------------------------------------------~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~  189 (363)
                                                                       ..-+|.|+.|+|+++.+++-+   .+..||.
T Consensus       134 Le~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~  210 (1096)
T KOG1859|consen  134 LEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPK  210 (1096)
T ss_pred             hhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhccc
Confidence                                                             012456677777777665532   3566777


Q ss_pred             cceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc----eeeecCCCceEE
Q 017981          190 LEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL----YVVHELHSLTKA  265 (363)
Q Consensus       190 Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~~  265 (363)
                      |++|+|.+|....+ ..+.....+|..|.+.+|...+-     .=.....+|+.|+++.+....    ..+..+.+|+.+
T Consensus       211 LkhLDlsyN~L~~v-p~l~~~gc~L~~L~lrnN~l~tL-----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L  284 (1096)
T KOG1859|consen  211 LKHLDLSYNCLRHV-PQLSMVGCKLQLLNLRNNALTTL-----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL  284 (1096)
T ss_pred             ccccccccchhccc-cccchhhhhheeeeecccHHHhh-----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence            77777777765555 44444444577777777643221     001234556666666543321    123345556666


Q ss_pred             EEeeeec
Q 017981          266 VVDYGIE  272 (363)
Q Consensus       266 ~l~~~~~  272 (363)
                      .+..++.
T Consensus       285 ~LeGNPl  291 (1096)
T KOG1859|consen  285 WLEGNPL  291 (1096)
T ss_pred             hhcCCcc
Confidence            6655554

>PLN03150 hypothetical protein; Provisional

Probab=96.22  E-value=0.0033  Score=61.90  Aligned_cols=105  Identities=13%  Similarity=0.054  Sum_probs=65.6

Q ss_pred             cccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEE-ecCCcceEE
Q 017981          142 TLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLR  218 (363)
Q Consensus       142 ~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~  218 (363)
                      .++.|+|.++.+...  .....+++|+.|+|.++.+.+. +...+..+++|+.|+|.+|.+.+. ..-.+ ..++|+.|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEE
Confidence            377888888877643  2345788899999998877654 333467888999999988876543 11112 247888998


Q ss_pred             EEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981          219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHG  250 (363)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  250 (363)
                      +.+|........  .+.....++..+.+.++.
T Consensus       497 Ls~N~l~g~iP~--~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        497 LNGNSLSGRVPA--ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcCCcccccCCh--HHhhccccCceEEecCCc
Confidence            888865422000  011112345667777653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.22  E-value=0.0056  Score=52.89  Aligned_cols=154  Identities=12%  Similarity=0.078  Sum_probs=92.5

Q ss_pred             hccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCcccc-----------------CCceEEEEec---cCcce
Q 017981          184 FSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDY-----------------ITKYKVIIRA---PNLEQ  243 (363)
Q Consensus       184 l~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~-----------------~~~~~~~~~~---p~L~~  243 (363)
                      ++.+.+|..+.++.|....+ ..+...-|+|.++.+.+....+..                 .........+   ..|++
T Consensus       210 l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte  288 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE  288 (490)
T ss_pred             hHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence            45678899999999886666 666666689999988876321100                 0001122233   34677


Q ss_pred             EEEeecCCCc--eeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCC
Q 017981          244 LYIRDHGPGL--YVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSF  321 (363)
Q Consensus       244 L~l~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~  321 (363)
                      ++++++....  ....-.|.++.+.++.+.-.             ...-+..+++|..|+++++.+   .-+.-    +-
T Consensus       289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-------------~v~nLa~L~~L~~LDLS~N~L---s~~~G----wh  348 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIR-------------TVQNLAELPQLQLLDLSGNLL---AECVG----WH  348 (490)
T ss_pred             ccccccchhhhhhhhhhccceeEEecccccee-------------eehhhhhcccceEeecccchh---Hhhhh----hH
Confidence            7777765432  22344577777766544422             223377788888888888765   22221    22


Q ss_pred             CCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          322 PTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       322 ~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      -.+.|.+.|.+..+...+..++..    .=+|..|++..||
T Consensus       349 ~KLGNIKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N~  385 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQNKIETLSGLRK----LYSLVNLDLSSNQ  385 (490)
T ss_pred             hhhcCEeeeehhhhhHhhhhhhHh----hhhheeccccccc
Confidence            367788888888775434444333    3457777777765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.14  E-value=0.0015  Score=60.68  Aligned_cols=170  Identities=20%  Similarity=0.197  Sum_probs=103.6

Q ss_pred             ccCCcccEEEecccccccCCCcccCc--ccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcc
Q 017981          138 YTCKTLEVLKLDMNFFIKTPPTIFFP--SAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLK  215 (363)
Q Consensus       138 ~~~~~L~~L~L~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~  215 (363)
                      ...+.++.|.+.++.+...+......  +|+.|++.++.+..-  ..-+..+|+|+.|.+.+|..... .......+.|+
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~  189 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLN  189 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhh-hhhhhhhhhhh
Confidence            33467888888888877655555443  899999998876442  22367789999999999886554 22222567888


Q ss_pred             eEEEEecCCccccCCceEEEEeccC-cceEEEeecCCC--ceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhh
Q 017981          216 RLRLELEAPEEDYITKYKVIIRAPN-LEQLYIRDHGPG--LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLR  292 (363)
Q Consensus       216 ~L~l~~~~~~~~~~~~~~~~~~~p~-L~~L~l~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  292 (363)
                      .|.++++.....     ......++ |++|.++++...  ...+.++..+..+.+.......            ....+.
T Consensus       190 ~L~ls~N~i~~l-----~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~------------~~~~~~  252 (394)
T COG4886         190 NLDLSGNKISDL-----PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED------------LPESIG  252 (394)
T ss_pred             heeccCCccccC-----chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee------------ccchhc
Confidence            888888865321     11112344 888888877321  1223444444444322221100            245677


Q ss_pred             ccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981          293 DIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV  335 (363)
Q Consensus       293 ~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~  335 (363)
                      .+++++.|.++.+.+   ..+.     .+..+.+++.|++.+.
T Consensus       253 ~l~~l~~L~~s~n~i---~~i~-----~~~~~~~l~~L~~s~n  287 (394)
T COG4886         253 NLSNLETLDLSNNQI---SSIS-----SLGSLTNLRELDLSGN  287 (394)
T ss_pred             cccccceeccccccc---cccc-----cccccCccCEEeccCc
Confidence            777888888888766   3322     1335556777777664

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.07  E-value=0.0025  Score=55.57  Aligned_cols=37  Identities=35%  Similarity=0.515  Sum_probs=34.8

Q ss_pred             CcccCCCC----hHHHHHHhcCCChhHhhhhhhhccchhhh
Q 017981            8 EDRISCLP----NAILCHILSFLPTKYAVATCVLSSTWKLV   44 (363)
Q Consensus         8 ~d~i~~LP----d~il~~Ils~L~~~d~~~~~~vskrWr~l   44 (363)
                      .|.|..||    |++-..||+||+..+++.+-.|||+|+.+
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            58899999    99999999999999999999999999853

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=0.00047  Score=58.65  Aligned_cols=81  Identities=21%  Similarity=0.098  Sum_probs=55.5

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEe
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK  196 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~  196 (363)
                      +++.|.++.|.....   ....+++.|..|.|+-|.+.....+..|.+|+.|.|+.+.+.+-+=..-+.+.|+|+.|+|.
T Consensus        20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            566677666654221   13345677888888888877666677788888888888877654223346788888888888


Q ss_pred             eeEe
Q 017981          197 GYIY  200 (363)
Q Consensus       197 ~c~~  200 (363)
                      .|.+
T Consensus        97 ENPC  100 (388)
T KOG2123|consen   97 ENPC  100 (388)
T ss_pred             cCCc
Confidence            8663

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.76  E-value=0.022  Score=52.23  Aligned_cols=131  Identities=18%  Similarity=0.160  Sum_probs=68.2

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEeccccccc-CCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK-TPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      ++++.|+++.|..  ..+|.   --++|++|.+++|.-.. .|+. -.++|++|.+.+|...    ..+   -++|+.|.
T Consensus        52 ~~l~~L~Is~c~L--~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L----~sL---P~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDI--ESLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEI----SGL---PESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCC--cccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccc----ccc---ccccceEE
Confidence            6788888876642  33441   12468888888764321 2321 2357888888877321    111   25677777


Q ss_pred             EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEE-EEeccCcceEEEeecCCCceeeecC-CCceEEEEe
Q 017981          195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKV-IIRAPNLEQLYIRDHGPGLYVVHEL-HSLTKAVVD  268 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~-~~L~~~~l~  268 (363)
                      +..+..    ..+..-.++|++|.+.++.....    ... ..-.++|++|.+++|...... ..+ ++|+.+.++
T Consensus       119 L~~n~~----~~L~~LPssLk~L~I~~~n~~~~----~~lp~~LPsSLk~L~Is~c~~i~LP-~~LP~SLk~L~ls  185 (426)
T PRK15386        119 IKGSAT----DSIKNVPNGLTSLSINSYNPENQ----ARIDNLISPSLKTLSLTGCSNIILP-EKLPESLQSITLH  185 (426)
T ss_pred             eCCCCC----cccccCcchHhheeccccccccc----cccccccCCcccEEEecCCCcccCc-ccccccCcEEEec
Confidence            754321    12222335788887754321100    000 112357888888876543211 222 356666654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=0.0096  Score=48.49  Aligned_cols=70  Identities=24%  Similarity=0.259  Sum_probs=49.7

Q ss_pred             HHHHHHHhhccCcceEEEEeCCcccccccccc-ccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEe
Q 017981          284 AQAVVDMLRDIKNIKSLSLSSGTMFALDRLDY-ANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFE  359 (363)
Q Consensus       284 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~  359 (363)
                      .......+..++.++.|.+..+.     .+.+ +++..-+.+++|+.|++++|+.++..++..+ ...++|+.|.|.
T Consensus       114 ~~eGle~L~~l~~i~~l~l~~ck-----~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~  184 (221)
T KOG3864|consen  114 MYEGLEHLRDLRSIKSLSLANCK-----YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLY  184 (221)
T ss_pred             HHHHHHHHhccchhhhheecccc-----chhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhc
Confidence            34467778888888888888773     3444 3332334677899999999988888888765 457788877664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.39  E-value=0.0058  Score=36.97  Aligned_cols=38  Identities=21%  Similarity=0.183  Sum_probs=28.9

Q ss_pred             cccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCC
Q 017981          163 PSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGT  202 (363)
Q Consensus       163 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~  202 (363)
                      ++|++|+|.++.+++  +...+..||+|+.|++.+|.+.+
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence            578999999998864  55557899999999999987543

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.31  E-value=0.00084  Score=62.82  Aligned_cols=105  Identities=20%  Similarity=0.160  Sum_probs=62.1

Q ss_pred             cccCCcccEEEecccccccCCC-cccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCc
Q 017981          137 IYTCKTLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTL  214 (363)
Q Consensus       137 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L  214 (363)
                      +..+++|..|.+..+.+..... ...+++|+.|+|+++.+++- ++.    .++.|+.|.+.+|..... ..+.. .+.|
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~-~~~~~-l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDI-SGLES-LKSL  164 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhc-cCCcc-chhh
Confidence            4456777788888777775555 56677888888888877654 433    345577888877764433 11111 4667


Q ss_pred             ceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981          215 KRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG  250 (363)
Q Consensus       215 ~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  250 (363)
                      +.+++.++........  . .....+|+.+.+.++.
T Consensus       165 ~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIEND--E-LSELISLEELDLGGNS  197 (414)
T ss_pred             hcccCCcchhhhhhhh--h-hhhccchHHHhccCCc
Confidence            7777777654322000  0 2344566666666553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.28  E-value=0.021  Score=48.73  Aligned_cols=61  Identities=11%  Similarity=0.118  Sum_probs=31.6

Q ss_pred             CCcccEEEecccccccCC------CcccCcccceeeeeeEE---Eccc------hHHHHhccCCccceEEEeeeEe
Q 017981          140 CKTLEVLKLDMNFFIKTP------PTIFFPSAKILHVILNT---IDNN------FSDWLFSKCPALEDLSIKGYIY  200 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~---~~~~------~l~~ll~~cp~Le~L~L~~c~~  200 (363)
                      ...++.++|++|.+.+..      ..++-.+|+.-++++.-   ..++      .+...+.+||.|+...|++|.+
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            566777778877766421      11233344444444331   1111      2223455777777777777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.18  E-value=0.0031  Score=58.59  Aligned_cols=188  Identities=16%  Similarity=0.158  Sum_probs=116.9

Q ss_pred             EEEeccccc-ccCCCcccCcccceeeeeeEEEccchHHHHhccC-CccceEEEeeeEeCCCceeEEEecCCcceEEEEec
Q 017981          145 VLKLDMNFF-IKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKC-PALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELE  222 (363)
Q Consensus       145 ~L~L~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~c-p~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~  222 (363)
                      .+.+..+.. ........++.++.|.+.++.+++-  ....... ++|++|.+.++....+ ..---..+.|+.|.+.+|
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i--~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDI--PPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccC--ccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence            567776666 3223344668899999999987653  3333334 4899999999875433 111223589999999999


Q ss_pred             CCccccCCceEEEEeccCcceEEEeecCCCceeee--cCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEE
Q 017981          223 APEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVH--ELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSL  300 (363)
Q Consensus       223 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~--~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L  300 (363)
                      .....    .......++|+.|.++++....+.-.  ....|+.+.+......            .....+..+.++..|
T Consensus       174 ~l~~l----~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l  237 (394)
T COG4886         174 DLSDL----PKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII------------ELLSSLSNLKNLSGL  237 (394)
T ss_pred             hhhhh----hhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce------------ecchhhhhccccccc
Confidence            76432    11112789999999999877655433  3333777766544211            134445566666666


Q ss_pred             EEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          301 SLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       301 ~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      .+.....   ..+..    .+..+.+++.|++..+...+...    +....+|+.|+++.+.
T Consensus       238 ~l~~n~~---~~~~~----~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~  288 (394)
T COG4886         238 ELSNNKL---EDLPE----SIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNS  288 (394)
T ss_pred             ccCCcee---eeccc----hhccccccceecccccccccccc----ccccCccCEEeccCcc
Confidence            6555544   22111    34456668888888876533333    6677888888887653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.12  E-value=0.019  Score=58.52  Aligned_cols=105  Identities=15%  Similarity=0.072  Sum_probs=50.4

Q ss_pred             CCcccEEEecccc--cccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-cCCc
Q 017981          140 CKTLEVLKLDMNF--FIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTL  214 (363)
Q Consensus       140 ~~~L~~L~L~~~~--~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L  214 (363)
                      |+.|++|-+.++.  +...+.  +..+|.|+.|+|++|.-.. .+-.-++..-+|++|.+.++....+  ...+. -..|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~~L--P~~l~~Lk~L  620 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGISHL--PSGLGNLKKL  620 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcccc--chHHHHHHhh
Confidence            4556666666553  222222  3456666666666543211 2333355556666666665443221  00111 1356


Q ss_pred             ceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981          215 KRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG  250 (363)
Q Consensus       215 ~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  250 (363)
                      ..|++........   ...+...+++|++|.+....
T Consensus       621 ~~Lnl~~~~~l~~---~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTGRLES---IPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heecccccccccc---ccchhhhcccccEEEeeccc
Confidence            6666665543211   12233346778888777653

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=95.03  E-value=0.014  Score=52.72  Aligned_cols=38  Identities=18%  Similarity=0.186  Sum_probs=33.7

Q ss_pred             ccCCCChHHHHHHhcCCC-hhHhhhhhhhccchhhhhcc
Q 017981           10 RISCLPNAILCHILSFLP-TKYAVATCVLSSTWKLVWTS   47 (363)
Q Consensus        10 ~i~~LPd~il~~Ils~L~-~~d~~~~~~vskrWr~l~~~   47 (363)
                      .+++||+|+|..|..+|+ .-|++|.+.||+.||.....
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            378999999999999995 68999999999999986544

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.02  E-value=0.013  Score=50.70  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=30.2

Q ss_pred             cccCCCChHHHHHHhcC-----CChhHhhhhhhhccchhh
Q 017981            9 DRISCLPNAILCHILSF-----LPTKYAVATCVLSSTWKL   43 (363)
Q Consensus         9 d~i~~LPd~il~~Ils~-----L~~~d~~~~~~vskrWr~   43 (363)
                      +.|+.||||||..||..     |+.+++.+++.|||.|+.
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            45789999999999875     457999999999999985

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.92  E-value=0.036  Score=45.29  Aligned_cols=102  Identities=20%  Similarity=0.158  Sum_probs=70.2

Q ss_pred             CcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCc
Q 017981          162 FPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNL  241 (363)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L  241 (363)
                      ..+...++|.++.+...   ..+...+.|..|.+.+|....+...+.-..|.|++|.+.+|+....  +...-...||+|
T Consensus        41 ~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l--~dl~pLa~~p~L  115 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL--GDLDPLASCPKL  115 (233)
T ss_pred             ccccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh--hhcchhccCCcc
Confidence            34556778887765433   2267788999999999875444234444458999999999976432  112233678999


Q ss_pred             ceEEEeecCCC------ceeeecCCCceEEEEe
Q 017981          242 EQLYIRDHGPG------LYVVHELHSLTKAVVD  268 (363)
Q Consensus       242 ~~L~l~~~~~~------~~~~~~~~~L~~~~l~  268 (363)
                      ++|.+-|+...      -+.+..+|+|+.++..
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence            99999997653      3567788888877653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.18  E-value=0.004  Score=53.17  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=45.3

Q ss_pred             CcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHh
Q 017981          213 TLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDML  291 (363)
Q Consensus       213 ~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  291 (363)
                      +.|+|+.++|...     +..+...+|.||.|.++=+.+.+. .+..|..|+++++.-+.-.          .-.-...+
T Consensus        20 ~vkKLNcwg~~L~-----DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~----------sldEL~YL   84 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-----DISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE----------SLDELEYL   84 (388)
T ss_pred             HhhhhcccCCCcc-----HHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc----------cHHHHHHH
Confidence            5677888887653     235667788888888886654432 3555666666655422110          00135556


Q ss_pred             hccCcceEEEEeCC
Q 017981          292 RDIKNIKSLSLSSG  305 (363)
Q Consensus       292 ~~l~~l~~L~l~~~  305 (363)
                      +++++|+.|.|..+
T Consensus        85 knlpsLr~LWL~EN   98 (388)
T KOG2123|consen   85 KNLPSLRTLWLDEN   98 (388)
T ss_pred             hcCchhhhHhhccC
Confidence            66666666666443

>PLN03150 hypothetical protein; Provisional

Probab=93.10  E-value=0.094  Score=51.81  Aligned_cols=104  Identities=14%  Similarity=0.127  Sum_probs=73.3

Q ss_pred             ceEEEEEcCCCccccCCcccccCCcccEEEecccccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          118 VREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       118 l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      ++.|.|..+.. ...+|..+..+++|+.|+|++|.+.+. | ....+++|+.|+|+++.+.+. +...+..+++|++|.|
T Consensus       420 v~~L~L~~n~L-~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGL-RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCc-cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence            55666654443 346788888899999999999988743 3 466899999999999988765 3344778999999999


Q ss_pred             eeeEeCCC-ceeEEEecCCcceEEEEecC
Q 017981          196 KGYIYGTD-SVTLNIPSLTLKRLRLELEA  223 (363)
Q Consensus       196 ~~c~~~~~-~~~l~i~~~~L~~L~l~~~~  223 (363)
                      .+|.+.+. ...+.-...++..+.+.+|.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCc
Confidence            99875442 01111112345667777663

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.95  E-value=0.094  Score=53.58  Aligned_cols=153  Identities=16%  Similarity=0.108  Sum_probs=90.0

Q ss_pred             cCCcccEEEecccccccCCCcccCcccceeeeeeEEE-ccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-cCCcce
Q 017981          139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTI-DNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKR  216 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~  216 (363)
                      .....+..++-++.+...++...+|+|++|-+..+.. ....-..++...|.|..|+|.+|.-.+. -.-.|. --+|+.
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRY  599 (889)
T ss_pred             chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhc
Confidence            3467788888877776567777888999999999863 2222345577889999999998762221 011122 257888


Q ss_pred             EEEEecCCccccCCceEEEEeccCcceEEEeecCCCc---eeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc
Q 017981          217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL---YVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD  293 (363)
Q Consensus       217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  293 (363)
                      |++.+......    ..-......|.+|++.......   -....+++|+.+.+-....         ........-+..
T Consensus       600 L~L~~t~I~~L----P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~---------~~~~~~l~el~~  666 (889)
T KOG4658|consen  600 LDLSDTGISHL----PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL---------SNDKLLLKELEN  666 (889)
T ss_pred             ccccCCCcccc----chHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc---------ccchhhHHhhhc
Confidence            88888754311    1111223456666666543221   1223477788777654431         111224444577


Q ss_pred             cCcceEEEEeCC
Q 017981          294 IKNIKSLSLSSG  305 (363)
Q Consensus       294 l~~l~~L~l~~~  305 (363)
                      +.+|+.|++...
T Consensus       667 Le~L~~ls~~~~  678 (889)
T KOG4658|consen  667 LEHLENLSITIS  678 (889)
T ss_pred             ccchhhheeecc
Confidence            777777777554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=92.57  E-value=0.096  Score=27.46  Aligned_cols=25  Identities=20%  Similarity=0.217  Sum_probs=21.3

Q ss_pred             CCCcceEEEEeccCCChHHHHHHHH
Q 017981          324 FPFLNRLEVEGVGACGWLSLAHIFS  348 (363)
Q Consensus       324 ~~~L~~L~l~~~~~~~~~~l~~ll~  348 (363)
                      +++|++|++..|..+++.++..+.+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            3579999999999999999988754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.83  E-value=0.058  Score=45.79  Aligned_cols=43  Identities=21%  Similarity=0.306  Sum_probs=27.2

Q ss_pred             CCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          320 SFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       320 ~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      .+|.+++|+.|.++.+...-..++..++.+||+|++|.+++|+
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence            4666667777777665332334566666677777777777665

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=91.79  E-value=0.083  Score=50.84  Aligned_cols=39  Identities=31%  Similarity=0.505  Sum_probs=36.1

Q ss_pred             CCCcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhh
Q 017981            6 STEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLV   44 (363)
Q Consensus         6 ~~~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l   44 (363)
                      ...|.++.||-|+..+|+++|+.++++++++||+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            457899999999999999999999999999999999854

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.35  E-value=0.096  Score=49.08  Aligned_cols=101  Identities=16%  Similarity=0.055  Sum_probs=67.2

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccc-hHHHHhccCCccceEEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSI  195 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L  195 (363)
                      +++.+.+.....  ..+...+..+++|++|+|+++.+....+...++.|+.|++.++.+.+- +    +..++.|+.+.+
T Consensus        96 ~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~----~~~l~~L~~l~l  169 (414)
T KOG0531|consen   96 SLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG----LESLKSLKLLDL  169 (414)
T ss_pred             ceeeeeccccch--hhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC----CccchhhhcccC
Confidence            455555543321  122222556888999999998888777777788889999998887655 4    233788888888


Q ss_pred             eeeEeCCCceeE-EEecCCcceEEEEecCC
Q 017981          196 KGYIYGTDSVTL-NIPSLTLKRLRLELEAP  224 (363)
Q Consensus       196 ~~c~~~~~~~~l-~i~~~~L~~L~l~~~~~  224 (363)
                      .+|..... ... .....+++.+.+.++..
T Consensus       170 ~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  170 SYNRIVDI-ENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             Ccchhhhh-hhhhhhhccchHHHhccCCch
Confidence            88775444 221 12347788888888754

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=88.85  E-value=0.49  Score=24.82  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=20.4

Q ss_pred             CcceEEEEeccCCChHHHHHHHHhCC
Q 017981          326 FLNRLEVEGVGACGWLSLAHIFSRMP  351 (363)
Q Consensus       326 ~L~~L~l~~~~~~~~~~l~~ll~~~p  351 (363)
                      .||+|.+......+...+..++.+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            37888888766556678999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.43  E-value=0.16  Score=25.96  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=11.6

Q ss_pred             CcccceeeeeeEEEccchHHHH
Q 017981          162 FPSAKILHVILNTIDNNFSDWL  183 (363)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~l~~l  183 (363)
                      +++|++|+|+++.++++++..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3566667777666666654443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=88.35  E-value=1.5  Score=40.58  Aligned_cols=115  Identities=22%  Similarity=0.133  Sum_probs=65.2

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEeccc-ccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMN-FFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      .++++|.+..|.. -..+|..+  .++|++|.+.+| .+...|     ++|++|.+.+....  .+.   .--++|++|.
T Consensus        72 ~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~~~--~L~---~LPssLk~L~  138 (426)
T PRK15386         72 NELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLEIKGSATD--SIK---NVPNGLTSLS  138 (426)
T ss_pred             CCCcEEEccCCCC-cccCCchh--hhhhhheEccCcccccccc-----cccceEEeCCCCCc--ccc---cCcchHhhee
Confidence            4799999976553 22344322  368999999988 443222     46888887643221  122   2236788888


Q ss_pred             EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec
Q 017981          195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH  249 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  249 (363)
                      +..+........-..-.++|+.|.+.+|.....      ...-.++|++|.++.+
T Consensus       139 I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~L------P~~LP~SLk~L~ls~n  187 (426)
T PRK15386        139 INSYNPENQARIDNLISPSLKTLSLTGCSNIIL------PEKLPESLQSITLHIE  187 (426)
T ss_pred             ccccccccccccccccCCcccEEEecCCCcccC------cccccccCcEEEeccc
Confidence            855331111001112237899999998864311      0011257888888754

>PF13013 F-box-like_2: F-box-like domain

Probab=86.68  E-value=0.43  Score=35.14  Aligned_cols=30  Identities=17%  Similarity=0.159  Sum_probs=26.6

Q ss_pred             ccCCCChHHHHHHhcCCChhHhhhhhhhcc
Q 017981           10 RISCLPNAILCHILSFLPTKYAVATCVLSS   39 (363)
Q Consensus        10 ~i~~LPd~il~~Ils~L~~~d~~~~~~vsk   39 (363)
                      .+.+||+||+..|+.+-+..+...+...|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            378999999999999999999888877776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=86.06  E-value=0.046  Score=53.14  Aligned_cols=82  Identities=18%  Similarity=0.105  Sum_probs=41.2

Q ss_pred             ccccCCcccEEEecccccccCCCc--ccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEec-
Q 017981          136 CIYTCKTLEVLKLDMNFFIKTPPT--IFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPS-  211 (363)
Q Consensus       136 ~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~-  211 (363)
                      .+..|++|++|+|++|.+...|.+  .+|. |..|.|+++.++.- ++    .+..+|+.|++.+|-..+.++..-.-+ 
T Consensus       204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gi----e~LksL~~LDlsyNll~~hseL~pLwsL  278 (1096)
T KOG1859|consen  204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGI----ENLKSLYGLDLSYNLLSEHSELEPLWSL  278 (1096)
T ss_pred             HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhH----HhhhhhhccchhHhhhhcchhhhHHHHH
Confidence            334466666666666665544332  2444 66666666654433 32    234666666666654333311111111 


Q ss_pred             CCcceEEEEec
Q 017981          212 LTLKRLRLELE  222 (363)
Q Consensus       212 ~~L~~L~l~~~  222 (363)
                      ..|+.|.+.+|
T Consensus       279 s~L~~L~LeGN  289 (1096)
T KOG1859|consen  279 SSLIVLWLEGN  289 (1096)
T ss_pred             HHHHHHhhcCC
Confidence            45666666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=84.76  E-value=0.038  Score=52.09  Aligned_cols=164  Identities=19%  Similarity=0.124  Sum_probs=71.3

Q ss_pred             cEEEecccccccCCC-cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEec
Q 017981          144 EVLKLDMNFFIKTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELE  222 (363)
Q Consensus       144 ~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~  222 (363)
                      +..+|+.+++...|. +..|-.|..|.|..+++-.-  -.-+.....|..|+|..+.....  ...+----|+.|.+.++
T Consensus        78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~i--p~~i~~L~~lt~l~ls~NqlS~l--p~~lC~lpLkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTI--PEAICNLEALTFLDLSSNQLSHL--PDGLCDLPLKVLIVSNN  153 (722)
T ss_pred             hhhhccccccccCchHHHHHHHHHHHHHHhccceec--chhhhhhhHHHHhhhccchhhcC--ChhhhcCcceeEEEecC
Confidence            444555555544332 23455555555555543221  11122334455555555442221  11111123555555555


Q ss_pred             CCccccCCceEEEEeccCcceEEEeecCCCce--eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc--cCcce
Q 017981          223 APEEDYITKYKVIIRAPNLEQLYIRDHGPGLY--VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD--IKNIK  298 (363)
Q Consensus       223 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~l~  298 (363)
                      ....-   ...+. ..+.|..|+.+.+.....  .++.+.+|+.+.+.-+.               +..+...  .-.|.
T Consensus       154 kl~~l---p~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~---------------l~~lp~El~~LpLi  214 (722)
T KOG0532|consen  154 KLTSL---PEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH---------------LEDLPEELCSLPLI  214 (722)
T ss_pred             ccccC---Ccccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh---------------hhhCCHHHhCCcee
Confidence            43321   11222 456666666666544322  13333444444332111               1112111  22456


Q ss_pred             EEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981          299 SLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA  337 (363)
Q Consensus       299 ~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  337 (363)
                      .|+++.+.+   .++-.    .+..+.+|+.|.+..++-
T Consensus       215 ~lDfScNki---s~iPv----~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  215 RLDFSCNKI---SYLPV----DFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             eeecccCce---eecch----hhhhhhhheeeeeccCCC
Confidence            677777655   33222    223566677777777653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=81.75  E-value=0.06  Score=50.81  Aligned_cols=86  Identities=17%  Similarity=0.108  Sum_probs=33.7

Q ss_pred             CCcccccCCcccEEEecccccccC-CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEec
Q 017981          133 LPHCIYTCKTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPS  211 (363)
Q Consensus       133 l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~  211 (363)
                      +|..+..|..|..+.|.-+.+... ....++..|+.|+|+.+....-  -.-+..|| |+.|.+.++....+...++ ..
T Consensus        90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~l--p~~lC~lp-Lkvli~sNNkl~~lp~~ig-~~  165 (722)
T KOG0532|consen   90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHL--PDGLCDLP-LKVLIVSNNKLTSLPEEIG-LL  165 (722)
T ss_pred             CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcC--ChhhhcCc-ceeEEEecCccccCCcccc-cc
Confidence            333333344444444443333221 2223444445555554443221  11123334 5555555544333222223 23


Q ss_pred             CCcceEEEEec
Q 017981          212 LTLKRLRLELE  222 (363)
Q Consensus       212 ~~L~~L~l~~~  222 (363)
                      ++|..|+.+.|
T Consensus       166 ~tl~~ld~s~n  176 (722)
T KOG0532|consen  166 PTLAHLDVSKN  176 (722)
T ss_pred             hhHHHhhhhhh
Confidence            44444444444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=80.75  E-value=0.98  Score=20.91  Aligned_cols=13  Identities=31%  Similarity=0.353  Sum_probs=5.8

Q ss_pred             cccEEEecccccc
Q 017981          142 TLEVLKLDMNFFI  154 (363)
Q Consensus       142 ~L~~L~L~~~~~~  154 (363)
                      +|+.|+|++|.+.
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666665543

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 4e-12
 Identities = 66/399 (16%), Positives = 128/399 (32%), Gaps = 132/399 (33%)

Query: 45  WTSLPNLCFDDRLCLEFQRNL------------DLSTVASTRFENFVHRV---------- 82
           W +L N C      LE  + L            D S+    R  +    +          
Sbjct: 186 WLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 83  --LL-----SASGNINKFSLRCCGLV---DSSRLKLWVSFATMRNVREIEIS--LNDDEC 130
             LL       +   N F+L C  L+       +  ++S AT  ++     S  L  DE 
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDE- 302

Query: 131 IELPHCIYTCKTLEVL--KLDMNFF------IKTPP---TIFFPSAKILHVILNTIDNNF 179
                         +L   LD          + T P   +I    A+ +   L T DN  
Sbjct: 303 -----------VKSLLLKYLDCRPQDLPREVLTTNPRRLSII---AESIRDGLATWDN-- 346

Query: 180 SDWLFSKCPALE---DLSIKG---------Y----IYGTDSVTLNIPSLTLKRLRLELEA 223
             W    C  L    + S+           +    ++   +   +IP++ L  +  ++  
Sbjct: 347 --WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIWFDVIK 401

Query: 224 PEEDYIT----KYKVIIRAPNLEQLYIRDHGPGLYV--------VHELHSLTKAVVD-YG 270
            +   +     KY ++ + P    + I    P +Y+         + LH   +++VD Y 
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISI----PSIYLELKVKLENEYALH---RSIVDHYN 454

Query: 271 IECILDYDSPEDVAQAVVDM---------LRDIKNIKSLSLSSGTMFALDRLDYANDHSF 321
           I    D D   D+    +D          L++I++ +           L R+ + +    
Sbjct: 455 IPKTFDSD---DLIPPYLDQYFYSHIGHHLKNIEHPE--------RMTLFRMVFLD---- 499

Query: 322 PTFPFL-NRLEVEGVGACGWLSLAHIFSRMPKLESIVFE 359
             F FL  ++  +        S+ +   ++   +  + +
Sbjct: 500 --FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 33/271 (12%), Positives = 80/271 (29%), Gaps = 40/271 (14%)

Query: 8   EDRISCLPNAILCHILSFLPTKYAVATC---------VLSSTWKLVWTSLPNLCFDDRLC 58
           +      P  +L H+ SF+       +          +     + V+           + 
Sbjct: 3   KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVI 62

Query: 59  LEFQ--RNLDLS-----------TVASTRFENFVHRVLLSASGNINKFSLRCCGLVDSSR 105
             F   R+++L                  +       + S+   + +  L+   + D   
Sbjct: 63  RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL 122

Query: 106 LKLWVSFATMRNVREIEIS----LNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIF 161
             +  SF   +N + + +S     + D    +      C+ L+ L L  +          
Sbjct: 123 ELIAKSF---KNFKVLVLSSCEGFSTDGLAAIAAT---CRNLKELDLRESDVDDVSGHWL 176

Query: 162 FPSAK----ILHVILNTIDNNFSDW----LFSKCPALEDLSIKGYIYGTDSVTLNIPSLT 213
                    ++ + ++ + +  S      L ++CP L+ L +   +      TL   +  
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ 236

Query: 214 LKRLRLELEAPEEDYITKYKVIIRAPNLEQL 244
           L+ L       E        + +     ++L
Sbjct: 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 33/276 (11%), Positives = 84/276 (30%), Gaps = 41/276 (14%)

Query: 11  ISCLPNAILCHILSFLPTKYAVATC---------VLSSTWKLVWTSLPNLCFDDRLCLEF 61
                + ++  +++++       +          + S T + V  +L      DRL   F
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72

Query: 62  Q--RNLDLSTVASTRFENFVH-----------RVLLSASGNINKFSLRCCGLVDSSRLKL 108
              R+L L         N +              + +    +     R   + D    +L
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 109 WVSFATMRNVREIEIS----LNDDECIELPHCIYTCKTLEVLKLDMNFFI-KTPPTIF-- 161
             +     ++  +++        D  + +      C+ ++ L ++ + F  K    +   
Sbjct: 133 AKAR--ADDLETLKLDKCSGFTTDGLLSIVTH---CRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 162 ---FPSAKILHVIL---NTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLK 215
                S ++L+  +     I     + +   C +L  + +  +      V     +  L+
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGFFKAAANLE 246

Query: 216 RLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251
                    +     KY  ++    L +L +   GP
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.45
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.34
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.3
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.29
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.2
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.03
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.03
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.02
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.02
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.02
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.02
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.01
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.0
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.0
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.0
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.99
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.99
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.99
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.99
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.98
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.97
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.97
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.97
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.95
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.95
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.9
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.85
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.84
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.79
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.66
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.6
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.59
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.57
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.56
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.52
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.42
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.33
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.31
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.28
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.26
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.26
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.25
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.22
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.22
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.21
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.2
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.16
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.1
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.03
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.01
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.92
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.88
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.85
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.85
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.8
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.79
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.73
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.4
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.3
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.28
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.15
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.81
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.1
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.37
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.65
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	87.83

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=5.6e-24  Score=206.46  Aligned_cols=333  Identities=11%  Similarity=0.057  Sum_probs=160.9

Q ss_pred             CCCcccC----CCChHHHHHHhcCC-ChhHhhhhhhhccchhhhhccCcceEEecCc-chhhh----------ccccc--
Q 017981            6 STEDRIS----CLPNAILCHILSFL-PTKYAVATCVLSSTWKLVWTSLPNLCFDDRL-CLEFQ----------RNLDL--   67 (363)
Q Consensus         6 ~~~d~i~----~LPd~il~~Ils~L-~~~d~~~~~~vskrWr~l~~~~~~l~~~~~~-~~~~~----------~~~~~--   67 (363)
                      ++.|+++    +||||+|.+||+|| +.+|+++++.|||||++++.... ..+.... +....          +...-  
T Consensus         4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~   82 (592)
T 3ogk_B            4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETR-EHVTMALCYTATPDRLSRRFPNLRSLKLKG   82 (592)
T ss_dssp             --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHC-CEEEESCGGGSCHHHHHHHCTTCSEEEEEC
T ss_pred             hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccc-cEEEEeeccccChHHHHHhCCCCeEEEecC
Confidence            3456776    89999999999999 89999999999999998753322 1221111 00000          00000  


Q ss_pred             ---------chhhhhHH-HHHHHHHHhcCCCCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCC-ccccCCcc
Q 017981           68 ---------STVASTRF-ENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDD-ECIELPHC  136 (363)
Q Consensus        68 ---------~~~~~~~~-~~~i~~~l~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~-~~~~l~~~  136 (363)
                               .......+ ...+..+.. .-+.++.+.+.... . ......|+......++++|++..+.. ....++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~L~~L~L~~~~-i-~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~  159 (592)
T 3ogk_B           83 KPRAAMFNLIPENWGGYVTPWVTEISN-NLRQLKSVHFRRMI-V-SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI  159 (592)
T ss_dssp             SCGGGGGTCSCTTSCCBCHHHHHHHHH-HCTTCCEEEEESCB-C-CHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHH
T ss_pred             CcchhhcccccccccccchHHHHHHHh-hCCCCCeEEeeccE-e-cHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHH
Confidence                     00000000 000111110 11234444444321 1 11122233332223466666654431 11123333


Q ss_pred             cccCCcccEEEecccccccCC------CcccCcccceeeeeeEEEc---cchHHHHhccCCccceEEEeeeEeCCCceeE
Q 017981          137 IYTCKTLEVLKLDMNFFIKTP------PTIFFPSAKILHVILNTID---NNFSDWLFSKCPALEDLSIKGYIYGTDSVTL  207 (363)
Q Consensus       137 ~~~~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l  207 (363)
                      ...|++|++|+|++|.+.+..      ....+++|++|+|.++.++   ...+..++.+||+|++|.+.+|...+. ...
T Consensus       160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l-~~~  238 (592)
T 3ogk_B          160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGF  238 (592)
T ss_dssp             HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG-HHH
T ss_pred             HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH-HHH
Confidence            335666777777666554221      1125666777777666654   235566666777777777777654332 111


Q ss_pred             EEecCCcceEEEEecCCccc-----------------------cCCceEEEEeccCcceEEEeecCCCce----eeecCC
Q 017981          208 NIPSLTLKRLRLELEAPEED-----------------------YITKYKVIIRAPNLEQLYIRDHGPGLY----VVHELH  260 (363)
Q Consensus       208 ~i~~~~L~~L~l~~~~~~~~-----------------------~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~~  260 (363)
                      -...++|+.|.+..+.....                       ......+...+++|++|+++++.....    .+..++
T Consensus       239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence            11224455555443211000                       000111112356777777776653321    135667


Q ss_pred             CceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeC----------CccccccccccccCCCCCCCCCcceE
Q 017981          261 SLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSS----------GTMFALDRLDYANDHSFPTFPFLNRL  330 (363)
Q Consensus       261 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~----------~~~~~~~~l~~~~~~~~~~~~~L~~L  330 (363)
                      +|+.+.+....           ....+..++..+++|+.|.++.          +...+.+.+..    ....+++|++|
T Consensus       319 ~L~~L~L~~~~-----------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~----l~~~~~~L~~L  383 (592)
T 3ogk_B          319 NLEVLETRNVI-----------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA----LAQGCQELEYM  383 (592)
T ss_dssp             TCCEEEEEGGG-----------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH----HHHHCTTCSEE
T ss_pred             CCCEEeccCcc-----------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH----HHhhCccCeEE
Confidence            77777665111           1122555667778888888873          22211111111    11135678888


Q ss_pred             EEEeccCCChHHHHHHHHhCCCCcceEEe
Q 017981          331 EVEGVGACGWLSLAHIFSRMPKLESIVFE  359 (363)
Q Consensus       331 ~l~~~~~~~~~~l~~ll~~~p~L~~L~l~  359 (363)
                      ++ .+...+..++..+.++||+|++|++.
T Consensus       384 ~l-~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          384 AV-YVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             EE-EESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             Ee-ecCCccHHHHHHHHhhCCCCcEEEEe
Confidence            88 44445777777777778888888875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=2.3e-23  Score=202.19  Aligned_cols=38  Identities=18%  Similarity=0.437  Sum_probs=29.3

Q ss_pred             CCcccCCCChHHHHHHhcCCC-hhHhhhhhhhccchhhh
Q 017981            7 TEDRISCLPNAILCHILSFLP-TKYAVATCVLSSTWKLV   44 (363)
Q Consensus         7 ~~d~i~~LPd~il~~Ils~L~-~~d~~~~~~vskrWr~l   44 (363)
                      +.|+|+.||||||.+||+||| .+|+++++.|||||+++
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            358999999999999999999 99999999999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=5.6e-24  Score=191.91  Aligned_cols=283  Identities=13%  Similarity=0.069  Sum_probs=185.3

Q ss_pred             CCcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhcc---CcceEEecCcchhhhcccccchhhhhHHHHHHHHHH
Q 017981            7 TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTS---LPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVL   83 (363)
Q Consensus         7 ~~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l   83 (363)
                      +...|++||||++.+||+||+.+|+++++.|||+|+++...   +..+++.....                         
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~-------------------------   59 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL-------------------------   59 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC-------------------------
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC-------------------------
Confidence            34578999999999999999999999999999999987532   11222221110                         


Q ss_pred             hcCCCCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC---CCcc
Q 017981           84 LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT---PPTI  160 (363)
Q Consensus        84 ~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~---~~~~  160 (363)
                                        .    +..+.....++++.+.+..+..  ...+..++.+++|++|+|++|.+...   ....
T Consensus        60 ------------------~----~~~~~~~~~~~l~~L~l~~n~l--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~  115 (336)
T 2ast_B           60 ------------------H----PDVTGRLLSQGVIAFRCPRSFM--DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS  115 (336)
T ss_dssp             ------------------C----HHHHHHHHHTTCSEEECTTCEE--CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred             ------------------C----HHHHHhhhhccceEEEcCCccc--cccchhhccCCCCCEEEccCCCcCHHHHHHHHh
Confidence                              1    1123333446778777754332  22334467899999999999987532   2345


Q ss_pred             cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE-eCC--CceeEEEecCCcceEEEEec-CCccccCCceEEEE
Q 017981          161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI-YGT--DSVTLNIPSLTLKRLRLELE-APEEDYITKYKVII  236 (363)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~-~~~--~~~~l~i~~~~L~~L~l~~~-~~~~~~~~~~~~~~  236 (363)
                      .+++|++|+|.++.+++.... .+..|++|++|.+.+|. +.+  . ......+++|++|++.+| .....  .......
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~  191 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFAL-QTLLSSCSRLDELNLSWCFDFTEK--HVQVAVA  191 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHH-HHHHHHCTTCCEEECCCCTTCCHH--HHHHHHH
T ss_pred             hCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHH-HHHHhcCCCCCEEcCCCCCCcChH--HHHHHHH
Confidence            789999999999987665433 45679999999999984 332  1 111223589999999998 54321  1122235


Q ss_pred             ecc-CcceEEEeecC--CC----ceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccc
Q 017981          237 RAP-NLEQLYIRDHG--PG----LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFA  309 (363)
Q Consensus       237 ~~p-~L~~L~l~~~~--~~----~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~  309 (363)
                      .+| +|++|+++++.  ..    ...+.++++|+.+++..+...          .+.....+..+++|+.|.++++...+
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l----------~~~~~~~l~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML----------KNDCFQEFFQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC----------CGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC----------CHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence            578 99999999873  32    123467889998888655411          01123356778999999998874322


Q ss_pred             ccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          310 LDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       310 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      .+.    .. .+..+++|+.|++.++  .+..++..+.+++|+|+   ++.++
T Consensus       262 ~~~----~~-~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~---l~~n~  304 (336)
T 2ast_B          262 PET----LL-ELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---INCSH  304 (336)
T ss_dssp             GGG----GG-GGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---ESCCC
T ss_pred             HHH----HH-HHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceE---Eeccc
Confidence            121    11 2345778999999888  56666777777677665   55443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.45  E-value=2.9e-14  Score=127.78  Aligned_cols=220  Identities=17%  Similarity=0.159  Sum_probs=150.0

Q ss_pred             hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      ..+++.|++..+...  .+|..++.+++|++|+|++|.+...| ....+++|++|+|.++.+.  .+..-+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEE
Confidence            468999999877653  78888888999999999999887544 3568899999999999876  233447789999999


Q ss_pred             EEeeeEeCC-CceeEE--------EecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce--eeecCCCc
Q 017981          194 SIKGYIYGT-DSVTLN--------IPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY--VVHELHSL  262 (363)
Q Consensus       194 ~L~~c~~~~-~~~~l~--------i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~L  262 (363)
                      .+.+|...+ ....+.        -..++|+.|++.+|.....    ......+++|++|+++++.....  .+..+++|
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l----p~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L  231 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL----PASIANLQNLKSLKIRNSPLSALGPAIHHLPKL  231 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC----CGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc----hHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence            999986322 111111        1368899999999876422    11123568899999998766543  35678888


Q ss_pred             eEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHH
Q 017981          263 TKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLS  342 (363)
Q Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  342 (363)
                      +.+++..+....           .....+..+++|+.|+++++...  ..+   .. .+..+++|+.|++++|...+  .
T Consensus       232 ~~L~Ls~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~--~~~---p~-~~~~l~~L~~L~L~~n~~~~--~  292 (328)
T 4fcg_A          232 EELDLRGCTALR-----------NYPPIFGGRAPLKRLILKDCSNL--LTL---PL-DIHRLTQLEKLDLRGCVNLS--R  292 (328)
T ss_dssp             CEEECTTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTC--CBC---CT-TGGGCTTCCEEECTTCTTCC--C
T ss_pred             CEEECcCCcchh-----------hhHHHhcCCCCCCEEECCCCCch--hhc---ch-hhhcCCCCCEEeCCCCCchh--h
Confidence            888876543211           02233667888999999886541  111   11 33467788888888875432  2


Q ss_pred             HHHHHHhCCCCcceEEeee
Q 017981          343 LAHIFSRMPKLESIVFEEV  361 (363)
Q Consensus       343 l~~ll~~~p~L~~L~l~~~  361 (363)
                      ++.-+.++|+|+.+.+..+
T Consensus       293 iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          293 LPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CCGGGGGSCTTCEEECCGG
T ss_pred             ccHHHhhccCceEEeCCHH
Confidence            4556778888888876543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.34  E-value=5.8e-12  Score=113.91  Aligned_cols=224  Identities=15%  Similarity=0.134  Sum_probs=145.1

Q ss_pred             CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      +++++|+++.+...  .++. .+..+++|++|+|++|.+... + .+..+++|++|+|.++.+++-. ...+.++++|++
T Consensus        52 ~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSE
T ss_pred             ccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCE
Confidence            47899998766542  3444 567799999999999988754 2 3668999999999999886542 344788999999


Q ss_pred             EEEeeeEeCCCcee-EEE-ecCCcceEEEEecC-CccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEE
Q 017981          193 LSIKGYIYGTDSVT-LNI-PSLTLKRLRLELEA-PEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAV  266 (363)
Q Consensus       193 L~L~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~  266 (363)
                      |.+.+|..... .. -.+ ..++|+.|++.+|. .......   ....+++|++|+++++.....   .+..+++|+.+.
T Consensus       129 L~L~~n~l~~l-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  204 (353)
T 2z80_A          129 LNLLGNPYKTL-GETSLFSHLTKLQILRVGNMDTFTKIQRK---DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI  204 (353)
T ss_dssp             EECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred             EECCCCCCccc-CchhhhccCCCCcEEECCCCccccccCHH---HccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence            99999886554 22 122 35899999999984 2211000   113468899999999876544   356678888888


Q ss_pred             EeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccc-ccCCCCCCCCCcceEEEEeccCCChH---H
Q 017981          267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDY-ANDHSFPTFPFLNRLEVEGVGACGWL---S  342 (363)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~---~  342 (363)
                      +.....           ......++..+++++.|+++++.+   ..+.. ... .......++.+++....- ...   .
T Consensus       205 l~~n~l-----------~~~~~~~~~~~~~L~~L~L~~n~l---~~~~~~~l~-~~~~~~~l~~l~L~~~~l-~~~~l~~  268 (353)
T 2z80_A          205 LHMKQH-----------ILLLEIFVDVTSSVECLELRDTDL---DTFHFSELS-TGETNSLIKKFTFRNVKI-TDESLFQ  268 (353)
T ss_dssp             EECSCS-----------TTHHHHHHHHTTTEEEEEEESCBC---TTCCCC-------CCCCCCEEEEESCBC-CHHHHHH
T ss_pred             CCCCcc-----------ccchhhhhhhcccccEEECCCCcc---ccccccccc-cccccchhhccccccccc-cCcchhh
Confidence            865432           111344566789999999999876   33221 111 112234455566655432 222   3


Q ss_pred             HHHHHHhCCCCcceEEeeec
Q 017981          343 LAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       343 l~~ll~~~p~L~~L~l~~~~  362 (363)
                      +...+..+++|+.|+++.++
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSC
T ss_pred             hHHHHhcccCCCEEECCCCC
Confidence            34445666666666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.33  E-value=5e-13  Score=129.37  Aligned_cols=194  Identities=18%  Similarity=0.119  Sum_probs=98.7

Q ss_pred             cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEe----------cCCccccCC
Q 017981          161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLEL----------EAPEEDYIT  230 (363)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~----------~~~~~~~~~  230 (363)
                      .+++|++|+|.+|.+++..+..++..||+|++|.+..+..+.....+.-.+++|++|++.+          |...+. ..
T Consensus       291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~  369 (592)
T 3ogk_B          291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RG  369 (592)
T ss_dssp             GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HH
T ss_pred             hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH-HH
Confidence            4667777777777765556666677777777777764321110011111246677777763          322111 00


Q ss_pred             ceEEEEeccCcceEEEeecCCCcee---e-ecCCCceEEEEeeeeceeccCCC--------------------------c
Q 017981          231 KYKVIIRAPNLEQLYIRDHGPGLYV---V-HELHSLTKAVVDYGIECILDYDS--------------------------P  280 (363)
Q Consensus       231 ~~~~~~~~p~L~~L~l~~~~~~~~~---~-~~~~~L~~~~l~~~~~~~~~~~~--------------------------~  280 (363)
                      ...+...+|+|++|.++.+......   + ..+++|+.+.+.......  .+.                          .
T Consensus       370 ~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n--~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE--RITDLPLDNGVRSLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS--CCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred             HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc--cccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence            1111123456666666444332211   1 125555555554221000  000                          0


Q ss_pred             hhhHHH-HHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEe
Q 017981          281 EDVAQA-VVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFE  359 (363)
Q Consensus       281 ~~~~~~-~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~  359 (363)
                      +...+. +..+...+++|+.|.++.+.+.+ ..+..    .+..+++|++|++++|. .+..++..+...+|+|+.|+++
T Consensus       448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~----~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls  521 (592)
T 3ogk_B          448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESD-EGLME----FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQ  521 (592)
T ss_dssp             GGCCHHHHHHHHHSCTTCCEEEECSCCSSH-HHHHH----HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEE
T ss_pred             CCccHHHHHHHHHhCccceEeeccCCCCCH-HHHHH----HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECc
Confidence            011111 33333446666666666554311 11111    12245678888888887 4777788888888888888888


Q ss_pred             eecC
Q 017981          360 EVRM  363 (363)
Q Consensus       360 ~~~~  363 (363)
                      .+++
T Consensus       522 ~n~i  525 (592)
T 3ogk_B          522 GYRA  525 (592)
T ss_dssp             SCBC
T ss_pred             CCcC
Confidence            7763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.31  E-value=3e-13  Score=122.01  Aligned_cols=246  Identities=13%  Similarity=0.130  Sum_probs=133.2

Q ss_pred             CCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccce
Q 017981           88 GNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKI  167 (363)
Q Consensus        88 ~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~  167 (363)
                      ..++.+.+....-.....      ....++++.|++..+...  .+ +.+..+++|++|++++|.+...+....+++|++
T Consensus        66 ~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~--~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~  136 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKIT--DI-SALQNLTNLRELYLNEDNISDISPLANLTKMYS  136 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCC--CC-GGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCE
T ss_pred             CCccEEEccCCccccchh------hhcCCcCCEEEccCCccc--Cc-hHHcCCCcCCEEECcCCcccCchhhccCCceeE
Confidence            456667666543211111      112247777777665432  22 245667888888888887775555667888888


Q ss_pred             eeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEe
Q 017981          168 LHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIR  247 (363)
Q Consensus       168 L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~  247 (363)
                      |++.++..... +.. +..+++|++|.+.+|...+. .. -...++|+.|++.+|.......     ...+++|+.|.++
T Consensus       137 L~l~~n~~~~~-~~~-~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~  207 (347)
T 4fmz_A          137 LNLGANHNLSD-LSP-LSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTAY  207 (347)
T ss_dssp             EECTTCTTCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCCCCCGG-----GGGCTTCCEEECC
T ss_pred             EECCCCCCccc-ccc-hhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCccccccc-----ccCCCccceeecc
Confidence            88887743333 111 67788888888888775554 22 1124788899888886543211     1233445555555


Q ss_pred             ecCCCcee-eecCCCceEEEEeeeeceecc-----------CCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccc
Q 017981          248 DHGPGLYV-VHELHSLTKAVVDYGIECILD-----------YDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDY  315 (363)
Q Consensus       248 ~~~~~~~~-~~~~~~L~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~  315 (363)
                      ++...... +..+++|+.+.+..+......           ....+...  -...+..+++|+.|.++++.+   ..+. 
T Consensus       208 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l---~~~~-  281 (347)
T 4fmz_A          208 VNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS--DINAVKDLTKLKMLNVGSNQI---SDIS-  281 (347)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--CCGGGTTCTTCCEEECCSSCC---CCCG-
T ss_pred             cCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccC--CChhHhcCCCcCEEEccCCcc---CCCh-
Confidence            44332211 334444444444332210000           00000000  002245556666666666554   2221 


Q ss_pred             ccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          316 ANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       316 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                          .+..+++|+.|++..+.- .. .....+..+|+|+.|+++.+++
T Consensus       282 ----~~~~l~~L~~L~L~~n~l-~~-~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          282 ----VLNNLSQLNSLFLNNNQL-GN-EDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             ----GGGGCTTCSEEECCSSCC-CG-GGHHHHHTCTTCSEEECCSSSC
T ss_pred             ----hhcCCCCCCEEECcCCcC-CC-cChhHhhccccCCEEEccCCcc
Confidence                233556788888877754 22 2334567788899988887754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.31  E-value=4.3e-13  Score=121.06  Aligned_cols=214  Identities=14%  Similarity=0.122  Sum_probs=118.1

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEeccccccc-CCCcccCcccceeeeeeEEEccchH--------------
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIK-TPPTIFFPSAKILHVILNTIDNNFS--------------  180 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l--------------  180 (363)
                      +++++|++..+...  .++. +..+++|++|++++|.... .+....+++|+.|++.++.+.+..-              
T Consensus       110 ~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          110 TNLRELYLNEDNIS--DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY  186 (347)
T ss_dssp             TTCSEEECTTSCCC--CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTT
T ss_pred             CcCCEEECcCCccc--Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccC
Confidence            46777777554421  2222 4445666666666553221 2223345555555555544333210              


Q ss_pred             ------HHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce
Q 017981          181 ------DWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY  254 (363)
Q Consensus       181 ------~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~  254 (363)
                            .. +..+++|+.|.+.+|...+. .. ....++|+.|++.+|.......     ...+++|++|+++++.....
T Consensus       187 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~  258 (347)
T 4fmz_A          187 NQIEDISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTNQISDI  258 (347)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCC
T ss_pred             Cccccccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCCcc-----hhcCCCCCEEECCCCccCCC
Confidence                  01 33444444444444443322 11 1123567777776665433211     23457777777777655433


Q ss_pred             -eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEE
Q 017981          255 -VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVE  333 (363)
Q Consensus       255 -~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~  333 (363)
                       .+..+++|+.+.+..+.-..            + ..+..+++|+.|+++++.+   .....  + .+..+++|+.|+++
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~------------~-~~~~~l~~L~~L~L~~n~l---~~~~~--~-~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISD------------I-SVLNNLSQLNSLFLNNNQL---GNEDM--E-VIGGLTNLTTLFLS  319 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCC------------C-GGGGGCTTCSEEECCSSCC---CGGGH--H-HHHTCTTCSEEECC
T ss_pred             hhHhcCCCcCEEEccCCccCC------------C-hhhcCCCCCCEEECcCCcC---CCcCh--h-HhhccccCCEEEcc
Confidence             24566777777765443211            1 3478899999999999876   32221  1 23357789999999


Q ss_pred             eccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          334 GVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       334 ~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      ++.-.+...    +..+|+|+.|++..+++
T Consensus       320 ~n~l~~~~~----~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          320 QNHITDIRP----LASLSKMDSADFANQVI  345 (347)
T ss_dssp             SSSCCCCGG----GGGCTTCSEESSSCC--
T ss_pred             CCccccccC----hhhhhccceeehhhhcc
Confidence            987533222    78899999999998864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.30  E-value=1.9e-12  Score=115.88  Aligned_cols=200  Identities=13%  Similarity=0.046  Sum_probs=141.6

Q ss_pred             CCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981          140 CKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR  218 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~  218 (363)
                      .+++++|+|+++.+...| ....+++|++|+|.++.+.  .+...+..+++|++|+|.+|.+..+ ..--...++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEE
Confidence            478999999999888654 3567999999999999876  2334467899999999999976544 11111248999999


Q ss_pred             EEecCCccccCCceE------EEEeccCcceEEEeecCCCce--eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHH
Q 017981          219 LELEAPEEDYITKYK------VIIRAPNLEQLYIRDHGPGLY--VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDM  290 (363)
Q Consensus       219 l~~~~~~~~~~~~~~------~~~~~p~L~~L~l~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~  290 (363)
                      +.+|...........      ....+++|++|+++++....+  .+..+++|+.+.+..+....            +...
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~------------l~~~  224 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA------------LGPA  224 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC------------CCGG
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc------------Cchh
Confidence            999865432111111      124589999999999876533  36788999999997654311            2224


Q ss_pred             hhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          291 LRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       291 l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      +..+++|+.|+++++..   ..  .... .+..+++|+.|++..|....  .++.-+.++++|+.|+|+.++
T Consensus       225 l~~l~~L~~L~Ls~n~~---~~--~~p~-~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTA---LR--NYPP-IFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             GGGCTTCCEEECTTCTT---CC--BCCC-CTTCCCCCCEEECTTCTTCC--BCCTTGGGCTTCCEEECTTCT
T ss_pred             hccCCCCCEEECcCCcc---hh--hhHH-HhcCCCCCCEEECCCCCchh--hcchhhhcCCCCCEEeCCCCC
Confidence            77899999999998755   11  1112 45567889999999875422  133346889999999998865

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.29  E-value=5.3e-13  Score=129.23  Aligned_cols=193  Identities=18%  Similarity=0.172  Sum_probs=95.7

Q ss_pred             cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecC--------CccccCCce
Q 017981          161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEA--------PEEDYITKY  232 (363)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~--------~~~~~~~~~  232 (363)
                      .+++|++|+|.++.+++.++..++..||+|++|.+.+|..+.....+...+++|++|++.+|.        ..++ ....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~-~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE-QGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH-HHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH-HHHH
Confidence            468888888888887666777788888999999888873111001111135788888885531        1110 0011


Q ss_pred             EEEEeccCcceEEEeecCCCcee----eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccc
Q 017981          233 KVIIRAPNLEQLYIRDHGPGLYV----VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMF  308 (363)
Q Consensus       233 ~~~~~~p~L~~L~l~~~~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~  308 (363)
                      .+...+|+|++|.++++......    ...+++|+.+.+.+.................+..++..+++|+.|.+++ .+ 
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l-  443 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL-  443 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC-
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc-
Confidence            11223677888866655443221    1346777777776322000000000001122444556666666666654 11 


Q ss_pred             cccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeee
Q 017981          309 ALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEV  361 (363)
Q Consensus       309 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  361 (363)
                      +++.+....    ..+++|+.|+++.+. .++.++..+..+||+|+.|+|+.+
T Consensus       444 ~~~~~~~l~----~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          444 TDKVFEYIG----TYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC  491 (594)
T ss_dssp             CHHHHHHHH----HHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESC
T ss_pred             cHHHHHHHH----HhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCC
Confidence            111111000    013345555554443 244444444455555555555444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.29  E-value=1.8e-14  Score=129.42  Aligned_cols=233  Identities=14%  Similarity=0.180  Sum_probs=162.0

Q ss_pred             HHHHHHHhC-CceEEEEEcCCCccccCCcccccC--CcccEEEecccccccC-CCcccCcccceeeeeeEEEccchHHHH
Q 017981          108 LWVSFATMR-NVREIEISLNDDECIELPHCIYTC--KTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILNTIDNNFSDWL  183 (363)
Q Consensus       108 ~wi~~~~~~-~l~~L~l~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l  183 (363)
                      +|-.....+ .++.+++......    +..+...  ++++.|++.++.+... +....+++|++|+|.++.+.+.++..+
T Consensus        38 ~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~  113 (336)
T 2ast_B           38 RWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI  113 (336)
T ss_dssp             HHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             HHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence            465444322 4777777543321    3334445  8999999999988754 445689999999999999877778889


Q ss_pred             hccCCccceEEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec-CCCce----eee
Q 017981          184 FSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH-GPGLY----VVH  257 (363)
Q Consensus       184 l~~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~-~~~~~----~~~  257 (363)
                      +..||+|++|.+.+|...+. ..-.+ ..++|++|++.+|..... .........+|+|++|+++++ .....    .+.
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            99999999999999874321 11111 258999999999942211 011222346799999999998 65532    256


Q ss_pred             cCC-CceEEEEeeeeceeccCCCchhhH-HHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981          258 ELH-SLTKAVVDYGIECILDYDSPEDVA-QAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV  335 (363)
Q Consensus       258 ~~~-~L~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~  335 (363)
                      .++ +|+.+.+..+..         ... ..+...+..+++|+.|.++++...+.+.+    . .+..+++|++|++.+|
T Consensus       192 ~l~~~L~~L~l~~~~~---------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----~-~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          192 HVSETITQLNLSGYRK---------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF----Q-EFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             HSCTTCCEEECCSCGG---------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG----G-GGGGCTTCCEEECTTC
T ss_pred             hcccCCCEEEeCCCcc---------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH----H-HHhCCCCCCEeeCCCC
Confidence            789 999999875531         111 23667888999999999999863222222    2 3446688999999999


Q ss_pred             cCCChHHHHHHHHhCCCCcceEEeee
Q 017981          336 GACGWLSLAHIFSRMPKLESIVFEEV  361 (363)
Q Consensus       336 ~~~~~~~l~~ll~~~p~L~~L~l~~~  361 (363)
                      ......++. .+.++|+|+.|++.++
T Consensus       258 ~~~~~~~~~-~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          258 YDIIPETLL-ELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             CCCCHHHHH-HHhcCCCCCEEeccCc
Confidence            765666553 3477999999998753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.27  E-value=7.5e-13  Score=117.47  Aligned_cols=141  Identities=15%  Similarity=0.065  Sum_probs=94.2

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      +++++|++..+...  .++ .+..+++|++|+|++|.+...+....+++|++|+|.++.+.+-.   -+..+++|++|.+
T Consensus        41 ~~L~~L~l~~~~i~--~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCcc--Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCEEEC
Confidence            58888888766532  344 46678999999999988876555778889999999998876542   3677899999999


Q ss_pred             eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee-eecCCCceEEEEee
Q 017981          196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV-VHELHSLTKAVVDY  269 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~~~l~~  269 (363)
                      .+|...+. .. -...++|+.|++.+|.......     ...+++|++|+++++...... +..+++|+.+.+..
T Consensus       115 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          115 TSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD  182 (308)
T ss_dssp             TTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCC
Confidence            98876555 22 1123788888888876543211     234577777777776543221 44455555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.27  E-value=3e-12  Score=120.27  Aligned_cols=75  Identities=20%  Similarity=0.158  Sum_probs=46.5

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      ++++.|.+..+..  ..++. +..+++|++|++++|.+...+....+++|++|++.++.+.+-.  . +..+++|++|.+
T Consensus        90 ~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l  163 (466)
T 1o6v_A           90 TKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--A-LSGLTSLQQLSF  163 (466)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG--G-GTTCTTCSEEEE
T ss_pred             ccCCEEECCCCcc--ccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh--h-hccCCcccEeec
Confidence            4677777765543  22333 5667788888887777765555667777888888877765531  1 344555555554


Q ss_pred             e
Q 017981          196 K  196 (363)
Q Consensus       196 ~  196 (363)
                      .
T Consensus       164 ~  164 (466)
T 1o6v_A          164 G  164 (466)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.26  E-value=8.6e-14  Score=127.59  Aligned_cols=235  Identities=17%  Similarity=0.094  Sum_probs=131.8

Q ss_pred             CCceEEEEEcCCCc---cccCCcccccCCcccEEEecccccccC----C-C-------cccCcccceeeeeeEEEccch-
Q 017981          116 RNVREIEISLNDDE---CIELPHCIYTCKTLEVLKLDMNFFIKT----P-P-------TIFFPSAKILHVILNTIDNNF-  179 (363)
Q Consensus       116 ~~l~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~----~-~-------~~~~~~L~~L~L~~~~~~~~~-  179 (363)
                      ++++.|+++.+...   ...++..+..+++|++|+|++|.+...    | +       ...+++|++|+|+++.+.+.+ 
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            46676666544321   112333455677777777777643311    1 1       135677777777777776652 


Q ss_pred             --HHHHhccCCccceEEEeeeEeCCCceeEEEe-----c---------CCcceEEEEecCCccccCCce---EEEEeccC
Q 017981          180 --SDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-----S---------LTLKRLRLELEAPEEDYITKY---KVIIRAPN  240 (363)
Q Consensus       180 --l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-----~---------~~L~~L~l~~~~~~~~~~~~~---~~~~~~p~  240 (363)
                        +...+..|++|++|.|.+|.+... ....+.     .         ++|+.|.+.+|.....  ...   .....+++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~~~~  188 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG--SMKEWAKTFQSHRL  188 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHH-HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG--GHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHH-HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH--HHHHHHHHHHhCCC
Confidence              344456777777777777764211 000111     1         6777777777765321  011   11124567


Q ss_pred             cceEEEeecCCCce--------eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccc-
Q 017981          241 LEQLYIRDHGPGLY--------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALD-  311 (363)
Q Consensus       241 L~~L~l~~~~~~~~--------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~-  311 (363)
                      |++|.++++.....        .+..+++|+.+.+..+.-       .......+...+..+++|+.|.++++.+.+.. 
T Consensus       189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l-------~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-------THLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-------HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC-------CcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            88888887765411        345677788777754432       11112336667788888888888887662110 


Q ss_pred             -ccccccCCCCCCCCCcceEEEEeccCCChH---HHHHHH-HhCCCCcceEEeeecC
Q 017981          312 -RLDYANDHSFPTFPFLNRLEVEGVGACGWL---SLAHIF-SRMPKLESIVFEEVRM  363 (363)
Q Consensus       312 -~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~l~~ll-~~~p~L~~L~l~~~~~  363 (363)
                       .+...+.  ...+++|+.|+++++.- +..   .+...+ .++|+|+.|+++.|++
T Consensus       262 ~~l~~~l~--~~~~~~L~~L~L~~n~i-~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          262 AAVVDAFS--KLENIGLQTLRLQYNEI-ELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHHHHH--TCSSCCCCEEECCSSCC-BHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHHHHh--hccCCCeEEEECcCCcC-CHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence             0111111  02366788888888754 332   244444 5688888888887754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.24  E-value=3.9e-12  Score=119.50  Aligned_cols=220  Identities=14%  Similarity=0.164  Sum_probs=125.5

Q ss_pred             hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      .++++.|+++.+..  ..+++ +..+++|++|++++|.+...+....+++|++|+|.++.+.+-.  . +..+++|++|.
T Consensus        67 l~~L~~L~Ls~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~  140 (466)
T 1o6v_A           67 LNNLTQINFSNNQL--TDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLE  140 (466)
T ss_dssp             CTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEE
T ss_pred             hcCCCEEECCCCcc--CCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEE
Confidence            36899999987654  23444 7789999999999998886655778999999999999776542  2 78899999999


Q ss_pred             EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeece
Q 017981          195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIEC  273 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~  273 (363)
                      +.+|...+. ..+ ...++|+.|.+.++....     .. ...+++|++|+++++..... .+..+++|+.+.+..+...
T Consensus       141 l~~n~l~~~-~~~-~~l~~L~~L~l~~~~~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~  212 (466)
T 1o6v_A          141 LSSNTISDI-SAL-SGLTSLQQLSFGNQVTDL-----KP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS  212 (466)
T ss_dssp             EEEEEECCC-GGG-TTCTTCSEEEEEESCCCC-----GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             CCCCccCCC-hhh-ccCCcccEeecCCcccCc-----hh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccc
Confidence            999986654 220 113566666665322110     00 12334555555555433221 1334444444444332210


Q ss_pred             eccC-----------CCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHH
Q 017981          274 ILDY-----------DSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLS  342 (363)
Q Consensus       274 ~~~~-----------~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  342 (363)
                      ....           ...+...  -...+..+++|+.|.++++.+   ..+.     .+..+++|+.|+++.+.-.....
T Consensus       213 ~~~~~~~l~~L~~L~l~~n~l~--~~~~l~~l~~L~~L~l~~n~l---~~~~-----~~~~l~~L~~L~l~~n~l~~~~~  282 (466)
T 1o6v_A          213 DITPLGILTNLDELSLNGNQLK--DIGTLASLTNLTDLDLANNQI---SNLA-----PLSGLTKLTELKLGANQISNISP  282 (466)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCC---CCCG-----GGTTCTTCSEEECCSSCCCCCGG
T ss_pred             ccccccccCCCCEEECCCCCcc--cchhhhcCCCCCEEECCCCcc---ccch-----hhhcCCCCCEEECCCCccCcccc
Confidence            0000           0000000  001244556666666666544   2211     13355667777777764422221


Q ss_pred             HHHHHHhCCCCcceEEeeec
Q 017981          343 LAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       343 l~~ll~~~p~L~~L~l~~~~  362 (363)
                          +..+++|+.|++..++
T Consensus       283 ----~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          283 ----LAGLTALTNLELNENQ  298 (466)
T ss_dssp             ----GTTCTTCSEEECCSSC
T ss_pred             ----ccCCCccCeEEcCCCc
Confidence                5677888888877665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.23  E-value=3.4e-13  Score=119.96  Aligned_cols=220  Identities=12%  Similarity=0.082  Sum_probs=103.6

Q ss_pred             CCceEEEEEc-CCCccccCCcccccCCcccEEEeccccccc-CC-CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISL-NDDECIELPHCIYTCKTLEVLKLDMNFFIK-TP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      +.++.|+++. ... ...+|..+..+++|++|+|++|.+.. .+ .+..+++|++|+|.++.+.+. +...+..+++|++
T Consensus        76 ~~L~~L~L~~~n~l-~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~  153 (313)
T 1ogq_A           76 PYLNFLYIGGINNL-VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTE-ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred             CCCCeeeCCCCCcc-cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence            4666666653 322 22455555666666666666666542 22 244566666666666666533 1222455666666


Q ss_pred             EEEeeeEeCCC-ceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCC---ceeeecCCCceEEEEe
Q 017981          193 LSIKGYIYGTD-SVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG---LYVVHELHSLTKAVVD  268 (363)
Q Consensus       193 L~L~~c~~~~~-~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~~~l~  268 (363)
                      |.+.+|...+. ...+.--.++|+.|++.+|.........    +....|++|+++++...   ...+..+++|+.+.+.
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~----~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT----FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG----GGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH----HhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence            66666553211 0000001126666666666432110000    01112666666665332   1224556666666655


Q ss_pred             eeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH
Q 017981          269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS  348 (363)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~  348 (363)
                      .+....            ....+..+++|+.|+++.+.+   ....  .. .+..+++|+.|+++++.-.+.  ++.. .
T Consensus       230 ~N~l~~------------~~~~~~~l~~L~~L~Ls~N~l---~~~~--p~-~l~~l~~L~~L~Ls~N~l~~~--ip~~-~  288 (313)
T 1ogq_A          230 KNSLAF------------DLGKVGLSKNLNGLDLRNNRI---YGTL--PQ-GLTQLKFLHSLNVSFNNLCGE--IPQG-G  288 (313)
T ss_dssp             SSEECC------------BGGGCCCCTTCCEEECCSSCC---EECC--CG-GGGGCTTCCEEECCSSEEEEE--CCCS-T
T ss_pred             CCceee------------ecCcccccCCCCEEECcCCcc---cCcC--Ch-HHhcCcCCCEEECcCCccccc--CCCC-c
Confidence            433210            001134556677777766654   2110  01 223455666666666532100  1111 4


Q ss_pred             hCCCCcceEEeeec
Q 017981          349 RMPKLESIVFEEVR  362 (363)
Q Consensus       349 ~~p~L~~L~l~~~~  362 (363)
                      ..++|+.|++..|+
T Consensus       289 ~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          289 NLQRFDVSAYANNK  302 (313)
T ss_dssp             TGGGSCGGGTCSSS
T ss_pred             cccccChHHhcCCC
Confidence            45666666665543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.21  E-value=9.7e-13  Score=124.01  Aligned_cols=19  Identities=21%  Similarity=0.296  Sum_probs=12.1

Q ss_pred             HHhhccCcceEEEEeCCcc
Q 017981          289 DMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       289 ~~l~~l~~l~~L~l~~~~~  307 (363)
                      ..+..+++|+.|+++++.+
T Consensus       242 ~~~~~l~~L~~L~Ls~n~l  260 (477)
T 2id5_A          242 LAVRHLVYLRFLNLSYNPI  260 (477)
T ss_dssp             HHHTTCTTCCEEECCSSCC
T ss_pred             HHhcCccccCeeECCCCcC
Confidence            3456667777777766654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.21  E-value=1e-12  Score=123.91  Aligned_cols=222  Identities=17%  Similarity=0.119  Sum_probs=122.6

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      +++.|+++.+.. ....+..+..+++|++|+|+++.+...  ..+..+++|++|+|.++.+++-. ...+..+++|+.|.
T Consensus       105 ~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~  182 (477)
T 2id5_A          105 NLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLR  182 (477)
T ss_dssp             TCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEE
T ss_pred             CCCEEECCCCcc-ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEe
Confidence            555555544432 112233444566666666666655432  23446667777777776654432 23456677777777


Q ss_pred             EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeee
Q 017981          195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGI  271 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~  271 (363)
                      +.+|...+.........++|+.|++.+|.......   ......++|++|+++++......   +..+++|+.+++..+.
T Consensus       183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT---PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC---TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred             CCCCcCcEeChhhcccCcccceeeCCCCccccccC---cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence            77765322200011123677777777764322100   00012347888888877655433   5677888888776543


Q ss_pred             ceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCC
Q 017981          272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMP  351 (363)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p  351 (363)
                      -...           ....+..+++|+.|.++++.+   ..+..  . .+..+++|+.|+++.+.-...  ....+..++
T Consensus       260 l~~~-----------~~~~~~~l~~L~~L~L~~n~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~  320 (477)
T 2id5_A          260 ISTI-----------EGSMLHELLRLQEIQLVGGQL---AVVEP--Y-AFRGLNYLRVLNVSGNQLTTL--EESVFHSVG  320 (477)
T ss_dssp             CCEE-----------CTTSCTTCTTCCEEECCSSCC---SEECT--T-TBTTCTTCCEEECCSSCCSCC--CGGGBSCGG
T ss_pred             CCcc-----------ChhhccccccCCEEECCCCcc---ceECH--H-HhcCcccCCEEECCCCcCcee--CHhHcCCCc
Confidence            2110           123356778888888888766   33221  1 344667788888887643221  112456678


Q ss_pred             CCcceEEeeec
Q 017981          352 KLESIVFEEVR  362 (363)
Q Consensus       352 ~L~~L~l~~~~  362 (363)
                      +|+.|+++.|+
T Consensus       321 ~L~~L~l~~N~  331 (477)
T 2id5_A          321 NLETLILDSNP  331 (477)
T ss_dssp             GCCEEECCSSC
T ss_pred             ccCEEEccCCC
Confidence            88888887765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.20  E-value=5.1e-12  Score=115.91  Aligned_cols=104  Identities=12%  Similarity=0.128  Sum_probs=61.3

Q ss_pred             cCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccccc
Q 017981          239 PNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYAN  317 (363)
Q Consensus       239 p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~  317 (363)
                      ++|++|.++++..... .+..+++|+.+++..+.-..           .....+..+++|+.|.++++.+   ..+..  
T Consensus       226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l---~~~~~--  289 (390)
T 3o6n_A          226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-----------IMYHPFVKMQRLERLYISNNRL---VALNL--  289 (390)
T ss_dssp             SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE-----------EESGGGTTCSSCCEEECCSSCC---CEEEC--
T ss_pred             ccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC-----------cChhHccccccCCEEECCCCcC---cccCc--
Confidence            4556666555544322 24456666666665443211           0123456677888888877766   33322  


Q ss_pred             CCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          318 DHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       318 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                        ....+++|+.|+++.+.-..   +..-+..+|+|+.|+++.+++
T Consensus       290 --~~~~l~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          290 --YGQPIPTLKVLDLSHNHLLH---VERNQPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             --SSSCCTTCCEEECCSSCCCC---CGGGHHHHTTCSEEECCSSCC
T ss_pred             --ccCCCCCCCEEECCCCccee---cCccccccCcCCEEECCCCcc
Confidence              23356789999998875422   233346679999999988764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.19  E-value=5.4e-12  Score=113.00  Aligned_cols=223  Identities=14%  Similarity=0.044  Sum_probs=108.6

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .+++.|++..+... ...|..+..+++|++|+|++|.+...+. ..+++|++|++.++.+..-. ...+.++++|++|.+
T Consensus        76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l  152 (330)
T 1xku_A           76 KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVEL  152 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccCh-hhcccccEEECCCCcccccC-HhHhcCCccccEEEC
Confidence            35666666544321 1224445556666666666665553222 12245555555555443321 222344555555555


Q ss_pred             eee--------------------------EeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec
Q 017981          196 KGY--------------------------IYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH  249 (363)
Q Consensus       196 ~~c--------------------------~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  249 (363)
                      .+|                          ........+   .++|+.|++.+|.......   .....+++|++|+++++
T Consensus       153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n  226 (330)
T 1xku_A          153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDA---ASLKGLNNLAKLGLSFN  226 (330)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECT---GGGTTCTTCCEEECCSS
T ss_pred             CCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCC
Confidence            544                          322220000   1455555555554321100   00123456666666665


Q ss_pred             CCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccc-cc-C-CCCCC
Q 017981          250 GPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDY-AN-D-HSFPT  323 (363)
Q Consensus       250 ~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~-~-~~~~~  323 (363)
                      .....   .+..+++|+.+.+..+.-.            .+...+..+++|+.|.++++.+   ..+.. .+ . .....
T Consensus       227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~------------~lp~~l~~l~~L~~L~l~~N~i---~~~~~~~f~~~~~~~~  291 (330)
T 1xku_A          227 SISAVDNGSLANTPHLRELHLNNNKLV------------KVPGGLADHKYIQVVYLHNNNI---SAIGSNDFCPPGYNTK  291 (330)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCSSCCS------------SCCTTTTTCSSCCEEECCSSCC---CCCCTTSSSCSSCCTT
T ss_pred             cCceeChhhccCCCCCCEEECCCCcCc------------cCChhhccCCCcCEEECCCCcC---CccChhhcCCcccccc
Confidence            54332   2445566666665544321            0222356677888888887766   43332 11 1 01123


Q ss_pred             CCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          324 FPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       324 ~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      ...|+.|++.+++...+.....-+.++++|+.++++.|+
T Consensus       292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            456778888777653333334567788999999988775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.19  E-value=4.9e-12  Score=116.02  Aligned_cols=122  Identities=14%  Similarity=0.156  Sum_probs=75.0

Q ss_pred             CcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHH
Q 017981          213 TLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVD  289 (363)
Q Consensus       213 ~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~  289 (363)
                      +|+.|++.+|.....     .....+|+|++|+++++.....   .+..+++|+.+.+..+.-..            +..
T Consensus       227 ~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~  289 (390)
T 3o6n_A          227 ELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA------------LNL  289 (390)
T ss_dssp             SCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE------------EEC
T ss_pred             cccEEECCCCCCccc-----HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc------------cCc
Confidence            455555555543321     1123468888888888866544   34567888888776543211            111


Q ss_pred             HhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          290 MLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       290 ~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      .+..+++|+.|.++++.+   ..+..    .+..+++|+.|++.++.-.+..     +..+++|+.|+++.|++
T Consensus       290 ~~~~l~~L~~L~L~~n~l---~~~~~----~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          290 YGQPIPTLKVLDLSHNHL---LHVER----NQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             SSSCCTTCCEEECCSSCC---CCCGG----GHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCE
T ss_pred             ccCCCCCCCEEECCCCcc---eecCc----cccccCcCCEEECCCCccceeC-----chhhccCCEEEcCCCCc
Confidence            234577888888888766   43322    2335677888888887643321     56788888888887753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.19  E-value=3.8e-13  Score=125.95  Aligned_cols=81  Identities=19%  Similarity=0.107  Sum_probs=36.8

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      +++.|++..+... ...+..+.++++|++|+|++|.+...  ..+..+++|++|+|.++.++.-. ...+..+++|++|.
T Consensus        76 ~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           76 NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELW  153 (452)
T ss_dssp             TCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEEE
T ss_pred             CccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCEEE
Confidence            4555555443321 11223334455555555555544432  12334555555555555443221 12234455555555


Q ss_pred             EeeeE
Q 017981          195 IKGYI  199 (363)
Q Consensus       195 L~~c~  199 (363)
                      |.+|.
T Consensus       154 L~~N~  158 (452)
T 3zyi_A          154 LRNNP  158 (452)
T ss_dssp             CCSCC
T ss_pred             CCCCC
Confidence            55544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.18  E-value=7.1e-13  Score=118.12  Aligned_cols=210  Identities=14%  Similarity=0.075  Sum_probs=115.8

Q ss_pred             CCceEEEEEcCCCccccCC-cccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          116 RNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      +++++|+++.+...  .++ ..+..+++|++|+|++|.+...+.+..+++|++|+|.++.+++-      ..+++|++|.
T Consensus        34 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l------~~~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE------EECTTCCEEE
T ss_pred             CCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccc------cCCCCcCEEE
Confidence            36777777665431  233 34556788888888887776444466777888888887776542      1346666666


Q ss_pred             EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEec-------------------------cCcceEEEeec
Q 017981          195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRA-------------------------PNLEQLYIRDH  249 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------------------p~L~~L~l~~~  249 (363)
                      +.+|...+.   .....++|+.|.+.+|.......   .....+                         ++|++|+++++
T Consensus       106 l~~n~l~~~---~~~~~~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          106 AANNNISRV---SCSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             CCSSCCSEE---EECCCSSCEEEECCSSCCCSGGG---BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CCCCccCCc---CccccCCCCEEECCCCCCCCccc---hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            666553221   11113556666665554332100   000123                         44555555444


Q ss_pred             CCCcee-eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcc
Q 017981          250 GPGLYV-VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLN  328 (363)
Q Consensus       250 ~~~~~~-~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~  328 (363)
                      ...... ...+++|+.+++..+.-..            +...+..+++|+.|+++++.+   ..+..    .+..+++|+
T Consensus       180 ~l~~~~~~~~l~~L~~L~Ls~N~l~~------------l~~~~~~l~~L~~L~L~~N~l---~~l~~----~~~~l~~L~  240 (317)
T 3o53_A          180 FIYDVKGQVVFAKLKTLDLSSNKLAF------------MGPEFQSAAGVTWISLRNNKL---VLIEK----ALRFSQNLE  240 (317)
T ss_dssp             CCCEEECCCCCTTCCEEECCSSCCCE------------ECGGGGGGTTCSEEECTTSCC---CEECT----TCCCCTTCC
T ss_pred             cCcccccccccccCCEEECCCCcCCc------------chhhhcccCcccEEECcCCcc---cchhh----HhhcCCCCC
Confidence            333221 1124445555444332110            111256677888888887766   43322    344567788


Q ss_pred             eEEEEeccCCChHHHHHHHHhCCCCcceEEe
Q 017981          329 RLEVEGVGACGWLSLAHIFSRMPKLESIVFE  359 (363)
Q Consensus       329 ~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~  359 (363)
                      .|+++++.. ....+...+..+|+|+.|.+.
T Consensus       241 ~L~l~~N~~-~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          241 HFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             EEECTTCCC-BHHHHHHHHHTCHHHHHHHHH
T ss_pred             EEEccCCCc-cCcCHHHHHhccccceEEECC
Confidence            888887754 334677777888888777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.18  E-value=9.7e-13  Score=123.17  Aligned_cols=67  Identities=22%  Similarity=0.322  Sum_probs=42.4

Q ss_pred             HHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          289 DMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       289 ~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      ..+..+++|+.|+++++.+   ..+..  . .+..+++|+.|+++++.-.+.  ....+..+++|+.|+++.|++
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHI---RALGD--Q-SFLGLPNLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCC---CEECT--T-TTTTCTTCCEEECCSSCCSCC--CTTTTTTCTTCCEEECCSSCB
T ss_pred             hHhcCcccCCEEECCCCcc---cccCh--h-hccccccccEEECCCCccccC--CHhHhccCCcccEEEccCCCc
Confidence            3456677788888877765   33211  1 344677888888887653221  122457788899888887754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.18  E-value=9.5e-12  Score=116.41  Aligned_cols=199  Identities=14%  Similarity=0.065  Sum_probs=97.1

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      ++++.|+++.+....  +|  +..+++|++|++++|.+... ....+++|++|+|.++.+++-.    +..+++|++|.+
T Consensus        64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEEC
Confidence            355555554443211  22  34455555555555555433 2445555555555555443321    445555555555


Q ss_pred             eeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeeecee
Q 017981          196 KGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECI  274 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~  274 (363)
                      .+|...+. .   +. .++|+.|++.+|.....    . -...+++|++|+++++......+..+++|+.+.+..+.-..
T Consensus       135 ~~N~l~~l-~---l~~l~~L~~L~l~~n~~~~~----~-~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          135 ARNTLTEI-D---VSHNTQLTELDCHLNKKITK----L-DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             TTSCCSCC-C---CTTCTTCCEEECTTCSCCCC----C-CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccee-c---cccCCcCCEEECCCCCcccc----c-ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCe
Confidence            55544332 1   21 25555555555532211    0 01234566666666665555455556666666554332210


Q ss_pred             ccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCc
Q 017981          275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLE  354 (363)
Q Consensus       275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~  354 (363)
                                  .  -+..+++|+.|+++.+.+   ..+      ++..+++|+.|+++.+.-...   .  +..+++|+
T Consensus       206 ------------~--~l~~l~~L~~L~Ls~N~l---~~i------p~~~l~~L~~L~l~~N~l~~~---~--~~~l~~L~  257 (457)
T 3bz5_A          206 ------------L--DLNQNIQLTFLDCSSNKL---TEI------DVTPLTQLTYFDCSVNPLTEL---D--VSTLSKLT  257 (457)
T ss_dssp             ------------C--CCTTCTTCSEEECCSSCC---SCC------CCTTCTTCSEEECCSSCCSCC---C--CTTCTTCC
T ss_pred             ------------e--ccccCCCCCEEECcCCcc---ccc------CccccCCCCEEEeeCCcCCCc---C--HHHCCCCC
Confidence                        0  145566777777766655   221      233556677777766543221   1  34566666


Q ss_pred             ceEEee
Q 017981          355 SIVFEE  360 (363)
Q Consensus       355 ~L~l~~  360 (363)
                      .|++..
T Consensus       258 ~L~l~~  263 (457)
T 3bz5_A          258 TLHCIQ  263 (457)
T ss_dssp             EEECTT
T ss_pred             EEeccC
Confidence            555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.16  E-value=5.2e-13  Score=129.67  Aligned_cols=81  Identities=22%  Similarity=0.219  Sum_probs=36.3

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      ++++|++..+..  ..+|..+..+++|++|++++|.+...  ..+..+++|++|++.++.+........+..+++|++|.
T Consensus       279 ~L~~L~l~~n~l--~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          279 GLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             TCSEEECTTSCC--SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             CCCEEeccCCcc--CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            444444443332  13444444455555555555544432  12334555555555555433221112234455555555


Q ss_pred             EeeeE
Q 017981          195 IKGYI  199 (363)
Q Consensus       195 L~~c~  199 (363)
                      +.+|.
T Consensus       357 l~~n~  361 (606)
T 3t6q_A          357 LSHDD  361 (606)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            55544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.16  E-value=4.2e-13  Score=125.18  Aligned_cols=206  Identities=17%  Similarity=0.194  Sum_probs=103.6

Q ss_pred             CCceEEEEEcCCCccccCC-cccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      ++++.|+++.+...  .++ ..+..+++|++|+|++|.+...+  .+..+++|++|+|.++.+..-. ...+..+++|++
T Consensus        88 ~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~  164 (440)
T 3zyj_A           88 RHLEILQLSRNHIR--TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRR  164 (440)
T ss_dssp             SSCCEEECCSSCCC--EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcCC--ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCcccCE
Confidence            35666666554431  222 23444666666666666655432  2445666666666666554321 123456666776


Q ss_pred             EEEeeeEeCCCceeEEE----ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEE
Q 017981          193 LSIKGYIYGTDSVTLNI----PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKA  265 (363)
Q Consensus       193 L~L~~c~~~~~~~~l~i----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~  265 (363)
                      |.+.+|..  . ..+..    ..++|+.|++.+|.....    . -....++|++|+++++.....   .+.++++|+.+
T Consensus       165 L~l~~~~~--l-~~i~~~~~~~l~~L~~L~L~~n~l~~~----~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  236 (440)
T 3zyj_A          165 LDLGELKR--L-SYISEGAFEGLSNLRYLNLAMCNLREI----P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL  236 (440)
T ss_dssp             EECCCCTT--C-CEECTTTTTTCSSCCEEECTTSCCSSC----C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             eCCCCCCC--c-ceeCcchhhcccccCeecCCCCcCccc----c-ccCCCcccCEEECCCCccCccChhhhccCccCCEE
Confidence            66666431  1 11110    125666777766654322    1 123456677777776654433   24455666666


Q ss_pred             EEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC---CChHH
Q 017981          266 VVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA---CGWLS  342 (363)
Q Consensus       266 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~  342 (363)
                      .+..+.-...           ....+..+++|+.|+++++.+   ..+..  . .+..+++|+.|++.+++-   +...+
T Consensus       237 ~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l---~~~~~--~-~~~~l~~L~~L~L~~Np~~CdC~l~~  299 (440)
T 3zyj_A          237 WMIQSQIQVI-----------ERNAFDNLQSLVEINLAHNNL---TLLPH--D-LFTPLHHLERIHLHHNPWNCNCDILW  299 (440)
T ss_dssp             ECTTCCCCEE-----------CTTSSTTCTTCCEEECTTSCC---CCCCT--T-TTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred             ECCCCceeEE-----------ChhhhcCCCCCCEEECCCCCC---CccCh--h-HhccccCCCEEEcCCCCccCCCCchH
Confidence            5543321110           122345566777777776655   32221  1 233456677777766542   23344


Q ss_pred             HHHHHHh
Q 017981          343 LAHIFSR  349 (363)
Q Consensus       343 l~~ll~~  349 (363)
                      +...++.
T Consensus       300 l~~~~~~  306 (440)
T 3zyj_A          300 LSWWIKD  306 (440)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            4444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.15  E-value=1.2e-12  Score=123.49  Aligned_cols=219  Identities=14%  Similarity=0.099  Sum_probs=108.8

Q ss_pred             CceEEEEEcCCCccccCC-cccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          117 NVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      +++.|+++.+...  .++ ..+..+++|++|+|++|.+...+++..+++|++|+|+++.+++-      ...|+|++|.+
T Consensus        35 ~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l------~~~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCC--CCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEE------EECTTCCEEEC
T ss_pred             CccEEEeeCCcCC--CCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCC------CCCCCcCEEEC
Confidence            6777777665431  233 34556777777777777766444466777777777777766542      12366666666


Q ss_pred             eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceee----ecCCCceEEEEeeee
Q 017981          196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVV----HELHSLTKAVVDYGI  271 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~L~~~~l~~~~  271 (363)
                      .+|.+.+. .  ....++|+.|++.+|.......   .....+++|++|+++++.......    ..+++|+.+++..+.
T Consensus       107 ~~N~l~~~-~--~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          107 ANNNISRV-S--CSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             CSSCCCCE-E--ECCCSSCEEEECCSSCCCSGGG---BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             cCCcCCCC-C--ccccCCCCEEECCCCCCCCCCc---hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            66654332 1  1122556666666554432100   000123455555555444332211    133444444443222


Q ss_pred             ceecc-----------CCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCCh
Q 017981          272 ECILD-----------YDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGW  340 (363)
Q Consensus       272 ~~~~~-----------~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  340 (363)
                      -....           .+..+.+.. +..-+..+++|+.|+++++.+   ..+..    .+..+++|+.|++.++.. ..
T Consensus       181 l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l---~~lp~----~l~~l~~L~~L~l~~N~l-~c  251 (487)
T 3oja_A          181 IYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL---VLIEK----ALRFSQNLEHFDLRGNGF-HC  251 (487)
T ss_dssp             CCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC---CEECT----TCCCCTTCCEEECTTCCB-CH
T ss_pred             cccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcC---cccch----hhccCCCCCEEEcCCCCC-cC
Confidence            10000           000000000 111145666777777777655   32221    334556677777776654 33


Q ss_pred             HHHHHHHHhCCCCcceEE
Q 017981          341 LSLAHIFSRMPKLESIVF  358 (363)
Q Consensus       341 ~~l~~ll~~~p~L~~L~l  358 (363)
                      ..++..+..+|.|+.+.+
T Consensus       252 ~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          252 GTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             cchHHHHHhCCCCcEEec
Confidence            456666667776666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.15  E-value=5.4e-12  Score=112.41  Aligned_cols=189  Identities=10%  Similarity=0.095  Sum_probs=125.2

Q ss_pred             cCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981          139 TCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR  216 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~  216 (363)
                      .+++|++|+|++|.+...+  .+..+++|++|+|.++.+++.. .  +..+++|++|.+.+|.+.+.    . ..++|+.
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~l~~l----~-~~~~L~~  103 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYVQEL----L-VGPSIET  103 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSEEEEE----E-ECTTCCE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCccccc----c-CCCCcCE
Confidence            4789999999999888653  3568999999999999876542 1  77899999999999886443    1 3489999


Q ss_pred             EEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc
Q 017981          217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD  293 (363)
Q Consensus       217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  293 (363)
                      |.+.+|.....      .....++|++|.++++.....   .+..+++|+.+.+..+.-....          ...+...
T Consensus       104 L~l~~n~l~~~------~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~~  167 (317)
T 3o53_A          104 LHAANNNISRV------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN----------FAELAAS  167 (317)
T ss_dssp             EECCSSCCSEE------EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE----------GGGGGGG
T ss_pred             EECCCCccCCc------CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc----------HHHHhhc
Confidence            99999976432      234478999999999876543   4567788998887654321100          1223346


Q ss_pred             cCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       294 l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      +++|+.|.++++.+   ..+.     ....+++|+.|+++.+.-..   +..-+..+++|+.|+++.++
T Consensus       168 l~~L~~L~L~~N~l---~~~~-----~~~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          168 SDTLEHLNLQYNFI---YDVK-----GQVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             TTTCCEEECTTSCC---CEEE-----CCCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSC
T ss_pred             cCcCCEEECCCCcC---cccc-----cccccccCCEEECCCCcCCc---chhhhcccCcccEEECcCCc
Confidence            67888888887766   3321     11234556666666553211   11113445555555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.14  E-value=1.4e-12  Score=115.55  Aligned_cols=220  Identities=15%  Similarity=0.085  Sum_probs=121.7

Q ss_pred             CCceEEEEEcCCCccccCCcc-cccCCcccEEEecccccccC----CCcccCcccceeeeeeEEEccchHHHHhccCCcc
Q 017981          116 RNVREIEISLNDDECIELPHC-IYTCKTLEVLKLDMNFFIKT----PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPAL  190 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  190 (363)
                      .++++|++..+..  ..+|.. +..+++|++|+|++|.+...    .....+++|++|+|.++.+..-  ..-+..+++|
T Consensus        28 ~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l--~~~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQL  103 (306)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE--EEEEETCTTC
T ss_pred             CCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC--hhhcCCCCCC
Confidence            4677777765543  245544 34577777777777765422    2233567777777777755432  1225567777


Q ss_pred             ceEEEeeeEeCCCcee--EEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc----eeeecCCCceE
Q 017981          191 EDLSIKGYIYGTDSVT--LNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL----YVVHELHSLTK  264 (363)
Q Consensus       191 e~L~L~~c~~~~~~~~--l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~  264 (363)
                      ++|.+.+|...+. ..  .....++|+.|++.+|........   ....+++|++|.++++....    ..+..+++|+.
T Consensus       104 ~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          104 EHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             CEEECTTSEEESS-TTTTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CEEECCCCccccc-ccchhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence            7777777664433 11  111236777777777654321000   11235677777777664432    23456677777


Q ss_pred             EEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHH
Q 017981          265 AVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLA  344 (363)
Q Consensus       265 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~  344 (363)
                      +++..+.-..           .....+..+++|+.|.++++.+   ..+..  . .+..+++|+.|+++++.-.+.  ..
T Consensus       180 L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~~~--~~  240 (306)
T 2z66_A          180 LDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNF---FSLDT--F-PYKCLNSLQVLDYSLNHIMTS--KK  240 (306)
T ss_dssp             EECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCC---SBCCS--G-GGTTCTTCCEEECTTSCCCBC--SS
T ss_pred             EECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCcc---CccCh--h-hccCcccCCEeECCCCCCccc--CH
Confidence            7665443211           0123456677888888877765   32221  0 233566788888877643111  11


Q ss_pred             HHHHhCC-CCcceEEeeec
Q 017981          345 HIFSRMP-KLESIVFEEVR  362 (363)
Q Consensus       345 ~ll~~~p-~L~~L~l~~~~  362 (363)
                      ..+..+| +|+.|+++.|+
T Consensus       241 ~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          241 QELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             SSCCCCCTTCCEEECTTCC
T ss_pred             HHHHhhhccCCEEEccCCC
Confidence            1234454 78888887765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.14  E-value=7.8e-12  Score=117.96  Aligned_cols=189  Identities=10%  Similarity=0.105  Sum_probs=128.0

Q ss_pred             cCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981          139 TCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR  216 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~  216 (363)
                      .+++|++|+|++|.+...+  .+..+++|++|+|+++.+++.. .  +..+++|++|+|.+|.+.+.     ...++|+.
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYVQEL-----LVGPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCcCCCC-----CCCCCcCE
Confidence            4569999999999988653  3568999999999999876542 1  78899999999999986443     13489999


Q ss_pred             EEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc
Q 017981          217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD  293 (363)
Q Consensus       217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  293 (363)
                      |++.+|.....      .....|+|++|.++++.....   .++.+++|+.+++..+.-....          ...+...
T Consensus       104 L~L~~N~l~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------~~~l~~~  167 (487)
T 3oja_A          104 LHAANNNISRV------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN----------FAELAAS  167 (487)
T ss_dssp             EECCSSCCCCE------EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE----------GGGGGGG
T ss_pred             EECcCCcCCCC------CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC----------hHHHhhh
Confidence            99999976532      223468999999999876643   4577899999888655321100          1223346


Q ss_pred             cCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       294 l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      +++|+.|+++++.+   ..+.     ....+++|+.|+++++.-..   +..-+..+|+|+.|+++.|+
T Consensus       168 l~~L~~L~Ls~N~l---~~~~-----~~~~l~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          168 SDTLEHLNLQYNFI---YDVK-----GQVVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             TTTCCEEECTTSCC---CEEE-----CCCCCTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSC
T ss_pred             CCcccEEecCCCcc---cccc-----ccccCCCCCEEECCCCCCCC---CCHhHcCCCCccEEEecCCc
Confidence            78888888888766   3321     12235566677666654311   11114455666666665544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.14  E-value=7e-13  Score=124.33  Aligned_cols=84  Identities=10%  Similarity=0.062  Sum_probs=36.2

Q ss_pred             CCceEEEEEcCCCccc---cCCcccccCCcccEEEecccccccC-C-C-cccCc----ccceeeeeeEEEccc---hHHH
Q 017981          116 RNVREIEISLNDDECI---ELPHCIYTCKTLEVLKLDMNFFIKT-P-P-TIFFP----SAKILHVILNTIDNN---FSDW  182 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~~~~~-~-~-~~~~~----~L~~L~L~~~~~~~~---~l~~  182 (363)
                      ++++.|+++.+.....   .++..+..+++|++|+|++|.+.+. + . ...++    +|++|+|.+|.+++.   .+..
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  107 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  107 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence            3555555554432211   2333344455555555555544321 0 0 01122    455555555554433   2233


Q ss_pred             HhccCCccceEEEeeeE
Q 017981          183 LFSKCPALEDLSIKGYI  199 (363)
Q Consensus       183 ll~~cp~Le~L~L~~c~  199 (363)
                      .+..+++|++|.+.+|.
T Consensus       108 ~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             HTTSCTTCCEEECCSSB
T ss_pred             HHccCCceeEEECCCCc
Confidence            34455555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.13  E-value=4.8e-12  Score=121.84  Aligned_cols=224  Identities=17%  Similarity=0.125  Sum_probs=112.3

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCC---------------------cccCcccceeeeeeEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP---------------------TIFFPSAKILHVILNT  174 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~---------------------~~~~~~L~~L~L~~~~  174 (363)
                      .+++.+++..+..  ..+|..+..+ +|++|++.+|.+...+.                     ...+++|++|++.++.
T Consensus       282 ~~L~~L~l~~~~l--~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          282 TNVSSFSLVSVTI--ERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG  358 (570)
T ss_dssp             TTCSEEEEESCEE--CSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred             CcccEEEecCccc--hhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence            5788888866542  2455555555 66666666665553222                     2344455555555444


Q ss_pred             Eccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc
Q 017981          175 IDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL  253 (363)
Q Consensus       175 ~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~  253 (363)
                      +... .....+.++++|++|.+.+|...+. ..-....++|+.|++.+|.......  ......+++|++|+++++....
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTT--SCTTTTCTTCCEEECTTSCCEE
T ss_pred             cCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccc--hhhhhcCCCCCEEeCcCCcccc
Confidence            3322 1112234455555555555543222 1111123555555555543321100  0011234556666655553321


Q ss_pred             ---eeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceE
Q 017981          254 ---YVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRL  330 (363)
Q Consensus       254 ---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L  330 (363)
                         ..+..+++|+.+.+..+....          ..+...+..+++|+.|+++++.+   ..+.  .. .+..+++|+.|
T Consensus       436 ~~~~~~~~l~~L~~L~l~~n~l~~----------~~~p~~~~~l~~L~~L~l~~n~l---~~~~--~~-~~~~l~~L~~L  499 (570)
T 2z63_A          436 AFNGIFNGLSSLEVLKMAGNSFQE----------NFLPDIFTELRNLTFLDLSQCQL---EQLS--PT-AFNSLSSLQVL  499 (570)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGG----------GEECSCCTTCTTCCEEECTTSCC---CEEC--TT-TTTTCTTCCEE
T ss_pred             cchhhhhcCCcCcEEECcCCcCcc----------ccchhhhhcccCCCEEECCCCcc---ccCC--hh-hhhcccCCCEE
Confidence               123445566665554332100          00223456677788888877765   3221  11 34466788888


Q ss_pred             EEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          331 EVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       331 ~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      ++.++.-.+.  ....+..+|+|+.|+++.+++
T Consensus       500 ~l~~n~l~~~--~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          500 NMASNQLKSV--PDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             ECCSSCCSCC--CTTTTTTCTTCCEEECCSSCB
T ss_pred             eCCCCcCCCC--CHHHhhcccCCcEEEecCCcc
Confidence            8887743221  123457788899888887753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.12  E-value=9.2e-12  Score=111.61  Aligned_cols=133  Identities=15%  Similarity=0.123  Sum_probs=81.1

Q ss_pred             CCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHH
Q 017981          212 LTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVV  288 (363)
Q Consensus       212 ~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~  288 (363)
                      ++|+.|++.+|.......   .....+++|++|+++++.....   .+..+++|+.+++..+.-..            +.
T Consensus       193 ~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------lp  257 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIEL---EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR------------VP  257 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCT---TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB------------CC
T ss_pred             CCCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee------------cC
Confidence            567777777765432210   1113457888888887765433   35677888888776553211            22


Q ss_pred             HHhhccCcceEEEEeCCcccccccccc-ccCCC--CCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          289 DMLRDIKNIKSLSLSSGTMFALDRLDY-ANDHS--FPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       289 ~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      ..+..+++|+.|+++++.+   ..+.. .+...  ...+.+|+.|++.+++...+......+.++++|+.++++.++
T Consensus       258 ~~l~~l~~L~~L~l~~N~l---~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          258 AGLPDLKLLQVVYLHTNNI---TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TTGGGCTTCCEEECCSSCC---CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhhhcCccCCEEECCCCCC---CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            3367889999999998877   44332 11101  112567899999988653333444567889999999998875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.12  E-value=1.1e-11  Score=119.95  Aligned_cols=217  Identities=13%  Similarity=0.114  Sum_probs=115.6

Q ss_pred             CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      .+++.|++..+..  ..+++ .+..+++|++|+|++|.+...+.  +..+++|++|+|.++.+.+-. ...+..+++|++
T Consensus        99 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~  175 (597)
T 3oja_B           99 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQN  175 (597)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcE
Confidence            4777777766553  23333 34567788888888777765433  346777888888777665431 223566777777


Q ss_pred             EEEeeeEeCCCc-------eeE--------E-EecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-e
Q 017981          193 LSIKGYIYGTDS-------VTL--------N-IPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-V  255 (363)
Q Consensus       193 L~L~~c~~~~~~-------~~l--------~-i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~  255 (363)
                      |.+.+|.+.+..       ..+        . ...++|+.|++.+|.....      .....++|+.|.++++..... .
T Consensus       176 L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~------~~~~~~~L~~L~L~~n~l~~~~~  249 (597)
T 3oja_B          176 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV------RGPVNVELTILKLQHNNLTDTAW  249 (597)
T ss_dssp             EECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE------ECSCCSCCCEEECCSSCCCCCGG
T ss_pred             EECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccc------ccccCCCCCEEECCCCCCCCChh
Confidence            777776543320       000        0 0123444555544433211      001124566666666544322 2


Q ss_pred             eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981          256 VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV  335 (363)
Q Consensus       256 ~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~  335 (363)
                      +..+++|+.+.+..+....           .....+..+++|+.|.++++.+   ..+..    ....+++|+.|+++.+
T Consensus       250 l~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l---~~l~~----~~~~l~~L~~L~Ls~N  311 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEK-----------IMYHPFVKMQRLERLYISNNRL---VALNL----YGQPIPTLKVLDLSHN  311 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCE-----------EESGGGTTCSSCCEEECTTSCC---CEEEC----SSSCCTTCCEEECCSS
T ss_pred             hccCCCCCEEECCCCccCC-----------CCHHHhcCccCCCEEECCCCCC---CCCCc----ccccCCCCcEEECCCC
Confidence            4566677776665443211           0123355667777777777655   33221    2234566777777766


Q ss_pred             cCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          336 GACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       336 ~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      .-..   ++.-+..+|+|+.|+++.++
T Consensus       312 ~l~~---i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          312 HLLH---VERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             CCCC---CGGGHHHHTTCSEEECCSSC
T ss_pred             CCCc---cCcccccCCCCCEEECCCCC
Confidence            4322   22223455666666665554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.12  E-value=2.3e-12  Score=115.39  Aligned_cols=219  Identities=15%  Similarity=0.065  Sum_probs=119.6

Q ss_pred             CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      +.++.|+++.+..  ..++. .+..+++|++|+|++|.+... + .+..+++|++|+|.++.++.-.    ...+++|++
T Consensus        52 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQE  125 (330)
T ss_dssp             TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC----SSCCTTCCE
T ss_pred             CCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC----hhhcccccE
Confidence            4677787766553  23443 456788999999998877654 2 4557888999999888765321    112378999


Q ss_pred             EEEeeeEeCCCceeE-EEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeee
Q 017981          193 LSIKGYIYGTDSVTL-NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGI  271 (363)
Q Consensus       193 L~L~~c~~~~~~~~l-~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~  271 (363)
                      |.+.+|...+. ..- -...++|+.|++.+|........ ......+++|++|.++++....+...-.++|+.+.+..+.
T Consensus       126 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~  203 (330)
T 1xku_A          126 LRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK  203 (330)
T ss_dssp             EECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBC-TTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSC
T ss_pred             EECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcC-hhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCc
Confidence            99988765433 111 11237788888877755321000 0011235677777777665443332223556666554332


Q ss_pred             ceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCC
Q 017981          272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMP  351 (363)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p  351 (363)
                      -..           .....+..+++|+.|.++++.+   ..+..  . .+..+++|+.|+++.+.-.   .++.-+..++
T Consensus       204 l~~-----------~~~~~~~~l~~L~~L~Ls~n~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~  263 (330)
T 1xku_A          204 ITK-----------VDAASLKGLNNLAKLGLSFNSI---SAVDN--G-SLANTPHLRELHLNNNKLV---KVPGGLADHK  263 (330)
T ss_dssp             CCE-----------ECTGGGTTCTTCCEEECCSSCC---CEECT--T-TGGGSTTCCEEECCSSCCS---SCCTTTTTCS
T ss_pred             CCc-----------cCHHHhcCCCCCCEEECCCCcC---ceeCh--h-hccCCCCCCEEECCCCcCc---cCChhhccCC
Confidence            110           0122345566666666666554   22211  0 1224455666666655332   1222245566


Q ss_pred             CCcceEEeeec
Q 017981          352 KLESIVFEEVR  362 (363)
Q Consensus       352 ~L~~L~l~~~~  362 (363)
                      +|+.|+++.++
T Consensus       264 ~L~~L~l~~N~  274 (330)
T 1xku_A          264 YIQVVYLHNNN  274 (330)
T ss_dssp             SCCEEECCSSC
T ss_pred             CcCEEECCCCc
Confidence            66666665554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.12  E-value=1.7e-10  Score=110.55  Aligned_cols=227  Identities=14%  Similarity=0.123  Sum_probs=151.7

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      +.++.|+++.+... ...|..+..+++|++|+|++|.+...+  .+..+++|++|+|+++.+.+.. ...+.++++|++|
T Consensus        26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCcEE
Confidence            57899999876642 233456778999999999999887543  3668999999999999887652 3446889999999


Q ss_pred             EEeeeEeCCCcee-EEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEe
Q 017981          194 SIKGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVD  268 (363)
Q Consensus       194 ~L~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~  268 (363)
                      .+.+|...+. .. -.+ ..++|+.|++.+|........  .....+++|++|+++++.....   .+..+++|+.+.+.
T Consensus       104 ~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          104 NLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             ECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             ECCCCccccc-chhhhhhccCCccEEECCCCccccccCH--hhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence            9999986543 11 112 248999999999863221000  0113468999999999876543   24567778888776


Q ss_pred             eeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCCh---HHHHH
Q 017981          269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGW---LSLAH  345 (363)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~l~~  345 (363)
                      ....        ..   ....++..+++++.|.++++.+   ..+..........+.+|+.|++..+.. ..   ..+..
T Consensus       181 ~n~~--------~~---~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~l~~  245 (549)
T 2z81_A          181 LSES--------AF---LLEIFADILSSVRYLELRDTNL---ARFQFSPLPVDEVSSPMKKLAFRGSVL-TDESFNELLK  245 (549)
T ss_dssp             CSBS--------TT---HHHHHHHSTTTBSEEEEESCBC---TTCCCCCCSSCCCCCCCCEEEEESCEE-EHHHHHHHHG
T ss_pred             cCcc--------cc---cchhhHhhcccccEEEccCCcc---ccccccccchhhhhhcccceecccccc-chhHHHHHHH
Confidence            5442        11   1233456789999999999876   332110000122467899999988643 32   23444


Q ss_pred             HHHhCCCCcceEEeeec
Q 017981          346 IFSRMPKLESIVFEEVR  362 (363)
Q Consensus       346 ll~~~p~L~~L~l~~~~  362 (363)
                      .+..+++|+.|+++.++
T Consensus       246 ~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          246 LLRYILELSEVEFDDCT  262 (549)
T ss_dssp             GGGGCTTCCEEEEESCE
T ss_pred             Hhhhhcccccccccccc
Confidence            55677888888776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.12  E-value=8.4e-12  Score=109.37  Aligned_cols=129  Identities=16%  Similarity=0.077  Sum_probs=59.1

Q ss_pred             CCceEEEEEcCCCccccCC-cccccCCcccEEEecccccccC--CCcccCcccceeeeeeEE-EccchHHHHhccCCccc
Q 017981          116 RNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNT-IDNNFSDWLFSKCPALE  191 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le  191 (363)
                      +++++|+++.+...  .++ ..+..+++|++|+|+++.+...  ..+..+++|++|+|.++. +..-. ...+..+++|+
T Consensus        32 ~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~  108 (285)
T 1ozn_A           32 AASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH  108 (285)
T ss_dssp             TTCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred             CCceEEEeeCCcCC--ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence            35666665544321  222 2344466666666666655432  223455666666666654 32211 22244566666


Q ss_pred             eEEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981          192 DLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP  251 (363)
Q Consensus       192 ~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  251 (363)
                      +|.+.+|...+. ..-.+ ..++|+.|++.+|........   ....+++|++|+++++..
T Consensus       109 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A          109 TLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             EEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCEE-CHhHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCCCcc
Confidence            666666553322 10001 125566666655543321000   001245555555555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.12  E-value=1.8e-12  Score=125.89  Aligned_cols=127  Identities=15%  Similarity=0.044  Sum_probs=53.0

Q ss_pred             cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceE
Q 017981          139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRL  217 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L  217 (363)
                      .+++|++|++++|..........+++|++|+|.++.+.+. .+...+..+++|++|.+.+|...+. ...-...++|+.|
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L  404 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHL  404 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEE
T ss_pred             CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCee
Confidence            4444444444444222222333455555555555544432 1123345556666666665542221 1000012556666


Q ss_pred             EEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEe
Q 017981          218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVD  268 (363)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~  268 (363)
                      ++.+|.......  ......+++|++|+++++.....   .+..+++|+.+.+.
T Consensus       405 ~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  456 (606)
T 3vq2_A          405 DFQHSTLKRVTE--FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA  456 (606)
T ss_dssp             ECTTSEEESTTT--TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             ECCCCccCCccC--hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence            655554322100  00011345555555555433211   13444555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.12  E-value=1.2e-11  Score=119.70  Aligned_cols=223  Identities=15%  Similarity=0.140  Sum_probs=143.4

Q ss_pred             hCCceEEEEEcCCCccccCC-cccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccc
Q 017981          115 MRNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALE  191 (363)
Q Consensus       115 ~~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  191 (363)
                      .++++.|++..+...  .++ ..+..+++|++|+|++|.+...+  .+..+++|++|+|.++.++.- ...++..+++|+
T Consensus        74 l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~  150 (597)
T 3oja_B           74 FRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLT  150 (597)
T ss_dssp             CCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred             CCCCcEEECCCCCCC--CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCC
Confidence            368999999776542  333 46677999999999999888653  246899999999999987643 234467899999


Q ss_pred             eEEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCc-------------eEEEEeccCcceEEEeecCCCceeee
Q 017981          192 DLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITK-------------YKVIIRAPNLEQLYIRDHGPGLYVVH  257 (363)
Q Consensus       192 ~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~p~L~~L~l~~~~~~~~~~~  257 (363)
                      +|.|.+|.+.+. ..-.+ ..++|+.|++.+|.........             ..-....++|+.|.++++....+...
T Consensus       151 ~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          151 TLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             EEECCSSCCCBC-CTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred             EEEeeCCcCCCC-ChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence            999999875443 11112 2478999999988654321000             00011223445555554444333333


Q ss_pred             cCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981          258 ELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA  337 (363)
Q Consensus       258 ~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  337 (363)
                      ..++|+.+.+..+...             ....+..+++|+.|+++++.+   ..+..  . .+..+++|+.|+++++.-
T Consensus       230 ~~~~L~~L~L~~n~l~-------------~~~~l~~l~~L~~L~Ls~N~l---~~~~~--~-~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          230 VNVELTILKLQHNNLT-------------DTAWLLNYPGLVEVDLSYNEL---EKIMY--H-PFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             CCSCCCEEECCSSCCC-------------CCGGGGGCTTCSEEECCSSCC---CEEES--G-GGTTCSSCCEEECTTSCC
T ss_pred             cCCCCCEEECCCCCCC-------------CChhhccCCCCCEEECCCCcc---CCCCH--H-HhcCccCCCEEECCCCCC
Confidence            3345665555433321             024577889999999999876   33221  1 344678899999988754


Q ss_pred             CChHHHHHHHHhCCCCcceEEeeecC
Q 017981          338 CGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       338 ~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      ..   +......+|+|+.|++..+++
T Consensus       291 ~~---l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          291 VA---LNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             CE---EECSSSCCTTCCEEECCSSCC
T ss_pred             CC---CCcccccCCCCcEEECCCCCC
Confidence            22   333346689999999988764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.11  E-value=3.1e-11  Score=107.01  Aligned_cols=166  Identities=15%  Similarity=0.077  Sum_probs=101.0

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      ++++.|+++.+..  ..++. +..+++|++|+|++|.+...+....+++|++|+|.++.+.+-  .. +..+++|++|.+
T Consensus        63 ~~L~~L~L~~n~i--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQI--TDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcC--CCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEEC
Confidence            5777777766543  23333 566777777777777776555566777777777777766543  22 567777777777


Q ss_pred             eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee-eecCCCceEEEEeeeecee
Q 017981          196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV-VHELHSLTKAVVDYGIECI  274 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~~~l~~~~~~~  274 (363)
                      .+|...+. .. -...++|+.|++.+|......    . ...+++|+.|+++++...... +..+++|+.+.+..+.-..
T Consensus       137 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          137 DLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLT----P-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             CSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB
T ss_pred             CCCccCcC-cc-ccCCCCccEEEccCCcCCCCh----h-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCc
Confidence            77765554 22 112367777777777554321    1 234577777777776554322 5566777777665443211


Q ss_pred             ccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981          275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  307 (363)
                                  .. .+..+++|+.|.++++.+
T Consensus       210 ------------~~-~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          210 ------------VS-PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             ------------CG-GGTTCTTCCEEEEEEEEE
T ss_pred             ------------cc-cccCCCCCCEEEccCCee
Confidence                        01 156667777777776654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.09  E-value=1.6e-11  Score=114.85  Aligned_cols=203  Identities=11%  Similarity=0.016  Sum_probs=155.8

Q ss_pred             hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      .++++.|+++.+...  .+| .+..+++|++|+|++|.+...+ ...+++|++|+|+++.+++-.    +..+++|++|.
T Consensus        41 l~~L~~L~Ls~n~l~--~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSIT--DMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCC--CCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcc--cCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee----cCCCCcCCEEE
Confidence            368999999876543  344 5778999999999999988654 778999999999999886643    67899999999


Q ss_pred             EeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec-CCCceeeecCCCceEEEEeeeec
Q 017981          195 IKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH-GPGLYVVHELHSLTKAVVDYGIE  272 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~L~~~~l~~~~~  272 (363)
                      +.+|...+. .   +. .++|+.|.+.+|.....     . ...+++|++|.++++ ......+..+++|+.+++..+.-
T Consensus       113 L~~N~l~~l-~---~~~l~~L~~L~l~~N~l~~l-----~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          113 CDTNKLTKL-D---VSQNPLLTYLNCARNTLTEI-----D-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             CCSSCCSCC-C---CTTCTTCCEEECTTSCCSCC-----C-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCCcCCee-c---CCCCCcCCEEECCCCcccee-----c-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcc
Confidence            999986665 2   33 48999999999876532     1 245789999999988 44455678889999998875542


Q ss_pred             eeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCC
Q 017981          273 CILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPK  352 (363)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~  352 (363)
                      ..            +.  +..+++++.|.++.+.+   ..+      .+..+++|+.|+++.+.-..   ++  +..+++
T Consensus       183 ~~------------l~--l~~l~~L~~L~l~~N~l---~~~------~l~~l~~L~~L~Ls~N~l~~---ip--~~~l~~  234 (457)
T 3bz5_A          183 TE------------LD--VSQNKLLNRLNCDTNNI---TKL------DLNQNIQLTFLDCSSNKLTE---ID--VTPLTQ  234 (457)
T ss_dssp             CC------------CC--CTTCTTCCEEECCSSCC---SCC------CCTTCTTCSEEECCSSCCSC---CC--CTTCTT
T ss_pred             ce------------ec--cccCCCCCEEECcCCcC---Cee------ccccCCCCCEEECcCCcccc---cC--ccccCC
Confidence            11            11  67789999999999877   332      24567889999999886533   33  678999


Q ss_pred             CcceEEeeecC
Q 017981          353 LESIVFEEVRM  363 (363)
Q Consensus       353 L~~L~l~~~~~  363 (363)
                      |+.|+++.+++
T Consensus       235 L~~L~l~~N~l  245 (457)
T 3bz5_A          235 LTYFDCSVNPL  245 (457)
T ss_dssp             CSEEECCSSCC
T ss_pred             CCEEEeeCCcC
Confidence            99999988764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.09  E-value=3.8e-10  Score=108.49  Aligned_cols=104  Identities=19%  Similarity=0.108  Sum_probs=61.1

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .+++.|+++.+... .-.|..+..+++|++|+|++|.+...+.. .+++|++|+|+++.+.+-.+...+.++++|++|.+
T Consensus        76 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L  153 (562)
T 3a79_B           76 SELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL  153 (562)
T ss_dssp             TTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred             CCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEec
Confidence            46777777655431 12244455677777777777776644443 67777777777777654222234566777777777


Q ss_pred             eeeEeCCCceeEEEecCCc--ceEEEEecCC
Q 017981          196 KGYIYGTDSVTLNIPSLTL--KRLRLELEAP  224 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L--~~L~l~~~~~  224 (363)
                      .+|..... ..-  ..++|  +.|.+.+|..
T Consensus       154 ~~n~l~~~-~~~--~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          154 SAAKFRQL-DLL--PVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             ECSBCCTT-TTG--GGTTSCEEEEEEEESSC
T ss_pred             CCCccccC-chh--hhhhceeeEEEeecccc
Confidence            77664322 110  11334  6666666644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.09  E-value=1.4e-11  Score=115.35  Aligned_cols=107  Identities=14%  Similarity=0.167  Sum_probs=56.3

Q ss_pred             CCceEEEEEcCCCccccC-CcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchH-HHHhccCCccc
Q 017981          116 RNVREIEISLNDDECIEL-PHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFS-DWLFSKCPALE  191 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l-~~ll~~cp~Le  191 (363)
                      .+++.|++..+... ..+ +..+..+++|++|+|++|.+...  ..+..+++|++|+|.++.+++... ...+..+++|+
T Consensus        54 ~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  132 (455)
T 3v47_A           54 QDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE  132 (455)
T ss_dssp             TTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred             ccccEEECcCCccc-ceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence            35666666544321 122 23344566677777766665432  234456667777776666554311 12355666677


Q ss_pred             eEEEeeeEeCCCceeE--EEecCCcceEEEEecCC
Q 017981          192 DLSIKGYIYGTDSVTL--NIPSLTLKRLRLELEAP  224 (363)
Q Consensus       192 ~L~L~~c~~~~~~~~l--~i~~~~L~~L~l~~~~~  224 (363)
                      +|.|.+|...+. ...  -...++|+.|++.+|..
T Consensus       133 ~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          133 MLVLRDNNIKKI-QPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             EEECCSSBCCSC-CCCGGGGGCTTCCEEECTTCCB
T ss_pred             EEECCCCccCcc-CcccccCCCCcccEEeCCCCcc
Confidence            777766654332 111  11236666666666643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.09  E-value=2.3e-12  Score=128.46  Aligned_cols=219  Identities=17%  Similarity=0.173  Sum_probs=140.3

Q ss_pred             CCceEEEEEcCCCccccCCc--ccccCCcccEEEecccccccC-CC--cccCcccceeeeeeEEEccchHH--HHhccCC
Q 017981          116 RNVREIEISLNDDECIELPH--CIYTCKTLEVLKLDMNFFIKT-PP--TIFFPSAKILHVILNTIDNNFSD--WLFSKCP  188 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~-~~--~~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp  188 (363)
                      ++++.|+++.+.. ...+|.  .+..+++|++|+|++|.+... +.  ...+++|++|+|+++.+.+....  ..+.+|+
T Consensus       100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            4778887765543 223455  667788888888888877643 21  25778888888888877665222  2367888


Q ss_pred             ccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEE
Q 017981          189 ALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKA  265 (363)
Q Consensus       189 ~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~  265 (363)
                      +|++|.+.+|...+. ... ...++|+.|++.+|.....   ... ...+++|++|+++++.....   .+..+++|+.+
T Consensus       179 ~L~~L~Ls~n~l~~~-~~~-~~l~~L~~L~Ls~n~l~~~---~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  252 (768)
T 3rgz_A          179 ELKHLAISGNKISGD-VDV-SRCVNLEFLDVSSNNFSTG---IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL  252 (768)
T ss_dssp             TCCEEECCSSEEESC-CBC-TTCTTCCEEECCSSCCCSC---CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred             CCCEEECCCCccccc-CCc-ccCCcCCEEECcCCcCCCC---Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence            888888888875443 221 2347888888888866432   111 34568888888888766532   35677888888


Q ss_pred             EEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCC-CCCCcceEEEEeccCCChHHHH
Q 017981          266 VVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFP-TFPFLNRLEVEGVGACGWLSLA  344 (363)
Q Consensus       266 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~l~  344 (363)
                      ++..+.....  . +.          ..+++|+.|.++.+.+   ..  .... .+. .+++|++|++..+.-..  .++
T Consensus       253 ~Ls~n~l~~~--~-~~----------~~l~~L~~L~L~~n~l---~~--~ip~-~~~~~~~~L~~L~Ls~n~l~~--~~p  311 (768)
T 3rgz_A          253 NISSNQFVGP--I-PP----------LPLKSLQYLSLAENKF---TG--EIPD-FLSGACDTLTGLDLSGNHFYG--AVP  311 (768)
T ss_dssp             ECCSSCCEES--C-CC----------CCCTTCCEEECCSSEE---EE--SCCC-CSCTTCTTCSEEECCSSEEEE--CCC
T ss_pred             ECCCCcccCc--c-Cc----------cccCCCCEEECcCCcc---CC--ccCH-HHHhhcCcCCEEECcCCcCCC--ccc
Confidence            7765542110  0 00          1577888888888755   21  1111 222 34789999998874311  133


Q ss_pred             HHHHhCCCCcceEEeeec
Q 017981          345 HIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       345 ~ll~~~p~L~~L~l~~~~  362 (363)
                      ..+.++++|++|++..++
T Consensus       312 ~~~~~l~~L~~L~L~~n~  329 (768)
T 3rgz_A          312 PFFGSCSLLESLALSSNN  329 (768)
T ss_dssp             GGGGGCTTCCEEECCSSE
T ss_pred             hHHhcCCCccEEECCCCc
Confidence            456889999999998765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.08  E-value=7.7e-12  Score=124.70  Aligned_cols=219  Identities=18%  Similarity=0.091  Sum_probs=140.4

Q ss_pred             CCceEEEEEcCCCccccCCccc-ccCCcccEEEecccccccCCC-----cccCcccceeeeeeEEEccc-hHHHHhccCC
Q 017981          116 RNVREIEISLNDDECIELPHCI-YTCKTLEVLKLDMNFFIKTPP-----TIFFPSAKILHVILNTIDNN-FSDWLFSKCP  188 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~-----~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp  188 (363)
                      .+++.|+++.+.. ....|..+ .++++|++|+|++|.+.....     ...+++|++|+|.++.+.+. .    ...++
T Consensus       126 ~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~  200 (768)
T 3rgz_A          126 SGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCV  200 (768)
T ss_dssp             TTCCEEECCSSEE-ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCT
T ss_pred             CCCCEEECcCCcc-CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCC
Confidence            5888888876543 22344433 568899999999888765322     45788999999999988765 3    26789


Q ss_pred             ccceEEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc-eeeecCCCceEEE
Q 017981          189 ALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL-YVVHELHSLTKAV  266 (363)
Q Consensus       189 ~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~L~~~~  266 (363)
                      +|++|++.+|...+....  +. .++|+.|++.+|.....   .......+++|++|+++++.... .....+++|+.++
T Consensus       201 ~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          201 NLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGD---FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSC---HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             cCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCc---ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            999999999876543122  33 48899999998875421   11112356889999998875532 2223678888888


Q ss_pred             EeeeeceeccCCCchhhHHHHHHHh-hccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHH
Q 017981          267 VDYGIECILDYDSPEDVAQAVVDML-RDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAH  345 (363)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~  345 (363)
                      +..+.....           +...+ ..+++|+.|+++++.+   .....  . .+..+++|++|++..+.... ..-..
T Consensus       276 L~~n~l~~~-----------ip~~~~~~~~~L~~L~Ls~n~l---~~~~p--~-~~~~l~~L~~L~L~~n~l~~-~ip~~  337 (768)
T 3rgz_A          276 LAENKFTGE-----------IPDFLSGACDTLTGLDLSGNHF---YGAVP--P-FFGSCSLLESLALSSNNFSG-ELPMD  337 (768)
T ss_dssp             CCSSEEEES-----------CCCCSCTTCTTCSEEECCSSEE---EECCC--G-GGGGCTTCCEEECCSSEEEE-ECCHH
T ss_pred             CcCCccCCc-----------cCHHHHhhcCcCCEEECcCCcC---CCccc--h-HHhcCCCccEEECCCCcccC-cCCHH
Confidence            765542110           11112 2348899999988765   32111  1 23456788888888764310 11123


Q ss_pred             HHHhCCCCcceEEeeec
Q 017981          346 IFSRMPKLESIVFEEVR  362 (363)
Q Consensus       346 ll~~~p~L~~L~l~~~~  362 (363)
                      .+..+++|+.|+++.++
T Consensus       338 ~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          338 TLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             HHTTCTTCCEEECCSSE
T ss_pred             HHhcCCCCCEEeCcCCc
Confidence            46788999999888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.07  E-value=1.2e-10  Score=110.96  Aligned_cols=66  Identities=12%  Similarity=0.124  Sum_probs=47.1

Q ss_pred             hccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          292 RDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       292 ~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      ..+++++.|+++++.+   ...  ... .+..+++|+.|+++.+.-.+...++..+..+++|+.|+++.+++
T Consensus       321 ~~l~~L~~L~Ls~n~l---~~~--~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l  386 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLL---TDT--VFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV  386 (520)
T ss_dssp             SSCCCCCEEECCSSCC---CTT--TTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred             hhCCcccEEEeECCcc---Chh--hhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence            4667788888877655   221  112 34567889999999887655556777788999999999987764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.07  E-value=4.2e-12  Score=116.31  Aligned_cols=222  Identities=12%  Similarity=0.064  Sum_probs=145.8

Q ss_pred             ccCCcccccCCcccEEEecccccccC------CCcccCcccceeeeeeEEEc---cc------hHHHHhccCCccceEEE
Q 017981          131 IELPHCIYTCKTLEVLKLDMNFFIKT------PPTIFFPSAKILHVILNTID---NN------FSDWLFSKCPALEDLSI  195 (363)
Q Consensus       131 ~~l~~~~~~~~~L~~L~L~~~~~~~~------~~~~~~~~L~~L~L~~~~~~---~~------~l~~ll~~cp~Le~L~L  195 (363)
                      ..++..+..+++|++|+|++|.+...      .....+++|++|+|.++.+.   +.      .+...+..+++|++|.|
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            35666677799999999999987742      12457999999999997432   21      23344678999999999


Q ss_pred             eeeEeCCCceeE----E-EecCCcceEEEEecCCccccCC-ceEEEEec---------cCcceEEEeecCCCce------
Q 017981          196 KGYIYGTDSVTL----N-IPSLTLKRLRLELEAPEEDYIT-KYKVIIRA---------PNLEQLYIRDHGPGLY------  254 (363)
Q Consensus       196 ~~c~~~~~~~~l----~-i~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~---------p~L~~L~l~~~~~~~~------  254 (363)
                      .+|.+... ...    . ..+++|+.|++.+|........ ........         |+|++|.++++.....      
T Consensus       102 s~n~l~~~-~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          102 SDNAFGPT-AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CSCCCCTT-THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCcCCHH-HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            99986542 111    1 2358999999999976421000 00001112         8999999999876522      


Q ss_pred             -eeecCCCceEEEEeeeeceeccCCCchhhHHHHHH-HhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEE
Q 017981          255 -VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVD-MLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEV  332 (363)
Q Consensus       255 -~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l  332 (363)
                       .+..+++|+.+.+..+.-.      .... ..+.. .+..+++|+.|.++++.+.+ ........ .+..+++|+.|++
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~------~~g~-~~l~~~~l~~~~~L~~L~Ls~n~l~~-~g~~~l~~-~l~~~~~L~~L~L  251 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIR------PEGI-EHLLLEGLAYCQELKVLDLQDNTFTH-LGSSALAI-ALKSWPNLRELGL  251 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCC------HHHH-HHHHHTTGGGCTTCCEEECCSSCCHH-HHHHHHHH-HGGGCTTCCEEEC
T ss_pred             HHHHhCCCcCEEECcCCCCC------HhHH-HHHHHHHhhcCCCccEEECcCCCCCc-HHHHHHHH-HHccCCCcCEEEC
Confidence             2457889999988755321      1111 12333 77889999999999987611 00011111 3446778999999


Q ss_pred             EeccCCChHH---HHHHHHh--CCCCcceEEeeecC
Q 017981          333 EGVGACGWLS---LAHIFSR--MPKLESIVFEEVRM  363 (363)
Q Consensus       333 ~~~~~~~~~~---l~~ll~~--~p~L~~L~l~~~~~  363 (363)
                      +.|.- +..+   +...++.  +|+|+.|++..+++
T Consensus       252 ~~n~i-~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          252 NDCLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             TTCCC-CHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             CCCCC-chhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            98864 4443   3445544  89999999998764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.07  E-value=5.3e-12  Score=109.87  Aligned_cols=127  Identities=15%  Similarity=0.058  Sum_probs=76.1

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      ++++++.+..+...  .+ ..+..+++|++|++++|.+...+....+++|++|+|.++.+++-. ...+..+++|++|.+
T Consensus        41 ~~L~~L~l~~~~i~--~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIK--SV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCC--CC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCcc--cc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEEC
Confidence            57787777655431  22 245668888888888887776555667888888888888765431 233567788888888


Q ss_pred             eeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981          196 KGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG  250 (363)
Q Consensus       196 ~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  250 (363)
                      .+|.+.+. ..-.+ ..++|+.|++.+|........   ....+++|++|+++++.
T Consensus       117 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A          117 VENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYNQ  168 (272)
T ss_dssp             TTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSC
T ss_pred             CCCcCCcc-CHHHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCCC
Confidence            88765443 11111 235677777776654321000   01234566666666553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.06  E-value=2e-10  Score=109.97  Aligned_cols=63  Identities=13%  Similarity=0.208  Sum_probs=39.8

Q ss_pred             ccCcceEEEeecCCCcee------eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981          238 APNLEQLYIRDHGPGLYV------VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       238 ~p~L~~L~l~~~~~~~~~------~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  307 (363)
                      +++|++|+++++......      ...++.|+.+.+.....       .......+...+..+++++.|.++.+..
T Consensus       195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l-------~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL-------TDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE-------EHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             cccccEEEccCCccccccccccchhhhhhcccceecccccc-------chhHHHHHHHHhhhhccccccccccccc
Confidence            578888888876554321      23466777777765432       2222333556667788888888887654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.05  E-value=2e-11  Score=122.06  Aligned_cols=106  Identities=13%  Similarity=0.034  Sum_probs=73.6

Q ss_pred             CCceEEEEEcCCCccccCCc--ccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCc-cce
Q 017981          116 RNVREIEISLNDDECIELPH--CIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPA-LED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~  192 (363)
                      ++++.|++..+...  .+|.  .+..+++|+.|+|++|.+...|.+..+++|+.|+|.++.+.  .+..-+..+++ |++
T Consensus       548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred             CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence            37888888777653  7777  77788899999999888775566667888899999888776  23333667787 888


Q ss_pred             EEEeeeEeCCCceeEEE-ecCCcceEEEEecCCc
Q 017981          193 LSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPE  225 (363)
Q Consensus       193 L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~  225 (363)
                      |.|.+|.+..+...+.. ..++|+.|++.+|...
T Consensus       624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~  657 (876)
T 4ecn_A          624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG  657 (876)
T ss_dssp             EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             EECcCCCCCcCchhhhccccCCCCEEECcCCcCC
Confidence            88888875544111111 1134777777777653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.04  E-value=2.9e-11  Score=117.37  Aligned_cols=105  Identities=17%  Similarity=0.069  Sum_probs=46.7

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      +++.|+++.+.. ....|..+.++++|++|+|++|.+...  ..+..+++|++|+|.++.+.+-. ...+..+++|++|.
T Consensus        58 ~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~  135 (606)
T 3t6q_A           58 NLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLY  135 (606)
T ss_dssp             TCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG-GSCCTTCTTCCEEE
T ss_pred             cceEEECCCCcc-ceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC-cchhccCCcccEEE
Confidence            455555544332 112233444455555555555544322  12335555555555555544321 11134555555555


Q ss_pred             EeeeEeCCCceeEEEecCCcceEEEEecC
Q 017981          195 IKGYIYGTDSVTLNIPSLTLKRLRLELEA  223 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~  223 (363)
                      +.+|...+.........++|+.|++.+|.
T Consensus       136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  164 (606)
T 3t6q_A          136 LGSNHISSIKLPKGFPTEKLKVLDFQNNA  164 (606)
T ss_dssp             CCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred             CCCCcccccCcccccCCcccCEEEcccCc
Confidence            55554332200001113555555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.03  E-value=3.2e-12  Score=113.65  Aligned_cols=221  Identities=12%  Similarity=0.046  Sum_probs=137.6

Q ss_pred             CCceEEEEEcCCCc-cccCCcccccCCcccEEEecc-cccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccc
Q 017981          116 RNVREIEISLNDDE-CIELPHCIYTCKTLEVLKLDM-NFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALE  191 (363)
Q Consensus       116 ~~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~-~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  191 (363)
                      .++++|++..+... ...+|..+..+++|++|+|++ +.+... | .+..+++|++|+|.++.+.+. +...+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCC
Confidence            46788888766542 126777788888899999884 666532 2 355788889999988877643 223366788899


Q ss_pred             eEEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEecc-CcceEEEeecCCCce---eeecCCCceEEE
Q 017981          192 DLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAP-NLEQLYIRDHGPGLY---VVHELHSLTKAV  266 (363)
Q Consensus       192 ~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~~~~---~~~~~~~L~~~~  266 (363)
                      +|++.+|.+.+. ..-.+ ..++|+.|++.+|........   .....+ +|++|.++++.....   .+..+. |+.++
T Consensus       129 ~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~  203 (313)
T 1ogq_A          129 TLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD  203 (313)
T ss_dssp             EEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred             EEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence            998888875432 11111 247888888888865421000   012234 788888887654322   233444 77776


Q ss_pred             EeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHH
Q 017981          267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHI  346 (363)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l  346 (363)
                      +..+....           .....+..+++|+.|.++.+.+   .....    .+..+++|++|+++.+.-.+  .++..
T Consensus       204 Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l---~~~~~----~~~~l~~L~~L~Ls~N~l~~--~~p~~  263 (313)
T 1ogq_A          204 LSRNMLEG-----------DASVLFGSDKNTQKIHLAKNSL---AFDLG----KVGLSKNLNGLDLRNNRIYG--TLPQG  263 (313)
T ss_dssp             CCSSEEEE-----------CCGGGCCTTSCCSEEECCSSEE---CCBGG----GCCCCTTCCEEECCSSCCEE--CCCGG
T ss_pred             CcCCcccC-----------cCCHHHhcCCCCCEEECCCCce---eeecC----cccccCCCCEEECcCCcccC--cCChH
Confidence            65443211           0234466788888888888765   32111    23456778888888765321  13344


Q ss_pred             HHhCCCCcceEEeeec
Q 017981          347 FSRMPKLESIVFEEVR  362 (363)
Q Consensus       347 l~~~p~L~~L~l~~~~  362 (363)
                      +..+++|+.|+++.++
T Consensus       264 l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          264 LTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             GGGCTTCCEEECCSSE
T ss_pred             HhcCcCCCEEECcCCc
Confidence            6778888888888765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.03  E-value=3.8e-11  Score=117.08  Aligned_cols=223  Identities=10%  Similarity=-0.006  Sum_probs=143.4

Q ss_pred             CCceEEEEEcCCCccc----------------cCCcccc--cCCcccEEEecccccccC--CCcccCcccceeeeeeEE-
Q 017981          116 RNVREIEISLNDDECI----------------ELPHCIY--TCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNT-  174 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-  174 (363)
                      .+++.|+++.+.....                .+|..+.  ++++|++|+|++|.+...  ..+..+++|++|+|.++. 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            5899999987764220                1898888  899999999999987653  345689999999999998 


Q ss_pred             Ecc-c---hHHHH--hccCCccceEEEeeeEeCCCceeE-EE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEE
Q 017981          175 IDN-N---FSDWL--FSKCPALEDLSIKGYIYGTDSVTL-NI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYI  246 (363)
Q Consensus       175 ~~~-~---~l~~l--l~~cp~Le~L~L~~c~~~~~~~~l-~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l  246 (363)
                      +++ .   .+..+  +..+++|++|.+.+|.+..+ ... .+ ..++|+.|++.+|.....   .. ....+++|++|.+
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~---ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGK---LP-AFGSEIKLASLNL  360 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC-CCHHHHTTCTTCCEEECCSCCCEEE---CC-CCEEEEEESEEEC
T ss_pred             CccccchHHHHhhhccccCCCCCEEECCCCcCCcc-CchhhhccCCCCCEEeCcCCcCccc---hh-hhCCCCCCCEEEC
Confidence            765 2   23332  24569999999999876544 210 12 247899999999876522   11 2245688999998


Q ss_pred             eecCCCce--eeecCCC-ceEEEEeeeeceeccCCCchhhHHHHHHHhhc--cCcceEEEEeCCccccccccccccCCCC
Q 017981          247 RDHGPGLY--VVHELHS-LTKAVVDYGIECILDYDSPEDVAQAVVDMLRD--IKNIKSLSLSSGTMFALDRLDYANDHSF  321 (363)
Q Consensus       247 ~~~~~~~~--~~~~~~~-L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~l~~L~l~~~~~~~~~~l~~~~~~~~  321 (363)
                      +++....+  .+..+++ |+.+.+..+.-..            +...+..  +++|+.|+++.+.+   .....  + .+
T Consensus       361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~------------lp~~~~~~~l~~L~~L~Ls~N~l---~~~~p--~-~l  422 (636)
T 4eco_A          361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY------------IPNIFDAKSVSVMSAIDFSYNEI---GSVDG--K-NF  422 (636)
T ss_dssp             CSSEEEECCTTSEEECTTCCEEECCSSCCSS------------CCSCCCTTCSSCEEEEECCSSCT---TTTTT--C-SS
T ss_pred             CCCccccccHhhhhhcccCcEEEccCCcCcc------------cchhhhhcccCccCEEECcCCcC---CCcch--h-hh
Confidence            88754322  2566777 8888776544211            1112222  33788888887765   22111  1 12


Q ss_pred             C-------CCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          322 P-------TFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       322 ~-------~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      +       .+.+|+.|+++.+.-..  .-..++..+++|+.|+++.+++
T Consensus       423 ~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~l  469 (636)
T 4eco_A          423 DPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNML  469 (636)
T ss_dssp             CTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSCC
T ss_pred             cccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCCC
Confidence            2       44577788877765421  1223556678888887776653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.02  E-value=1.7e-10  Score=111.88  Aligned_cols=62  Identities=15%  Similarity=0.027  Sum_probs=29.0

Q ss_pred             eccCcceEEEeecCC-CceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981          237 RAPNLEQLYIRDHGP-GLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       237 ~~p~L~~L~l~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  307 (363)
                      .+|+|++|.++++.. ....+..+++|+.+++..+.....+         .....+..+++|+.|.++.+.+
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~---------~~~~~~~~~~~L~~L~L~~n~l  388 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG---------CCSYSDLGTNSLRHLDLSFNGA  388 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEE---------ECCHHHHCCSCCCEEECCSCSE
T ss_pred             CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCc---------chhhhhccCCcccEeECCCCcc
Confidence            445555555555421 1223445555555555433211000         0123456667777777766544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.02  E-value=1.4e-10  Score=116.78  Aligned_cols=84  Identities=14%  Similarity=0.082  Sum_probs=54.2

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CC--cccCcccceeeeeeEEEccchHHHHhccCCccc
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALE  191 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  191 (363)
                      .+++.|+++.+.. ....|..+..+++|++|+|++|.+...  ..  +..+++|++|+|+++.+.+......+.++++|+
T Consensus        73 ~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~  151 (844)
T 3j0a_A           73 PNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK  151 (844)
T ss_dssp             TTCCEEECTTCCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred             CCCCEEECCCCcC-cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence            4677777765543 223455666677788888877776642  22  456777888888777765543334466777777


Q ss_pred             eEEEeeeEe
Q 017981          192 DLSIKGYIY  200 (363)
Q Consensus       192 ~L~L~~c~~  200 (363)
                      +|.|.+|.+
T Consensus       152 ~L~Ls~N~i  160 (844)
T 3j0a_A          152 SIDFSSNQI  160 (844)
T ss_dssp             EEEEESSCC
T ss_pred             EEECCCCcC
Confidence            777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.02  E-value=1.4e-11  Score=107.93  Aligned_cols=198  Identities=14%  Similarity=0.101  Sum_probs=94.8

Q ss_pred             CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE-eCCCceeEEE-ecCCcce
Q 017981          141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI-YGTDSVTLNI-PSLTLKR  216 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~-~~~~~~~l~i-~~~~L~~  216 (363)
                      ++|++|+|+++.+...+  .+..+++|++|+|.++.+++-. ...+.++++|++|.+.+|. .... ..-.+ ..++|+.
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~  109 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHT  109 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCE
Confidence            46666666666555432  2445666666666666543321 1224556666666666653 2222 00011 1256666


Q ss_pred             EEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc
Q 017981          217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD  293 (363)
Q Consensus       217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  293 (363)
                      |++.+|.......   .....+++|++|.++++......   +..+++|+.+.+..+.-...           ....+..
T Consensus       110 L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~  175 (285)
T 1ozn_A          110 LHLDRCGLQELGP---GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-----------PERAFRG  175 (285)
T ss_dssp             EECTTSCCCCCCT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-----------CTTTTTT
T ss_pred             EECCCCcCCEECH---hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-----------CHHHhcC
Confidence            6666665432100   00123456666666665443322   34556666665543321100           1112445


Q ss_pred             cCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       294 l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      +++|+.|.++++.+   ..+.  .. .+..+++|+.|+++.+.-.+  .....+..+|+|+.|+++.|+
T Consensus       176 l~~L~~L~l~~n~l---~~~~--~~-~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          176 LHSLDRLLLHQNRV---AHVH--PH-AFRDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CTTCCEEECCSSCC---CEEC--TT-TTTTCTTCCEEECCSSCCSC--CCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccCEEECCCCcc---cccC--Hh-HccCcccccEeeCCCCcCCc--CCHHHcccCcccCEEeccCCC
Confidence            56666666666544   2211  11 23345566666666553322  112344566666666666553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.02  E-value=2.9e-11  Score=116.39  Aligned_cols=232  Identities=11%  Similarity=0.061  Sum_probs=123.9

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCC-cccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .++++.+..........+..+..+++|++|++.++.+...+. ...+ +|++|++.++.+..-.    ...+++|++|.+
T Consensus       258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~----~~~l~~L~~L~l  332 (570)
T 2z63_A          258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFP----TLKLKSLKRLTF  332 (570)
T ss_dssp             EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCC----BCBCSSCCEEEE
T ss_pred             chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccC----cccccccCEEeC
Confidence            456666655432233566677779999999999998876543 3355 8999999988775221    146777777777


Q ss_pred             eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce--eeecCCCceEEEEeeeece
Q 017981          196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY--VVHELHSLTKAVVDYGIEC  273 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~L~~~~l~~~~~~  273 (363)
                      .+|...+. ... ...++|+.|++.+|...... ........+++|++|.++++.....  .+..+++|+.+.+..+...
T Consensus       333 ~~n~~~~~-~~~-~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~  409 (570)
T 2z63_A          333 TSNKGGNA-FSE-VDLPSLEFLDLSRNGLSFKG-CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK  409 (570)
T ss_dssp             ESCBSCCB-CCC-CBCTTCCEEECCSSCCBEEE-EEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE
T ss_pred             cCCccccc-ccc-ccCCCCCEEeCcCCccCccc-cccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccc
Confidence            77663332 111 23466677766666432110 0000012345555555555433221  1444555555544332211


Q ss_pred             eccC---C-----------CchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCC
Q 017981          274 ILDY---D-----------SPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACG  339 (363)
Q Consensus       274 ~~~~---~-----------~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  339 (363)
                      ....   +           ..+.........+.++++|+.|.++++.+   ..- .... .+..+++|+.|+++.+.-.+
T Consensus       410 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~-~~p~-~~~~l~~L~~L~l~~n~l~~  484 (570)
T 2z63_A          410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF---QEN-FLPD-IFTELRNLTFLDLSQCQLEQ  484 (570)
T ss_dssp             SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE---GGG-EECS-CCTTCTTCCEEECTTSCCCE
T ss_pred             cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcC---ccc-cchh-hhhcccCCCEEECCCCcccc
Confidence            0000   0           00000000223455667777777776654   200 0011 34566778888887764311


Q ss_pred             hHHHHHHHHhCCCCcceEEeeecC
Q 017981          340 WLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       340 ~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                        ..+..+..+|+|+.|++..+++
T Consensus       485 --~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          485 --LSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             --ECTTTTTTCTTCCEEECCSSCC
T ss_pred             --CChhhhhcccCCCEEeCCCCcC
Confidence              1133456788899998887653

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.01  E-value=1.6e-10  Score=73.27  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=33.7

Q ss_pred             CCcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhc
Q 017981            7 TEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWT   46 (363)
Q Consensus         7 ~~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~   46 (363)
                      +.+.+..||+|++.+||++||.+|+++++.|||+|+.+..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4567999999999999999999999999999999997543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.00  E-value=1.1e-11  Score=111.03  Aligned_cols=219  Identities=12%  Similarity=0.076  Sum_probs=137.9

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .+++.|++..+... ...|..+..+++|++|+|++|.+...+.. .+++|++|++.++.+..-. ...+.++++|++|.+
T Consensus        78 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l  154 (332)
T 2ft3_A           78 QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPN-LPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEM  154 (332)
T ss_dssp             TTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSS-CCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEEC
T ss_pred             CCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCcc-ccccCCEEECCCCccCccC-HhHhCCCccCCEEEC
Confidence            47888888766542 22345566788888888888877744332 2378888988888765431 234678899999999


Q ss_pred             eeeEeCC--CceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeee
Q 017981          196 KGYIYGT--DSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYG  270 (363)
Q Consensus       196 ~~c~~~~--~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~  270 (363)
                      .+|....  . ..-.+...+|+.|++.+|........      -.++|++|+++++.....   .+..+++|+.+.+..+
T Consensus       155 ~~n~l~~~~~-~~~~~~~l~L~~L~l~~n~l~~l~~~------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N  227 (332)
T 2ft3_A          155 GGNPLENSGF-EPGAFDGLKLNYLRISEAKLTGIPKD------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN  227 (332)
T ss_dssp             CSCCCBGGGS-CTTSSCSCCCSCCBCCSSBCSSCCSS------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred             CCCccccCCC-CcccccCCccCEEECcCCCCCccCcc------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            8886532  1 11111122788888888875432111      127899999998766543   3667788888877654


Q ss_pred             eceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCC--hHHHHH--H
Q 017981          271 IECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACG--WLSLAH--I  346 (363)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~l~~--l  346 (363)
                      .-..   .        ....+..+++|+.|+++++.+   ..+..    .+..+++|+.|+++.+.-..  ...+..  +
T Consensus       228 ~l~~---~--------~~~~~~~l~~L~~L~L~~N~l---~~lp~----~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  289 (332)
T 2ft3_A          228 QIRM---I--------ENGSLSFLPTLRELHLDNNKL---SRVPA----GLPDLKLLQVVYLHTNNITKVGVNDFCPVGF  289 (332)
T ss_dssp             CCCC---C--------CTTGGGGCTTCCEEECCSSCC---CBCCT----TGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred             cCCc---C--------ChhHhhCCCCCCEEECCCCcC---eecCh----hhhcCccCCEEECCCCCCCccChhHcccccc
Confidence            3211   0        122467889999999999877   43322    34467789999998875311  111110  0


Q ss_pred             HHhCCCCcceEEeeec
Q 017981          347 FSRMPKLESIVFEEVR  362 (363)
Q Consensus       347 l~~~p~L~~L~l~~~~  362 (363)
                      ....+.|+.|++..+.
T Consensus       290 ~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          290 GVKRAYYNGISLFNNP  305 (332)
T ss_dssp             CSSSCCBSEEECCSSS
T ss_pred             ccccccccceEeecCc
Confidence            1125678888887764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.00  E-value=1.6e-12  Score=115.15  Aligned_cols=202  Identities=13%  Similarity=0.026  Sum_probs=125.1

Q ss_pred             CCceEEEEEcCCCccc-cCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          116 RNVREIEISLNDDECI-ELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      ++++.|++..+..... ..+..+..+++|++|+|++|.+...+ .+..+++|++|+|.++.+.+......+..+++|++|
T Consensus        52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  131 (306)
T 2z66_A           52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  131 (306)
T ss_dssp             TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred             ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence            4788888866543211 22445556788888888888766432 355788888888888877654322346778888888


Q ss_pred             EEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEee
Q 017981          194 SIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDY  269 (363)
Q Consensus       194 ~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~  269 (363)
                      .+.+|...+. ..-.+ ..++|+.|.+.+|.....  ........+++|++|+++++.....   .+..+++|+.+.+..
T Consensus       132 ~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          132 DISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             ECTTSCCEEC-STTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ECCCCcCCcc-chhhcccCcCCCEEECCCCccccc--cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence            8888763221 00001 237888888887754320  0111223467888888888766543   355678888887765


Q ss_pred             eeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCC-CCcceEEEEeccC
Q 017981          270 GIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTF-PFLNRLEVEGVGA  337 (363)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~  337 (363)
                      +.-..   .        ....+..+++|+.|+++++.+   .....  . .+..+ ++|+.|+++++.-
T Consensus       209 N~l~~---~--------~~~~~~~l~~L~~L~L~~N~l---~~~~~--~-~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          209 NNFFS---L--------DTFPYKCLNSLQVLDYSLNHI---MTSKK--Q-ELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             SCCSB---C--------CSGGGTTCTTCCEEECTTSCC---CBCSS--S-SCCCCCTTCCEEECTTCCE
T ss_pred             CccCc---c--------ChhhccCcccCCEeECCCCCC---cccCH--H-HHHhhhccCCEEEccCCCe
Confidence            43211   0        111256789999999999876   33221  1 23344 4899999988754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.00  E-value=1.6e-12  Score=115.52  Aligned_cols=201  Identities=16%  Similarity=0.058  Sum_probs=98.8

Q ss_pred             cCCcccEEEecccccccC-CC-c--ccCcccceeeeeeEEEccc--hHHHHhc-cCCccceEEEeeeEeCCCceeEEE-e
Q 017981          139 TCKTLEVLKLDMNFFIKT-PP-T--IFFPSAKILHVILNTIDNN--FSDWLFS-KCPALEDLSIKGYIYGTDSVTLNI-P  210 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~-~~-~--~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~L~~c~~~~~~~~l~i-~  210 (363)
                      .+++|++|+|++|.+... +. .  ..+++|++|+|.++.+++.  .+..+.. .+++|++|.+.+|...+. ..-.+ .
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhcc
Confidence            355666666666655431 21 1  4556666666666655443  1222111 126666666666654333 10011 2


Q ss_pred             cCCcceEEEEecCCccccCCceEE-EEeccCcceEEEeecCCCce------eeecCCCceEEEEeeeeceeccCCCchhh
Q 017981          211 SLTLKRLRLELEAPEEDYITKYKV-IIRAPNLEQLYIRDHGPGLY------VVHELHSLTKAVVDYGIECILDYDSPEDV  283 (363)
Q Consensus       211 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~  283 (363)
                      .++|+.|++.+|...........+ ....++|++|+++++.....      .+..+++|+.+++..+.-....       
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------  244 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-------  244 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-------
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-------
Confidence            356666666665432100000000 02346666666666554311      1234456666655433221100       


Q ss_pred             HHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          284 AQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       284 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                         ....+..+++|+.|.++.+.+   ..+..    .++  ++|+.|+++.+.-.+.   +. +..+|+|+.|+++.|++
T Consensus       245 ---~~~~~~~l~~L~~L~Ls~N~l---~~ip~----~~~--~~L~~L~Ls~N~l~~~---p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          245 ---GAPSCDWPSQLNSLNLSFTGL---KQVPK----GLP--AKLSVLDLSYNRLDRN---PS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             ---CCSCCCCCTTCCEEECTTSCC---SSCCS----SCC--SEEEEEECCSSCCCSC---CC-TTTSCEEEEEECTTCTT
T ss_pred             ---chhhhhhcCCCCEEECCCCcc---Chhhh----hcc--CCceEEECCCCCCCCC---hh-HhhCCCCCEEeccCCCC
Confidence               001123456788888887766   32211    222  6788888887754322   22 66788888888887764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.00  E-value=4e-11  Score=116.92  Aligned_cols=150  Identities=13%  Similarity=0.075  Sum_probs=93.4

Q ss_pred             CCceEEEEEcCCCccccCCc--ccccCCcccEEEecccccc-cCCCcccCcccceeeeeeEEEccchHHHHhccCCc-cc
Q 017981          116 RNVREIEISLNDDECIELPH--CIYTCKTLEVLKLDMNFFI-KTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPA-LE  191 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le  191 (363)
                      .++++|++..+...  .+|.  .+..+++|++|++++|.+. ..|.+..+++|++|+|.++.+..  +..-+..+++ |+
T Consensus       305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~~L~  380 (636)
T 4eco_A          305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE--IPANFCGFTEQVE  380 (636)
T ss_dssp             GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEE--CCTTSEEECTTCC
T ss_pred             CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcccc--ccHhhhhhcccCc
Confidence            68999998877653  7887  7888999999999999887 44666678899999999988762  3333677888 99


Q ss_pred             eEEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCce----EEEEeccCcceEEEeecCCCcee---eecCCCce
Q 017981          192 DLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKY----KVIIRAPNLEQLYIRDHGPGLYV---VHELHSLT  263 (363)
Q Consensus       192 ~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~----~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~  263 (363)
                      +|.+.+|....+...+... .++|+.|++.+|..........    .-....++|++|.++++....+.   +..+++|+
T Consensus       381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~  460 (636)
T 4eco_A          381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS  460 (636)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred             EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence            9999888755441111111 1367778877776543100000    00013446666666665443221   23345555


Q ss_pred             EEEEee
Q 017981          264 KAVVDY  269 (363)
Q Consensus       264 ~~~l~~  269 (363)
                      .+.+..
T Consensus       461 ~L~Ls~  466 (636)
T 4eco_A          461 SINLMG  466 (636)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.99  E-value=9e-11  Score=103.12  Aligned_cols=165  Identities=16%  Similarity=0.159  Sum_probs=78.3

Q ss_pred             CCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEE
Q 017981          140 CKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRL  219 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l  219 (363)
                      +++|++|++++|.+...++...+++|++|+|.++.+++-.  . +..+++|++|.+.+|...+. .. -...++|+.|++
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDL-SS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCG-GG-GTTCTTCCEEEC
T ss_pred             cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCC-hh-hccCCCCCEEEC
Confidence            4445555555554443344444555555555555443321  1 44455555555555443332 11 001244555555


Q ss_pred             EecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcce
Q 017981          220 ELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIK  298 (363)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~  298 (363)
                      .+|.....     .....+++|++|+++++..... .+..+++|+.+.+..+.-..            ... +..+++|+
T Consensus       120 ~~n~i~~~-----~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~------------~~~-l~~l~~L~  181 (291)
T 1h6t_A          120 EHNGISDI-----NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD------------IVP-LAGLTKLQ  181 (291)
T ss_dssp             TTSCCCCC-----GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC------------CGG-GTTCTTCC
T ss_pred             CCCcCCCC-----hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc------------chh-hcCCCccC
Confidence            54443221     0012357788888887755432 24456666666655432210            011 55566666


Q ss_pred             EEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981          299 SLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV  335 (363)
Q Consensus       299 ~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~  335 (363)
                      .|.++++.+   ..+.     .+..+++|+.|++.++
T Consensus       182 ~L~L~~N~i---~~l~-----~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          182 NLYLSKNHI---SDLR-----ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             EEECCSSCC---CBCG-----GGTTCTTCSEEEEEEE
T ss_pred             EEECCCCcC---CCCh-----hhccCCCCCEEECcCC
Confidence            666666655   3221     2334555666666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=5.2e-11  Score=119.09  Aligned_cols=224  Identities=9%  Similarity=-0.039  Sum_probs=140.8

Q ss_pred             CCceEEEEEcCCCccc----------------cCCcccc--cCCcccEEEecccccccC-C-CcccCcccceeeeeeEE-
Q 017981          116 RNVREIEISLNDDECI----------------ELPHCIY--TCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNT-  174 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~-  174 (363)
                      .+++.|+++.+.....                .+|..+.  ++++|++|+|++|.+... | .+..+++|+.|+|.++. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            5899999987765321                2888877  899999999999976643 3 35689999999999997 


Q ss_pred             Ecc-c---hHHHH---hccCCccceEEEeeeEeCCCcee-EEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEE
Q 017981          175 IDN-N---FSDWL---FSKCPALEDLSIKGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLY  245 (363)
Q Consensus       175 ~~~-~---~l~~l---l~~cp~Le~L~L~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~  245 (363)
                      +++ .   .+..+   +..+|+|++|.|.+|.+..+ .. -.+ ..++|+.|++.+|.....    . ....+++|+.|.
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~~l----p-~~~~L~~L~~L~  601 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PASASLQKMVKLGLLDCVHNKVRHL----E-AFGTNVKLTDLK  601 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CCHHHHTTCTTCCEEECTTSCCCBC----C-CCCTTSEESEEE
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CChhhhhcCCCCCEEECCCCCcccc----h-hhcCCCcceEEE
Confidence            665 2   33332   35678999999999876543 21 012 247899999998876421    1 224568899999


Q ss_pred             EeecCCCcee--eecCCC-ceEEEEeeeeceeccCCCchhhHHHHHHHhhccC--cceEEEEeCCcccccccccc-ccCC
Q 017981          246 IRDHGPGLYV--VHELHS-LTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK--NIKSLSLSSGTMFALDRLDY-ANDH  319 (363)
Q Consensus       246 l~~~~~~~~~--~~~~~~-L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~l~~L~l~~~~~~~~~~l~~-~~~~  319 (363)
                      ++++....+.  +..+++ |+.+.+..+.-..            +...+...+  +|+.|.++.+.+   ..... ... 
T Consensus       602 Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~------------lp~~~~~~~~~~L~~L~Ls~N~l---~g~ip~l~~-  665 (876)
T 4ecn_A          602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY------------IPNIFNAKSVYVMGSVDFSYNKI---GSEGRNISC-  665 (876)
T ss_dssp             CCSSCCSCCCTTSCEECTTCCEEECCSSCCCS------------CCSCCCTTCSSCEEEEECCSSCT---TTTSSSCSS-
T ss_pred             CcCCccccchHHHhhccccCCEEECcCCCCCc------------CchhhhccccCCCCEEECcCCcC---CCccccchh-
Confidence            9987665332  556677 8888776554211            112223333  488888877765   22111 000 


Q ss_pred             CCC--CCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          320 SFP--TFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       320 ~~~--~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      ...  ...+|+.|+++.+.-..  .-..++..+++|+.|+++.+++
T Consensus       666 ~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          666 SMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             CTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSCCC
T ss_pred             hhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCCcC
Confidence            111  22367777777665421  1223455677777777776653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.99  E-value=3.8e-11  Score=104.65  Aligned_cols=132  Identities=17%  Similarity=0.090  Sum_probs=82.7

Q ss_pred             CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      .+++.|+++.+..  ..++. .+..+++|++|+|++|.+...+  .+..+++|++|+|.++.+..-. ...+.++++|++
T Consensus        28 ~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCE
T ss_pred             CCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccE
Confidence            4677777765543  23333 5566888888888888776432  3557888888888888765432 233567888888


Q ss_pred             EEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc
Q 017981          193 LSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL  253 (363)
Q Consensus       193 L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~  253 (363)
                      |.+.+|...+. ....+. .++|+.|++.+|.....  ........+++|++|+++++....
T Consensus       105 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          105 LVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             EECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             EECCCCCcccc-CchhcccCCCCCEEECcCCcccee--cCchhhccCCCCCEEECCCCCCCc
Confidence            88888775544 222232 37888888888765431  001111345778888888775543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.99  E-value=3e-12  Score=120.01  Aligned_cols=245  Identities=11%  Similarity=0.071  Sum_probs=145.9

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccC------CCcccCcccceeeeeeEEEccchHHHHhccCC-
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT------PPTIFFPSAKILHVILNTIDNNFSDWLFSKCP-  188 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~------~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp-  188 (363)
                      +.+++|+++.+..........+..+++|++|+|++|.+.+.      .....+++|++|+|+++.+.+.++..+...++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            35778888766543334344456699999999999987632      12346799999999999988777777777776 


Q ss_pred             ---ccceEEEeeeEeCCCce--eE--E-EecCCcceEEEEecCCccccCCc-e-EEEEeccCcceEEEeecCCCce----
Q 017981          189 ---ALEDLSIKGYIYGTDSV--TL--N-IPSLTLKRLRLELEAPEEDYITK-Y-KVIIRAPNLEQLYIRDHGPGLY----  254 (363)
Q Consensus       189 ---~Le~L~L~~c~~~~~~~--~l--~-i~~~~L~~L~l~~~~~~~~~~~~-~-~~~~~~p~L~~L~l~~~~~~~~----  254 (363)
                         +|++|++.+|..... .  .+  . ...++|++|++.+|......... . .+....++|++|.++++.....    
T Consensus        83 ~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGA-GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             TTCCCCEEECTTSCCBGG-GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCceeEEEccCCCCCHH-HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence               799999999875431 1  00  1 12478999999888653210000 0 0001124577777766644321    


Q ss_pred             ---eeecCCCceEEEEeeeeceecc------------------CCC----chhhHHHHHHHhhccCcceEEEEeCCcccc
Q 017981          255 ---VVHELHSLTKAVVDYGIECILD------------------YDS----PEDVAQAVVDMLRDIKNIKSLSLSSGTMFA  309 (363)
Q Consensus       255 ---~~~~~~~L~~~~l~~~~~~~~~------------------~~~----~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~  309 (363)
                         .+..+++|+.+++..+.-...+                  .+.    .......+...+..+++|+.|.++++.+.+
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence               1234566666655543210000                  000    011112356667778888888888775511


Q ss_pred             ccccccccCCCCCCCCCcceEEEEeccCCChHH---HHHHHHhCCCCcceEEeeecC
Q 017981          310 LDRLDYANDHSFPTFPFLNRLEVEGVGACGWLS---LAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       310 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---l~~ll~~~p~L~~L~l~~~~~  363 (363)
                       ..+....+.....+++|++|+++.+.- +..+   +...+..+|+|++|+++.+++
T Consensus       242 -~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          242 -VGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             -HHHHHHHHHHTSTTCCCCEEECTTSCC-CHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             -HHHHHHHHHHhcCCCCceEEECcCCCC-CHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence             111110110122466899999988743 4444   666777899999999987753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.98  E-value=8.9e-10  Score=106.51  Aligned_cols=131  Identities=16%  Similarity=0.071  Sum_probs=75.5

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .+++.|+++.+...  .+|.   .+++|++|+|++|.+...+.  .+++|++|+|.++.++.-     -..+++|+.|.+
T Consensus        61 ~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l-----~~~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHL-----PALPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCC-----CCCCTTCCEEEC
T ss_pred             CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCC-----CCCCCCcCEEEC
Confidence            46677777655432  3444   45677777777776654443  566777777776655432     114566777777


Q ss_pred             eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeee
Q 017981          196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYG  270 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~  270 (363)
                      .+|....+ ..   ..++|+.|++.+|.....       ....++|+.|.++++....+. ..+++|+.+.+..+
T Consensus       129 ~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-------~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N  191 (622)
T 3g06_A          129 FGNQLTSL-PV---LPPGLQELSVSDNQLASL-------PALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDN  191 (622)
T ss_dssp             CSSCCSCC-CC---CCTTCCEEECCSSCCSCC-------CCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSS
T ss_pred             CCCCCCcC-CC---CCCCCCEEECcCCcCCCc-------CCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCC
Confidence            76654443 11   126777777777654321       112456777777766554433 45567777766544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.97  E-value=2.1e-10  Score=103.65  Aligned_cols=45  Identities=16%  Similarity=0.243  Sum_probs=33.5

Q ss_pred             HHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981          287 VVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA  337 (363)
Q Consensus       287 ~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  337 (363)
                      +...+..+++|+.|+++++.+   ..+...   .+..+++|+.|++.+++-
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l---~~i~~~---~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQL---KSVPDG---IFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCC---CCCCTT---TTTTCTTCCEEECCSSCB
T ss_pred             hHHHHhcccCCCEEECCCCCC---CccCHH---HHhcCCCCCEEEeeCCCc
Confidence            566788999999999999877   433221   234678899999998764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.97  E-value=7.5e-11  Score=109.90  Aligned_cols=224  Identities=13%  Similarity=0.080  Sum_probs=147.9

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      .+++.|+++.+... .-.+..+.++++|++|+|++|.+...+  .+..+++|++|+|.++.++.-. ...+..+++|++|
T Consensus        64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCcee
Confidence            57888888766542 122345667899999999998876532  3557899999999998776431 2346788999999


Q ss_pred             EEeeeEeCCCcee-EEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeee
Q 017981          194 SIKGYIYGTDSVT-LNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGI  271 (363)
Q Consensus       194 ~L~~c~~~~~~~~-l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~  271 (363)
                      .|.+|.+... .. .....++|+.|++.+|........  .....+++|++|+++++....+ .+..+++|+.+++..+.
T Consensus       142 ~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          142 WLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH  218 (440)
T ss_dssp             ECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECT--TTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSC
T ss_pred             eCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCc--chhhcccccCeecCCCCcCccccccCCCcccCEEECCCCc
Confidence            9998864322 11 011247899999988643221000  0112468899999998866533 35677888888876543


Q ss_pred             ceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCC
Q 017981          272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMP  351 (363)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p  351 (363)
                      -..           .....+.++++|+.|.++.+.+   ..+..  . .+..+++|+.|+++.+.-...  ....+..++
T Consensus       219 l~~-----------~~~~~~~~l~~L~~L~L~~n~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~  279 (440)
T 3zyj_A          219 LSA-----------IRPGSFQGLMHLQKLWMIQSQI---QVIER--N-AFDNLQSLVEINLAHNNLTLL--PHDLFTPLH  279 (440)
T ss_dssp             CCE-----------ECTTTTTTCTTCCEEECTTCCC---CEECT--T-SSTTCTTCCEEECTTSCCCCC--CTTTTSSCT
T ss_pred             cCc-----------cChhhhccCccCCEEECCCCce---eEECh--h-hhcCCCCCCEEECCCCCCCcc--ChhHhcccc
Confidence            211           0133467889999999998876   43322  1 345678899999988754221  123467789


Q ss_pred             CCcceEEeeecC
Q 017981          352 KLESIVFEEVRM  363 (363)
Q Consensus       352 ~L~~L~l~~~~~  363 (363)
                      +|+.|+++.|.+
T Consensus       280 ~L~~L~L~~Np~  291 (440)
T 3zyj_A          280 HLERIHLHHNPW  291 (440)
T ss_dssp             TCCEEECCSSCE
T ss_pred             CCCEEEcCCCCc
Confidence            999999988763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.97  E-value=3.1e-11  Score=109.51  Aligned_cols=72  Identities=10%  Similarity=0.022  Sum_probs=35.2

Q ss_pred             HHHHhhcc-CcceEEEEeCCcccccccccc--ccCCCCCCCCCcceEEEEecc--CCChHHHHHHHHhCC---CCcceEE
Q 017981          287 VVDMLRDI-KNIKSLSLSSGTMFALDRLDY--ANDHSFPTFPFLNRLEVEGVG--ACGWLSLAHIFSRMP---KLESIVF  358 (363)
Q Consensus       287 ~~~~l~~l-~~l~~L~l~~~~~~~~~~l~~--~~~~~~~~~~~L~~L~l~~~~--~~~~~~l~~ll~~~p---~L~~L~l  358 (363)
                      +...+... ++|+.|+++++.+   .....  ... .+..+++|+.|+++++.  ..+..++..+....+   +|+.|++
T Consensus       216 l~~~l~~~~~~L~~L~Ls~N~l---~~~~~~~l~~-~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL  291 (362)
T 3goz_A          216 LAYIFSSIPNHVVSLNLCLNCL---HGPSLENLKL-LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK  291 (362)
T ss_dssp             HHHHHHHSCTTCCEEECCSSCC---CCCCHHHHHH-TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred             HHHHHhcCCCCceEEECcCCCC---CcHHHHHHHH-HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence            44444443 4777777777655   22111  011 23355567777777664  234444555444433   3444445


Q ss_pred             eeec
Q 017981          359 EEVR  362 (363)
Q Consensus       359 ~~~~  362 (363)
                      +.++
T Consensus       292 ~~N~  295 (362)
T 3goz_A          292 NGKE  295 (362)
T ss_dssp             TSCB
T ss_pred             CCCc
Confidence            4443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.97  E-value=3.7e-10  Score=93.14  Aligned_cols=59  Identities=19%  Similarity=0.066  Sum_probs=33.2

Q ss_pred             cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEe
Q 017981          139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIY  200 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  200 (363)
                      .+++|++|+++++.+...++...+++|++|++.++.+..-  . .+..+++|++|.+.+|..
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l  100 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDV  100 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTC
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCcc
Confidence            3556666666666555444555666666666666643222  1 245566666666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.96  E-value=1.9e-11  Score=107.31  Aligned_cols=191  Identities=14%  Similarity=0.103  Sum_probs=108.0

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      .++++.+.....  ..+|..+.  ++++.|+|+++.+...  ..+..+++|+.|+|.++.++.-..   ...+++|++|.
T Consensus        11 ~l~~l~~~~~~l--~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~   83 (290)
T 1p9a_G           11 SHLEVNCDKRNL--TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD   83 (290)
T ss_dssp             TCCEEECTTSCC--SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred             CccEEECCCCCC--CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence            455555543332  24444332  5777888887776543  234567778888888776654311   15677888888


Q ss_pred             EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeee
Q 017981          195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGI  271 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~  271 (363)
                      +.+|.+..+ .......++|+.|.+.+|........   ....+++|++|.++++......   +..+++|+.+.+..+.
T Consensus        84 Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           84 LSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             CCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            887765444 21111236777888877765432111   1123567788877776554332   3456677777665433


Q ss_pred             ceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEecc
Q 017981          272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG  336 (363)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~  336 (363)
                      -..   .        ....+..+++|+.|.++++.+   ..+..    .+....+|+.|.+.+++
T Consensus       160 l~~---l--------~~~~~~~l~~L~~L~L~~N~l---~~ip~----~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          160 LTE---L--------PAGLLNGLENLDTLLLQENSL---YTIPK----GFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CSC---C--------CTTTTTTCTTCCEEECCSSCC---CCCCT----TTTTTCCCSEEECCSCC
T ss_pred             CCc---c--------CHHHhcCcCCCCEEECCCCcC---CccCh----hhcccccCCeEEeCCCC
Confidence            210   0        123355677788888877766   43322    22234467777777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.95  E-value=2.1e-10  Score=115.52  Aligned_cols=105  Identities=18%  Similarity=0.076  Sum_probs=48.0

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      +++.|+++.+... ...+..+..+++|+.|+|++|.+...  ..+..+++|++|+|.++.+... ....+.++++|++|.
T Consensus       267 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          267 SVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYID  344 (844)
T ss_dssp             CCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEEE
T ss_pred             CccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEEE
Confidence            4555555433321 11233334456666666666555432  1234555666666666554322 012244555566665


Q ss_pred             EeeeEeCCCceeEE-EecCCcceEEEEecCC
Q 017981          195 IKGYIYGTDSVTLN-IPSLTLKRLRLELEAP  224 (363)
Q Consensus       195 L~~c~~~~~~~~l~-i~~~~L~~L~l~~~~~  224 (363)
                      +.+|..... ..-. ...++|+.|++.+|..
T Consensus       345 L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          345 LQKNHIAII-QDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             CCSCCCCCC-CSSCSCSCCCCCEEEEETCCS
T ss_pred             CCCCCCCcc-ChhhhcCCCCCCEEECCCCCC
Confidence            555543332 1111 1135555555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.95  E-value=5e-11  Score=105.73  Aligned_cols=229  Identities=13%  Similarity=0.052  Sum_probs=109.4

Q ss_pred             cceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCccccCCccc--ccCCcccEEEecccccccCC------Cccc
Q 017981           90 INKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCI--YTCKTLEVLKLDMNFFIKTP------PTIF  161 (363)
Q Consensus        90 l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~------~~~~  161 (363)
                      ++++.+... ......+..........++++|+++.+.. ....|..+  ..+++|++|+|++|.+....      ....
T Consensus        66 l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           66 VRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             eeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            444444422 22233344444444445677777765543 12333333  45666677777666655321      1124


Q ss_pred             CcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCC---ceeEE-EecCCcceEEEEecCCccccCCceEEEEe
Q 017981          162 FPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTD---SVTLN-IPSLTLKRLRLELEAPEEDYITKYKVIIR  237 (363)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~---~~~l~-i~~~~L~~L~l~~~~~~~~~~~~~~~~~~  237 (363)
                      +++|++|+|.++.+... ....+..+++|++|+|.+|...+.   ..... ...++|+.|.+.+|...........+...
T Consensus       144 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            56666666666655332 122344566666666666542110   00000 01245555555555432110000000112


Q ss_pred             ccCcceEEEeecCCCceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccccc
Q 017981          238 APNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYAN  317 (363)
Q Consensus       238 ~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~  317 (363)
                      +++|++|+++++.........+                             ..+..+++|+.|.++.+.+   ..+..  
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~-----------------------------~~~~~~~~L~~L~Ls~N~l---~~lp~--  268 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSA-----------------------------PRCMWSSALNSLNLSFAGL---EQVPK--  268 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCC-----------------------------SSCCCCTTCCCEECCSSCC---CSCCS--
T ss_pred             CCCCCEEECCCCCCCccchhhH-----------------------------HhccCcCcCCEEECCCCCC---Cchhh--
Confidence            3555555555543321110000                             0011235788888887766   42211  


Q ss_pred             CCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          318 DHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       318 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                        .+  +++|+.|+++.+.-...   . .+..+|+|+.|+++.|++
T Consensus       269 --~~--~~~L~~L~Ls~N~l~~~---~-~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          269 --GL--PAKLRVLDLSSNRLNRA---P-QPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             --CC--CSCCSCEECCSCCCCSC---C-CTTSCCCCSCEECSSTTT
T ss_pred             --hh--cCCCCEEECCCCcCCCC---c-hhhhCCCccEEECcCCCC
Confidence              22  26788888888754322   1 246778899888888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.94  E-value=1.9e-11  Score=110.91  Aligned_cols=112  Identities=13%  Similarity=0.151  Sum_probs=67.6

Q ss_pred             CcceEEEeecCCCcee-------eecCC-CceEEEEeeeeceeccCCCchhhHHHHHHHhhccC-cceEEEEeCCccccc
Q 017981          240 NLEQLYIRDHGPGLYV-------VHELH-SLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK-NIKSLSLSSGTMFAL  310 (363)
Q Consensus       240 ~L~~L~l~~~~~~~~~-------~~~~~-~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~~  310 (363)
                      +|++|+++++......       +...+ +|+.+.+..+.-       .......+...+..++ +|+.|+++++.+.+.
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-------~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-------ASKNCAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-------GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC-------chhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence            5666666655433111       12333 666666554432       1222334677788884 999999999876210


Q ss_pred             c--ccccccCCCCCC-CCCcceEEEEeccC--CChHHHHHHHHhCCCCcceEEeeec
Q 017981          311 D--RLDYANDHSFPT-FPFLNRLEVEGVGA--CGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       311 ~--~l~~~~~~~~~~-~~~L~~L~l~~~~~--~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      .  .+...    +.. .++|++|+++++.-  .....+..+++.+++|+.|+++.++
T Consensus       212 ~~~~l~~~----l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          212 SYAELAYI----FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CHHHHHHH----HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHH----HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            0  01111    112 24799999999864  2335667778899999999998775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.92  E-value=2.7e-10  Score=98.93  Aligned_cols=175  Identities=15%  Similarity=0.106  Sum_probs=85.8

Q ss_pred             CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981          141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR  218 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~  218 (363)
                      ++|++|+|+++.+...+  .+..+++|++|+|.++.++.-. ..++..+++|++|.+.+|.............++|+.|.
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            34555555555554332  2335555555555555443211 12234555556655555543322000001124555555


Q ss_pred             EEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccC
Q 017981          219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK  295 (363)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  295 (363)
                      +.++........   ....+++|++|.++++......   +..+++|+.+.+..+.-..   .        ....+..++
T Consensus       116 l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~--------~~~~~~~l~  181 (270)
T 2o6q_A          116 LDRNQLKSLPPR---VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR---V--------PEGAFDKLT  181 (270)
T ss_dssp             CCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---C--------CTTTTTTCT
T ss_pred             CCCCccCeeCHH---HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE---e--------ChhHhccCC
Confidence            555543221000   0123466666666665443322   3456666666664332110   0        112355678


Q ss_pred             cceEEEEeCCccccccccccccCCCCCCCCCcceEEEEecc
Q 017981          296 NIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG  336 (363)
Q Consensus       296 ~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~  336 (363)
                      +|+.|+++++.+   ..+..  . .+..+++|+.|++.+++
T Consensus       182 ~L~~L~L~~N~l---~~~~~--~-~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          182 ELKTLKLDNNQL---KRVPE--G-AFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TCCEEECCSSCC---SCCCT--T-TTTTCTTCCEEECCSSC
T ss_pred             CcCEEECCCCcC---CcCCH--H-HhccccCCCEEEecCCC
Confidence            888888888766   33221  1 24456778888888765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.91  E-value=9.1e-11  Score=101.92  Aligned_cols=199  Identities=15%  Similarity=0.111  Sum_probs=136.5

Q ss_pred             CcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEE
Q 017981          141 KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLE  220 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~  220 (363)
                      .+.+.++++++.+...|.. -.++|++|+|.++.+..-. ...+.++++|++|.+.+|.............++|+.|++.
T Consensus        16 ~~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            3578899998888754432 2368999999999876432 2346789999999999987554411111235899999999


Q ss_pred             ecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcc
Q 017981          221 LEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNI  297 (363)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l  297 (363)
                      +|........   ....+++|++|.++++......   +..+++|+.+.+..+.-..   .        ....+..+++|
T Consensus        94 ~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~--------~~~~~~~l~~L  159 (270)
T 2o6q_A           94 DNKLQALPIG---VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---L--------PKGVFDKLTSL  159 (270)
T ss_dssp             SSCCCCCCTT---TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---C--------CTTTTTTCTTC
T ss_pred             CCcCCcCCHh---HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc---c--------CHhHccCCccc
Confidence            9876532111   1134689999999998665443   5678999999887553211   0        12336778999


Q ss_pred             eEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       298 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      +.|.++++.+   ..+..  . .+..+++|+.|+++.+.-...  ....+..+++|+.|+++.|.+
T Consensus       160 ~~L~L~~n~l---~~~~~--~-~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          160 KELRLYNNQL---KRVPE--G-AFDKLTELKTLKLDNNQLKRV--PEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CEEECCSSCC---SCCCT--T-TTTTCTTCCEEECCSSCCSCC--CTTTTTTCTTCCEEECCSSCB
T ss_pred             ceeEecCCcC---cEeCh--h-HhccCCCcCEEECCCCcCCcC--CHHHhccccCCCEEEecCCCe
Confidence            9999999876   43322  1 345678899999998754221  123457899999999988763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.90  E-value=2.5e-10  Score=106.75  Aligned_cols=206  Identities=18%  Similarity=0.188  Sum_probs=141.6

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      .+++.|+++.+... ...+..+.++++|++|+|++|.+...+.  +..+++|++|+|.++.+..-. ...+..+++|++|
T Consensus        99 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L  176 (452)
T 3zyi_A           99 HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLMRL  176 (452)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCcccEE
Confidence            58999999876642 2233556679999999999998876533  557999999999999876431 2347789999999


Q ss_pred             EEeeeEeCCCceeEEE----ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEE
Q 017981          194 SIKGYIYGTDSVTLNI----PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAV  266 (363)
Q Consensus       194 ~L~~c~~~~~~~~l~i----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~  266 (363)
                      .+.+|..  . ..+..    ..++|+.|++.+|.....    . -...+++|++|+++++.....   .+.++++|+.+.
T Consensus       177 ~l~~~~~--l-~~i~~~~~~~l~~L~~L~L~~n~l~~~----~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  248 (452)
T 3zyi_A          177 DLGELKK--L-EYISEGAFEGLFNLKYLNLGMCNIKDM----P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW  248 (452)
T ss_dssp             ECCCCTT--C-CEECTTTTTTCTTCCEEECTTSCCSSC----C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred             eCCCCCC--c-cccChhhccCCCCCCEEECCCCccccc----c-cccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence            9998641  1 11211    237899999999976532    1 124568999999999877544   366788899888


Q ss_pred             EeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC---CChHHH
Q 017981          267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA---CGWLSL  343 (363)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~l  343 (363)
                      +..+.-...           ....+..+++|+.|+++++.+   ..+..  . .+..+++|+.|++.+++-   +...++
T Consensus       249 L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l---~~~~~--~-~~~~l~~L~~L~L~~Np~~CdC~~~~l  311 (452)
T 3zyi_A          249 VMNSQVSLI-----------ERNAFDGLASLVELNLAHNNL---SSLPH--D-LFTPLRYLVELHLHHNPWNCDCDILWL  311 (452)
T ss_dssp             CTTSCCCEE-----------CTTTTTTCTTCCEEECCSSCC---SCCCT--T-SSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred             eCCCcCceE-----------CHHHhcCCCCCCEEECCCCcC---CccCh--H-HhccccCCCEEEccCCCcCCCCCchHH
Confidence            765432110           123467789999999999876   43222  1 334677899999988752   333444


Q ss_pred             HHHHH
Q 017981          344 AHIFS  348 (363)
Q Consensus       344 ~~ll~  348 (363)
                      ...++
T Consensus       312 ~~~l~  316 (452)
T 3zyi_A          312 AWWLR  316 (452)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.90  E-value=7e-11  Score=116.23  Aligned_cols=39  Identities=10%  Similarity=0.156  Sum_probs=20.1

Q ss_pred             cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE
Q 017981          161 FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI  199 (363)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  199 (363)
                      .+++|+.|+|.++.+.+.-....+.++++|++|.+.+|.
T Consensus       403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  441 (680)
T 1ziw_A          403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK  441 (680)
T ss_dssp             TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred             CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence            455666666666554432111224555666666665554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.89  E-value=1.6e-10  Score=111.56  Aligned_cols=165  Identities=16%  Similarity=0.173  Sum_probs=82.0

Q ss_pred             CCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEE-ecCCcceEE
Q 017981          140 CKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLR  218 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~  218 (363)
                      +++|+.|.+.+|.+...++...+++|+.|+|+++.+.+-.  . +..+++|+.|.|.+|.+.+. .  .+ ..++|+.|+
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDL-S--SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCC-T--TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCC-h--hhccCCCCCEEE
Confidence            4444555555444443344444555555555555443321  1 44455555555555543332 1  01 124455555


Q ss_pred             EEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcc
Q 017981          219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNI  297 (363)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l  297 (363)
                      +.+|.....     .-...+|+|+.|.++++..... .+..+++|+.+.+..+....            ... +..+++|
T Consensus       116 Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~------------~~~-l~~l~~L  177 (605)
T 1m9s_A          116 LEHNGISDI-----NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD------------IVP-LAGLTKL  177 (605)
T ss_dssp             CTTSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC------------CGG-GTTCTTC
T ss_pred             ecCCCCCCC-----ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCC------------chh-hccCCCC
Confidence            555443221     0012457888888887755433 24566777777665443211            011 5666777


Q ss_pred             eEEEEeCCccccccccccccCCCCCCCCCcceEEEEecc
Q 017981          298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG  336 (363)
Q Consensus       298 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~  336 (363)
                      +.|.|+.+.+   ..+.     .+..+++|+.|++..+.
T Consensus       178 ~~L~Ls~N~i---~~l~-----~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          178 QNLYLSKNHI---SDLR-----ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CEEECCSSCC---CBCG-----GGTTCTTCSEEECCSEE
T ss_pred             CEEECcCCCC---CCCh-----HHccCCCCCEEEccCCc
Confidence            7777777655   3221     23345667777766653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.88  E-value=1.5e-09  Score=105.02  Aligned_cols=217  Identities=16%  Similarity=0.075  Sum_probs=129.9

Q ss_pred             CCcceEEEEecCCCChhhHHHHHHHHHhCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccce
Q 017981           88 GNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKI  167 (363)
Q Consensus        88 ~~l~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~  167 (363)
                      ..++.+.+....-..   +..     ..++++.|+++.+...  .+|.   .+++|++|+|++|.+...+.  .+++|++
T Consensus        61 ~~L~~L~L~~N~l~~---lp~-----~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~  125 (622)
T 3g06_A           61 AHITTLVIPDNNLTS---LPA-----LPPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCK  125 (622)
T ss_dssp             TTCSEEEECSCCCSC---CCC-----CCTTCCEEEECSCCCS--CCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCE
T ss_pred             CCCcEEEecCCCCCC---CCC-----cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCE
Confidence            356777776543111   111     1368999999877642  4555   67899999999998886554  6788999


Q ss_pred             eeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEe
Q 017981          168 LHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIR  247 (363)
Q Consensus       168 L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~  247 (363)
                      |+|.++.++.-     -..+++|++|.+.+|.+.++ ..   ..++|+.|.+.+|.....       ....++|+.|+++
T Consensus       126 L~L~~N~l~~l-----p~~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-------~~~~~~L~~L~Ls  189 (622)
T 3g06_A          126 LWIFGNQLTSL-----PVLPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL-------PMLPSGLQELSVS  189 (622)
T ss_dssp             EECCSSCCSCC-----CCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-------CCCCTTCCEEECC
T ss_pred             EECCCCCCCcC-----CCCCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC-------cccCCCCcEEECC
Confidence            99988866542     22358888888888875543 11   224566666665544321       0223555555555


Q ss_pred             ecCCCcee-------------------eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccc
Q 017981          248 DHGPGLYV-------------------VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMF  308 (363)
Q Consensus       248 ~~~~~~~~-------------------~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~  308 (363)
                      ++....+.                   ...+++|+.+.+..+.-               ..+-..+++|+.|.++++.+ 
T Consensus       190 ~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L---------------~~lp~~l~~L~~L~Ls~N~L-  253 (622)
T 3g06_A          190 DNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL---------------TSLPVLPSELKELMVSGNRL-  253 (622)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC---------------SCCCCCCTTCCEEECCSSCC-
T ss_pred             CCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCcc---------------CcCCCCCCcCcEEECCCCCC-
Confidence            54332211                   01224455554433221               00113456777777777655 


Q ss_pred             cccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          309 ALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       309 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                        ..+       .+.+++|+.|+++.+.-.   .++.-+.++|+|+.|+++.|++
T Consensus       254 --~~l-------p~~~~~L~~L~Ls~N~L~---~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          254 --TSL-------PMLPSGLLSLSVYRNQLT---RLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             --SCC-------CCCCTTCCEEECCSSCCC---SCCGGGGGSCTTCEEECCSCCC
T ss_pred             --CcC-------CcccccCcEEeCCCCCCC---cCCHHHhhccccCEEEecCCCC
Confidence              321       114568999999887542   3444578899999999998864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.87  E-value=1.5e-10  Score=100.60  Aligned_cols=124  Identities=15%  Similarity=0.084  Sum_probs=58.7

Q ss_pred             CCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE-EEecCCcceEE
Q 017981          140 CKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL-NIPSLTLKRLR  218 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l-~i~~~~L~~L~  218 (363)
                      +++|++|.+.++.+...++...+++|++|+|.++.+.+-  . -+..+++|++|.+.+|.+.+. ..- -...++|+.|+
T Consensus        40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence            455566666655555444455556666666665554432  1 244556666666665543332 110 01125566666


Q ss_pred             EEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeee
Q 017981          219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYG  270 (363)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~  270 (363)
                      +.+|........   ....+++|++|.++++......   +..+++|+.+.+..+
T Consensus       116 L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A          116 LVENQLQSLPDG---VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN  167 (272)
T ss_dssp             CTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCcCCccCHH---HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC
Confidence            655543321000   0122455666666555443222   344555555555433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.86  E-value=1.3e-10  Score=103.06  Aligned_cols=209  Identities=15%  Similarity=0.046  Sum_probs=133.4

Q ss_pred             cCCcccccCCcccEEEecccccccC--CCcc--------cCcccceeeeeeEEEccchHHHH-hccCCccceEEEeeeEe
Q 017981          132 ELPHCIYTCKTLEVLKLDMNFFIKT--PPTI--------FFPSAKILHVILNTIDNNFSDWL-FSKCPALEDLSIKGYIY  200 (363)
Q Consensus       132 ~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~--------~~~~L~~L~L~~~~~~~~~l~~l-l~~cp~Le~L~L~~c~~  200 (363)
                      .+|..+...  |++|+|+++.+...  +...        .+++|++|+|.++.+++..-..+ +..+++|++|.|.+|..
T Consensus        56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  133 (312)
T 1wwl_A           56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW  133 (312)
T ss_dssp             CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred             ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence            335434333  88888888777432  2222        58899999999998876422222 37889999999999886


Q ss_pred             CCCceeEEEe----cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-------eeecCCCceEEEEee
Q 017981          201 GTDSVTLNIP----SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-------VVHELHSLTKAVVDY  269 (363)
Q Consensus       201 ~~~~~~l~i~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-------~~~~~~~L~~~~l~~  269 (363)
                      .+....+.--    .++|+.|++.+|........   ....+++|++|+++++...+.       .+..+++|+.+++..
T Consensus       134 ~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~  210 (312)
T 1wwl_A          134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE---QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN  210 (312)
T ss_dssp             SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT---TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT
T ss_pred             cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH---HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC
Confidence            5531111100    27899999999976543111   123578999999998864321       237788999888865


Q ss_pred             eeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHh
Q 017981          270 GIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSR  349 (363)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~  349 (363)
                      +.-        ...+.....++..+++|+.|+++.+.+   ..... .. .+..+++|+.|+++.+.-..   ++.-+. 
T Consensus       211 N~l--------~~~~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~-~~-~~~~l~~L~~L~Ls~N~l~~---ip~~~~-  273 (312)
T 1wwl_A          211 AGM--------ETPSGVCSALAAARVQLQGLDLSHNSL---RDAAG-AP-SCDWPSQLNSLNLSFTGLKQ---VPKGLP-  273 (312)
T ss_dssp             SCC--------CCHHHHHHHHHHTTCCCSEEECTTSCC---CSSCC-CS-CCCCCTTCCEEECTTSCCSS---CCSSCC-
T ss_pred             CcC--------cchHHHHHHHHhcCCCCCEEECCCCcC---Ccccc-hh-hhhhcCCCCEEECCCCccCh---hhhhcc-
Confidence            432        112233456677889999999999876   33221 01 22345789999998875421   111111 


Q ss_pred             CCCCcceEEeeecC
Q 017981          350 MPKLESIVFEEVRM  363 (363)
Q Consensus       350 ~p~L~~L~l~~~~~  363 (363)
                       ++|+.|+++.|++
T Consensus       274 -~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          274 -AKLSVLDLSYNRL  286 (312)
T ss_dssp             -SEEEEEECCSSCC
T ss_pred             -CCceEEECCCCCC
Confidence             7899999988764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.85  E-value=3e-09  Score=101.18  Aligned_cols=213  Identities=16%  Similarity=0.136  Sum_probs=101.0

Q ss_pred             CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981          141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR  218 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~  218 (363)
                      ++|++|+|++|.+...+  .+..+++|++|+|+++.+++-. ...+.++++|++|+|.+|....+ ...  ..++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD-ISVFKFNQELEYLDLSHNKLVKI-SCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE-GGGGTTCTTCCEEECCSSCCCEE-ECC--CCCCCSEEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcC-hHHhhcccCCCEEecCCCceeec-Ccc--ccCCccEEe
Confidence            56666666666655432  2345666666666666554321 22345566666666666654332 111  346666666


Q ss_pred             EEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCc--eEEEEeeeeceeccCCCchhh-------------
Q 017981          219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSL--TKAVVDYGIECILDYDSPEDV-------------  283 (363)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L--~~~~l~~~~~~~~~~~~~~~~-------------  283 (363)
                      +.+|.....  ........+++|++|+++++......+..+++|  +.+.+..+.....+ ..+..+             
T Consensus        97 L~~N~l~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~-~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           97 LSFNAFDAL--PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK-EDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             CCSSCCSSC--CCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSS-CCTTTTTTCCEEEEEEECC
T ss_pred             ccCCccccc--cchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccc-cccccccccccceEEEEec
Confidence            666654321  000111234566666666665544444555555  55555443210000 000000             


Q ss_pred             ----HH-HHHHHhhccCcceEEEEeCCccc-cccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH--hCCCCcc
Q 017981          284 ----AQ-AVVDMLRDIKNIKSLSLSSGTMF-ALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS--RMPKLES  355 (363)
Q Consensus       284 ----~~-~~~~~l~~l~~l~~L~l~~~~~~-~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~--~~p~L~~  355 (363)
                          .. .....+..+++++.|.++.+... ....+....+ .+..+++|+.|++..+.. ....+..+..  .+++|+.
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l-~~~~~~~~~~~~~~~~L~~  251 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET-TWNSFIRILQLVWHTTVWY  251 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE-EHHHHHHHHHHHHTSSCSE
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc-CHHHHHHHHHHhhhCcccE
Confidence                00 00112334666777777665300 0011111111 233556677777776643 3333333332  3568888


Q ss_pred             eEEeeec
Q 017981          356 IVFEEVR  362 (363)
Q Consensus       356 L~l~~~~  362 (363)
                      |+++.++
T Consensus       252 L~l~~n~  258 (520)
T 2z7x_B          252 FSISNVK  258 (520)
T ss_dssp             EEEEEEE
T ss_pred             EEeeccc
Confidence            8888765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.85  E-value=2.5e-10  Score=112.29  Aligned_cols=206  Identities=15%  Similarity=0.068  Sum_probs=139.4

Q ss_pred             CcccccCCcccEEEecccccccC---CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE---
Q 017981          134 PHCIYTCKTLEVLKLDMNFFIKT---PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL---  207 (363)
Q Consensus       134 ~~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l---  207 (363)
                      |..+..+++|++|+|++|.+...   ..+.++++|+.|+|.++.+.+-. ...+..+|+|++|.+.+|...+. ..+   
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~-~~~p~~  475 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNV-DSSPSP  475 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC-TTTTTTCTTCCEEECTTSCCBCT-TCSSCT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC-hhhhhcCcccccchhcccccccc-ccCCcc
Confidence            44556789999999999987632   24568999999999999876542 23366899999999999875322 111   


Q ss_pred             EEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-----------eeecCCCceEEEEeeeeceecc
Q 017981          208 NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-----------VVHELHSLTKAVVDYGIECILD  276 (363)
Q Consensus       208 ~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-----------~~~~~~~L~~~~l~~~~~~~~~  276 (363)
                      ....++|+.|++.+|........   ....+++|++|+++++.....           .+.++++|+.+++..+.-..  
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--  550 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANINDD---MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE--  550 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC--
T ss_pred             cccCCCCCEEECCCCCCCcCChh---hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC--
Confidence            11247899999999876432111   113568999999998765432           25678899998887553211  


Q ss_pred             CCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH-hCCCCcc
Q 017981          277 YDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS-RMPKLES  355 (363)
Q Consensus       277 ~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~-~~p~L~~  355 (363)
                       .        ....+.++++|+.|+++.+.+   ..+..  . .+..+++|+.|++..+.-...  ....+. .+++|+.
T Consensus       551 -i--------~~~~~~~l~~L~~L~Ls~N~l---~~l~~--~-~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~~~L~~  613 (680)
T 1ziw_A          551 -I--------PVEVFKDLFELKIIDLGLNNL---NTLPA--S-VFNNQVSLKSLNLQKNLITSV--EKKVFGPAFRNLTE  613 (680)
T ss_dssp             -C--------CTTTTTTCTTCCEEECCSSCC---CCCCT--T-TTTTCTTCCEEECTTSCCCBC--CHHHHHHHHTTCSE
T ss_pred             -C--------CHHHcccccCcceeECCCCCC---CcCCH--h-HhCCCCCCCEEECCCCcCCcc--ChhHhcccccccCE
Confidence             0        123467889999999998877   43322  1 234667899999988753221  112233 6789999


Q ss_pred             eEEeeecC
Q 017981          356 IVFEEVRM  363 (363)
Q Consensus       356 L~l~~~~~  363 (363)
                      |+++.|++
T Consensus       614 l~l~~N~~  621 (680)
T 1ziw_A          614 LDMRFNPF  621 (680)
T ss_dssp             EECTTCCC
T ss_pred             EEccCCCc
Confidence            99988764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.84  E-value=4.5e-10  Score=92.67  Aligned_cols=126  Identities=13%  Similarity=0.111  Sum_probs=74.0

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .+++++++..+...  .+| .+..+++|++|++++|.+...+....+++|++|++.++.+++... ..+..+++|++|.+
T Consensus        44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEe
Confidence            46777777765542  444 456677788888877766544555677778888887776665322 12556777888877


Q ss_pred             eeeEeCCCceeEEE-ecCCcceEEEEecC-CccccCCceEEEEeccCcceEEEeecCC
Q 017981          196 KGYIYGTDSVTLNI-PSLTLKRLRLELEA-PEEDYITKYKVIIRAPNLEQLYIRDHGP  251 (363)
Q Consensus       196 ~~c~~~~~~~~l~i-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~p~L~~L~l~~~~~  251 (363)
                      .+|...+. ..-.+ ..++|+.|++.+|. ....    . ....+|+|++|.++++..
T Consensus       120 s~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~----~-~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          120 SHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDI----M-PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             CSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCC----G-GGGGCSSCCEEECTTBCC
T ss_pred             cCCccCcH-hHHHHhhCCCCCEEEccCCCCcccc----H-hhcCCCCCCEEECCCCCC
Confidence            77764431 01111 23667777777665 3221    0 113346666666666543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.80  E-value=8.7e-10  Score=105.98  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=48.2

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC---CcccCcccceeeeeeEEEccchHHHHhccCCcc--
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP---PTIFFPSAKILHVILNTIDNNFSDWLFSKCPAL--  190 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L--  190 (363)
                      .+++.|+++.+...  .+|..  .+++|++|+|++|.+...+   .+..+++|++|+|.++.+...++    ..+++|  
T Consensus       100 ~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L  171 (562)
T 3a79_B          100 QDLEYLDVSHNRLQ--NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHL  171 (562)
T ss_dssp             TTCCEEECTTSCCC--EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCE
T ss_pred             CCCCEEECCCCcCC--ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhcee
Confidence            46777777665542  45544  6777888888877766432   34567777778777776655432    233444  


Q ss_pred             ceEEEeeeEe
Q 017981          191 EDLSIKGYIY  200 (363)
Q Consensus       191 e~L~L~~c~~  200 (363)
                      ++|.+.+|..
T Consensus       172 ~~L~L~~n~l  181 (562)
T 3a79_B          172 SCILLDLVSY  181 (562)
T ss_dssp             EEEEEEESSC
T ss_pred             eEEEeecccc
Confidence            6666666543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.79  E-value=4.2e-09  Score=89.51  Aligned_cols=101  Identities=6%  Similarity=-0.008  Sum_probs=51.9

Q ss_pred             CceEEEEEcCCCccccCCc-ccccCCcccEEEecccc-cccCC--CcccCcccceeeeee-EEEccchHHHHhccCCccc
Q 017981          117 NVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNF-FIKTP--PTIFFPSAKILHVIL-NTIDNNFSDWLFSKCPALE  191 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le  191 (363)
                      +++.|++..+..  ..++. .+..+++|++|++++|. +...+  .+..+++|++|+|.+ +.++.-. ...+.++++|+
T Consensus        32 ~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~  108 (239)
T 2xwt_C           32 STQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLK  108 (239)
T ss_dssp             TCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCC
T ss_pred             cccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCC
Confidence            566666665543  23333 34456667777776664 43322  334666667776666 4333211 12245566677


Q ss_pred             eEEEeeeEeCCCceeEEEecCCcc---eEEEEec
Q 017981          192 DLSIKGYIYGTDSVTLNIPSLTLK---RLRLELE  222 (363)
Q Consensus       192 ~L~L~~c~~~~~~~~l~i~~~~L~---~L~l~~~  222 (363)
                      +|.+.+|...+. .. ....++|+   .|++.+|
T Consensus       109 ~L~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          109 FLGIFNTGLKMF-PD-LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             EEEEEEECCCSC-CC-CTTCCBCCSEEEEEEESC
T ss_pred             EEeCCCCCCccc-cc-cccccccccccEEECCCC
Confidence            777666654443 22 11124444   6666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.77  E-value=5.3e-10  Score=89.67  Aligned_cols=134  Identities=22%  Similarity=0.088  Sum_probs=92.4

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      +++++|++..+......+|..+..+++|++|+|++|.+.....+..+++|++|+|+++.+.+. +...+..+++|++|.+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence            468888887766432467777778999999999999887665566889999999999988664 4455667899999999


Q ss_pred             eeeEeCCCcee-EEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981          196 KGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP  251 (363)
Q Consensus       196 ~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  251 (363)
                      .+|.+.+. .. -.+ ..++|+.|++.+|...............+|+|++|+++++..
T Consensus       103 s~N~l~~~-~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          103 SGNKLKDI-STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             BSSSCCSS-GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             cCCccCcc-hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            99876554 21 111 247788888888765432110001223467788877777644

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.76  E-value=3.1e-09  Score=93.28  Aligned_cols=166  Identities=17%  Similarity=0.120  Sum_probs=124.4

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .+++.|.+..+...  .++ .+..+++|++|+|++|.+...+....+++|+.|+|.++.+.+-  .. +..+++|++|.+
T Consensus        46 ~~L~~L~l~~~~i~--~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEEC
T ss_pred             CcccEEEccCCCcc--cCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEEC
Confidence            57899988766542  333 3677999999999999988665577899999999999987653  22 788999999999


Q ss_pred             eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeecee
Q 017981          196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECI  274 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~  274 (363)
                      .+|...+. ..+ ...++|+.|++.+|.....     .....+++|++|+++++..... .+..+++|+.+++..+.-..
T Consensus       120 ~~n~i~~~-~~l-~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          120 EHNGISDI-NGL-VHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             TTSCCCCC-GGG-GGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred             CCCcCCCC-hhh-cCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC
Confidence            99886554 211 1248999999999976532     1124578999999999866533 37788999999887654311


Q ss_pred             ccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981          275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  307 (363)
                                  + ..+..+++|+.|.++++.+
T Consensus       193 ------------l-~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          193 ------------L-RALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             ------------C-GGGTTCTTCSEEEEEEEEE
T ss_pred             ------------C-hhhccCCCCCEEECcCCcc
Confidence                        1 1277899999999998765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.75  E-value=2e-09  Score=91.61  Aligned_cols=192  Identities=12%  Similarity=0.041  Sum_probs=123.6

Q ss_pred             CcccEEEecccccccCC--CcccCcccceeeeeeEE-EccchHHHHhccCCccceEEEee-eEeCCCceeEEEecCCcce
Q 017981          141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNT-IDNNFSDWLFSKCPALEDLSIKG-YIYGTDSVTLNIPSLTLKR  216 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~-c~~~~~~~~l~i~~~~L~~  216 (363)
                      ++|++|+++++.+...+  .+..+++|++|+|.++. ++.-. ...+.++++|++|.+.+ +.............++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            48999999999887543  35689999999999986 53321 12367899999999998 5443321112234589999


Q ss_pred             EEEEecCCccccCCceEEEEeccCcc---eEEEeec-CCCcee---eecCCCce-EEEEeeeeceeccCCCchhhHHHHH
Q 017981          217 LRLELEAPEEDYITKYKVIIRAPNLE---QLYIRDH-GPGLYV---VHELHSLT-KAVVDYGIECILDYDSPEDVAQAVV  288 (363)
Q Consensus       217 L~l~~~~~~~~~~~~~~~~~~~p~L~---~L~l~~~-~~~~~~---~~~~~~L~-~~~l~~~~~~~~~~~~~~~~~~~~~  288 (363)
                      |++.+|.....    .. ...+++|+   +|+++++ ....+.   +..+++|+ .+.+....-..   .        ..
T Consensus       110 L~l~~n~l~~l----p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~---i--------~~  173 (239)
T 2xwt_C          110 LGIFNTGLKMF----PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS---V--------QG  173 (239)
T ss_dssp             EEEEEECCCSC----CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE---E--------CT
T ss_pred             EeCCCCCCccc----cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc---c--------CH
Confidence            99999976532    11 23456676   9999988 554433   55677888 87775443211   0        01


Q ss_pred             HHhhccCcceEEEEeCCc-cccccccccccCCCCCCC-CCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeee
Q 017981          289 DMLRDIKNIKSLSLSSGT-MFALDRLDYANDHSFPTF-PFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEV  361 (363)
Q Consensus       289 ~~l~~l~~l~~L~l~~~~-~~~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  361 (363)
                      ..+.. ++|+.|+++++. +   ..+..  . .+..+ ++|+.|+++.+.-...   ..  ..+++|+.|.+..+
T Consensus       174 ~~~~~-~~L~~L~L~~n~~l---~~i~~--~-~~~~l~~~L~~L~l~~N~l~~l---~~--~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          174 YAFNG-TKLDAVYLNKNKYL---TVIDK--D-AFGGVYSGPSLLDVSQTSVTAL---PS--KGLEHLKELIARNT  236 (239)
T ss_dssp             TTTTT-CEEEEEECTTCTTC---CEECT--T-TTTTCSBCCSEEECTTCCCCCC---CC--TTCTTCSEEECTTC
T ss_pred             hhcCC-CCCCEEEcCCCCCc---ccCCH--H-HhhccccCCcEEECCCCccccC---Ch--hHhccCceeeccCc
Confidence            12333 689999998884 5   33322  1 33456 7899999987653221   11  15788888887643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.75  E-value=9.2e-10  Score=96.55  Aligned_cols=198  Identities=13%  Similarity=0.020  Sum_probs=105.2

Q ss_pred             cccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981          137 IYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR  216 (363)
Q Consensus       137 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~  216 (363)
                      +.++++|+++++.++.+...|.. -.++|+.|+|.++.++.-. ...+..+++|++|.|.+|..... ... ...++|+.
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCE
Confidence            34466677777777666644322 2356777777777654331 22355667777777777654332 111 12367777


Q ss_pred             EEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhc
Q 017981          217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD  293 (363)
Q Consensus       217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  293 (363)
                      |++.+|.....    .......++|++|.++++......   +..+++|+.+.+..+.-..   .        ....+..
T Consensus        82 L~Ls~N~l~~l----~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~---~--------~~~~~~~  146 (290)
T 1p9a_G           82 LDLSHNQLQSL----PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---L--------PPGLLTP  146 (290)
T ss_dssp             EECCSSCCSSC----CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---C--------CTTTTTT
T ss_pred             EECCCCcCCcC----chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc---c--------Chhhccc
Confidence            77777655321    111134567777777766554332   4556667766665432110   0        1223455


Q ss_pred             cCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       294 l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      +++|+.|.++.+.+   ..+..  . .+..+++|+.|++..+.-.   .++.-+...++|+.|.+..|.
T Consensus       147 l~~L~~L~L~~N~l---~~l~~--~-~~~~l~~L~~L~L~~N~l~---~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          147 TPKLEKLSLANNNL---TELPA--G-LLNGLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CTTCCEEECTTSCC---SCCCT--T-TTTTCTTCCEEECCSSCCC---CCCTTTTTTCCCSEEECCSCC
T ss_pred             ccCCCEEECCCCcC---CccCH--H-HhcCcCCCCEEECCCCcCC---ccChhhcccccCCeEEeCCCC
Confidence            66777777776655   32221  1 2234566777777665432   122223345567777666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.73  E-value=2.4e-09  Score=92.49  Aligned_cols=147  Identities=19%  Similarity=0.126  Sum_probs=95.3

Q ss_pred             cccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981          137 IYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR  216 (363)
Q Consensus       137 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~  216 (363)
                      +..+++|++|++++|.+...++...+++|+.|+|+++.+.+-.  . +..+++|++|.+.+|...+. ..+..  ++|+.
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l-~~~~~--~~L~~  110 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNL-NGIPS--ACLSR  110 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCC-TTCCC--SSCCE
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCc-Ccccc--CcccE
Confidence            4557888888888887776666677888888888888776542  2 67888888888888876554 22211  78888


Q ss_pred             EEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccC
Q 017981          217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK  295 (363)
Q Consensus       217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  295 (363)
                      |++.+|.....    . ....+++|+.|+++++..... .+..+++|+.+.+..+.-..            . ..+..++
T Consensus       111 L~L~~N~l~~~----~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~------------~-~~l~~l~  172 (263)
T 1xeu_A          111 LFLDNNELRDT----D-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN------------T-GGLTRLK  172 (263)
T ss_dssp             EECCSSCCSBS----G-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB------------C-TTSTTCC
T ss_pred             EEccCCccCCC----h-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc------------h-HHhccCC
Confidence            88888865432    1 123467788888877655432 24456666666554433211            1 3355566


Q ss_pred             cceEEEEeCCcc
Q 017981          296 NIKSLSLSSGTM  307 (363)
Q Consensus       296 ~l~~L~l~~~~~  307 (363)
                      +|+.|.++++.+
T Consensus       173 ~L~~L~l~~N~~  184 (263)
T 1xeu_A          173 KVNWIDLTGQKC  184 (263)
T ss_dssp             CCCEEEEEEEEE
T ss_pred             CCCEEeCCCCcc
Confidence            777777766544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.67  E-value=5.2e-10  Score=87.82  Aligned_cols=108  Identities=19%  Similarity=0.112  Sum_probs=77.8

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .++++|++..+......+|..+..+++|++|++++|.+........+++|++|+|+++.+.+. +...+..+++|++|.+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence            468888887665432367777778999999999999887665666889999999999988664 4556677899999999


Q ss_pred             eeeEeCCCcee-EEE-ecCCcceEEEEecCCc
Q 017981          196 KGYIYGTDSVT-LNI-PSLTLKRLRLELEAPE  225 (363)
Q Consensus       196 ~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~~~  225 (363)
                      .+|.+.+. .. -.+ ..++|+.|++.+|...
T Consensus        96 s~N~i~~~-~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           96 SGNKIKDL-STIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             TTSCCCSH-HHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CCCcCCCh-HHHHHHhhCCCCCEEeCcCCccc
Confidence            99875543 11 111 2367777777776543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.66  E-value=3e-09  Score=102.56  Aligned_cols=166  Identities=17%  Similarity=0.097  Sum_probs=122.8

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .+++.|.++.+..  ..++ .+..+++|+.|+|++|.+...+....+++|+.|+|.++.+.+-.   -+..+++|++|.|
T Consensus        43 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCC--CCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCC--CCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEe
Confidence            5788887765553  2333 46779999999999998886666778999999999999876532   3678999999999


Q ss_pred             eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeecee
Q 017981          196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECI  274 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~  274 (363)
                      .+|.+.+. .. -...++|+.|.+.+|.....     .....+++|+.|.++++..... .+..+++|+.+.+..+....
T Consensus       117 s~N~l~~l-~~-l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          117 EHNGISDI-NG-LVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             TTSCCCCC-GG-GGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred             cCCCCCCC-cc-ccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC
Confidence            99886554 22 11248999999999876532     1224579999999999876533 37788999999887654311


Q ss_pred             ccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981          275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  307 (363)
                                  + ..+..+++|+.|.++++.+
T Consensus       190 ------------l-~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          190 ------------L-RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             ------------C-GGGTTCTTCSEEECCSEEE
T ss_pred             ------------C-hHHccCCCCCEEEccCCcC
Confidence                        1 2377899999999998765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.66  E-value=1.5e-08  Score=94.61  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=36.9

Q ss_pred             cccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981          137 IYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR  216 (363)
Q Consensus       137 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~  216 (363)
                      +..+++|++|++++|.+...+.  ..++|++|++.++.+..  +.. +..+++|++|.+.+|...+. ..   ..++|+.
T Consensus       191 ~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~  261 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLKKLPD--LPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKTL-PD---LPPSLEA  261 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSC-CS---CCTTCCE
T ss_pred             ccCCCCCCEEECCCCcCCcCCC--CcCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCcc-cc---cccccCE
Confidence            3344555555555544443221  11345555555554431  111 44566666666666654433 11   1255666


Q ss_pred             EEEEecCC
Q 017981          217 LRLELEAP  224 (363)
Q Consensus       217 L~l~~~~~  224 (363)
                      |++.+|..
T Consensus       262 L~l~~N~l  269 (454)
T 1jl5_A          262 LNVRDNYL  269 (454)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCcc
Confidence            66665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.66  E-value=5.3e-09  Score=99.95  Aligned_cols=185  Identities=12%  Similarity=0.061  Sum_probs=125.6

Q ss_pred             hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      ..+++.|++..+...  .+|..++  ++|++|+|++|.+...|  ..+++|++|+|.++.+++  +.. +.  .+|++|.
T Consensus        58 ~~~L~~L~Ls~n~L~--~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~  126 (571)
T 3cvr_A           58 INQFSELQLNRLNLS--SLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLD  126 (571)
T ss_dssp             HTTCSEEECCSSCCS--CCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEE
T ss_pred             cCCccEEEeCCCCCC--ccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEE
Confidence            458999999876643  4776553  88999999999988656  668999999999998765  333 32  3999999


Q ss_pred             EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeeecee
Q 017981          195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECI  274 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~  274 (363)
                      |.+|.+.++ ..   ..++|+.|++.+|.....    ..   ..++|++|.++++....+.. -.++|+.+++..+.-..
T Consensus       127 Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l----p~---~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          127 VDNNQLTML-PE---LPALLEYINADNNQLTML----PE---LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLES  194 (571)
T ss_dssp             CCSSCCSCC-CC---CCTTCCEEECCSSCCSCC----CC---CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSS
T ss_pred             CCCCcCCCC-CC---cCccccEEeCCCCccCcC----CC---cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCCc
Confidence            999987776 33   568999999999986532    11   56899999999987654322 11678888776553211


Q ss_pred             ccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC
Q 017981          275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA  337 (363)
Q Consensus       275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  337 (363)
                         +..  +..   .+....+.++.|+++++.+   ..+..    .+..+++|+.|+++++.-
T Consensus       195 ---lp~--~~~---~L~~~~~~L~~L~Ls~N~l---~~lp~----~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          195 ---LPA--VPV---RNHHSEETEIFFRCRENRI---THIPE----NILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             ---CCC--CC-----------CCEEEECCSSCC---CCCCG----GGGGSCTTEEEECCSSSC
T ss_pred             ---hhh--HHH---hhhcccccceEEecCCCcc---eecCH----HHhcCCCCCEEEeeCCcC
Confidence               100  111   2223334459999999877   43332    233477899999988764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.65  E-value=6.2e-10  Score=96.22  Aligned_cols=166  Identities=10%  Similarity=0.028  Sum_probs=117.2

Q ss_pred             cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981          139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR  218 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~  218 (363)
                      .+.+++.+.++++.+.+.+....+++|+.|++.++.+.+-.   -+..+++|++|.+.+|...+. .. -...++|+.|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence            35667777888877775566678999999999999876532   367899999999999987766 33 11248999999


Q ss_pred             EEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcc
Q 017981          219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNI  297 (363)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l  297 (363)
                      +.+|...... .   +..  ++|++|.++++..... .+..+++|+.+++..+.-..            + ..+..+++|
T Consensus        92 L~~N~l~~l~-~---~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~------------~-~~l~~l~~L  152 (263)
T 1xeu_A           92 VNRNRLKNLN-G---IPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS------------I-VMLGFLSKL  152 (263)
T ss_dssp             CCSSCCSCCT-T---CCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB------------C-GGGGGCTTC
T ss_pred             CCCCccCCcC-c---ccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC------------C-hHHccCCCC
Confidence            9999765431 1   111  8999999999866543 35677888888776443211            1 146778888


Q ss_pred             eEEEEeCCccccccccccccCCCCCCCCCcceEEEEecc
Q 017981          298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG  336 (363)
Q Consensus       298 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~  336 (363)
                      +.|.++++.+   ..+    . .+..+++|+.|++.++.
T Consensus       153 ~~L~L~~N~i---~~~----~-~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          153 EVLDLHGNEI---TNT----G-GLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CEEECTTSCC---CBC----T-TSTTCCCCCEEEEEEEE
T ss_pred             CEEECCCCcC---cch----H-HhccCCCCCEEeCCCCc
Confidence            8888888766   333    1 45567778888888764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.60  E-value=2.1e-08  Score=88.68  Aligned_cols=177  Identities=11%  Similarity=0.012  Sum_probs=97.6

Q ss_pred             CCceEEEEEcCCCccccCC----cccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccc-hHH--HHhcc
Q 017981          116 RNVREIEISLNDDECIELP----HCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNN-FSD--WLFSK  186 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~----~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~-~l~--~ll~~  186 (363)
                      .++++|+++.+.... ..+    ..+..+++|++|+|++|.+...+  .+..+++|++|+|+++.+.+. ++.  ..+..
T Consensus       117 ~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  195 (310)
T 4glp_A          117 LALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK  195 (310)
T ss_dssp             BCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred             CCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence            467777776655321 111    12235777777777777765432  234677777777777765432 221  11246


Q ss_pred             CCccceEEEeeeEeCCCceeE----EEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCc
Q 017981          187 CPALEDLSIKGYIYGTDSVTL----NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSL  262 (363)
Q Consensus       187 cp~Le~L~L~~c~~~~~~~~l----~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L  262 (363)
                      +|+|++|.|.+|..... ...    .-..++|+.|++++|................++|++|+++++....+...-.++|
T Consensus       196 l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L  274 (310)
T 4glp_A          196 FPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKL  274 (310)
T ss_dssp             SCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCC
T ss_pred             CCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCC
Confidence            77777777777765432 111    1123677777777776543210101011122677777777766553332223567


Q ss_pred             eEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981          263 TKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  307 (363)
                      +.+++..+.-..            + ..+..+++|+.|.++++.+
T Consensus       275 ~~L~Ls~N~l~~------------~-~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          275 RVLDLSSNRLNR------------A-PQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SCEECCSCCCCS------------C-CCTTSCCCCSCEECSSTTT
T ss_pred             CEEECCCCcCCC------------C-chhhhCCCccEEECcCCCC
Confidence            777665443211            0 1145678888888888765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.60  E-value=7.4e-09  Score=96.68  Aligned_cols=75  Identities=16%  Similarity=0.097  Sum_probs=50.6

Q ss_pred             CcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEE
Q 017981          141 KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLE  220 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~  220 (363)
                      ++|++|++++|.+...+....+++|++|++.++.+.+-  .   ...++|++|.+.+|...+. ..   ..++|+.|++.
T Consensus       215 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l--~---~~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls  285 (454)
T 1jl5_A          215 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL--P---DLPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVS  285 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC--C---SCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECC
T ss_pred             CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcc--c---ccccccCEEECCCCccccc-Cc---ccCcCCEEECc
Confidence            57888888888777556666788888888888766531  1   1347788888877765543 11   12667777777


Q ss_pred             ecCC
Q 017981          221 LEAP  224 (363)
Q Consensus       221 ~~~~  224 (363)
                      +|..
T Consensus       286 ~N~l  289 (454)
T 1jl5_A          286 ENIF  289 (454)
T ss_dssp             SSCC
T ss_pred             CCcc
Confidence            7654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.59  E-value=5.2e-08  Score=93.09  Aligned_cols=156  Identities=15%  Similarity=-0.014  Sum_probs=106.5

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .+++.|+++.+...  .+|   ..+++|++|+|++|.+...|..  ..+|++|+|.++.+++  +..   .+++|++|.|
T Consensus        80 ~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~l--~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPEL--PASLKHLDVDNNQLTM--LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcchh--hcCCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence            57999999776643  555   3478999999999988865542  2289999999987765  222   6899999999


Q ss_pred             eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCc-------eEEEEe
Q 017981          196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSL-------TKAVVD  268 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L-------~~~~l~  268 (363)
                      .+|.+.++ ..   ..++|+.|++++|.....    ..  +. ++|++|+++++....+.. -..+|       +.+++.
T Consensus       148 s~N~l~~l-p~---~l~~L~~L~Ls~N~L~~l----p~--l~-~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls  215 (571)
T 3cvr_A          148 DNNQLTML-PE---LPTSLEVLSVRNNQLTFL----PE--LP-ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCR  215 (571)
T ss_dssp             CSSCCSCC-CC---CCTTCCEEECCSSCCSCC----CC--CC-TTCCEEECCSSCCSSCCC-CC--------CCEEEECC
T ss_pred             CCCccCcC-CC---cCCCcCEEECCCCCCCCc----ch--hh-CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecC
Confidence            99887665 33   457899999999976542    11  12 899999999886653322 11145       666665


Q ss_pred             eeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981          269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  307 (363)
                      .+.-..            +...+..+++|+.|.++++.+
T Consensus       216 ~N~l~~------------lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          216 ENRITH------------IPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             SSCCCC------------CCGGGGGSCTTEEEECCSSSC
T ss_pred             CCccee------------cCHHHhcCCCCCEEEeeCCcC
Confidence            433210            223344588999999999877

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.57  E-value=1.5e-08  Score=86.71  Aligned_cols=151  Identities=14%  Similarity=0.023  Sum_probs=92.0

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      .+++.|++..+... ...+..+..+++|++|+|++|.+...+.  +..+++|++|+|.++.+..-. ...+..+++|++|
T Consensus        35 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L  112 (251)
T 3m19_A           35 ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKL  112 (251)
T ss_dssp             TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEE
T ss_pred             CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEE
Confidence            36777777655431 1222345567888888888887765432  457788888888888765431 2345677888888


Q ss_pred             EEeeeEeCCCceeE-EEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEee
Q 017981          194 SIKGYIYGTDSVTL-NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDY  269 (363)
Q Consensus       194 ~L~~c~~~~~~~~l-~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~  269 (363)
                      .|.+|.+.+. ..- ....++|+.|++.+|........   ....+++|++|+++++.....   .+..+++|+.+.+..
T Consensus       113 ~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          113 YLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             ECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             EcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            8888765443 111 11246788888887765432110   112357788888887765433   245667777777665


Q ss_pred             eec
Q 017981          270 GIE  272 (363)
Q Consensus       270 ~~~  272 (363)
                      +..
T Consensus       189 N~~  191 (251)
T 3m19_A          189 NQF  191 (251)
T ss_dssp             CCB
T ss_pred             Cce
Confidence            543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.56  E-value=8.9e-09  Score=88.23  Aligned_cols=126  Identities=13%  Similarity=0.047  Sum_probs=75.9

Q ss_pred             ceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          118 VREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       118 l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .+++++....  -..+|..+.  ++|++|+|+++.+...+  .+..+++|++|+|.++.+.+-. ...+..+++|++|.|
T Consensus        16 ~~~l~~~~~~--l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           16 KKEVDCQGKS--LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGL   90 (251)
T ss_dssp             GTEEECTTCC--CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred             CeEEecCCCC--ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEEC
Confidence            4445443332  234554433  68899999998887543  3567899999999998776542 234677899999999


Q ss_pred             eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981          196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP  251 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  251 (363)
                      .+|.+...........++|+.|++.+|.........   ...+++|++|.++++..
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV---FDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhH---hccCCcccEEECcCCcC
Confidence            988754430001112367777777777553221110   12346666666666544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.52  E-value=4.3e-08  Score=88.36  Aligned_cols=153  Identities=16%  Similarity=0.115  Sum_probs=87.1

Q ss_pred             hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEE-EeccCcceEEEeec---CCCc-
Q 017981          179 FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVI-IRAPNLEQLYIRDH---GPGL-  253 (363)
Q Consensus       179 ~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~p~L~~L~l~~~---~~~~-  253 (363)
                      ++..++..+|+|++|.|.+|.  +. ....+..++|++|.+..|.....  ....+. ..+|+|++|.++..   .... 
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~--~l-~l~~~~~~~L~~L~L~~~~l~~~--~l~~l~~~~lp~L~~L~L~~~~~~~~~~~  237 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTN--NL-SIGKKPRPNLKSLEIISGGLPDS--VVEDILGSDLPNLEKLVLYVGVEDYGFDG  237 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCB--TC-BCCSCBCTTCSEEEEECSBCCHH--HHHHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred             CHHHHHhcCCCCcEEEEeCCC--Cc-eeccccCCCCcEEEEecCCCChH--HHHHHHHccCCCCcEEEEeccccccccch
Confidence            467888999999999999863  12 11123478999999987764322  111111 25799999988631   1111 


Q ss_pred             -e-----ee--ecCCCceEEEEeeeeceeccCCCchhhHHHHHHHh---hccCcceEEEEeCCccccccccccccCCCCC
Q 017981          254 -Y-----VV--HELHSLTKAVVDYGIECILDYDSPEDVAQAVVDML---RDIKNIKSLSLSSGTMFALDRLDYANDHSFP  322 (363)
Q Consensus       254 -~-----~~--~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l---~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~  322 (363)
                       .     .+  ..+|+|+.+.+..+..           .+.....+   ..+++|+.|.|+.+.+.+ ........ .++
T Consensus       238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~i-----------~~~~~~~la~a~~~~~L~~LdLs~n~L~d-~G~~~L~~-~L~  304 (362)
T 2ra8_A          238 DMNVFRPLFSKDRFPNLKWLGIVDAEE-----------QNVVVEMFLESDILPQLETMDISAGVLTD-EGARLLLD-HVD  304 (362)
T ss_dssp             CGGGTGGGSCTTTCTTCCEEEEESCTT-----------HHHHHHHHHHCSSGGGCSEEECCSSCCBH-HHHHHHHT-THH
T ss_pred             hHHHHHHHHhcCCCCCcCEEeCCCCCC-----------chHHHHHHHhCccCCCCCEEECCCCCCCh-HHHHHHHh-hcc
Confidence             1     11  3467888887764321           11111122   246788888887765411 10000111 234


Q ss_pred             CCCCcceEEEEeccCCChHHHHHHHHhC
Q 017981          323 TFPFLNRLEVEGVGACGWLSLAHIFSRM  350 (363)
Q Consensus       323 ~~~~L~~L~l~~~~~~~~~~l~~ll~~~  350 (363)
                      .+++|+.|++..|. .+..++..+-+..
T Consensus       305 ~l~~L~~L~L~~n~-i~d~~~~~l~~al  331 (362)
T 2ra8_A          305 KIKHLKFINMKYNY-LSDEMKKELQKSL  331 (362)
T ss_dssp             HHTTCSEEECCSBB-CCHHHHHHHHHHC
T ss_pred             cCCcceEEECCCCc-CCHHHHHHHHHHc
Confidence            56678888887764 4666666665544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.50  E-value=1.5e-07  Score=91.41  Aligned_cols=130  Identities=18%  Similarity=0.099  Sum_probs=74.3

Q ss_pred             CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      ..+++|+++....  ..+++ .+.++++|++|+|++|.+... + .+.++++|++|+|.++.++.-. ...+.++++|++
T Consensus        52 ~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCCCE
Confidence            3677777765543  24443 455677888888887776643 2 2456777888888877654321 234667778888


Q ss_pred             EEEeeeEeCCCceeEEEe-cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981          193 LSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP  251 (363)
Q Consensus       193 L~L~~c~~~~~~~~l~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  251 (363)
                      |.|.+|...++ ....+. .++|+.|++.+|.....  ........+++|++|.++++..
T Consensus       129 L~Ls~N~l~~l-~~~~~~~L~~L~~L~Ls~N~l~~~--~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          129 LVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             EECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCC-ChhhhhcCcccCeeccccCccccC--CCchhhccchhhhhhcccCccc
Confidence            88877765444 222222 36677777776654321  0011112345666666665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.46  E-value=9.7e-08  Score=86.03  Aligned_cols=176  Identities=17%  Similarity=0.143  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHhcCC-CCcceEEEEecCCC--Ch-hhHHHHHHH-HHhCCceEEEEEcCCCc--------cccCCcccccC
Q 017981           74 RFENFVHRVLLSAS-GNINKFSLRCCGLV--DS-SRLKLWVSF-ATMRNVREIEISLNDDE--------CIELPHCIYTC  140 (363)
Q Consensus        74 ~~~~~i~~~l~~~~-~~l~~l~l~~~~~~--~~-~~~~~wi~~-~~~~~l~~L~l~~~~~~--------~~~l~~~~~~~  140 (363)
                      .+.+.+.+++.... ..++.+.+......  .. ..+..+... ...+++++|.+......        ...+...+..+
T Consensus        92 ~~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~  171 (362)
T 2ra8_A           92 EGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM  171 (362)
T ss_dssp             TTCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC
T ss_pred             cHHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcC
Confidence            44456777777777 55778877754311  11 223333321 12359999988432211        11244455668


Q ss_pred             CcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHh-ccCCccceEEEeeeE--eCCC------ceeEEE-e
Q 017981          141 KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLF-SKCPALEDLSIKGYI--YGTD------SVTLNI-P  210 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll-~~cp~Le~L~L~~c~--~~~~------~~~l~i-~  210 (363)
                      ++|++|+|+++.....+. ...++|++|+|..+.++++++..+. ..+|+|++|.|..+.  ..+.      ...+.. .
T Consensus       172 P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~  250 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR  250 (362)
T ss_dssp             TTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred             CCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence            999999998874222233 3489999999999888777776665 379999999996432  1111      001111 2


Q ss_pred             cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981          211 SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG  250 (363)
Q Consensus       211 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  250 (363)
                      .|+|+.|.+.+|...+.......-...+|+|++|+++.+.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            4788888888776542100000000135677777776543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.42  E-value=6.7e-08  Score=77.23  Aligned_cols=82  Identities=20%  Similarity=0.027  Sum_probs=50.1

Q ss_pred             CCcccEEEecccccc--cCCC-cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcce
Q 017981          140 CKTLEVLKLDMNFFI--KTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR  216 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~--~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~  216 (363)
                      .++|++|++++|.+.  ..+. +..+++|+.|+|.++.+.+-   ..+..+++|++|.+.+|.+.+......-..++|+.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            367888888888776  3333 35778888888888776543   44667778888888877654420111111355555


Q ss_pred             EEEEecCC
Q 017981          217 LRLELEAP  224 (363)
Q Consensus       217 L~l~~~~~  224 (363)
                      |++.+|..
T Consensus       100 L~Ls~N~l  107 (168)
T 2ell_A          100 LNLSGNKL  107 (168)
T ss_dssp             EECBSSSC
T ss_pred             EeccCCcc
Confidence            55555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.37  E-value=2.9e-07  Score=82.83  Aligned_cols=217  Identities=14%  Similarity=0.065  Sum_probs=116.9

Q ss_pred             CCceEEEEEcCCCccccCCcc-cccCCcccEEEecccccccC--C-CcccCccccee-eeeeEEEccchHHHHhccCCcc
Q 017981          116 RNVREIEISLNDDECIELPHC-IYTCKTLEVLKLDMNFFIKT--P-PTIFFPSAKIL-HVILNTIDNNFSDWLFSKCPAL  190 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~--~-~~~~~~~L~~L-~L~~~~~~~~~l~~ll~~cp~L  190 (363)
                      .++++|+++.+..  ..+|.. +.++++|++|+|++|.+...  + .+.++++|+++ .+.++.+..- -...+..+++|
T Consensus        30 ~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred             CCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence            5789999987764  356654 55699999999999976432  2 23467776654 4444433221 12346788999


Q ss_pred             ceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeec--CCCceEEEEe
Q 017981          191 EDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHE--LHSLTKAVVD  268 (363)
Q Consensus       191 e~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~--~~~L~~~~l~  268 (363)
                      ++|.+.+|..............++..|.+.++..... .....+......++.|.++++....+....  ..+|+.+.+.
T Consensus       107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~  185 (350)
T 4ay9_X          107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS  185 (350)
T ss_dssp             CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred             ccccccccccccCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence            9999999886544122223346677777766532110 000001111245778888887665433222  2334444332


Q ss_pred             eeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH
Q 017981          269 YGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS  348 (363)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~  348 (363)
                      ....  ....        ....+..+++|+.|+++++.+   ..+..      ..|.+|++|.+..+....  .++. +.
T Consensus       186 ~~n~--l~~i--------~~~~f~~l~~L~~LdLs~N~l---~~lp~------~~~~~L~~L~~l~~~~l~--~lP~-l~  243 (350)
T 4ay9_X          186 DNNN--LEEL--------PNDVFHGASGPVILDISRTRI---HSLPS------YGLENLKKLRARSTYNLK--KLPT-LE  243 (350)
T ss_dssp             TCTT--CCCC--------CTTTTTTEECCSEEECTTSCC---CCCCS------SSCTTCCEEECTTCTTCC--CCCC-TT
T ss_pred             cCCc--ccCC--------CHHHhccCcccchhhcCCCCc---CccCh------hhhccchHhhhccCCCcC--cCCC-ch
Confidence            1111  0011        123467888999999998876   33211      134556655554443211  1111 34


Q ss_pred             hCCCCcceEE
Q 017981          349 RMPKLESIVF  358 (363)
Q Consensus       349 ~~p~L~~L~l  358 (363)
                      ..++|+.+++
T Consensus       244 ~l~~L~~l~l  253 (350)
T 4ay9_X          244 KLVALMEASL  253 (350)
T ss_dssp             TCCSCCEEEC
T ss_pred             hCcChhhCcC
Confidence            4555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.34  E-value=5e-08  Score=80.32  Aligned_cols=87  Identities=21%  Similarity=0.130  Sum_probs=59.7

Q ss_pred             cCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-
Q 017981          132 ELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-  210 (363)
Q Consensus       132 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-  210 (363)
                      .+|..+..+++|++|+|++|.+...+....+++|+.|+|.++.+..  +...+..+|+|++|.+.+|.+.+. .  .+. 
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l-~--~~~~  113 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL-S--GIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCH-H--HHHH
T ss_pred             hhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcC-C--cccc
Confidence            3444666788899999988888766666678888888888888763  344555678888888888876554 2  111 


Q ss_pred             cCCcceEEEEecC
Q 017981          211 SLTLKRLRLELEA  223 (363)
Q Consensus       211 ~~~L~~L~l~~~~  223 (363)
                      .++|+.|++.+|.
T Consensus       114 l~~L~~L~l~~N~  126 (198)
T 1ds9_A          114 LVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHSSEEEESEEE
T ss_pred             CCCCCEEECCCCc
Confidence            2455555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.33  E-value=1.5e-08  Score=91.88  Aligned_cols=57  Identities=11%  Similarity=-0.012  Sum_probs=35.6

Q ss_pred             HHHHhhccCcceEEEEeCCcccccc--ccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHH
Q 017981          287 VVDMLRDIKNIKSLSLSSGTMFALD--RLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFS  348 (363)
Q Consensus       287 ~~~~l~~l~~l~~L~l~~~~~~~~~--~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~  348 (363)
                      +...+...++|+.|+++++.+.+..  .+..    .+...++|++|+++++.- +..+...+..
T Consensus       203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~----~L~~~~~L~~L~Ls~N~i-~~~g~~~L~~  261 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAYNGAGDTAALALAR----AAREHPSLELLHLYFNEL-SSEGRQVLRD  261 (372)
T ss_dssp             HHHHGGGCSCCCEEECCSSCCCHHHHHHHHH----HHHHCSSCCEEECTTSSC-CHHHHHHHHH
T ss_pred             HHHHHhcCCCcCeEECCCCCCCHHHHHHHHH----HHHhCCCCCEEeccCCCC-CHHHHHHHHH
Confidence            5677778888999999888662110  1111    122446788888888764 6666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.31  E-value=2.4e-08  Score=80.57  Aligned_cols=32  Identities=13%  Similarity=0.012  Sum_probs=16.0

Q ss_pred             eccCcceEEEeecCCCce------eeecCCCceEEEEe
Q 017981          237 RAPNLEQLYIRDHGPGLY------VVHELHSLTKAVVD  268 (363)
Q Consensus       237 ~~p~L~~L~l~~~~~~~~------~~~~~~~L~~~~l~  268 (363)
                      .+|+|++|.++++.....      .+..+|+|+.+++.
T Consensus       111 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A          111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence            345555555555433211      24456666665544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.30  E-value=2.5e-07  Score=77.94  Aligned_cols=125  Identities=18%  Similarity=-0.004  Sum_probs=73.7

Q ss_pred             CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE-EEecCCcceE
Q 017981          141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL-NIPSLTLKRL  217 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l-~i~~~~L~~L  217 (363)
                      ++|++|+|++|.+....  .+..+++|+.|+|.++.+..-. ...+.++++|++|.|.+|.+... ..- .-..++|+.|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeE
Confidence            67777777777766542  2446777777777777663321 23356677777777777764433 111 1123677777


Q ss_pred             EEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeee
Q 017981          218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGI  271 (363)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~  271 (363)
                      ++.+|........    ...+++|++|+++++....+.   +..+++|+.+.+..++
T Consensus       118 ~Ls~N~l~~lp~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          118 FMCCNKLTELPRG----IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             ECCSSCCCSCCTT----GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             eccCCcccccCcc----cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            7777765422111    135577888888877554332   4556777777665554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=1e-07  Score=76.01  Aligned_cols=68  Identities=7%  Similarity=0.030  Sum_probs=42.6

Q ss_pred             cCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEE-EccchHHHHhcc---CCccceEEEeeeE
Q 017981          132 ELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNT-IDNNFSDWLFSK---CPALEDLSIKGYI  199 (363)
Q Consensus       132 ~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~L~~c~  199 (363)
                      .+|......-+|++|++++|.+.+.  ....++++|++|+|++|. +++.++..+...   |++|++|.|.+|.
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            5554333445677777777765421  223467777777777774 555576666552   6677777777765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.28  E-value=2.4e-07  Score=77.55  Aligned_cols=128  Identities=15%  Similarity=0.084  Sum_probs=73.2

Q ss_pred             CcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981          141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR  218 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~  218 (363)
                      ++|+.|+|+++.+...+  .+..+++|+.|+|.++.+..-. ...+.++++|++|.|.+|.+..+........++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            56777777777665432  3456777777777777654321 22355667777777777664433111111236677777


Q ss_pred             EEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeeeec
Q 017981          219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYGIE  272 (363)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~~~  272 (363)
                      +.+|........   ....+++|++|+++++....+.   +..+++|+.+.+..++.
T Consensus       111 L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 LNANKINCLRVD---AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEeCHH---HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            777755432111   1123577888888777554332   45567777777765554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.27  E-value=2.4e-07  Score=78.06  Aligned_cols=130  Identities=15%  Similarity=0.033  Sum_probs=92.5

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      .+++.|+++.+... ...|..+..+++|++|+|++|.+...+.  +..+++|+.|+|+++.++.- ....+..+++|++|
T Consensus        40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeE
Confidence            57888888776642 2234556679999999999998875543  46899999999999987643 13446789999999


Q ss_pred             EEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981          194 SIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP  251 (363)
Q Consensus       194 ~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  251 (363)
                      .|.+|.+..+...+ ...++|+.|++.+|........   ....+++|+.|.++++..
T Consensus       118 ~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          118 FMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHG---AFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             ECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCB
T ss_pred             eccCCcccccCccc-ccCCCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCCc
Confidence            99998865441111 2348999999999976533111   113468999999998754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.26  E-value=1.1e-07  Score=82.42  Aligned_cols=174  Identities=10%  Similarity=0.048  Sum_probs=94.7

Q ss_pred             CCceEEEEEcCCCccccCC-cccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISLNDDECIELP-HCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      .+++.|+++.+..  ..++ ..+..+++|++|+|++|.+...+  .+..+++|++|++.++.+..-. ...+..+++|++
T Consensus        52 ~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  128 (276)
T 2z62_A           52 PELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKE  128 (276)
T ss_dssp             TTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCE
T ss_pred             cCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC-chhcccCCCCCE
Confidence            4677777765543  1233 24455777888888877665432  3456777888887777655431 112566777888


Q ss_pred             EEEeeeEeCCCcee-EEE-ecCCcceEEEEecCCccccCCceEEEEeccCcc----eEEEeecCCCceee--ecCCCceE
Q 017981          193 LSIKGYIYGTDSVT-LNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLE----QLYIRDHGPGLYVV--HELHSLTK  264 (363)
Q Consensus       193 L~L~~c~~~~~~~~-l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~----~L~l~~~~~~~~~~--~~~~~L~~  264 (363)
                      |.+.+|...+. .. -.+ ..++|+.|++.+|.........   ....++|+    +|.++++.......  ....+|+.
T Consensus       129 L~l~~n~l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~  204 (276)
T 2z62_A          129 LNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTD---LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE  204 (276)
T ss_dssp             EECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGG---GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred             EECcCCcccee-cCchhhccCCCCCEEECCCCCCCcCCHHH---hhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence            88877765432 10 011 1367777877777543210000   01233444    56666655443221  12235666


Q ss_pred             EEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981          265 AVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       265 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  307 (363)
                      +++..+.-..   .        ....+..+++++.|+++++.+
T Consensus       205 L~L~~n~l~~---~--------~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          205 LALDTNQLKS---V--------PDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             EECCSSCCSC---C--------CTTTTTTCCSCCEEECCSSCB
T ss_pred             EECCCCceee---c--------CHhHhcccccccEEEccCCcc
Confidence            6655433110   0        123356677888888887766

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.26  E-value=5.6e-08  Score=78.38  Aligned_cols=133  Identities=11%  Similarity=-0.033  Sum_probs=68.7

Q ss_pred             cccCCcccEEEecccccccCCCcccCc-ccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcc
Q 017981          137 IYTCKTLEVLKLDMNFFIKTPPTIFFP-SAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLK  215 (363)
Q Consensus       137 ~~~~~~L~~L~L~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~  215 (363)
                      +..+++|++|++++|.+...+....+. +|+.|+|+++.+.+-   .-+..+++|++|.+.+|.+.+. .. .       
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~-~~-~-------   82 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRI-GE-G-------   82 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEE-CS-C-------
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccccc-Cc-c-------
Confidence            345667777777777666444444433 667777766655432   2345566666666666543221 00 0       


Q ss_pred             eEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce----eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHh
Q 017981          216 RLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY----VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDML  291 (363)
Q Consensus       216 ~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  291 (363)
                                        +...+|+|++|+++++....+    .+..+++|+.+.+..+.-..        .+..-...+
T Consensus        83 ------------------~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~--------~~~~~~~~~  136 (176)
T 1a9n_A           83 ------------------LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN--------KKHYRLYVI  136 (176)
T ss_dssp             ------------------HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG--------STTHHHHHH
T ss_pred             ------------------hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC--------cHhHHHHHH
Confidence                              001233444444444333211    24566777777766544211        111123356


Q ss_pred             hccCcceEEEEeCCcc
Q 017981          292 RDIKNIKSLSLSSGTM  307 (363)
Q Consensus       292 ~~l~~l~~L~l~~~~~  307 (363)
                      ..+++|+.|+++.+..
T Consensus       137 ~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          137 YKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHCTTCSEETTEECCH
T ss_pred             HHCCccceeCCCcCCH
Confidence            7777888887777655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.25  E-value=1e-07  Score=74.53  Aligned_cols=80  Identities=19%  Similarity=0.041  Sum_probs=51.0

Q ss_pred             CCcccEEEecccccc--cCCC-cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCC-CceeEEEecCCcc
Q 017981          140 CKTLEVLKLDMNFFI--KTPP-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGT-DSVTLNIPSLTLK  215 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~--~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~l~i~~~~L~  215 (363)
                      .++|++|++++|.+.  ..+. ...+++|+.|+|.++.+.+-   ..+..+++|++|.+.+|...+ . .......++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~   91 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPNLT   91 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCT-HHHHHHCTTCC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchH-HHHhhhCCCCC
Confidence            467888888888776  3333 35788888888888876553   446677888888888876544 2 11111234555


Q ss_pred             eEEEEecC
Q 017981          216 RLRLELEA  223 (363)
Q Consensus       216 ~L~l~~~~  223 (363)
                      .|++.+|.
T Consensus        92 ~L~ls~N~   99 (149)
T 2je0_A           92 HLNLSGNK   99 (149)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCCc
Confidence            55555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.22  E-value=3.2e-07  Score=76.82  Aligned_cols=127  Identities=15%  Similarity=0.044  Sum_probs=60.5

Q ss_pred             cccEEEecccccccCC--C-cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981          142 TLEVLKLDMNFFIKTP--P-TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR  218 (363)
Q Consensus       142 ~L~~L~L~~~~~~~~~--~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~  218 (363)
                      .+++|+|+++.+...+  . +..+++|+.|+|.++.+++-. ...+.++++|++|.|.+|.+.+.........++|++|+
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            3455555555554321  1 335555555555555443221 11244555556665555554332000001125555555


Q ss_pred             EEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeec
Q 017981          219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIE  272 (363)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~  272 (363)
                      +.+|........   ....+++|++|+++++.....   .+..+++|+.+.+..++.
T Consensus       112 Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          112 LRSNRITCVGND---SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CTTSCCCCBCTT---SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCCCcCCeECHh---HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            555544321000   012346677777776655433   245667777777765554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.22  E-value=3.8e-07  Score=75.54  Aligned_cols=60  Identities=20%  Similarity=0.180  Sum_probs=27.0

Q ss_pred             cCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE
Q 017981          139 TCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI  199 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  199 (363)
                      .+++|++|+++++.+...+.  +..+++|++|+|.++.+..-. ...+..+++|++|.+.+|.
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQLKELALNTNQ  111 (208)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCCCEEEcCCCc
Confidence            35555555555554443221  234455555555555443221 1223445555555555544

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.21  E-value=6.2e-07  Score=77.28  Aligned_cols=36  Identities=28%  Similarity=0.502  Sum_probs=33.9

Q ss_pred             cccCCCChHHHHHHhcCCChhHhh-hhhhhccchhhh
Q 017981            9 DRISCLPNAILCHILSFLPTKYAV-ATCVLSSTWKLV   44 (363)
Q Consensus         9 d~i~~LPd~il~~Ils~L~~~d~~-~~~~vskrWr~l   44 (363)
                      ..+..||+|++.+||++||.++++ ++++|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            468899999999999999999999 999999999975

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.20  E-value=5.1e-07  Score=74.77  Aligned_cols=126  Identities=17%  Similarity=0.034  Sum_probs=84.1

Q ss_pred             CCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEE-EecCCcce
Q 017981          140 CKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN-IPSLTLKR  216 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~-i~~~~L~~  216 (363)
                      .++|++|+++++.+...+.  +..+++|++|+|.++.+..- ....+..+++|++|.+.+|.+.+. ..-. ...++|+.
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  104 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKE  104 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCE
Confidence            4689999999998875543  45899999999999977643 234467899999999999875544 1111 12478889


Q ss_pred             EEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeee
Q 017981          217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYG  270 (363)
Q Consensus       217 L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~  270 (363)
                      |++.+|........   ....+++|++|+++++......   +..+++|+.+.+..+
T Consensus       105 L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          105 LALNTNQLQSLPDG---VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             EECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCcCcccCHh---HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            98888865432111   1124578888888877554322   345566666665544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.16  E-value=4.8e-07  Score=75.72  Aligned_cols=128  Identities=15%  Similarity=0.046  Sum_probs=87.8

Q ss_pred             CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      .++++|.+..+..  ..++. .+..+++|++|+|++|.+...  ..+..+++|++|+|+++.++.- -..++.++++|++
T Consensus        32 ~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCE
Confidence            4688888876654  23443 455688999999999887753  3456889999999999887643 1334678899999


Q ss_pred             EEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981          193 LSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG  250 (363)
Q Consensus       193 L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  250 (363)
                      |.|.+|.+.+. ..-.+ ..++|+.|++.+|........   .....++|++|.++++.
T Consensus       109 L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          109 LLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             EECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCEe-CHHHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCC
Confidence            99999875544 11111 237899999999876543111   11246889999998874

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.12  E-value=5.2e-07  Score=76.90  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=32.3

Q ss_pred             ccCCCChHHHHHHhcCCChhHhhhhhhhccchhh
Q 017981           10 RISCLPNAILCHILSFLPTKYAVATCVLSSTWKL   43 (363)
Q Consensus        10 ~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~   43 (363)
                      .|++||+||+.+||+||+.+|+++++.|||+||.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999995

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.10  E-value=9.9e-07  Score=70.25  Aligned_cols=81  Identities=14%  Similarity=0.050  Sum_probs=63.7

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCc---cc----CcccceeeeeeEE-EccchHHHHhccCC
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPT---IF----FPSAKILHVILNT-IDNNFSDWLFSKCP  188 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~---~~----~~~L~~L~L~~~~-~~~~~l~~ll~~cp  188 (363)
                      .+++|+++.+......+.. +..|++|++|+|++|...++.+.   ..    +++|++|+|++|. +++.++..+ ..||
T Consensus        62 ~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred             eEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence            6999999988765555543 46899999999999975444222   12    4689999999995 888888876 5799


Q ss_pred             ccceEEEeeeE
Q 017981          189 ALEDLSIKGYI  199 (363)
Q Consensus       189 ~Le~L~L~~c~  199 (363)
                      +|++|.|.+|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            99999999986

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.09  E-value=9e-07  Score=74.04  Aligned_cols=130  Identities=11%  Similarity=0.017  Sum_probs=83.2

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      ..+++|.++.+......-+..+..+++|++|+|+++.+...+  .+..+++|++|+|.++.++.-. ...+.++++|++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCEE
Confidence            356777776655422212233556888888888888776543  3567888888888888775442 3346778888888


Q ss_pred             EEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecC
Q 017981          194 SIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG  250 (363)
Q Consensus       194 ~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  250 (363)
                      .|.+|.+.+. ..-.+ ..++|+.|++.+|........   ....+++|++|.++++.
T Consensus       111 ~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          111 MLRSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             ECTTSCCCCB-CTTSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTTCCEEECCSCC
T ss_pred             ECCCCcCCeE-CHhHcCCCccCCEEECCCCcCCEECHH---HhcCCCCCCEEEecCcC
Confidence            8888875443 11111 237888888888865432111   11246788888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.07  E-value=3.7e-07  Score=82.50  Aligned_cols=83  Identities=18%  Similarity=0.033  Sum_probs=47.7

Q ss_pred             CcccEEEecccccccCC-C-cc-cCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceE
Q 017981          141 KTLEVLKLDMNFFIKTP-P-TI-FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRL  217 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~-~-~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L  217 (363)
                      +.++.|+|+++.+...+ . +. .+++|++|+|.++.+..-. ...+.++++|++|+|.+|.+...........++|+.|
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence            45778888887776432 2 33 6778888888877665431 1235677888888887765322100000012556666


Q ss_pred             EEEecCC
Q 017981          218 RLELEAP  224 (363)
Q Consensus       218 ~l~~~~~  224 (363)
                      ++.+|..
T Consensus       118 ~L~~N~i  124 (361)
T 2xot_A          118 LLYNNHI  124 (361)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCcc
Confidence            6665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.03  E-value=1.1e-06  Score=79.34  Aligned_cols=153  Identities=16%  Similarity=0.075  Sum_probs=98.8

Q ss_pred             CCceEEEEEcCCCccccCCcc-cc-cCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccc
Q 017981          116 RNVREIEISLNDDECIELPHC-IY-TCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALE  191 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~-~~-~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  191 (363)
                      ..++.|+++.+..  ..++.. +. .+++|++|+|++|.+...+  .+..+++|+.|+|+++.+..- ....+.++++|+
T Consensus        39 ~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence            3577888876653  234443 33 7899999999999887543  356889999999999977543 123467889999


Q ss_pred             eEEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCC--ceEE
Q 017981          192 DLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHS--LTKA  265 (363)
Q Consensus       192 ~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~--L~~~  265 (363)
                      +|.|.+|.+... ..-.+ ..++|+.|++.+|...........-...+++|+.|+++++....+.   +..++.  ++.+
T Consensus       116 ~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l  194 (361)
T 2xot_A          116 VLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL  194 (361)
T ss_dssp             EEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred             EEECCCCcccEE-CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence            999999874322 10011 2378999999998765431111111145789999999988765443   344554  3556


Q ss_pred             EEeeeec
Q 017981          266 VVDYGIE  272 (363)
Q Consensus       266 ~l~~~~~  272 (363)
                      .+..++.
T Consensus       195 ~l~~N~~  201 (361)
T 2xot_A          195 YLHNNPL  201 (361)
T ss_dssp             ECCSSCE
T ss_pred             EecCCCc
Confidence            6665544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.01  E-value=2.8e-07  Score=89.43  Aligned_cols=171  Identities=12%  Similarity=0.008  Sum_probs=94.5

Q ss_pred             ccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEecc
Q 017981          160 IFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAP  239 (363)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p  239 (363)
                      ..+++|+.+++..+......-...+..+++|+.+.+..|.............++|+.|.+.+|.....  ........++
T Consensus       417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~--~~~~~~~~l~  494 (635)
T 4g8a_A          417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELR  494 (635)
T ss_dssp             TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCT
T ss_pred             cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc--cCchhhhhcc
Confidence            35556666666555443332223345566666666665542211000111236788888877743211  0011123467


Q ss_pred             CcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccc
Q 017981          240 NLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYA  316 (363)
Q Consensus       240 ~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~  316 (363)
                      +|++|+++++.....   .+.++++|+.+++..+.-..   .        ....+.++++|+.|+++++.+   ..+.. 
T Consensus       495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~---l--------~~~~~~~l~~L~~L~Ls~N~l---~~~~~-  559 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS---L--------DTFPYKCLNSLQVLDYSLNHI---MTSKK-  559 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB---C--------CCGGGTTCTTCCEEECTTSCC---CBCCS-
T ss_pred             ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC---C--------ChhHHhCCCCCCEEECCCCcC---CCCCH-
Confidence            899999998866544   35678888888876543211   0        123367788999999998876   43322 


Q ss_pred             cCCCCCCC-CCcceEEEEeccC---CChHHHHHHHHh
Q 017981          317 NDHSFPTF-PFLNRLEVEGVGA---CGWLSLAHIFSR  349 (363)
Q Consensus       317 ~~~~~~~~-~~L~~L~l~~~~~---~~~~~l~~ll~~  349 (363)
                       . .+..+ .+|+.|++++++-   ++..++...++.
T Consensus       560 -~-~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~  594 (635)
T 4g8a_A          560 -Q-ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD  594 (635)
T ss_dssp             -S-CTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred             -H-HHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHh
Confidence             1 22233 5789999988653   233455555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.95  E-value=9.4e-08  Score=86.68  Aligned_cols=165  Identities=13%  Similarity=0.112  Sum_probs=88.5

Q ss_pred             HhCCceEEEEEcCCCcc---ccCCccccc-CCcccEEEecccccccC---CCcccCcccceeeeeeEEEccchHHHH---
Q 017981          114 TMRNVREIEISLNDDEC---IELPHCIYT-CKTLEVLKLDMNFFIKT---PPTIFFPSAKILHVILNTIDNNFSDWL---  183 (363)
Q Consensus       114 ~~~~l~~L~l~~~~~~~---~~l~~~~~~-~~~L~~L~L~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l---  183 (363)
                      +...+++++++.+....   ..+...+.. +++|++|+|++|.+.+.   .-...+++|++|+|++|.+++.+...+   
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            34577777776554321   122222222 46888888888876532   112246678888888887776644333   


Q ss_pred             h-ccCCccceEEEeeeEeCCCceeEE-----EecCCcceEEEEecCCccccCC-ceEEEEeccCcceEEEeecCCCceee
Q 017981          184 F-SKCPALEDLSIKGYIYGTDSVTLN-----IPSLTLKRLRLELEAPEEDYIT-KYKVIIRAPNLEQLYIRDHGPGLYVV  256 (363)
Q Consensus       184 l-~~cp~Le~L~L~~c~~~~~~~~l~-----i~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~p~L~~L~l~~~~~~~~~~  256 (363)
                      + ..+++|++|.|.+|.+... ....     ...++|++|++.+|...+.... ........++|++|+++++..     
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i-----  223 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAA-GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-----  223 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHH-HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC-----
T ss_pred             HHhcCCccceeeCCCCCCChH-HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC-----
Confidence            2 3567788888888764321 1101     1235677777776654321000 000001234555555555432     


Q ss_pred             ecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcc
Q 017981          257 HELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM  307 (363)
Q Consensus       257 ~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  307 (363)
                                             .+.....+...+...++|+.|+++++.+
T Consensus       224 -----------------------~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          224 -----------------------GDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             -----------------------CHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             -----------------------CHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence                                   1111223556666778888888887765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.92  E-value=2.7e-06  Score=79.18  Aligned_cols=41  Identities=22%  Similarity=0.370  Sum_probs=37.1

Q ss_pred             CCCcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhc
Q 017981            6 STEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWT   46 (363)
Q Consensus         6 ~~~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~   46 (363)
                      -..|.|+.||+|++.+||+|||.+|++++++|||+|+++..
T Consensus        10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (464)
T 3v7d_B           10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   50 (464)
T ss_dssp             CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred             cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence            35789999999999999999999999999999999986533

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.88  E-value=3.1e-06  Score=69.13  Aligned_cols=80  Identities=19%  Similarity=0.127  Sum_probs=39.7

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      ++++|.+..+..  ..+|..+..+++|++|+|++|.+...+  .+..+++|++|+|.++.+..-. ...+.++++|++|.
T Consensus        32 ~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           32 DVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLS  108 (193)
T ss_dssp             TCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEE
Confidence            455555544432  134444445556666666665555332  1345555666666555544321 11244555555555


Q ss_pred             EeeeE
Q 017981          195 IKGYI  199 (363)
Q Consensus       195 L~~c~  199 (363)
                      |.+|.
T Consensus       109 L~~N~  113 (193)
T 2wfh_A          109 LHGND  113 (193)
T ss_dssp             CCSSC
T ss_pred             CCCCC
Confidence            55554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.86  E-value=2.1e-06  Score=82.21  Aligned_cols=79  Identities=20%  Similarity=0.231  Sum_probs=41.3

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .++.|+++.+..  ..+|. +..+++|+.|+|++|.+...| .+..+++|+.|+|+++.+++  +. -+..+++|++|.|
T Consensus       442 ~L~~L~Ls~n~l--~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDL--TVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCC--SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCC--CCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence            455555544432  12443 555666666666666555332 23355666666666665543  22 2455566666666


Q ss_pred             eeeEeC
Q 017981          196 KGYIYG  201 (363)
Q Consensus       196 ~~c~~~  201 (363)
                      .+|.+.
T Consensus       516 s~N~l~  521 (567)
T 1dce_A          516 CNNRLQ  521 (567)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.85  E-value=3.2e-06  Score=75.92  Aligned_cols=182  Identities=13%  Similarity=0.005  Sum_probs=98.3

Q ss_pred             cCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeee-EeCCCceeEE
Q 017981          132 ELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGY-IYGTDSVTLN  208 (363)
Q Consensus       132 ~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c-~~~~~~~~l~  208 (363)
                      .+|..+  .+++++|+|+++.+...+  .+.++++|++|+|+++.+.+.-=...+.++++|+++....+ ....+.....
T Consensus        23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f  100 (350)
T 4ay9_X           23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF  100 (350)
T ss_dssp             SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred             ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence            456544  368999999999887644  35689999999999986543210234677888887655543 2211100011


Q ss_pred             EecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCC-cee---eecC-CCceEEEEeeeeceeccCCCchhh
Q 017981          209 IPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG-LYV---VHEL-HSLTKAVVDYGIECILDYDSPEDV  283 (363)
Q Consensus       209 i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~-~~~---~~~~-~~L~~~~l~~~~~~~~~~~~~~~~  283 (363)
                      ...++|+.|.+.+|.......   .......++..|.+.++... ...   +..+ ..++.+.+....-..         
T Consensus       101 ~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~---------  168 (350)
T 4ay9_X          101 QNLPNLQYLLISNTGIKHLPD---VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE---------  168 (350)
T ss_dssp             CCCTTCCEEEEEEECCSSCCC---CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE---------
T ss_pred             hhccccccccccccccccCCc---hhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC---------
Confidence            224789999999987643211   01134456777777664322 111   1222 235555544332110         


Q ss_pred             HHHHHHHhhccCcceEEEEeCC-ccccccccccccCCCCCCCCCcceEEEEecc
Q 017981          284 AQAVVDMLRDIKNIKSLSLSSG-TMFALDRLDYANDHSFPTFPFLNRLEVEGVG  336 (363)
Q Consensus       284 ~~~~~~~l~~l~~l~~L~l~~~-~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~  336 (363)
                         +..-+-...+++.|.+... .+   ..+..  + .+..+++|+.|+++.+.
T Consensus       169 ---i~~~~f~~~~L~~l~l~~~n~l---~~i~~--~-~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          169 ---IHNSAFNGTQLDELNLSDNNNL---EELPN--D-VFHGASGPVILDISRTR  213 (350)
T ss_dssp             ---ECTTSSTTEEEEEEECTTCTTC---CCCCT--T-TTTTEECCSEEECTTSC
T ss_pred             ---CChhhccccchhHHhhccCCcc---cCCCH--H-HhccCcccchhhcCCCC
Confidence               0001112346777777643 33   22211  1 23456778888888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.85  E-value=3.7e-06  Score=68.64  Aligned_cols=88  Identities=17%  Similarity=0.049  Sum_probs=50.8

Q ss_pred             cCCcccccCCcccEEEecccccccCCC---cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEE
Q 017981          132 ELPHCIYTCKTLEVLKLDMNFFIKTPP---TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN  208 (363)
Q Consensus       132 ~l~~~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~  208 (363)
                      .+|..+.  ++|++|.|+++.+...+.   +..+++|++|+|.++.+++-. ...+.++++|++|.|.+|.+.+. ..-.
T Consensus        22 ~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~   97 (192)
T 1w8a_A           22 EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEI-SNKM   97 (192)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEE-CSSS
T ss_pred             cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCcc-CHHH
Confidence            4454333  377888888877765432   457778888888887765431 23356677888888877764332 1000


Q ss_pred             E-ecCCcceEEEEecC
Q 017981          209 I-PSLTLKRLRLELEA  223 (363)
Q Consensus       209 i-~~~~L~~L~l~~~~  223 (363)
                      + ..++|+.|++.+|.
T Consensus        98 ~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             STTCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCCc
Confidence            1 12455555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.80  E-value=6.2e-06  Score=66.23  Aligned_cols=106  Identities=17%  Similarity=0.081  Sum_probs=50.3

Q ss_pred             CcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEE-EecCCcceE
Q 017981          141 KTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLN-IPSLTLKRL  217 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~-i~~~~L~~L  217 (363)
                      ++|++|+++++.+...+.  +..+++|++|+|.++.++.-. ...+..+++|++|.+.+|.+.+. ..-. ...++|+.|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCEE
Confidence            455666666555543321  234556666666655543221 12234556666666665553332 1100 112556666


Q ss_pred             EEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981          218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP  251 (363)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  251 (363)
                      ++.+|........   ....+++|++|+++++..
T Consensus       106 ~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          106 ALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             ECCSSCCSCCCTT---TTTTCTTCCEEECCSSCB
T ss_pred             ECcCCcceEeCHH---HhcCCcccCEEEecCCCe
Confidence            6665544321110   012346777777776643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.79  E-value=8.4e-06  Score=65.45  Aligned_cols=121  Identities=17%  Similarity=0.057  Sum_probs=53.8

Q ss_pred             cEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE-EEecCCcceEEEEec
Q 017981          144 EVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL-NIPSLTLKRLRLELE  222 (363)
Q Consensus       144 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l-~i~~~~L~~L~l~~~  222 (363)
                      +.+++.++.+...| ...+++|++|+|.++.+..- ....+..+++|++|.+.+|.+.+. ..- ....++|+.|++.+|
T Consensus        10 ~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTSVP-TGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCccCC-CCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCC
Confidence            44555554444322 22235566666665554322 112244556666666665553332 110 012255666666655


Q ss_pred             CCccccCCceEEEEeccCcceEEEeecCCCcee---eecCCCceEEEEeee
Q 017981          223 APEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV---VHELHSLTKAVVDYG  270 (363)
Q Consensus       223 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~~~l~~~  270 (363)
                      ........   .....++|++|+++++....+.   +..+++|+.+.+..+
T Consensus        87 ~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           87 KLQSLPNG---VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccccCHH---HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            44321000   0012455666666655443222   234555555555444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.78  E-value=8.9e-06  Score=75.29  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=37.7

Q ss_pred             CCCCCCcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhh
Q 017981            3 NGPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLV   44 (363)
Q Consensus         3 ~~~~~~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l   44 (363)
                      ++....|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus        11 ~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             CccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            344567899999999999999999999999999999999853

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.73  E-value=5.7e-06  Score=79.19  Aligned_cols=78  Identities=14%  Similarity=-0.018  Sum_probs=41.2

Q ss_pred             cccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEe-cCCcceEEEE
Q 017981          142 TLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLE  220 (363)
Q Consensus       142 ~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~-~~~L~~L~l~  220 (363)
                      .|+.|+|++|.+...|.+..+++|+.|+|+++.++.  +..-+.++++|+.|.|.+|.+.++ .  .+. .++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l-p--~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENV-D--GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCC-G--GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCCCCCC-c--ccCCCCCCcEEECC
Confidence            355666666665554555566666666666665541  222345566666666666554443 2  111 2455555555


Q ss_pred             ecCC
Q 017981          221 LEAP  224 (363)
Q Consensus       221 ~~~~  224 (363)
                      +|..
T Consensus       517 ~N~l  520 (567)
T 1dce_A          517 NNRL  520 (567)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            5443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.71  E-value=9.3e-06  Score=74.96  Aligned_cols=40  Identities=30%  Similarity=0.364  Sum_probs=36.5

Q ss_pred             CCCCCcccCCCChH----HHHHHhcCCChhHhhhhhhhccchhh
Q 017981            4 GPSTEDRISCLPNA----ILCHILSFLPTKYAVATCVLSSTWKL   43 (363)
Q Consensus         4 ~~~~~d~i~~LPd~----il~~Ils~L~~~d~~~~~~vskrWr~   43 (363)
                      +.-..|.|+.||+|    ++.+||+||+.++++++++|||+|+.
T Consensus         4 ~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            4 IMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            33457899999999    99999999999999999999999984

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.67  E-value=1.4e-05  Score=65.31  Aligned_cols=60  Identities=20%  Similarity=0.162  Sum_probs=35.8

Q ss_pred             CcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeC
Q 017981          141 KTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYG  201 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~  201 (363)
                      ++|++|+|+++.+...+ .+..+++|+.|+|+++.++.-. ...+.++++|++|+|.+|...
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccC
Confidence            46777777777666443 3345667777777776655331 123556677777777666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.65  E-value=3.5e-05  Score=68.45  Aligned_cols=100  Identities=15%  Similarity=0.169  Sum_probs=64.1

Q ss_pred             ccCcceEEEeecCCC---ceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcce-EEEEeCCcccccccc
Q 017981          238 APNLEQLYIRDHGPG---LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIK-SLSLSSGTMFALDRL  313 (363)
Q Consensus       238 ~p~L~~L~l~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~~~~l  313 (363)
                      +++|++++++++...   ...+.++.+|+.+.+.......            ....+.++++|+ .+.+.. ..   ..+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I------------~~~aF~~~~~L~~~l~l~~-~l---~~I  288 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTI------------GQRVFSNCGRLAGTLELPA-SV---TAI  288 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEE------------CTTTTTTCTTCCEEEEECT-TC---CEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCccccee------------hHHHhhCChhccEEEEEcc-cc---eEE
Confidence            789999999986543   2347788899988775432111            234577899999 999987 33   333


Q ss_pred             ccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEE
Q 017981          314 DYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVF  358 (363)
Q Consensus       314 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l  358 (363)
                      ..  . .+..+.+|++|.+..+.-...  -...+.+|++|+++..
T Consensus       289 ~~--~-aF~~c~~L~~l~l~~n~i~~I--~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          289 EF--G-AFMGCDNLRYVLATGDKITTL--GDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CT--T-TTTTCTTEEEEEECSSCCCEE--CTTTTCTTCCCCEEEC
T ss_pred             ch--h-hhhCCccCCEEEeCCCccCcc--chhhhcCCcchhhhcc
Confidence            32  1 344677888888855421110  1124678999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.64  E-value=8.2e-06  Score=66.54  Aligned_cols=82  Identities=15%  Similarity=0.028  Sum_probs=62.0

Q ss_pred             CceEEEEEcCCCccccCCc--ccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          117 NVREIEISLNDDECIELPH--CIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      ++++|.+..+..  ..++.  .+..+++|++|+|++|.+...  ..+..+++|+.|+|+++.+.+-. ...+.++++|++
T Consensus        30 ~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~  106 (192)
T 1w8a_A           30 HTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCE
T ss_pred             CCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCCE
Confidence            788888876653  23443  366799999999999988764  24568999999999999876542 233667899999


Q ss_pred             EEEeeeEeC
Q 017981          193 LSIKGYIYG  201 (363)
Q Consensus       193 L~L~~c~~~  201 (363)
                      |.|.+|.+.
T Consensus       107 L~L~~N~l~  115 (192)
T 1w8a_A          107 LNLYDNQIS  115 (192)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCcCC
Confidence            999998743

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.48  E-value=4.2e-06  Score=74.47  Aligned_cols=83  Identities=11%  Similarity=0.029  Sum_probs=50.0

Q ss_pred             CCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcc-eEEEEeccC
Q 017981          259 LHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLN-RLEVEGVGA  337 (363)
Q Consensus       259 ~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~-~L~l~~~~~  337 (363)
                      +++|+.+.+....-..           -....+.+|++|+.|.+... +   +.+..  . .+..+.+|+ .+.+...- 
T Consensus       225 ~~~L~~l~L~~n~i~~-----------I~~~aF~~~~~L~~l~l~~n-i---~~I~~--~-aF~~~~~L~~~l~l~~~l-  285 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT-----------IPDFTFAQKKYLLKIKLPHN-L---KTIGQ--R-VFSNCGRLAGTLELPASV-  285 (329)
T ss_dssp             CTTCCEEECTTBCCCE-----------ECTTTTTTCTTCCEEECCTT-C---CEECT--T-TTTTCTTCCEEEEECTTC-
T ss_pred             cCCCeEEECCCCCcce-----------ecHhhhhCCCCCCEEECCcc-c---ceehH--H-HhhCChhccEEEEEcccc-
Confidence            6788888775421100           02345778899999999875 3   33333  1 234666788 88886521 


Q ss_pred             CChHHHHHHHHhCCCCcceEEeeec
Q 017981          338 CGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       338 ~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                       .. .-...+.+|++|+++++..++
T Consensus       286 -~~-I~~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          286 -TA-IEFGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             -CE-ECTTTTTTCTTEEEEEECSSC
T ss_pred             -eE-EchhhhhCCccCCEEEeCCCc
Confidence             11 001346789999999986554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.44  E-value=4.6e-05  Score=60.69  Aligned_cols=61  Identities=23%  Similarity=0.116  Sum_probs=38.7

Q ss_pred             CcccEEEecccccccC-C-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCC
Q 017981          141 KTLEVLKLDMNFFIKT-P-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGT  202 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~  202 (363)
                      ++|++|+|+++.+... + .+..+++|++|+|.++.+..-. ...+.++++|++|+|.+|.+.+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~   92 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKS   92 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCE
Confidence            6777777777776654 2 2446777777777777665331 2334567777777777766443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.40  E-value=5.6e-05  Score=60.49  Aligned_cols=68  Identities=18%  Similarity=0.090  Sum_probs=39.6

Q ss_pred             cCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCC
Q 017981          132 ELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGT  202 (363)
Q Consensus       132 ~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~  202 (363)
                      .+|..+.  ++|++|+|+++.+...+  .+..+++|+.|+|.++.+..-. ..++..+++|++|+|.+|.+.+
T Consensus        26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~   95 (174)
T 2r9u_A           26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKS   95 (174)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCC
T ss_pred             ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccce
Confidence            4444332  66777777777666442  2446677777777777654421 2234566777777777665433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.34  E-value=5.9e-06  Score=66.97  Aligned_cols=96  Identities=10%  Similarity=-0.039  Sum_probs=50.1

Q ss_pred             hhHHHHHHHHHh--CCceEEEEEcC-CCcc---ccCCcccccCCcccEEEecccccccC------CCcccCcccceeeee
Q 017981          104 SRLKLWVSFATM--RNVREIEISLN-DDEC---IELPHCIYTCKTLEVLKLDMNFFIKT------PPTIFFPSAKILHVI  171 (363)
Q Consensus       104 ~~~~~wi~~~~~--~~l~~L~l~~~-~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~~------~~~~~~~~L~~L~L~  171 (363)
                      ..+..++..+..  +.+++|+++.+ ....   ..+...+..+++|++|+|++|.+.+.      ......++|++|+|+
T Consensus        22 ~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~  101 (185)
T 1io0_A           22 TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE  101 (185)
T ss_dssp             CCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             cHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence            344445544443  25666666544 3211   12333344466677777776665531      011234566777777


Q ss_pred             eEEEccch---HHHHhccCCccceEEE--eeeE
Q 017981          172 LNTIDNNF---SDWLFSKCPALEDLSI--KGYI  199 (363)
Q Consensus       172 ~~~~~~~~---l~~ll~~cp~Le~L~L--~~c~  199 (363)
                      ++.+.+.+   +...+..+++|++|.|  .+|.
T Consensus       102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          102 SNFISGSGILALVEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred             CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence            77666553   3333455666777766  5554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.31  E-value=4.1e-05  Score=62.61  Aligned_cols=103  Identities=16%  Similarity=0.122  Sum_probs=78.1

Q ss_pred             hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcc-cCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTI-FFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      ..+++.|+++.+..  ..+| .+..+++|++|++++|.+...+... .+++|++|+|.++.+++  +. -+..+++|++|
T Consensus        47 l~~L~~L~ls~n~l--~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           47 LKACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCSEEECSEEEE--SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEE
T ss_pred             CCCCCEEECCCCCC--cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEE
Confidence            46899999965543  2356 6777999999999999888655433 56999999999998865  33 36678999999


Q ss_pred             EEeeeEeCCCceeE-EE-ecCCcceEEEEecCC
Q 017981          194 SIKGYIYGTDSVTL-NI-PSLTLKRLRLELEAP  224 (363)
Q Consensus       194 ~L~~c~~~~~~~~l-~i-~~~~L~~L~l~~~~~  224 (363)
                      ++.+|.+.+. ..+ .+ ..++|+.|++.+|..
T Consensus       121 ~l~~N~i~~~-~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          121 YMSNNKITNW-GEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EESEEECCCH-HHHHHHTTTTTCSEEEECSCHH
T ss_pred             ECCCCcCCch-hHHHHHhcCCCCCEEEecCCcc
Confidence            9999986654 221 12 248999999999864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.30  E-value=2e-05  Score=77.81  Aligned_cols=105  Identities=15%  Similarity=0.075  Sum_probs=74.2

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      ..++.|+|+.+..  ..+|..++.+++|++|+|++|.+...| .+..+++|+.|+|+++.++.  +-.-+..+++|++|.
T Consensus       224 ~~L~~L~Ls~n~l--~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQI--FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSCC--SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCCCC--CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEE
Confidence            4677777766553  367777788888999999988877544 35578889999999888762  233356788899999


Q ss_pred             EeeeEeCCCceeEEEecCCcceEEEEecCCc
Q 017981          195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPE  225 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~  225 (363)
                      |.+|.+..+ ..---..++|+.|+|.+|...
T Consensus       300 L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          300 FFDNMVTTL-PWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CCSSCCCCC-CSSTTSCTTCCCEECTTSCCC
T ss_pred             CCCCCCCcc-ChhhhcCCCccEEeCCCCccC
Confidence            988875544 111112378888888888654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.30  E-value=1.5e-05  Score=78.76  Aligned_cols=113  Identities=11%  Similarity=-0.078  Sum_probs=79.0

Q ss_pred             CCcccccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEec
Q 017981          133 LPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPS  211 (363)
Q Consensus       133 l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~  211 (363)
                      .+..+..+++|+.|+|++|.+...+ ....+++|++|+|.++.++.  +..-+..+++|++|+|.+|.+..+ ..--...
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTSL-PAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEECTTSCCSSC-CSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeCcCCcCCcc-ChhhcCC
Confidence            3455667899999999999887543 45589999999999998862  333467899999999999986543 1111124


Q ss_pred             CCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCC
Q 017981          212 LTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG  252 (363)
Q Consensus       212 ~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~  252 (363)
                      ++|+.|.|.+|.......    ....+++|++|+++++...
T Consensus       293 ~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          293 FQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             TTCSEEECCSSCCCCCCS----STTSCTTCCCEECTTSCCC
T ss_pred             CCCCEEECCCCCCCccCh----hhhcCCCccEEeCCCCccC
Confidence            889999999997643211    1245689999999987654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.28  E-value=0.00016  Score=57.72  Aligned_cols=84  Identities=13%  Similarity=0.098  Sum_probs=64.5

Q ss_pred             CCceEEEEEcCCCccccC-CcccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISLNDDECIEL-PHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      .+++.|+++.+..  ..+ |..+..+++|++|+|++|.+...+.  +..+++|++|+|.++.+..-. ...+..+++|++
T Consensus        33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhccccCCCE
Confidence            5788888876654  234 4456679999999999999886543  458999999999999876431 234678899999


Q ss_pred             EEEeeeEeCC
Q 017981          193 LSIKGYIYGT  202 (363)
Q Consensus       193 L~L~~c~~~~  202 (363)
                      |.|.+|.+..
T Consensus       110 L~L~~N~~~c  119 (174)
T 2r9u_A          110 IYLYNNPWDC  119 (174)
T ss_dssp             EECCSSCBCT
T ss_pred             EEeCCCCccc
Confidence            9999987543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.23  E-value=0.00021  Score=56.85  Aligned_cols=84  Identities=15%  Similarity=0.090  Sum_probs=63.7

Q ss_pred             CCceEEEEEcCCCccccC-CcccccCCcccEEEecccccccCCC--cccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          116 RNVREIEISLNDDECIEL-PHCIYTCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      ..++.|++..+..  ..+ |..+..+++|++|+|++|.+...+.  +..+++|++|+|.++.+..-. ...+..+++|++
T Consensus        30 ~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCE
Confidence            5788888876653  234 4456679999999999999886543  458999999999999876531 234678899999


Q ss_pred             EEEeeeEeCC
Q 017981          193 LSIKGYIYGT  202 (363)
Q Consensus       193 L~L~~c~~~~  202 (363)
                      |.|.+|.+..
T Consensus       107 L~L~~N~~~c  116 (170)
T 3g39_A          107 IWLLNNPWDC  116 (170)
T ss_dssp             EECCSSCBCT
T ss_pred             EEeCCCCCCC
Confidence            9999987543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.15  E-value=7.6e-05  Score=66.73  Aligned_cols=91  Identities=14%  Similarity=0.081  Sum_probs=59.0

Q ss_pred             ccCCcccccCCcccEEEecc-cccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE
Q 017981          131 IELPHCIYTCKTLEVLKLDM-NFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL  207 (363)
Q Consensus       131 ~~l~~~~~~~~~L~~L~L~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l  207 (363)
                      ..+|. +..+++|++|+|++ +.+...+  .+..+++|+.|+|+++.+.+- ....+.++++|++|+|.+|.+.++ ..-
T Consensus        22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~-~~~   98 (347)
T 2ifg_A           22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNALESL-SWK   98 (347)
T ss_dssp             TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCCSCC-CST
T ss_pred             CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcccee-CHH
Confidence            34676 66778888888885 7766543  255788888888888876543 123456788888888888775544 111


Q ss_pred             EEecCCcceEEEEecCC
Q 017981          208 NIPSLTLKRLRLELEAP  224 (363)
Q Consensus       208 ~i~~~~L~~L~l~~~~~  224 (363)
                      .+...+|+.|.+.+|.+
T Consensus        99 ~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           99 TVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             TTCSCCCCEEECCSSCC
T ss_pred             HcccCCceEEEeeCCCc
Confidence            11122388888887754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.81  E-value=0.00059  Score=55.02  Aligned_cols=74  Identities=16%  Similarity=0.196  Sum_probs=49.8

Q ss_pred             HHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEE--EeccCCChHH---HHHHHHhCCCCcceEEee
Q 017981          286 AVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEV--EGVGACGWLS---LAHIFSRMPKLESIVFEE  360 (363)
Q Consensus       286 ~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l--~~~~~~~~~~---l~~ll~~~p~L~~L~l~~  360 (363)
                      .+...+...++|+.|.++.+.+.+ +......+ .+....+|++|++  ..+.- +..+   +...++.++.|++|+++.
T Consensus        84 ~l~~~L~~n~~L~~L~L~~N~i~~-~g~~~l~~-~L~~n~~L~~L~L~~~~N~i-~~~g~~~l~~~L~~n~~L~~L~L~~  160 (185)
T 1io0_A           84 ALAEMLKVNNTLKSLNVESNFISG-SGILALVE-ALQSNTSLIELRIDNQSQPL-GNNVEMEIANMLEKNTTLLKFGYHF  160 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCSSCCCH-HHHHHHHH-GGGGCSSCCEEECCCCSSCC-CHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHhCCCcCEEECcCCcCCH-HHHHHHHH-HHHhCCCceEEEecCCCCCC-CHHHHHHHHHHHHhCCCcCEEeccC
Confidence            467777788899999999887632 11111112 2335567999999  55543 5444   667788899999999987


Q ss_pred             ec
Q 017981          361 VR  362 (363)
Q Consensus       361 ~~  362 (363)
                      ++
T Consensus       161 n~  162 (185)
T 1io0_A          161 TQ  162 (185)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.76  E-value=0.0012  Score=60.31  Aligned_cols=166  Identities=14%  Similarity=0.250  Sum_probs=87.2

Q ss_pred             cccCCcccEEEecccccccC-CCcccCcccceeeeeeE--EEccchHHHHhccCCccceEEEeeeEeCCCceeEEE---e
Q 017981          137 IYTCKTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILN--TIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI---P  210 (363)
Q Consensus       137 ~~~~~~L~~L~L~~~~~~~~-~~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i---~  210 (363)
                      +..|++|+.+.|..+.+... .+...+.+|+.+.|...  .+.    ...+.+|++|+++.+..+.     ..+..   .
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~----~~aF~~~~~L~~l~l~~~l-----~~I~~~aF~  246 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIG----SQAFLKTSQLKTIEIPENV-----STIGQEAFR  246 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEEC----TTTTTTCTTCCCEECCTTC-----CEECTTTTT
T ss_pred             hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheeh----hhHhhCCCCCCEEecCCCc-----cCccccccc
Confidence            34477777777776554432 23334567777777533  111    1236678888888876532     11111   1


Q ss_pred             cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCC--------CceeeecCCCceEEEEeeeeceeccCCCchh
Q 017981          211 SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP--------GLYVVHELHSLTKAVVDYGIECILDYDSPED  282 (363)
Q Consensus       211 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~  282 (363)
                      ..+|+++.+.+.- ...   ....-..+++|+.+.+.+...        ....+.++++|+.+.+.-.....        
T Consensus       247 ~~~L~~i~lp~~i-~~I---~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I--------  314 (401)
T 4fdw_A          247 ESGITTVKLPNGV-TNI---ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRIL--------  314 (401)
T ss_dssp             TCCCSEEEEETTC-CEE---CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEE--------
T ss_pred             cCCccEEEeCCCc-cEE---ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEE--------
Confidence            2567777774331 100   000113567888888776532        12345667777777653211100        


Q ss_pred             hHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981          283 VAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV  335 (363)
Q Consensus       283 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~  335 (363)
                          ....+.+|.+|+.+.|... +   ..+..  . .+..+ +|+.+.+..+
T Consensus       315 ----~~~aF~~c~~L~~l~lp~~-l---~~I~~--~-aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          315 ----GQGLLGGNRKVTQLTIPAN-V---TQINF--S-AFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             ----CTTTTTTCCSCCEEEECTT-C---CEECT--T-SSSSS-CCCEEEECCS
T ss_pred             ----hhhhhcCCCCccEEEECcc-c---cEEcH--H-hCCCC-CCCEEEEcCC
Confidence                2234667788888888543 2   22222  1 22344 6788777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.35  E-value=0.00015  Score=66.22  Aligned_cols=196  Identities=8%  Similarity=0.017  Sum_probs=89.9

Q ss_pred             cccEEEecccc-cccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEE
Q 017981          142 TLEVLKLDMNF-FIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLE  220 (363)
Q Consensus       142 ~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~  220 (363)
                      +|+++.+...- ......+.+|++|+.++|..+.++.=.-. .+. |.+|+++.+.... ..+.......|++|+++.+.
T Consensus       158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~-aF~-~~~L~~l~lp~~l-~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPAS-TFV-YAGIEEVLLPVTL-KEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTT-TTT-TCCCSEEECCTTC-CEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechh-hEe-ecccCEEEeCCch-heehhhHhhCCCCCCEEecC
Confidence            45555555411 11112344566666666654322211000 011 4566666654321 00000001124567777765


Q ss_pred             ecCCccccCCceEEEEeccCcceEEEeecCC--CceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcce
Q 017981          221 LEAPEEDYITKYKVIIRAPNLEQLYIRDHGP--GLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIK  298 (363)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~  298 (363)
                      .+-.. .    ...+....+|+.+.+.....  ....+.++++|+.+.+.......      .....-....+.+|++|+
T Consensus       235 ~~l~~-I----~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~------~~~~~I~~~aF~~c~~L~  303 (401)
T 4fdw_A          235 ENVST-I----GQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFND------DPEAMIHPYCLEGCPKLA  303 (401)
T ss_dssp             TTCCE-E----CTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCC------CTTCEECTTTTTTCTTCC
T ss_pred             CCccC-c----cccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccC------CcccEECHHHhhCCccCC
Confidence            43110 0    00011124677777744321  13346677888888775432110      000000233466788888


Q ss_pred             EEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeec
Q 017981          299 SLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       299 ~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      .+.+... +   +.+..  . .+..+.+|+.+.+...-  ..- -...+.+| +|+++.+..+.
T Consensus       304 ~l~l~~~-i---~~I~~--~-aF~~c~~L~~l~lp~~l--~~I-~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          304 RFEIPES-I---RILGQ--G-LLGGNRKVTQLTIPANV--TQI-NFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             EECCCTT-C---CEECT--T-TTTTCCSCCEEEECTTC--CEE-CTTSSSSS-CCCEEEECCSS
T ss_pred             eEEeCCc-e---EEEhh--h-hhcCCCCccEEEECccc--cEE-cHHhCCCC-CCCEEEEcCCC
Confidence            8888743 3   33332  1 23356678888884321  100 01235678 89999887653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.44  E-value=0.0032  Score=53.67  Aligned_cols=79  Identities=14%  Similarity=0.102  Sum_probs=43.0

Q ss_pred             CCceEEEEEcCCCcc-ccCCcccccCCcccEEEecccccccCCCcccCc--ccceeeeeeEEEccc------hHHHHhcc
Q 017981          116 RNVREIEISLNDDEC-IELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFP--SAKILHVILNTIDNN------FSDWLFSK  186 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~------~l~~ll~~  186 (363)
                      +.++.|+|+.+.... ..++..+..+++|++|+|++|.+.+......+.  +|+.|+|.++.+.+.      -...++..
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~  249 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER  249 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence            466666665544321 134444455677777777776666432222333  667777766665431      12345566


Q ss_pred             CCccceEE
Q 017981          187 CPALEDLS  194 (363)
Q Consensus       187 cp~Le~L~  194 (363)
                      +|+|+.|+
T Consensus       250 ~P~L~~LD  257 (267)
T 3rw6_A          250 FPKLLRLD  257 (267)
T ss_dssp             CTTCCEES
T ss_pred             CcccCeEC
Confidence            67766653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.10  E-value=0.0079  Score=53.41  Aligned_cols=80  Identities=16%  Similarity=0.098  Sum_probs=52.5

Q ss_pred             CceEEEEEc-CCCccccCC-cccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          117 NVREIEISL-NDDECIELP-HCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       117 ~l~~L~l~~-~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      ++++|+|+. ...  ..++ ..+..+++|++|+|++|.+...+  .+..+++|+.|+|+++.+..-. ..++...+ |+.
T Consensus        32 ~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~  107 (347)
T 2ifg_A           32 NLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQE  107 (347)
T ss_dssp             CCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CCE
T ss_pred             CeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ceE
Confidence            677888764 442  2444 34556888888888888777543  2457888888888888775431 12233344 888


Q ss_pred             EEEeeeEe
Q 017981          193 LSIKGYIY  200 (363)
Q Consensus       193 L~L~~c~~  200 (363)
                      |.|.+|.+
T Consensus       108 l~l~~N~~  115 (347)
T 2ifg_A          108 LVLSGNPL  115 (347)
T ss_dssp             EECCSSCC
T ss_pred             EEeeCCCc
Confidence            88887764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.10  E-value=0.013  Score=49.82  Aligned_cols=63  Identities=22%  Similarity=0.245  Sum_probs=29.7

Q ss_pred             cCcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEeCCCceeEE-EecCCcceEEEEecCC
Q 017981          161 FFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIYGTDSVTLN-IPSLTLKRLRLELEAP  224 (363)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~-i~~~~L~~L~l~~~~~  224 (363)
                      .+|+|++|+|+++.+.+- ++...+..+|+|+.|.|.+|.+.+. ..+. +...+|++|.+.+|..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcC
Confidence            355555555555555442 3334444556666666655554332 1110 0111566666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.55  E-value=0.0042  Score=50.19  Aligned_cols=96  Identities=11%  Similarity=0.102  Sum_probs=44.6

Q ss_pred             ChhhHHHHHHHHHhC--CceEEEEEcC-CCc---cccCCcccccCCcccEEEecccccccC--CC----cccCcccceee
Q 017981          102 DSSRLKLWVSFATMR--NVREIEISLN-DDE---CIELPHCIYTCKTLEVLKLDMNFFIKT--PP----TIFFPSAKILH  169 (363)
Q Consensus       102 ~~~~~~~wi~~~~~~--~l~~L~l~~~-~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~----~~~~~~L~~L~  169 (363)
                      +...++..+......  .+++|.++.. ...   ...+...+..-.+|++|+|++|.+.+.  ..    ....+.|++|+
T Consensus        25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~  104 (197)
T 1pgv_A           25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN  104 (197)
T ss_dssp             --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred             CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence            334555555554432  5666666432 211   112222333445666666666665532  00    11345566666


Q ss_pred             eeeEEEccchHHH---HhccCCccceEEEee
Q 017981          170 VILNTIDNNFSDW---LFSKCPALEDLSIKG  197 (363)
Q Consensus       170 L~~~~~~~~~l~~---ll~~cp~Le~L~L~~  197 (363)
                      |.++.+.+.+...   .+.....|++|.|.+
T Consensus       105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          105 VESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             CCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             cCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            6666665553332   233444555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.37  E-value=0.0036  Score=56.88  Aligned_cols=54  Identities=13%  Similarity=0.071  Sum_probs=28.5

Q ss_pred             CCceEEEEEcCCCccccCCc-ccccCCcccEEEecccc-cccCCCcccCcccceeeeee
Q 017981          116 RNVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNF-FIKTPPTIFFPSAKILHVIL  172 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~  172 (363)
                      .+++.+.+....   ..++. .+..|.+|+.+.+..+. ......+..++.|+.+.+..
T Consensus       162 ~~L~~i~l~~~~---~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          162 ESLEYVSLPDSM---ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             TTCCEEECCTTC---CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCT
T ss_pred             CCCcEEecCCcc---ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCC
Confidence            356766663221   23333 33458888888886541 11123344566666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.65  E-value=0.081  Score=42.63  Aligned_cols=124  Identities=15%  Similarity=0.136  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhcCCCCcceEEEEecCCCChhhHHHHHHHHHh--CCceEEEEEcCCCc---cccCCcccccCCcccEEEe
Q 017981           74 RFENFVHRVLLSASGNINKFSLRCCGLVDSSRLKLWVSFATM--RNVREIEISLNDDE---CIELPHCIYTCKTLEVLKL  148 (363)
Q Consensus        74 ~~~~~i~~~l~~~~~~l~~l~l~~~~~~~~~~~~~wi~~~~~--~~l~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~L  148 (363)
                      .+.+.+.+++... ..++.+.+..........+... ..+..  ..+++|.|+.+...   ...+...+...++|++|+|
T Consensus        28 ~v~~~l~~ll~~n-~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L  105 (197)
T 1pgv_A           28 DVESCINRLREDD-TDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV  105 (197)
T ss_dssp             CHHHHHHHHHTTC-SSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred             CHHHHHHHHHhcC-CCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence            4445565555433 4677787753212333433333 23333  37999999776543   2344455556789999999


Q ss_pred             cccccccC------CCcccCcccceeeeeeE---EEccc---hHHHHhccCCccceEEEeeeE
Q 017981          149 DMNFFIKT------PPTIFFPSAKILHVILN---TIDNN---FSDWLFSKCPALEDLSIKGYI  199 (363)
Q Consensus       149 ~~~~~~~~------~~~~~~~~L~~L~L~~~---~~~~~---~l~~ll~~cp~Le~L~L~~c~  199 (363)
                      ++|.+.+.      ........|++|+|.++   .+.+.   .+...+...+.|++|.+..+.
T Consensus       106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             CSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            99988742      12335677999999865   34443   567778899999999998654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=87.83  E-value=1.1  Score=40.11  Aligned_cols=34  Identities=9%  Similarity=0.098  Sum_probs=16.1

Q ss_pred             ccCCcccEEEecccccc-cCCCcccCcccceeeee
Q 017981          138 YTCKTLEVLKLDMNFFI-KTPPTIFFPSAKILHVI  171 (363)
Q Consensus       138 ~~~~~L~~L~L~~~~~~-~~~~~~~~~~L~~L~L~  171 (363)
                      ..|.+|+.+.+...... ....+..+.+|+.+.+.
T Consensus       134 ~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          134 HHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLP  168 (394)
T ss_dssp             TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             hhhcccccccccceeeeecccceeccccccccccc
Confidence            44777777777532111 11223344555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	363
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	4e-05

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 9  DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNLCFDDRL 57
          D IS LP  +  ++LSFL  K  +        W+        L  D+ L
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWR-------ILAEDNLL 58

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 9  DRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLPNL 51
          D I+ LP  I   I ++L  +  + +  +S  W  +     +L
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.43
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.98
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.89
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.87
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.85
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.63
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.56
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.54
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.53
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.36
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.27
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.25
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.24
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.23
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.17
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.08
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.99
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.6
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.11
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.99
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.72
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.97
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	91.42

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.6e-17  Score=139.06  Aligned_cols=200  Identities=20%  Similarity=0.186  Sum_probs=110.3

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccC--CCcccCcccceeeeeeEE-EccchHHHHhccCCccceE
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNT-IDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L  193 (363)
                      ++++++++.+......+...+.+|++|++|+|.+|.+.+.  .....+++|++|+|++|. +++.++..++.+||+|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            5666666544332233444445577777777777655421  223356677777777653 4444666666677777777


Q ss_pred             EEeeeEeCCC---ceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeee
Q 017981          194 SIKGYIYGTD---SVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYG  270 (363)
Q Consensus       194 ~L~~c~~~~~---~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~  270 (363)
                      .+.+|..-..   ...+...+++|++|.+.+|...-.+.....+...+|+|++|+++++..          +        
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~----------i--------  188 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM----------L--------  188 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT----------C--------
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccC----------C--------
Confidence            7776641110   000111135666666665432100011111223345555555544321          0        


Q ss_pred             eceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhC
Q 017981          271 IECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRM  350 (363)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~  350 (363)
                                   .+.....+.++++|++|.++++...+++.+.     .+..+++|+.|++.++  .++.++..+.++|
T Consensus       189 -------------td~~~~~l~~~~~L~~L~L~~C~~i~~~~l~-----~L~~~~~L~~L~l~~~--~~d~~l~~l~~~l  248 (284)
T d2astb2         189 -------------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-----ELGEIPTLKTLQVFGI--VPDGTLQLLKEAL  248 (284)
T ss_dssp             -------------CGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-----GGGGCTTCCEEECTTS--SCTTCHHHHHHHS
T ss_pred             -------------CchhhhhhcccCcCCEEECCCCCCCChHHHH-----HHhcCCCCCEEeeeCC--CCHHHHHHHHHhC
Confidence                         0113344567889999999886543333322     3446778999999877  5677888899999


Q ss_pred             CCCc
Q 017981          351 PKLE  354 (363)
Q Consensus       351 p~L~  354 (363)
                      |+|+
T Consensus       249 p~L~  252 (284)
T d2astb2         249 PHLQ  252 (284)
T ss_dssp             TTSE
T ss_pred             cccc
Confidence            9886

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.5e-15  Score=129.67  Aligned_cols=181  Identities=16%  Similarity=0.192  Sum_probs=100.6

Q ss_pred             cccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEE-ecCCcceEEEEecCCccccCCceEEEEeccCc
Q 017981          163 PSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNL  241 (363)
Q Consensus       163 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L  241 (363)
                      .+|++|+|+++.++++.+..++..||+|++|.+.+|...+. ....+ .+++|++|++++|...++ .....+...+|+|
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~Ls~c~~itd-~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcH-HHHHHhcCCCCcCccccccccccc-cccchhhHHHHhc
Confidence            34555555555554445555555555555555555542211 00011 124555555555432221 0111122345666


Q ss_pred             ceEEEeecCCC-c----eee-ecCCCceEEEEeeeeceeccCCCchhhH-HHHHHHhhccCcceEEEEeCCccccccccc
Q 017981          242 EQLYIRDHGPG-L----YVV-HELHSLTKAVVDYGIECILDYDSPEDVA-QAVVDMLRDIKNIKSLSLSSGTMFALDRLD  314 (363)
Q Consensus       242 ~~L~l~~~~~~-~----~~~-~~~~~L~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~  314 (363)
                      ++|+++++... .    ..+ ...+.|+.+.+..+..         ... ..+..++..+++|++|+++++...+++.+.
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~  194 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK---------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  194 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG---------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             cccccccccccccccchhhhcccccccchhhhccccc---------ccccccccccccccccccccccccccCCCchhhh
Confidence            66666654321 1    111 2245666666543211         111 236777888999999999987553333322


Q ss_pred             cccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEee
Q 017981          315 YANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEE  360 (363)
Q Consensus       315 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~  360 (363)
                           .+..+++|++|++.+|...++.++..+ .+||+|+.|++.+
T Consensus       195 -----~l~~~~~L~~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~  234 (284)
T d2astb2         195 -----EFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFG  234 (284)
T ss_dssp             -----GGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTT
T ss_pred             -----hhcccCcCCEEECCCCCCCChHHHHHH-hcCCCCCEEeeeC
Confidence                 344678899999999988888877764 6799999999864

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.5e-12  Score=74.86  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=33.3

Q ss_pred             cCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhc
Q 017981           11 ISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWT   46 (363)
Q Consensus        11 i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~   46 (363)
                      ++.||+|++.+||+|||.+|++++++|||+|+++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999998653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.98  E-value=2.9e-11  Score=100.24  Aligned_cols=185  Identities=12%  Similarity=0.105  Sum_probs=98.4

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI  195 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  195 (363)
                      .++++|.+..+...  .++ .+.++++|++|++++|.+....++..+++|+.+++.++.+++-  .. +.++++|+.|.+
T Consensus        41 ~~L~~L~l~~~~i~--~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i--~~-l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SA-IAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GG-GTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCC--cch-hHhcCCCCcEeecCCceeecccccccccccccccccccccccc--cc-cccccccccccc
Confidence            46777777655432  332 3556777777777777666554566677777777776655432  11 456677777777


Q ss_pred             eeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeeeceec
Q 017981          196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECIL  275 (363)
Q Consensus       196 ~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~  275 (363)
                      .+|...+. .. ....+.++.+.+.++.....     .....+++|++|.++++.....                     
T Consensus       115 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~~---------------------  166 (227)
T d1h6ua2         115 TSTQITDV-TP-LAGLSNLQVLYLDLNQITNI-----SPLAGLTNLQYLSIGNAQVSDL---------------------  166 (227)
T ss_dssp             TTSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSCCCCC---------------------
T ss_pred             cccccccc-ch-hccccchhhhhchhhhhchh-----hhhccccccccccccccccccc---------------------
Confidence            66553322 11 01124455555544432211     0012344555555544422110                     


Q ss_pred             cCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcc
Q 017981          276 DYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLES  355 (363)
Q Consensus       276 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~  355 (363)
                                   ..+.++++|+.|+++++.+   ..+.     .+..+++|++|+++.+.- +.  +. -++++++|+.
T Consensus       167 -------------~~l~~l~~L~~L~Ls~n~l---~~l~-----~l~~l~~L~~L~Ls~N~l-t~--i~-~l~~l~~L~~  221 (227)
T d1h6ua2         167 -------------TPLANLSKLTTLKADDNKI---SDIS-----PLASLPNLIEVHLKNNQI-SD--VS-PLANTSNLFI  221 (227)
T ss_dssp             -------------GGGTTCTTCCEEECCSSCC---CCCG-----GGGGCTTCCEEECTTSCC-CB--CG-GGTTCTTCCE
T ss_pred             -------------hhhcccccceecccCCCcc---CCCh-----hhcCCCCCCEEECcCCcC-CC--Cc-ccccCCCCCE
Confidence                         1145566777777766654   3221     233456677777777642 21  22 2567788888


Q ss_pred             eEEe
Q 017981          356 IVFE  359 (363)
Q Consensus       356 L~l~  359 (363)
                      |+|+
T Consensus       222 L~ls  225 (227)
T d1h6ua2         222 VTLT  225 (227)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            8775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=1.1e-10  Score=94.48  Aligned_cols=57  Identities=12%  Similarity=0.074  Sum_probs=25.3

Q ss_pred             cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeee
Q 017981          139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGY  198 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c  198 (363)
                      .+++|++|++++|.+.+.++...+++|++|++.++.+..-  .. +.+++.|+.|.+.+|
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~--~~-l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNN  116 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEECCSS
T ss_pred             cCCCcCcCccccccccCcccccCCcccccccccccccccc--cc-ccccccccccccccc
Confidence            3455555555555444333344445555555544433221  11 334444555544443

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.1e-10  Score=79.94  Aligned_cols=42  Identities=26%  Similarity=0.376  Sum_probs=37.8

Q ss_pred             CCCCCcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhhh
Q 017981            4 GPSTEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVW   45 (363)
Q Consensus         4 ~~~~~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~   45 (363)
                      +.-..|.|+.||+||+.+||+|||.+|+++++.|||+|+.++
T Consensus        12 p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             chhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            344579999999999999999999999999999999999753

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=1.8e-10  Score=81.92  Aligned_cols=39  Identities=23%  Similarity=0.406  Sum_probs=36.2

Q ss_pred             CcccCCCChHHHHHHhcCCChhHhhhhhhhccchhhhhc
Q 017981            8 EDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWT   46 (363)
Q Consensus         8 ~d~i~~LPd~il~~Ils~L~~~d~~~~~~vskrWr~l~~   46 (363)
                      .|.|+.||+||+.+||+|||.+|++++++|||+|+++..
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999987543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.85  E-value=3.2e-11  Score=104.99  Aligned_cols=106  Identities=12%  Similarity=0.108  Sum_probs=72.8

Q ss_pred             CceEEEEEcCCCc-cccCCcccccCCcccEEEecc-cccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccce
Q 017981          117 NVREIEISLNDDE-CIELPHCIYTCKTLEVLKLDM-NFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALED  192 (363)
Q Consensus       117 ~l~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~-~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  192 (363)
                      +|.+|++...... ...+|..+.++++|++|+|++ +.+.+.  +....+++|++|+|+++.+.+. ....+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhcc
Confidence            5788888765443 346888888899999999986 455532  3456888999999999877654 2234667888999


Q ss_pred             EEEeeeEeCCCceeEEE-ecCCcceEEEEecCC
Q 017981          193 LSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAP  224 (363)
Q Consensus       193 L~L~~c~~~~~~~~l~i-~~~~L~~L~l~~~~~  224 (363)
                      +.+..|..... ..-.+ ..++|+.+.+.++..
T Consensus       130 l~l~~N~~~~~-~p~~l~~l~~L~~l~l~~n~l  161 (313)
T d1ogqa_         130 LDFSYNALSGT-LPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             EECCSSEEESC-CCGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccc-CchhhccCcccceeecccccc
Confidence            98888764332 11111 237788888887754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.82  E-value=4.9e-10  Score=92.59  Aligned_cols=164  Identities=13%  Similarity=0.082  Sum_probs=110.9

Q ss_pred             hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEE
Q 017981          115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS  194 (363)
Q Consensus       115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  194 (363)
                      .++++.|+++.+...  .++ .+..+++|+++.+.++.+...++...+++|+.+.+.++...+..   -+...+.++.+.
T Consensus        62 l~~L~~L~ls~n~i~--~~~-~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~---~~~~~~~~~~l~  135 (227)
T d1h6ua2          62 LNNLIGLELKDNQIT--DLA-PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLY  135 (227)
T ss_dssp             CTTCCEEECCSSCCC--CCG-GGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCG---GGTTCTTCCEEE
T ss_pred             CCCCcEeecCCceee--ccc-cccccccccccccccccccccccccccccccccccccccccccc---hhccccchhhhh
Confidence            469999999766532  222 36779999999999998876666778999999999988765431   156789999999


Q ss_pred             EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeeecee
Q 017981          195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECI  274 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~  274 (363)
                      +..+..... .. ....++|+.|.+.+|...+.. .    ...+|+|++|+++++....+.                   
T Consensus       136 ~~~~~~~~~-~~-~~~~~~L~~L~l~~n~~~~~~-~----l~~l~~L~~L~Ls~n~l~~l~-------------------  189 (227)
T d1h6ua2         136 LDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLT-P----LANLSKLTTLKADDNKISDIS-------------------  189 (227)
T ss_dssp             CCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCG-G----GTTCTTCCEEECCSSCCCCCG-------------------
T ss_pred             chhhhhchh-hh-hccccccccccccccccccch-h----hcccccceecccCCCccCCCh-------------------
Confidence            988764433 11 123588999999988654321 1    134688888888876432110                   


Q ss_pred             ccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEE
Q 017981          275 LDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVE  333 (363)
Q Consensus       275 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~  333 (363)
                                     .+.++++|+.|.++++.+   ..+.     .+..+++|+.|+++
T Consensus       190 ---------------~l~~l~~L~~L~Ls~N~l---t~i~-----~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         190 ---------------PLASLPNLIEVHLKNNQI---SDVS-----PLANTSNLFIVTLT  225 (227)
T ss_dssp             ---------------GGGGCTTCCEEECTTSCC---CBCG-----GGTTCTTCCEEEEE
T ss_pred             ---------------hhcCCCCCCEEECcCCcC---CCCc-----ccccCCCCCEEEee
Confidence                           145567777777777655   3221     23456677777775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.79  E-value=6.4e-10  Score=90.72  Aligned_cols=77  Identities=16%  Similarity=0.103  Sum_probs=40.6

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEe
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK  196 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~  196 (363)
                      .++++.+..+...  .++ .+..+++|++|+|++|.+...+....+++|+.|++.++.+++  +.. +..+++|+.|.+.
T Consensus        47 ~L~~L~l~~~~i~--~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECT
T ss_pred             CccEEECcCCCCC--Cch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-ccccccccccccc
Confidence            5566655444321  222 244566666666666655544444456666666666665533  221 4455666666666


Q ss_pred             eeE
Q 017981          197 GYI  199 (363)
Q Consensus       197 ~c~  199 (363)
                      +|.
T Consensus       121 ~~~  123 (210)
T d1h6ta2         121 HNG  123 (210)
T ss_dssp             TSC
T ss_pred             ccc
Confidence            554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.71  E-value=1.3e-09  Score=88.90  Aligned_cols=165  Identities=16%  Similarity=0.167  Sum_probs=116.4

Q ss_pred             cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981          139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR  218 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~  218 (363)
                      .+.+|++|.+.++.+...++...+++|++|+|+++.+++-  .. +..+++|++|.+.+|...+. ..+ ...++|+.|.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l--~~-~~~l~~L~~L~l~~n~i~~l-~~l-~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDL-SSL-KDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCG-GGG-TTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCc--cc-cccCcccccccccccccccc-ccc-cccccccccc
Confidence            3678899999999888767777899999999999977653  22 46789999999999876554 211 1247899999


Q ss_pred             EEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcc
Q 017981          219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNI  297 (363)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l  297 (363)
                      +.++.....     .....++.|+.+.++++..... ....+++|+.+.+.......            + .-+.++++|
T Consensus       119 l~~~~~~~~-----~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~------------i-~~l~~l~~L  180 (210)
T d1h6ta2         119 LEHNGISDI-----NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD------------I-VPLAGLTKL  180 (210)
T ss_dssp             CTTSCCCCC-----GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC------------C-GGGTTCTTC
T ss_pred             ccccccccc-----ccccccccccccccccccccccccccccccccccccccccccc------------c-ccccCCCCC
Confidence            988865422     1123567888888887765432 35667888888776443211            1 126788999


Q ss_pred             eEEEEeCCccccccccccccCCCCCCCCCcceEEEEe
Q 017981          298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEG  334 (363)
Q Consensus       298 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~  334 (363)
                      +.|+++++.+   +.+.     .+..+++|+.|+++.
T Consensus       181 ~~L~Ls~N~i---~~l~-----~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         181 QNLYLSKNHI---SDLR-----ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCC---CBCG-----GGTTCTTCSEEEEEE
T ss_pred             CEEECCCCCC---CCCh-----hhcCCCCCCEEEccC
Confidence            9999999887   5442     345677899998864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.2e-09  Score=92.55  Aligned_cols=182  Identities=13%  Similarity=0.127  Sum_probs=90.6

Q ss_pred             cccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEE
Q 017981          142 TLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRL  219 (363)
Q Consensus       142 ~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l  219 (363)
                      +|++|+|+++.+...+  .+..+++|++|+|.++.++.-  . .+..+++|++|+|.+|.+... .......++|+.|++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--Q-VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDV  107 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--E-CCSCCTTCCEEECCSSCCSSC-CCCTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--c-ccccccccccccccccccccc-ccccccccccccccc
Confidence            4555555555544321  233455555555555544321  1 123455555555555543322 111111245555555


Q ss_pred             EecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCc
Q 017981          220 ELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKN  296 (363)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  296 (363)
                      .++.......   ......+++++|.++++....+   .+..++.++.+.+....-..   .        ....+..+++
T Consensus       108 ~~~~~~~~~~---~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~---~--------~~~~~~~l~~  173 (266)
T d1p9ag_         108 SFNRLTSLPL---GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE---L--------PAGLLNGLEN  173 (266)
T ss_dssp             CSSCCCCCCS---STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC---C--------CTTTTTTCTT
T ss_pred             cccccceeec---cccccccccccccccccccceeccccccccccchhcccccccccc---c--------Cccccccccc
Confidence            5554322100   0112345566666665543322   23345566666554332110   0        1233667889


Q ss_pred             ceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC---CChHHHHHHHH
Q 017981          297 IKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA---CGWLSLAHIFS  348 (363)
Q Consensus       297 l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~l~~ll~  348 (363)
                      |+.|+++++.+   ..+..    .+..+.+|+.|.+.+++-   +...++...++
T Consensus       174 L~~L~Ls~N~L---~~lp~----~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~  221 (266)
T d1p9ag_         174 LDTLLLQENSL---YTIPK----GFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ  221 (266)
T ss_dssp             CCEEECCSSCC---CCCCT----TTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred             cceeecccCCC---cccCh----hHCCCCCCCEEEecCCCCCCCcchHHHHHHHH
Confidence            99999999877   54433    344567899999998753   23345666555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.64  E-value=5.8e-10  Score=98.18  Aligned_cols=252  Identities=16%  Similarity=0.059  Sum_probs=145.4

Q ss_pred             ChhhHHHHHHHHH-hCCceEEEEEcCCCc---cccCCcccccCCcccEEEecccccccC------------CCcccCccc
Q 017981          102 DSSRLKLWVSFAT-MRNVREIEISLNDDE---CIELPHCIYTCKTLEVLKLDMNFFIKT------------PPTIFFPSA  165 (363)
Q Consensus       102 ~~~~~~~wi~~~~-~~~l~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~~~~~------------~~~~~~~~L  165 (363)
                      +...+..++.... ...+++|+++.+...   ...+...+...++|+.|++.++.....            .....+++|
T Consensus        16 ~~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L   95 (344)
T d2ca6a1          16 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL   95 (344)
T ss_dssp             CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             CHHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCc
Confidence            3444444444333 246777777543221   123333455677888888876543211            011246778


Q ss_pred             ceeeeeeEEEccc---hHHHHhccCCccceEEEeeeEeCCC-----ceeE--------EEecCCcceEEEEecCCccccC
Q 017981          166 KILHVILNTIDNN---FSDWLFSKCPALEDLSIKGYIYGTD-----SVTL--------NIPSLTLKRLRLELEAPEEDYI  229 (363)
Q Consensus       166 ~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~c~~~~~-----~~~l--------~i~~~~L~~L~l~~~~~~~~~~  229 (363)
                      +.|+|.++.+.+.   .+...+..+++|++|.+.+|.+...     ...+        ....+.|+.+.+.++.......
T Consensus        96 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1          96 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             ccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccc
Confidence            8888888877665   3444556788888888887753210     0000        0123677888877765432200


Q ss_pred             C-ceEEEEeccCcceEEEeecCCCce--------eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEE
Q 017981          230 T-KYKVIIRAPNLEQLYIRDHGPGLY--------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSL  300 (363)
Q Consensus       230 ~-~~~~~~~~p~L~~L~l~~~~~~~~--------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L  300 (363)
                      . ........+.|++|.++++.....        .+...++|+.+++..+.-       .......+...+..+++|+.|
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i-------~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-------THLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-------HHHHHHHHHHHGGGCTTCCEE
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccc-------cccccccccccccccccchhh
Confidence            0 011113457888888887655421        245678888887754431       122223477888999999999


Q ss_pred             EEeCCccccc--cccccccCCCCCCCCCcceEEEEeccCCChHHHH---HHHH-hCCCCcceEEeeecC
Q 017981          301 SLSSGTMFAL--DRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLA---HIFS-RMPKLESIVFEEVRM  363 (363)
Q Consensus       301 ~l~~~~~~~~--~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~---~ll~-~~p~L~~L~l~~~~~  363 (363)
                      .++++.+.+.  ..+...+.  -.....|++|+++++. .+..++.   ..++ ++|+|+.|+|+++++
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~--~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFS--KLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHH--TCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             hhhcCccCchhhHHHHHHhh--hccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            9999876321  11222222  1123569999999986 3555544   3443 789999999988774

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.64  E-value=2.6e-09  Score=86.20  Aligned_cols=161  Identities=13%  Similarity=0.096  Sum_probs=114.4

Q ss_pred             cCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEE
Q 017981          139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR  218 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~  218 (363)
                      .++++++|++.++.+....+...+++|++|+|+++.+++-.  . +.++|+|++|.+.+|..... ..+ -..++|+.|.
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~-~~l-~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADI-TPL-ANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCC-GGG-TTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--c-ccCCcccccccccccccccc-ccc-cccccccccc
Confidence            46788999999988886667778999999999999876542  2 67899999999999875554 221 1348899999


Q ss_pred             EEecCCccccCCceEEEEeccCcceEEEeecCCCcee-eecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcc
Q 017981          219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV-VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNI  297 (363)
Q Consensus       219 l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l  297 (363)
                      +.++.....     .....+++|+.|.++++....+. +..+++|+.+.+..+.-..             ...+.++++|
T Consensus       113 l~~~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~-------------l~~l~~l~~L  174 (199)
T d2omxa2         113 LFNNQITDI-----DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-------------LKPLANLTTL  174 (199)
T ss_dssp             CCSSCCCCC-----GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-------------CGGGTTCTTC
T ss_pred             ccccccccc-----cccchhhhhHHhhhhhhhhcccccccccccccccccccccccC-------------CccccCCCCC
Confidence            988865432     11235689999999988665433 6678888888776543211             1126788999


Q ss_pred             eEEEEeCCccccccccccccCCCCCCCCCcceE
Q 017981          298 KSLSLSSGTMFALDRLDYANDHSFPTFPFLNRL  330 (363)
Q Consensus       298 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L  330 (363)
                      +.|+++++.+   ..+.     .+..+++|++|
T Consensus       175 ~~L~ls~N~i---~~i~-----~l~~L~~L~~L  199 (199)
T d2omxa2         175 ERLDISSNKV---SDIS-----VLAKLTNLESL  199 (199)
T ss_dssp             CEEECCSSCC---CCCG-----GGGGCTTCSEE
T ss_pred             CEEECCCCCC---CCCc-----cccCCCCCCcC
Confidence            9999999987   4433     23355667665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.63  E-value=5.2e-10  Score=96.74  Aligned_cols=128  Identities=9%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             CCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHH
Q 017981          212 LTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVV  288 (363)
Q Consensus       212 ~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~  288 (363)
                      ++|+.+.+.++.......      ...++|++|+++++.....   .+..++.++.+.+....-..           ...
T Consensus       150 ~~L~~l~l~~n~l~~l~~------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~-----------~~~  212 (305)
T d1xkua_         150 KKLSYIRIADTNITTIPQ------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-----------VDN  212 (305)
T ss_dssp             TTCCEEECCSSCCCSCCS------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-----------ECT
T ss_pred             cccCccccccCCccccCc------ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccc-----------ccc
Confidence            456666666654332100      1246677777776544322   23455566666554332110           012


Q ss_pred             HHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCCh--HH--HHHHHHhCCCCcceEEeeecC
Q 017981          289 DMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGW--LS--LAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       289 ~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~--l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      ..+.++++|+.|+++++.+   ..+..    .+..+++|+.|+++.+.-...  ..  ....+...++|+.|.++.+++
T Consensus       213 ~~~~~l~~L~~L~L~~N~L---~~lp~----~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKL---VKVPG----GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCC---SSCCT----TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccccccccceeeecccccc---ccccc----ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            3456788889998888876   44322    345677888888887642111  00  112344567888888887653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.61  E-value=3.6e-09  Score=94.12  Aligned_cols=191  Identities=12%  Similarity=0.122  Sum_probs=126.5

Q ss_pred             ccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcc
Q 017981          136 CIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLK  215 (363)
Q Consensus       136 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~  215 (363)
                      ....++++..+.++++.+...+....+++|++|++.++.+++-.   .+..+++|++|.+.+|.+.+. .. ....++|+
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~  266 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNL-AP-LSGLTKLT  266 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCS
T ss_pred             ccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc---hhhcccccchhccccCccCCC-Cc-ccccccCC
Confidence            34457788888888887775555567788888888888765532   256788888888888775554 21 11247888


Q ss_pred             eEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhcc
Q 017981          216 RLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDI  294 (363)
Q Consensus       216 ~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l  294 (363)
                      .|.+.++.....    . -....+.++.+.+.++..... .+..++.++.+.+....-..            + ..+..+
T Consensus       267 ~L~l~~~~l~~~----~-~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~------------l-~~l~~l  328 (384)
T d2omza2         267 ELKLGANQISNI----S-PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD------------I-SPVSSL  328 (384)
T ss_dssp             EEECCSSCCCCC----G-GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC------------C-GGGGGC
T ss_pred             EeeccCcccCCC----C-ccccccccccccccccccccccccchhcccCeEECCCCCCCC------------C-cccccC
Confidence            888887754321    0 012456677777776654432 25667777777765443210            1 126789


Q ss_pred             CcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeee
Q 017981          295 KNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEV  361 (363)
Q Consensus       295 ~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  361 (363)
                      ++|+.|+++++.+   ..+.     .+..+++|+.|+++++.-.+   +.. +.++|+|+.|+|+.|
T Consensus       329 ~~L~~L~L~~n~l---~~l~-----~l~~l~~L~~L~l~~N~l~~---l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         329 TKLQRLFFANNKV---SDVS-----SLANLTNINWLSAGHNQISD---LTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCCEEECCSSCC---CCCG-----GGGGCTTCCEEECCSSCCCB---CGG-GTTCTTCSEEECCCE
T ss_pred             CCCCEEECCCCCC---CCCh-----hHcCCCCCCEEECCCCcCCC---Chh-hccCCCCCEeeCCCC
Confidence            9999999999876   3332     23456789999998875433   222 688999999999876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.7e-09  Score=90.28  Aligned_cols=147  Identities=17%  Similarity=0.118  Sum_probs=63.6

Q ss_pred             CceEEEEEcCCCccccCCc-ccccCCcccEEEecccccccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          117 NVREIEISLNDDECIELPH-CIYTCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      +++.|+|+.+..  ..+|. .+.++++|++|+++++.+...  .....++.++.+..........--...+.++++|++|
T Consensus        33 ~~~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          33 ASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCcC--CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            455565544432  23343 233456666666666554432  1222344555544432211111001224566666666


Q ss_pred             EEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEe
Q 017981          194 SIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVD  268 (363)
Q Consensus       194 ~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~  268 (363)
                      .+..|.............++|+.+.+.++........   .....++|+.|.++++.....   .+.++++|+.+.+.
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~---~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChh---HhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence            6666553322001111125566666666544321000   001235566666665544322   13344445544443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.2e-09  Score=92.46  Aligned_cols=196  Identities=13%  Similarity=0.015  Sum_probs=127.4

Q ss_pred             CCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEE
Q 017981          140 CKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRL  219 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l  219 (363)
                      ..++...+..+..+...|.. -.++|++|+|.++.++.-. ...+.++++|++|.|.+|.+..+ ... ...++|+.|++
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~-lp~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~l~~l-~~~-~~l~~L~~L~L   84 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDL   84 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEEC
T ss_pred             cCCCeEEEccCCCCCeeCcC-cCcCCCEEECcCCcCCCcC-HHHhhcccccccccccccccccc-ccc-ccccccccccc
Confidence            34455556556555544321 1268999999999775431 23467899999999999875433 111 12489999999


Q ss_pred             EecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCc
Q 017981          220 ELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKN  296 (363)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  296 (363)
                      ++|.....    .......++|++|.++++.....   .+..+++++.+.+.......   +        ....+..+++
T Consensus        85 s~N~l~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~---l--------~~~~~~~l~~  149 (266)
T d1p9ag_          85 SHNQLQSL----PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---L--------PPGLLTPTPK  149 (266)
T ss_dssp             CSSCCSSC----CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---C--------CTTTTTTCTT
T ss_pred             cccccccc----ccccccccccccccccccccceeeccccccccccccccccccccce---e--------cccccccccc
Confidence            99976432    22234578999999998765433   34566777777765443211   0        1334667889


Q ss_pred             ceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          297 IKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       297 l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                      ++.|.++++.+   ..+..  . .+..+.+|++|+++.+.-..   ++.-+...++|+.|.+++|.|
T Consensus       150 l~~l~l~~N~l---~~~~~--~-~~~~l~~L~~L~Ls~N~L~~---lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         150 LEKLSLANNNL---TELPA--G-LLNGLENLDTLLLQENSLYT---IPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCEEECTTSCC---SCCCT--T-TTTTCTTCCEEECCSSCCCC---CCTTTTTTCCCSEEECCSCCB
T ss_pred             chhcccccccc---cccCc--c-ccccccccceeecccCCCcc---cChhHCCCCCCCEEEecCCCC
Confidence            99999999876   43322  1 34567889999999875422   222223578999999998754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.53  E-value=1.3e-08  Score=90.45  Aligned_cols=185  Identities=17%  Similarity=0.118  Sum_probs=129.0

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEe
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK  196 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~  196 (363)
                      +++.+.++.+..  ..++ ....+++|++|++.++.+...+....+++|+.|++.++.+.+-.   -+..+++|++|.+.
T Consensus       198 ~~~~l~l~~n~i--~~~~-~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~  271 (384)
T d2omza2         198 NLESLIATNNQI--SDIT-PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLG  271 (384)
T ss_dssp             TCSEEECCSSCC--CCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECC
T ss_pred             ccceeeccCCcc--CCCC-cccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC---cccccccCCEeecc
Confidence            556665554332  1222 23557899999999998887666778999999999999876542   16789999999999


Q ss_pred             eeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce-eeecCCCceEEEEeeeeceec
Q 017981          197 GYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVHELHSLTKAVVDYGIECIL  275 (363)
Q Consensus       197 ~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~  275 (363)
                      ++...+. .. ....+.++.+.+..+.....     .....+++++.|.++++..... .+..+++|+.+.+..+.-.. 
T Consensus       272 ~~~l~~~-~~-~~~~~~l~~l~~~~n~l~~~-----~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~-  343 (384)
T d2omza2         272 ANQISNI-SP-LAGLTALTNLELNENQLEDI-----SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-  343 (384)
T ss_dssp             SSCCCCC-GG-GTTCTTCSEEECCSSCCSCC-----GGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred             CcccCCC-Cc-cccccccccccccccccccc-----cccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC-
Confidence            8775544 11 11247788888887765322     1124568899999998876654 36889999999887553211 


Q ss_pred             cCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEec
Q 017981          276 DYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV  335 (363)
Q Consensus       276 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~  335 (363)
                                 + ..+.++++|+.|+++++.+   ..+.     ++..+++|+.|+++.+
T Consensus       344 -----------l-~~l~~l~~L~~L~l~~N~l---~~l~-----~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 -----------V-SSLANLTNINWLSAGHNQI---SDLT-----PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             -----------C-GGGGGCTTCCEEECCSSCC---CBCG-----GGTTCTTCSEEECCCE
T ss_pred             -----------C-hhHcCCCCCCEEECCCCcC---CCCh-----hhccCCCCCEeeCCCC
Confidence                       1 1367899999999999876   4322     2446778999988754

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=8.4e-09  Score=75.48  Aligned_cols=38  Identities=34%  Similarity=0.511  Sum_probs=34.8

Q ss_pred             CCcccCCCC----hHHHHHHhcCCChhHhhhhhhhccchhhh
Q 017981            7 TEDRISCLP----NAILCHILSFLPTKYAVATCVLSSTWKLV   44 (363)
Q Consensus         7 ~~d~i~~LP----d~il~~Ils~L~~~d~~~~~~vskrWr~l   44 (363)
                      ..|.|+.||    |||+.+||+|||.+|++++++|||+|+.+
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            358999999    59999999999999999999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.7e-09  Score=82.93  Aligned_cols=122  Identities=15%  Similarity=-0.001  Sum_probs=56.2

Q ss_pred             cCCcccEEEecccccccCCCc-ccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceE
Q 017981          139 TCKTLEVLKLDMNFFIKTPPT-IFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRL  217 (363)
Q Consensus       139 ~~~~L~~L~L~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L  217 (363)
                      ++.+|++|+|++|.+...++. ..+++|++|+|+++.+..-  .. +..+|+|++|.+.+|........+....++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~-~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CC-cccCcchhhhhcccccccCCCccccccccccccc
Confidence            344555555555555543332 2455555555555544321  11 3455555555555554322200111123555555


Q ss_pred             EEEecCCccccCCceEEEEeccCcceEEEeecCCCc------eeeecCCCceEE
Q 017981          218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL------YVVHELHSLTKA  265 (363)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~------~~~~~~~~L~~~  265 (363)
                      .+.+|...+.. .. .....+|+|++|.++++....      ..+..+|+|+.+
T Consensus        93 ~L~~N~i~~~~-~l-~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~L  144 (162)
T d1a9na_          93 ILTNNSLVELG-DL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL  144 (162)
T ss_dssp             ECCSCCCCCGG-GG-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred             eeccccccccc-cc-cccccccccchhhcCCCccccccchHHHHHHHCCCcCee
Confidence            55555433210 00 011245667777766654321      134566777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.8e-09  Score=82.12  Aligned_cols=125  Identities=17%  Similarity=0.058  Sum_probs=64.9

Q ss_pred             CceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEe
Q 017981          117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK  196 (363)
Q Consensus       117 ~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~  196 (363)
                      ++++|+++.+..  ..++.....+++|+.|+|++|.+...+++..+++|++|++++|.++.-. ..++..+|+|++|.+.
T Consensus        19 ~lr~L~L~~n~I--~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCC--CSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCC--CccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCC-ccccccccccccceec
Confidence            455666555443  2334333446667777777766665455556667777777766654321 1234456777777777


Q ss_pred             eeEeCCCceeE-EE-ecCCcceEEEEecCCccccCCceEEEEeccCcceEE
Q 017981          197 GYIYGTDSVTL-NI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLY  245 (363)
Q Consensus       197 ~c~~~~~~~~l-~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~  245 (363)
                      +|..... ..+ .+ ..++|+.|.+.+|...........+...+|+|++|+
T Consensus        96 ~N~i~~~-~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          96 NNSLVEL-GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SCCCCCG-GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccc-ccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6654433 111 11 236677777766654322000011123456666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.36  E-value=9.5e-09  Score=82.62  Aligned_cols=103  Identities=17%  Similarity=0.052  Sum_probs=66.5

Q ss_pred             ceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEee
Q 017981          118 VREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKG  197 (363)
Q Consensus       118 l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~  197 (363)
                      .+++++......-..++..+..+++|++|+|+++.+...++...+++|++|+|+++.+++  +..+...++.|++|.+.+
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccccc
Confidence            444444332221234555667788999999999988866667788999999999998864  223344467899999988


Q ss_pred             eEeCCCceeEEEecCCcceEEEEecCC
Q 017981          198 YIYGTDSVTLNIPSLTLKRLRLELEAP  224 (363)
Q Consensus       198 c~~~~~~~~l~i~~~~L~~L~l~~~~~  224 (363)
                      |..... .. -...++|+.|++++|..
T Consensus       103 N~i~~l-~~-~~~l~~L~~L~L~~N~i  127 (198)
T d1m9la_         103 NQIASL-SG-IEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             EECCCH-HH-HHHHHHSSEEEESEEEC
T ss_pred             cccccc-cc-ccccccccccccccchh
Confidence            875443 11 01125666666666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.8e-08  Score=84.62  Aligned_cols=206  Identities=15%  Similarity=0.100  Sum_probs=125.0

Q ss_pred             cCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE-eCCCceeEE
Q 017981          132 ELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI-YGTDSVTLN  208 (363)
Q Consensus       132 ~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~-~~~~~~~l~  208 (363)
                      .+|..+.  +++++|+|+++.+...+  .+.++++|++|+++++.+..-. ......++.++++....+. .... ....
T Consensus        25 ~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l-~~~~  100 (284)
T d1ozna_          25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSV-DPAT  100 (284)
T ss_dssp             SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCC-CTTT
T ss_pred             ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-cccccccccccccccccccccccc-cchh
Confidence            4454332  56788999988876543  3567888999998887665431 2335667788877665432 1111 1111


Q ss_pred             Ee-cCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeeceeccCCCchhhH
Q 017981          209 IP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVA  284 (363)
Q Consensus       209 i~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~  284 (363)
                      +. .++|+.|.+.++........   .....++|+.+.++++....+   .+..++.|+.+.+....-..   .      
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~---~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~---l------  168 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS---V------  168 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE---E------
T ss_pred             hcccccCCEEecCCccccccccc---ccchhcccchhhhccccccccChhHhccccchhhcccccCcccc---c------
Confidence            12 27888888888765322111   113356788888888765443   25567778877765443211   0      


Q ss_pred             HHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccCCChHHHHHHHHhCCCCcceEEeeecC
Q 017981          285 QAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEVRM  363 (363)
Q Consensus       285 ~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~  363 (363)
                        ....+.++++++.+.++.+..   ..+..  . .+..+++|+.|+++.+.-...  ....+..+++|+.|.++.|+|
T Consensus       169 --~~~~f~~l~~L~~l~l~~N~l---~~i~~--~-~f~~l~~L~~L~l~~N~i~~~--~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         169 --PERAFRGLHSLDRLLLHQNRV---AHVHP--H-AFRDLGRLMTLYLFANNLSAL--PTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             --CTTTTTTCTTCCEEECCSSCC---CEECT--T-TTTTCTTCCEEECCSSCCSCC--CHHHHTTCTTCCEEECCSSCE
T ss_pred             --chhhhccccccchhhhhhccc---cccCh--h-Hhhhhhhcccccccccccccc--cccccccccccCEEEecCCCC
Confidence              123466788888888888765   33221  1 344667788888887654332  234567888888888887653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.25  E-value=2.9e-08  Score=86.96  Aligned_cols=222  Identities=14%  Similarity=0.088  Sum_probs=138.8

Q ss_pred             cCCcccccCCcccEEEecccccccC------CCcccCcccceeeeeeEEEcc------c---hHHHHhccCCccceEEEe
Q 017981          132 ELPHCIYTCKTLEVLKLDMNFFIKT------PPTIFFPSAKILHVILNTIDN------N---FSDWLFSKCPALEDLSIK  196 (363)
Q Consensus       132 ~l~~~~~~~~~L~~L~L~~~~~~~~------~~~~~~~~L~~L~L~~~~~~~------~---~l~~ll~~cp~Le~L~L~  196 (363)
                      .+...+..+.+|+.|+|+++.+...      ......++|+.|++.++....      .   .+...+..|++|++|.|.
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            4445566689999999999877532      234568899999998774321      1   234456789999999999


Q ss_pred             eeEeCCCceeEE-----EecCCcceEEEEecCCccccCC-----ce-----EEEEeccCcceEEEeecCCCce-------
Q 017981          197 GYIYGTDSVTLN-----IPSLTLKRLRLELEAPEEDYIT-----KY-----KVIIRAPNLEQLYIRDHGPGLY-------  254 (363)
Q Consensus       197 ~c~~~~~~~~l~-----i~~~~L~~L~l~~~~~~~~~~~-----~~-----~~~~~~p~L~~L~l~~~~~~~~-------  254 (363)
                      +|..... ....     ..+++|+.|.+.+|........     ..     ......+.|+.+.++++.....       
T Consensus       102 ~n~i~~~-~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~  180 (344)
T d2ca6a1         102 DNAFGPT-AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  180 (344)
T ss_dssp             SCCCCTT-THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             ccccccc-cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc
Confidence            9875442 1111     1358999999998864321000     00     0012457888998887654321       


Q ss_pred             eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEe
Q 017981          255 VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEG  334 (363)
Q Consensus       255 ~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~  334 (363)
                      .+...+.|+.+.+..+.-      ........+...+..+++++.|+++++.+.. +......+ .+..+++|++|++++
T Consensus       181 ~l~~~~~L~~L~L~~n~i------~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~-~g~~~L~~-~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGI------RPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-LGSSALAI-ALKSWPNLRELGLND  252 (344)
T ss_dssp             HHHHCTTCCEEECCSSCC------CHHHHHHHHHTTGGGCTTCCEEECCSSCCHH-HHHHHHHH-HGGGCTTCCEEECTT
T ss_pred             hhhhhhhhcccccccccc------cccccccchhhhhcchhhhcccccccccccc-cccccccc-cccccccchhhhhhc
Confidence            134567888887754331      1222223355667788999999998876521 11111111 344677899999988


Q ss_pred             ccCCChHHHHHH---HHhC--CCCcceEEeeecC
Q 017981          335 VGACGWLSLAHI---FSRM--PKLESIVFEEVRM  363 (363)
Q Consensus       335 ~~~~~~~~l~~l---l~~~--p~L~~L~l~~~~~  363 (363)
                      |.- +..++..+   +..+  +.|++|+|+.+++
T Consensus       253 n~i-~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         253 CLL-SARGAAAVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             CCC-CHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             Ccc-CchhhHHHHHHhhhccCCCCCEEECCCCcC
Confidence            864 55555444   4443  5699999988753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.2e-07  Score=83.97  Aligned_cols=75  Identities=12%  Similarity=0.034  Sum_probs=50.0

Q ss_pred             HHHHHhhccCcceEEEEeCCccccccccccccCCCC-CCCCCcceEEEEeccCCChHH---HHHHHHhCCCCcceEEeee
Q 017981          286 AVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSF-PTFPFLNRLEVEGVGACGWLS---LAHIFSRMPKLESIVFEEV  361 (363)
Q Consensus       286 ~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~---l~~ll~~~p~L~~L~l~~~  361 (363)
                      .+..++...++|+.|+++++.+. ++.+....+ .+ ...+.|++|+++.|. .++.+   +...+..+|+|++|+|+.|
T Consensus       331 ~l~~~~~~~~~L~~L~Ls~N~i~-~~g~~~l~~-~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N  407 (460)
T d1z7xw1         331 HFSSVLAQNRFLLELQISNNRLE-DAGVRELCQ-GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN  407 (460)
T ss_dssp             HHHHHHHHCSSCCEEECCSSBCH-HHHHHHHHH-HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             hcccccccccchhhhheeeeccc-Ccccchhhh-hhhcccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCC
Confidence            46677788889999999987652 111111111 11 134569999999885 46654   4455788999999999887


Q ss_pred             cC
Q 017981          362 RM  363 (363)
Q Consensus       362 ~~  363 (363)
                      ++
T Consensus       408 ~i  409 (460)
T d1z7xw1         408 CL  409 (460)
T ss_dssp             SC
T ss_pred             cC
Confidence            53

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.23  E-value=4.5e-07  Score=77.70  Aligned_cols=198  Identities=15%  Similarity=0.046  Sum_probs=121.5

Q ss_pred             CCceEEEEEcCCCccccC-CcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccc----------------
Q 017981          116 RNVREIEISLNDDECIEL-PHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNN----------------  178 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----------------  178 (363)
                      .++++|.+..+..  ..+ |..+..+++|++|+++++.+...+. ..++.|+.|.+..+.+..-                
T Consensus        55 ~~L~~L~l~~n~~--~~i~~~~f~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~  131 (305)
T d1xkua_          55 KNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL  131 (305)
T ss_dssp             TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred             ccccccccccccc--cccchhhhhCCCccCEecccCCccCcCcc-chhhhhhhhhccccchhhhhhhhhhcccccccccc
Confidence            4777777766553  233 3445567888888888876654321 2233444444444332211                


Q ss_pred             ---------hHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeec
Q 017981          179 ---------FSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH  249 (363)
Q Consensus       179 ---------~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  249 (363)
                               .....+.++++|+.+.+.+|..... .  ....++|++|++.++.......   .....++.++.|.++++
T Consensus       132 ~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~--~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~l~~L~~s~n  205 (305)
T d1xkua_         132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-P--QGLPPSLTELHLDGNKITKVDA---ASLKGLNNLAKLGLSFN  205 (305)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-C--SSCCTTCSEEECTTSCCCEECT---GGGTTCTTCCEEECCSS
T ss_pred             ccccccccCCCccccccccccCccccccCCcccc-C--cccCCccCEEECCCCcCCCCCh---hHhhccccccccccccc
Confidence                     1112355678888888888764333 1  1124789999999886543211   11134578899999887


Q ss_pred             CCCce---eeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCcccccccccc-ccC--CCCCC
Q 017981          250 GPGLY---VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDY-AND--HSFPT  323 (363)
Q Consensus       250 ~~~~~---~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~-~~~--~~~~~  323 (363)
                      .....   .+.++++|+.+++..+.-..            +...+..+++|+.|.++.+.+   +.+.. .+.  .....
T Consensus       206 ~l~~~~~~~~~~l~~L~~L~L~~N~L~~------------lp~~l~~l~~L~~L~Ls~N~i---~~i~~~~f~~~~~~~~  270 (305)
T d1xkua_         206 SISAVDNGSLANTPHLRELHLNNNKLVK------------VPGGLADHKYIQVVYLHNNNI---SAIGSNDFCPPGYNTK  270 (305)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCSSCCSS------------CCTTTTTCSSCCEEECCSSCC---CCCCTTSSSCSSCCTT
T ss_pred             cccccccccccccccceeeecccccccc------------cccccccccCCCEEECCCCcc---CccChhhccCcchhcc
Confidence            66543   35678999999887553211            223367899999999999887   65544 111  13345


Q ss_pred             CCCcceEEEEeccC
Q 017981          324 FPFLNRLEVEGVGA  337 (363)
Q Consensus       324 ~~~L~~L~l~~~~~  337 (363)
                      ..+|+.|++.+++-
T Consensus       271 ~~~L~~L~L~~N~~  284 (305)
T d1xkua_         271 KASYSGVSLFSNPV  284 (305)
T ss_dssp             SCCCSEEECCSSSS
T ss_pred             cCCCCEEECCCCcC
Confidence            67899999988764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=1.3e-07  Score=69.55  Aligned_cols=84  Identities=17%  Similarity=0.175  Sum_probs=47.8

Q ss_pred             cccCCcccEEEecccccccCC-CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeE-E-EecCC
Q 017981          137 IYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTL-N-IPSLT  213 (363)
Q Consensus       137 ~~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l-~-i~~~~  213 (363)
                      +..+++|++|++++|.+...| .+..+++|++|++.++.+++-  .. +..+|+|++|.+.+|..... ..+ . ..+++
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~-~~~l~~L~~L~l~~N~i~~~-~~~~~l~~~~~   91 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DG-VANLPRLQELLLCNNRLQQS-AAIQPLVSCPR   91 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCCSS-STTGGGGGCTT
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc--Cc-cccccccCeEECCCCccCCC-CCchhhcCCCC
Confidence            455677777777777666543 345667777777777766542  22 45667777777777664433 111 1 11355


Q ss_pred             cceEEEEecCC
Q 017981          214 LKRLRLELEAP  224 (363)
Q Consensus       214 L~~L~l~~~~~  224 (363)
                      |+.|++.++..
T Consensus        92 L~~L~l~~N~i  102 (124)
T d1dcea3          92 LVLLNLQGNSL  102 (124)
T ss_dssp             CCEEECTTSGG
T ss_pred             CCEEECCCCcC
Confidence            55555555543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.08  E-value=7.6e-08  Score=83.06  Aligned_cols=84  Identities=13%  Similarity=0.038  Sum_probs=65.7

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      ..++.|++..+..-...+|..+.++++|++|+|++|.+...+  ....++.|+.+++.++.+... +..-+..++.|+.+
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCccccee
Confidence            589999997643323468999999999999999999887542  355788999999999887654 22346789999999


Q ss_pred             EEeeeEe
Q 017981          194 SIKGYIY  200 (363)
Q Consensus       194 ~L~~c~~  200 (363)
                      .+.+|..
T Consensus       155 ~l~~n~l  161 (313)
T d1ogqa_         155 TFDGNRI  161 (313)
T ss_dssp             ECCSSCC
T ss_pred             ecccccc
Confidence            9998763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=1.3e-06  Score=64.08  Aligned_cols=83  Identities=22%  Similarity=0.257  Sum_probs=69.5

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccc-hHHHHhccCCccceEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNN-FSDWLFSKCPALEDLS  194 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~  194 (363)
                      ..+++|+++.+..  ..+|..+..+++|+.|++++|.+...++...+++|++|++.++.+.+- .+. .+..||+|+.|+
T Consensus        20 ~~L~~L~ls~N~l--~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~~-~l~~~~~L~~L~   96 (124)
T d1dcea3          20 LLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLN   96 (124)
T ss_dssp             TTCCEEECCSSCC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEE
T ss_pred             CCCCEEECCCCcc--CcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCCCCch-hhcCCCCCCEEE
Confidence            5899999987664  367877888999999999999999777788999999999999998764 333 367899999999


Q ss_pred             EeeeEeC
Q 017981          195 IKGYIYG  201 (363)
Q Consensus       195 L~~c~~~  201 (363)
                      +.++.+.
T Consensus        97 l~~N~i~  103 (124)
T d1dcea3          97 LQGNSLC  103 (124)
T ss_dssp             CTTSGGG
T ss_pred             CCCCcCC
Confidence            9997743

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=2.4e-06  Score=70.30  Aligned_cols=82  Identities=16%  Similarity=0.110  Sum_probs=45.0

Q ss_pred             CCceEEEEEcCCCccccCCcc-cccCCcccEEEecccccccC---CCcccCcccceeeeeeEE-EccchHHHHhccCCcc
Q 017981          116 RNVREIEISLNDDECIELPHC-IYTCKTLEVLKLDMNFFIKT---PPTIFFPSAKILHVILNT-IDNNFSDWLFSKCPAL  190 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~---~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~L  190 (363)
                      +++++|+++....  ..+|.. +.++++|++|+++++.+...   ..+..++++++|.+..+. .... ....+.++++|
T Consensus        29 ~~l~~L~Ls~n~i--~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~-~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCCC--CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE-CTTSEECCTTC
T ss_pred             CCCCEEECcCCcC--CccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc-ccccccccccc
Confidence            4677777765543  234443 34577777777777655432   123456666666655431 1111 12335667777


Q ss_pred             ceEEEeeeEe
Q 017981          191 EDLSIKGYIY  200 (363)
Q Consensus       191 e~L~L~~c~~  200 (363)
                      ++|.+.++..
T Consensus       106 ~~l~l~~~~l  115 (242)
T d1xwdc1         106 QYLLISNTGI  115 (242)
T ss_dssp             CEEEEESCCC
T ss_pred             cccccchhhh
Confidence            7777777654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.68  E-value=3.3e-06  Score=66.95  Aligned_cols=107  Identities=14%  Similarity=-0.001  Sum_probs=62.0

Q ss_pred             CcccEEEeccccccc-C--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceE
Q 017981          141 KTLEVLKLDMNFFIK-T--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRL  217 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~-~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L  217 (363)
                      +++++|+|+++.+.. .  ..+..+++|+.|+|.++.+..- ....+...+.|++|.|.+|....+........++|+.|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence            567777777776643 1  2334677777777777765433 12335567777777777776433201111123677777


Q ss_pred             EEEecCCccccCCceEEEEeccCcceEEEeecCC
Q 017981          218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP  251 (363)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  251 (363)
                      ++.++.......+.   ....++|++|.++++..
T Consensus       108 ~L~~N~l~~i~~~~---f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         108 NLYDNQISCVMPGS---FEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ECCSSCCCEECTTS---STTCTTCCEEECTTCCB
T ss_pred             ccCCccccccCHHH---hcCCccccccccccccc
Confidence            77777654321111   12457888888887643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.4e-05  Score=65.44  Aligned_cols=92  Identities=13%  Similarity=0.054  Sum_probs=59.2

Q ss_pred             cCCcccccCCcccEEEecccccccCC--CcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeE-eCCCceeEE
Q 017981          132 ELPHCIYTCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI-YGTDSVTLN  208 (363)
Q Consensus       132 ~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~-~~~~~~~l~  208 (363)
                      .+|..+.  +++++|+|+++.+...+  .+.++++|++|+|.++.+...--...+.+++.+++|.+..+. .........
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            5565443  57899999998876543  356899999999998855432001225678999999887653 111101112


Q ss_pred             EecCCcceEEEEecCCc
Q 017981          209 IPSLTLKRLRLELEAPE  225 (363)
Q Consensus       209 i~~~~L~~L~l~~~~~~  225 (363)
                      ...++|+.|.+.++...
T Consensus       100 ~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             ECCTTCCEEEEESCCCC
T ss_pred             cccccccccccchhhhc
Confidence            33588999999888654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.60  E-value=6.7e-06  Score=65.09  Aligned_cols=126  Identities=17%  Similarity=0.057  Sum_probs=79.0

Q ss_pred             ccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEEec
Q 017981          143 LEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELE  222 (363)
Q Consensus       143 L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~~~  222 (363)
                      .+.++.++..+...|.. -.+++++|+|+++.++...-...+.+.++|++|.|.++.............++|+.|++++|
T Consensus        10 ~~~v~Cs~~~L~~iP~~-lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEEeCCCcCccCCC-CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            34566666666544432 24678889999888754322334667888999998887644330111112378888888888


Q ss_pred             CCccccCCceEEEEeccCcceEEEeecCCCce---eeecCCCceEEEEeeeec
Q 017981          223 APEEDYITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAVVDYGIE  272 (363)
Q Consensus       223 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~l~~~~~  272 (363)
                      ........   .-...++|++|+++++....+   .+..+++|+.+.+...+.
T Consensus        89 ~l~~l~~~---~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          89 KIKEISNK---MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCEECSS---SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccCHH---HHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            65432111   113468888998888876544   356778888887765543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=6.5e-07  Score=80.79  Aligned_cols=38  Identities=11%  Similarity=0.165  Sum_probs=17.2

Q ss_pred             CcccceeeeeeEEEccchH---HHHhccCCccceEEEeeeE
Q 017981          162 FPSAKILHVILNTIDNNFS---DWLFSKCPALEDLSIKGYI  199 (363)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~l---~~ll~~cp~Le~L~L~~c~  199 (363)
                      +++|++|+|.+|.+++.++   ...+..||+|++|+|.+|.
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~   66 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE   66 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc
Confidence            4444555555554443322   2223445555555554443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=4.6e-05  Score=57.85  Aligned_cols=72  Identities=11%  Similarity=0.033  Sum_probs=45.7

Q ss_pred             ccCCcccccCCcccEEEecccc-cccC--CCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCC
Q 017981          131 IELPHCIYTCKTLEVLKLDMNF-FIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTD  203 (363)
Q Consensus       131 ~~l~~~~~~~~~L~~L~L~~~~-~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~  203 (363)
                      ...|..+...++|++|++.++. +...  ..+.++++|+.|+|.++.+..-. ...+.+.++|++|+|.+|.+..+
T Consensus        21 ~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~l   95 (156)
T d2ifga3          21 LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESL   95 (156)
T ss_dssp             CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCC
T ss_pred             ccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCCCccc
Confidence            3455556667788888886553 4432  23556778888888877654321 23366778888888887765443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.11  E-value=2.7e-05  Score=61.76  Aligned_cols=103  Identities=17%  Similarity=0.143  Sum_probs=77.0

Q ss_pred             hCCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcc-cCcccceeeeeeEEEccchHHHHhccCCccceE
Q 017981          115 MRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTI-FFPSAKILHVILNTIDNNFSDWLFSKCPALEDL  193 (363)
Q Consensus       115 ~~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  193 (363)
                      ..++++|+++.+...  .++ .+..+++|++|+|++|.+...++.. .+++|+.|++.++.++.  +.. +..+++|+.|
T Consensus        47 L~~L~~L~Ls~n~I~--~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSG-IEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEES--CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HHH-HHHHHHSSEE
T ss_pred             ccccceeECcccCCC--Ccc-cccCCccccChhhcccccccccccccccccccccccccccccc--ccc-cccccccccc
Confidence            468999999655432  344 4677999999999999988655543 46789999999998865  322 5678999999


Q ss_pred             EEeeeEeCCCceeE-EEe-cCCcceEEEEecCC
Q 017981          194 SIKGYIYGTDSVTL-NIP-SLTLKRLRLELEAP  224 (363)
Q Consensus       194 ~L~~c~~~~~~~~l-~i~-~~~L~~L~l~~~~~  224 (363)
                      .+.+|.+... ..+ .+. .++|+.|.+.+|..
T Consensus       121 ~L~~N~i~~~-~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         121 YMSNNKITNW-GEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EESEEECCCH-HHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccchhccc-cccccccCCCccceeecCCCcc
Confidence            9999986554 222 222 48999999999854

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.99  E-value=0.00018  Score=61.88  Aligned_cols=131  Identities=24%  Similarity=0.157  Sum_probs=76.9

Q ss_pred             CCceEEEEEcCCCccccCCcccccCCcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccC-CccceEE
Q 017981          116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKC-PALEDLS  194 (363)
Q Consensus       116 ~~l~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~c-p~Le~L~  194 (363)
                      .++++|+++....  ..+|..   .++|++|+|+++.+...|.  .+++|++|++.++.++.  +    ..+ +.|++|+
T Consensus        38 ~~l~~LdLs~~~L--~~lp~~---~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~l~~n~l~~--l----~~lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGL--SSLPEL---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKA--L----SDLPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCC--SCCCSC---CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSC--C----CSCCTTCCEEE
T ss_pred             cCCCEEEeCCCCC--CCCCCC---CCCCCEEECCCCCCccccc--chhhhhhhhhhhcccch--h----hhhcccccccc
Confidence            4788888765553  356642   4688899998888775543  35688888888876542  1    223 4688888


Q ss_pred             EeeeEeCCCceeEEEecCCcceEEEEecCCccccCCceEEEEeccCcceEEEeecCCCc-eeeecCCCceEEEEe
Q 017981          195 IKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL-YVVHELHSLTKAVVD  268 (363)
Q Consensus       195 L~~c~~~~~~~~l~i~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~L~~~~l~  268 (363)
                      +.+|.+... ... ...++|+.|++.++.....       ....+.+..+.+....... ..++.++.++.+.+.
T Consensus       105 L~~n~l~~l-p~~-~~l~~L~~L~l~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_         105 VSNNQLEKL-PEL-QNSSFLKIIDVDNNSLKKL-------PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD  170 (353)
T ss_dssp             CCSSCCSSC-CCC-TTCTTCCEEECCSSCCSCC-------CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred             ccccccccc-cch-hhhccceeecccccccccc-------ccccccccchhhccccccccccccccccceecccc
Confidence            888876554 221 2347888888877754321       1223455555554432221 223344445544443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.72  E-value=0.00018  Score=61.79  Aligned_cols=136  Identities=11%  Similarity=0.020  Sum_probs=86.8

Q ss_pred             CcccEEEecccccccCCCcccCcccceeeeeeEEEccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceEEEE
Q 017981          141 KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLE  220 (363)
Q Consensus       141 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L~l~  220 (363)
                      .+|++|+|+++.+...|.  ..++|++|+|+++.++.=     -....+|++|.+.++....+ ..   -.+.|+.|++.
T Consensus        38 ~~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~~l-----p~~~~~L~~L~l~~n~l~~l-~~---lp~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLTEL-----PELPQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSSC-----CCCCTTCCEEECCSSCCSCC-CS---CCTTCCEEECC
T ss_pred             cCCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCccc-----ccchhhhhhhhhhhcccchh-hh---hcccccccccc
Confidence            579999999998875553  468999999999876532     22357899999999875544 21   23679999999


Q ss_pred             ecCCccccCCceEEEEeccCcceEEEeecCCCceeeecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEE
Q 017981          221 LEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSL  300 (363)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L  300 (363)
                      +|.....    .. ...+++|+.|.++++..... ....+.+..+.+.......             ...+..++.++.|
T Consensus       107 ~n~l~~l----p~-~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~l~~~~~~~~~-------------~~~l~~l~~l~~L  167 (353)
T d1jl5a_         107 NNQLEKL----PE-LQNSSFLKIIDVDNNSLKKL-PDLPPSLEFIAAGNNQLEE-------------LPELQNLPFLTAI  167 (353)
T ss_dssp             SSCCSSC----CC-CTTCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSS-------------CCCCTTCTTCCEE
T ss_pred             ccccccc----cc-hhhhccceeecccccccccc-ccccccccchhhccccccc-------------cccccccccceec
Confidence            9876532    11 23568999999987654322 1223444444443222111             1113456677777


Q ss_pred             EEeCCc
Q 017981          301 SLSSGT  306 (363)
Q Consensus       301 ~l~~~~  306 (363)
                      .+....
T Consensus       168 ~l~~n~  173 (353)
T d1jl5a_         168 YADNNS  173 (353)
T ss_dssp             ECCSSC
T ss_pred             cccccc
Confidence            776543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.00017  Score=54.57  Aligned_cols=105  Identities=12%  Similarity=-0.044  Sum_probs=59.4

Q ss_pred             CCcccEEEecccccccCC-CcccCcccceeeeeeEE-EccchHHHHhccCCccceEEEeeeEeCCCceeEEEecCCcceE
Q 017981          140 CKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNT-IDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRL  217 (363)
Q Consensus       140 ~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~l~i~~~~L~~L  217 (363)
                      |.....++..+......+ ....+++|++|++.++. ++.-. ...+.+.++|+.|+|.+|....+........++|+.|
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccC-chhhccccccCcceeeccccCCcccccccccccccce
Confidence            445566776666555433 44578899999997653 33211 1236788999999999886433200111123677777


Q ss_pred             EEEecCCccccCCceEEEEeccCcceEEEeec
Q 017981          218 RLELEAPEEDYITKYKVIIRAPNLEQLYIRDH  249 (363)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  249 (363)
                      ++++|.........    ...++|++|.++++
T Consensus        86 ~Ls~N~l~~l~~~~----~~~~~l~~L~L~~N  113 (156)
T d2ifga3          86 NLSFNALESLSWKT----VQGLSLQELVLSGN  113 (156)
T ss_dssp             ECCSSCCSCCCSTT----TCSCCCCEEECCSS
T ss_pred             eccCCCCcccChhh----hccccccccccCCC
Confidence            77777654321111    12334555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.25  E-value=0.0013  Score=50.09  Aligned_cols=74  Identities=8%  Similarity=0.103  Sum_probs=50.9

Q ss_pred             HHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEeccC--CCh---HHHHHHHHhCCCCcceEEee
Q 017981          286 AVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA--CGW---LSLAHIFSRMPKLESIVFEE  360 (363)
Q Consensus       286 ~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~--~~~---~~l~~ll~~~p~L~~L~l~~  360 (363)
                      .+...+...+.|+.|.++++.+.+ +.+...++ .+..-+.|++|++..+..  .+.   ..+...++..+.|++|.++.
T Consensus        63 ~la~~L~~n~~L~~L~L~~n~i~~-~g~~~l~~-aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          63 GLIELIETSPSLRVLNVESNFLTP-ELLARLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             THHHHHHHCSSCCEEECCSSBCCH-HHHHHHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHhhhhhhcccccceeeehhhcch-HHHHHHHH-HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            377778888999999999886632 22222222 344567799999987642  233   34777888899999998876


Q ss_pred             e
Q 017981          361 V  361 (363)
Q Consensus       361 ~  361 (363)
                      +
T Consensus       141 ~  141 (167)
T d1pgva_         141 A  141 (167)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.10  E-value=0.0019  Score=49.06  Aligned_cols=96  Identities=16%  Similarity=0.144  Sum_probs=61.1

Q ss_pred             cCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEecc-
Q 017981          258 ELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG-  336 (363)
Q Consensus       258 ~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~-  336 (363)
                      ..+.|+++++..+..       .......+...+...+.++.|.++.+...+ +.+....+ .+...++|+.+++..+. 
T Consensus        44 ~n~~L~~L~Ls~n~l-------~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~-~g~~~l~~-~l~~~~~L~~l~L~l~~n  114 (166)
T d1io0a_          44 TNTYVKKFSIVGTRS-------NDPVAFALAEMLKVNNTLKSLNVESNFISG-SGILALVE-ALQSNTSLIELRIDNQSQ  114 (166)
T ss_dssp             TCCSCCEEECTTSCC-------CHHHHHHHHHHHHHCSSCCEEECCSSCCCH-HHHHHHHH-GGGGCSSCCEEECCCCSS
T ss_pred             cCCccCeeeccCCcc-------cHHHHHHHHHHHhhcccchhhhhccccccc-hhHHHHHH-HHHhCccccEEeeccCCC
Confidence            455666665554322       233344577888888999999998876521 22222223 44466778888887654 


Q ss_pred             CCChH---HHHHHHHhCCCCcceEEeeec
Q 017981          337 ACGWL---SLAHIFSRMPKLESIVFEEVR  362 (363)
Q Consensus       337 ~~~~~---~l~~ll~~~p~L~~L~l~~~~  362 (363)
                      ..++.   .+...++.+++|++|+++.++
T Consensus       115 ~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         115 PLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            23444   466678899999999987653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.90  E-value=0.0014  Score=49.81  Aligned_cols=62  Identities=13%  Similarity=0.080  Sum_probs=33.2

Q ss_pred             ccCCcccEEEecccccccC--CC----cccCcccceeeeeeEEEccchHH---HHhccCCccceEEEeeeE
Q 017981          138 YTCKTLEVLKLDMNFFIKT--PP----TIFFPSAKILHVILNTIDNNFSD---WLFSKCPALEDLSIKGYI  199 (363)
Q Consensus       138 ~~~~~L~~L~L~~~~~~~~--~~----~~~~~~L~~L~L~~~~~~~~~l~---~ll~~cp~Le~L~L~~c~  199 (363)
                      ..+++|++|+|++|.+.+.  ..    ....+.|++|+|.++.+.++++.   ..+..+++|++|.+.++.
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            3455666666666655421  11    11355666666666666655333   334556666666666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.00058  Score=51.86  Aligned_cols=39  Identities=21%  Similarity=0.206  Sum_probs=18.0

Q ss_pred             CcccceeeeeeEEEccc-hHHHHhccCCccceEEEeeeEe
Q 017981          162 FPSAKILHVILNTIDNN-FSDWLFSKCPALEDLSIKGYIY  200 (363)
Q Consensus       162 ~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~c~~  200 (363)
                      +++|++|+|+++.+++- ++...+.+||+|+.|+|++|..
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i  103 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL  103 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCC
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcc
Confidence            44444455544444332 3333344455555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.97  E-value=0.014  Score=43.92  Aligned_cols=95  Identities=12%  Similarity=0.058  Sum_probs=59.6

Q ss_pred             ecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEecc
Q 017981          257 HELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG  336 (363)
Q Consensus       257 ~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~  336 (363)
                      .+.|.|+++.+......      .......+...+...++|++|.++++.+.. +.+....+ .+.....++.+++..+.
T Consensus        14 ~~~~~L~~L~L~~~~~i------~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~-~~~~~L~~-~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNI------PVPTLKACAEALKTNTYVKKFSIVGTRSND-PVAFALAE-MLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             TTCTTCCEEECTTCTTC------CHHHHHHHHHHHTTCCSCCEEECTTSCCCH-HHHHHHHH-HHHHCSSCCEEECCSSC
T ss_pred             hcCCCCcEEEcCCCCCC------CHHHHHHHHHHHhcCCccCeeeccCCcccH-HHHHHHHH-HHhhcccchhhhhcccc
Confidence            45688998887532211      223333477778888999999999986532 22222112 22345678889888765


Q ss_pred             CCChHHHH---HHHHhCCCCcceEEee
Q 017981          337 ACGWLSLA---HIFSRMPKLESIVFEE  360 (363)
Q Consensus       337 ~~~~~~l~---~ll~~~p~L~~L~l~~  360 (363)
                      . +.+++.   ..+..+++|+.++|+.
T Consensus        86 ~-~~~g~~~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          86 I-SGSGILALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             C-CHHHHHHHHHGGGGCSSCCEEECCC
T ss_pred             c-cchhHHHHHHHHHhCccccEEeecc
Confidence            4 555554   4556788899877764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.012  Score=44.17  Aligned_cols=86  Identities=16%  Similarity=0.139  Sum_probs=50.3

Q ss_pred             ecCCCceEEEEeeeeceeccCCCchhhHHHHHHHhhccCcceEEEEeCCccccccccccccCCCCCCCCCcceEEEEecc
Q 017981          257 HELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG  336 (363)
Q Consensus       257 ~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~l~~~~~~~~~~~~~L~~L~l~~~~  336 (363)
                      ..++.|+.+++..+.-..   .+      .+...+..+++|+.|+++++.+   ..+....  .. ...+|++|.+.+++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~---l~------~~~~~~~~l~~L~~L~Ls~N~i---~~l~~l~--~l-~~~~L~~L~L~~Np  126 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYR---LD------DMSSIVQKAPNLKILNLSGNEL---KSERELD--KI-KGLKLEELWLDGNS  126 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCC---CS------GGGTHHHHSTTCCCCCCTTSCC---CCGGGHH--HH-TTCCCSSCCCTTST
T ss_pred             HhCCCCCEeeCCCccccC---Cc------hhHHHHhhCCcccccccccCcc---ccchhhh--hh-hccccceeecCCCC
Confidence            457777777665443211   00      1334566778888888888776   4433310  01 12347888887764


Q ss_pred             CCC-----hHHHHHHHHhCCCCcceE
Q 017981          337 ACG-----WLSLAHIFSRMPKLESIV  357 (363)
Q Consensus       337 ~~~-----~~~l~~ll~~~p~L~~L~  357 (363)
                      -..     ......+++.+|+|+.|+
T Consensus       127 l~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         127 LSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCcCcccchhHHHHHHHHCCCCCEEC
Confidence            321     245667788889988774