Citrus Sinensis ID: 017983

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRPTGGET
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHccccHHHHccccccccccccccEEccccccccccccccccEEEEccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccEEEEccccccEEEEEccccccccccHHccccccccccccccccccccccHHHHHHHccccccccccccEEEEEEcccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEEcEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHccccEEEEEHcccccccccccEEEHEcccccccccccccEEEEEEHHEcccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHEEEccccccEEEEEEEcccccHHHHHcccccccccccccccccccEcccHHcccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEHEEcHcccHHHHHHHccccEEEEEEEcccccccccEEEcccEEEEEcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccEEEEEccEEEEEEEEcEccccccc
Coil and Loop (DISEMBL)
MSLAPKDEHEAQIQFALERGIPAILSvigtqkltfpddaydlihcarcrvhwdaqggkpllelnrilrpggffiwsatpvyrhddrhrSVWNAMVNLTESMCWKAVARSvdsnrigfviyqkpvsyscyknreentpplcdgknnlnsswhvplsncisrlptdskgnlhswpapwpqrlsskppslppdseeafnkdttHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAaalidqplwvmnvvpidapdtlsiiFDRGLIGMYHDWcesfntyprtydLLHSSfllsdvtqrcdIADVAVEMDrilrpggyvLVQDTLEMINKLKPVLHSLQWStniyhdqflvgkkgfwrptgget
Flexible Loop (DISEMBL)
MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKgfwrptgget
Low Complexity Region (SEG)
MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRlsskppslppdsEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRPTGGET
Disordered region (IsUnstruct)
************IQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKA*********IGFVIYQKPVSYSCYKN********C****NLNSSWHVPLSNCISR*************************************DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWR******
Disordered Region (DISOPRED)
*******EHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV************AMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSY*****************NNLNSSWHVPLSNCISR*************************SLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKG**RP*****
Disordered Region (DISEMBL)
*********EAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWP****************AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRPTGGET
Disordered Region (DISPRO)
**LAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSK*NLHSWPAPWPQRLSSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRPTGGET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q9SIZ3	589	Probable methyltransferas	yes	no	0.986	0.607	0.690	1e-151
Q9LYN3	610	Probable methyltransferas	no	no	0.975	0.580	0.648	1e-141
Q6NPR7	770	Probable methyltransferas	no	no	1.0	0.471	0.522	1e-118
Q0WT31	770	Probable methyltransferas	no	no	0.994	0.468	0.519	1e-117
Q8L7V3	829	Probable methyltransferas	no	no	1.0	0.437	0.513	1e-114
Q9SD39	895	Probable methyltransferas	no	no	0.975	0.395	0.506	1e-112
Q9LN50	724	Probable methyltransferas	no	no	0.964	0.483	0.456	7e-93
Q9FG39	682	Probable methyltransferas	no	no	0.914	0.486	0.445	5e-88
O22285	694	Probable methyltransferas	no	no	0.925	0.484	0.450	1e-87
Q94KE1	655	Probable methyltransferas	no	no	0.928	0.514	0.431	1e-86

>sp|Q9SIZ3|PMTN_ARATH Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2

 Score =  535 bits (1377), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 250/362 (69%), Positives = 290/362 (80%), Gaps = 4/362 (1%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA LSVIGTQ+LTFP +A+DLIHCARCRVHWDA GGKPL
Sbjct: 230 MSFAPKDEHEAQIQFALERGIPATLSVIGTQQLTFPSNAFDLIHCARCRVHWDADGGKPL 289

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
           LELNR+LRPGGFFIWSATPVYR +DR   +WN MV+LT+S+CWK V ++VDS+ IG VIY
Sbjct: 290 LELNRVLRPGGFFIWSATPVYRDNDRDSRIWNEMVSLTKSICWKVVTKTVDSSGIGLVIY 349

Query: 121 QKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL 180
           QKP S SCY  R    PPLCD K   N SW+VPL+ C+S+LP+   GN+ SWP  WP+RL
Sbjct: 350 QKPTSESCYNKRSTQDPPLCD-KKEANGSWYVPLAKCLSKLPS---GNVQSWPELWPKRL 405

Query: 181 SSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALID 240
            S  P       E   KDT  W A VSDVY+  LA+NWS+VRNVMDMNA +GGFAAALI+
Sbjct: 406 VSVKPQSISVKAETLKKDTEKWSASVSDVYLKHLAVNWSTVRNVMDMNAGFGGFAAALIN 465

Query: 241 QPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCD 300
            PLWVMNVVP+D PDTLS+++DRGLIG+YHDWCES NTYPRTYDLLHSSFLL D+TQRC+
Sbjct: 466 LPLWVMNVVPVDKPDTLSVVYDRGLIGVYHDWCESVNTYPRTYDLLHSSFLLGDLTQRCE 525

Query: 301 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRPTG 360
           I  V  E+DRI+RPGGY++VQD +E I KL+ +L SL WST IY D+FLVG+KGFWRP  
Sbjct: 526 IVQVVAEIDRIVRPGGYLVVQDNMETIMKLESILGSLHWSTKIYEDRFLVGRKGFWRPAK 585

Query: 361 GE 362
            E
Sbjct: 586 PE 587

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1

 Score =  502 bits (1292), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/361 (64%), Positives = 290/361 (80%), Gaps = 7/361 (1%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA L+VIGTQKL FPD+AYD+IHCARCRVHW   GG+PL
Sbjct: 254 MSFAPKDEHEAQIQFALERGIPATLAVIGTQKLPFPDNAYDVIHCARCRVHWHGYGGRPL 313

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
           LELNR+LRPGGFF+WSATPVY+HD+ HR+VW  M +LT SMCWK VAR+    ++GFVIY
Sbjct: 314 LELNRVLRPGGFFVWSATPVYQHDEGHRNVWKTMESLTTSMCWKVVART-RFTKVGFVIY 372

Query: 121 QKPVSYSCYKNREENTPPLC-DGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
           QKP S SCY++R+   PPLC + +   NSSW+ PL  C+ +LP    G    WP+ WP+R
Sbjct: 373 QKPDSDSCYESRKNKDPPLCIEEETKKNSSWYTPLLTCLPKLPVSPIGK---WPSGWPER 429

Query: 180 LSSKPPSLPPD--SEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAA 237
           L+  P SL  +  SEE+F +D+  W  ++S++Y+  LAINW+ + NVMDMNA YGGFAAA
Sbjct: 430 LTETPVSLFREQRSEESFREDSKLWSGVMSNIYLYSLAINWTRIHNVMDMNAGYGGFAAA 489

Query: 238 LIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 297
           LI++PLWVMNV+P++  DTLS IFDRGLIG+YHDWCESFNTYPR+YDLLHSSFL ++++Q
Sbjct: 490 LINKPLWVMNVIPVEGEDTLSTIFDRGLIGIYHDWCESFNTYPRSYDLLHSSFLFTNLSQ 549

Query: 298 RCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWR 357
           RCD+ +V VE+DRILRPGGY+ VQDT+EM+ KL P+L SL+WSTN+Y  +FLVG K  WR
Sbjct: 550 RCDLMEVVVEIDRILRPGGYLAVQDTVEMLKKLNPILLSLRWSTNLYRGKFLVGLKSSWR 609

Query: 358 P 358
           P
Sbjct: 610 P 610

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/375 (52%), Positives = 257/375 (68%), Gaps = 12/375 (3%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           +S APKDEHEAQ+QFALERGIPA+ +V+GT++L FP   +DLIHCARCRV W  +GGK L
Sbjct: 390 LSFAPKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKLL 449

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDS-NRIGFVI 119
           LELNR LRPGGFF+WSATPVYR  +    +W AM  LT++MCW+ +    D  N +G  I
Sbjct: 450 LELNRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTKAMCWELMTIKKDELNEVGAAI 509

Query: 120 YQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
           YQKP+S  CY  R +N PPLC   ++ N++W+VPL  CI ++  DS      WP  WP+R
Sbjct: 510 YQKPMSNKCYNERSQNEPPLCKDSDDQNAAWNVPLEACIHKVTEDSSKRGAVWPESWPER 569

Query: 180 LSSKPPSLPPD-------SEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYG 232
           + + P  L          ++E F  D   W  +VS  Y+ G+ I+WS VRNVMDM A YG
Sbjct: 570 VETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSYLNGMGIDWSYVRNVMDMRAVYG 629

Query: 233 GFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLL 292
           GFAAAL D  LWVMNVVPID+PDTL II++RGL G+YHDWCESF+TYPRTYDLLH+  L 
Sbjct: 630 GFAAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLF 689

Query: 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQ----F 348
           S + +RC++  V  E+DRILRP G  +V+D +E I +++ ++ S++W+  + H +     
Sbjct: 690 SSLKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIGEIEKMVKSMKWNVRMTHSKDGEGL 749

Query: 349 LVGKKGFWRPTGGET 363
           L  +K +WRPT  ET
Sbjct: 750 LSVQKSWWRPTEAET 764

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2

 Score =  422 bits (1084), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 196/377 (51%), Positives = 256/377 (67%), Gaps = 16/377 (4%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           +S APKDEHEAQ+QFALERGIPA+L+V+GT++L FP   +DLIHCARCRV W  +GGK L
Sbjct: 390 LSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKLL 449

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDS-NRIGFVI 119
           LELNR LRPGGFF+WSATPVYR ++    +W AM  LT++MCWK V    D  N +G  I
Sbjct: 450 LELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELTKAMCWKLVTIKKDKLNEVGAAI 509

Query: 120 YQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
           YQKP S  CY  R +N PPLC   ++ N++W+VPL  C+ ++  DS      WP  WP+R
Sbjct: 510 YQKPTSNKCYNKRPQNEPPLCKDSDDQNAAWNVPLEACMHKVTEDSSKRGAVWPNMWPER 569

Query: 180 LSSKPPSLPPDSEEA---------FNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNAS 230
           + + P  L  DS+E          F  D   W  +VS  Y+  + I+WS+VRNVMDM A 
Sbjct: 570 VETAPEWL--DSQEGVYGKPAPEDFTADQEKWKTIVSKAYLNDMGIDWSNVRNVMDMRAV 627

Query: 231 YGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSF 290
           YGGFAAAL D  LWVMNVVP+DAPDTL II++RGL G+YHDWCESFNTYPRTYDLLH+  
Sbjct: 628 YGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYHDWCESFNTYPRTYDLLHADH 687

Query: 291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQ--- 347
           L S + +RC++  V  E+DRILRP G  +++D +E + +++ ++ S++W   +   +   
Sbjct: 688 LFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGEVEKMVKSMKWKVKMTQSKDNE 747

Query: 348 -FLVGKKGFWRPTGGET 363
             L  +K +WRP   ET
Sbjct: 748 GLLSIEKSWWRPEETET 764

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1

 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/376 (51%), Positives = 253/376 (67%), Gaps = 13/376 (3%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MSLAPKDEHEAQ+QFALERGIPAI +V+GT +L FP   +D++HCARCRV W  +GGK L
Sbjct: 448 MSLAPKDEHEAQVQFALERGIPAISAVMGTTRLPFPGRVFDIVHCARCRVPWHIEGGKLL 507

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDS-NRIGFVI 119
           LELNR+LRPGGFF+WSATPVY+       +W AM  L + MCW+ V+ + D+ N +G   
Sbjct: 508 LELNRVLRPGGFFVWSATPVYQKKTEDVEIWKAMSELIKKMCWELVSINKDTINGVGVAT 567

Query: 120 YQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
           Y+KP S  CYKNR E  PP+C   ++ N+SW VPL  C+   P D       WP  WP R
Sbjct: 568 YRKPTSNECYKNRSEPVPPICADSDDPNASWKVPLQACMHTAPEDKTQRGSQWPEQWPAR 627

Query: 180 LSSKPPSLPPD--------SEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASY 231
           L   P  L           + E F+ D  HW  +V+  Y+ GL INW+SVRNVMDM A Y
Sbjct: 628 LEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKSYLNGLGINWASVRNVMDMRAVY 687

Query: 232 GGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFL 291
           GGFAAAL D  +WVMNVVPID+PDTL+II++RGL G+YHDWCESF+TYPR+YDLLH+  L
Sbjct: 688 GGFAAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIYHDWCESFSTYPRSYDLLHADHL 747

Query: 292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVG 351
            S + QRC++  V  E+DR+LRP G ++V+D  E I +++ ++ +++W   + + +   G
Sbjct: 748 FSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQQVEGMVKAMKWEVRMTYSKEKEG 807

Query: 352 ----KKGFWRPTGGET 363
               +K  WRP+  ET
Sbjct: 808 LLSVQKSIWRPSEVET 823

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1

 Score =  404 bits (1039), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/375 (50%), Positives = 254/375 (67%), Gaps = 21/375 (5%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MSLAPKDEHEAQ+QFALER IPAI +V+G+++L FP   +DLIHCARCRV W  +GG  L
Sbjct: 521 MSLAPKDEHEAQVQFALERKIPAISAVMGSKRLPFPSRVFDLIHCARCRVPWHNEGGMLL 580

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDS-NRIGFVI 119
           LELNR+LRPGG+F+WSATPVY+  +    +W  M  LT+S+CW+ V  + D  N IG  I
Sbjct: 581 LELNRMLRPGGYFVWSATPVYQKLEEDVQIWKEMSALTKSLCWELVTINKDKLNGIGAAI 640

Query: 120 YQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
           YQKP +  CY+ R+ N PPLC   ++ N++W+VPL  C+ ++PT+       WP  WP+R
Sbjct: 641 YQKPATNECYEKRKHNKPPLCKNNDDANAAWYVPLQACMHKVPTNVVERGSKWPVNWPRR 700

Query: 180 LSSKP------------PSLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDM 227
           L + P               P D    F  D  HW  +VS VY+  + I+WS+VRNVMDM
Sbjct: 701 LQTPPYWLNSSQMGIYGKPAPRD----FTTDYEHWKHVVSKVYMNEIGISWSNVRNVMDM 756

Query: 228 NASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLH 287
            A YGGFAAAL D  +WVMNVV I++PDTL II++RGL G+YHDWCESF+TYPR+YDLLH
Sbjct: 757 RAVYGGFAAALKDLQVWVMNVVNINSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLH 816

Query: 288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI---- 343
           +  L S +  RC++  V  E+DRI+RPGG ++V+D   +I +++ +L SL W  ++    
Sbjct: 817 ADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLIVRDESNVIREVENMLKSLHWDVHLTFSK 876

Query: 344 YHDQFLVGKKGFWRP 358
           + +  L  +KGFWRP
Sbjct: 877 HQEGILSAQKGFWRP 891

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LN50|PMTS_ARATH Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=1 SV=1

 Score =  340 bits (873), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 166/364 (45%), Positives = 232/364 (63%), Gaps = 14/364 (3%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           +SL  KD+     Q ALERG P  +S + +++L FP   +D IHCA C VHW + GGK L
Sbjct: 369 VSLGLKDDLVDLAQVALERGFPTFVSSLASRRLPFPSGVFDTIHCAACGVHWHSHGGKLL 428

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVA-RSVDSNRIGFVI 119
           LE+NRILRP G+FI S+      DD       AM  LT S+CW  +A ++ +++ +G  I
Sbjct: 429 LEMNRILRPNGYFILSSNNDKIEDDE------AMTALTASICWNILAHKTEEASEMGVRI 482

Query: 120 YQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
           YQKP S   Y+ R +  PPLC+   N +++W+VP+  CI  +P+  + +   WP  WP+R
Sbjct: 483 YQKPESNDIYELRRKKNPPLCEDNENPDAAWYVPMKTCIYEIPSAIEQHGAEWPEEWPKR 542

Query: 180 LSSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALI 239
           L + P  L   S+E   +DT HW A+V+  Y+ GL I+W  +RNVMDM A YGGF A+L+
Sbjct: 543 LETYPEWLT--SKEKAMEDTNHWNAMVNKSYLTGLGIDWLHIRNVMDMTAIYGGFGASLV 600

Query: 240 DQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRC 299
            Q +WVMNVVP+ +PDTL  I++RGL+G+YHDWCE F TYPR+YDLLH+  L S +  RC
Sbjct: 601 KQNVWVMNVVPVHSPDTLPFIYERGLLGIYHDWCEPFGTYPRSYDLLHADHLFSRLKNRC 660

Query: 300 DI-ADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQ----FLVGKKG 354
              A + VEMDR+ RPGG+V+V+D +E++  L+ +L SL W   + + Q     L  +K 
Sbjct: 661 KQPASIVVEMDRLTRPGGWVVVRDKVEILEPLEEILRSLHWEIRMTYAQDKEGMLCAQKT 720

Query: 355 FWRP 358
            WRP
Sbjct: 721 LWRP 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1

 Score =  324 bits (831), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 158/355 (44%), Positives = 241/355 (67%), Gaps = 23/355 (6%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS+APKD HE QIQFALERG+PA+++   T++L +P  A+DL+HC+RCR++W    G  L
Sbjct: 300 MSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILL 359

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFV-I 119
           LE+NR+LR GG+F+W+A PVY+H+      W  M+NLT  +CW  V +       G++ I
Sbjct: 360 LEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKE------GYIAI 413

Query: 120 YQKPVSYSCYKNREEN-TPPLCDGKNNLNSSWHVPLSNCISRLPTDSKG-NLHSWPAPWP 177
           +QKPV+ +CY +R    +PPLC+ +++ ++ W+V L  CI+R+  +  G NL    APWP
Sbjct: 414 WQKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGYGANL----APWP 469

Query: 178 QRLSSKPPSLPP---DS----EEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNAS 230
            RL + P  L     DS    +E F  ++ +W  ++S+ YV  L      +RNV+DM A 
Sbjct: 470 ARLLTPPDRLQTIQIDSYIARKELFVAESKYWKEIISN-YVNALHWKQIGLRNVLDMRAG 528

Query: 231 YGGFAAALIDQPL--WVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHS 288
           +GGFAAAL +  +  WV+NV+P+  P+TL +I+DRGL+G+ HDWCE F+TYPRTYDLLH+
Sbjct: 529 FGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHA 588

Query: 289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 343
           + L S   +RC++  + +EMDRILRPGG V ++DT+ + ++L+ + ++++W T++
Sbjct: 589 AGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSL 643

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1

 Score =  323 bits (827), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 158/351 (45%), Positives = 231/351 (65%), Gaps = 15/351 (4%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS+APKD HE QIQFALERG+PA+ +   T++L +P  A+DLIHC+RCR++W    G  L
Sbjct: 328 MSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILL 387

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFV-I 119
           LE+NR+LR GG+F W+A PVY+H+      W  M+NLT S+CWK V +       G+V I
Sbjct: 388 LEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVKKE------GYVAI 441

Query: 120 YQKPVSYSCYKNREENT-PPLCDGKNNLNSSWHVPLSNCISRLPTDS-KGNLHSWPAPW- 176
           +QKP +  CY +RE  T PPLCD  ++ ++ W+  L  CISR+P     GN+  WPA   
Sbjct: 442 WQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIPEKGYGGNVPLWPARLH 501

Query: 177 --PQRLSSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGF 234
             P RL +         +E F  ++ +W  ++   YV  L      +RNV+DM A +GGF
Sbjct: 502 TPPDRLQTIKFDSYIARKELFKAESKYWNEIIGG-YVRALKWKKMKLRNVLDMRAGFGGF 560

Query: 235 AAALIDQPL--WVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLL 292
           AAAL D  L  WV++VVP+  P+TL +I+DRGL+G+ HDWCE F+TYPRTYD LH+S L 
Sbjct: 561 AAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHASGLF 620

Query: 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 343
           S   +RC+++ + +EMDRILRPGG   ++D+++++++++ +  ++ W T++
Sbjct: 621 SIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGWHTSL 671

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1

 Score =  320 bits (820), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 152/352 (43%), Positives = 237/352 (67%), Gaps = 15/352 (4%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           +S+APKD HE QIQFALERG+PA+++V  T++L +P  ++++IHC+RCR++W    G  L
Sbjct: 292 LSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILL 351

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFV-I 119
           LE+NR+LR GG+F+W+A PVY+H+D  +  W  M++LT  +CW+ + +       G++ +
Sbjct: 352 LEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIKKE------GYIAV 405

Query: 120 YQKPVSYSCYKNREENT-PPLCDGKNNLNSSWHVPLSNCISRLPTDSKG-NLHSWPAPW- 176
           ++KP++ SCY +RE  T PPLC   ++ +  W+V +  CI+RLP +  G N+ +WPA   
Sbjct: 406 WRKPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGYGANVSTWPARLH 465

Query: 177 --PQRLSSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGF 234
             P+RL S         +E    ++  W  +V + YV         +RNV+DM A +GGF
Sbjct: 466 DPPERLQSIQMDAYISRKEIMKAESRFWLEVV-ESYVRVFRWKEFKLRNVLDMRAGFGGF 524

Query: 235 AAALIDQPL--WVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLL 292
           AAAL D  L  WVMN+VP+   +TL +I+DRGL G  HDWCE F+TYPRTYDL+H++FL 
Sbjct: 525 AAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLF 584

Query: 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY 344
           S   +RC+I ++ +EMDR+LRPGG+V ++D+L ++++L+ V  ++ W+  ++
Sbjct: 585 SVEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGWTAGVH 636

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
225448534	606	PREDICTED: probable methyltransferase PM	0.988	0.592	0.767	1e-167
224109268	514	predicted protein [Populus trichocarpa]	0.986	0.696	0.752	1e-162
356501216	595	PREDICTED: probable methyltransferase PM	0.988	0.603	0.734	1e-160
449460888	590	PREDICTED: probable methyltransferase PM	0.986	0.606	0.725	1e-160
356553765	595	PREDICTED: probable methyltransferase PM	0.991	0.605	0.718	1e-157
255559511	603	ATP binding protein, putative [Ricinus c	0.988	0.595	0.711	1e-156
357492789	617	hypothetical protein MTR_5g083150 [Medic	0.991	0.583	0.707	1e-155
356538003	594	PREDICTED: probable methyltransferase PM	0.986	0.602	0.706	1e-152
297827657	593	dehydration-responsive family protein [A	0.986	0.603	0.689	1e-150
18405331	589	putative methyltransferase PMT23 [Arabid	0.986	0.607	0.690	1e-149

>gi|225448534|ref|XP_002273466.1| PREDICTED: probable methyltransferase PMT23 [Vitis vinifera] gi|297736564|emb|CBI25435.3| unnamed protein product [Vitis vinifera]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 277/361 (76%), Positives = 314/361 (86%), Gaps = 2/361 (0%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA L+VIGTQKLT+PD+ YDLIHCARCRVHWDA GG+PL
Sbjct: 246 MSFAPKDEHEAQIQFALERGIPATLAVIGTQKLTYPDNVYDLIHCARCRVHWDANGGRPL 305

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
           +ELNRILRPGG+F+WSATPVYR D+R +SVWNAMVN+T+S+CWK VA++VD N IG VIY
Sbjct: 306 MELNRILRPGGYFVWSATPVYRKDERDQSVWNAMVNVTKSICWKVVAKTVDLNGIGLVIY 365

Query: 121 QKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL 180
           QKPVS SCY+ R+EN PP+CD K+  N SW+VPL  CI +LP DS GN  +WP  WPQRL
Sbjct: 366 QKPVSSSCYEKRKENNPPMCDIKDKKNISWYVPLDGCIPQLPADSMGNSQNWPVSWPQRL 425

Query: 181 SSKPPSLP--PDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAAL 238
           SSKP SLP  PD+E+ F +DT HW ALVSDVY+ GLA+NWSS+RNVMDMNA YGGFAAAL
Sbjct: 426 SSKPLSLPTEPDAEQMFYEDTKHWSALVSDVYLEGLAVNWSSIRNVMDMNAGYGGFAAAL 485

Query: 239 IDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 298
           IDQP+WVMNVVPI  PDTLS+IFDRGLIG YHDWCES NTYPRTYDLLHSSFLL ++TQR
Sbjct: 486 IDQPVWVMNVVPIHVPDTLSVIFDRGLIGTYHDWCESSNTYPRTYDLLHSSFLLGNLTQR 545

Query: 299 CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 358
           CDI DVAVEMDRILRPGG++LVQDT+E+I+KL PVLHSL WST +Y  QFLVGKK FWRP
Sbjct: 546 CDIIDVAVEMDRILRPGGWLLVQDTIEIIDKLSPVLHSLHWSTTLYQGQFLVGKKDFWRP 605

Query: 359 T 359
           T
Sbjct: 606 T 606

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109268|ref|XP_002315142.1| predicted protein [Populus trichocarpa] gi|222864182|gb|EEF01313.1| predicted protein [Populus trichocarpa]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/360 (75%), Positives = 307/360 (85%), Gaps = 2/360 (0%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA LSVIGTQKLTFPD+A+DLIHCARCRVHWDA GGKPL
Sbjct: 154 MSFAPKDEHEAQIQFALERGIPATLSVIGTQKLTFPDNAFDLIHCARCRVHWDADGGKPL 213

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
           +ELNRILRPGGFF+WSATPVYR DDR R+VWN+MV LT+S+CWK VA++VDS+ IG VIY
Sbjct: 214 MELNRILRPGGFFVWSATPVYRDDDRDRNVWNSMVALTKSICWKVVAKTVDSSGIGLVIY 273

Query: 121 QKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL 180
           QKPVS SCY+ R+E+ PPLC+ ++  N+ W+VPLS C+ RLP DS GNL  WP  WP R+
Sbjct: 274 QKPVSSSCYEKRQESNPPLCEQQDEKNAPWYVPLSGCLPRLPVDSMGNLVGWPTQWPDRI 333

Query: 181 SSKPPSLP--PDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAAL 238
           SSKPPSL    D+EE F +DT HW +LVSDVY+ G AINWSSVRN+MDMNA YGGFAAAL
Sbjct: 334 SSKPPSLTTLSDAEEMFIEDTKHWASLVSDVYLDGPAINWSSVRNIMDMNAGYGGFAAAL 393

Query: 239 IDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 298
           ID P WVMNVVP    DTL IIFDRGLIG+YHDWCES NTYPRTYDLLH+SFL  ++TQR
Sbjct: 394 IDLPYWVMNVVPTHTEDTLPIIFDRGLIGIYHDWCESLNTYPRTYDLLHASFLFRNLTQR 453

Query: 299 CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 358
           CDI DVAVEMDRILRPGGY+LVQDT+EM+NKL  VL S+QWST++Y  QFLVG KGFWRP
Sbjct: 454 CDIIDVAVEMDRILRPGGYILVQDTMEMVNKLNSVLRSMQWSTSLYQGQFLVGNKGFWRP 513

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501216|ref|XP_003519422.1| PREDICTED: probable methyltransferase PMT23-like [Glycine max]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 265/361 (73%), Positives = 303/361 (83%), Gaps = 2/361 (0%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA LSVIGTQKLTFPD+ +DLIHCARCRVHWDA GGKPL
Sbjct: 233 MSFAPKDEHEAQIQFALERGIPATLSVIGTQKLTFPDNGFDLIHCARCRVHWDADGGKPL 292

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
            ELNRILRPGGFF WSATPVYR D+R + VWNAMV++T++MCWK VA+  DS+ IG VIY
Sbjct: 293 YELNRILRPGGFFAWSATPVYRDDERDQKVWNAMVDITKAMCWKVVAKGHDSSGIGLVIY 352

Query: 121 QKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL 180
           QKP S SCY+ REEN PPLC+ K+  N SW+  L +C++ LP D KGNL SWP PWPQRL
Sbjct: 353 QKPTSSSCYEKREENNPPLCENKDGKNISWYARLDSCLTPLPVDGKGNLQSWPKPWPQRL 412

Query: 181 SSKPPSLPPDSE--EAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAAL 238
           +SKPPSLP DS+  + F KD+  W  LVSDVY+ GL+I WSSVRNVMDMNA Y GFAAAL
Sbjct: 413 TSKPPSLPTDSDAKDKFFKDSKRWSELVSDVYMNGLSIKWSSVRNVMDMNAGYAGFAAAL 472

Query: 239 IDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 298
           ID P+WVMNVVPID PDTLSII DRGLIGMYHDWCESFNTYPRTYDLLH+SFL   + QR
Sbjct: 473 IDLPVWVMNVVPIDVPDTLSIIMDRGLIGMYHDWCESFNTYPRTYDLLHASFLFKYLEQR 532

Query: 299 CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 358
           CDI DVAVE+DRILRP GY++VQD++E++NKL P+L SL WS  ++ +QFLVG+KGFWRP
Sbjct: 533 CDIVDVAVEIDRILRPNGYLVVQDSVEILNKLNPILRSLNWSVTLHQNQFLVGRKGFWRP 592

Query: 359 T 359
           T
Sbjct: 593 T 593

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460888|ref|XP_004148176.1| PREDICTED: probable methyltransferase PMT23-like [Cucumis sativus] gi|449507782|ref|XP_004163128.1| PREDICTED: probable methyltransferase PMT23-like [Cucumis sativus]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 261/360 (72%), Positives = 302/360 (83%), Gaps = 2/360 (0%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA LSVIGTQ+LTFPD+AYDLIHCARCRVHWDA GGKPL
Sbjct: 231 MSFAPKDEHEAQIQFALERGIPATLSVIGTQRLTFPDNAYDLIHCARCRVHWDADGGKPL 290

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
           LELNRILRPGG+FIWSATPVYR D+R ++VWNAMV LT+SMCWK V ++ DS+ +G VIY
Sbjct: 291 LELNRILRPGGYFIWSATPVYRDDERDKNVWNAMVLLTKSMCWKVVKKTSDSSGVGLVIY 350

Query: 121 QKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL 180
           QKP S SCY+ R EN PP+CD KN  N+SW+ PL+ CIS+LP D+KG   +WP+PWPQRL
Sbjct: 351 QKPTSTSCYEERSENDPPICDEKNKRNNSWYAPLTRCISQLPVDNKGQYFNWPSPWPQRL 410

Query: 181 SSKPP--SLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAAL 238
           +SKPP  S+ P +EE F +DT  W  +VSDVY+  + +NWS+VRNV+DMNA YGGFAAAL
Sbjct: 411 TSKPPRLSVEPSAEEKFLEDTKQWSTVVSDVYLDKIGVNWSTVRNVLDMNAGYGGFAAAL 470

Query: 239 IDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 298
           ID PLWVMNVVPID PDTLSIIFDRGLIG+YHDWCESFNTYPRTYDLLHSSFL + + +R
Sbjct: 471 IDLPLWVMNVVPIDEPDTLSIIFDRGLIGLYHDWCESFNTYPRTYDLLHSSFLFTSLKKR 530

Query: 299 CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 358
           CD+    VEMDRILRPGGYVL++D +E I  L  + HSLQWS ++Y DQ LVGKKGFWRP
Sbjct: 531 CDVVATVVEMDRILRPGGYVLIRDNMEAIKVLGSIFHSLQWSVSVYQDQLLVGKKGFWRP 590

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553765|ref|XP_003545223.1| PREDICTED: probable methyltransferase PMT23-like [Glycine max]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 260/362 (71%), Positives = 297/362 (82%), Gaps = 2/362 (0%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA LSVIGTQKLTFPD+ +DLIHCARCRVHWDA GGKPL
Sbjct: 233 MSFAPKDEHEAQIQFALERGIPATLSVIGTQKLTFPDNGFDLIHCARCRVHWDADGGKPL 292

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
            ELNRILRPGGFF WSATPVYR D+R + VWNAMV++T++MCWK VA+  DS+ IG VIY
Sbjct: 293 YELNRILRPGGFFAWSATPVYRDDERDQKVWNAMVDITKAMCWKVVAKGHDSSGIGLVIY 352

Query: 121 QKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL 180
           QKP S SCY+ RE N PPLC+ K+  NSSW+  L +C++ LP D  GNL SWP PWPQRL
Sbjct: 353 QKPTSSSCYEKREGNNPPLCENKDGKNSSWYARLDSCLTPLPVDGMGNLQSWPKPWPQRL 412

Query: 181 SSKPPSLPPDSE--EAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAAL 238
           +SKPPSLP DS+  + F KD+  W  LVSD Y+ GL+I WSSVRNVMDMNA Y GFA AL
Sbjct: 413 TSKPPSLPTDSDAKDKFFKDSKRWSELVSDFYMNGLSIKWSSVRNVMDMNAGYAGFATAL 472

Query: 239 IDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 298
           ID P+WVMNVVPID PDTLSII DRG IGMYHDWCESFNTYPRTYDLLHSSFL   + QR
Sbjct: 473 IDLPVWVMNVVPIDVPDTLSIIMDRGFIGMYHDWCESFNTYPRTYDLLHSSFLFKYLEQR 532

Query: 299 CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 358
           CDI DVAVE+DRILRP GY++VQD++E++NKL  +L SL WS  ++ +QFLVG+KG WRP
Sbjct: 533 CDIVDVAVEIDRILRPNGYLVVQDSMEILNKLISILRSLHWSVTLHQNQFLVGRKGLWRP 592

Query: 359 TG 360
            G
Sbjct: 593 KG 594

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559511|ref|XP_002520775.1| ATP binding protein, putative [Ricinus communis] gi|223539906|gb|EEF41484.1| ATP binding protein, putative [Ricinus communis]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 257/361 (71%), Positives = 303/361 (83%), Gaps = 2/361 (0%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA LSVIGTQKLT+PD+A+D+IHCARCRVHWDA GGKPL
Sbjct: 243 MSFAPKDEHEAQIQFALERGIPATLSVIGTQKLTYPDNAFDMIHCARCRVHWDADGGKPL 302

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
           +ELNRILRPGGFF+WSATPVYR D+R  +VWNAMV LT SMCWK V +++DS+ IG VIY
Sbjct: 303 IELNRILRPGGFFVWSATPVYRDDERDHNVWNAMVALTNSMCWKNVTKTMDSSGIGLVIY 362

Query: 121 QKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL 180
           QKPV  SCY+ R+EN PPLCD K+  N SW+VP++ C+SRLP DS+GN  SWPA WP RL
Sbjct: 363 QKPVLPSCYEKRQENDPPLCDQKDTQNVSWYVPINRCLSRLPMDSQGNAMSWPAGWPYRL 422

Query: 181 SSKPPSL--PPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAAL 238
           ++ PPSL    D+ E F +DT HW  LVSDVY+   AINW+SVRN+MDMNA YGGFAAAL
Sbjct: 423 NTVPPSLLTGSDAVEIFYEDTRHWSVLVSDVYLNAPAINWTSVRNIMDMNAGYGGFAAAL 482

Query: 239 IDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 298
           +D P WVMNVVP D+ DTL +I DRGLIG+YHDWCESFNTYPRTYDLLHSSFL  ++TQR
Sbjct: 483 VDLPYWVMNVVPFDSQDTLPVILDRGLIGIYHDWCESFNTYPRTYDLLHSSFLFKNLTQR 542

Query: 299 CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 358
           CDI +V  E+DRI+RPGGYV++QDT+EMI KL  +L SL+WST++Y  QFL+G+KGFWRP
Sbjct: 543 CDIIEVVAEIDRIVRPGGYVVIQDTMEMIQKLSSMLSSLRWSTSLYQGQFLIGRKGFWRP 602

Query: 359 T 359
           +
Sbjct: 603 S 603

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492789|ref|XP_003616683.1| hypothetical protein MTR_5g083150 [Medicago truncatula] gi|355518018|gb|AES99641.1| hypothetical protein MTR_5g083150 [Medicago truncatula]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 256/362 (70%), Positives = 297/362 (82%), Gaps = 2/362 (0%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA LSVIGTQKLTFPD+ +DLIHCARCRVHWDA GGKPL
Sbjct: 253 MSFAPKDEHEAQIQFALERGIPATLSVIGTQKLTFPDNGFDLIHCARCRVHWDADGGKPL 312

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
            ELNRILRPGG+F WSATPVYR DDR + VW AMV +T++MCWK VA++ DS+ IG VIY
Sbjct: 313 YELNRILRPGGYFAWSATPVYRDDDRDQKVWKAMVAITKAMCWKVVAKADDSSGIGLVIY 372

Query: 121 QKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL 180
           QKP S SCY+ R EN PPLC+  +  NSSW+  L++C++ LP D KG   SWP PWPQRL
Sbjct: 373 QKPTSSSCYEKRTENNPPLCENADGKNSSWYARLNSCLTPLPVDGKGKPQSWPMPWPQRL 432

Query: 181 SSKPPSLPPDSE--EAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAAL 238
           +SKPPSLP DS+  + FNKD+  W  LVS+VY  GL+INWSSVRNVMDMNA Y GFAA+L
Sbjct: 433 TSKPPSLPNDSDATDEFNKDSNRWSQLVSNVYADGLSINWSSVRNVMDMNAGYAGFAASL 492

Query: 239 IDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 298
           ID+P+WVMNVVPID PDTLSII DRGLIGMYHDWCESFNTYPRTYDLLH+SFL   + QR
Sbjct: 493 IDRPIWVMNVVPIDVPDTLSIILDRGLIGMYHDWCESFNTYPRTYDLLHASFLFKYLEQR 552

Query: 299 CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 358
           C + DV VE+DRILRP GY+++ D++EM+NKL P L SL WS  ++ +QFLVG+K FWRP
Sbjct: 553 CGLVDVIVEIDRILRPDGYLVIHDSMEMLNKLSPTLRSLHWSVKLHQNQFLVGRKSFWRP 612

Query: 359 TG 360
           T 
Sbjct: 613 TS 614

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538003|ref|XP_003537495.1| PREDICTED: probable methyltransferase PMT23-like [Glycine max]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/361 (70%), Positives = 296/361 (81%), Gaps = 3/361 (0%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA LSVIGTQKLTF D+ +DLIHCARCRVHWDA GGKPL
Sbjct: 232 MSFAPKDEHEAQIQFALERGIPATLSVIGTQKLTFADNGFDLIHCARCRVHWDADGGKPL 291

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
            ELNRILRPGGFF WSATPVYR D+R + VWNAMV +T++MCW  VA+++DS+ IG VIY
Sbjct: 292 FELNRILRPGGFFAWSATPVYRDDERDQKVWNAMVTVTKAMCWTVVAKTLDSSGIGLVIY 351

Query: 121 QKPVSYSCYKNREENTPPLCDGKNNLN-SSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
           QKP S  CY+ R+E TPPLC+  +  + SSW+  LS+C+  LP D++GNL SWP PWP+R
Sbjct: 352 QKPTSTFCYQERKERTPPLCETSDRKSISSWYTKLSSCLIPLPVDAEGNLQSWPMPWPER 411

Query: 180 LSSKPPSL--PPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAA 237
           L+S PPSL    D+ E F KDT HW  LVSDVY  GL++NWSSVRN+MDMNA Y GFAAA
Sbjct: 412 LTSIPPSLSIESDASEMFLKDTKHWSELVSDVYRDGLSMNWSSVRNIMDMNAGYAGFAAA 471

Query: 238 LIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 297
           LID P+WVMNVVPID PDTL+ IFDRGLIGMYHDWCES NTYPRTYDL+H+SFL   + Q
Sbjct: 472 LIDLPVWVMNVVPIDMPDTLTTIFDRGLIGMYHDWCESLNTYPRTYDLVHASFLFKHLMQ 531

Query: 298 RCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWR 357
           RCDI  VAVE+DRI+RP GY+LVQD++E+INKL PVL SL WS  +Y +QFLVG+K FWR
Sbjct: 532 RCDIVVVAVEIDRIMRPDGYLLVQDSMEIINKLGPVLRSLHWSVTLYQNQFLVGRKSFWR 591

Query: 358 P 358
           P
Sbjct: 592 P 592

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827657|ref|XP_002881711.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297327550|gb|EFH57970.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 251/364 (68%), Positives = 296/364 (81%), Gaps = 6/364 (1%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA LSVIGTQ+LTFP +A+DLIHCARCRVHWDA GGKPL
Sbjct: 233 MSFAPKDEHEAQIQFALERGIPATLSVIGTQQLTFPSNAFDLIHCARCRVHWDADGGKPL 292

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
           LELNR+LRPGGFFIWSATPVYR +DR   +WNAMV+LT+S+CWK V ++VDS+ IG VIY
Sbjct: 293 LELNRVLRPGGFFIWSATPVYRDNDRDSRIWNAMVSLTKSICWKVVTKTVDSSGIGLVIY 352

Query: 121 QKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL 180
           QKP+S SCY  R    PPLCD K   N+SW+VPL+ CIS+LP+   GN+ SWP  WP+RL
Sbjct: 353 QKPISESCYNKRSTQDPPLCD-KKEANASWYVPLAKCISKLPS---GNVQSWPELWPKRL 408

Query: 181 SSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALID 240
            S  P       E   KDT  W A+VSDVY+  LA+NWS+VRNVMDMNA +GGFAAALI+
Sbjct: 409 VSVKPQSISVEAETLKKDTEKWSAIVSDVYLEHLAVNWSTVRNVMDMNAGFGGFAAALIN 468

Query: 241 QPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLL--SDVTQR 298
           +PLWVMNVVP++ PDTLS+++DRGLIG+YHDWCES NTYPRTYDLLHSSFLL  +D+TQR
Sbjct: 469 RPLWVMNVVPVNKPDTLSVVYDRGLIGIYHDWCESLNTYPRTYDLLHSSFLLGDTDLTQR 528

Query: 299 CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 358
           C+I  V  E+DRI+RPGGY++VQDT+E I KL+ +L SL WST IY D+F VG+KGFWRP
Sbjct: 529 CEIVQVVAEIDRIVRPGGYLVVQDTMETIKKLEYILGSLHWSTKIYQDRFFVGRKGFWRP 588

Query: 359 TGGE 362
              E
Sbjct: 589 AKPE 592

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405331|ref|NP_565926.1| putative methyltransferase PMT23 [Arabidopsis thaliana] gi|75265917|sp|Q9SIZ3.2|PMTN_ARATH RecName: Full=Probable methyltransferase PMT23 gi|4588002|gb|AAD25943.1|AF085279_16 hypothetical ankyrin-like protein [Arabidopsis thaliana] gi|16649003|gb|AAL24353.1| Unknown protein [Arabidopsis thaliana] gi|20198017|gb|AAD25663.2| expressed protein [Arabidopsis thaliana] gi|20259948|gb|AAM13321.1| unknown protein [Arabidopsis thaliana] gi|330254712|gb|AEC09806.1| putative methyltransferase PMT23 [Arabidopsis thaliana]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/362 (69%), Positives = 290/362 (80%), Gaps = 4/362 (1%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKDEHEAQIQFALERGIPA LSVIGTQ+LTFP +A+DLIHCARCRVHWDA GGKPL
Sbjct: 230 MSFAPKDEHEAQIQFALERGIPATLSVIGTQQLTFPSNAFDLIHCARCRVHWDADGGKPL 289

Query: 61  LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
           LELNR+LRPGGFFIWSATPVYR +DR   +WN MV+LT+S+CWK V ++VDS+ IG VIY
Sbjct: 290 LELNRVLRPGGFFIWSATPVYRDNDRDSRIWNEMVSLTKSICWKVVTKTVDSSGIGLVIY 349

Query: 121 QKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL 180
           QKP S SCY  R    PPLCD K   N SW+VPL+ C+S+LP+   GN+ SWP  WP+RL
Sbjct: 350 QKPTSESCYNKRSTQDPPLCD-KKEANGSWYVPLAKCLSKLPS---GNVQSWPELWPKRL 405

Query: 181 SSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALID 240
            S  P       E   KDT  W A VSDVY+  LA+NWS+VRNVMDMNA +GGFAAALI+
Sbjct: 406 VSVKPQSISVKAETLKKDTEKWSASVSDVYLKHLAVNWSTVRNVMDMNAGFGGFAAALIN 465

Query: 241 QPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCD 300
            PLWVMNVVP+D PDTLS+++DRGLIG+YHDWCES NTYPRTYDLLHSSFLL D+TQRC+
Sbjct: 466 LPLWVMNVVPVDKPDTLSVVYDRGLIGVYHDWCESVNTYPRTYDLLHSSFLLGDLTQRCE 525

Query: 301 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRPTG 360
           I  V  E+DRI+RPGGY++VQD +E I KL+ +L SL WST IY D+FLVG+KGFWRP  
Sbjct: 526 IVQVVAEIDRIVRPGGYLVVQDNMETIMKLESILGSLHWSTKIYEDRFLVGRKGFWRPAK 585

Query: 361 GE 362
            E
Sbjct: 586 PE 587

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2063078	589	AT2G40280 [Arabidopsis thalian	0.986	0.607	0.682	3e-140
TAIR|locus:2013628	770	AT1G29470 [Arabidopsis thalian	1.0	0.471	0.517	1.2e-106
TAIR|locus:2040864	770	AT2G34300 [Arabidopsis thalian	1.0	0.471	0.512	1.1e-105
TAIR|locus:2160806	829	AT5G64030 [Arabidopsis thalian	1.0	0.437	0.505	4.1e-104
TAIR|locus:2080823	895	AT3G51070 [Arabidopsis thalian	0.986	0.4	0.504	2.3e-101
TAIR|locus:2016392	724	AT1G19430 [Arabidopsis thalian	0.964	0.483	0.447	3.8e-85
TAIR|locus:2063947	694	AT2G39750 [Arabidopsis thalian	0.925	0.484	0.447	2.7e-84
TAIR|locus:2153704	682	AT5G06050 [Arabidopsis thalian	0.920	0.489	0.436	1.2e-83
TAIR|locus:2195955	655	AT1G77260 [Arabidopsis thalian	0.925	0.512	0.429	6.4e-83
TAIR|locus:2129660	608	AT4G14360 [Arabidopsis thalian	0.917	0.547	0.452	1.6e-77

TAIR|locus:2063078 AT2G40280 [Arabidopsis thaliana (taxid:3702)]

 Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
 Identities = 247/362 (68%), Positives = 287/362 (79%)

Query:     1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
             MS APKDEHEAQIQFALERGIPA LSVIGTQ+LTFP +A+DLIHCARCRVHWDA GGKPL
Sbjct:   230 MSFAPKDEHEAQIQFALERGIPATLSVIGTQQLTFPSNAFDLIHCARCRVHWDADGGKPL 289

Query:    61 LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
             LELNR+LRPGGFFIWSATPVYR +DR   +WN MV+LT+S+CWK V ++VDS+ IG VIY
Sbjct:   290 LELNRVLRPGGFFIWSATPVYRDNDRDSRIWNEMVSLTKSICWKVVTKTVDSSGIGLVIY 349

Query:   121 QKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRX 180
             QKP S SCY  R    PPLCD K   N SW+VPL+ C+S+LP+   GN+ SWP  WP+R 
Sbjct:   350 QKPTSESCYNKRSTQDPPLCD-KKEANGSWYVPLAKCLSKLPS---GNVQSWPELWPKRL 405

Query:   181 XXXXXXXXXXXEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALID 240
                         E   KDT  W A VSDVY+  LA+NWS+VRNVMDMNA +GGFAAALI+
Sbjct:   406 VSVKPQSISVKAETLKKDTEKWSASVSDVYLKHLAVNWSTVRNVMDMNAGFGGFAAALIN 465

Query:   241 QPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCD 300
              PLWVMNVVP+D PDTLS+++DRGLIG+YHDWCES NTYPRTYDLLHSSFLL D+TQRC+
Sbjct:   466 LPLWVMNVVPVDKPDTLSVVYDRGLIGVYHDWCESVNTYPRTYDLLHSSFLLGDLTQRCE 525

Query:   301 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRPTG 360
             I  V  E+DRI+RPGGY++VQD +E I KL+ +L SL WST IY D+FLVG+KGFWRP  
Sbjct:   526 IVQVVAEIDRIVRPGGYLVVQDNMETIMKLESILGSLHWSTKIYEDRFLVGRKGFWRPAK 585

Query:   361 GE 362
              E
Sbjct:   586 PE 587

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2013628 AT1G29470 [Arabidopsis thaliana (taxid:3702)]

 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 194/375 (51%), Positives = 252/375 (67%)

Query:     1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
             +S APKDEHEAQ+QFALERGIPA+ +V+GT++L FP   +DLIHCARCRV W  +GGK L
Sbjct:   390 LSFAPKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKLL 449

Query:    61 LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDS-NRIGFVI 119
             LELNR LRPGGFF+WSATPVYR  +    +W AM  LT++MCW+ +    D  N +G  I
Sbjct:   450 LELNRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTKAMCWELMTIKKDELNEVGAAI 509

Query:   120 YQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
             YQKP+S  CY  R +N PPLC   ++ N++W+VPL  CI ++  DS      WP  WP+R
Sbjct:   510 YQKPMSNKCYNERSQNEPPLCKDSDDQNAAWNVPLEACIHKVTEDSSKRGAVWPESWPER 569

Query:   180 XXXXXXXXXXX-------XEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYG 232
                                +E F  D   W  +VS  Y+ G+ I+WS VRNVMDM A YG
Sbjct:   570 VETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSYLNGMGIDWSYVRNVMDMRAVYG 629

Query:   233 GFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLL 292
             GFAAAL D  LWVMNVVPID+PDTL II++RGL G+YHDWCESF+TYPRTYDLLH+  L 
Sbjct:   630 GFAAALKDLKLWVMNVVPIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLF 689

Query:   293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQ----F 348
             S + +RC++  V  E+DRILRP G  +V+D +E I +++ ++ S++W+  + H +     
Sbjct:   690 SSLKKRCNLVGVMAEVDRILRPQGTFIVRDDMETIGEIEKMVKSMKWNVRMTHSKDGEGL 749

Query:   349 LVGKKGFWRPTGGET 363
             L  +K +WRPT  ET
Sbjct:   750 LSVQKSWWRPTEAET 764

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2040864 AT2G34300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
 Identities = 192/375 (51%), Positives = 249/375 (66%)

Query:     1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
             +S APKDEHEAQ+QFALERGIPA+L+V+GT++L FP   +DLIHCARCRV W  +GGK L
Sbjct:   390 LSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKLL 449

Query:    61 LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDS-NRIGFVI 119
             LELNR LRPGGFF+WSATPVYR ++    +W AM  LT++MCWK V    D  N +G  I
Sbjct:   450 LELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELTKAMCWKLVTIKKDKLNEVGAAI 509

Query:   120 YQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
             YQKP S  CY  R +N PPLC   ++ N++W+VPL  C+ ++  DS      WP  WP+R
Sbjct:   510 YQKPTSNKCYNKRPQNEPPLCKDSDDQNAAWNVPLEACMHKVTEDSSKRGAVWPNMWPER 569

Query:   180 XXXXXXXXXXX-------XEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYG 232
                                 E F  D   W  +VS  Y+  + I+WS+VRNVMDM A YG
Sbjct:   570 VETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKAYLNDMGIDWSNVRNVMDMRAVYG 629

Query:   233 GFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLL 292
             GFAAAL D  LWVMNVVP+DAPDTL II++RGL G+YHDWCESFNTYPRTYDLLH+  L 
Sbjct:   630 GFAAALKDLKLWVMNVVPVDAPDTLPIIYERGLFGIYHDWCESFNTYPRTYDLLHADHLF 689

Query:   293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVG- 351
             S + +RC++  V  E+DRILRP G  +++D +E + +++ ++ S++W   +   +   G 
Sbjct:   690 STLRKRCNLVSVMAEIDRILRPQGTFIIRDDMETLGEVEKMVKSMKWKVKMTQSKDNEGL 749

Query:   352 ---KKGFWRPTGGET 363
                +K +WRP   ET
Sbjct:   750 LSIEKSWWRPEETET 764

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2160806 AT5G64030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 190/376 (50%), Positives = 249/376 (66%)

Query:     1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
             MSLAPKDEHEAQ+QFALERGIPAI +V+GT +L FP   +D++HCARCRV W  +GGK L
Sbjct:   448 MSLAPKDEHEAQVQFALERGIPAISAVMGTTRLPFPGRVFDIVHCARCRVPWHIEGGKLL 507

Query:    61 LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDS-NRIGFVI 119
             LELNR+LRPGGFF+WSATPVY+       +W AM  L + MCW+ V+ + D+ N +G   
Sbjct:   508 LELNRVLRPGGFFVWSATPVYQKKTEDVEIWKAMSELIKKMCWELVSINKDTINGVGVAT 567

Query:   120 YQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
             Y+KP S  CYKNR E  PP+C   ++ N+SW VPL  C+   P D       WP  WP R
Sbjct:   568 YRKPTSNECYKNRSEPVPPICADSDDPNASWKVPLQACMHTAPEDKTQRGSQWPEQWPAR 627

Query:   180 --------XXXXXXXXXXXXEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASY 231
                                  E F+ D  HW  +V+  Y+ GL INW+SVRNVMDM A Y
Sbjct:   628 LEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKSYLNGLGINWASVRNVMDMRAVY 687

Query:   232 GGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFL 291
             GGFAAAL D  +WVMNVVPID+PDTL+II++RGL G+YHDWCESF+TYPR+YDLLH+  L
Sbjct:   688 GGFAAALRDLKVWVMNVVPIDSPDTLAIIYERGLFGIYHDWCESFSTYPRSYDLLHADHL 747

Query:   292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQFLVG 351
              S + QRC++  V  E+DR+LRP G ++V+D  E I +++ ++ +++W   + + +   G
Sbjct:   748 FSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDDAETIQQVEGMVKAMKWEVRMTYSKEKEG 807

Query:   352 ----KKGFWRPTGGET 363
                 +K  WRP+  ET
Sbjct:   808 LLSVQKSIWRPSEVET 823

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2080823 AT3G51070 [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 187/371 (50%), Positives = 251/371 (67%)

Query:     1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
             MSLAPKDEHEAQ+QFALER IPAI +V+G+++L FP   +DLIHCARCRV W  +GG  L
Sbjct:   521 MSLAPKDEHEAQVQFALERKIPAISAVMGSKRLPFPSRVFDLIHCARCRVPWHNEGGMLL 580

Query:    61 LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDS-NRIGFVI 119
             LELNR+LRPGG+F+WSATPVY+  +    +W  M  LT+S+CW+ V  + D  N IG  I
Sbjct:   581 LELNRMLRPGGYFVWSATPVYQKLEEDVQIWKEMSALTKSLCWELVTINKDKLNGIGAAI 640

Query:   120 YQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
             YQKP +  CY+ R+ N PPLC   ++ N++W+VPL  C+ ++PT+       WP  WP+R
Sbjct:   641 YQKPATNECYEKRKHNKPPLCKNNDDANAAWYVPLQACMHKVPTNVVERGSKWPVNWPRR 700

Query:   180 XXX-----XXXXXXXXXEEA---FNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASY 231
                              + A   F  D  HW  +VS VY+  + I+WS+VRNVMDM A Y
Sbjct:   701 LQTPPYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSKVYMNEIGISWSNVRNVMDMRAVY 760

Query:   232 GGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFL 291
             GGFAAAL D  +WVMNVV I++PDTL II++RGL G+YHDWCESF+TYPR+YDLLH+  L
Sbjct:   761 GGFAAALKDLQVWVMNVVNINSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHL 820

Query:   292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI----YHDQ 347
              S +  RC++  V  E+DRI+RPGG ++V+D   +I +++ +L SL W  ++    + + 
Sbjct:   821 FSKLRTRCNLVPVMAEVDRIVRPGGKLIVRDESNVIREVENMLKSLHWDVHLTFSKHQEG 880

Query:   348 FLVGKKGFWRP 358
              L  +KGFWRP
Sbjct:   881 ILSAQKGFWRP 891

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2016392 AT1G19430 [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 163/364 (44%), Positives = 228/364 (62%)

Query:     1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
             +SL  KD+     Q ALERG P  +S + +++L FP   +D IHCA C VHW + GGK L
Sbjct:   369 VSLGLKDDLVDLAQVALERGFPTFVSSLASRRLPFPSGVFDTIHCAACGVHWHSHGGKLL 428

Query:    61 LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVA-RSVDSNRIGFVI 119
             LE+NRILRP G+FI S+      DD       AM  LT S+CW  +A ++ +++ +G  I
Sbjct:   429 LEMNRILRPNGYFILSSNNDKIEDDE------AMTALTASICWNILAHKTEEASEMGVRI 482

Query:   120 YQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
             YQKP S   Y+ R +  PPLC+   N +++W+VP+  CI  +P+  + +   WP  WP+R
Sbjct:   483 YQKPESNDIYELRRKKNPPLCEDNENPDAAWYVPMKTCIYEIPSAIEQHGAEWPEEWPKR 542

Query:   180 XXXXXXXXXXXXEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALI 239
                         E+A  +DT HW A+V+  Y+ GL I+W  +RNVMDM A YGGF A+L+
Sbjct:   543 LETYPEWLTSK-EKAM-EDTNHWNAMVNKSYLTGLGIDWLHIRNVMDMTAIYGGFGASLV 600

Query:   240 DQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRC 299
              Q +WVMNVVP+ +PDTL  I++RGL+G+YHDWCE F TYPR+YDLLH+  L S +  RC
Sbjct:   601 KQNVWVMNVVPVHSPDTLPFIYERGLLGIYHDWCEPFGTYPRSYDLLHADHLFSRLKNRC 660

Query:   300 -DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHDQ----FLVGKKG 354
                A + VEMDR+ RPGG+V+V+D +E++  L+ +L SL W   + + Q     L  +K 
Sbjct:   661 KQPASIVVEMDRLTRPGGWVVVRDKVEILEPLEEILRSLHWEIRMTYAQDKEGMLCAQKT 720

Query:   355 FWRP 358
              WRP
Sbjct:   721 LWRP 724

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 157/351 (44%), Positives = 229/351 (65%)

Query:     1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
             MS+APKD HE QIQFALERG+PA+ +   T++L +P  A+DLIHC+RCR++W    G  L
Sbjct:   328 MSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILL 387

Query:    61 LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFV-I 119
             LE+NR+LR GG+F W+A PVY+H+      W  M+NLT S+CWK V +       G+V I
Sbjct:   388 LEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVKKE------GYVAI 441

Query:   120 YQKPVSYSCYKNREENT-PPLCDGKNNLNSSWHVPLSNCISRLPTDSKG-NLHSWPAPW- 176
             +QKP +  CY +RE  T PPLCD  ++ ++ W+  L  CISR+P    G N+  WPA   
Sbjct:   442 WQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIPEKGYGGNVPLWPARLH 501

Query:   177 --PQRXXXXXXXXXXXXEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGF 234
               P R            +E F  ++ +W  ++   YV  L      +RNV+DM A +GGF
Sbjct:   502 TPPDRLQTIKFDSYIARKELFKAESKYWNEIIGG-YVRALKWKKMKLRNVLDMRAGFGGF 560

Query:   235 AAALIDQPL--WVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLL 292
             AAAL D  L  WV++VVP+  P+TL +I+DRGL+G+ HDWCE F+TYPRTYD LH+S L 
Sbjct:   561 AAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHASGLF 620

Query:   293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 343
             S   +RC+++ + +EMDRILRPGG   ++D+++++++++ +  ++ W T++
Sbjct:   621 SIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGWHTSL 671

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 154/353 (43%), Positives = 238/353 (67%)

Query:     1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
             MS+APKD HE QIQFALERG+PA+++   T++L +P  A+DL+HC+RCR++W    G  L
Sbjct:   300 MSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILL 359

Query:    61 LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFV-I 119
             LE+NR+LR GG+F+W+A PVY+H+      W  M+NLT  +CW  V +       G++ I
Sbjct:   360 LEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKE------GYIAI 413

Query:   120 YQKPVSYSCYKNREEN-TPPLCDGKNNLNSSWHVPLSNCISRLPTDSKG-NLHSWPAPW- 176
             +QKPV+ +CY +R    +PPLC+ +++ ++ W+V L  CI+R+  +  G NL  WPA   
Sbjct:   414 WQKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGYGANLAPWPARLL 473

Query:   177 --PQRXXXXXXXXXXXXEEAFNKDTTHWYALVSDVYVGGLAINWSSV--RNVMDMNASYG 232
               P R            +E F  ++ +W  ++S+ YV   A++W  +  RNV+DM A +G
Sbjct:   474 TPPDRLQTIQIDSYIARKELFVAESKYWKEIISN-YVN--ALHWKQIGLRNVLDMRAGFG 530

Query:   233 GFAAALIDQPL--WVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSF 290
             GFAAAL +  +  WV+NV+P+  P+TL +I+DRGL+G+ HDWCE F+TYPRTYDLLH++ 
Sbjct:   531 GFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAAG 590

Query:   291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 343
             L S   +RC++  + +EMDRILRPGG V ++DT+ + ++L+ + ++++W T++
Sbjct:   591 LFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSL 643

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 153/356 (42%), Positives = 236/356 (66%)

Query:     1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
             +S+APKD HE QIQFALERG+PA+++V  T++L +P  ++++IHC+RCR++W    G  L
Sbjct:   292 LSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILL 351

Query:    61 LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFV-I 119
             LE+NR+LR GG+F+W+A PVY+H+D  +  W  M++LT  +CW+ + +       G++ +
Sbjct:   352 LEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIKKE------GYIAV 405

Query:   120 YQKPVSYSCYKNREENT-PPLCDGKNNLNSSWHVPLSNCISRLPTDSKG-NLHSWPAPW- 176
             ++KP++ SCY +RE  T PPLC   ++ +  W+V +  CI+RLP +  G N+ +WPA   
Sbjct:   406 WRKPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGYGANVSTWPARLH 465

Query:   177 --PQRXXXXXXXXXXXXEEAFNKDTTHWYALVSDVYVGGLAINWSS--VRNVMDMNASYG 232
               P+R            +E    ++  W  +V   YV      W    +RNV+DM A +G
Sbjct:   466 DPPERLQSIQMDAYISRKEIMKAESRFWLEVVES-YVR--VFRWKEFKLRNVLDMRAGFG 522

Query:   233 GFAAALIDQPL--WVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSF 290
             GFAAAL D  L  WVMN+VP+   +TL +I+DRGL G  HDWCE F+TYPRTYDL+H++F
Sbjct:   523 GFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAF 582

Query:   291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIYHD 346
             L S   +RC+I ++ +EMDR+LRPGG+V ++D+L ++++L+ V  ++ W+  + HD
Sbjct:   583 LFSVEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGWTAGV-HD 637

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 156/345 (45%), Positives = 214/345 (62%)

Query:     1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
             MSLAP D H+ QIQFALERGIPA L V+GT++L +P  +++L HC+RCR+ W  + G  L
Sbjct:   233 MSLAPNDVHQNQIQFALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILL 292

Query:    61 LELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIY 120
             LEL+R+LRPGG+F +S+   Y  D+    +W  M  L E MCWK  A+    N+   VI+
Sbjct:   293 LELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVERMCWKIAAKR---NQT--VIW 347

Query:   121 QKPVSYSCYKNREENT-PPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQR 179
             QKP++  CY  RE  T PPLC   N+ ++ W V +  CI+           S  APWP R
Sbjct:   348 QKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPAR 407

Query:   180 XXXX--XXXXXXXXEEAFNKDTTHWYALVSDVYVGGLA--INWSSVRNVMDMNASYGGFA 235
                              F KDT  W   V D Y   L+  I   +VRN+MDM AS G FA
Sbjct:   408 LTSPPPRLADFGYSTGMFEKDTELWRQRV-DTYWDLLSPRIESDTVRNIMDMKASMGSFA 466

Query:   236 AALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDV 295
             AAL ++ +WVMNVVP D P+TL +I+DRGL+G  H WCE+F+TYPRTYDLLH+  ++SD+
Sbjct:   467 AALKEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDIISDI 526

Query:   296 TQR-CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW 339
              ++ C   D+ +EMDRILRP G+++++D   +++ +K  L +L W
Sbjct:   527 KKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVVDFVKKYLKALHW 571

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SIZ3	PMTN_ARATH	2, ., 1, ., 1, ., -	0.6906	0.9862	0.6078	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029349001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (606 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	0.0
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	2e-04
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	8e-04

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score =  519 bits (1340), Expect = 0.0
 Identities = 176/352 (50%), Positives = 241/352 (68%), Gaps = 13/352 (3%)

Query: 1   MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPL 60
           MS APKD HEAQ+QFALERG+PA+L V+GT++L +P  ++D+ HC+RC + W A  G  L
Sbjct: 143 MSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSRSFDMAHCSRCLIPWHANDGILL 202

Query: 61  LELNRILRPGGFFIWSATPVY-RHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVI 119
           LE++R+LRPGG+F+ S  PVY R ++  +  W AM  L +S+CWK VA+  D       I
Sbjct: 203 LEVDRVLRPGGYFVLSGPPVYARDEEDLQEEWKAMEALAKSLCWKLVAKKGD-----IAI 257

Query: 120 YQKPVSYSCYKNRE-ENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQ 178
           +QKPV+ SCY  RE    PPLC   ++ +++W+VP+  CI+ LP  S      W   WP+
Sbjct: 258 WQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEVGGGWLEKWPE 317

Query: 179 RLSSKPPSL-----PPDSEEAFNKDTTHWYALVSDVY-VGGLAINWSSVRNVMDMNASYG 232
           RL++ PP L        S EAF  DT  W   VS    +  L I+   VRNVMDMNA +G
Sbjct: 318 RLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYKRLLKLLIDKGRVRNVMDMNAGFG 377

Query: 233 GFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLL 292
           GFAAALID P+WVMNVVP+D+PDTL +I+DRGLIG+YHDWCE F+TYPRTYDLLH+  L 
Sbjct: 378 GFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGIYHDWCEPFSTYPRTYDLLHADHLF 437

Query: 293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY 344
           S   +RC++ D+ +EMDRILRPGG V+++D +++++K+K +  +++W   I 
Sbjct: 438 SLYKKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDKVKKIAKAMRWEVRIT 489

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 7  DEHEAQIQFALERGIPAILSVIGT-QKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNR 65
          D     +  A +R       V+G  + L FPD+++D++  +   +H      + L E+ R
Sbjct: 26 DLSPEMLALARKR--APRKFVVGDAEDLPFPDESFDVVVSSLV-LHHLPDPERALREIAR 82

Query: 66 ILRPGGFFI 74
          +L+PGG  +
Sbjct: 83 VLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 29/119 (24%)

Query: 216 INWS-SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDA-------------PDTLSIIF 261
           I W   VR  +D+      F A L+ + +  M+  P D              P  L ++ 
Sbjct: 112 IAWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLG 171

Query: 262 DRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL 319
            R L             YP R++D+ H S  L        I  + +E+DR+LRPGGY +
Sbjct: 172 TRRL------------PYPSRSFDMAHCSRCLIPWHANDGI--LLLEVDRVLRPGGYFV 216

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
PLN02336	475	phosphoethanolamine N-methyltransferase	99.83
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.77
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.72
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.65
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.62
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.5
PRK05785	226	hypothetical protein; Provisional	99.49
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.44
PLN02244	340	tocopherol O-methyltransferase	99.43
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.43
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.42
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.42
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.4
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.4
PRK11207	197	tellurite resistance protein TehB; Provisional	99.38
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.36
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.35
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.35
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.32
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.31
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.29
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.29
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.28
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.28
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.28
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.28
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.27
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.26
PLN02490	340	MPBQ/MSBQ methyltransferase	99.25
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.25
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.25
PRK08317	241	hypothetical protein; Provisional	99.25
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.24
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.24
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.24
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.24
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.22
PLN02336	475	phosphoethanolamine N-methyltransferase	99.21
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.2
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.19
PRK06202	232	hypothetical protein; Provisional	99.19
PRK12335	287	tellurite resistance protein TehB; Provisional	99.17
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.16
PRK06922	677	hypothetical protein; Provisional	99.15
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.14
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.14
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.14
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.13
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.12
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.11
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.11
PRK04266	226	fibrillarin; Provisional	99.07
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.07
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.06
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.04
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.03
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.03
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.03
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.02
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.02
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.02
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.01
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.01
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.0
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.99
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.98
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.97
TIGR00438	188	rrmJ cell division protein FtsJ.	98.97
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.97
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.96
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.93
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.91
KOG4300	252	consensus Predicted methyltransferase [General fun	98.9
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.89
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.88
PTZ00146	293	fibrillarin; Provisional	98.88
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.87
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.87
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.86
PRK14968	188	putative methyltransferase; Provisional	98.85
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.84
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.84
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.81
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.8
PRK14967	223	putative methyltransferase; Provisional	98.8
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.8
KOG3010	261	consensus Methyltransferase [General function pred	98.8
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.8
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.79
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.77
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.77
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.74
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.74
TIGR03438	301	probable methyltransferase. This model represents	98.74
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.72
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.7
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.7
PLN02244	340	tocopherol O-methyltransferase	98.7
KOG2361	264	consensus Predicted methyltransferase [General fun	98.69
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.69
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.68
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.67
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.66
PRK07402	196	precorrin-6B methylase; Provisional	98.64
PLN03075	296	nicotianamine synthase; Provisional	98.64
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.63
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.62
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.62
COG4123	248	Predicted O-methyltransferase [General function pr	98.6
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.59
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.58
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.58
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.55
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.55
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.54
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.5
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.5
PRK05785	226	hypothetical protein; Provisional	98.5
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.48
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.48
PRK04457	262	spermidine synthase; Provisional	98.44
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.43
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.43
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.42
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.42
PRK00811	283	spermidine synthase; Provisional	98.41
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.4
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.4
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.37
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.37
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.36
COG2890	280	HemK Methylase of polypeptide chain release factor	98.36
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.35
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.34
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.34
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.3
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.3
PLN02490	340	MPBQ/MSBQ methyltransferase	98.29
PRK01581	374	speE spermidine synthase; Validated	98.29
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.28
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.27
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.26
PRK08317	241	hypothetical protein; Provisional	98.25
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.25
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.25
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.24
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.23
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.22
KOG4300	252	consensus Predicted methyltransferase [General fun	98.19
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.18
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.17
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.17
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.16
KOG2940	325	consensus Predicted methyltransferase [General fun	98.16
PRK03612	521	spermidine synthase; Provisional	98.15
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.13
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.12
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.12
PHA03411	279	putative methyltransferase; Provisional	98.11
KOG1331	293	consensus Predicted methyltransferase [General fun	98.09
PLN02366	308	spermidine synthase	98.09
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.08
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.06
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.06
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.04
PRK06922	677	hypothetical protein; Provisional	98.04
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.03
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.02
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.02
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.99
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.98
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.98
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.98
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	97.95
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.94
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.94
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	97.93
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	97.93
KOG1271	227	consensus Methyltransferases [General function pre	97.9
PRK11207	197	tellurite resistance protein TehB; Provisional	97.89
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	97.88
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.87
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.87
PHA03412	241	putative methyltransferase; Provisional	97.86
COG2521	287	Predicted archaeal methyltransferase [General func	97.86
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.83
KOG3010	261	consensus Methyltransferase [General function pred	97.82
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.81
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.8
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.8
PLN02476	278	O-methyltransferase	97.74
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.73
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.72
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.72
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.71
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.7
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.7
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.7
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.68
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.65
PLN02672	1082	methionine S-methyltransferase	97.64
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.63
PRK06202	232	hypothetical protein; Provisional	97.62
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.62
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.59
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.56
PRK12335	287	tellurite resistance protein TehB; Provisional	97.55
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.54
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.52
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.52
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.5
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.49
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.44
KOG2899	288	consensus Predicted methyltransferase [General fun	97.42
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.41
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.41
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.4
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.4
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.37
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.37
COG4122	219	Predicted O-methyltransferase [General function pr	97.35
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.34
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.34
PLN03075	296	nicotianamine synthase; Provisional	97.31
KOG2940	325	consensus Predicted methyltransferase [General fun	97.31
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.3
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.3
KOG2904	328	consensus Predicted methyltransferase [General fun	97.25
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.22
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.21
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.2
PLN02823	336	spermine synthase	97.19
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.19
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.15
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.14
PRK04148	134	hypothetical protein; Provisional	97.13
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.06
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.05
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.03
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.02
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.02
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.98
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	96.98
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.95
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	96.94
PRK13699	227	putative methylase; Provisional	96.92
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	96.92
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.91
PRK00536	262	speE spermidine synthase; Provisional	96.9
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	96.86
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.85
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	96.84
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.83
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	96.83
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.81
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	96.69
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	96.67
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	96.65
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.58
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.57
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.56
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	96.56
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.54
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	96.53
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.46
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.45
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.43
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.43
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.42
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.42
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.4
KOG1331	293	consensus Predicted methyltransferase [General fun	96.39
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.38
PRK14967	223	putative methyltransferase; Provisional	96.37
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	96.37
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	96.36
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.33
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	96.32
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.3
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.3
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.29
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	96.27
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	96.26
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.24
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.21
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	96.2
PRK04266	226	fibrillarin; Provisional	96.2
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	96.19
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	96.18
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.17
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.15
PRK14968	188	putative methyltransferase; Provisional	96.13
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.12
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.07
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	95.94
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	95.9
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	95.88
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	95.88
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	95.86
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	95.86
PTZ00146	293	fibrillarin; Provisional	95.83
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	95.83
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.82
COG2521	287	Predicted archaeal methyltransferase [General func	95.79
PRK14904	445	16S rRNA methyltransferase B; Provisional	95.78
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	95.77
KOG3115	249	consensus Methyltransferase-like protein [General	95.76
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.75
TIGR03438	301	probable methyltransferase. This model represents	95.74
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	95.71
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	95.7
COG1041	347	Predicted DNA modification methylase [DNA replicat	95.67
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.67
PRK13699	227	putative methylase; Provisional	95.63
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	95.61
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	95.55
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.47
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	95.37
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	95.33
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.31
PLN02585	315	magnesium protoporphyrin IX methyltransferase	95.29
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	95.26
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	95.19
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	95.14
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	95.1
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	94.92
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	94.85
COG4798	238	Predicted methyltransferase [General function pred	94.85
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	94.83
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	94.81
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	94.8
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	94.79
PRK11524	284	putative methyltransferase; Provisional	94.78
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	94.72
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	94.71
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	94.69
TIGR00438	188	rrmJ cell division protein FtsJ.	94.66
PRK13256	226	thiopurine S-methyltransferase; Reviewed	94.54
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.53
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	94.51
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.38
PF03269	177	DUF268: Caenorhabditis protein of unknown function	94.33
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	94.28
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	94.27
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	94.26
PRK14902	444	16S rRNA methyltransferase B; Provisional	94.25
KOG2361	264	consensus Predicted methyltransferase [General fun	94.15
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.03
PRK00811	283	spermidine synthase; Provisional	94.01
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	93.94
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	93.63
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	93.55
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	93.18
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	93.14
PLN02668	386	indole-3-acetate carboxyl methyltransferase	93.1
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.1
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.09
PRK01581	374	speE spermidine synthase; Validated	92.94
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	92.9
PF03269	177	DUF268: Caenorhabditis protein of unknown function	92.9
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	92.7
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	92.57
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	92.45
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	92.42
KOG1271	227	consensus Methyltransferases [General function pre	92.37
COG2265	432	TrmA SAM-dependent methyltransferases related to t	92.27
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	92.26
PRK03612	521	spermidine synthase; Provisional	92.11
PRK04457	262	spermidine synthase; Provisional	91.9
COG0742	187	N6-adenine-specific methylase [DNA replication, re	91.88
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	91.56
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	91.32
PRK07402	196	precorrin-6B methylase; Provisional	91.12
PF13679	141	Methyltransf_32: Methyltransferase domain	90.98
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	90.85
KOG2899	288	consensus Predicted methyltransferase [General fun	90.84
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	90.52
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	90.45
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	90.38
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	90.22
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	90.15
COG4123	248	Predicted O-methyltransferase [General function pr	89.87
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	89.23
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	89.03
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	88.73
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	88.66
PRK11524	284	putative methyltransferase; Provisional	88.63
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	88.54
PLN02366	308	spermidine synthase	88.38
PHA03411	279	putative methyltransferase; Provisional	88.12
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	87.33
COG3897	218	Predicted methyltransferase [General function pred	87.31
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	87.01
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	86.92
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	86.06
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	85.36
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	85.33
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	85.19
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	84.98
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	84.85
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	84.81
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	84.8
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	83.98
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	83.96
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	83.86
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	83.44
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	82.42
COG2520	341	Predicted methyltransferase [General function pred	82.36
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	81.5
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	81.46
COG4122	219	Predicted O-methyltransferase [General function pr	81.39
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	81.25
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	80.92
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	80.8
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	80.2
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	80.06

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=6.1e-106  Score=810.32  Aligned_cols=347  Identities=53%  Similarity=1.077  Sum_probs=331.3

Q ss_pred             CCCCcCCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            1 MSLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         1 ms~ap~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      |||||+|.|++|+|||+|||+|++++++++++|||||++||+|||++|+++|+.+++.+|.|++|||||||||++|+||+
T Consensus       143 ~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  143 MSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             EEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence            89999999999999999999999999999999999999999999999999999998999999999999999999999999


Q ss_pred             C-CCChhhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCCChhcccccC-CCCCCCCCCCCCCCCCccccCccc
Q 017983           81 Y-RHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREE-NTPPLCDGKNNLNSSWHVPLSNCI  158 (363)
Q Consensus        81 ~-~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~~~c~~~~~~-~~~~~C~~~~~~~~~wy~~~~~Cl  158 (363)
                      | ++.+++.++|++|++||++|||++++++++     ++|||||.||+||++|+. +.||+|++++|||++||+||++||
T Consensus       223 ~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~-----~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Ci  297 (506)
T PF03141_consen  223 YQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGD-----TAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACI  297 (506)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHheeeCC-----EEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhc
Confidence            9 788889999999999999999999999988     899999999999999986 789999988999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CchhhccccchhHHHHHHHhhhh--ccccCCCCCceEEEecccc
Q 017983          159 SRLPTDSKGNLHSWPAPWPQRLSSKPPSLPP-----DSEEAFNKDTTHWYALVSDVYVG--GLAINWSSVRNVMDMNASY  231 (363)
Q Consensus       159 ~~~p~~~~~~~~~~p~~WP~rl~~~~~~l~~-----~~~e~F~~~~~~W~~~~~~~y~~--~l~i~~~~~r~VLDvGCG~  231 (363)
                      +|+|+......++++.+||+||+++|+||+.     ++.|.|.+|+++|++++.+ |..  .+.++++++||||||++|+
T Consensus       298 t~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~-Y~~l~~~~i~~~~iRNVMDMnAg~  376 (506)
T PF03141_consen  298 TPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSH-YKKLLGLAIKWGRIRNVMDMNAGY  376 (506)
T ss_pred             CcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHH-HHHhhcccccccceeeeeeecccc
Confidence            9999975445566899999999999999987     4799999999999999997 543  3458899999999999999


Q ss_pred             cHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHh
Q 017983          232 GGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRI  311 (363)
Q Consensus       232 G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RV  311 (363)
                      |+|||+|.+++||||||+|+..+++|.++++|||+|+||||||++++||+|||+||++.+|+++.++|+++++|.|||||
T Consensus       377 GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRI  456 (506)
T PF03141_consen  377 GGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRI  456 (506)
T ss_pred             cHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhh
Confidence            99999999999999999999888999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee--------cceEEEEEe
Q 017983          312 LRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY--------HDQFLVGKK  353 (363)
Q Consensus       312 LRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~--------~~~~li~~K  353 (363)
                      |||||++||+|..+++.+|++++++|+|++.+.        +|+||||||
T Consensus       457 LRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  457 LRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK  506 (506)
T ss_pred             cCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence            999999999999999999999999999999887        699999998

; GO: 0008168 methyltransferase activity

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=3.4e-40  Score=333.55  Aligned_cols=213  Identities=22%  Similarity=0.379  Sum_probs=181.4

Q ss_pred             CChhcccccCCCCCCCCCCCCCCCCCccccCcccccCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCC--------
Q 017983          125 SYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL------SSKPPSLPPD--------  190 (363)
Q Consensus       125 ~~~c~~~~~~~~~~~C~~~~~~~~~wy~~~~~Cl~~~p~~~~~~~~~~p~~WP~rl------~~~~~~l~~~--------  190 (363)
                      +.+-+++||+|    |+..++        +..|++|+|.   +|+  .|++||+|+      |+|++.|+..        
T Consensus        17 ~~~~~~~rERh----CP~~~~--------~~~CLVp~P~---gYk--~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~   79 (506)
T PF03141_consen   17 SRERMEHRERH----CPPPEE--------RLRCLVPPPK---GYK--TPIPWPKSRDYIWYANVPHTKLAEEKADQNWVR   79 (506)
T ss_pred             CcccccEeecc----CcCCCC--------CCccccCCCc---cCC--CCCCCCcccceeeecccCchHHhhhccccccee
Confidence            44566778888    887554        7999999998   457  799999999      8888888761        


Q ss_pred             -c--hhhccccchhHHHHHHHhhhhccc----c--CCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH
Q 017983          191 -S--EEAFNKDTTHWYALVSDVYVGGLA----I--NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII  260 (363)
Q Consensus       191 -~--~e~F~~~~~~W~~~~~~~y~~~l~----i--~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a  260 (363)
                       .  .-.|+..+..+.+.+.+ |++++.    +  ..+.+|++||+|||+|+||++|.+++|.+|++.+.|.+ .++++|
T Consensus        80 ~~gd~~~FPgggt~F~~Ga~~-Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfa  158 (506)
T PF03141_consen   80 VEGDKFRFPGGGTMFPHGADH-YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFA  158 (506)
T ss_pred             ecCCEEEeCCCCccccCCHHH-HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhh
Confidence             1  22689999999988886 886543    3  55789999999999999999999999999999999998 899999


Q ss_pred             HhcCceeeeccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC----------HHHHHH
Q 017983          261 FDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------LEMINK  329 (363)
Q Consensus       261 ~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------~~~~~~  329 (363)
                      .|||+..++....+.+|||| ++||+|||+.|+..|....++  +|.|++|||||||||+++-.          .+.+++
T Consensus       159 leRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~--~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~  236 (506)
T PF03141_consen  159 LERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGF--LLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNA  236 (506)
T ss_pred             hhcCcchhhhhhccccccCCccchhhhhcccccccchhcccc--eeehhhhhhccCceEEecCCcccccchHHHHHHHHH
Confidence            99998544443335789999 999999999999999877665  99999999999999999843          468999


Q ss_pred             HHHHHHhCCceeeeecceEEEEEeccCC
Q 017983          330 LKPVLHSLQWSTNIYHDQFLVGKKGFWR  357 (363)
Q Consensus       330 i~~l~~~l~W~~~~~~~~~li~~K~~w~  357 (363)
                      |++++++|||+..+++++++||||+.=.
T Consensus       237 ~~~l~~~lCW~~va~~~~~aIwqKp~~~  264 (506)
T PF03141_consen  237 MEDLAKSLCWKKVAEKGDTAIWQKPTNN  264 (506)
T ss_pred             HHHHHHHHHHHHheeeCCEEEEeccCCc
Confidence            9999999999999999999999998743

; GO: 0008168 methyltransferase activity

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.83  E-value=1.3e-20  Score=193.15  Aligned_cols=273  Identities=15%  Similarity=0.200  Sum_probs=155.6

Q ss_pred             CCCCHHHHHHHHHcC--C-Cceeeeccc--CCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALERG--I-PAILSVIGT--QKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~erg--~-p~~~~~~~~--~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|.++.  . .+.+.+.++  ..+||++++||+|+|+.+++|++++ ...++.++.|+|||||++++....
T Consensus        65 iD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~  144 (475)
T PLN02336         65 LDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC  144 (475)
T ss_pred             EeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            378899999887652  2 244555565  3689999999999999998887653 257999999999999999997432


Q ss_pred             CCCC-------Chhh---HHHHHHHHHH--Hhh---cceEEEEEecCCCceeEEEEecCCCCh-hcccccCCCCCCCCCC
Q 017983           80 VYRH-------DDRH---RSVWNAMVNL--TES---MCWKAVARSVDSNRIGFVIYQKPVSYS-CYKNREENTPPLCDGK  143 (363)
Q Consensus        80 ~~~~-------~~e~---~~~~~~~~~l--~~~---~cw~~~~~~~~~~~~~~~i~~k~~~~~-c~~~~~~~~~~~C~~~  143 (363)
                      ....       .+..   ...|..+-.-  ...   .-|.+..-...+    +.-|.+|.+|. -|.+..+.   +-.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~  217 (475)
T PLN02336        145 FHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSLVGCKC----IGAYVKNKKNQNQICWLWQK---VSSTN  217 (475)
T ss_pred             CCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEEEEeec----hhhhhhccCCcceEEEEEEe---ecCCc
Confidence            1111       1111   1223222111  011   112222221111    34466666542 22221111   11000


Q ss_pred             CCCCCCCccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccccchhHHHHHH--HhhhhccccCCCCC
Q 017983          144 NNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSEEAFNKDTTHWYALVS--DVYVGGLAINWSSV  221 (363)
Q Consensus       144 ~~~~~~wy~~~~~Cl~~~p~~~~~~~~~~p~~WP~rl~~~~~~l~~~~~e~F~~~~~~W~~~~~--~~y~~~l~i~~~~~  221 (363)
                      .       .....++-++     .|              .++.+.  ..+.|-..+..+...+.  +..++.+.+.  +.
T Consensus       218 ~-------~~~~~~~~~~-----~y--------------~~~~i~--~~~~f~g~~~~v~~~v~~te~l~~~~~~~--~~  267 (475)
T PLN02336        218 D-------KGFQRFLDNV-----QY--------------KSSGIL--RYERVFGEGFVSTGGLETTKEFVDKLDLK--PG  267 (475)
T ss_pred             c-------hhHHHHhhhh-----cc--------------ccccHH--HHHHHhCCCCCCCchHHHHHHHHHhcCCC--CC
Confidence            0       1122222210     00              000010  01111111111111111  1133333333  34


Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eee-eccccccCCCCC-CCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGM-YHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~-~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      .+|||+|||+|.++..|++..  ...++++|.+ +|+..|.++..     +.+ ..|. . .+||| ++||+|+|..++.
T Consensus       268 ~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~-~-~~~~~~~~fD~I~s~~~l~  343 (475)
T PLN02336        268 QKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADC-T-KKTYPDNSFDVIYSRDTIL  343 (475)
T ss_pred             CEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCc-c-cCCCCCCCEEEEEECCccc
Confidence            699999999999999888753  1257888988 89988876531     222 2342 2 36888 8999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |+++   .+.+|.|+.|+|||||.++|.|
T Consensus       344 h~~d---~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        344 HIQD---KPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             ccCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence            9874   5789999999999999999986

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.77  E-value=9.9e-19  Score=165.14  Aligned_cols=118  Identities=26%  Similarity=0.341  Sum_probs=94.9

Q ss_pred             ccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------eeee
Q 017983          197 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IGMY  269 (363)
Q Consensus       197 ~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------~~~~  269 (363)
                      ..++.|++....    .+++.  +..+|||+|||||.++..+++... ...|+++|.+ +||.++++|..      +..+
T Consensus        34 g~~~~Wr~~~i~----~~~~~--~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv  106 (238)
T COG2226          34 GLHRLWRRALIS----LLGIK--PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFV  106 (238)
T ss_pred             cchHHHHHHHHH----hhCCC--CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEE
Confidence            466889987764    23333  456999999999999999998643 4578999999 99999999954      2233


Q ss_pred             ccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983          270 HDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       270 ~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~  325 (363)
                      +..++ .|||| +|||+|.+++.|++++   +++.+|+||.|||||||.+++.|...
T Consensus       107 ~~dAe-~LPf~D~sFD~vt~~fglrnv~---d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         107 VGDAE-NLPFPDNSFDAVTISFGLRNVT---DIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             Eechh-hCCCCCCccCEEEeeehhhcCC---CHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            44455 59999 9999999999999876   57899999999999999999998643

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.72  E-value=9.5e-18  Score=158.14  Aligned_cols=118  Identities=20%  Similarity=0.297  Sum_probs=76.3

Q ss_pred             ccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------eeee
Q 017983          197 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IGMY  269 (363)
Q Consensus       197 ~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------~~~~  269 (363)
                      ..++.|++.+.+ .+   ...  +..+|||+|||||.++..|++.......|+++|.+ +||+.+.+|..      +..+
T Consensus        30 g~~~~wr~~~~~-~~---~~~--~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v  103 (233)
T PF01209_consen   30 GQDRRWRRKLIK-LL---GLR--PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFV  103 (233)
T ss_dssp             -------SHHHH-HH---T----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEE
T ss_pred             cHHHHHHHHHHh-cc---CCC--CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEE
Confidence            456889987765 22   223  34599999999999999998753233468899999 99999988732      3334


Q ss_pred             ccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          270 HDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       270 ~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      ...++ .+||+ +|||+|.|++++++++   +...+|.||+|||||||+++|.|..
T Consensus       104 ~~da~-~lp~~d~sfD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile~~  155 (233)
T PF01209_consen  104 QGDAE-DLPFPDNSFDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILEFS  155 (233)
T ss_dssp             E-BTT-B--S-TT-EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCHH-HhcCCCCceeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEeecc
Confidence            44455 49999 9999999999999776   4688999999999999999999854

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.65  E-value=1.8e-16  Score=124.81  Aligned_cols=89  Identities=27%  Similarity=0.435  Sum_probs=69.7

Q ss_pred             EEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCCCCC-CCcceeeecccccccccc
Q 017983          225 MDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       225 LDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~  298 (363)
                      ||+|||+|.++..|+++ +.   +++++|.+ ++++.+.++..   ........+ .+||+ ++||+|++..+++|+.  
T Consensus         1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~~~--   74 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAE-DLPFPDNSFDVVFSNSVLHHLE--   74 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTT-SSSS-TT-EEEEEEESHGGGSS--
T ss_pred             CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHH-hCccccccccccccccceeecc--
Confidence            89999999999999998 43   46778888 88998888764   223333233 58999 9999999999999983  


Q ss_pred             CCHHHHHHHHhHhccCCeEEEE
Q 017983          299 CDIADVAVEMDRILRPGGYVLV  320 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPGG~lii  320 (363)
                       +...++.|+.|+|||||+++|
T Consensus        75 -~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   75 -DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             -HHHHHHHHHHHHEEEEEEEEE
T ss_pred             -CHHHHHHHHHHHcCcCeEEeC
Confidence             468899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.62  E-value=1.4e-15  Score=145.17  Aligned_cols=98  Identities=21%  Similarity=0.246  Sum_probs=77.8

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc---------eeeeccccccCCCCC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL---------IGMYHDWCESFNTYP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl---------~~~~~d~~e~~lpfp-~sFDlVh~  288 (363)
                      ..+|||+|||+|.++..|+++ +.. ..|+++|.+ +|++.|.+|..         +......++ .+||+ ++||+|++
T Consensus        74 ~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~-~lp~~~~sfD~V~~  151 (261)
T PLN02233         74 GDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT-DLPFDDCYFDAITM  151 (261)
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc-cCCCCCCCEeEEEE
Confidence            469999999999999888864 211 257888999 89999876621         223333333 48999 99999999


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +++++|+++   +..+|.|+.|+|||||++++.|.
T Consensus       152 ~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~  183 (261)
T PLN02233        152 GYGLRNVVD---RLKAMQEMYRVLKPGSRVSILDF  183 (261)
T ss_pred             ecccccCCC---HHHHHHHHHHHcCcCcEEEEEEC
Confidence            999998864   67899999999999999999874

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.50  E-value=9.6e-14  Score=131.35  Aligned_cols=121  Identities=19%  Similarity=0.227  Sum_probs=90.8

Q ss_pred             CCCCCceEEEecccccHHHHHhhcCCCe-----EEEEeecCCc-chHHHHHhcC----c-----eeeeccccccCCCCC-
Q 017983          217 NWSSVRNVMDMNASYGGFAAALIDQPLW-----VMNVVPIDAP-DTLSIIFDRG----L-----IGMYHDWCESFNTYP-  280 (363)
Q Consensus       217 ~~~~~r~VLDvGCG~G~faa~L~~~~v~-----v~~v~~~d~s-~~L~~a~~Rg----l-----~~~~~d~~e~~lpfp-  280 (363)
                      .++...+||||+||||..|-.+.++--.     .-+|+..|.+ +||.++..|.    +     ...+...+| .|||| 
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE-~LpFdd  175 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE-DLPFDD  175 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc-cCCCCC
Confidence            3455589999999999998888765211     1467788988 8999887775    2     112222345 59999 


Q ss_pred             CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHH-HHHHHHHHhCCcee
Q 017983          281 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMI-NKLKPVLHSLQWST  341 (363)
Q Consensus       281 ~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~l~~~l~W~~  341 (363)
                      ++||+...++.++.+++   ++++|+|++|||||||.|.+.+.+.+- ..++.+.+.--.++
T Consensus       176 ~s~D~yTiafGIRN~th---~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V  234 (296)
T KOG1540|consen  176 DSFDAYTIAFGIRNVTH---IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV  234 (296)
T ss_pred             CcceeEEEecceecCCC---HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence            99999999999998775   688999999999999999999887654 45666555444433

>PRK05785 hypothetical protein; Provisional

Probab=99.49  E-value=1.1e-13  Score=129.71  Aligned_cols=107  Identities=20%  Similarity=0.249  Sum_probs=80.4

Q ss_pred             cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccC
Q 017983          198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESF  276 (363)
Q Consensus       198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~  276 (363)
                      .+..|++.+.. .+.... .  ...+|||+|||||.++..|++..  ...|+++|.+ +||+.+.++..  .++..++ .
T Consensus        33 ~~~~wr~~~~~-~l~~~~-~--~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~--~~~~d~~-~  103 (226)
T PRK05785         33 QDVRWRAELVK-TILKYC-G--RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADD--KVVGSFE-A  103 (226)
T ss_pred             CcHHHHHHHHH-HHHHhc-C--CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccc--eEEechh-h
Confidence            34678876654 232111 1  23599999999999999998763  1357889999 99999988753  2232334 4


Q ss_pred             CCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCe
Q 017983          277 NTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGG  316 (363)
Q Consensus       277 lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG  316 (363)
                      +||+ ++||+|+++++++|+.   +++.+|.||.|||||++
T Consensus       104 lp~~d~sfD~v~~~~~l~~~~---d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        104 LPFRDKSFDVVMSSFALHASD---NIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             CCCCCCCEEEEEecChhhccC---CHHHHHHHHHHHhcCce
Confidence            8999 9999999999998875   46889999999999953

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.44  E-value=1.4e-13  Score=118.95  Aligned_cols=94  Identities=23%  Similarity=0.474  Sum_probs=74.4

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeeccccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~  297 (363)
                      ...+|||+|||+|.++..|++.+.   .++++|.+ .+++.   +.......+  ....+++ ++||+|+|..+|+|+++
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~d   93 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLPD   93 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhccc
Confidence            356999999999999999988876   57788888 67766   333222221  1234456 99999999999999985


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                         +..+|.+|.|+|||||++++.+..
T Consensus        94 ---~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   94 ---PEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             ---HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             ---HHHHHHHHHHhcCCCCEEEEEEcC
Confidence               688999999999999999999864

...

>PLN02244 tocopherol O-methyltransferase

Probab=99.43  E-value=3e-13  Score=133.90  Aligned_cols=96  Identities=18%  Similarity=0.235  Sum_probs=74.9

Q ss_pred             CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      ...+|||+|||+|.++..|+++ +.   .|+++|.+ .|++.+.++    |+   +......++ .+||+ ++||+|++.
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~FD~V~s~  193 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-NQPFEDGQFDLVWSM  193 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-cCCCCCCCccEEEEC
Confidence            4568999999999999999875 33   46777888 788766553    33   222322233 47899 999999999


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      .+++|+++   ...++.|+.|+|||||+++|.+
T Consensus       194 ~~~~h~~d---~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        194 ESGEHMPD---KRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CchhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence            99999874   5789999999999999999975

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.43  E-value=2.6e-13  Score=133.78  Aligned_cols=96  Identities=17%  Similarity=0.180  Sum_probs=77.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|+..+.   .|+++|.+ +|++.|.++.    .   +...+..++ .+|++ ++||+|+|..+
T Consensus       132 g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~v  207 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEV  207 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhH
Confidence            35899999999999999987654   47788988 8999887652    1   223333233 36777 89999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      |+|+.+   ...+|.|+.|+|||||.++|.+.
T Consensus       208 LeHv~d---~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        208 IEHVAN---PAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             HHhcCC---HHHHHHHHHHHcCCCcEEEEEEC
Confidence            999875   47899999999999999999864

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.42  E-value=7.5e-13  Score=122.73  Aligned_cols=116  Identities=20%  Similarity=0.288  Sum_probs=82.4

Q ss_pred             cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c--eeeec
Q 017983          198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L--IGMYH  270 (363)
Q Consensus       198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l--~~~~~  270 (363)
                      ....|++.+..    .+.+++  ..+|||+|||+|.++..|++.......++++|.+ +|++.+.++.    +  +..+.
T Consensus        29 ~~~~~~~~~l~----~l~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~  102 (231)
T TIGR02752        29 RHKKWRKDTMK----RMNVQA--GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVH  102 (231)
T ss_pred             chHHHHHHHHH----hcCCCC--CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEE
Confidence            45566654433    233333  3599999999999999988641111257788887 8887776552    2  23333


Q ss_pred             cccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          271 DWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       271 d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ..++ .+|++ ++||+|++..+++|+++   ...+|.|+.|+|||||++++.+.
T Consensus       103 ~d~~-~~~~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       103 GNAM-ELPFDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             echh-cCCCCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence            3333 37888 99999999999988754   57899999999999999998764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.42  E-value=8.7e-13  Score=124.20  Aligned_cols=96  Identities=19%  Similarity=0.221  Sum_probs=76.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCC-CCcceeeecccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT  296 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~  296 (363)
                      ...+|||+|||+|.++..|+..+.   .++++|.+ +|++.+.++.. ...+....+ .+||+ ++||+|+++.++++..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~V~s~~~l~~~~  117 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIE-SLPLATATFDLAWSNLAVQWCG  117 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcc-cCcCCCCcEEEEEECchhhhcC
Confidence            456899999999999999987653   46788988 89999988853 222222233 47898 8999999998888654


Q ss_pred             ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          297 QRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       297 ~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                         ++..+|.|+.|+|||||.++++.
T Consensus       118 ---d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        118 ---NLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             ---CHHHHHHHHHHHcCCCeEEEEEe
Confidence               46889999999999999999985

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.40  E-value=5.6e-13  Score=126.20  Aligned_cols=97  Identities=22%  Similarity=0.231  Sum_probs=76.0

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCCCCcceeeecccccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~  298 (363)
                      ...+|||+|||+|.++..|+.... ...|+++|.+ .|++.+.++++.....| .+. ++..++||+|+|+.+|+|+++ 
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d-~~~-~~~~~~fD~v~~~~~l~~~~d-  104 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGD-VRD-WKPKPDTDVVVSNAALQWVPE-  104 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcC-hhh-CCCCCCceEEEEehhhhhCCC-
Confidence            346999999999999999987621 1247888988 89999998875333333 232 432389999999999999864 


Q ss_pred             CCHHHHHHHHhHhccCCeEEEEEc
Q 017983          299 CDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                        ...++.++.|+|||||++++..
T Consensus       105 --~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103        105 --HADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             --HHHHHHHHHHhCCCCcEEEEEc
Confidence              5789999999999999999963

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.40  E-value=6.2e-13  Score=127.19  Aligned_cols=105  Identities=19%  Similarity=0.254  Sum_probs=79.3

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----eeeeccccccCCCCC-CCccee
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLL  286 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~~~~~d~~e~~lpfp-~sFDlV  286 (363)
                      .+.+.+  ..+|||+|||+|.++..|+...  ...|+++|.+ +|++.+.++..    +......++ ..||+ ++||+|
T Consensus        47 ~l~l~~--~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~~~~~~~FD~V  121 (263)
T PTZ00098         47 DIELNE--NSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KKDFPENTFDMI  121 (263)
T ss_pred             hCCCCC--CCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cCCCCCCCeEEE
Confidence            344443  4599999999999999887642  1257888888 89988887632    333322223 37898 999999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++..++.|+.. .+...+|.|+.|+|||||++++.|.
T Consensus       122 ~s~~~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        122 YSRDAILHLSY-ADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             EEhhhHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            99999988752 2467899999999999999999874

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.38  E-value=2.2e-12  Score=118.12  Aligned_cols=131  Identities=18%  Similarity=0.243  Sum_probs=90.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--e-eeeccccccCCCCCCCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--I-GMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~-~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|++++.   +|+++|.+ .|++.+.++    ++  + ....|..  .++++++||+|+|..++
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~--~~~~~~~fD~I~~~~~~  105 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLN--NLTFDGEYDFILSTVVL  105 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChh--hCCcCCCcCEEEEecch
Confidence            35899999999999999998764   46777888 788766543    32  1 2223322  24566789999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcCH-----------H---HHHHHHHHHHhCCceeeeecceEEEEEeccCCC
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------E---MINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP  358 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------~---~~~~i~~l~~~l~W~~~~~~~~~li~~K~~w~~  358 (363)
                      +|++ ......++.++.|+|||||++++.+..           .   -..++.+...  .|+.....+.+....|+.|..
T Consensus       106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~~~~~g  182 (197)
T PRK11207        106 MFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHRTDANG  182 (197)
T ss_pred             hhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcccccCC
Confidence            8765 345788999999999999996553211           0   1233444444  587776666666677766654


Q ss_pred             C
Q 017983          359 T  359 (363)
Q Consensus       359 ~  359 (363)
                      .
T Consensus       183 ~  183 (197)
T PRK11207        183 N  183 (197)
T ss_pred             C
Confidence            4

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.36  E-value=1.4e-12  Score=106.94  Aligned_cols=98  Identities=24%  Similarity=0.331  Sum_probs=72.4

Q ss_pred             ceEEEecccccHHHHHhhc--CCCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCCCCCCCcceeeecc-
Q 017983          222 RNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYPRTYDLLHSSF-  290 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~--~~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~lpfp~sFDlVh~~~-  290 (363)
                      .+|||+|||+|.++.+|++  .+..   ++++|.+ .|++.+.++-    .   +..++........+...||+|++.. 
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   79 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF   79 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence            5899999999999999998  5544   6777888 7888877774    1   3334332211233447899999999 


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +++++.+......+|.++.+.|||||+++|.+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            55544433456789999999999999999975

...

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.35  E-value=4.6e-12  Score=115.86  Aligned_cols=130  Identities=16%  Similarity=0.235  Sum_probs=89.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-e-eeeccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-I-GMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~-~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++.+|++++.   .|+++|.+ .|++.+.++    |+ + ....+. . ..+++++||+|+++.+|+
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~-~~~~~~~fD~I~~~~~~~  105 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDI-N-AAALNEDYDFIFSTVVFM  105 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-h-hccccCCCCEEEEecccc
Confidence            35899999999999999998763   47788888 788765443    33 1 112221 1 245567899999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcC-----------HH---HHHHHHHHHHhCCceeeeecceEEEEEeccCCC
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LE---MINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP  358 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~---~~~~i~~l~~~l~W~~~~~~~~~li~~K~~w~~  358 (363)
                      |++. .+...++.++.|+|||||+++|.+.           ..   -..++.++..  .|+.....|.+..+.|+-|..
T Consensus       106 ~~~~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~~~~~  181 (195)
T TIGR00477       106 FLQA-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHATDANG  181 (195)
T ss_pred             cCCH-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecccccccccccCC
Confidence            8753 3567899999999999999665421           11   1234544444  388777776666666665543

Part of a tellurite-reducing operon tehA and tehB

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.35  E-value=2.2e-12  Score=122.23  Aligned_cols=96  Identities=20%  Similarity=0.199  Sum_probs=74.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ +|++.|.++    |+   +.++....+...+++ ++||+|+|..+
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v  121 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV  121 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence            46999999999999999998764   46788888 899888765    32   222332222223466 99999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |+|+.+   +..+|.++.|+|||||++++..
T Consensus       122 l~~~~~---~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        122 LEWVAD---PKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             HHhhCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence            999864   4689999999999999998864

>TIGR00452 methyltransferase, putative

Probab=99.32  E-value=7.3e-12  Score=123.13  Aligned_cols=96  Identities=14%  Similarity=0.034  Sum_probs=69.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHH--hc-----CceeeeccccccCCCCCCCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF--DR-----GLIGMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~--~R-----gl~~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      .++|||+|||+|.++..++..+..  .|+++|.+ .|+..+.  ++     ..+.......+ .+|+..+||+|+|..++
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~~~~FD~V~s~gvL  198 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHELYAFDTVFSMGVL  198 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCCCCCcCEEEEcchh
Confidence            469999999999999888877643  36777877 6765321  11     11222211122 36656789999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      .|+.+   +..+|.|++|+|||||.+++.+
T Consensus       199 ~H~~d---p~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       199 YHRKS---PLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             hccCC---HHHHHHHHHHhcCCCCEEEEEE
Confidence            99864   5789999999999999999863

Known examples to date are restricted to the proteobacteria.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.31  E-value=2.9e-11  Score=110.64  Aligned_cols=133  Identities=16%  Similarity=0.207  Sum_probs=93.0

Q ss_pred             hhHHHHHHHh-hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeecc
Q 017983          200 THWYALVSDV-YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHD  271 (363)
Q Consensus       200 ~~W~~~~~~~-y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d  271 (363)
                      ..|++.+.+. ++.. .++.  ..+|||+|||+|.++..++... ....|+++|.+ +|++.+.++    ++  +..+..
T Consensus        27 ~~~~~~~~d~l~l~~-~l~~--g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~  102 (187)
T PRK00107         27 ELWERHILDSLAIAP-YLPG--GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG  102 (187)
T ss_pred             HHHHHHHHHHHHHHh-hcCC--CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence            4787766431 1111 1222  4689999999999888887521 12257788888 788766543    33  333443


Q ss_pred             ccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee
Q 017983          272 WCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       272 ~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      .++. ++..++||+|+|...       .+++.++.++.|+|||||++++.+.......+.++++.+.|.....
T Consensus       103 d~~~-~~~~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~  167 (187)
T PRK00107        103 RAEE-FGQEEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEV  167 (187)
T ss_pred             cHhh-CCCCCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeee
Confidence            3333 333579999998642       2467899999999999999999998888899999999999986544

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.29  E-value=1.1e-12  Score=105.93  Aligned_cols=90  Identities=23%  Similarity=0.325  Sum_probs=54.7

Q ss_pred             EEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------eeeecccccc-CCCCC-CCcceeeeccccccc
Q 017983          225 MDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IGMYHDWCES-FNTYP-RTYDLLHSSFLLSDV  295 (363)
Q Consensus       225 LDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------~~~~~d~~e~-~lpfp-~sFDlVh~~~~l~~~  295 (363)
                      ||+|||+|.++..|.+.. ....++++|.| .|++.+.+|-.      .....-.... ..+.+ ++||+|++..+|+|+
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            899999999999998763 34568888988 88866555521      1111110111 12223 699999999999998


Q ss_pred             cccCCHHHHHHHHhHhccCCeEE
Q 017983          296 TQRCDIADVAVEMDRILRPGGYV  318 (363)
Q Consensus       296 ~~~~~~~~~L~Em~RVLRPGG~l  318 (363)
                         .++..+|..+.++|||||.+
T Consensus        80 ---~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 ---EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ---S-HHHHHHHHTTT-TSS-EE
T ss_pred             ---hhHHHHHHHHHHHcCCCCCC
Confidence               35789999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.29  E-value=1.1e-11  Score=122.12  Aligned_cols=96  Identities=20%  Similarity=0.170  Sum_probs=70.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH--Hhc--C---ceeeeccccccCCCCCCCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII--FDR--G---LIGMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a--~~R--g---l~~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      .++|||+|||+|.++..|+..+..  .|+++|.+ .|+..+  ..+  +   -+.+.....+ .+|++++||+|+|..++
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~~~~FD~V~s~~vl  199 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPALKAFDTVFSMGVL  199 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCCcCCcCEEEECChh
Confidence            469999999999999999887533  26777877 566432  111  1   1222322223 36778999999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +|..   ++..+|.++.|+|||||.+++.+
T Consensus       200 ~H~~---dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        200 YHRR---SPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             hccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence            9875   46789999999999999999863

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.28  E-value=2.2e-12  Score=122.09  Aligned_cols=70  Identities=26%  Similarity=0.349  Sum_probs=62.2

Q ss_pred             CCCCHHHHHHHHHcCCC-----ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALERGIP-----AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p-----~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.|++|+..|++|-..     +.+.+.+|+.|||||+|||+|.|+..+.+.++ ..++|+||.|||||||.+++.
T Consensus        81 ~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d-~~~aL~E~~RVlKpgG~~~vl  155 (238)
T COG2226          81 LDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD-IDKALKEMYRVLKPGGRLLVL  155 (238)
T ss_pred             EECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC-HHHHHHHHHHhhcCCeEEEEE
Confidence            48999999999999544     55678889999999999999999999988774 679999999999999988875

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.28  E-value=1.6e-11  Score=115.97  Aligned_cols=98  Identities=19%  Similarity=0.190  Sum_probs=73.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCCCCcceeeeccccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~  297 (363)
                      +..+|||+|||+|.++..|++.. ....|+++|.+ .|++.+.++.- +.......+ .++.+++||+|+++.+|+|+.+
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~-~~~~~~~fD~v~~~~~l~~~~d  108 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIA-SWQPPQALDLIFANASLQWLPD  108 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchh-ccCCCCCccEEEEccChhhCCC
Confidence            34699999999999999998752 12257788888 89998887742 222222222 2332389999999999998764


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                         ...+|.++.|+|||||++++..
T Consensus       109 ---~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        109 ---HLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             ---HHHHHHHHHHhcCCCcEEEEEC
Confidence               5789999999999999999963

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.28  E-value=1.5e-11  Score=118.00  Aligned_cols=130  Identities=17%  Similarity=0.198  Sum_probs=89.5

Q ss_pred             hhhccccchhHHHHHHHhhhhcc--ccCCCCCceEEEecccccH----HHHHhhcCC----CeEEEEeecCCc-chHHHH
Q 017983          192 EEAFNKDTTHWYALVSDVYVGGL--AINWSSVRNVMDMNASYGG----FAAALIDQP----LWVMNVVPIDAP-DTLSII  260 (363)
Q Consensus       192 ~e~F~~~~~~W~~~~~~~y~~~l--~i~~~~~r~VLDvGCG~G~----faa~L~~~~----v~v~~v~~~d~s-~~L~~a  260 (363)
                      ...|-.+...|...... .+..+  ....++..+|+|+|||+|.    +|..|++..    .+...|+++|.+ .||+.|
T Consensus        70 ~T~FfR~~~~~~~l~~~-vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A  148 (264)
T smart00138       70 ETRFFRESKHFEALEEK-VLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA  148 (264)
T ss_pred             CCcccCCcHHHHHHHHH-HhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence            45677788888775543 22211  1112334689999999995    555555531    124578999999 899988


Q ss_pred             HhcCc----------------------------------eeeeccccccCCCCC-CCcceeeeccccccccccCCHHHHH
Q 017983          261 FDRGL----------------------------------IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVA  305 (363)
Q Consensus       261 ~~Rgl----------------------------------~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L  305 (363)
                      .+.-.                                  ....+|..  ..+++ ++||+|+|..+|+|+.+ .....++
T Consensus       149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~--~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l  225 (264)
T smart00138      149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLL--AESPPLGDFDLIFCRNVLIYFDE-PTQRKLL  225 (264)
T ss_pred             HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCC--CCCCccCCCCEEEechhHHhCCH-HHHHHHH
Confidence            76420                                  11234432  25666 99999999999999964 3457899


Q ss_pred             HHHhHhccCCeEEEEEcCHH
Q 017983          306 VEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       306 ~Em~RVLRPGG~lii~D~~~  325 (363)
                      .++.|+|||||++++.....
T Consensus       226 ~~l~~~L~pGG~L~lg~~E~  245 (264)
T smart00138      226 NRFAEALKPGGYLFLGHSES  245 (264)
T ss_pred             HHHHHHhCCCeEEEEECccc
Confidence            99999999999999986543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.28  E-value=8.3e-12  Score=120.47  Aligned_cols=102  Identities=21%  Similarity=0.403  Sum_probs=69.9

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHH----HhcCc---eee-eccccccCCCC
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSII----FDRGL---IGM-YHDWCESFNTY  279 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a----~~Rgl---~~~-~~d~~e~~lpf  279 (363)
                      +++.+++++|  .+|||+|||.|+++.+++++ ++.   |+++..| ++.+.+    .++|+   +.+ ..|+    ..+
T Consensus        54 ~~~~~~l~~G--~~vLDiGcGwG~~~~~~a~~~g~~---v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~----~~~  124 (273)
T PF02353_consen   54 LCEKLGLKPG--DRVLDIGCGWGGLAIYAAERYGCH---VTGITLSEEQAEYARERIREAGLEDRVEVRLQDY----RDL  124 (273)
T ss_dssp             HHTTTT--TT---EEEEES-TTSHHHHHHHHHH--E---EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G----GG-
T ss_pred             HHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCcE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec----ccc
Confidence            5667777766  49999999999999999987 665   5556666 666554    45565   222 2232    334


Q ss_pred             CCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          280 PRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       280 p~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +.+||.|++-.+|+|+.. .+...++.+++|+|||||.+++.
T Consensus       125 ~~~fD~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  125 PGKFDRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             --S-SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred             CCCCCEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence            569999999999999964 46788999999999999999875

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.27  E-value=7.7e-12  Score=109.16  Aligned_cols=99  Identities=19%  Similarity=0.351  Sum_probs=75.2

Q ss_pred             CceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC--CCCCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT--YPRTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp--fp~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|++ .+. ...++++|.+ +|++.|.++    ++  +..++...+. ++  |++.||+|++..
T Consensus         4 ~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    4 NKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG   81 (152)
T ss_dssp             TSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence            35999999999999999994 221 1237788988 899888774    33  3344333333 55  668999999999


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      +++|+.+   ...+|.++.|.|+|||.+++.+..
T Consensus        82 ~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHFPD---PEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence            9987764   467999999999999999999876

...

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.26  E-value=1.6e-11  Score=117.14  Aligned_cols=98  Identities=17%  Similarity=0.170  Sum_probs=72.1

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcC----c--eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG----L--IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rg----l--~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|..+..++.. +. ...|+++|.+ +|++.+.++.    +  +..+....+ .+|++ ++||+|++..+
T Consensus        78 g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~-~l~~~~~~fD~Vi~~~v  155 (272)
T PRK11873         78 GETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE-ALPVADNSVDVIISNCV  155 (272)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchh-hCCCCCCceeEEEEcCc
Confidence            469999999999876655542 21 1246788888 8898887752    2  222222223 47888 89999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++|.++   ...++.|+.|+|||||++++.|.
T Consensus       156 ~~~~~d---~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        156 INLSPD---KERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             ccCCCC---HHHHHHHHHHHcCCCcEEEEEEe
Confidence            988754   57799999999999999999763

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.25  E-value=1.7e-11  Score=121.77  Aligned_cols=116  Identities=14%  Similarity=0.071  Sum_probs=84.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCCCCC-CCcceeeeccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLLSDV  295 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~  295 (363)
                      ..+|||+|||+|.++..+++.. ....++++|.+ +|++.+.++..   +..++...+ .+||+ ++||+|++..+++|+
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e-~lp~~~~sFDvVIs~~~L~~~  191 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAE-DLPFPTDYADRYVSAGSIEYW  191 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHH-hCCCCCCceeEEEEcChhhhC
Confidence            4689999999999988887631 11257788888 89998887632   223333233 47898 999999999999988


Q ss_pred             cccCCHHHHHHHHhHhccCCeEEEEEcCHH-----------------HHHHHHHHHHhCCcee
Q 017983          296 TQRCDIADVAVEMDRILRPGGYVLVQDTLE-----------------MINKLKPVLHSLQWST  341 (363)
Q Consensus       296 ~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-----------------~~~~i~~l~~~l~W~~  341 (363)
                      ++   .+.+|.|+.|+|||||++++.+...                 ..+++.+++++..++.
T Consensus       192 ~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~  251 (340)
T PLN02490        192 PD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD  251 (340)
T ss_pred             CC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence            75   4679999999999999998865311                 1355666666666654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.25  E-value=1.3e-11  Score=113.92  Aligned_cols=97  Identities=21%  Similarity=0.385  Sum_probs=72.8

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ++|||+|||+|.++..+++... ..+++++|.+ +++..+.++    |+   +..+....+ ..|++++||+|++..+++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~-~~~~~~~fD~I~~~~~l~   78 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA-KDPFPDTYDLVFGFEVIH   78 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc-cCCCCCCCCEeehHHHHH
Confidence            3799999999999999887421 1246677777 788777664    33   233332222 246778999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      |+.+   ...++.++.|+|||||++++.+.
T Consensus        79 ~~~~---~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       79 HIKD---KMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             hCCC---HHHHHHHHHHHcCCCCEEEEEEc
Confidence            9864   57899999999999999999864

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.25  E-value=3.2e-12  Score=100.46  Aligned_cols=70  Identities=24%  Similarity=0.386  Sum_probs=58.0

Q ss_pred             cCCCCHHHHHHHHHcCCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEE
Q 017983            5 PKDEHEAQIQFALERGIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIW   75 (363)
Q Consensus         5 p~D~~~~qvq~A~erg~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~   75 (363)
                      --|.++.+++.|+++..+  ..+...+.+.|||++++||+|+|..+++|+ ++...++.|+.|||||||++++
T Consensus        24 ~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   24 GIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHHHHHHHHHHHcCcCeEEeC
Confidence            348899999999998544  337778899999999999999999888887 4577999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK08317 hypothetical protein; Provisional

Probab=99.25  E-value=2.4e-11  Score=111.22  Aligned_cols=99  Identities=28%  Similarity=0.372  Sum_probs=75.1

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc--Cc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR--GL---IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R--gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ...+|||+|||+|.++..+++.......++++|.+ ++++.+.++  +.   +....... ..+|++ ++||+|++..++
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~~   97 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA-DGLPFPDGSFDAVRSDRVL   97 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc-ccCCCCCCCceEEEEechh
Confidence            34699999999999999988742111257788888 788888776  11   22222211 236788 999999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +|+.+   ...++.++.++|||||++++.+
T Consensus        98 ~~~~~---~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         98 QHLED---PARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             hccCC---HHHHHHHHHHHhcCCcEEEEEe
Confidence            99864   5789999999999999999875

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.24  E-value=9.3e-12  Score=117.22  Aligned_cols=99  Identities=17%  Similarity=0.245  Sum_probs=78.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCce-eeeccc---cccCCCCC-CCcceeeecccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-GMYHDW---CESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~-~~~~d~---~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      ..+|||+|||-|.++..|+..|.   +|+++|.+ +++++|..+... ++..++   ....+-.. .+||+|+|..+++|
T Consensus        60 g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH  136 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH  136 (243)
T ss_pred             CCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence            45899999999999999999884   47899999 899999866541 111111   01124455 79999999999999


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~  325 (363)
                      ++++   +.++++..+.|||||.+++++.+.
T Consensus       137 v~dp---~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         137 VPDP---ESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             cCCH---HHHHHHHHHHcCCCcEEEEecccc
Confidence            9864   679999999999999999997643

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.24  E-value=1.2e-11  Score=117.10  Aligned_cols=100  Identities=12%  Similarity=0.124  Sum_probs=73.1

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCCCCCCCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYPRTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~lpfp~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|+.. ......++++|.+ +|++.+.++-    .   +..+....+ .+|+ ..||+|++..+
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~-~~~~-~~~D~vv~~~~  134 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR-DIAI-ENASMVVLNFT  134 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh-hCCC-CCCCEEehhhH
Confidence            358999999999998888752 0011257888988 8999887762    1   223322222 2333 56999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++|++. .....++.||.|+|||||.+++.|.
T Consensus       135 l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        135 LQFLEP-SERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             HHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            999864 3467899999999999999999873

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.24  E-value=3.1e-11  Score=110.83  Aligned_cols=98  Identities=18%  Similarity=0.275  Sum_probs=75.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc--eeeeccccccCCCCC-CCcceeeecccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT  296 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~  296 (363)
                      ..+|||+|||+|.++..|++.... ..++++|.+ .++..+.++..  +..+....+ ..|++ ++||+|++..+++|..
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~  112 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWCD  112 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhcc
Confidence            368999999999999999876421 236778888 78888877642  222222223 36778 9999999999999875


Q ss_pred             ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          297 QRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       297 ~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +   ...+|.++.|+|||||++++.+.
T Consensus       113 ~---~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       113 D---LSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             C---HHHHHHHHHHHcCCCcEEEEEeC
Confidence            3   57899999999999999999753

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00740 methyltransferase, putative

Probab=99.24  E-value=1.6e-11  Score=115.12  Aligned_cols=100  Identities=13%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             CceEEEecccccHHHHHhhcCC-CeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~-v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++.. .....++++|.+ +|++.|.++    +.   +..++.... .+++ ..||+|+++.+
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~-~~~~-~~~d~v~~~~~  131 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR-HVEI-KNASMVILNFT  131 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCCC-CCCCEEeeecc
Confidence            4589999999999998887641 112357888888 899888765    11   222322111 2333 56999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++|+++. +...+|.++.|+|||||.++++|.
T Consensus       132 l~~~~~~-~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       132 LQFLPPE-DRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             hhhCCHH-HHHHHHHHHHHhcCCCeEEEEeec
Confidence            9998643 467899999999999999999974

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.22  E-value=3.5e-12  Score=103.86  Aligned_cols=91  Identities=21%  Similarity=0.309  Sum_probs=66.6

Q ss_pred             EEEecccccHHHHHhhcCC--CeEEEEeecCCc-chHHHHHhcCc-----eeeeccccccCCCCC-CCcceeeeccc-cc
Q 017983          224 VMDMNASYGGFAAALIDQP--LWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNTYP-RTYDLLHSSFL-LS  293 (363)
Q Consensus       224 VLDvGCG~G~faa~L~~~~--v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~~lpfp-~sFDlVh~~~~-l~  293 (363)
                      |||+|||+|..+..|++..  ..-..+.++|.+ +|+..+.++..     +..++..++ .+++. ++||+|+|+.. ++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~-~l~~~~~~~D~v~~~~~~~~   79 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADAR-DLPFSDGKFDLVVCSGLSLH   79 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTT-CHHHHSSSEEEEEE-TTGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHh-HCcccCCCeeEEEEcCCccC
Confidence            7999999999999888642  111457888999 89999888862     233443343 37777 89999999655 88


Q ss_pred             cccccCCHHHHHHHHhHhccCCe
Q 017983          294 DVTQRCDIADVAVEMDRILRPGG  316 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG  316 (363)
                      |+.+ ...+.++.++.++|||||
T Consensus        80 ~~~~-~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   80 HLSP-EELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GSSH-HHHHHHHHHHHHTEEEEE
T ss_pred             CCCH-HHHHHHHHHHHHHhCCCC
Confidence            8754 467899999999999998

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.21  E-value=3.2e-11  Score=123.84  Aligned_cols=98  Identities=19%  Similarity=0.357  Sum_probs=75.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-c---eeee-ccccccCCCCC-CCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-L---IGMY-HDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-l---~~~~-~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++..|++...   .|+++|.+ +|++.+.++. .   +..+ .|.....+|+| ++||+|+|..+++
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~  114 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM  114 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence            45899999999999999998643   46788888 8887765432 1   2222 23211247888 9999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |+++. .+..+|.|+.|+|||||++++.|
T Consensus       115 ~l~~~-~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        115 YLSDK-EVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             hCCHH-HHHHHHHHHHHhcCCCeEEEEEe
Confidence            98753 46789999999999999999986

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.20  E-value=3.9e-11  Score=114.98  Aligned_cols=91  Identities=18%  Similarity=0.274  Sum_probs=67.8

Q ss_pred             CceEEEecccccHHHHHhhcCCC--eEEEEeecCCc-chHHHHHhcCc-ee-eeccccccCCCCC-CCcceeeecccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPL--WVMNVVPIDAP-DTLSIIFDRGL-IG-MYHDWCESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v--~v~~v~~~d~s-~~L~~a~~Rgl-~~-~~~d~~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      ..+|||+|||+|.++..|++...  ....++++|.+ +|+..|.++.. +. ...| . ..+||+ ++||+|++...   
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d-~-~~lp~~~~sfD~I~~~~~---  160 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVAS-S-HRLPFADQSLDAIIRIYA---  160 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEee-c-ccCCCcCCceeEEEEecC---
Confidence            46899999999999999876421  11357889999 89999987743 22 2233 2 358999 99999997532   


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                       +      ..+.|+.|+|||||++++...
T Consensus       161 -~------~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        161 -P------CKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             -C------CCHHHHHhhccCCCEEEEEeC
Confidence             1      146899999999999999854

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.19  E-value=4.2e-11  Score=110.72  Aligned_cols=96  Identities=14%  Similarity=0.175  Sum_probs=73.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCC-CCcceeeeccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~  297 (363)
                      ..+|||+|||+|.++..|+.... ...++++|.+ +|++.|.++.. +......+.  -||+ ++||+|++..+|+|+. 
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~--~~~~~~sfD~V~~~~vL~hl~-  119 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLPNINIIQGSLF--DPFKDNFFDLVLTKGVLIHIN-  119 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCCCCcEEEeecc--CCCCCCCEEEEEECChhhhCC-
Confidence            46899999999999999987511 1257888988 89999987532 222332222  2788 9999999999999985 


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +..+..++.||.|++  +|+++|.+
T Consensus       120 p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       120 PDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             HHHHHHHHHHHHhhc--CcEEEEEE
Confidence            556789999999998  57888875

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK06202 hypothetical protein; Provisional

Probab=99.19  E-value=5.8e-11  Score=110.83  Aligned_cols=100  Identities=15%  Similarity=0.233  Sum_probs=73.6

Q ss_pred             CCCceEEEecccccHHHHHhhc----CCCeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCCCCC-CCcceeeec
Q 017983          219 SSVRNVMDMNASYGGFAAALID----QPLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~----~~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      .+..+|||+|||+|.++..|++    .+. ...++++|.+ +|++.+.++..   +......+ ..++++ ++||+|+|+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~l~~~~~~fD~V~~~  136 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS-DELVAEGERFDVVTSN  136 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEec-ccccccCCCccEEEEC
Confidence            3456999999999999888864    221 2358899998 89999988732   11111112 236677 899999999


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      .+|+|+++. .+..+|.||.|++|  |.++|.|.
T Consensus       137 ~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~dl  167 (232)
T PRK06202        137 HFLHHLDDA-EVVRLLADSAALAR--RLVLHNDL  167 (232)
T ss_pred             CeeecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence            999999764 35689999999999  56666664

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.17  E-value=6.5e-11  Score=114.45  Aligned_cols=94  Identities=22%  Similarity=0.322  Sum_probs=70.3

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-ee-eeccccccCCCCCCCcceeeecccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IG-MYHDWCESFNTYPRTYDLLHSSFLLSD  294 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~-~~~d~~e~~lpfp~sFDlVh~~~~l~~  294 (363)
                      .+|||+|||+|.++.+|++.+.   .|+++|.+ .+++.+.++    ++ +. ...|. . ..+++++||+|++..+|+|
T Consensus       122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~-~-~~~~~~~fD~I~~~~vl~~  196 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDI-N-SASIQEEYDFILSTVVLMF  196 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEech-h-cccccCCccEEEEcchhhh
Confidence            4899999999999999998764   46788888 777765443    43 11 12221 1 1234589999999999998


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++ ...+..++.+|.|+|||||++++.
T Consensus       197 l~-~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        197 LN-RERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             CC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            75 346788999999999999996653

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.16  E-value=8.4e-11  Score=118.53  Aligned_cols=100  Identities=18%  Similarity=0.330  Sum_probs=75.7

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc---eee-eccccccCCCCCCCccee
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL---IGM-YHDWCESFNTYPRTYDLL  286 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~-~~d~~e~~lpfp~sFDlV  286 (363)
                      .+.++++  .+|||+|||+|+++..+++. ++   .|+++|.+ +|++.+.++.-   +.+ ..|+    ...+++||+|
T Consensus       162 ~l~l~~g--~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~----~~l~~~fD~I  232 (383)
T PRK11705        162 KLQLKPG--MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDY----RDLNGQFDRI  232 (383)
T ss_pred             HhCCCCC--CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECch----hhcCCCCCEE
Confidence            3444443  59999999999999999874 43   47788988 89998888642   111 1221    2225899999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ++..+|+|+.. .+...++.++.|+|||||++++.+
T Consensus       233 vs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        233 VSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             EEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            99999999854 356789999999999999999964

>PRK06922 hypothetical protein; Provisional

Probab=99.15  E-value=5e-11  Score=126.20  Aligned_cols=101  Identities=14%  Similarity=0.190  Sum_probs=76.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eeeeccccccCCC--CC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNT--YP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~~lp--fp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|+... ....++++|.+ .|++.+.++..     +..+...+. .+|  |+ ++||+|+++.+
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~-dLp~~fedeSFDvVVsn~v  496 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAI-NLSSSFEKESVDTIVYSSI  496 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchH-hCccccCCCCEEEEEEchH
Confidence            4699999999999988887642 12367888999 89988877521     222222233 366  77 99999999999


Q ss_pred             cccccc----------cCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 LSDVTQ----------RCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~----------~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++|+.+          ..++..+|.|+.|+|||||.++|.|.
T Consensus       497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            887631          23568899999999999999999974

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.14  E-value=7.9e-11  Score=107.89  Aligned_cols=90  Identities=23%  Similarity=0.322  Sum_probs=71.8

Q ss_pred             ceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCC-CC-CCcceeeeccccccccc
Q 017983          222 RNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNT-YP-RTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lp-fp-~sFDlVh~~~~l~~~~~  297 (363)
                      .+|||+|||.|.+.++|.+ +++.+   .+++.. +.+..+.+||+.-+.+|. +..|+ || ++||.|+++..+.++.+
T Consensus        15 srVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dl-d~gL~~f~d~sFD~VIlsqtLQ~~~~   90 (193)
T PF07021_consen   15 SRVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDL-DEGLADFPDQSFDYVILSQTLQAVRR   90 (193)
T ss_pred             CEEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCH-HHhHhhCCCCCccEEehHhHHHhHhH
Confidence            5999999999999999987 55554   455666 678899999985444554 34464 99 99999999999999865


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEE
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                         ++.+|.||-||   |...|++
T Consensus        91 ---P~~vL~EmlRV---gr~~IVs  108 (193)
T PF07021_consen   91 ---PDEVLEEMLRV---GRRAIVS  108 (193)
T ss_pred             ---HHHHHHHHHHh---cCeEEEE
Confidence               57899999888   6677776

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.14  E-value=1.4e-10  Score=106.83  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=83.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC--CC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT--YP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp--fp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|++..- ...++++|.+ +|++.+.++    ++  +.++...+...++  ++ ++||+|++.+
T Consensus        41 ~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         41 APIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            46999999999999999877521 1257788888 788777653    22  3333332312355  77 9999999875


Q ss_pred             cccccc-----ccCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHhCCceeeee
Q 017983          291 LLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       291 ~l~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      ......     .......+|.++.|+|||||.++|. +.......+.+.+..-.|.+...
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~  179 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE  179 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence            543111     1112467999999999999999997 45556777777777667776643

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.14  E-value=1.2e-10  Score=105.74  Aligned_cols=109  Identities=15%  Similarity=0.249  Sum_probs=76.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh----cCc--eeeeccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~----Rgl--~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++..|+.... ...|+++|.+ +|++.+.+    .|+  +.++....+. ++..++||+|+|.. ++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~-~~~~~~fD~I~s~~-~~  119 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED-FQHEEQFDVITSRA-LA  119 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh-ccccCCccEEEehh-hh
Confidence            46999999999998888765321 1246777887 67655443    243  3334433333 33348999999865 33


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCC
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQ  338 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~  338 (363)
                            ++..++.++.|+|||||.+++........++..+.++++
T Consensus       120 ------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~  158 (181)
T TIGR00138       120 ------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQ  158 (181)
T ss_pred             ------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhh
Confidence                  346689999999999999999988777777777776644

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.13  E-value=8.6e-10  Score=98.97  Aligned_cols=117  Identities=14%  Similarity=0.086  Sum_probs=83.2

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeeecccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      .+|||+|||+|.++..++..+.   .++++|.+ +|++.+.++    +. +.++...+   ...+ ++||+|+++..+++
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDL---FKGVRGKFDVILFNPPYLP   94 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccc---ccccCCcccEEEECCCCCC
Confidence            5899999999999999998754   57788887 787766554    22 22222211   2223 79999999977765


Q ss_pred             ccccC------------------CHHHHHHHHhHhccCCeEEEEEcCHHH-HHHHHHHHHhCCceeeee
Q 017983          295 VTQRC------------------DIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       295 ~~~~~------------------~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~~l~W~~~~~  344 (363)
                      ..+..                  .++.+|.++.|+|||||.+++.+.... ...+.++++...+.....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~  163 (179)
T TIGR00537        95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV  163 (179)
T ss_pred             CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence            53210                  146789999999999999999876554 667777777777776554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.12  E-value=1.2e-10  Score=107.03  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=77.2

Q ss_pred             ccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----eeeeccccccCCC--CC-CCccee
Q 017983          215 AINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNT--YP-RTYDLL  286 (363)
Q Consensus       215 ~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~~~~~d~~e~~lp--fp-~sFDlV  286 (363)
                      .+....++++|++|||.|.|+..|+.+   +-.++.+|.+ ..++.|++|--    +...+    ..+|  .| ++||+|
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~----~dvp~~~P~~~FDLI  110 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQ----ADVPEFWPEGRFDLI  110 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEE----S-TTT---SS-EEEE
T ss_pred             hcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEE----CcCCCCCCCCCeeEE
Confidence            356678899999999999999999986   3468888998 78999988843    22222    1233  56 999999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      +++.++.++.+..++..++..+...|+|||.+++....
T Consensus       111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            99999999976667888999999999999999998654

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.11  E-value=3.5e-11  Score=113.61  Aligned_cols=70  Identities=23%  Similarity=0.463  Sum_probs=54.0

Q ss_pred             CCCCHHHHHHHHHc----CC-CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GI-PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~-p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.|+.|++.|+++    |. .+.+.+.+++.|||+|++||+|.|+..+.+.++ ..++|.|+.|||||||+|++-
T Consensus        78 vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d-~~~~l~E~~RVLkPGG~l~il  152 (233)
T PF01209_consen   78 VDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD-RERALREMYRVLKPGGRLVIL  152 (233)
T ss_dssp             EES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC-HHHHHHHHHHHcCCCeEEEEe
Confidence            48999999999987    23 467778889999999999999999999888774 678999999999999999885

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.11  E-value=1e-10  Score=111.29  Aligned_cols=96  Identities=18%  Similarity=0.226  Sum_probs=74.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----ee-------eeccccccCCCCCCCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IG-------MYHDWCESFNTYPRTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~-------~~~d~~e~~lpfp~sFDlVh  287 (363)
                      .++|||+|||+|-+...|+..+..   |+++|.+ +|+++|.++--     .+       ..+...|.   +...||+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~---V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~---~~~~fDaVv  163 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQ---VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG---LTGKFDAVV  163 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCe---eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh---cccccceee
Confidence            378999999999999999998755   6788888 89999988731     11       11111111   225599999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~  325 (363)
                      |+.+++|+.+   +..++.-+.+.|||||.++|++.+.
T Consensus       164 csevleHV~d---p~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  164 CSEVLEHVKD---PQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             eHHHHHHHhC---HHHHHHHHHHHhCCCCceEeeehhh
Confidence            9999999875   5779999999999999999998654

>PRK04266 fibrillarin; Provisional

Probab=99.07  E-value=1.7e-09  Score=101.72  Aligned_cols=99  Identities=16%  Similarity=0.220  Sum_probs=63.7

Q ss_pred             cccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH----Hhc-Cceeeecccccc--CCCCCCCcce
Q 017983          214 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII----FDR-GLIGMYHDWCES--FNTYPRTYDL  285 (363)
Q Consensus       214 l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a----~~R-gl~~~~~d~~e~--~lpfp~sFDl  285 (363)
                      +.+.++  .+|||+|||+|.++..|++... ...|.++|.+ .|++.+    .++ ++.....|-.+.  ..+++.+||+
T Consensus        68 l~i~~g--~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~  144 (226)
T PRK04266         68 FPIKKG--SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV  144 (226)
T ss_pred             CCCCCC--CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence            445554  5999999999999999987521 1247788888 777644    333 222233332111  1223477999


Q ss_pred             eeeccccccccccCCHHHHHHHHhHhccCCeEEEE
Q 017983          286 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV  320 (363)
Q Consensus       286 Vh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii  320 (363)
                      |++..     .++.....+|.|+.|+|||||+++|
T Consensus       145 i~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI  174 (226)
T PRK04266        145 IYQDV-----AQPNQAEIAIDNAEFFLKDGGYLLL  174 (226)
T ss_pred             EEECC-----CChhHHHHHHHHHHHhcCCCcEEEE
Confidence            98542     2222234578999999999999999

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.07  E-value=1.3e-09  Score=98.41  Aligned_cols=112  Identities=19%  Similarity=0.182  Sum_probs=79.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++..++.... ...++++|.+ .+++.+.++    ++  +.++...  ...+++++||+|++.....
T Consensus        32 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d--~~~~~~~~~D~v~~~~~~~  108 (187)
T PRK08287         32 AKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE--APIELPGKADAIFIGGSGG  108 (187)
T ss_pred             CCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC--chhhcCcCCCEEEECCCcc
Confidence            46999999999999998886531 1246777887 777776543    22  2222221  1234558899999876543


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCcee
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWST  341 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~~  341 (363)
                            .+..++.++.|+|||||++++.. ......++.++++...++.
T Consensus       109 ------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~  151 (187)
T PRK08287        109 ------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE  151 (187)
T ss_pred             ------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence                  34668999999999999999976 3456677888888888853

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.06  E-value=5.9e-10  Score=101.57  Aligned_cols=100  Identities=24%  Similarity=0.353  Sum_probs=74.5

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      +..+|||+|||+|.++..++........++++|.+ .++..+.++..    +...+.... .++++ ++||+|+++.+++
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~  117 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLR  117 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeC
Confidence            34699999999999999888753211357777877 77777776542    222222222 36677 8999999999998


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      |..   ++..++.++.++|||||++++.+.
T Consensus       118 ~~~---~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       118 NVT---DIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             Ccc---cHHHHHHHHHHHcCCCcEEEEEEe
Confidence            765   467899999999999999998753

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.04  E-value=1.4e-09  Score=100.13  Aligned_cols=98  Identities=26%  Similarity=0.370  Sum_probs=73.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-------ceeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------LIGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-------l~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..++........++++|.+ ++++.+.++.       .+..+....+ .++++ ++||+|+++.+
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEecc
Confidence            3689999999999998887753112357788887 7887776652       1223322222 35677 89999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ++++.   +...+|.++.++|+|||++++.+
T Consensus       131 l~~~~---~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        131 LRNVP---DIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             cccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence            98765   46789999999999999999875

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.03  E-value=1.6e-09  Score=89.70  Aligned_cols=94  Identities=17%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..+++.... ..++++|.+ .+++.+.+.    ++  +..+.......+++. .+||.|++....
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~   98 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG   98 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence            359999999999999999875211 357788887 777765432    22  222211111124444 899999987654


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++      ...++.++.|+|||||++++.
T Consensus        99 ~~------~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        99 GL------LQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             hh------HHHHHHHHHHHcCCCCEEEEE
Confidence            43      357999999999999999985

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.03  E-value=1.7e-09  Score=104.87  Aligned_cols=136  Identities=16%  Similarity=0.207  Sum_probs=87.2

Q ss_pred             hccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceee
Q 017983          194 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGM  268 (363)
Q Consensus       194 ~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~  268 (363)
                      .|-...+-..+.+.. .+..+. .  +..+|||+|||+|.++.+++..+..  .|+++|.+ .+++.+.+..    +...
T Consensus       137 aFgtG~h~tt~l~l~-~l~~~~-~--~g~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~  210 (288)
T TIGR00406       137 AFGTGTHPTTSLCLE-WLEDLD-L--KDKNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDR  210 (288)
T ss_pred             cccCCCCHHHHHHHH-HHHhhc-C--CCCEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence            454545545454443 343322 1  2369999999999999888876542  57788888 7888776653    1111


Q ss_pred             eccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCceee
Q 017983          269 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       269 ~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~  342 (363)
                      +........+++ +.||+|+++.+..+      +..++.++.|+|||||+++++... +....+.+..++. |+..
T Consensus       211 ~~~~~~~~~~~~~~~fDlVvan~~~~~------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~  279 (288)
T TIGR00406       211 LQVKLIYLEQPIEGKADVIVANILAEV------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV  279 (288)
T ss_pred             eEEEecccccccCCCceEEEEecCHHH------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence            111111134455 89999999865432      456999999999999999998653 3445566655554 6543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.03  E-value=2.7e-10  Score=101.21  Aligned_cols=71  Identities=18%  Similarity=0.121  Sum_probs=60.6

Q ss_pred             CCCHHHHHHHHHcC--------CCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALERG--------IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~erg--------~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.|+.|++.|++|.        ..+.+.+.+++.|||++++||+|+|+.+++++. +...+|+|+.|||||||.|++...
T Consensus         4 D~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~   82 (160)
T PLN02232          4 DFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSILDF   82 (160)
T ss_pred             cCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence            89999999997652        125677788999999999999999999887775 467899999999999999998744

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.02  E-value=7.8e-10  Score=102.57  Aligned_cols=99  Identities=18%  Similarity=0.123  Sum_probs=62.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccC-------CCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESF-------NTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~-------lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|++.......|+++|.+.|...   .++.....| .+..       -+++ .+||+|+++.+.
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~---~~v~~i~~D-~~~~~~~~~i~~~~~~~~~D~V~S~~~~  127 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI---VGVDFLQGD-FRDELVLKALLERVGDSKVQVVMSDMAP  127 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC---CCcEEEecC-CCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence            358999999999999888875321124566666543221   232222233 2221       1366 899999998655


Q ss_pred             ccccccC-C-------HHHHHHHHhHhccCCeEEEEEcC
Q 017983          293 SDVTQRC-D-------IADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       293 ~~~~~~~-~-------~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ....+.. +       .+.+|.|+.|+|||||.+++...
T Consensus       128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~  166 (209)
T PRK11188        128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF  166 (209)
T ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            4332210 1       25689999999999999999643

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.02  E-value=8.9e-11  Score=109.96  Aligned_cols=146  Identities=16%  Similarity=0.264  Sum_probs=102.8

Q ss_pred             hhccccchhHHHHHHH--hh-----hhc-cc-cCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh
Q 017983          193 EAFNKDTTHWYALVSD--VY-----VGG-LA-INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD  262 (363)
Q Consensus       193 e~F~~~~~~W~~~~~~--~y-----~~~-l~-i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~  262 (363)
                      .-|+.-.+++.+.+.+  .|     +.+ ++ ...+..+++||+|||||-++-+|.+..   -.+.++|.| |||..|.+
T Consensus        89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~e  165 (287)
T COG4976          89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHE  165 (287)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHh
Confidence            4566666666665543  12     111 11 345668999999999999999987752   236888999 99999999


Q ss_pred             cCce-eeeccccccCCC-CC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-------------H-
Q 017983          263 RGLI-GMYHDWCESFNT-YP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-------------E-  325 (363)
Q Consensus       263 Rgl~-~~~~d~~e~~lp-fp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-------------~-  325 (363)
                      ||+. ..++.....|++ -. +-||+|.+..||.++.+   ++.++.=..+.|.|||.|++|-..             . 
T Consensus       166 Kg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~Ry  242 (287)
T COG4976         166 KGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRY  242 (287)
T ss_pred             ccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhh
Confidence            9982 222322233555 34 89999999999998864   678999999999999999998311             0 


Q ss_pred             --HHHHHHHHHHhCCceeeee
Q 017983          326 --MINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       326 --~~~~i~~l~~~l~W~~~~~  344 (363)
                        -...|..+..+-..++...
T Consensus       243 AH~~~YVr~~l~~~Gl~~i~~  263 (287)
T COG4976         243 AHSESYVRALLAASGLEVIAI  263 (287)
T ss_pred             ccchHHHHHHHHhcCceEEEe
Confidence              1356777777777766544

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.02  E-value=1.3e-09  Score=103.41  Aligned_cols=114  Identities=15%  Similarity=0.242  Sum_probs=78.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeecccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~  298 (363)
                      ..+|||+|||+|.++.+++..+..  .|+++|.+ .+++.+.++.....+.+..  .++.. .+||+|+|+....     
T Consensus       120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~--~~~~~~~~fD~Vvani~~~-----  190 (250)
T PRK00517        120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNV--YLPQGDLKADVIVANILAN-----  190 (250)
T ss_pred             CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceE--EEccCCCCcCEEEEcCcHH-----
Confidence            469999999999998888776543  37788888 7888776653211111100  12222 2799999874332     


Q ss_pred             CCHHHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCceeeee
Q 017983          299 CDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~  344 (363)
                       .+..++.++.|+|||||++++++... ....+.+.++...++....
T Consensus       191 -~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~  236 (250)
T PRK00517        191 -PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV  236 (250)
T ss_pred             -HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence             24568999999999999999997543 4567777777777775443

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.01  E-value=2.3e-09  Score=99.07  Aligned_cols=97  Identities=11%  Similarity=0.093  Sum_probs=73.1

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-------eeeeccccccCCCCCCCcceeeeccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-------IGMYHDWCESFNTYPRTYDLLHSSFL  291 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-------~~~~~d~~e~~lpfp~sFDlVh~~~~  291 (363)
                      +..+|||+|||+|.++..|++.+.   .++++|.+ +|+..+.++..       +...+...+ .+  +++||+|++..+
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-~~--~~~fD~ii~~~~  128 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL-SL--CGEFDIVVCMDV  128 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh-hC--CCCcCEEEEhhH
Confidence            356999999999999999998754   46788988 89988877632       222222111 12  389999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++|++. .++..++.++.|++++|+++.+...
T Consensus       129 l~~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~  159 (219)
T TIGR02021       129 LIHYPA-SDMAKALGHLASLTKERVIFTFAPK  159 (219)
T ss_pred             HHhCCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence            998854 3577899999999999888887644

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.01  E-value=4e-09  Score=96.43  Aligned_cols=143  Identities=13%  Similarity=0.157  Sum_probs=86.8

Q ss_pred             hhccc--cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc
Q 017983          193 EAFNK--DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL  265 (363)
Q Consensus       193 e~F~~--~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl  265 (363)
                      +.|..  +...++..+..--+..+.+..  ..+|||+|||+|.++..++..-.....|+.+|.+ .+++.+.++    |+
T Consensus        13 ~~~~~~~~~~~t~~~~r~~~l~~l~~~~--~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~   90 (198)
T PRK00377         13 EEFERDEEIPMTKEEIRALALSKLRLRK--GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV   90 (198)
T ss_pred             HHHccCCCCCCCHHHHHHHHHHHcCCCC--cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence            44443  334555544321122344443  3599999999999988876531111246778887 788766544    32


Q ss_pred             ---eeeeccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHhCCce
Q 017983          266 ---IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSLQWS  340 (363)
Q Consensus       266 ---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l~W~  340 (363)
                         +.++.......++.. ..||+|++...      ...+..++.++.|+|||||++++. -..+.+.++...++.+.++
T Consensus        91 ~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~  164 (198)
T PRK00377         91 LNNIVLIKGEAPEILFTINEKFDRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN  164 (198)
T ss_pred             CCCeEEEEechhhhHhhcCCCCCEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence               222222222234444 78999998532      124678999999999999999883 2344566677777666665


Q ss_pred             eee
Q 017983          341 TNI  343 (363)
Q Consensus       341 ~~~  343 (363)
                      ..+
T Consensus       165 ~~~  167 (198)
T PRK00377        165 LEI  167 (198)
T ss_pred             eEE
Confidence            443

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.00  E-value=9.7e-10  Score=99.96  Aligned_cols=88  Identities=22%  Similarity=0.269  Sum_probs=66.3

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCC-CCC-CCcceeeecccccccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFN-TYP-RTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~l-pfp-~sFDlVh~~~~l~~~~~~  298 (363)
                      .+|||+|||+|.++..|++...  .++.++|.+ +++..+.++++.....+ .+..+ +++ ++||+|+|+.+|+|+++ 
T Consensus        15 ~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d-~~~~l~~~~~~sfD~Vi~~~~l~~~~d-   90 (194)
T TIGR02081        15 SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGD-LDEGLEAFPDKSFDYVILSQTLQATRN-   90 (194)
T ss_pred             CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEE-hhhcccccCCCCcCEEEEhhHhHcCcC-
Confidence            4899999999999999876421  134677887 88988888875333333 22234 477 89999999999999864 


Q ss_pred             CCHHHHHHHHhHhccCC
Q 017983          299 CDIADVAVEMDRILRPG  315 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPG  315 (363)
                        ...+|+||.|+++++
T Consensus        91 --~~~~l~e~~r~~~~~  105 (194)
T TIGR02081        91 --PEEILDEMLRVGRHA  105 (194)
T ss_pred             --HHHHHHHHHHhCCeE
Confidence              578999999987754

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.99  E-value=1.8e-09  Score=103.21  Aligned_cols=71  Identities=21%  Similarity=0.147  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHcC-------C-CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALERG-------I-PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~erg-------~-p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.|+.|++.|.+|.       . .+.+.+.+++.|||++++||+|+|+.+++|+. ++..+|.|+.|||||||+|++..
T Consensus       104 vD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        104 LDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             EECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCC-CHHHHHHHHHHHcCcCcEEEEEE
Confidence            389999999998762       1 35567788999999999999999999987776 47789999999999999999974

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.98  E-value=1.7e-09  Score=98.75  Aligned_cols=120  Identities=14%  Similarity=0.198  Sum_probs=76.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCC--CCC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFN--TYP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~l--pfp-~sFDlVh~~~  290 (363)
                      ...|||+|||+|.++..|+.... ..+++++|.+ .|+..+.++    |+  +.+++..+...+  .++ ++||.|++.+
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            35899999999999999987532 1257788887 787776543    32  333333222211  256 7999999875


Q ss_pred             cccccc-----ccCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHh-CCcee
Q 017983          291 LLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHS-LQWST  341 (363)
Q Consensus       291 ~l~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~-l~W~~  341 (363)
                      -..+..     .+.....++.++.|+|||||.+++. |.......+.+.+.. -+|+.
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~  153 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN  153 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence            433211     1111257999999999999999886 444455555444433 33443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.97  E-value=1.4e-09  Score=105.69  Aligned_cols=99  Identities=17%  Similarity=0.326  Sum_probs=69.8

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHh----cCc---eeee-ccccccCCCCCCCcceeeeccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFD----RGL---IGMY-HDWCESFNTYPRTYDLLHSSFL  291 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~----Rgl---~~~~-~d~~e~~lpfp~sFDlVh~~~~  291 (363)
                      +.++|||+|||+|.++..++++.-. ..++..|.+.+++.+.+    .|+   +..+ +|..+  .++| .+|+|+++++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~--~~~~-~~D~v~~~~~  224 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK--ESYP-EADAVLFCRI  224 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccC--CCCC-CCCEEEeEhh
Confidence            4579999999999999999875311 23556676667766544    344   2222 33111  3455 4799999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++++.+ .....+|+++.|+|||||+++|.|.
T Consensus       225 lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       225 LYSANE-QLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             hhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            998753 3346799999999999999999874

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.97  E-value=1.7e-09  Score=97.97  Aligned_cols=98  Identities=15%  Similarity=0.120  Sum_probs=59.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCC------CCC-CCcceeeecccc-
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFN------TYP-RTYDLLHSSFLL-  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~l------pfp-~sFDlVh~~~~l-  292 (363)
                      ..+|||+|||+|+++..++.+......|+++|.+.+.   ...++.....|..+..+      .++ ++||+|++.... 
T Consensus        33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~  109 (188)
T TIGR00438        33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPN  109 (188)
T ss_pred             CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCC
Confidence            4599999999999988887642111135666766332   11233222223211110      256 789999986432 


Q ss_pred             -------ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          293 -------SDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       293 -------~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                             .|....+..+.+|.++.|+|||||++++.
T Consensus       110 ~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438       110 ISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             CCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence                   12111122467999999999999999994

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.97  E-value=2.1e-09  Score=98.96  Aligned_cols=127  Identities=20%  Similarity=0.262  Sum_probs=81.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-c----hHHHHHhcCc-ee-eeccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-D----TLSIIFDRGL-IG-MYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~----~L~~a~~Rgl-~~-~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..++||+|||.|.-+.+|+++|..   |+++|.+ .    ..++|.++++ +. ...|. + ...+++.||+|++..+|.
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl-~-~~~~~~~yD~I~st~v~~  105 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADL-N-DFDFPEEYDFIVSTVVFM  105 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG-C-CBS-TTTEEEEEEESSGG
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecc-h-hccccCCcCEEEEEEEec
Confidence            359999999999999999999865   4555655 2    3345666676 32 23332 2 134568899999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcC-----------HHHHHHHHHHH-HhCCceeeeecceEEEEEe
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LEMINKLKPVL-HSLQWSTNIYHDQFLVGKK  353 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~~~~~i~~l~-~~l~W~~~~~~~~~li~~K  353 (363)
                      |++ +..+..++..|..-|+|||+++|-..           .++.-+-.+|. .=-.|+.....|.+--..|
T Consensus       106 fL~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~E~~g~~h~  176 (192)
T PF03848_consen  106 FLQ-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYNEDVGELHR  176 (192)
T ss_dssp             GS--GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEEEEEEEEEE
T ss_pred             cCC-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEEccccceee
Confidence            886 45778999999999999999888321           12222222333 2225988877666654444

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.96  E-value=2.3e-09  Score=103.79  Aligned_cols=100  Identities=21%  Similarity=0.386  Sum_probs=76.8

Q ss_pred             hccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHH----hcCce---e-eeccccccCCCCCC
Q 017983          212 GGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIF----DRGLI---G-MYHDWCESFNTYPR  281 (363)
Q Consensus       212 ~~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~----~Rgl~---~-~~~d~~e~~lpfp~  281 (363)
                      +.+++++|  .+|||+|||-|+++.+++++ ++.   |++++.| ++...+.    ++|+.   . .++||    -.+..
T Consensus        66 ~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~----rd~~e  136 (283)
T COG2230          66 EKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY----RDFEE  136 (283)
T ss_pred             HhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc----ccccc
Confidence            35667766  49999999999999999986 666   5666777 6765544    45663   2 24553    22346


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      .||-|++..+|+|+.. .+..+++.-++++|+|||.+++-
T Consensus       137 ~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh  175 (283)
T COG2230         137 PFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH  175 (283)
T ss_pred             ccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence            6999999999999975 57889999999999999998875

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.93  E-value=9.1e-08  Score=99.90  Aligned_cols=120  Identities=8%  Similarity=0.101  Sum_probs=72.7

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-----chHHHHHhcCc--eeeecccccc-CCCCC-CCcceeeecc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDRGL--IGMYHDWCES-FNTYP-RTYDLLHSSF  290 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-----~~L~~a~~Rgl--~~~~~d~~e~-~lpfp-~sFDlVh~~~  290 (363)
                      ....+||+|||.|.|...++...-. .++++++..     ..+..+.++|+  +.++.+..+. ..-|| +++|.|+..+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F  425 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF  425 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence            3468999999999999999975322 145555554     34455566665  2222221111 01267 9999999864


Q ss_pred             ccc-----cccccCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHH-HhCCce
Q 017983          291 LLS-----DVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVL-HSLQWS  340 (363)
Q Consensus       291 ~l~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~-~~l~W~  340 (363)
                      -=.     |-..+---...|.++.|+|||||.+.+. |..++...+.+.. ..-.|+
T Consensus       426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~  482 (506)
T PRK01544        426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFE  482 (506)
T ss_pred             CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeE
Confidence            322     1111111267999999999999998886 5555555544444 333344

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.91  E-value=5.9e-09  Score=96.19  Aligned_cols=94  Identities=16%  Similarity=0.117  Sum_probs=70.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++.+..   ++++|.+ +|++.+.++-    .   +....    ..++++ ++||+|++..+
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~----~d~~~~~~~fD~v~~~~~  136 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPEAGLAGNITFEV----GDLESLLGRFDTVVCLDV  136 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccCcEEEE----cCchhccCCcCEEEEcch
Confidence            469999999999999999887643   7888988 8998887762    1   12222    125566 89999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ++|+++. .+..++.++.|++++|+.+.+..
T Consensus       137 l~~~~~~-~~~~~l~~l~~~~~~~~~i~~~~  166 (230)
T PRK07580        137 LIHYPQE-DAARMLAHLASLTRGSLIFTFAP  166 (230)
T ss_pred             hhcCCHH-HHHHHHHHHHhhcCCeEEEEECC
Confidence            9988653 46789999999887666555443

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.90  E-value=3.3e-09  Score=98.20  Aligned_cols=98  Identities=20%  Similarity=0.265  Sum_probs=70.0

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-----c--eeeeccccccCCC-CC-CCcceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----L--IGMYHDWCESFNT-YP-RTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-----l--~~~~~d~~e~~lp-fp-~sFDlVh~~~~  291 (363)
                      -.||.+|||||.--.++-..+  +-.|+.+|.+ +|-+++.++.     +  ...++...| .+| .+ .|||.|+|..+
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p--~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge-~l~~l~d~s~DtVV~Tlv  154 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKP--INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGE-NLPQLADGSYDTVVCTLV  154 (252)
T ss_pred             cceEEecccCCCCcccccCCC--CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechh-cCcccccCCeeeEEEEEE
Confidence            468999999997544444332  2245666766 7776655443     1  213333344 477 67 99999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~  325 (363)
                      |-...   +.++.|.|+.|+|||||.+++.+...
T Consensus       155 LCSve---~~~k~L~e~~rlLRpgG~iifiEHva  185 (252)
T KOG4300|consen  155 LCSVE---DPVKQLNEVRRLLRPGGRIIFIEHVA  185 (252)
T ss_pred             EeccC---CHHHHHHHHHHhcCCCcEEEEEeccc
Confidence            98554   56899999999999999999998653

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.89  E-value=5.8e-09  Score=96.01  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=70.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCC-CCCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTY-PRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpf-p~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..+++.+..   ++++|.+ .++..+.++    +.  +.......+..... +++||+|++..++
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            468999999999999988876533   6677877 777776654    22  22222222222222 2799999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +|..   ++..+|.++.++|+|||.+++.+.
T Consensus       123 ~~~~---~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       123 EHVP---DPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             HhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence            9875   457899999999999999998753

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.88  E-value=5e-09  Score=96.57  Aligned_cols=93  Identities=14%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.+++.|++.-.....|+++|.+ ++++.+.++    |+   +.+++..+...++...+||+|++...+
T Consensus        73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~  152 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA  152 (205)
T ss_pred             CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence            3699999999999998887631001146777877 777766543    32   233332222222222899999999877


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      .+++         .|+.|+|||||++++..
T Consensus       153 ~~~~---------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        153 STIP---------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             chhh---------HHHHHhcCcCcEEEEEE
Confidence            6543         47889999999998854

>PTZ00146 fibrillarin; Provisional

Probab=98.88  E-value=2.3e-08  Score=97.46  Aligned_cols=101  Identities=14%  Similarity=0.109  Sum_probs=66.9

Q ss_pred             cccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-c----hHHHHHhc-Cceeeecccccc-CCCCC-CCcce
Q 017983          214 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-D----TLSIIFDR-GLIGMYHDWCES-FNTYP-RTYDL  285 (363)
Q Consensus       214 l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~----~L~~a~~R-gl~~~~~d~~e~-~lpfp-~sFDl  285 (363)
                      +.|+++  .+|||+|||+|.++..|++.-...-.|.++|.+ +    ++..+.+| ++..+..|.... ....+ .+||+
T Consensus       128 l~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv  205 (293)
T PTZ00146        128 IPIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV  205 (293)
T ss_pred             eccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence            445554  599999999999999998752101135666766 3    56776665 444455553211 12234 78999


Q ss_pred             eeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          286 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       286 Vh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |++....     +.....++.|+.|+|||||+|+|.
T Consensus       206 V~~Dva~-----pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        206 IFADVAQ-----PDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             EEEeCCC-----cchHHHHHHHHHHhccCCCEEEEE
Confidence            9988642     223445778999999999999994

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.87  E-value=2.9e-09  Score=94.56  Aligned_cols=71  Identities=23%  Similarity=0.260  Sum_probs=56.4

Q ss_pred             ecCCc-chHHHHHhcCc---------eeeeccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEE
Q 017983          250 PIDAP-DTLSIIFDRGL---------IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYV  318 (363)
Q Consensus       250 ~~d~s-~~L~~a~~Rgl---------~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~l  318 (363)
                      ++|.| +||++|.+|.-         +..+...++ .+||+ ++||+|++.++++++.   +...+|+|++|+|||||++
T Consensus         2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l   77 (160)
T PLN02232          2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAI-DLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRV   77 (160)
T ss_pred             eEcCCHHHHHHHHHhhhcccccCCCceEEEEechh-hCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEE
Confidence            56888 89999866521         333443444 48999 8999999999999886   4578999999999999999


Q ss_pred             EEEcCH
Q 017983          319 LVQDTL  324 (363)
Q Consensus       319 ii~D~~  324 (363)
                      +|.|..
T Consensus        78 ~i~d~~   83 (160)
T PLN02232         78 SILDFN   83 (160)
T ss_pred             EEEECC
Confidence            998754

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.87  E-value=2.1e-09  Score=102.18  Aligned_cols=69  Identities=25%  Similarity=0.274  Sum_probs=58.4

Q ss_pred             CCCHHHHHHHHHcC----CC----ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFALERG----IP----AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A~erg----~p----~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      |++..|+..+.+|.    +.    +.....+|+.|||||++||+...+...-.|++ ..++|+|++|||||||+|.+-
T Consensus       137 Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th-~~k~l~EAYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  137 DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH-IQKALREAYRVLKPGGRFSCL  213 (296)
T ss_pred             eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC-HHHHHHHHHHhcCCCcEEEEE
Confidence            88889988877764    32    33445579999999999999999998889985 779999999999999999875

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.86  E-value=5.8e-09  Score=96.92  Aligned_cols=98  Identities=19%  Similarity=0.315  Sum_probs=71.8

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeeecccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      +..+|||+|||+|.++..+.+.+.   .++.+|.+ +++..+.++    +. +.......+.....+ ++||+|+++.++
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l  124 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML  124 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence            346899999999999999987753   46777877 777777654    22 112211111222234 899999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +|..+   ...+|.++.|+|+|||.+++.+.
T Consensus       125 ~~~~~---~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        125 EHVPD---PASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hccCC---HHHHHHHHHHHcCCCcEEEEEec
Confidence            98764   57799999999999999999853

>PRK14968 putative methyltransferase; Provisional

Probab=98.85  E-value=3e-08  Score=88.25  Aligned_cols=117  Identities=17%  Similarity=0.218  Sum_probs=78.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----C-----ceeeeccccccCCCCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G-----LIGMYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----g-----l~~~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      ..+|||+|||+|.++..|+..+   .++.++|.+ +++..+.++    +     ......|+   ..+++ ++||+|+++
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~d~vi~n   97 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL---FEPFRGDKFDVILFN   97 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc---cccccccCceEEEEC
Confidence            4589999999999999998874   356778887 787766433    2     22223332   23456 789999987


Q ss_pred             ccccccc------------------ccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCceeee
Q 017983          290 FLLSDVT------------------QRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       290 ~~l~~~~------------------~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~~  343 (363)
                      ..+.+..                  ....+..++.++.|+|||||.+++.... .....+.+++....|+...
T Consensus        98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~  170 (188)
T PRK14968         98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV  170 (188)
T ss_pred             CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence            5443210                  0112466899999999999998876432 2345677777777776543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.84  E-value=1.3e-08  Score=94.85  Aligned_cols=94  Identities=19%  Similarity=0.127  Sum_probs=68.0

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh-cCc-----------------ee-eeccccccCCCC-C
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD-RGL-----------------IG-MYHDWCESFNTY-P  280 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~-Rgl-----------------~~-~~~d~~e~~lpf-p  280 (363)
                      .+|||+|||.|.-+.+|+++|.   +|+++|.| ..++.+.. .|+                 +. ...|..+  ++. .
T Consensus        36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~~~  110 (213)
T TIGR03840        36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA--LTAAD  110 (213)
T ss_pred             CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC--CCccc
Confidence            5999999999999999999875   46788888 66765432 332                 11 2233211  222 2


Q ss_pred             -CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          281 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       281 -~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                       .+||+|.-..+|+|++ +.....++..|.|.|||||++++.
T Consensus       111 ~~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       111 LGPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             CCCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence             6799999999999985 345678999999999999975543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.84  E-value=1.4e-08  Score=94.97  Aligned_cols=95  Identities=14%  Similarity=0.068  Sum_probs=68.3

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH-HhcCceee--------------eccccccCCCC---C-C
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII-FDRGLIGM--------------YHDWCESFNTY---P-R  281 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a-~~Rgl~~~--------------~~d~~e~~lpf---p-~  281 (363)
                      .+|||+|||.|.-+.+|+++|..   |+++|.+ ..++.+ .++|+...              +.-++.....+   . .
T Consensus        39 ~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         39 SRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            59999999999999999998754   6788888 666654 34444110              00011122222   3 6


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEE
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV  320 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii  320 (363)
                      +||+|.-+.+|+|++ ......++..|.++|||||++++
T Consensus       116 ~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        116 DVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence            899999999999986 34568899999999999997444

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.81  E-value=7.2e-09  Score=97.60  Aligned_cols=84  Identities=18%  Similarity=0.283  Sum_probs=67.9

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCCh
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDD   85 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~   85 (363)
                      -|.++.+++.|+++.....+.+.+.+.+||++++||+|+|+.++ ||..+...+|.|+.|+|||||.|+++.+. ....+
T Consensus        70 ~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~-~~~~~  147 (251)
T PRK10258         70 LDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTLV-QGSLP  147 (251)
T ss_pred             EECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeCC-CCchH
Confidence            48899999999998755556677899999999999999998765 67767788999999999999999999763 23455


Q ss_pred             hhHHHH
Q 017983           86 RHRSVW   91 (363)
Q Consensus        86 e~~~~~   91 (363)
                      |....|
T Consensus       148 el~~~~  153 (251)
T PRK10258        148 ELHQAW  153 (251)
T ss_pred             HHHHHH
Confidence            544333

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.80  E-value=1.3e-08  Score=95.21  Aligned_cols=119  Identities=15%  Similarity=0.073  Sum_probs=83.1

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCcee-eeccccccCCCCC-CCcceeeec
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG-MYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~-~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      .|++..+..+-|||||||+|--+..|.+.+-   -.+++|.| .||++|.+|-+.+ .++.....-+||+ +|||.|++-
T Consensus        43 LLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISI  119 (270)
T KOG1541|consen   43 LLALPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISI  119 (270)
T ss_pred             HhhCCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEe
Confidence            4556655678999999999999999988762   25688999 8999999876532 2222223469999 999999987


Q ss_pred             cccccc-------ccc-CCHHHHHHHHhHhccCCeEEEEEc---CHHHHHHHHHHH
Q 017983          290 FLLSDV-------TQR-CDIADVAVEMDRILRPGGYVLVQD---TLEMINKLKPVL  334 (363)
Q Consensus       290 ~~l~~~-------~~~-~~~~~~L~Em~RVLRPGG~lii~D---~~~~~~~i~~l~  334 (363)
                      .++.-+       +++ ..+..++.-++.+|++|+..++.=   ..+.++.|..-|
T Consensus       120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a  175 (270)
T KOG1541|consen  120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQA  175 (270)
T ss_pred             eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHH
Confidence            665411       111 123456777999999999999973   344444554444

>PRK14967 putative methyltransferase; Provisional

Probab=98.80  E-value=4.4e-08  Score=91.20  Aligned_cols=116  Identities=18%  Similarity=0.288  Sum_probs=73.5

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeee-ccccccCCCCC-CCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMY-HDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~-~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      .+|||+|||+|.++..++..+.  ..++++|.+ .++..+.++    ++ +.++ .|+.   ..++ ++||+|+++--+.
T Consensus        38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~---~~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWA---RAVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchh---hhccCCCeeEEEECCCCC
Confidence            5999999999999999887653  257788888 778766553    32 2222 2321   2356 8999999974322


Q ss_pred             cccc------------------cCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCceee
Q 017983          294 DVTQ------------------RCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       294 ~~~~------------------~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~  342 (363)
                      +-..                  ...++.++.++.|+|||||.+++.... .....+.++++.-.+...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~  180 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE  180 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence            1110                  001466889999999999999985322 123344455555555433

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.80  E-value=2.1e-08  Score=77.66  Aligned_cols=95  Identities=24%  Similarity=0.366  Sum_probs=66.2

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHH---hcCc---eeeeccccccCCCCC-CCcceeeecccccc
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF---DRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~---~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      +|||+|||+|.++..++...  ...+...|.+ +.+..+.   +.+.   +..++.......+.+ .+||+|++..++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence            58999999999998888732  2356677776 5555554   1111   233332223323334 89999999999887


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +  ......++..+.+.|||||.+++.
T Consensus        79 ~--~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          79 L--VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            4  235678999999999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.80  E-value=6.3e-09  Score=98.19  Aligned_cols=113  Identities=19%  Similarity=0.191  Sum_probs=75.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCcee-------eeccccccCCCCCCCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG-------MYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~-------~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      -|.++|+|||+|--+..++++.   -+|+++|.+ .||++|.+.-.+.       +..+-....+.=++|.|+|+|+.++
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV  110 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence            3689999999994444445542   257888998 8999887764321       2222111111114999999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCe-EEEE---EcCHHHHHHHHHHHHhCCce
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGG-YVLV---QDTLEMINKLKPVLHSLQWS  340 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG-~lii---~D~~~~~~~i~~l~~~l~W~  340 (363)
                      |-    ++++.++.++.|||||.| .+.+   .|..-+..++..+..+++|+
T Consensus       111 HW----Fdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~  158 (261)
T KOG3010|consen  111 HW----FDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS  158 (261)
T ss_pred             Hh----hchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence            84    457899999999999977 4333   34333455666666666665

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.80  E-value=2e-08  Score=98.03  Aligned_cols=111  Identities=17%  Similarity=0.171  Sum_probs=73.4

Q ss_pred             cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc--chHHHHHhcCce------eee
Q 017983          198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP--DTLSIIFDRGLI------GMY  269 (363)
Q Consensus       198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s--~~L~~a~~Rgl~------~~~  269 (363)
                      .+-+|.....+  +.     +-..++|||||||.|.++-.++..+..  .|+++|.+  -.+++..-+.++      ..+
T Consensus       100 Sd~KW~rl~p~--l~-----~L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l  170 (315)
T PF08003_consen  100 SDWKWDRLLPH--LP-----DLKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL  170 (315)
T ss_pred             ccchHHHHHhh--hC-----CcCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEc
Confidence            34567665543  32     224579999999999999999887753  24555544  122322211111      111


Q ss_pred             ccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          270 HDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       270 ~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      -..-| .+|..++||+|+|-.||=|..+   +...|.++...|||||.+++-
T Consensus       171 plgvE-~Lp~~~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLE  218 (315)
T PF08003_consen  171 PLGVE-DLPNLGAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLE  218 (315)
T ss_pred             Ccchh-hccccCCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEE
Confidence            01112 3555699999999999998654   578999999999999999975

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.79  E-value=2.6e-08  Score=92.90  Aligned_cols=133  Identities=17%  Similarity=0.239  Sum_probs=98.7

Q ss_pred             cCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc-----eeeeccccccCCCCC-CCcceee
Q 017983          216 INWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       216 i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      +.....++|.|+|||+|.....|+.+ +..  .+.++|.| +||+.|..|..     .+.+++||      | ..+|+++
T Consensus        26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A--~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~------p~~~~dllf   97 (257)
T COG4106          26 VPLERPRRVVDLGCGPGNSTELLARRWPDA--VITGIDSSPAMLAKAAQRLPDATFEEADLRTWK------PEQPTDLLF   97 (257)
T ss_pred             CCccccceeeecCCCCCHHHHHHHHhCCCC--eEeeccCCHHHHHHHHHhCCCCceecccHhhcC------CCCccchhh
Confidence            34456789999999999999999886 322  37899999 99999999976     24456664      5 8899999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcC--HH--HHHHHHHHHHhCCceeeee-------------------
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT--LE--MINKLKPVLHSLQWSTNIY-------------------  344 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~--~~--~~~~i~~l~~~l~W~~~~~-------------------  344 (363)
                      ++-+|+-+++   -..+|.-+---|.|||.+.+.-.  .+  .-..|.+.++..-|.....                   
T Consensus        98 aNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL  174 (257)
T COG4106          98 ANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL  174 (257)
T ss_pred             hhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence            9999997764   35688888889999999999722  11  2245667776666654332                   


Q ss_pred             ---cceEEEEEeccCCCC
Q 017983          345 ---HDQFLVGKKGFWRPT  359 (363)
Q Consensus       345 ---~~~~li~~K~~w~~~  359 (363)
                         ..++=||.+.|-++-
T Consensus       175 a~~~~rvDiW~T~Y~h~l  192 (257)
T COG4106         175 APLACRVDIWHTTYYHQL  192 (257)
T ss_pred             CcccceeeeeeeeccccC
Confidence               466778888887653

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.77  E-value=2.7e-08  Score=92.12  Aligned_cols=97  Identities=19%  Similarity=0.119  Sum_probs=63.7

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcc
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYD  284 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFD  284 (363)
                      .+.+..  ..+|||+|||+|.+++.|++.......|+++|.+ ++++.|.++    |+  +.+.+..... .... ..||
T Consensus        72 ~l~~~~--~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~-~~~~~~~fD  148 (215)
T TIGR00080        72 LLELKP--GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ-GWEPLAPYD  148 (215)
T ss_pred             HhCCCC--cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc-CCcccCCCC
Confidence            344443  4599999999999999988752221236677877 778776654    33  2233322222 1223 7899


Q ss_pred             eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +|++.....+         +..++.+.|+|||++++.
T Consensus       149 ~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       149 RIYVTAAGPK---------IPEALIDQLKEGGILVMP  176 (215)
T ss_pred             EEEEcCCccc---------ccHHHHHhcCcCcEEEEE
Confidence            9998765543         345688999999999885

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.77  E-value=2.8e-08  Score=100.30  Aligned_cols=114  Identities=11%  Similarity=0.125  Sum_probs=74.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHH----hcCc--eeeeccccccC-CCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF----DRGL--IGMYHDWCESF-NTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~----~Rgl--~~~~~d~~e~~-lpfp-~sFDlVh~~~~  291 (363)
                      ...+||+|||+|.++..|+...- -.+++++|.+ .++..+.    .+|+  +.++...+... .+++ ++||.|++.+-
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP  201 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP  201 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence            35899999999999999997531 1257788887 6665544    3344  33333322221 2578 99999998644


Q ss_pred             cccccccC----CHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHh
Q 017983          292 LSDVTQRC----DIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHS  336 (363)
Q Consensus       292 l~~~~~~~----~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~  336 (363)
                      .. |+...    ....+|.|+.|+|||||.+.+. |..++...+.+....
T Consensus       202 dP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~  250 (390)
T PRK14121        202 VP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLK  250 (390)
T ss_pred             CC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHh
Confidence            32 22111    1257999999999999999886 555555555555433

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.74  E-value=4.8e-08  Score=98.53  Aligned_cols=109  Identities=13%  Similarity=0.114  Sum_probs=72.9

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----C-----ceeeeccccccCCCCC-CCcceeeecc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G-----LIGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----g-----l~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      .+|||+|||+|.++..++.+.. ...|+.+|.+ .+++.+.+.    +     .+.++.+.+.  ..++ .+||+|+|+-
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l--~~~~~~~fDlIlsNP  306 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL--SGVEPFRFNAVLCNP  306 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccc--ccCCCCCEEEEEECc
Confidence            5899999999999999987531 1247788888 778777643    1     1233333221  2345 6999999987


Q ss_pred             cccccc--ccCCHHHHHHHHhHhccCCeEEEEEc--CHHHHHHHHHH
Q 017983          291 LLSDVT--QRCDIADVAVEMDRILRPGGYVLVQD--TLEMINKLKPV  333 (363)
Q Consensus       291 ~l~~~~--~~~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i~~l  333 (363)
                      -|+...  ......+++.+..|+|||||.++|--  ...+...++++
T Consensus       307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~  353 (378)
T PRK15001        307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKI  353 (378)
T ss_pred             CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHH
Confidence            776432  11124678999999999999999873  23344445543

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.74  E-value=9.7e-08  Score=85.43  Aligned_cols=97  Identities=24%  Similarity=0.354  Sum_probs=64.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeec-cccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYH-DWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~-d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..++.+... ..|+.+|.+ ++++.+.+.    ++  +.+++ |+   .-+.+ ..||+|+|+-=
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~---~~~~~~~~fD~Iv~NPP  107 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDL---FEALPDGKFDLIVSNPP  107 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST---TTTCCTTCEEEEEE---
T ss_pred             CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccc---cccccccceeEEEEccc
Confidence            458999999999999999886433 237778888 677665442    22  33333 32   23455 99999999843


Q ss_pred             cccccc--cCCHHHHHHHHhHhccCCeEEEEE
Q 017983          292 LSDVTQ--RCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       292 l~~~~~--~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++.-.+  .....+++.+..+.|||||.+++-
T Consensus       108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv  139 (170)
T PF05175_consen  108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV  139 (170)
T ss_dssp             SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence            332111  112578999999999999998543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03438 probable methyltransferase

Probab=98.74  E-value=2e-08  Score=98.02  Aligned_cols=99  Identities=18%  Similarity=0.218  Sum_probs=69.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------c-e-eeeccccccCCCCCCCc-----cee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L-I-GMYHDWCESFNTYPRTY-----DLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------l-~-~~~~d~~e~~lpfp~sF-----DlV  286 (363)
                      ..+|||+|||+|.++..|++.......++++|.| +||+.+.++-      + + .+..|.. ..++++..+     .++
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~-~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFT-QPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEccc-chhhhhcccccCCeEEE
Confidence            3589999999999999998753212358899999 8998887761      2 1 2334432 224455222     344


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++...+.+++ +.+...+|+++.++|+|||.++|.
T Consensus       143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence            4456677764 445678999999999999999985

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.72  E-value=1.1e-07  Score=90.25  Aligned_cols=129  Identities=21%  Similarity=0.407  Sum_probs=82.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc---Cc---eeeec-cccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---GL---IGMYH-DWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R---gl---~~~~~-d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|+.... ...++++|.+ .+++.+.+.   +.   +.+++ |+   ..+++ ++||+|+++--
T Consensus       109 ~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP  184 (275)
T PRK09328        109 PLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP  184 (275)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence            45899999999999999987531 1257788888 788777664   11   22232 32   23455 89999998521


Q ss_pred             cc--------------ccc---------ccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCce-eeee---
Q 017983          292 LS--------------DVT---------QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS-TNIY---  344 (363)
Q Consensus       292 l~--------------~~~---------~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~-~~~~---  344 (363)
                      +.              |-+         .......++.++.++|||||++++.-....-..++.+.....+. +...   
T Consensus       185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~  264 (275)
T PRK09328        185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDL  264 (275)
T ss_pred             cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCC
Confidence            11              000         00113568889999999999999975545556677777766554 2222   


Q ss_pred             --cceEEEEEe
Q 017983          345 --HDQFLVGKK  353 (363)
Q Consensus       345 --~~~~li~~K  353 (363)
                        .+++++++|
T Consensus       265 ~~~~r~~~~~~  275 (275)
T PRK09328        265 AGRDRVVLGRR  275 (275)
T ss_pred             CCCceEEEEEC
Confidence              456666543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.70  E-value=6.3e-08  Score=90.36  Aligned_cols=116  Identities=19%  Similarity=0.358  Sum_probs=78.0

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      .+|||+|||+|.++..++.... ...++++|.+ .+++.+.+.    ++  +..++..+  ..+++ ++||+|+|+--+.
T Consensus        89 ~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~~fD~Vi~npPy~  165 (251)
T TIGR03534        89 LRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW--FEPLPGGKFDLIVSNPPYI  165 (251)
T ss_pred             CeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch--hccCcCCceeEEEECCCCC
Confidence            5899999999999999987521 1257788887 777766543    33  23333222  23566 8999999853222


Q ss_pred             c------cccc-----------------CCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCce
Q 017983          294 D------VTQR-----------------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS  340 (363)
Q Consensus       294 ~------~~~~-----------------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~  340 (363)
                      .      +...                 .....++.++.|+|||||.+++.........+.++++...++
T Consensus       166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~  235 (251)
T TIGR03534       166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFA  235 (251)
T ss_pred             chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCC
Confidence            1      1100                 012467899999999999999987665667788888777774

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.70  E-value=9.3e-08  Score=95.23  Aligned_cols=97  Identities=19%  Similarity=0.213  Sum_probs=68.4

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Ccee-eeccccccCCCC-CCCcceeeecccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG-MYHDWCESFNTY-PRTYDLLHSSFLLSD  294 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~~-~~~d~~e~~lpf-p~sFDlVh~~~~l~~  294 (363)
                      .+|||+|||+|.++..+++... ...|+.+|.+ .++..+.+.    ++.. ++..   ..+.. ++.||+|+|+--||+
T Consensus       198 g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~---D~~~~~~~~fDlIvsNPPFH~  273 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVFAS---NVFSDIKGRFDMIISNPPFHD  273 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEc---ccccccCCCccEEEECCCccC
Confidence            3799999999999999987632 1247788888 788766542    3321 2221   11233 489999999988875


Q ss_pred             ccc--cCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          295 VTQ--RCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       295 ~~~--~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ...  ....+.++.++.|.|||||.++|-.
T Consensus       274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             CccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            321  2235789999999999999998864

>PLN02244 tocopherol O-methyltransferase

Probab=98.70  E-value=2e-08  Score=99.59  Aligned_cols=71  Identities=24%  Similarity=0.276  Sum_probs=61.6

Q ss_pred             CCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.|++.|.++    |+  .+.+.+.++..+||++++||+|+|..+.+|+.+ ...++.|+.|+|||||+|+++..
T Consensus       148 D~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d-~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        148 TLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPD-KRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             ECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCC-HHHHHHHHHHHcCCCcEEEEEEe
Confidence            7899999988764    54  367777889999999999999999999988875 56899999999999999999865

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.69  E-value=5e-08  Score=92.19  Aligned_cols=126  Identities=15%  Similarity=0.252  Sum_probs=86.6

Q ss_pred             hhccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCC-eEEEEeecCCc-chHHHHHhcCc-----
Q 017983          193 EAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPL-WVMNVVPIDAP-DTLSIIFDRGL-----  265 (363)
Q Consensus       193 e~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v-~v~~v~~~d~s-~~L~~a~~Rgl-----  265 (363)
                      +.| -.+++|-.+--..|..   ....+..+||.+|||.|...--|.+... .-+.|.+.|.+ +.++...+.--     
T Consensus        48 ~rF-fkdR~wL~~Efpel~~---~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~  123 (264)
T KOG2361|consen   48 NRF-FKDRNWLLREFPELLP---VDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESR  123 (264)
T ss_pred             ccc-cchhHHHHHhhHHhhC---ccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhh
Confidence            344 3456665544322332   2223334899999999987777765321 12456777888 77776665532     


Q ss_pred             -eeeeccccccCCCC--C-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          266 -IGMYHDWCESFNTY--P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       266 -~~~~~d~~e~~lpf--p-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                       ...+.|.+.+.+..  + +++|+|++-++|+-++ ++.+..++..+.|+|||||.++++|-
T Consensus       124 ~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~-pek~~~a~~nl~~llKPGG~llfrDY  184 (264)
T KOG2361|consen  124 VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDY  184 (264)
T ss_pred             hcccceeccchhccCCCCcCccceEEEEEEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeec
Confidence             34556666555443  3 9999999999999885 45788999999999999999999984

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.69  E-value=4.8e-08  Score=90.63  Aligned_cols=98  Identities=15%  Similarity=0.099  Sum_probs=64.4

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcc
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYD  284 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFD  284 (363)
                      .+.+.+  ..+|||+|||+|.+++.|+........|+++|.+ ++++.+.++    |+  +.+.+..+.. .+++ ..||
T Consensus        71 ~l~~~~--g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~-~~~~~~~fD  147 (212)
T PRK13942         71 LLDLKE--GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL-GYEENAPYD  147 (212)
T ss_pred             HcCCCC--cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-CCCcCCCcC
Confidence            344443  4699999999999998887642111246677877 788777665    22  3333322221 2334 8999


Q ss_pred             eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +|++...++++         ..++.+.|||||.+++--
T Consensus       148 ~I~~~~~~~~~---------~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        148 RIYVTAAGPDI---------PKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             EEEECCCcccc---------hHHHHHhhCCCcEEEEEE
Confidence            99998766543         346777999999998853

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.68  E-value=1.6e-07  Score=90.79  Aligned_cols=128  Identities=16%  Similarity=0.244  Sum_probs=85.5

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCCCC-CCcceeeec--
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTYP-RTYDLLHSS--  289 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lpfp-~sFDlVh~~--  289 (363)
                      .+|||+|||+|.++..|+.... ...++++|.+ +++..+.+.    ++   +.++ .|+.   .+++ +.||+|+++  
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~---~~~~~~~fDlIvsNPP  191 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF---EPLAGQKIDIIVSNPP  191 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh---ccCcCCCccEEEECCC
Confidence            5899999999999999987421 1257788888 788777664    22   2223 3432   2456 589999985  


Q ss_pred             -----------ccccccccc---------CCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHH-hCCcee-eee---
Q 017983          290 -----------FLLSDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLH-SLQWST-NIY---  344 (363)
Q Consensus       290 -----------~~l~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~-~l~W~~-~~~---  344 (363)
                                 .++.|.+..         ..+..++.+..++|+|||++++--....-..+.++.. ...|.. ...   
T Consensus       192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~  271 (284)
T TIGR00536       192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL  271 (284)
T ss_pred             CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence                       122222210         1256789999999999999998776666677777776 456642 333   


Q ss_pred             --cceEEEEEe
Q 017983          345 --HDQFLVGKK  353 (363)
Q Consensus       345 --~~~~li~~K  353 (363)
                        .++++++++
T Consensus       272 ~g~~R~~~~~~  282 (284)
T TIGR00536       272 NGKERVVLGFY  282 (284)
T ss_pred             CCCceEEEEEe
Confidence              567777654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=1.9e-07  Score=91.22  Aligned_cols=139  Identities=18%  Similarity=0.263  Sum_probs=86.1

Q ss_pred             hccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceee
Q 017983          194 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGM  268 (363)
Q Consensus       194 ~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~  268 (363)
                      .|-..++-=-..|.. .++.+..   +.++|||+|||+|-++.+.++.|+.  .+++.|.- ..++++++.-    ....
T Consensus       140 AFGTG~HpTT~lcL~-~Le~~~~---~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~  213 (300)
T COG2264         140 AFGTGTHPTTSLCLE-ALEKLLK---KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELL  213 (300)
T ss_pred             ccCCCCChhHHHHHH-HHHHhhc---CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchh
Confidence            454444444444543 3433321   4579999999999999988887754  35666765 4565555532    2111


Q ss_pred             eccccccCCCCC--CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCceeeee
Q 017983          269 YHDWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       269 ~~d~~e~~lpfp--~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~  344 (363)
                      .+.-.-..+..+  ..||+|+|+- |-+.     +..+..++.|.|||||++++|--.. ..+.+.+...+-.|++.-.
T Consensus       214 ~~~~~~~~~~~~~~~~~DvIVANI-LA~v-----l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~  286 (300)
T COG2264         214 VQAKGFLLLEVPENGPFDVIVANI-LAEV-----LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV  286 (300)
T ss_pred             hhcccccchhhcccCcccEEEehh-hHHH-----HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence            111111124456  5999999984 3322     4568899999999999999995433 3456666666667765444

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.66  E-value=7.8e-08  Score=94.82  Aligned_cols=113  Identities=12%  Similarity=0.055  Sum_probs=75.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||.|||+|+++..++..+.   .++++|.+ .|+..+...    |+  +.++...+. .+|++ ++||+|+++--+
T Consensus       183 g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPy  258 (329)
T TIGR01177       183 GDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPY  258 (329)
T ss_pred             cCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCC
Confidence            45899999999999877766543   46788888 787765443    33  223332233 47887 999999996211


Q ss_pred             c---ccc---ccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCc
Q 017983          293 S---DVT---QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW  339 (363)
Q Consensus       293 ~---~~~---~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W  339 (363)
                      .   ...   ......++|.|+.|+|||||++++.-...  ..++++++.-.|
T Consensus       259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~  309 (329)
T TIGR01177       259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR  309 (329)
T ss_pred             cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence            1   000   00124789999999999999988875443  255566777666

This family is found exclusively in the Archaea.

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.64  E-value=2.2e-07  Score=84.61  Aligned_cols=111  Identities=15%  Similarity=0.115  Sum_probs=69.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..++... ....|+++|.+ ++++.+.++    |+  +.++...+...++.. ..+|.++...  
T Consensus        41 ~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~--  117 (196)
T PRK07402         41 DSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG--  117 (196)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence            4589999999999998887531 11246778887 787766553    32  233332222222332 4567765431  


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCc
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQW  339 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W  339 (363)
                           ...+..++.++.|+|+|||++++.... +.+..+.+..+.+.+
T Consensus       118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~  160 (196)
T PRK07402        118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA  160 (196)
T ss_pred             -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence                 124678999999999999999988643 234455555555433

>PLN03075 nicotianamine synthase; Provisional

Probab=98.64  E-value=1.1e-07  Score=92.84  Aligned_cols=132  Identities=10%  Similarity=0.105  Sum_probs=80.8

Q ss_pred             CCceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhc-----Cc---ee-eeccccccCCCCC-CCcceee
Q 017983          220 SVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR-----GL---IG-MYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~R-----gl---~~-~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      ..++|+|||||.|.+.+.+.. .-.....++++|.+ ++++.|++.     |+   +. ..+|..+  ++-. +.||+|+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~--~~~~l~~FDlVF  200 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD--VTESLKEYDVVF  200 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh--cccccCCcCEEE
Confidence            468999999999876554432 11111236677877 666655542     32   22 2233221  2223 8899999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH---HHHHHHHHHHHhCCceeeee-------cceEEEEEecc
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL---EMINKLKPVLHSLQWSTNIY-------HDQFLVGKKGF  355 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~---~~~~~i~~l~~~l~W~~~~~-------~~~~li~~K~~  355 (363)
                      |. +++++. ..+...+|..+.|.|||||+++++-..   .++..+-....--.|+....       -+-+.|.+|.-
T Consensus       201 ~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~  276 (296)
T PLN03075        201 LA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG  276 (296)
T ss_pred             Ee-cccccc-cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence            99 888873 346789999999999999999998531   11111111111116665544       35578888865

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.63  E-value=3.3e-07  Score=93.35  Aligned_cols=131  Identities=18%  Similarity=0.170  Sum_probs=84.9

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeee-ccccccCCCCCCCcceeeeccccc-
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMY-HDWCESFNTYPRTYDLLHSSFLLS-  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~-~d~~e~~lpfp~sFDlVh~~~~l~-  293 (363)
                      .+|||+|||+|.++..|+.... ...++++|.+ .|++.+.+.    +. +.++ .|+.+..+|-.++||+|+|+-=.. 
T Consensus       253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~  331 (423)
T PRK14966        253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE  331 (423)
T ss_pred             CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence            4899999999999998875321 1247788988 888877664    22 2223 343222122226899999953110 


Q ss_pred             ------------ccc------ccC---CHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee-e-----cc
Q 017983          294 ------------DVT------QRC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI-Y-----HD  346 (363)
Q Consensus       294 ------------~~~------~~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~-~-----~~  346 (363)
                                  |-+      ..+   -+..++.+..+.|+|||++++--..+.-+.++++++...|+... .     .+
T Consensus       332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~d  411 (423)
T PRK14966        332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLD  411 (423)
T ss_pred             cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCCc
Confidence                        000      001   13467788889999999998866656677888888887776432 2     57


Q ss_pred             eEEEEEe
Q 017983          347 QFLVGKK  353 (363)
Q Consensus       347 ~~li~~K  353 (363)
                      ++++.++
T Consensus       412 R~v~~~~  418 (423)
T PRK14966        412 RVTLGKY  418 (423)
T ss_pred             EEEEEEE
Confidence            7887764

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.62  E-value=5.8e-08  Score=90.29  Aligned_cols=106  Identities=14%  Similarity=0.198  Sum_probs=61.4

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCCC-CCcceeeecccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~  298 (363)
                      .-.|-|+|||.+.+|..+.+. .|.-.++++...          .   +..... +.+|.+ ++.|++++...|..    
T Consensus        73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~----------~---Vtacdi-a~vPL~~~svDv~VfcLSLMG----  134 (219)
T PF05148_consen   73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNP----------R---VTACDI-ANVPLEDESVDVAVFCLSLMG----  134 (219)
T ss_dssp             TS-EEEES-TT-HHHHH--S---EEEEESS-SST----------T---EEES-T-TS-S--TT-EEEEEEES---S----
T ss_pred             CEEEEECCCchHHHHHhcccCceEEEeeccCCCC----------C---EEEecC-ccCcCCCCceeEEEEEhhhhC----
Confidence            358999999999999887542 233333333321          1   122222 368999 99999887655542    


Q ss_pred             CCHHHHHHHHhHhccCCeEEEEEcCHHH---HHHHHHHHHhCCceeeee
Q 017983          299 CDIADVAVEMDRILRPGGYVLVQDTLEM---INKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPGG~lii~D~~~~---~~~i~~l~~~l~W~~~~~  344 (363)
                      -+..++|.|..|||||||.+.|.+...-   ++..-+..+++..+....
T Consensus       135 Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~  183 (219)
T PF05148_consen  135 TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSK  183 (219)
T ss_dssp             S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEE
T ss_pred             CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEec
Confidence            3578899999999999999999986543   334445567777777665

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.62  E-value=1.5e-07  Score=92.11  Aligned_cols=146  Identities=19%  Similarity=0.244  Sum_probs=82.6

Q ss_pred             hccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh----cCceee
Q 017983          194 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLIGM  268 (363)
Q Consensus       194 ~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~----Rgl~~~  268 (363)
                      .|-..++---+.|.. ++..+. .  +..+|||+|||+|-++.+-++.|+.  .|+++|.. ..++.+.+    .|+...
T Consensus       139 AFGTG~H~TT~lcl~-~l~~~~-~--~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~  212 (295)
T PF06325_consen  139 AFGTGHHPTTRLCLE-LLEKYV-K--PGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDR  212 (295)
T ss_dssp             SS-SSHCHHHHHHHH-HHHHHS-S--TTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTC
T ss_pred             cccCCCCHHHHHHHH-HHHHhc-c--CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCee
Confidence            566666655555654 554432 2  2359999999999887777766643  35556655 34444333    343111


Q ss_pred             eccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCceeeee--
Q 017983          269 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTNIY--  344 (363)
Q Consensus       269 ~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~~~--  344 (363)
                      +.-  .....++ ..||+|+|+-...-      +..++.++.+.|+|||++++|-.. +..+.|.+..+. .|+..-.  
T Consensus       213 ~~v--~~~~~~~~~~~dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~  283 (295)
T PF06325_consen  213 IEV--SLSEDLVEGKFDLVVANILADV------LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEERE  283 (295)
T ss_dssp             EEE--SCTSCTCCS-EEEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEE
T ss_pred             EEE--EEecccccccCCEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEE
Confidence            110  0123455 99999998844432      456888999999999999998432 233455555555 6655433  


Q ss_pred             cce--EEEEEec
Q 017983          345 HDQ--FLVGKKG  354 (363)
Q Consensus       345 ~~~--~li~~K~  354 (363)
                      ++.  -++++|+
T Consensus       284 ~~~W~~l~~~Kk  295 (295)
T PF06325_consen  284 EGEWVALVFKKK  295 (295)
T ss_dssp             ETTEEEEEEEE-
T ss_pred             ECCEEEEEEEeC
Confidence            333  2445553

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.60  E-value=2.2e-07  Score=88.64  Aligned_cols=122  Identities=16%  Similarity=0.262  Sum_probs=86.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-CC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-YP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-fp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|..+..|+.+--. ..+++++.. .+.+.|.+-    ++   +.++++.-....+ .+ .+||+|+|+=
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP  123 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP  123 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence            579999999999999999887211 235666666 444444332    11   4555544333333 34 6799999971


Q ss_pred             ---------------ccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983          291 ---------------LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       291 ---------------~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~  343 (363)
                                     ...|..-.+++++.++=..++|||||++.+--..+.+.+|-+++++++|....
T Consensus       124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~  191 (248)
T COG4123         124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR  191 (248)
T ss_pred             CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence                           11122334678999999999999999999999999999999999999998654

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.59  E-value=2.8e-07  Score=89.43  Aligned_cols=115  Identities=21%  Similarity=0.270  Sum_probs=74.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeec--
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSS--  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~--  289 (363)
                      ..+|||+|||+|.++..|+.... ...++++|.+ .+++.|.+.    |+   +.++...+  ..+++ ++||+|+++  
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~~~~~~~~fD~Iv~NPP  198 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--FAALPGRKYDLIVSNPP  198 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hhccCCCCccEEEECCC
Confidence            35899999999999999987521 1247788988 788777654    33   23333222  12456 789999985  


Q ss_pred             ----ccc-------cccccc---------CCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCc
Q 017983          290 ----FLL-------SDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW  339 (363)
Q Consensus       290 ----~~l-------~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W  339 (363)
                          ..+       .|.+..         .....++.++.++|+|||++++--..+. ..++++.....|
T Consensus       199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~  267 (284)
T TIGR03533       199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPF  267 (284)
T ss_pred             CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCC
Confidence                111       111100         1135788999999999999988654433 677777765433

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.58  E-value=1.8e-07  Score=92.24  Aligned_cols=94  Identities=13%  Similarity=0.076  Sum_probs=64.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCcee-------eeccccccCCCC-CCCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG-------MYHDWCESFNTY-PRTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~-------~~~d~~e~~lpf-p~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ +|++.+.++....       ....+....++. +++||+|+|..+
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v  221 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV  221 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence            35999999999999999998764   57888999 8999888873210       000111111332 489999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEE
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVL  319 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~li  319 (363)
                      ++|+++. ....++..+.++ .+||.++
T Consensus       222 L~H~p~~-~~~~ll~~l~~l-~~g~liI  247 (315)
T PLN02585        222 LIHYPQD-KADGMIAHLASL-AEKRLII  247 (315)
T ss_pred             EEecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence            9998753 344566677654 5565544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.58  E-value=2.6e-07  Score=85.04  Aligned_cols=89  Identities=17%  Similarity=0.198  Sum_probs=61.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC--CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP--RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp--~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|+....   .++.+|.+ ++++.+.++    |+  +.+.+....  .+++  ++||+|++...
T Consensus        79 ~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD~I~~~~~  153 (212)
T PRK00312         79 GDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGW--KGWPAYAPFDRILVTAA  153 (212)
T ss_pred             CCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcc--cCCCcCCCcCEEEEccC
Confidence            46999999999999888776532   46677777 777766654    32  233332222  2333  89999999876


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +.+         +..++.+.|+|||.+++.-.
T Consensus       154 ~~~---------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        154 APE---------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             chh---------hhHHHHHhcCCCcEEEEEEc
Confidence            554         34567899999999998643

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.55  E-value=5e-07  Score=88.69  Aligned_cols=112  Identities=20%  Similarity=0.209  Sum_probs=72.4

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecc--
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSF--  290 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~--  290 (363)
                      .+|||+|||+|.++.+|+.... ...|+++|.+ .+++.|.+.    |+   +.+++...  ..+++ ++||+|+++-  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~--~~~l~~~~fDlIvsNPPy  211 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL--FAALPGRRYDLIVSNPPY  211 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch--hhhCCCCCccEEEECCCC
Confidence            5899999999999999987521 1357888988 788776654    32   33333211  12345 7899999861  


Q ss_pred             ----c-------ccccccc---------CCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhC
Q 017983          291 ----L-------LSDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSL  337 (363)
Q Consensus       291 ----~-------l~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l  337 (363)
                          .       +.|.+..         .....++.++.++|+|||++++--... ...+.++....
T Consensus       212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~  277 (307)
T PRK11805        212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV  277 (307)
T ss_pred             CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence                0       1121110         113578999999999999999854433 34566666543

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.55  E-value=7.5e-08  Score=79.48  Aligned_cols=98  Identities=17%  Similarity=0.265  Sum_probs=63.9

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCC-CCC-CCcceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFN-TYP-RTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~l-pfp-~sFDlVh~~~~  291 (363)
                      .+|||+|||+|.++.++++.+  ...+.++|.. ..++.++.+-    +   +.++........ +++ +.||+|+++--
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP   79 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP   79 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred             CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence            489999999999999988765  2356777877 5566555432    1   223322222222 467 99999999865


Q ss_pred             ccccc-----ccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          292 LSDVT-----QRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       292 l~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +....     .......++.++.|+|||||.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            55321     1112467899999999999999875

...

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.54  E-value=6.7e-08  Score=92.56  Aligned_cols=73  Identities=19%  Similarity=0.280  Sum_probs=61.6

Q ss_pred             CCCCHHHHHHHHHcCC---CceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGI---PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~---p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|.++..   .+.+...++..+||++++||+|++..+++|+.. +...+|+++.|+|||||+|+++.+
T Consensus        81 iD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098         81 VDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             EECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3789999999998732   355666777889999999999999888888863 567899999999999999999866

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.50  E-value=1.8e-07  Score=87.64  Aligned_cols=99  Identities=24%  Similarity=0.445  Sum_probs=71.2

Q ss_pred             CCCCCceEEEecccccHHHHHhhcC-C-CeEEEEeecCCcchHHHHHhcCceee-eccccccCCCCCCCcceeeeccccc
Q 017983          217 NWSSVRNVMDMNASYGGFAAALIDQ-P-LWVMNVVPIDAPDTLSIIFDRGLIGM-YHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       217 ~~~~~r~VLDvGCG~G~faa~L~~~-~-v~v~~v~~~d~s~~L~~a~~Rgl~~~-~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ...+.++|||||+|.|.++.++++. + ..   ++-.|.+..++.+.+..-+.. -+|.   +-|+|. +|+++.+++||
T Consensus        97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~---~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vLh  169 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHFAIALARAYPNLR---ATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVLH  169 (241)
T ss_dssp             TTTTSSEEEEET-TTSHHHHHHHHHSTTSE---EEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSGG
T ss_pred             cccCccEEEeccCcchHHHHHHHHHCCCCc---ceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehhhh
Confidence            4456789999999999999999873 2 32   344566655555555333333 3442   356778 99999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCC--eEEEEEcC
Q 017983          294 DVTQRCDIADVAVEMDRILRPG--GYVLVQDT  323 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPG--G~lii~D~  323 (363)
                      +|++. ....+|+.+.+.|+||  |+++|.|.
T Consensus       170 ~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  170 DWSDE-DCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             GS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             hcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence            99764 5678999999999999  99999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.50  E-value=2.3e-07  Score=92.07  Aligned_cols=120  Identities=18%  Similarity=0.275  Sum_probs=73.2

Q ss_pred             hhHHHHH-HHhhhhccccCCCCCceEEEecccccH-HHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------------
Q 017983          200 THWYALV-SDVYVGGLAINWSSVRNVMDMNASYGG-FAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------------  264 (363)
Q Consensus       200 ~~W~~~~-~~~y~~~l~i~~~~~r~VLDvGCG~G~-faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------------  264 (363)
                      ..|.+.+ ...|...+. ...+..+|||||||-|+ +..+... +  +-.++++|.+ ..++.|.+|.            
T Consensus        42 NNwvKs~LI~~~~~~~~-~~~~~~~VLDl~CGkGGDL~Kw~~~-~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~  117 (331)
T PF03291_consen   42 NNWVKSVLIQKYAKKVK-QNRPGLTVLDLCCGKGGDLQKWQKA-K--IKHYVGIDISEESIEEARERYKQLKKRNNSKQY  117 (331)
T ss_dssp             HHHHHHHHHHHHCHCCC-CTTTT-EEEEET-TTTTTHHHHHHT-T---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTS
T ss_pred             hHHHHHHHHHHHHHhhh-ccCCCCeEEEecCCCchhHHHHHhc-C--CCEEEEEeCCHHHHHHHHHHHHHhccccccccc
Confidence            5576644 233544222 11256799999999887 4444433 3  2347888888 7788888776            


Q ss_pred             ---c-eeeecccccc-----CCCCC-CCcceeeecccccccc-ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          265 ---L-IGMYHDWCES-----FNTYP-RTYDLLHSSFLLSDVT-QRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       265 ---l-~~~~~d~~e~-----~lpfp-~sFDlVh~~~~l~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                         . ...+...|..     .++.+ ..||+|-|-++||+.= +......+|.-+.+.|||||+||.+-.
T Consensus       118 ~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  118 RFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             EECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence               1 1122222321     12333 5999999999999742 333467799999999999999999854

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK05785 hypothetical protein; Provisional

Probab=98.50  E-value=1.1e-07  Score=89.23  Aligned_cols=69  Identities=20%  Similarity=0.201  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCe-EEEEEeC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGG-FFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG-~~~~s~~   78 (363)
                      -|.|+.+++.|.++.   ...+.+++.|||++++||+|+|+.+++|+. +...+|+|+.|||||.+ .+-++.|
T Consensus        80 vD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~-d~~~~l~e~~RvLkp~~~ile~~~p  149 (226)
T PRK05785         80 LDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD-NIEKVIAEFTRVSRKQVGFIAMGKP  149 (226)
T ss_pred             ECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-CHHHHHHHHHHHhcCceEEEEeCCC
Confidence            489999999999874   234667899999999999999999886655 57789999999999953 4444443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.48  E-value=8.2e-07  Score=90.68  Aligned_cols=102  Identities=15%  Similarity=0.202  Sum_probs=65.2

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cce-ee-eccccccCCCC--C-CCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-GM-YHDWCESFNTY--P-RTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~-~~-~~d~~e~~lpf--p-~sFDlVh~~  289 (363)
                      +..+|||+|||+|+.+..++..-- ...|+++|.+ +++..+.++    |+. .+ ..+......++  + ++||.|++.
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD  316 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD  316 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence            346999999999999988886421 1247788888 777665544    431 11 12111112333  5 889999952


Q ss_pred             ------ccccccccc------C-------CHHHHHHHHhHhccCCeEEEEEc
Q 017983          290 ------FLLSDVTQR------C-------DIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       290 ------~~l~~~~~~------~-------~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                            .++++.++-      .       .-..+|.++.|+|||||+++++.
T Consensus       317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                  344432210      0       02579999999999999999983

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.48  E-value=2.6e-07  Score=88.61  Aligned_cols=66  Identities=26%  Similarity=0.364  Sum_probs=56.9

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|+|+.+++.|.++...+.+.+.++..|||++++||+|++..+        ...+.|+.|+|||||+|++..|.
T Consensus       118 iD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--------~~~~~e~~rvLkpgG~li~~~p~  183 (272)
T PRK11088        118 LDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--------PCKAEELARVVKPGGIVITVTPG  183 (272)
T ss_pred             ECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC--------CCCHHHHHhhccCCCEEEEEeCC
Confidence            4999999999998876677788889999999999999998643        14679999999999999998773

>PRK04457 spermidine synthase; Provisional

Probab=98.44  E-value=1.5e-06  Score=83.50  Aligned_cols=100  Identities=7%  Similarity=0.080  Sum_probs=66.5

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-c------eeeeccccccCCC-CCCCcceeeecc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-L------IGMYHDWCESFNT-YPRTYDLLHSSF  290 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-l------~~~~~d~~e~~lp-fp~sFDlVh~~~  290 (363)
                      ..++|||+|||.|.++.+++.... ...++.+|.. ++++.|.+.- .      +.++...+..++. .+.+||+|++. 
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D-  143 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD-  143 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-
Confidence            357999999999999998876421 2346777876 7888887652 1      2233332222232 24789999986 


Q ss_pred             cccc--ccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          291 LLSD--VTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       291 ~l~~--~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      .+..  .+.......++.++.++|+|||.+++.
T Consensus       144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            3332  111112368999999999999999983

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.43  E-value=1.1e-06  Score=83.74  Aligned_cols=121  Identities=16%  Similarity=0.080  Sum_probs=78.3

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----CceeeeccccccCCC--CCCCcceeeeccccc-
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNT--YPRTYDLLHSSFLLS-  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~~~~~d~~e~~lp--fp~sFDlVh~~~~l~-  293 (363)
                      .+|||+|||+|.++..|+.... ...++++|.+ .+++.+.+.    |......|+. ..++  +.+.||+|+++-=.. 
T Consensus        88 ~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~-~~l~~~~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704        88 LVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLY-DALPTALRGRVDILAANAPYVP  165 (251)
T ss_pred             CEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeech-hhcchhcCCCEeEEEECCCCCC
Confidence            4899999999999998876411 1246778887 777766543    2211223322 2232  236799999862111 


Q ss_pred             -------------cccc------cC---CHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee
Q 017983          294 -------------DVTQ------RC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       294 -------------~~~~------~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                                   |.+.      ..   -+.+++....++|||||.+++.-..+....+..+++...|+..+.
T Consensus       166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~  238 (251)
T TIGR03704       166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVA  238 (251)
T ss_pred             chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceee
Confidence                         1000      00   134778888899999999999876666778888888777776554

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.43  E-value=1.3e-07  Score=93.63  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=61.3

Q ss_pred             CCCCHHHHHHHHHcC----C--CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERG----I--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg----~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.++++|+++.    .  .+.+...+++.+|+++++||+|+|..+++|+.+ +..+|.|+.|+|||||.++++..
T Consensus       159 ID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d-~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        159 VDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVAN-PAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             EeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCC-HHHHHHHHHHHcCCCcEEEEEEC
Confidence            388999999998762    1  355666678899999999999999999988775 67899999999999999999965

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.42  E-value=1.9e-07  Score=88.39  Aligned_cols=69  Identities=16%  Similarity=0.173  Sum_probs=57.4

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.+++.|+++++  .+...+++.++ ++++||+|+|+.+++|.. +...++.++.|+|||||+|++..+
T Consensus        59 vD~s~~~~~~a~~~~~--~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         59 LDSSPEMVAAARERGV--DARTGDVRDWK-PKPDTDVVVSNAALQWVP-EHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             EECCHHHHHHHHhcCC--cEEEcChhhCC-CCCCceEEEEehhhhhCC-CHHHHHHHHHHhCCCCcEEEEEcC
Confidence            4889999999999875  45556777775 678999999998876544 567899999999999999999866

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.42  E-value=1e-06  Score=92.09  Aligned_cols=116  Identities=16%  Similarity=0.352  Sum_probs=77.3

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCCCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      ..+|||+|||+|.++..|+.. +.  ..++++|.+ .+++.|.+.    |+   +.++ .|+   ..+++ ++||+|+|+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~~~~~~~fDlIvsN  213 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FENIEKQKFDFIVSN  213 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hhhCcCCCccEEEEC
Confidence            358999999999999888753 21  247788888 788877665    32   2222 232   12345 789999984


Q ss_pred             c--------------cccccc------ccC---CHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCcee
Q 017983          290 F--------------LLSDVT------QRC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST  341 (363)
Q Consensus       290 ~--------------~l~~~~------~~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~  341 (363)
                      -              +..|.+      ..+   .+..++.++.++|+|||.+++.-....-+.+.+++....|+.
T Consensus       214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~  288 (506)
T PRK01544        214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNI  288 (506)
T ss_pred             CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCc
Confidence            1              111111      011   134578899999999999998755556677888887777764

>PRK00811 spermidine synthase; Provisional

Probab=98.41  E-value=6.1e-07  Score=87.00  Aligned_cols=101  Identities=11%  Similarity=0.114  Sum_probs=67.2

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------c-----eeeeccccccCCCCC-CCccee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L-----IGMYHDWCESFNTYP-RTYDLL  286 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------l-----~~~~~d~~e~~lpfp-~sFDlV  286 (363)
                      ..++|||+|||.|+++.++++++ .+..|+.++.. ++++.+.+.-      .     +.++...+...+... ++||+|
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            45799999999999999998863 12256777777 6787776531      1     223333333345445 899999


Q ss_pred             eecccccccccc-CCHHHHHHHHhHhccCCeEEEEE
Q 017983          287 HSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       287 h~~~~l~~~~~~-~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++...-...+.. -.-+.++.++.|+|+|||.+++.
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            986432211110 01256789999999999999985

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.40  E-value=9.2e-07  Score=87.53  Aligned_cols=98  Identities=16%  Similarity=0.107  Sum_probs=62.9

Q ss_pred             hccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCc
Q 017983          212 GGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTY  283 (363)
Q Consensus       212 ~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sF  283 (363)
                      +.+.+++  ..+|||+|||+|.+++.|++.......|+++|.+ ++++.|.++    |+  +...+..+.. .+.+ ..|
T Consensus        74 ~~L~i~~--g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~-~~~~~~~f  150 (322)
T PRK13943         74 EWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY-GVPEFAPY  150 (322)
T ss_pred             HhcCCCC--CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh-cccccCCc
Confidence            3344443  3599999999999999988642111135677877 788776653    33  2222222222 2334 789


Q ss_pred             ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |+|++...+.+         ....+.++|||||.+++.
T Consensus       151 D~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        151 DVIFVTVGVDE---------VPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             cEEEECCchHH---------hHHHHHHhcCCCCEEEEE
Confidence            99999855543         334567899999998884

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.40  E-value=1.8e-06  Score=88.32  Aligned_cols=115  Identities=20%  Similarity=0.271  Sum_probs=70.4

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCC-CC-CCcceeee---
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNT-YP-RTYDLLHS---  288 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lp-fp-~sFDlVh~---  288 (363)
                      +..+|||+|||+|+.+..+++.... ..|+++|.+ +++..+.++    |+ +.++...+....+ ++ ++||.|++   
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P  322 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP  322 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence            3469999999999999998875311 247788888 777766554    32 2222222222122 45 78999994   


Q ss_pred             -cc--cccccc------ccCC-------HHHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHH
Q 017983          289 -SF--LLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH  335 (363)
Q Consensus       289 -~~--~l~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~  335 (363)
                       +.  .+.+-+      +..+       ..++|.+..++|||||+++++.-    .+....+..+++
T Consensus       323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~  389 (427)
T PRK10901        323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA  389 (427)
T ss_pred             CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH
Confidence             32  111100      1111       23689999999999999998752    333345555554

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.37  E-value=1.9e-06  Score=88.24  Aligned_cols=115  Identities=16%  Similarity=0.140  Sum_probs=71.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC----CC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT----YP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp----fp-~sFDlVh~  288 (363)
                      ..+|||+|||+|+.+..|+..--....|+++|.+ ++++.+.++    |+  +.++....+ .++    +. ++||.|++
T Consensus       253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~-~~~~~~~~~~~~fD~Vl~  331 (434)
T PRK14901        253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR-NLLELKPQWRGYFDRILL  331 (434)
T ss_pred             cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh-hcccccccccccCCEEEE
Confidence            4689999999999998887641111246778887 777666543    33  233322222 233    44 89999996


Q ss_pred             c------ccccccccc------CC-------HHHHHHHHhHhccCCeEEEEEc----CHHHHHHHHHHHHh
Q 017983          289 S------FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQD----TLEMINKLKPVLHS  336 (363)
Q Consensus       289 ~------~~l~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D----~~~~~~~i~~l~~~  336 (363)
                      .      .++++-++.      .+       ..++|.++.++|||||+++.++    ..+....|..+++.
T Consensus       332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~  402 (434)
T PRK14901        332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR  402 (434)
T ss_pred             eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence            3      234332210      01       2578999999999999999875    22445556666554

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.37  E-value=1.2e-06  Score=89.92  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=68.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeec---
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSS---  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~---  289 (363)
                      ..+|||+|||+|+.+..+++.-.....|+++|.+ ++++.+.++    |+  +.+....+.. ++ + ++||+|++.   
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~-~~-~~~~fD~Vl~D~Pc  328 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARS-FS-PEEQPDAILLDAPC  328 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccc-cc-cCCCCCEEEEcCCC
Confidence            4699999999999887776531011247788888 787766544    43  2222221221 22 4 889999952   


Q ss_pred             ---ccccccc------ccCC-------HHHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHHh
Q 017983          290 ---FLLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS  336 (363)
Q Consensus       290 ---~~l~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~  336 (363)
                         ..+..-+      ...+       ...+|.++.++|||||+++++.-    .+.-..|..++++
T Consensus       329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~  395 (445)
T PRK14904        329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR  395 (445)
T ss_pred             CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence               1221100      0011       13589999999999999999862    2234455555543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.36  E-value=1.3e-06  Score=89.49  Aligned_cols=115  Identities=18%  Similarity=0.176  Sum_probs=69.7

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC-CC-CCcceeeec-
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT-YP-RTYDLLHSS-  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp-fp-~sFDlVh~~-  289 (363)
                      +..+|||+|||+|+.+.+++..--....|+++|.+ ++++.+.++    |+  +.+.+.... .++ +. ++||.|++. 
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl~Da  315 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRILVDA  315 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEEECC
Confidence            34689999999999888877631011247788888 788766554    43  223322222 234 55 889999963 


Q ss_pred             --cccccccccC----------------CHHHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHH
Q 017983          290 --FLLSDVTQRC----------------DIADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH  335 (363)
Q Consensus       290 --~~l~~~~~~~----------------~~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~  335 (363)
                        ..+..+....                .-.++|.+..+.|||||.++.+.-    .+.-..|+.++.
T Consensus       316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~  383 (431)
T PRK14903        316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY  383 (431)
T ss_pred             CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence              1111111100                114679999999999999999842    233344555443

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=3.5e-06  Score=81.76  Aligned_cols=113  Identities=21%  Similarity=0.339  Sum_probs=79.0

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cce---eeeccccccCCCCCCCcceeeec-----
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMYHDWCESFNTYPRTYDLLHSS-----  289 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~---~~~~d~~e~~lpfp~sFDlVh~~-----  289 (363)
                      +|||+|||+|..|.+|+..... .+|+++|.+ ..+..|.+-    |+.   .+..||   +.+.++.||+|+|+     
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl---f~~~~~~fDlIVsNPPYip  188 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDL---FEPLRGKFDLIVSNPPYIP  188 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec---ccccCCceeEEEeCCCCCC
Confidence            8999999999999999986432 368899998 777665443    431   122233   34455799999986     


Q ss_pred             -c-------ccccc------cccC---CHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCc
Q 017983          290 -F-------LLSDV------TQRC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW  339 (363)
Q Consensus       290 -~-------~l~~~------~~~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W  339 (363)
                       .       ++.|-      ...+   -...++.+..++|+|||.+++.-.......++++.....+
T Consensus       189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~  255 (280)
T COG2890         189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF  255 (280)
T ss_pred             CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC
Confidence             1       00010      0111   2467889999999999999998776777888888888884

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.35  E-value=1.4e-06  Score=80.17  Aligned_cols=114  Identities=18%  Similarity=0.262  Sum_probs=69.7

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-ch----HHHHHhcCc--eeeeccccccCCC--CC-CCcceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DT----LSIIFDRGL--IGMYHDWCESFNT--YP-RTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~----L~~a~~Rgl--~~~~~d~~e~~lp--fp-~sFDlVh~~~~  291 (363)
                      ..+||+|||.|.|...++...-. .++++++.. +.    +..+..+++  +.++...+...+.  ++ +++|.|+..+-
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             CeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            38999999999999999874211 246666765 43    344555565  3344432322222  45 99999987633


Q ss_pred             cc-----cccccCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHh
Q 017983          292 LS-----DVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHS  336 (363)
Q Consensus       292 l~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~  336 (363)
                      =.     |...+---..+|.++.|+|+|||.+.+. |..++...+.+.+..
T Consensus        98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~  148 (195)
T PF02390_consen   98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE  148 (195)
T ss_dssp             ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred             CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            22     2111111267999999999999999886 555566666666655

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.34  E-value=9.4e-07  Score=84.51  Aligned_cols=104  Identities=16%  Similarity=0.226  Sum_probs=70.7

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCCC-CCcceeeeccccccccccCC
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCD  300 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~  300 (363)
                      -.|-|+|||-+-+|..- ...|..+++++....             +..... ...|.+ +|.|++++  ||+.+.  .+
T Consensus       182 ~vIaD~GCGEakiA~~~-~~kV~SfDL~a~~~~-------------V~~cDm-~~vPl~d~svDvaV~--CLSLMg--tn  242 (325)
T KOG3045|consen  182 IVIADFGCGEAKIASSE-RHKVHSFDLVAVNER-------------VIACDM-RNVPLEDESVDVAVF--CLSLMG--TN  242 (325)
T ss_pred             eEEEecccchhhhhhcc-ccceeeeeeecCCCc-------------eeeccc-cCCcCccCcccEEEe--eHhhhc--cc
Confidence            47999999999887522 235677777666532             111111 248999 99998776  455433  36


Q ss_pred             HHHHHHHHhHhccCCeEEEEEcCHHHHHH---HHHHHHhCCceeeee
Q 017983          301 IADVAVEMDRILRPGGYVLVQDTLEMINK---LKPVLHSLQWSTNIY  344 (363)
Q Consensus       301 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~---i~~l~~~l~W~~~~~  344 (363)
                      +.+++.|.+|||||||.++|.+...-...   ..+-...|.++....
T Consensus       243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~  289 (325)
T KOG3045|consen  243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK  289 (325)
T ss_pred             HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence            88999999999999999999876543323   344446777776554

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.34  E-value=6.7e-07  Score=85.31  Aligned_cols=73  Identities=21%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++    |++ +.+...+.+.+||++++||+|++..+++++. +...++.|+.|+|||||+|+++...
T Consensus       108 vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~-d~~~~l~~~~r~LkpGG~l~i~~~~  185 (272)
T PRK11873        108 VDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVINLSP-DKERVFKEAFRVLKPGGRFAISDVV  185 (272)
T ss_pred             ECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcccCCC-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            48899999999875    443 4455567888999999999999986665444 4567999999999999999998653

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.30  E-value=4e-06  Score=80.38  Aligned_cols=102  Identities=13%  Similarity=0.121  Sum_probs=63.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeec--
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSS--  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~--  289 (363)
                      +..+|||+|||+|+.+..|+..-.....|+++|.+ .+++.+.++    |+  +.+++..+. .++.. +.||.|++.  
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~-~~~~~~~~fD~Vl~D~P  149 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGR-VFGAAVPKFDAILLDAP  149 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHH-HhhhhccCCCEEEEcCC
Confidence            34689999999999998877631111146788888 777655443    33  233333222 23444 779999863  


Q ss_pred             ----cccccccc------cC-------CHHHHHHHHhHhccCCeEEEEEc
Q 017983          290 ----FLLSDVTQ------RC-------DIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       290 ----~~l~~~~~------~~-------~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                          .++.+-++      ..       .-.++|.++.+.|||||+++.+.
T Consensus       150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                12221110      00       11458999999999999999984

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.30  E-value=3.2e-06  Score=79.84  Aligned_cols=128  Identities=13%  Similarity=0.142  Sum_probs=75.3

Q ss_pred             CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-----CC-CCcc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-----YP-RTYD  284 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-----fp-~sFD  284 (363)
                      +.++|||+|||+|.-+.+|+.. +. ...++.+|.+ ++++.|.+.    |+   +.++...+...++     .+ .+||
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD  146 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence            3579999999999866666542 11 1135666766 566655443    33   2333322222222     23 6899


Q ss_pred             eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-----------------HHHHHHHHHHH----hCCceeee
Q 017983          285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------------EMINKLKPVLH----SLQWSTNI  343 (363)
Q Consensus       285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------------~~~~~i~~l~~----~l~W~~~~  343 (363)
                      +|++..-      +.....++.++.|.|||||.+++.+..                 .....|+++.+    .=++...+
T Consensus       147 ~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~  220 (234)
T PLN02781        147 FAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQ  220 (234)
T ss_pred             EEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEE
Confidence            9988622      234567899999999999998874310                 12234444433    33444433


Q ss_pred             e--cceEEEEEec
Q 017983          344 Y--HDQFLVGKKG  354 (363)
Q Consensus       344 ~--~~~~li~~K~  354 (363)
                      .  .+.+++++|.
T Consensus       221 lp~gdG~~i~~k~  233 (234)
T PLN02781        221 ISIGDGVTLCRRL  233 (234)
T ss_pred             EEeCCccEEEEEe
Confidence            3  6788888875

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.29  E-value=6.3e-07  Score=89.28  Aligned_cols=102  Identities=17%  Similarity=0.098  Sum_probs=73.3

Q ss_pred             CCCCHHHHHHHHHcC--CCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCC
Q 017983            6 KDEHEAQIQFALERG--IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRH   83 (363)
Q Consensus         6 ~D~~~~qvq~A~erg--~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~   83 (363)
                      -|.++.+++.|+++.  -.+.+...+++.+||++++||+|+|+.++++|.+ ...+|+|+.|+|||||++++..+..-..
T Consensus       143 VD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d-~~~~L~e~~rvLkPGG~LvIi~~~~p~~  221 (340)
T PLN02490        143 LDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD-PQRGIKEAYRVLKIGGKACLIGPVHPTF  221 (340)
T ss_pred             EECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC-HHHHHHHHHHhcCCCcEEEEEEecCcch
Confidence            378999999998873  2345566778889999999999999988877775 5689999999999999999876532111


Q ss_pred             Chh--hHH------HHHHHHHHHhhcceEEEEE
Q 017983           84 DDR--HRS------VWNAMVNLTESMCWKAVAR  108 (363)
Q Consensus        84 ~~e--~~~------~~~~~~~l~~~~cw~~~~~  108 (363)
                      |..  ...      ..+++.++++...++.+.-
T Consensus       222 ~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i  254 (340)
T PLN02490        222 WLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL  254 (340)
T ss_pred             hHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence            111  001      1245666777777776653

>PRK01581 speE spermidine synthase; Validated

Probab=98.29  E-value=1.6e-06  Score=87.07  Aligned_cols=103  Identities=14%  Similarity=0.188  Sum_probs=69.3

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc--------C-c----eeeeccccccCCCCC-CCc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR--------G-L----IGMYHDWCESFNTYP-RTY  283 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R--------g-l----~~~~~d~~e~~lpfp-~sF  283 (363)
                      .+.++||++|||+|+.++.+.+++ .+..|+.+|.. +++++|.+.        + +    +.+..+.+..++.-. +.|
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            345799999999999999888764 23357777887 789988851        1 1    222332233345444 889


Q ss_pred             ceeeecccccccc---ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          284 DLLHSSFLLSDVT---QRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       284 DlVh~~~~l~~~~---~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      |+|++... ....   ..-.-..++..+.|.|+|||.+++...
T Consensus       228 DVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        228 DVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             cEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            99998832 1110   001125688999999999999988754

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.28  E-value=2.7e-06  Score=87.26  Aligned_cols=116  Identities=17%  Similarity=0.236  Sum_probs=69.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCC-CCCCCcceeeecc--
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFN-TYPRTYDLLHSSF--  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~l-pfp~sFDlVh~~~--  290 (363)
                      ..+|||+|||+|+++..+++.-.....|+++|.+ ++++.+.++    |+  +.+++....... +++++||+|++.-  
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc  330 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC  330 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence            4689999999999998888641011246778887 677665543    33  233332222222 2458999999741  


Q ss_pred             ----ccccccc------cCC-------HHHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHHh
Q 017983          291 ----LLSDVTQ------RCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS  336 (363)
Q Consensus       291 ----~l~~~~~------~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~  336 (363)
                          .+.+-++      ..+       ...+|.+..|+|||||.++.+.-    .+.-..++.+++.
T Consensus       331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~  397 (444)
T PRK14902        331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE  397 (444)
T ss_pred             CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHh
Confidence                2221110      011       13589999999999999997642    1233455555544

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.27  E-value=5.7e-06  Score=65.55  Aligned_cols=94  Identities=26%  Similarity=0.390  Sum_probs=60.7

Q ss_pred             EEEecccccHH--HHHhhcCCCeEEEEeecCCc-chHHHHHhcC-------ceeeeccccccCCCCCC--Ccceeeeccc
Q 017983          224 VMDMNASYGGF--AAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------LIGMYHDWCESFNTYPR--TYDLLHSSFL  291 (363)
Q Consensus       224 VLDvGCG~G~f--aa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-------l~~~~~d~~e~~lpfp~--sFDlVh~~~~  291 (363)
                      +||+|||+|..  ...+...+..   ++++|.+ .++..+..+.       ......+.....+++..  +||++ +...
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAY---VVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL  127 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCce---EEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence            99999999984  4444433222   3446766 5666544433       11222332111367773  89999 6656


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      ..++..   ....+.++.|+|+|||.+++.+..
T Consensus       128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence            555433   678999999999999999998654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.26  E-value=2.2e-06  Score=80.93  Aligned_cols=94  Identities=20%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCCh
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDD   85 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~   85 (363)
                      -|.++.+++.|+++--.+.+...++..++ ++++||+|+|+.+++ |..+...++.++.|+|||||.|+++.+..   +.
T Consensus        61 vD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~-~~~d~~~~l~~~~~~LkpgG~~~~~~~~~---~~  135 (258)
T PRK01683         61 IDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQ-WLPDHLELFPRLVSLLAPGGVLAVQMPDN---LD  135 (258)
T ss_pred             EECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChh-hCCCHHHHHHHHHHhcCCCcEEEEECCCC---CC
Confidence            38899999999988544566667776665 557999999998874 55556789999999999999999987632   11


Q ss_pred             hhHHHHHHHHHHHhhcceEEE
Q 017983           86 RHRSVWNAMVNLTESMCWKAV  106 (363)
Q Consensus        86 e~~~~~~~~~~l~~~~cw~~~  106 (363)
                      +  ..+..+.+++...-|...
T Consensus       136 ~--~~~~~~~~~~~~~~w~~~  154 (258)
T PRK01683        136 E--PSHVLMREVAENGPWEQN  154 (258)
T ss_pred             C--HHHHHHHHHHccCchHHH
Confidence            1  112345555555555443

>PRK08317 hypothetical protein; Provisional

Probab=98.25  E-value=1.3e-06  Score=79.83  Aligned_cols=72  Identities=32%  Similarity=0.499  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    +..+.+...+.+.+||++++||+|++..+++|+.+ ...++.++.++|||||++++..+
T Consensus        50 ~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         50 IDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLED-PARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             EeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhccCC-HHHHHHHHHHHhcCCcEEEEEec
Confidence            37889999999887    23355566678889999999999999999888764 67899999999999999999865

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.25  E-value=1.2e-06  Score=80.46  Aligned_cols=72  Identities=24%  Similarity=0.295  Sum_probs=60.2

Q ss_pred             CCCCHHHHHHHHHcCCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|.++..+ +.+...+.+.+||++++||+|+|+.+++| ..+...+|.++.|+|||||+|+++.+
T Consensus        64 ~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~-~~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072        64 LDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQW-CDDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             EeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhh-ccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            47889999999888543 45566778889999999999999988754 44577899999999999999999876

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.25  E-value=8.1e-07  Score=85.32  Aligned_cols=73  Identities=19%  Similarity=0.308  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHHHc--------CC------------------------CceeeecccCCCCCCCCCccEEEeCCcccccc
Q 017983            6 KDEHEAQIQFALER--------GI------------------------PAILSVIGTQKLTFPDDAYDLIHCARCRVHWD   53 (363)
Q Consensus         6 ~D~~~~qvq~A~er--------g~------------------------p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~   53 (363)
                      -|+++.+++.|++.        ++                        .+.+.+.+...+|+++++||+|+|+.+++|+.
T Consensus       138 ~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~  217 (264)
T smart00138      138 TDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD  217 (264)
T ss_pred             EECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC
Confidence            48999999999864        12                        24556677778888999999999999998886


Q ss_pred             cC-CCchhhhhcccccCCeEEEEEeC
Q 017983           54 AQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        54 ~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      +. ...++.++.|+|+|||+|++...
T Consensus       218 ~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      218 EPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEECc
Confidence            42 35799999999999999999754

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.24  E-value=4e-06  Score=77.48  Aligned_cols=128  Identities=20%  Similarity=0.257  Sum_probs=73.2

Q ss_pred             hccccchhHHHHHHHhhhh-ccc-cCCCCCceEEEecccccH----HHHHhhc--C--CCeEEEEeecCCc-chHHHHHh
Q 017983          194 AFNKDTTHWYALVSDVYVG-GLA-INWSSVRNVMDMNASYGG----FAAALID--Q--PLWVMNVVPIDAP-DTLSIIFD  262 (363)
Q Consensus       194 ~F~~~~~~W~~~~~~~y~~-~l~-i~~~~~r~VLDvGCG~G~----faa~L~~--~--~v~v~~v~~~d~s-~~L~~a~~  262 (363)
                      .|-.+...|...... .+. .+. ...+..-+|+..||++|.    +|..|.+  .  ..+-..|.++|.+ ..|+.|..
T Consensus         4 ~FFRd~~~f~~l~~~-vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen    4 YFFRDPEQFEALRDE-VLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             -TTTTTTHHHHHHHH-HH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             cccCCHHHHHHHHHH-HHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            355677778766553 331 121 122345789999999993    5555555  1  2234678999998 78877643


Q ss_pred             c--------Cc---------------------------eeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHH
Q 017983          263 R--------GL---------------------------IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVE  307 (363)
Q Consensus       263 R--------gl---------------------------~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~E  307 (363)
                      -        ++                           .-..|+.++ ..|.++.||+|+|..+|.++.. .....++.-
T Consensus        83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~~  160 (196)
T PF01739_consen   83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP-ETQQRVLRR  160 (196)
T ss_dssp             TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-H-HHHHHHHHH
T ss_pred             CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCH-HHHHHHHHH
Confidence            2        10                           012344333 1222399999999999999964 346789999


Q ss_pred             HhHhccCCeEEEEEcCH
Q 017983          308 MDRILRPGGYVLVQDTL  324 (363)
Q Consensus       308 m~RVLRPGG~lii~D~~  324 (363)
                      +++.|+|||++++....
T Consensus       161 l~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  161 LHRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             HGGGEEEEEEEEE-TT-
T ss_pred             HHHHcCCCCEEEEecCc
Confidence            99999999999998653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.23  E-value=2.5e-07  Score=75.13  Aligned_cols=66  Identities=26%  Similarity=0.407  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHHHcC----CCceeeecccCCCCCCCCCccEEEeCCc-ccccccC-CCchhhhhcccccCCe
Q 017983            6 KDEHEAQIQFALERG----IPAILSVIGTQKLTFPDDAYDLIHCARC-RVHWDAQ-GGKPLLELNRILRPGG   71 (363)
Q Consensus         6 ~D~~~~qvq~A~erg----~p~~~~~~~~~~LPfpd~sFD~v~cs~~-~~~~~~~-~~~~l~E~~RVLrPGG   71 (363)
                      -|.++.++.+|.++.    .++.+.+.+.+.+|+.+++||+|+|+.+ ++|+.++ ...++.++.++|||||
T Consensus        30 vD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   30 VDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            489999999999885    7889999999999999999999999766 6665533 3679999999999998

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.22  E-value=4.7e-05  Score=69.78  Aligned_cols=120  Identities=17%  Similarity=0.137  Sum_probs=77.2

Q ss_pred             hhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-ch---HHHHHhc-Cc--eeeeccccccCCCCCCCc
Q 017983          211 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DT---LSIIFDR-GL--IGMYHDWCESFNTYPRTY  283 (363)
Q Consensus       211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~---L~~a~~R-gl--~~~~~d~~e~~lpfp~sF  283 (363)
                      +..|.+.++  ..++|+|||+|+.+..++..+ -...+++++.. +.   ++...+| |.  +.++..++-..|+=..+|
T Consensus        27 ls~L~~~~g--~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~  103 (187)
T COG2242          27 LSKLRPRPG--DRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP  103 (187)
T ss_pred             HHhhCCCCC--CEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence            344555554  599999999999998887321 12235566654 33   3333333 32  334444433333311489


Q ss_pred             ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCce
Q 017983          284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWS  340 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~  340 (363)
                      |.|+.... .      +++.+|.-....|||||.+++.- ..+.....-+..+.+.+.
T Consensus       104 daiFIGGg-~------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~  154 (187)
T COG2242         104 DAIFIGGG-G------NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR  154 (187)
T ss_pred             CEEEECCC-C------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence            99998866 3      35779999999999999999974 455666666666777773

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.19  E-value=3.1e-06  Score=78.75  Aligned_cols=72  Identities=28%  Similarity=0.418  Sum_probs=56.3

Q ss_pred             CCCCHHHHHHHHHc---CCC--ce-eeecccCCCC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER---GIP--AI-LSVIGTQKLT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er---g~p--~~-~~~~~~~~LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+-.+|..+   ..|  .. +.++++++|| .+|+|+|+|+|.+|+-... ++.+.|.|+.|+|||||.+++.-.
T Consensus       105 lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve-~~~k~L~e~~rlLRpgG~iifiEH  183 (252)
T KOG4300|consen  105 LDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVE-DPVKQLNEVRRLLRPGGRIIFIEH  183 (252)
T ss_pred             eCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence            47778887777654   233  33 5567799999 8999999999988665533 578999999999999999999844

>TIGR00417 speE spermidine synthase

Probab=98.18  E-value=4.5e-06  Score=80.24  Aligned_cols=100  Identities=13%  Similarity=0.131  Sum_probs=64.9

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCCCC-CCCcceee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFNTY-PRTYDLLH  287 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~lpf-p~sFDlVh  287 (363)
                      +.++||++|||+|+++..++++. .+..++.+|.+ ++++.+.+.-      +    +.+....+...+.. +++||+|+
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            35699999999999999888764 12356677777 6777666531      0    11222212222333 38999999


Q ss_pred             eccccccccccCC--HHHHHHHHhHhccCCeEEEEE
Q 017983          288 SSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       288 ~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +..... ......  ...++..+.|+|+|||.+++.
T Consensus       151 ~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       151 VDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            875422 111111  357889999999999999986

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.17  E-value=1.7e-06  Score=74.46  Aligned_cols=50  Identities=36%  Similarity=0.653  Sum_probs=43.7

Q ss_pred             cCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983           30 TQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus        30 ~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      ....++++++||+|+|+.+++|.. ++..+|.++.|+|||||+++++.+..
T Consensus        69 ~~~~~~~~~~fD~i~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   69 AQDPPFPDGSFDLIICNDVLEHLP-DPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             CHTHHCHSSSEEEEEEESSGGGSS-HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             hhhhhccccchhhHhhHHHHhhcc-cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            445678999999999999988877 47799999999999999999998854

...

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.17  E-value=2.7e-06  Score=92.14  Aligned_cols=121  Identities=16%  Similarity=0.179  Sum_probs=76.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCC-CCCCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNT-YPRTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lp-fp~sFDlVh~~~  290 (363)
                      .++|||+|||+|+|+.+++..+..  .|+.+|.+ .+++.+.+.    |+    +.++...+...+. +.++||+|++.=
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            369999999999999999987643  47788988 778766553    22    1223322222222 247899999851


Q ss_pred             -cccc-------ccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983          291 -LLSD-------VTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       291 -~l~~-------~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~  343 (363)
                       .|..       +....+...++....|+|+|||.++++.....+....+.+..-.++...
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~  677 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEE  677 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEE
Confidence             0100       0011134678888999999999998876555444445555555565544

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.16  E-value=2.2e-06  Score=79.42  Aligned_cols=71  Identities=21%  Similarity=0.299  Sum_probs=57.4

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.+++.|.++    +.+ +.+...+++.+||++++||+|+++.++++.. +...+|.|+.|+|||||++++..+
T Consensus        77 D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752        77 DFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVP-DYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             ECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence            7889999888865    333 4556667888999999999999987765544 456899999999999999998754

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.16  E-value=1.7e-06  Score=81.66  Aligned_cols=97  Identities=22%  Similarity=0.331  Sum_probs=75.4

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc---CceeeeccccccCCCCC-CCcceeeecccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---GLIGMYHDWCESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R---gl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      ....++|+|||.|..+..|...+|  -.+.-.|.| .|++-+.+-   ++...+-.-.|.+|+|. |+||+|+++..+| 
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH-  148 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH-  148 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-
Confidence            456899999999999999998874  345667888 888877655   34333322237899999 9999999997776 


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |.|  ++...+..+.-+|||.|.|+-+
T Consensus       149 W~N--dLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  149 WTN--DLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhc--cCchHHHHHHHhcCCCccchhH
Confidence            443  3567899999999999999875

>PRK03612 spermidine synthase; Provisional

Probab=98.15  E-value=1.1e-05  Score=84.69  Aligned_cols=120  Identities=15%  Similarity=0.152  Sum_probs=76.0

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC---------c----eeeeccccccCCCC-CCCcc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG---------L----IGMYHDWCESFNTY-PRTYD  284 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg---------l----~~~~~d~~e~~lpf-p~sFD  284 (363)
                      +.++|||+|||+|..+.++.+++. +..++.+|.. ++++.+++.-         +    +.++...+...+.. +++||
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            357999999999999999987642 2356777877 7888887721         1    22333323333433 38999


Q ss_pred             eeeecccccccccc--CCHHHHHHHHhHhccCCeEEEEEcC-----HHHHHHHHHHHHhCCce
Q 017983          285 LLHSSFLLSDVTQR--CDIADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWS  340 (363)
Q Consensus       285 lVh~~~~l~~~~~~--~~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~  340 (363)
                      +|+++......+..  -.-+++++++.|.|||||.+++...     .+....+.+..++....
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~  438 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA  438 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence            99998432211110  0124688999999999999998532     33444555555555443

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.13  E-value=6.2e-06  Score=81.07  Aligned_cols=137  Identities=15%  Similarity=0.233  Sum_probs=84.5

Q ss_pred             hccccchhHHHHH-HHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------
Q 017983          194 AFNKDTTHWYALV-SDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------  265 (363)
Q Consensus       194 ~F~~~~~~W~~~~-~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------  265 (363)
                      .|-..-.+|.+.+ .+.|.       ...+.|||+|||-||=..-.-+.+  +-.++++|.. -.++.|..|.-      
T Consensus        97 i~lRnfNNwIKs~LI~~y~-------~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~  167 (389)
T KOG1975|consen   97 IFLRNFNNWIKSVLINLYT-------KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRF  167 (389)
T ss_pred             eehhhhhHHHHHHHHHHHh-------ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhh
Confidence            4445556776644 12233       235689999999998432222222  2346677776 45666655531      


Q ss_pred             ------eeeeccccc-----cCCCCC-CCcceeeecccccc-ccccCCHHHHHHHHhHhccCCeEEEEEc--CHHHHHHH
Q 017983          266 ------IGMYHDWCE-----SFNTYP-RTYDLLHSSFLLSD-VTQRCDIADVAVEMDRILRPGGYVLVQD--TLEMINKL  330 (363)
Q Consensus       266 ------~~~~~d~~e-----~~lpfp-~sFDlVh~~~~l~~-~~~~~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i  330 (363)
                            .-.+...|.     ..++++ ..||+|-|-++||+ +..-.....+|.-+.+.|||||++|-+-  ...++.++
T Consensus       168 ~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rl  247 (389)
T KOG1975|consen  168 KKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRL  247 (389)
T ss_pred             hcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHH
Confidence                  112222342     246777 55999999999986 3333345668999999999999999874  44466777


Q ss_pred             HHHHHhCCce
Q 017983          331 KPVLHSLQWS  340 (363)
Q Consensus       331 ~~l~~~l~W~  340 (363)
                      +.. ...+|-
T Consensus       248 r~~-e~~~~g  256 (389)
T KOG1975|consen  248 RAG-EVERFG  256 (389)
T ss_pred             Hhc-cchhhc
Confidence            665 444553

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.12  E-value=3.9e-06  Score=78.22  Aligned_cols=100  Identities=16%  Similarity=0.214  Sum_probs=59.2

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC--
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP--  280 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp--  280 (363)
                      .++.|.++++  .+|||+|||+|.+++.|+........|+.++.. ...+.|.++    |+  +.+.+..+.  ..++  
T Consensus        64 ~l~~L~l~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~--~g~~~~  139 (209)
T PF01135_consen   64 MLEALDLKPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS--EGWPEE  139 (209)
T ss_dssp             HHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG--GTTGGG
T ss_pred             HHHHHhcCCC--CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh--hccccC
Confidence            3445556665  599999999999998887631111124455555 455555444    32  333433232  4455  


Q ss_pred             CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          281 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       281 ~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ..||.|++.......+         .++.+-||+||.+++--
T Consensus       140 apfD~I~v~~a~~~ip---------~~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  140 APFDRIIVTAAVPEIP---------EALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             -SEEEEEESSBBSS-----------HHHHHTEEEEEEEEEEE
T ss_pred             CCcCEEEEeeccchHH---------HHHHHhcCCCcEEEEEE
Confidence            7899999998776433         34566699999999853

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.12  E-value=8.2e-06  Score=78.25  Aligned_cols=92  Identities=16%  Similarity=0.283  Sum_probs=70.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCce-eeeccccccCCCCCCCcceeeeccccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-GMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~-~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~  297 (363)
                      ...++||+|+|-|+....|+..-   -.|...+.| .|...-.+||.. -...+|-+.    +..||+|.|-++|-... 
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvLDRc~-  165 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVLDRCD-  165 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhhhccC-
Confidence            45789999999999999997642   246777888 788888889972 222334211    26799999999887533 


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEE
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                        .+..+|.+|++.|+|+|.+++.
T Consensus       166 --~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  166 --RPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             --CHHHHHHHHHHHhCCCCEEEEE
Confidence              4678999999999999999996

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PHA03411 putative methyltransferase; Provisional

Probab=98.11  E-value=8.9e-06  Score=78.88  Aligned_cols=97  Identities=11%  Similarity=0.125  Sum_probs=66.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCC-C-CCcceeeecccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTY-P-RTYDLLHSSFLLSDVT  296 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpf-p-~sFDlVh~~~~l~~~~  296 (363)
                      ..+|||+|||+|.++..++.+.. ...|+++|.+ .|++.+.++-. +..+...   ...+ . ++||+|+++--|.|..
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D---~~e~~~~~kFDlIIsNPPF~~l~  140 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSD---VFEFESNEKFDVVISNPPFGKIN  140 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECc---hhhhcccCCCcEEEEcCCccccC
Confidence            35899999999999888876421 1257888888 89988877521 2222221   2223 2 7899999987777643


Q ss_pred             cc--CC---------------HHHHHHHHhHhccCCeEEEEE
Q 017983          297 QR--CD---------------IADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       297 ~~--~~---------------~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ..  .+               +.+.+....++|+|+|.+++.
T Consensus       141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            21  01               357788999999999987775

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.09  E-value=1.9e-06  Score=83.25  Aligned_cols=94  Identities=21%  Similarity=0.193  Sum_probs=70.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCce-eeeccccccCCCCC-CCcceeeeccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-GMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~-~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~  297 (363)
                      ...+||+|||.|-+.   ...+.  ..+.+.|.+ ..+..+...|-. -.+.| +. .+||+ .+||.++...++||+..
T Consensus        46 gsv~~d~gCGngky~---~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~~ad-~l-~~p~~~~s~d~~lsiavihhlsT  118 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYL---GVNPL--CLIIGCDLCTGLLGGAKRSGGDNVCRAD-AL-KLPFREESFDAALSIAVIHHLST  118 (293)
T ss_pred             cceeeecccCCcccC---cCCCc--ceeeecchhhhhccccccCCCceeehhh-hh-cCCCCCCccccchhhhhhhhhhh
Confidence            458999999999642   22221  125677777 566777777652 33333 33 58999 99999999999999998


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEE
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      .+.-+.+|+|+.|+|||||...|-
T Consensus       119 ~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  119 RERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEE
Confidence            888899999999999999996653

>PLN02366 spermidine synthase

Probab=98.09  E-value=8.6e-06  Score=80.18  Aligned_cols=101  Identities=18%  Similarity=0.162  Sum_probs=63.8

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc------Cc----eeeeccccccCC-CCC-CCccee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------GL----IGMYHDWCESFN-TYP-RTYDLL  286 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R------gl----~~~~~d~~e~~l-pfp-~sFDlV  286 (363)
                      +.++|||+|||.|+++.++++++ .+..|+.++.. .+++.+++.      ++    +.++...+...+ ..+ +.||+|
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            35799999999999999999874 23345555655 567766553      11    223322222122 134 789999


Q ss_pred             eecccccccccc-CCHHHHHHHHhHhccCCeEEEEE
Q 017983          287 HSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       287 h~~~~l~~~~~~-~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++...-.+-+.. -.-..++..+.|.|+|||.+++.
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            986433221110 01246899999999999999874

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.08  E-value=1.9e-05  Score=73.36  Aligned_cols=129  Identities=16%  Similarity=0.228  Sum_probs=85.0

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chH---H-HHHhcCce----eeeccccccCC------CCC-CCccee
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTL---S-IIFDRGLI----GMYHDWCESFN------TYP-RTYDLL  286 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L---~-~a~~Rgl~----~~~~d~~e~~l------pfp-~sFDlV  286 (363)
                      +||.||||||--+++++..-- -+.--|+|.. +.+   . .+.+.|+.    ...-|-+...-      ++. ++||+|
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence            699999999987777776311 1235788776 332   2 23344431    11222211111      123 799999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEE-----------cC----------------HHHHHHHHHHHHhCCc
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ-----------DT----------------LEMINKLKPVLHSLQW  339 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~-----------D~----------------~~~~~~i~~l~~~l~W  339 (363)
                      +|..++|-.+ ....+.++.+..|+|+|||.|++=           ++                ..-++.+.++|.+-..
T Consensus       107 ~~~N~lHI~p-~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL  185 (204)
T PF06080_consen  107 FCINMLHISP-WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL  185 (204)
T ss_pred             eehhHHHhcC-HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence            9999988544 334578999999999999999983           11                1246778999987777


Q ss_pred             eeeee-----cceEEEEEe
Q 017983          340 STNIY-----HDQFLVGKK  353 (363)
Q Consensus       340 ~~~~~-----~~~~li~~K  353 (363)
                      +....     .+++|||+|
T Consensus       186 ~l~~~~~MPANN~~Lvfrk  204 (204)
T PF06080_consen  186 ELEEDIDMPANNLLLVFRK  204 (204)
T ss_pred             ccCcccccCCCCeEEEEeC
Confidence            65333     789999997

The function of this family is unknown.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.06  E-value=8.3e-06  Score=79.58  Aligned_cols=124  Identities=17%  Similarity=0.180  Sum_probs=81.7

Q ss_pred             hhhccccchhHHHHHHHhhhhccccCCCCCceEEEecccccH----HHHHhhcC-C--CeEEEEeecCCc-chHHHHHhc
Q 017983          192 EEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGG----FAAALIDQ-P--LWVMNVVPIDAP-DTLSIIFDR  263 (363)
Q Consensus       192 ~e~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~----faa~L~~~-~--v~v~~v~~~d~s-~~L~~a~~R  263 (363)
                      .-.|=.+...|......  +..   . +..-+|+..||.+|.    +|..|.+. +  ..-..|.++|.+ +.|+.|.+-
T Consensus        93 eT~FFRd~~~f~~L~~~--~~~---~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611         93 LTAFFREAHHFPILAEH--ARR---R-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             CCCccCCcHHHHHHHHH--HHh---c-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            34566777777665432  211   1 123589999999994    55555542 1  112468999998 788766432


Q ss_pred             ---------------------------Cc-----------eeeeccccccCCCCC--CCcceeeeccccccccccCCHHH
Q 017983          264 ---------------------------GL-----------IGMYHDWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIAD  303 (363)
Q Consensus       264 ---------------------------gl-----------~~~~~d~~e~~lpfp--~sFDlVh~~~~l~~~~~~~~~~~  303 (363)
                                                 |.           ....|+..+  .+||  +.||+|+|.++|.|+.. .....
T Consensus       167 ~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~--~~~~~~~~fD~I~cRNvliyF~~-~~~~~  243 (287)
T PRK10611        167 IYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA--KQWAVPGPFDAIFCRNVMIYFDK-TTQER  243 (287)
T ss_pred             CCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC--CCCccCCCcceeeHhhHHhcCCH-HHHHH
Confidence                                       10           012233322  2454  89999999999999854 45688


Q ss_pred             HHHHHhHhccCCeEEEEEcCH
Q 017983          304 VAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       304 ~L~Em~RVLRPGG~lii~D~~  324 (363)
                      ++..+.+.|+|||++++....
T Consensus       244 vl~~l~~~L~pgG~L~lG~sE  264 (287)
T PRK10611        244 ILRRFVPLLKPDGLLFAGHSE  264 (287)
T ss_pred             HHHHHHHHhCCCcEEEEeCcc
Confidence            999999999999999987653

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.06  E-value=2.5e-06  Score=80.86  Aligned_cols=72  Identities=22%  Similarity=0.178  Sum_probs=57.4

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCC-CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKL-TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~L-Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |+.  +.+...+++.+ ++++++||+|+|+.+++|+. ++..+|.++.|+|||||++++...
T Consensus        72 vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~~  150 (255)
T PRK11036         72 CDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVA-DPKSVLQTLWSVLRPGGALSLMFY  150 (255)
T ss_pred             EECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhC-CHHHHHHHHHHHcCCCeEEEEEEE
Confidence            48899999999876    432  34555666666 58889999999998886654 467899999999999999998754

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.04  E-value=1.3e-05  Score=75.00  Aligned_cols=121  Identities=16%  Similarity=0.254  Sum_probs=75.0

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh-----cCcee-eeccccccCCCCCCCcceeeecccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD-----RGLIG-MYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~-----Rgl~~-~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ...++||.|||.|..+..|+-.-...  |.-++.. +.++.|.+     .+-++ .+...-+.+-|-++.||+|.+-+|+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~--VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l  132 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDE--VDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL  132 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SE--EEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred             CcceEEecccccchhHHHHHHHhcCE--eEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence            46789999999999998776543332  3334444 67887773     22222 2322223344445899999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcCHH----------------HHHHHHHHHHhCCceeee
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE----------------MINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~----------------~~~~i~~l~~~l~W~~~~  343 (363)
                      .|+++. ++..+|.-...-|||+|.++|-|...                ....+++|.+.-..++..
T Consensus       133 ghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~  198 (218)
T PF05891_consen  133 GHLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVK  198 (218)
T ss_dssp             GGS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred             ccCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEE
Confidence            999875 68899999999999999999975321                235566666665555544

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK06922 hypothetical protein; Provisional

Probab=98.04  E-value=3.3e-06  Score=90.14  Aligned_cols=73  Identities=21%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCC--CCCCCccEEEeCCccccccc------------CCCchhhhhcccc
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLT--FPDDAYDLIHCARCRVHWDA------------QGGKPLLELNRIL   67 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~~~------------~~~~~l~E~~RVL   67 (363)
                      -|.|+.+++.|.++    +....+...++..+|  |++++||+|+++.++++|.+            +...+|+++.|+|
T Consensus       448 IDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVL  527 (677)
T PRK06922        448 IDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVL  527 (677)
T ss_pred             EECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHc
Confidence            48999999999876    344555667777888  99999999999988877632            2357899999999


Q ss_pred             cCCeEEEEEeC
Q 017983           68 RPGGFFIWSAT   78 (363)
Q Consensus        68 rPGG~~~~s~~   78 (363)
                      ||||++++...
T Consensus       528 KPGGrLII~D~  538 (677)
T PRK06922        528 KPGGRIIIRDG  538 (677)
T ss_pred             CCCcEEEEEeC
Confidence            99999999865

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=1.9e-05  Score=77.25  Aligned_cols=108  Identities=18%  Similarity=0.286  Sum_probs=68.0

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cce--eeeccccccCCCCCCCcceeeeccccccc
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--GMYHDWCESFNTYPRTYDLLHSSFLLSDV  295 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~--~~~~d~~e~~lpfp~sFDlVh~~~~l~~~  295 (363)
                      +|||+|||+|-+++.|++..- ...++-+|.+ ..++.+++-    ++.  .++++.  -..+-.+.||+|+|+==||.=
T Consensus       161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~--~~~~v~~kfd~IisNPPfh~G  237 (300)
T COG2813         161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASN--LYEPVEGKFDLIISNPPFHAG  237 (300)
T ss_pred             cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEec--ccccccccccEEEeCCCccCC
Confidence            999999999999999998653 2346667777 455544332    222  234331  123333799999999666521


Q ss_pred             ccc--CCHHHHHHHHhHhccCCeEEEEEcC--HHHHHHHHHH
Q 017983          296 TQR--CDIADVAVEMDRILRPGGYVLVQDT--LEMINKLKPV  333 (363)
Q Consensus       296 ~~~--~~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~l  333 (363)
                      ..-  .-...++.+-.+.|++||.+.|--.  ..+-..++++
T Consensus       238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~  279 (300)
T COG2813         238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKEL  279 (300)
T ss_pred             cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHh
Confidence            111  0123688999999999999887643  2234444443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.02  E-value=2.2e-05  Score=74.11  Aligned_cols=95  Identities=11%  Similarity=0.022  Sum_probs=69.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc-----------------Cc-eee-eccccccCCCC-
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR-----------------GL-IGM-YHDWCESFNTY-  279 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R-----------------gl-~~~-~~d~~e~~lpf-  279 (363)
                      ..+||+.|||.|.=+.+|+++|..   |+++|.| ..++.++++                 |. +.+ ..|..+  ++. 
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~--l~~~  118 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN--LPKI  118 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC--CCcc
Confidence            359999999999999999998764   6777888 556655442                 11 222 233221  221 


Q ss_pred             --C-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          280 --P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       280 --p-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                        . +.||+|.=..+|.+++. ....++..-|.++|||||.+++.
T Consensus       119 ~~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll  162 (226)
T PRK13256        119 ANNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLL  162 (226)
T ss_pred             ccccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence              1 57999999999999963 45688999999999999998775

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.02  E-value=2e-05  Score=70.23  Aligned_cols=95  Identities=11%  Similarity=0.084  Sum_probs=61.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC-CCcceeeecccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      ..+|||+|||+|.++..|++++.   .++++|.+ .+++.+.++.    -+.+++..+. .++++ ..||.|+++--++ 
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~-~~~~~~~~~d~vi~n~Py~-   88 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDAL-KFDLPKLQPYKVVGNLPYN-   88 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchh-cCCccccCCCEEEECCCcc-
Confidence            35899999999999999998743   46777877 7887776652    1334443333 35667 6799998874433 


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      .. ...+..++.+.  -+.++|.+++...
T Consensus        89 ~~-~~~i~~~l~~~--~~~~~~~l~~q~e  114 (169)
T smart00650       89 IS-TPILFKLLEEP--PAFRDAVLMVQKE  114 (169)
T ss_pred             cH-HHHHHHHHhcC--CCcceEEEEEEHH
Confidence            21 12233343332  2568898888743

>TIGR00740 methyltransferase, putative

Probab=97.99  E-value=1.4e-05  Score=74.90  Aligned_cols=72  Identities=11%  Similarity=0.119  Sum_probs=58.2

Q ss_pred             CCCCHHHHHHHHHc----C--CCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----G--IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g--~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.++..|+++    +  ..+.+...+...+|+++  ||+|+|+.+++|+++ +...+|.++.|+|||||.|+++.+
T Consensus        85 vD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740        85 IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             EeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence            48899999999876    2  24567777888888874  899999988877653 236799999999999999999976


Q ss_pred             C
Q 017983           79 P   79 (363)
Q Consensus        79 ~   79 (363)
                      .
T Consensus       163 ~  163 (239)
T TIGR00740       163 F  163 (239)
T ss_pred             c
Confidence            3

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.98  E-value=4.2e-05  Score=70.06  Aligned_cols=102  Identities=17%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      -|.++.+++.|+++    |++ +.+...+++.+++ +++||+|+|.. .    .+...++.++.|+|||||+|++...+.
T Consensus        75 iD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-~----~~~~~~l~~~~~~LkpGG~lv~~~~~~  148 (187)
T PRK00107         75 VDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-V----ASLSDLVELCLPLLKPGGRFLALKGRD  148 (187)
T ss_pred             EeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-c----cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            37888888877654    554 5666667777877 78999999863 1    123469999999999999999996642


Q ss_pred             CCCChhhHHHHHHHHHHHhhcceEEEEEecC-CCc----eeEEEEec
Q 017983           81 YRHDDRHRSVWNAMVNLTESMCWKAVARSVD-SNR----IGFVIYQK  122 (363)
Q Consensus        81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~-~~~----~~~~i~~k  122 (363)
                      +         ...++++++...|.+...+.- .+|    -|+.|-+|
T Consensus       149 ~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (187)
T PRK00107        149 P---------EEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRK  186 (187)
T ss_pred             h---------HHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEec
Confidence            2         456889999999998776542 222    47788776

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.98  E-value=7.2e-06  Score=82.45  Aligned_cols=94  Identities=20%  Similarity=0.236  Sum_probs=65.2

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCCC-CCcceeeecccc
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      .++|+|||+|+...+++....  -++++.+.+ ..+..+.+.    ++    .-++++ + ...||+ ++||.+-+..+.
T Consensus       113 ~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~-~-~~~~fedn~fd~v~~ld~~  188 (364)
T KOG1269|consen  113 KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVAD-F-GKMPFEDNTFDGVRFLEVV  188 (364)
T ss_pred             cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhh-h-hcCCCCccccCcEEEEeec
Confidence            899999999998888875321  123444444 222222111    11    113333 3 257999 999999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      .|.++   .+.++.|++|||+|||+++.-+.
T Consensus       189 ~~~~~---~~~~y~Ei~rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  189 CHAPD---LEKVYAEIYRVLKPGGLFIVKEW  216 (364)
T ss_pred             ccCCc---HHHHHHHHhcccCCCceEEeHHH
Confidence            98874   57899999999999999998653

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.98  E-value=2e-05  Score=70.66  Aligned_cols=141  Identities=18%  Similarity=0.199  Sum_probs=67.6

Q ss_pred             ccc-cCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHH---HHhcCceee--eccccccCCCCC-CCcce
Q 017983          213 GLA-INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSI---IFDRGLIGM--YHDWCESFNTYP-RTYDL  285 (363)
Q Consensus       213 ~l~-i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~---a~~Rgl~~~--~~d~~e~~lpfp-~sFDl  285 (363)
                      .+. +..+...+|||+||++|+|+..+.++......|+++|...+-..   -.-+|-+..  ..+.-...++=. ..||+
T Consensus        15 ~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl   94 (181)
T PF01728_consen   15 KFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDL   94 (181)
T ss_dssp             TTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred             HCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcce
Confidence            344 45556689999999999999999988622334555554422000   000111100  000000111112 68999


Q ss_pred             eeecccccc--------ccccCCHHHHHHHHhHhccCCeEEEEE-----cCHHHHHHHHHHHHhCCceeeee-----cce
Q 017983          286 LHSSFLLSD--------VTQRCDIADVAVEMDRILRPGGYVLVQ-----DTLEMINKLKPVLHSLQWSTNIY-----HDQ  347 (363)
Q Consensus       286 Vh~~~~l~~--------~~~~~~~~~~L~Em~RVLRPGG~lii~-----D~~~~~~~i~~l~~~l~W~~~~~-----~~~  347 (363)
                      |+|..+..-        ..........|.=+.+.|||||.+++-     +..+.+..++..-+..++-.-..     .|.
T Consensus        95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~  174 (181)
T PF01728_consen   95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEE  174 (181)
T ss_dssp             EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEE
T ss_pred             eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEE
Confidence            999873321        111111234445555789999988874     22345555555444433321111     566


Q ss_pred             EEEEEe
Q 017983          348 FLVGKK  353 (363)
Q Consensus       348 ~li~~K  353 (363)
                      .+||++
T Consensus       175 Ylv~~~  180 (181)
T PF01728_consen  175 YLVCRG  180 (181)
T ss_dssp             EEESEE
T ss_pred             EEEEcC
Confidence            666653

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=97.95  E-value=1.3e-05  Score=69.73  Aligned_cols=71  Identities=27%  Similarity=0.431  Sum_probs=60.4

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCC--CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT--FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+|+.|.++    +++ +.+.+.+...++  |+ +.||+|+++..+++.. +...+|.++.|+|+|||.++++.+
T Consensus        34 vD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~  111 (152)
T PF13847_consen   34 VDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFP-DPEKVLKNIIRLLKPGGILIISDP  111 (152)
T ss_dssp             EESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTS-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCchhhcc-CHHHHHHHHHHHcCCCcEEEEEEC
Confidence            38899999999984    776 777778887788  88 9999999998775555 456799999999999999999977

...

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.94  E-value=7.9e-05  Score=76.55  Aligned_cols=110  Identities=19%  Similarity=0.299  Sum_probs=71.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeecccccc---CCCCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCES---FNTYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~---~lpfp-~sFDlVh~~  289 (363)
                      ..+|||+|||+|.++..|+....   .|+++|.+ +|++.|.+.    |+  +..+....+.   .++++ ++||+|++.
T Consensus       298 ~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        298 GDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             CCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence            35899999999999999998753   47788988 788877654    32  2222221221   24466 789999875


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhCCcee
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWST  341 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~  341 (363)
                            +.+.++...+..+.+ |+|++.++++=. ...-..++.|.+. .|++
T Consensus       375 ------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~-gY~l  419 (443)
T PRK13168        375 ------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEA-GYRL  419 (443)
T ss_pred             ------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhC-CcEE
Confidence                  122334556666666 699999999844 4444556665432 3543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.94  E-value=1.1e-05  Score=79.82  Aligned_cols=70  Identities=20%  Similarity=0.199  Sum_probs=54.7

Q ss_pred             CCCHHHHHHHH--Hc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFAL--ER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~--er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.|+.++..+.  ++    ...+.+...+.+.+|+ +++||+|+|..+++|.. ++..+|.++.|+|||||.|+++..
T Consensus       152 D~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~~~  227 (322)
T PRK15068        152 DPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRR-SPLDHLKQLKDQLVPGGELVLETL  227 (322)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccC-CHHHHHHHHHHhcCCCcEEEEEEE
Confidence            67777765432  22    2246667778899999 89999999998887765 467899999999999999999854

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=97.93  E-value=1.7e-05  Score=75.10  Aligned_cols=71  Identities=14%  Similarity=0.138  Sum_probs=56.8

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.+++.|+++    |.  .+.+...++..+|+++  ||+|+|+.++++..++ ...++.++.|+|||||.|+++..
T Consensus        88 vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451         88 IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             EeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            48899999999887    33  3566666778888864  8999999888776542 25799999999999999999864

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=97.93  E-value=8.7e-06  Score=75.07  Aligned_cols=71  Identities=23%  Similarity=0.312  Sum_probs=56.8

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.|++.|.++    |+.  +.+...+....|++ ++||+|++..+++|+.+ ...++.++.|+|||||+++++.+
T Consensus        29 id~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       29 YTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKD-KMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             EECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhCCC-HHHHHHHHHHHcCCCCEEEEEEc
Confidence            47899999999876    333  35556666666887 48999999888877754 56899999999999999999865

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.90  E-value=3.9e-05  Score=70.31  Aligned_cols=112  Identities=14%  Similarity=0.217  Sum_probs=69.6

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHH----HHHhcCc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLS----IIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~----~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      .+|||+|||.|.+...|++.+... .++++|-+ ..++    +|..+|+   |...+..-.. -.|- ..||+|+=-..+
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~-~~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD-PDFLSGQFDLVLDKGTL  146 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC-CcccccceeEEeecCce
Confidence            399999999999999999987542 37788887 5443    4445555   2222211111 1244 788888754333


Q ss_pred             ccc---c--ccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHH
Q 017983          293 SDV---T--QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLH  335 (363)
Q Consensus       293 ~~~---~--~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~  335 (363)
                      -.+   +  ....+..++--+.++|+|||.|+|+--+-..+++.+...
T Consensus       147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~  194 (227)
T KOG1271|consen  147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE  194 (227)
T ss_pred             eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHh
Confidence            211   1  112234578889999999999999865544444444443

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.89  E-value=1.2e-05  Score=73.62  Aligned_cols=70  Identities=20%  Similarity=0.284  Sum_probs=53.0

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.|+.+++.|+++    ++. +.+.+.+...++++ ++||+|+|+.+++++.. +...++.++.|+|||||++++.
T Consensus        58 vD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         58 WDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            38899999887654    554 45556677777885 67999999988765543 2468999999999999996553

>TIGR00477 tehB tellurite resistance protein TehB

Probab=97.88  E-value=1.2e-05  Score=73.60  Aligned_cols=70  Identities=19%  Similarity=0.297  Sum_probs=53.4

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.|+.+++.|+++    |+++...+.+...++++ ++||+|+|+.++++.+. +...++.++.|+|||||++++.
T Consensus        58 iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        58 WDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             EECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            48889999877544    67666666666667775 68999999988877653 2357999999999999996554

Part of a tellurite-reducing operon tehA and tehB

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.87  E-value=6e-06  Score=78.27  Aligned_cols=73  Identities=19%  Similarity=0.309  Sum_probs=61.8

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.+|..|+.|..+    |+.+......++.|-...++||+|+|..+++|.++ +..+++++.+.+||||.+++|+.-
T Consensus        87 iD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~d-p~~~~~~c~~lvkP~G~lf~STin  163 (243)
T COG2227          87 IDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPD-PESFLRACAKLVKPGGILFLSTIN  163 (243)
T ss_pred             ecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCC-HHHHHHHHHHHcCCCcEEEEeccc
Confidence            48888888888744    66655666668888888899999999999999875 778999999999999999999873

>TIGR00452 methyltransferase, putative

Probab=97.87  E-value=1.5e-05  Score=78.62  Aligned_cols=71  Identities=18%  Similarity=0.116  Sum_probs=53.8

Q ss_pred             CCCCHHHHHHHHH--c--C--CCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALE--R--G--IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~e--r--g--~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.++.++..  +  +  ..+.+...+.+.+|+. ++||+|+|+.+++|+. ++..+|.|+.|+|||||.|+++..
T Consensus       150 iDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       150 IDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             EcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEEE
Confidence            3677777654321  1  1  2345566778889876 5899999999998876 466899999999999999999854

Known examples to date are restricted to the proteobacteria.

>PHA03412 putative methyltransferase; Provisional

Probab=97.86  E-value=4.4e-05  Score=72.60  Aligned_cols=97  Identities=13%  Similarity=0.121  Sum_probs=59.8

Q ss_pred             ceEEEecccccHHHHHhhcCC--CeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCCCCcceeeecccccccc-
Q 017983          222 RNVMDMNASYGGFAAALIDQP--LWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYPRTYDLLHSSFLLSDVT-  296 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~--v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~-  296 (363)
                      .+|||+|||+|.++..++.+-  ....+|+++|.. .++..|.+... +..++.... ..++..+||+|+++==+.-.. 
T Consensus        51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~-~~~~~~~FDlIIsNPPY~~~~~  129 (241)
T PHA03412         51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADAL-TTEFDTLFDMAISNPPFGKIKT  129 (241)
T ss_pred             CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchh-cccccCCccEEEECCCCCCccc
Confidence            599999999999999887631  012368888888 78888875532 222221111 122347999999872222111 


Q ss_pred             -c-------cCCHHHHHHHHhHhccCCeEEEE
Q 017983          297 -Q-------RCDIADVAVEMDRILRPGGYVLV  320 (363)
Q Consensus       297 -~-------~~~~~~~L~Em~RVLRPGG~lii  320 (363)
                       +       ..-...++....|.|+||+. |+
T Consensus       130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL  160 (241)
T PHA03412        130 SDFKGKYTGAEFEYKVIERASQIARQGTF-II  160 (241)
T ss_pred             cccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence             1       01135588888898888886 44

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.86  E-value=5.1e-05  Score=71.89  Aligned_cols=133  Identities=17%  Similarity=0.209  Sum_probs=80.2

Q ss_pred             CCCceEEEecccccHHHHHhhcCCC-eEEEEeecCCcchHHHH----HhcCc----eeeeccccccCC-CCC-CCcceee
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPL-WVMNVVPIDAPDTLSII----FDRGL----IGMYHDWCESFN-TYP-RTYDLLH  287 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v-~v~~v~~~d~s~~L~~a----~~Rgl----~~~~~d~~e~~l-pfp-~sFDlVh  287 (363)
                      ....+|||.+.|.|.+|+.-+++++ .++.|. .|. +-|+.|    ..|++    +.+++..|.+.. .|+ .|||+|+
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvE-kdp-~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi  210 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVE-KDP-NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII  210 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEe-eCC-CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence            3456999999999999999988886 443331 111 122211    12222    334443343333 488 8999886


Q ss_pred             ec-cccccccccCCHHHHHHHHhHhccCCeEEEEEc--------CHHHHHHHHHHHHhCCceeeee-cceE-EEEEec
Q 017983          288 SS-FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD--------TLEMINKLKPVLHSLQWSTNIY-HDQF-LVGKKG  354 (363)
Q Consensus       288 ~~-~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D--------~~~~~~~i~~l~~~l~W~~~~~-~~~~-li~~K~  354 (363)
                      -. ==|++-... --+.+-.|++|||||||.++=-.        ..+....+.+.+.+..+.+... .+.. ++++|+
T Consensus       211 HDPPRfS~AgeL-YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~A~k~  287 (287)
T COG2521         211 HDPPRFSLAGEL-YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALGVVAVKP  287 (287)
T ss_pred             eCCCccchhhhH-hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccceEEecC
Confidence            42 112221111 13678999999999999987532        2346678888888888874333 4444 566664

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.83  E-value=5.4e-05  Score=71.56  Aligned_cols=112  Identities=20%  Similarity=0.250  Sum_probs=72.5

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-----chHHHHHhcCc--eeeeccccccCCCC--C-CCcceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDRGL--IGMYHDWCESFNTY--P-RTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-----~~L~~a~~Rgl--~~~~~d~~e~~lpf--p-~sFDlVh~~~~  291 (363)
                      ..+|+||||.|.|...+|.+.-.. ++.+++..     ..+..+.+.|+  +.++...+...+.+  + +|.|-|+..+-
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            489999999999999999864322 34444433     45667777777  44454445444543  4 59999987633


Q ss_pred             cc-----cccccCCHHHHHHHHhHhccCCeEEEEEcCHH-HHHH-HHHHH
Q 017983          292 LS-----DVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINK-LKPVL  334 (363)
Q Consensus       292 l~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~-i~~l~  334 (363)
                      =.     |...+---...|.++.|+|+|||.+.+..+.+ ..+. +....
T Consensus       129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~  178 (227)
T COG0220         129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVL  178 (227)
T ss_pred             CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHH
Confidence            11     21111112579999999999999999975544 4444 44444

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.82  E-value=8.4e-06  Score=77.30  Aligned_cols=90  Identities=19%  Similarity=0.278  Sum_probs=60.1

Q ss_pred             cCCCCHHHHHHHHHcCCCceee-----ecccCCCCCC--CCCccEEEeCCcccccccCCCchhhhhcccccCCe-EEEEE
Q 017983            5 PKDEHEAQIQFALERGIPAILS-----VIGTQKLTFP--DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGG-FFIWS   76 (363)
Q Consensus         5 p~D~~~~qvq~A~erg~p~~~~-----~~~~~~LPfp--d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG-~~~~s   76 (363)
                      --|+|++|++.|.+. -|+.-.     ..+.+-.++-  ++|.|+|+|+.|. ||.+ ...++.++.||||+.| .+++=
T Consensus        60 atD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~-HWFd-le~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen   60 ATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV-HWFD-LERFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             eecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhhhH-Hhhc-hHHHHHHHHHHcCCCCCEEEEE
Confidence            459999999999655 222222     1223334554  9999999999887 8986 5589999999999866 55543


Q ss_pred             eCC-CCCCChhhHHHHHHHHHHHhhcceE
Q 017983           77 ATP-VYRHDDRHRSVWNAMVNLTESMCWK  104 (363)
Q Consensus        77 ~~~-~~~~~~e~~~~~~~~~~l~~~~cw~  104 (363)
                      ..- ..-.       |-+...+..++||+
T Consensus       137 ~Y~dd~v~-------~pE~dsv~~r~~~~  158 (261)
T KOG3010|consen  137 NYNDDFVD-------WPEFDSVMLRLYDS  158 (261)
T ss_pred             EccCCCcC-------CHHHHHHHHHHhhc
Confidence            321 1112       34456677777776

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.81  E-value=0.00018  Score=66.06  Aligned_cols=72  Identities=24%  Similarity=0.271  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHHHHcC------CCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERG------IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg------~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|.++-      .++.+...+...+++++++||+|+++.+++++.+ ...+|.++.++|+|||++++...
T Consensus        82 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~-~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216         82 LDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPD-IDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             EeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCC-HHHHHHHHHHhccCCcEEEEEEe
Confidence            477888998888762      2356666778888999999999999988877654 56899999999999999988643

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.80  E-value=9.4e-05  Score=75.54  Aligned_cols=111  Identities=19%  Similarity=0.200  Sum_probs=70.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCC---CCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFN---TYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~l---pfp-~sFDlVh~~  289 (363)
                      ..+|||+|||+|.++..|++...   .|+++|.+ ++++.|.+.    |+  +.++...++..+   ++. ++||+|++.
T Consensus       293 ~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       293 EELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD  369 (431)
T ss_pred             CCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence            35899999999999999987643   46777877 777766553    32  233333333222   344 689999864


Q ss_pred             cccccccccCC-HHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCcee
Q 017983          290 FLLSDVTQRCD-IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST  341 (363)
Q Consensus       290 ~~l~~~~~~~~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~  341 (363)
                      --      +.+ ...++.++.+ |+|+|.++++-....+.+-.+++..-.|+.
T Consensus       370 PP------r~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~  415 (431)
T TIGR00479       370 PP------RKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGI  415 (431)
T ss_pred             cC------CCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeE
Confidence            21      112 2456777665 899999999866665544333343444544

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.80  E-value=7e-05  Score=76.20  Aligned_cols=120  Identities=17%  Similarity=0.194  Sum_probs=69.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCC-C--C-CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNT-Y--P-RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lp-f--p-~sFDlVh  287 (363)
                      ..+|||+|||+|+|+.+.+..+..  .|+.+|.+ .+++.+.+.    |+    +.++...+...+. +  . ++||+|+
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            368999999999998776554432  46777887 677665442    22    1223222222221 2  2 5899999


Q ss_pred             ecccc-cc----c-cccCCHHHHHHHHhHhccCCeEEEEEcC------HHHHHHHHHHHHhCCceee
Q 017983          288 SSFLL-SD----V-TQRCDIADVAVEMDRILRPGGYVLVQDT------LEMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       288 ~~~~l-~~----~-~~~~~~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~l~~~l~W~~~  342 (363)
                      +.==. ..    + ....+..+++.-..++|+|||.++...-      .++.+.+.+-+..-.-+.+
T Consensus       299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~  365 (396)
T PRK15128        299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ  365 (396)
T ss_pred             ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence            87111 10    0 0001345566678899999999998532      2345555555554444433

>PLN02476 O-methyltransferase

Probab=97.74  E-value=0.00018  Score=69.95  Aligned_cols=126  Identities=12%  Similarity=0.163  Sum_probs=76.5

Q ss_pred             CCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHH----HhcCc---eeeeccccccCCC-C-----CCC
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSII----FDRGL---IGMYHDWCESFNT-Y-----PRT  282 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a----~~Rgl---~~~~~d~~e~~lp-f-----p~s  282 (363)
                      +.++||++|+|+|..+.+|+..   +..   |+.++.. +.+++|    .+-|+   +.+....+...|+ +     .++
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~---V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~  194 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGC---LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS  194 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence            3579999999999998888752   222   4455554 444444    23344   2333222222232 1     268


Q ss_pred             cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC------------HHHHHHHHH----HHHhCCceeeee--
Q 017983          283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT------------LEMINKLKP----VLHSLQWSTNIY--  344 (363)
Q Consensus       283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~------------~~~~~~i~~----l~~~l~W~~~~~--  344 (363)
                      ||+|+...      ++.+...++....+.|||||.+++-+.            ......|++    +...=++...+.  
T Consensus       195 FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi  268 (278)
T PLN02476        195 YDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI  268 (278)
T ss_pred             CCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence            99999762      234567789999999999999887532            011123333    444555665554  


Q ss_pred             cceEEEEEec
Q 017983          345 HDQFLVGKKG  354 (363)
Q Consensus       345 ~~~~li~~K~  354 (363)
                      .+.+++++|+
T Consensus       269 gDGl~i~~K~  278 (278)
T PLN02476        269 GDGMTICRKR  278 (278)
T ss_pred             CCeeEEEEEC
Confidence            6788888875

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.73  E-value=0.00029  Score=64.58  Aligned_cols=132  Identities=17%  Similarity=0.279  Sum_probs=73.8

Q ss_pred             cchhHHHHHHHhhhhccccCCCCCceEEEeccccc--HHHHHhhcCCCeEEEEeecCCc----chHHHH-HhcCc--eee
Q 017983          198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYG--GFAAALIDQPLWVMNVVPIDAP----DTLSII-FDRGL--IGM  268 (363)
Q Consensus       198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G--~faa~L~~~~v~v~~v~~~d~s----~~L~~a-~~Rgl--~~~  268 (363)
                      ..+.|.+.+.+...-.--+.... .+++|||+|-|  ++..+++.....   ++-+|..    +.|+.+ .+=|+  +.+
T Consensus        27 ~~~~~~~Hi~DSL~~~~~~~~~~-~~~lDiGSGaGfPGipLaI~~p~~~---~~LvEs~~KK~~FL~~~~~~L~L~nv~v  102 (184)
T PF02527_consen   27 PEEIWERHILDSLALLPFLPDFG-KKVLDIGSGAGFPGIPLAIARPDLQ---VTLVESVGKKVAFLKEVVRELGLSNVEV  102 (184)
T ss_dssp             HHHHHHHHHHHHHGGGGCS-CCC-SEEEEETSTTTTTHHHHHHH-TTSE---EEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred             HHHHHHHHHHHHHHhhhhhccCC-ceEEecCCCCCChhHHHHHhCCCCc---EEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence            34677766654211101122222 27999999999  444444443333   2333433    345444 33355  556


Q ss_pred             eccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHH---HHHHHHHHHhCCcee
Q 017983          269 YHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEM---INKLKPVLHSLQWST  341 (363)
Q Consensus       269 ~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~---~~~i~~l~~~l~W~~  341 (363)
                      ++...|. ..++.+||+|++. ++.      .+..++.-+.+.|+|||.+++.-....   +...+...+.+.++.
T Consensus       103 ~~~R~E~-~~~~~~fd~v~aR-Av~------~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~  170 (184)
T PF02527_consen  103 INGRAEE-PEYRESFDVVTAR-AVA------PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV  170 (184)
T ss_dssp             EES-HHH-TTTTT-EEEEEEE-SSS------SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred             EEeeecc-cccCCCccEEEee-hhc------CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence            7777776 3345999999976 333      356688889999999999999865444   444444445554443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.72  E-value=4.5e-05  Score=69.35  Aligned_cols=72  Identities=21%  Similarity=0.267  Sum_probs=58.2

Q ss_pred             CCCCHHHHHHHHHcCC---CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGI---PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~---p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.+.++..   .+.+...++..+||++++||+|+|+..+++.. +...+++++.++|||||++++...
T Consensus        70 iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934        70 VDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             EECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3778899999988742   35566677788999999999999988776655 466899999999999999998754

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.72  E-value=7.4e-05  Score=73.40  Aligned_cols=103  Identities=16%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      .+|||+|||+|.++..|+..+.   .|+++|.+ .+++.|.+.    |+  +..+....+..++-. +.||+|++.    
T Consensus       175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d----  247 (315)
T PRK03522        175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN----  247 (315)
T ss_pred             CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC----
Confidence            6899999999999999998753   46788888 788766543    33  223332222222223 689999987    


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcCHHH-HHHHHHH
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPV  333 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l  333 (363)
                        +.+.++...+.++..-++|++.++++-.... ...++.+
T Consensus       248 --PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l  286 (315)
T PRK03522        248 --PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL  286 (315)
T ss_pred             --CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence              2233444445555555889999999855443 3444444

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.71  E-value=4.1e-05  Score=70.87  Aligned_cols=69  Identities=14%  Similarity=0.106  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|+|+.+++.|+++.-.+.+.+.++.. ||++++||+|+|..+++|+..+ ...++.|+.|++  +++++++.
T Consensus        73 iDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587        73 VEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             EECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence            489999999999874445566667666 9999999999999999988632 367999999998  57777763

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.70  E-value=0.00017  Score=68.20  Aligned_cols=106  Identities=17%  Similarity=0.202  Sum_probs=65.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-ee-----ee--ccccccCCCCC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IG-----MY--HDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~-----~~--~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      ..+|||+|||||+|+..|++.++.  .|+++|.+ +|+........ +-     .+  .+|.+  .+.. ..||+++++.
T Consensus        76 ~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~--~~~d~~~~DvsfiS~  151 (228)
T TIGR00478        76 NKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD--IFPDFATFDVSFISL  151 (228)
T ss_pred             CCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH--cCCCceeeeEEEeeh
Confidence            468999999999999999988643  47888988 67765333321 11     01  12211  2222 4566655542


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcC----------------------HHHHHHHHHHHHhCCceee
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------------------LEMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------------------~~~~~~i~~l~~~l~W~~~  342 (363)
                      .           .+|..|.+.|+| |.+++.-.                      ...+.++...+..+.|.+.
T Consensus       152 ~-----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~  213 (228)
T TIGR00478       152 I-----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK  213 (228)
T ss_pred             H-----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence            2           257788888888 77766421                      2345666666677777653

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.70  E-value=7.1e-05  Score=69.92  Aligned_cols=91  Identities=12%  Similarity=0.215  Sum_probs=52.3

Q ss_pred             eecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEE
Q 017983           26 SVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKA  105 (363)
Q Consensus        26 ~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~  105 (363)
                      .+.+...+|.+|++.|+|+|.+++.-  -+...+|.|+.|||||||.|.+.---  .....    -+.-.+..++++.++
T Consensus       109 tacdia~vPL~~~svDv~VfcLSLMG--Tn~~~fi~EA~RvLK~~G~L~IAEV~--SRf~~----~~~F~~~~~~~GF~~  180 (219)
T PF05148_consen  109 TACDIANVPLEDESVDVAVFCLSLMG--TNWPDFIREANRVLKPGGILKIAEVK--SRFEN----VKQFIKALKKLGFKL  180 (219)
T ss_dssp             EES-TTS-S--TT-EEEEEEES---S--S-HHHHHHHHHHHEEEEEEEEEEEEG--GG-S-----HHHHHHHHHCTTEEE
T ss_pred             EEecCccCcCCCCceeEEEEEhhhhC--CCcHHHHHHHHheeccCcEEEEEEec--ccCcC----HHHHHHHHHHCCCeE
Confidence            34567789999999999999777643  22346999999999999999997220  11111    134445567889999


Q ss_pred             EEEecCCCceeEEEEecCC
Q 017983          106 VARSVDSNRIGFVIYQKPV  124 (363)
Q Consensus       106 ~~~~~~~~~~~~~i~~k~~  124 (363)
                      ..+....+.=-+-.|+|..
T Consensus       181 ~~~d~~n~~F~~f~F~K~~  199 (219)
T PF05148_consen  181 KSKDESNKHFVLFEFKKIR  199 (219)
T ss_dssp             EEEE--STTEEEEEEEE-S
T ss_pred             EecccCCCeEEEEEEEEcC
Confidence            8864322222344456654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.70  E-value=0.00023  Score=66.21  Aligned_cols=126  Identities=15%  Similarity=0.185  Sum_probs=75.5

Q ss_pred             CCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHH----HhcCc---eeeeccccccCCC-----CC-CC
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSII----FDRGL---IGMYHDWCESFNT-----YP-RT  282 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a----~~Rgl---~~~~~d~~e~~lp-----fp-~s  282 (363)
                      ..++||.+||++|.-+.+|+..   +..+   +.++.. +..++|    ..-|+   +.+....+...++     .+ ++
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i---~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~  121 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKI---TTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ  121 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEE---EEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceE---EEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence            3579999999999988888852   3343   333444 444444    33344   3333322222222     22 58


Q ss_pred             cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH----------------HHHHHHHHHHHhCCceeeee--
Q 017983          283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL----------------EMINKLKPVLHSLQWSTNIY--  344 (363)
Q Consensus       283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~----------------~~~~~i~~l~~~l~W~~~~~--  344 (363)
                      ||+|+...-      +.+...++..+.+.|||||.+++-+..                .+.+..+.+.+.=+.+..+.  
T Consensus       122 fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi  195 (205)
T PF01596_consen  122 FDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI  195 (205)
T ss_dssp             EEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS
T ss_pred             eeEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe
Confidence            999998742      334567888899999999999887431                12233344444445555544  


Q ss_pred             cceEEEEEec
Q 017983          345 HDQFLVGKKG  354 (363)
Q Consensus       345 ~~~~li~~K~  354 (363)
                      .+.+++++|+
T Consensus       196 gdGl~l~~K~  205 (205)
T PF01596_consen  196 GDGLTLARKR  205 (205)
T ss_dssp             TTEEEEEEE-
T ss_pred             CCeeEEEEEC
Confidence            7889999885

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.68  E-value=8.9e-05  Score=69.54  Aligned_cols=127  Identities=20%  Similarity=0.288  Sum_probs=81.0

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh-cCce------ee--------ecccc
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD-RGLI------GM--------YHDWC  273 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~-Rgl~------~~--------~~d~~  273 (363)
                      |++.++..  ...+||+-|||.|.-+.+|+++|.   +|+++|.+ ..++.+++ +++.      ..        +.=+|
T Consensus        29 ~~~~l~~~--~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~  103 (218)
T PF05724_consen   29 YLDSLALK--PGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC  103 (218)
T ss_dssp             HHHHHTTS--TSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred             HHHhcCCC--CCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence            45444333  345899999999999999999874   57888998 66776644 3331      00        01112


Q ss_pred             ccCCCCC----CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEE--EcCH----------HHHHHHHHHHHhC
Q 017983          274 ESFNTYP----RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV--QDTL----------EMINKLKPVLHSL  337 (363)
Q Consensus       274 e~~lpfp----~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii--~D~~----------~~~~~i~~l~~~l  337 (363)
                      ..+..++    +.||+|.=..+|.-++ +....+...-|.++|||||.+++  .+..          -..++|.++.. -
T Consensus       104 gDfF~l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~  181 (218)
T PF05724_consen  104 GDFFELPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-P  181 (218)
T ss_dssp             S-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-T
T ss_pred             cccccCChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-C
Confidence            2344433    5699999888888775 45678999999999999999333  2210          12466777665 5


Q ss_pred             Cceeee
Q 017983          338 QWSTNI  343 (363)
Q Consensus       338 ~W~~~~  343 (363)
                      .|++..
T Consensus       182 ~f~i~~  187 (218)
T PF05724_consen  182 GFEIEE  187 (218)
T ss_dssp             TEEEEE
T ss_pred             CcEEEE
Confidence            665443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.65  E-value=0.00016  Score=69.95  Aligned_cols=130  Identities=17%  Similarity=0.258  Sum_probs=83.9

Q ss_pred             hccccchhHHHHHHHhhhhcc-ccCCCCCceEEEeccccc----HHHHHhhcCCC----eEEEEeecCCc-chHHHHHh-
Q 017983          194 AFNKDTTHWYALVSDVYVGGL-AINWSSVRNVMDMNASYG----GFAAALIDQPL----WVMNVVPIDAP-DTLSIIFD-  262 (363)
Q Consensus       194 ~F~~~~~~W~~~~~~~y~~~l-~i~~~~~r~VLDvGCG~G----~faa~L~~~~v----~v~~v~~~d~s-~~L~~a~~-  262 (363)
                      .|=.+.++|.....+ -+..+ .-..++.-+|.-+||+||    ++|..|.+...    +.+.|.++|.+ ..|+.|.. 
T Consensus        70 ~FFR~~~~f~~l~~~-v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G  148 (268)
T COG1352          70 EFFRDPEHFEELRDE-VLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG  148 (268)
T ss_pred             hhccCcHHHHHHHHH-HHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence            344666666554432 22111 111123568999999999    46666665432    35678999988 67765521 


Q ss_pred             --------cCc---------------------------eeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHH
Q 017983          263 --------RGL---------------------------IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVE  307 (363)
Q Consensus       263 --------Rgl---------------------------~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~E  307 (363)
                              +|+                           .--.|+.-+ ..|+++-||+|+|..|+.++... .-.+++..
T Consensus       149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~-~~~~~~~fD~IfCRNVLIYFd~~-~q~~il~~  226 (268)
T COG1352         149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLD-DSPFLGKFDLIFCRNVLIYFDEE-TQERILRR  226 (268)
T ss_pred             CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCC-CccccCCCCEEEEcceEEeeCHH-HHHHHHHH
Confidence                    222                           012344222 23366999999999999998643 45789999


Q ss_pred             HhHhccCCeEEEEEcCHHH
Q 017983          308 MDRILRPGGYVLVQDTLEM  326 (363)
Q Consensus       308 m~RVLRPGG~lii~D~~~~  326 (363)
                      ++..|+|||++++..+..+
T Consensus       227 f~~~L~~gG~LflG~sE~~  245 (268)
T COG1352         227 FADSLKPGGLLFLGHSETI  245 (268)
T ss_pred             HHHHhCCCCEEEEccCccc
Confidence            9999999999999876443

>PLN02672 methionine S-methyltransferase

Probab=97.64  E-value=0.00026  Score=79.87  Aligned_cols=116  Identities=13%  Similarity=0.164  Sum_probs=74.1

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-------------------c---eeee-ccccccCC
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------------------L---IGMY-HDWCESFN  277 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-------------------l---~~~~-~d~~e~~l  277 (363)
                      .+|||+|||+|.++..|+...-. ..|+++|.+ ++++.|.+..                   +   +.++ .|+.+   
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~---  195 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG---  195 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh---
Confidence            48999999999999999875211 257888988 7776663221                   1   2223 34322   


Q ss_pred             CCC---CCcceeeecc--------------cccccc-----------c-------cCC---HHHHHHHHhHhccCCeEEE
Q 017983          278 TYP---RTYDLLHSSF--------------LLSDVT-----------Q-------RCD---IADVAVEMDRILRPGGYVL  319 (363)
Q Consensus       278 pfp---~sFDlVh~~~--------------~l~~~~-----------~-------~~~---~~~~L~Em~RVLRPGG~li  319 (363)
                      +++   ..||+|+++=              +..|-+           .       .++   +..++.+..++|||||+++
T Consensus       196 ~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~  275 (1082)
T PLN02672        196 YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI  275 (1082)
T ss_pred             hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence            233   2699999861              110100           0       111   2678899999999999999


Q ss_pred             EEcCHHHHHHHH-HHHHhCCcee
Q 017983          320 VQDTLEMINKLK-PVLHSLQWST  341 (363)
Q Consensus       320 i~D~~~~~~~i~-~l~~~l~W~~  341 (363)
                      +--..+.-+.+. ++..+..|+.
T Consensus       276 lEiG~~q~~~v~~~l~~~~gf~~  298 (1082)
T PLN02672        276 FNMGGRPGQAVCERLFERRGFRI  298 (1082)
T ss_pred             EEECccHHHHHHHHHHHHCCCCe
Confidence            876666666777 5777766643

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00025  Score=66.17  Aligned_cols=98  Identities=19%  Similarity=0.236  Sum_probs=63.6

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC--
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP--  280 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp--  280 (363)
                      .++.|.++++  .+||+||||+|..+|-|++....   |..++.- ...+.|.++    |+  +.+.+...  ..-||  
T Consensus        64 m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~~---V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG--~~G~~~~  136 (209)
T COG2518          64 MLQLLELKPG--DRVLEIGTGSGYQAAVLARLVGR---VVSIERIEELAEQARRNLETLGYENVTVRHGDG--SKGWPEE  136 (209)
T ss_pred             HHHHhCCCCC--CeEEEECCCchHHHHHHHHHhCe---EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc--ccCCCCC
Confidence            3444555554  69999999999999999885433   3344433 333444332    33  44444432  34566  


Q ss_pred             CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          281 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       281 ~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ..||.|+.......++.      .   +.+-|||||.+++-..
T Consensus       137 aPyD~I~Vtaaa~~vP~------~---Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         137 APYDRIIVTAAAPEVPE------A---LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCcCEEEEeeccCCCCH------H---HHHhcccCCEEEEEEc
Confidence            89999999988887653      2   2346999999998644

>PRK06202 hypothetical protein; Provisional

Probab=97.62  E-value=6.5e-05  Score=70.09  Aligned_cols=70  Identities=13%  Similarity=0.179  Sum_probs=54.4

Q ss_pred             cCCCCHHHHHHHHHcC--CCceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEE
Q 017983            5 PKDEHEAQIQFALERG--IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         5 p~D~~~~qvq~A~erg--~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s   76 (363)
                      --|.++.+++.|+++.  -.+.+.+.++..+|+++++||+|+|+.+++|..++. ..+|.|+.|++|  |.+++.
T Consensus        93 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~  165 (232)
T PRK06202         93 AIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHN  165 (232)
T ss_pred             EEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence            3589999999999873  224455566778899999999999999998876532 469999999999  455554

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.62  E-value=6.8e-06  Score=66.15  Aligned_cols=66  Identities=24%  Similarity=0.327  Sum_probs=35.5

Q ss_pred             CCCHHHHHHHHHc----CC-CceeeecccCCC--CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEE
Q 017983            7 DEHEAQIQFALER----GI-PAILSVIGTQKL--TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFF   73 (363)
Q Consensus         7 D~~~~qvq~A~er----g~-p~~~~~~~~~~L--Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~   73 (363)
                      |+|+.+++.|++|    +. ...........+  +.+.++||+|+++.+++|+ ++...++..+.++|||||.|
T Consensus        27 D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   27 DISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---S-HHHHHHHHTTT-TSS-EE
T ss_pred             ECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-hhHHHHHHHHHHHcCCCCCC
Confidence            6777777666555    21 112222222222  2223699999999888887 55678999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.59  E-value=5e-05  Score=70.28  Aligned_cols=72  Identities=24%  Similarity=0.334  Sum_probs=50.3

Q ss_pred             CCCCHHHHHHHHHc--CCC-ceeeecccCCCCCCCCCccEEEeCCccccccc--CCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER--GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA--QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er--g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~--~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|+++..|+.|++|  +.+ +.+.+.+... .+|.+.||+|++|.++..+.+  +...++..+...|+|||.|++...
T Consensus        71 vDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen   71 VDISPRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            48999999999999  545 3344444322 468999999999999977764  234688999999999999999754

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00071  Score=64.80  Aligned_cols=116  Identities=22%  Similarity=0.208  Sum_probs=71.9

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Ccee----eeccccccCCCCCCCc
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYPRTY  283 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~~----~~~d~~e~~lpfp~sF  283 (363)
                      .+++.+|  .+|||.|.|+|.++++|+..-.-...|+..+.. +.++.|.+.    |+..    ...|-++  .-+++.|
T Consensus        89 ~~gi~pg--~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~--~~~~~~v  164 (256)
T COG2519          89 RLGISPG--SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE--GIDEEDV  164 (256)
T ss_pred             HcCCCCC--CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc--ccccccc
Confidence            4566665  499999999999999998521111234445554 455555443    4321    2234333  2234799


Q ss_pred             ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCce
Q 017983          284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWS  340 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~  340 (363)
                      |+|+..     ++   ++-++|.-++.+|+|||.+++-- ..+.+.+.-+-++..+|.
T Consensus       165 Dav~LD-----mp---~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~  214 (256)
T COG2519         165 DAVFLD-----LP---DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV  214 (256)
T ss_pred             CEEEEc-----CC---ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence            998864     23   34679999999999999988753 444444444444444663

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.55  E-value=7.9e-05  Score=72.15  Aligned_cols=70  Identities=11%  Similarity=0.195  Sum_probs=53.3

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.|+.+++.|+++    ++.+.+...+....++ +++||+|+|+.++++... +...++.++.|+|||||++++.
T Consensus       148 vD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        148 VDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             EECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            37888888877544    6666666667666666 689999999988866542 2357999999999999997664

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.54  E-value=7e-05  Score=61.02  Aligned_cols=70  Identities=20%  Similarity=0.319  Sum_probs=51.6

Q ss_pred             CCCHHHHHHHHHcC------CCceeeeccc-CCCCCCCCCccEEEeCC-ccccccc--CCCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFALERG------IPAILSVIGT-QKLTFPDDAYDLIHCAR-CRVHWDA--QGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A~erg------~p~~~~~~~~-~~LPfpd~sFD~v~cs~-~~~~~~~--~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      |.++.+++.|+++-      -.+.+...++ ....+. ..||+|+|+. +++++..  +...+|.++.+.|||||+|+++
T Consensus        32 D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   32 DISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             ESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            78899999998773      3355666666 334444 4599999988 5544432  2456899999999999999997


Q ss_pred             e
Q 017983           77 A   77 (363)
Q Consensus        77 ~   77 (363)
                      .
T Consensus       111 ~  111 (112)
T PF12847_consen  111 T  111 (112)
T ss_dssp             E
T ss_pred             E
Confidence            5

...

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.52  E-value=0.00016  Score=69.49  Aligned_cols=92  Identities=14%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             eecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEE
Q 017983           26 SVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKA  105 (363)
Q Consensus        26 ~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~  105 (363)
                      .+.+..++|.+|+|.|+++|.+++.-  -+...++.|++|||||||.|.+.--  ....++.    .....-...|++..
T Consensus       215 ~~cDm~~vPl~d~svDvaV~CLSLMg--tn~~df~kEa~RiLk~gG~l~IAEv--~SRf~dv----~~f~r~l~~lGF~~  286 (325)
T KOG3045|consen  215 IACDMRNVPLEDESVDVAVFCLSLMG--TNLADFIKEANRILKPGGLLYIAEV--KSRFSDV----KGFVRALTKLGFDV  286 (325)
T ss_pred             eeccccCCcCccCcccEEEeeHhhhc--ccHHHHHHHHHHHhccCceEEEEeh--hhhcccH----HHHHHHHHHcCCee
Confidence            34456779999999999998666533  3445799999999999999998621  1122222    22444556788888


Q ss_pred             EEEecCCCceeEEEEecCCC
Q 017983          106 VARSVDSNRIGFVIYQKPVS  125 (363)
Q Consensus       106 ~~~~~~~~~~~~~i~~k~~~  125 (363)
                      .........--+-.|+|+..
T Consensus       287 ~~~d~~n~~F~lfefkK~~~  306 (325)
T KOG3045|consen  287 KHKDVSNKYFTLFEFKKTPK  306 (325)
T ss_pred             eehhhhcceEEEEEEecCCc
Confidence            77665444444566777643

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.52  E-value=8.8e-05  Score=75.08  Aligned_cols=70  Identities=21%  Similarity=0.317  Sum_probs=54.0

Q ss_pred             CCCCHHHHHHHHHc--CCCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER--GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er--g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.|++.|.++  +..+.+...+...+   +++||+|+|...++|... +...++.++.|+|||||+++++..
T Consensus       196 iDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        196 VTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             EeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            38899999999987  44445555555544   589999999887777643 235799999999999999999854

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.50  E-value=0.00015  Score=66.82  Aligned_cols=72  Identities=26%  Similarity=0.363  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeeccc-CCCC--CCCCCccEEEeCCcccccccC--------CCchhhhhcccccC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGT-QKLT--FPDDAYDLIHCARCRVHWDAQ--------GGKPLLELNRILRP   69 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~-~~LP--fpd~sFD~v~cs~~~~~~~~~--------~~~~l~E~~RVLrP   69 (363)
                      -|.++.+++.|.++    +.+ +.+.+.++ +.++  |++++||+|++..+. +|...        ...+|.++.|+|||
T Consensus        70 VD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~-p~~~~~~~~~~~~~~~~l~~i~~~Lkp  148 (202)
T PRK00121         70 IEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD-PWPKKRHHKRRLVQPEFLALYARKLKP  148 (202)
T ss_pred             EEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC-CCCCccccccccCCHHHHHHHHHHcCC
Confidence            47889999988764    443 55666777 7787  899999999987653 45321        23589999999999


Q ss_pred             CeEEEEEeC
Q 017983           70 GGFFIWSAT   78 (363)
Q Consensus        70 GG~~~~s~~   78 (363)
                      ||+|+++.+
T Consensus       149 gG~l~i~~~  157 (202)
T PRK00121        149 GGEIHFATD  157 (202)
T ss_pred             CCEEEEEcC
Confidence            999999866

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.49  E-value=0.00057  Score=66.76  Aligned_cols=126  Identities=17%  Similarity=0.209  Sum_probs=87.3

Q ss_pred             CCCceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-ch----HHHHHhcCcee---eeccccccCCCCC---CCccee
Q 017983          219 SSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DT----LSIIFDRGLIG---MYHDWCESFNTYP---RTYDLL  286 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~----L~~a~~Rgl~~---~~~d~~e~~lpfp---~sFDlV  286 (363)
                      +..-+||||.||.|.+...... .+....++.-.|.+ ..    -+.+.+||+..   +....|-..-.|.   -..+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            5567999999999986554443 33223345556665 22    35788889833   2233232222233   456999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEc--CHHHHHHHHHHHHh----CCceeeee
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD--TLEMINKLKPVLHS----LQWSTNIY  344 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i~~l~~~----l~W~~~~~  344 (363)
                      +.+.+++.+++...+...|.-+.+.|.|||++|.+-  -+..++.|...+.+    .-|-++..
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR  277 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR  277 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence            999999999987777889999999999999999996  35567777777755    46877654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.44  E-value=0.00037  Score=62.75  Aligned_cols=120  Identities=19%  Similarity=0.224  Sum_probs=61.2

Q ss_pred             cchhHHHHHH-Hhhhhcc-----ccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCcc---hHHHHHhcC---
Q 017983          198 DTTHWYALVS-DVYVGGL-----AINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPD---TLSIIFDRG---  264 (363)
Q Consensus       198 ~~~~W~~~~~-~~y~~~l-----~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s~---~L~~a~~Rg---  264 (363)
                      ....|..... ..|+...     ........+||++|||+|-.+..++.. +.  ..|+..|.++   .+....++.   
T Consensus        17 G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~~l~~l~~Ni~~N~~~   94 (173)
T PF10294_consen   17 GGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNEVLELLRRNIELNGSL   94 (173)
T ss_dssp             ------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S-HHHHHHHHHHTT---
T ss_pred             cEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCC--ceEEEeccchhhHHHHHHHHhcccc
Confidence            4567765332 1355431     112234579999999999666555554 21  1344555443   233322221   


Q ss_pred             ---c-eeeeccccccC-CC-CC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          265 ---L-IGMYHDWCESF-NT-YP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       265 ---l-~~~~~d~~e~~-lp-fp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                         - .....+|.+.. .. .. +.||+|+++.++-.   ....+.++.=+.++|+|+|.+++..
T Consensus        95 ~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen   95 LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             -----EEEE--TTS-HHHHHHS-SSBSEEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             ccccccCcEEEecCcccccccccccCCEEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence               1 22345776531 11 23 78999999999873   3456788899999999999988864

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.42  E-value=0.00046  Score=65.87  Aligned_cols=100  Identities=10%  Similarity=0.155  Sum_probs=63.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc---------e------------------------
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---------I------------------------  266 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl---------~------------------------  266 (363)
                      ...+|||||..|.+.+.+++.-. ..-+.++|+. ..++.|.+..-         .                        
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            34799999999999999987521 1224555554 34444443310         0                        


Q ss_pred             -------------eeeccccccCCCCC-CCcceeeecccc--cccc-ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          267 -------------GMYHDWCESFNTYP-RTYDLLHSSFLL--SDVT-QRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       267 -------------~~~~d~~e~~lpfp-~sFDlVh~~~~l--~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                                   ..+.+. ..+|-+. +.||+|.|-.+=  .|+. ..+++..++.-+.|.|+|||++++--
T Consensus       138 t~~~p~n~~f~~~n~vle~-~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLES-DDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             cccCCcchhcccccEEEec-chhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                         001110 1244455 889999986442  2543 33568899999999999999999864

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.41  E-value=0.00047  Score=69.49  Aligned_cols=108  Identities=13%  Similarity=0.194  Sum_probs=67.1

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      .+|||++||+|.|+..++..+.   .|+++|.+ .+++.+.+.    |+  +..+....+..++-. +.||+|++.   .
T Consensus       235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D---P  308 (374)
T TIGR02085       235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN---P  308 (374)
T ss_pred             CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC---C
Confidence            5899999999999999997653   46777877 677655543    22  222322222223222 569999887   2


Q ss_pred             cccccCCH-HHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCceee
Q 017983          294 DVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTN  342 (363)
Q Consensus       294 ~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~  342 (363)
                         .+.++ ..++..+. -++|++.++++-... ....++.|   -.|+..
T Consensus       309 ---Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~  352 (374)
T TIGR02085       309 ---PRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIE  352 (374)
T ss_pred             ---CCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence               22232 34445554 489999999986654 44556666   246544

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.41  E-value=8.7e-05  Score=68.41  Aligned_cols=67  Identities=21%  Similarity=0.301  Sum_probs=55.2

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCCC-CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQKL-TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~L-Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      ++++..|..+.+||+++.-..++. .| -|||+|||.|++|..+.+... +..+|.||.||   |...++|-|
T Consensus        43 Eid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~VIlsqtLQ~~~~-P~~vL~EmlRV---gr~~IVsFP  110 (193)
T PF07021_consen   43 EIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSFDYVILSQTLQAVRR-PDEVLEEMLRV---GRRAIVSFP  110 (193)
T ss_pred             ecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCccEEehHhHHHhHhH-HHHHHHHHHHh---cCeEEEEec
Confidence            578889999999999866665554 46 499999999999999988764 77899999777   667888876

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.40  E-value=0.00046  Score=63.89  Aligned_cols=97  Identities=8%  Similarity=0.116  Sum_probs=56.0

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      .+|||+|||+|.++..++.++.  ..|+.++.+ ..++.+.+.    |+  +.++...+...++.. +.||+|++.   .
T Consensus        55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~D---P  129 (199)
T PRK10909         55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVD---P  129 (199)
T ss_pred             CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEEC---C
Confidence            5899999999999986544432  245666666 444433321    22  233333333334434 679999987   2


Q ss_pred             cccccCCHHHHHHHHhH--hccCCeEEEEEcCH
Q 017983          294 DVTQRCDIADVAVEMDR--ILRPGGYVLVQDTL  324 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~R--VLRPGG~lii~D~~  324 (363)
                      .+.. .-.+.++.-+..  +|+|+|.+++.-..
T Consensus       130 Py~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        130 PFRK-GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             CCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            2211 112344444433  47999999988543

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.40  E-value=1.1e-05  Score=72.09  Aligned_cols=52  Identities=27%  Similarity=0.395  Sum_probs=45.8

Q ss_pred             cCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeCCCC
Q 017983           30 TQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        30 ~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      ...++|.|+|.|+|.|..++.|.+-+ ...+++|.+|+|||||+|-+++|...
T Consensus        38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~   90 (185)
T COG4627          38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK   90 (185)
T ss_pred             hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence            55689999999999999999998754 45799999999999999999999653

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.37  E-value=0.00046  Score=71.38  Aligned_cols=127  Identities=18%  Similarity=0.236  Sum_probs=70.1

Q ss_pred             CchhhccccchhHHHHHHH--hhhhccccCCC----CCceEEEecccccHHHHHhhcCC---CeEEEEeecCCc-c---h
Q 017983          190 DSEEAFNKDTTHWYALVSD--VYVGGLAINWS----SVRNVMDMNASYGGFAAALIDQP---LWVMNVVPIDAP-D---T  256 (363)
Q Consensus       190 ~~~e~F~~~~~~W~~~~~~--~y~~~l~i~~~----~~r~VLDvGCG~G~faa~L~~~~---v~v~~v~~~d~s-~---~  256 (363)
                      .+-|.|++|..+-..+-..  ..+.... ...    ....|||+|||+|-+....+..+   .....|.++..+ +   +
T Consensus       151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~-~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~  229 (448)
T PF05185_consen  151 QTYEVFEKDPVKYDQYERAIEEALKDRV-RKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT  229 (448)
T ss_dssp             HHHHHHCC-HHHHHHHHHHHHHHHHHHH-TTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred             ccHhhHhcCHHHHHHHHHHHHHHHHhhh-hhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence            4678999988877654432  1222111 111    13579999999998753332211   012235555554 2   2


Q ss_pred             HH-HHHhcCc---eeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEE
Q 017983          257 LS-IIFDRGL---IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL  319 (363)
Q Consensus       257 L~-~a~~Rgl---~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~li  319 (363)
                      ++ .+...|.   +.+++...+. ..-|...|+|++..+=+ +...+.+...|.-.+|.|||||.++
T Consensus       230 l~~~v~~n~w~~~V~vi~~d~r~-v~lpekvDIIVSElLGs-fg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  230 LQKRVNANGWGDKVTVIHGDMRE-VELPEKVDIIVSELLGS-FGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             HHHHHHHTTTTTTEEEEES-TTT-SCHSS-EEEEEE---BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             HHHHHHhcCCCCeEEEEeCcccC-CCCCCceeEEEEeccCC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence            32 2233333   6677765443 44568999999865544 4455567788999999999999754

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.37  E-value=4.2e-05  Score=68.35  Aligned_cols=47  Identities=21%  Similarity=0.370  Sum_probs=41.3

Q ss_pred             ccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          274 ESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       274 e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ...++|. ||.|+|.|.++++|+.-. .-..+++|.+|+|||||++-|.
T Consensus        38 s~e~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          38 SNESMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             hhhccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence            3458898 999999999999999754 3468999999999999999997

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.35  E-value=0.0012  Score=62.27  Aligned_cols=128  Identities=16%  Similarity=0.262  Sum_probs=79.3

Q ss_pred             CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHh----cCc---eeeec--cccccCCCCC-CCcceee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD----RGL---IGMYH--DWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~----Rgl---~~~~~--d~~e~~lpfp-~sFDlVh  287 (363)
                      ..++||.+|.+.|.-+..|+.. +-.. .++.++.. ++.+.|++    -|+   +..+.  |+-+...-.. .+||+|+
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF  137 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF  137 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence            4579999999999888887752 1011 25555665 55555543    243   22222  4332212145 9999999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcC--------------HHHHHHHHHHHHhCCce----eeee--cce
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT--------------LEMINKLKPVLHSLQWS----TNIY--HDQ  347 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~--------------~~~~~~i~~l~~~l~W~----~~~~--~~~  347 (363)
                      ...      ++.+..+++.+.-+.|||||.+++-+.              ......++.....+.++    ....  .+.
T Consensus       138 IDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDG  211 (219)
T COG4122         138 IDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDG  211 (219)
T ss_pred             EeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCc
Confidence            762      334456799999999999998877531              12344456655555554    3333  488


Q ss_pred             EEEEEec
Q 017983          348 FLVGKKG  354 (363)
Q Consensus       348 ~li~~K~  354 (363)
                      ++++.|.
T Consensus       212 l~v~~k~  218 (219)
T COG4122         212 LLLSRKR  218 (219)
T ss_pred             eEEEeec
Confidence            9998885

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.34  E-value=0.00029  Score=69.61  Aligned_cols=93  Identities=17%  Similarity=0.170  Sum_probs=65.0

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCC-----ccc--ccc-cCCCchhhhhcccccCCeE
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCAR-----CRV--HWD-AQGGKPLLELNRILRPGGF   72 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~-----~~~--~~~-~~~~~~l~E~~RVLrPGG~   72 (363)
                      -|+++.+++.|++.    |++ +.+...++..+|+++++||+|+|.-     ...  +.. +....+|.++.|+|||||+
T Consensus       210 ~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~  289 (329)
T TIGR01177       210 CDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGW  289 (329)
T ss_pred             EcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcE
Confidence            48888888877654    655 3667788899999999999999941     110  100 0024689999999999999


Q ss_pred             EEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEec
Q 017983           73 FIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSV  110 (363)
Q Consensus        73 ~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~  110 (363)
                      +++..|.-.           .++.+++...| .+.++.
T Consensus       290 lv~~~~~~~-----------~~~~~~~~~g~-i~~~~~  315 (329)
T TIGR01177       290 IVYAVPTRI-----------DLESLAEDAFR-VVKRFE  315 (329)
T ss_pred             EEEEEcCCC-----------CHHHHHhhcCc-chheee
Confidence            999987321           34456777778 555543

This family is found exclusively in the Archaea.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.34  E-value=0.00032  Score=69.77  Aligned_cols=96  Identities=20%  Similarity=0.282  Sum_probs=60.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchH----HHHHhcCc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTL----SIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L----~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      .+.|||+|||+|.+...-++.|.  ..|.+++.|++.    +++..-++   +.++..-.|. +-.| ...|+|++.++=
T Consensus        61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEd-i~LP~eKVDiIvSEWMG  137 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVED-IELPVEKVDIIVSEWMG  137 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEE-EecCccceeEEeehhhh
Confidence            46999999999988777666653  245666666444    44555554   3333322222 2345 999999986543


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVL  319 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~li  319 (363)
                      .-+-....+..+|--=+|-|+|||.++
T Consensus       138 y~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  138 YFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            322111235667777899999999754

>PLN03075 nicotianamine synthase; Provisional

Probab=97.31  E-value=0.00024  Score=69.68  Aligned_cols=107  Identities=17%  Similarity=0.238  Sum_probs=73.1

Q ss_pred             CCCCHHHHHHHHHc-----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccc-cCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER-----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWD-AQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er-----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~-~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.++..++.|++.     |+.  +.+...++..++-..+.||+|+|. ++|+|. .+...+|..+.|+|||||+|++..
T Consensus       155 iD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        155 FDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            48899999988864     332  555666665554335789999999 999995 456789999999999999999985


Q ss_pred             CC-----CCC-CChhhHHHHHHHHHHHhhcceEEEEEecCCCc--eeEEEEecCCC
Q 017983           78 TP-----VYR-HDDRHRSVWNAMVNLTESMCWKAVARSVDSNR--IGFVIYQKPVS  125 (363)
Q Consensus        78 ~~-----~~~-~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~--~~~~i~~k~~~  125 (363)
                      .-     .|. -+++         ++  + .|+.....|-.+.  ..+.|.+|+..
T Consensus       234 ~~G~r~~LYp~v~~~---------~~--~-gf~~~~~~~P~~~v~Nsvi~~r~~~~  277 (296)
T PLN03075        234 AHGARAFLYPVVDPC---------DL--R-GFEVLSVFHPTDEVINSVIIARKPGG  277 (296)
T ss_pred             ccchHhhcCCCCChh---------hC--C-CeEEEEEECCCCCceeeEEEEEeecC
Confidence            31     121 1121         11  2 8888887764333  25666677543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.31  E-value=8.7e-05  Score=70.26  Aligned_cols=70  Identities=24%  Similarity=0.346  Sum_probs=60.7

Q ss_pred             CCCCHHHHHHHHHc---CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER---GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er---g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.|..++|.++..   ++...-.+.+-+.|||.+++||+|++|..+ ||..|...-+..+.-.|||.|.|+.|
T Consensus       101 ~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  101 MDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             eecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hhhccCchHHHHHHHhcCCCccchhH
Confidence            47888999998876   455556677889999999999999999877 99988778999999999999999887

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.30  E-value=0.00025  Score=65.90  Aligned_cols=72  Identities=18%  Similarity=0.325  Sum_probs=55.8

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|.++    +..+.+...+...++ .+++.||+|+|+.++.|.. +...+|.++.|+|+|||+++++.+
T Consensus        76 iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134         76 IDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP-DPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             EcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccC-CHHHHHHHHHHHcCCCcEEEEEec
Confidence            37788888888875    444555555655554 5668999999998887765 356789999999999999999866

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.30  E-value=0.0015  Score=63.38  Aligned_cols=115  Identities=17%  Similarity=0.291  Sum_probs=78.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chH---HHHHhc----Cc---------------------------
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTL---SIIFDR----GL---------------------------  265 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L---~~a~~R----gl---------------------------  265 (363)
                      .-+||==|||.|.++-.++..+..   +.+.+.| -||   .++.+.    +-                           
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~---~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYA---VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccce---EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            458999999999999999998754   4566666 454   233332    10                           


Q ss_pred             -------------eeeeccccccCCCCC-----CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE------
Q 017983          266 -------------IGMYHDWCESFNTYP-----RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ------  321 (363)
Q Consensus       266 -------------~~~~~d~~e~~lpfp-----~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~------  321 (363)
                                   .-..+|..+-   |+     ++||.|++.+.+--   ..++.+.|..|.++|||||++|=.      
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~---y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh  207 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEV---YGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEHLLKPGGYWINFGPLLYH  207 (270)
T ss_pred             cCcccccCCCCceeEecCccEEe---cCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHHHhccCCEEEecCCcccc
Confidence                         0011222221   23     49999988855542   346889999999999999965532      


Q ss_pred             --cC-------HH-HHHHHHHHHHhCCceeeee
Q 017983          322 --DT-------LE-MINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       322 --D~-------~~-~~~~i~~l~~~l~W~~~~~  344 (363)
                        +.       .+ .+++|+.+++.+.|+...+
T Consensus       208 ~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~  240 (270)
T PF07942_consen  208 FEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE  240 (270)
T ss_pred             CCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence              32       22 4799999999999998765

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.25  E-value=0.0025  Score=61.88  Aligned_cols=121  Identities=20%  Similarity=0.344  Sum_probs=70.3

Q ss_pred             cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc-------Cceeee
Q 017983          198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR-------GLIGMY  269 (363)
Q Consensus       198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R-------gl~~~~  269 (363)
                      +++.|...|.+ -+.+..  ......+||+|||+|..+..|+..=.. ..++++|.| ..+..|.+.       |-+.+.
T Consensus       129 ETEE~V~~Vid-~~~~~~--~~~~~~ildlgtGSGaIslsll~~L~~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~  204 (328)
T KOG2904|consen  129 ETEEWVEAVID-ALNNSE--HSKHTHILDLGTGSGAISLSLLHGLPQ-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI  204 (328)
T ss_pred             cHHHHHHHHHH-HHhhhh--hcccceEEEecCCccHHHHHHHhcCCC-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence            45778887765 232221  111238999999999998888763111 135677777 555544443       224444


Q ss_pred             cccc--ccCCCCC---CCcceeeec--cccc------------ccc---------ccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          270 HDWC--ESFNTYP---RTYDLLHSS--FLLS------------DVT---------QRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       270 ~d~~--e~~lpfp---~sFDlVh~~--~~l~------------~~~---------~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |...  +...|++   +.+|+++|+  ++.+            |-+         -...+..+..=.-|.|+|||++.+.
T Consensus       205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le  284 (328)
T KOG2904|consen  205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE  284 (328)
T ss_pred             ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence            3211  2245554   999999986  1111            100         0011344556678999999999987


Q ss_pred             c
Q 017983          322 D  322 (363)
Q Consensus       322 D  322 (363)
                      -
T Consensus       285 ~  285 (328)
T KOG2904|consen  285 L  285 (328)
T ss_pred             e
Confidence            3

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.22  E-value=0.00034  Score=64.31  Aligned_cols=71  Identities=18%  Similarity=0.338  Sum_probs=55.0

Q ss_pred             CCCHHHHHHHHHc----CC-CceeeecccCCCCCC-CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GI-PAILSVIGTQKLTFP-DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~-p~~~~~~~~~~LPfp-d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.++..|+++    ++ ...+...+++.++++ .++||+|+|+.+++|.. +...+|.++.++|+|||+++++.+
T Consensus        74 D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983        74 DASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVP-DPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             eCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence            6788888888775    44 355555666666655 48999999988876655 466899999999999999999865

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.21  E-value=0.00084  Score=65.19  Aligned_cols=69  Identities=17%  Similarity=0.144  Sum_probs=49.3

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    ++...+.......++++++.||+|+|.....+    ...++.++.|+|||||+|++|+.
T Consensus       188 vDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~----l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       188 IDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV----IKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             EECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH----HHHHHHHHHHHcCCCcEEEEEeC
Confidence            48899999998876    33322222222235667889999999754322    23688999999999999999986

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.20  E-value=0.00057  Score=62.39  Aligned_cols=72  Identities=18%  Similarity=0.279  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCC---CCCCCccEEEeCCcccccccCC--------CchhhhhcccccC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT---FPDDAYDLIHCARCRVHWDAQG--------GKPLLELNRILRP   69 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP---fpd~sFD~v~cs~~~~~~~~~~--------~~~l~E~~RVLrP   69 (363)
                      -|.++.+++.|.++    |+. +.+...++..++   +++++||.|++... .||+...        ..++.++.|+|||
T Consensus        46 vD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p-dpw~k~~h~~~r~~~~~~l~~~~r~Lkp  124 (194)
T TIGR00091        46 IEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP-DPWPKKRHNKRRITQPHFLKEYANVLKK  124 (194)
T ss_pred             EEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-CcCCCCCccccccCCHHHHHHHHHHhCC
Confidence            36778888777654    454 455556666554   67889999998643 4665321        2489999999999


Q ss_pred             CeEEEEEeC
Q 017983           70 GGFFIWSAT   78 (363)
Q Consensus        70 GG~~~~s~~   78 (363)
                      ||.|++++.
T Consensus       125 gG~l~~~td  133 (194)
T TIGR00091       125 GGVIHFKTD  133 (194)
T ss_pred             CCEEEEEeC
Confidence            999999866

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02823 spermine synthase

Probab=97.19  E-value=0.0009  Score=66.80  Aligned_cols=100  Identities=16%  Similarity=0.197  Sum_probs=63.0

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----------eeeeccccccCCCCC-CCcceee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----------IGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----------~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      ..++||-+|+|.|+.+.++++++. +..++.++.. ++++++.+.-.          +.++.+.+-.++.-. ++||+|+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            457999999999999998887531 2345566666 57777765321          222332233344444 7999999


Q ss_pred             ecccccccc-ccC---CHHHHHH-HHhHhccCCeEEEEE
Q 017983          288 SSFLLSDVT-QRC---DIADVAV-EMDRILRPGGYVLVQ  321 (363)
Q Consensus       288 ~~~~l~~~~-~~~---~~~~~L~-Em~RVLRPGG~lii~  321 (363)
                      +.. ..... ..+   --..++. .+.|.|+|||.+++.
T Consensus       182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            873 22110 000   0135676 899999999998875

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.19  E-value=0.00089  Score=60.85  Aligned_cols=66  Identities=15%  Similarity=0.250  Sum_probs=47.9

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.+++.|.+.    |++ +.+...+++.++ ++++||+|+|.. . +   +...++.++.|+|||||.+++...
T Consensus        73 D~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-~---~~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138        73 ESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-A---SLNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             eCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-h---CHHHHHHHHHHhcCCCCEEEEEcC
Confidence            7788877766543    665 555666677775 368999998853 2 2   223588899999999999999855

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.15  E-value=0.00084  Score=64.69  Aligned_cols=65  Identities=11%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC---ceeeeccccccCCCCCC-Ccceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG---LIGMYHDWCESFNTYPR-TYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg---l~~~~~d~~e~~lpfp~-sFDlVh~~  289 (363)
                      ..+|||+|||+|.++..|++++.   .|+++|.+ +|++.+.++.   -+.+++.... .++++. .+|.|+++
T Consensus        43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~-~~~~~~~~~~~vv~N  112 (272)
T PRK00274         43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDAL-KVDLSELQPLKVVAN  112 (272)
T ss_pred             cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhh-cCCHHHcCcceEEEe
Confidence            35899999999999999998753   46788888 8888887653   2333332222 245552 26888876

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.14  E-value=0.0024  Score=61.78  Aligned_cols=120  Identities=15%  Similarity=0.165  Sum_probs=75.8

Q ss_pred             CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc--Cceeee-----ccccccCCCCCCCcceeeecc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR--GLIGMY-----HDWCESFNTYPRTYDLLHSSF  290 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R--gl~~~~-----~d~~e~~lpfp~sFDlVh~~~  290 (363)
                      ..++|||+|||+|.-.-+..+. + ....++.+|.+ .|++++..=  ......     ...-....+++ ..|+|++++
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~DLvi~s~  110 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP-PDDLVIASY  110 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC-CCcEEEEeh
Confidence            4579999999999765555442 2 34467778888 777654331  111100     00001123333 349999999


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcC-----HHHHHHHHHHHHhCCceeeee
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      +|..+++ .....++..+.+-+.+  +++|-|.     -..+.++++.+....+.+.+.
T Consensus       111 ~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~AP  166 (274)
T PF09243_consen  111 VLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAP  166 (274)
T ss_pred             hhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceECC
Confidence            9999987 6677888888777766  8888775     346777777775555555443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK04148 hypothetical protein; Provisional

Probab=97.13  E-value=0.0019  Score=56.49  Aligned_cols=89  Identities=13%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             CCceEEEecccccH-HHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC--CCcceeeeccccccc
Q 017983          220 SVRNVMDMNASYGG-FAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP--RTYDLLHSSFLLSDV  295 (363)
Q Consensus       220 ~~r~VLDvGCG~G~-faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp--~sFDlVh~~~~l~~~  295 (363)
                      +..+|||||||+|. ++..|++.+.   +|+++|.+ +.++.+.+++...+..|..+  .++.  ..+|+|.+-+-    
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liysirp----   86 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYSIRP----   86 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEEeCC----
Confidence            34689999999995 9999998775   46777888 77888888887666666533  2233  88898886522    


Q ss_pred             cccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          296 TQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       296 ~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                        +.++...+.++.+-+  |.-++|.
T Consensus        87 --p~el~~~~~~la~~~--~~~~~i~  108 (134)
T PRK04148         87 --PRDLQPFILELAKKI--NVPLIIK  108 (134)
T ss_pred             --CHHHHHHHHHHHHHc--CCCEEEE
Confidence              123445555555533  3344444

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.06  E-value=0.00048  Score=62.55  Aligned_cols=66  Identities=20%  Similarity=0.224  Sum_probs=49.6

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCC-C-CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQK-L-TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~-L-Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.+++.|.++++..  ...+++. + +|++++||+|+|+.+++|.. ++..+|.|+.|++++   .+++.|
T Consensus        43 D~s~~~i~~a~~~~~~~--~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-d~~~~l~e~~r~~~~---~ii~~p  110 (194)
T TIGR02081        43 EIDQDGVLACVARGVNV--IQGDLDEGLEAFPDKSFDYVILSQTLQATR-NPEEILDEMLRVGRH---AIVSFP  110 (194)
T ss_pred             eCCHHHHHHHHHcCCeE--EEEEhhhcccccCCCCcCEEEEhhHhHcCc-CHHHHHHHHHHhCCe---EEEEcC
Confidence            88999999998888643  3445443 5 58999999999998886655 467899999888664   455544

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.05  E-value=0.0016  Score=61.87  Aligned_cols=91  Identities=18%  Similarity=0.035  Sum_probs=58.7

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCCh
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDD   85 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~   85 (363)
                      -|+++.+++.|+++.-...+  .+...++..+.+||+|+|+.....    ...++.++.|+|||||+|++++...     
T Consensus       148 iDis~~~l~~A~~n~~~~~~--~~~~~~~~~~~~fD~Vvani~~~~----~~~l~~~~~~~LkpgG~lilsgi~~-----  216 (250)
T PRK00517        148 VDIDPQAVEAARENAELNGV--ELNVYLPQGDLKADVIVANILANP----LLELAPDLARLLKPGGRLILSGILE-----  216 (250)
T ss_pred             EECCHHHHHHHHHHHHHcCC--CceEEEccCCCCcCEEEEcCcHHH----HHHHHHHHHHhcCCCcEEEEEECcH-----
Confidence            48899999999876211111  011123444448999999754322    2358899999999999999997631     


Q ss_pred             hhHHHHHHHHHHHhhcceEEEEEec
Q 017983           86 RHRSVWNAMVNLTESMCWKAVARSV  110 (363)
Q Consensus        86 e~~~~~~~~~~l~~~~cw~~~~~~~  110 (363)
                         .....+....+...++.+....
T Consensus       217 ---~~~~~v~~~l~~~Gf~~~~~~~  238 (250)
T PRK00517        217 ---EQADEVLEAYEEAGFTLDEVLE  238 (250)
T ss_pred             ---hhHHHHHHHHHHCCCEEEEEEE
Confidence               1234556666777787766543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.03  E-value=0.0014  Score=53.86  Aligned_cols=69  Identities=16%  Similarity=0.163  Sum_probs=49.2

Q ss_pred             cCCCCHHHHHHHHHc----CCC-ceeeecccCC-CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            5 PKDEHEAQIQFALER----GIP-AILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         5 p~D~~~~qvq~A~er----g~p-~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      --|.++.+++.|.+.    +.+ +.+...++.. +++...+||.|++..+..+    ...++.++.|+|||||+|+++.
T Consensus        48 ~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        48 AIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL----LQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             EEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh----HHHHHHHHHHHcCCCCEEEEEe
Confidence            347888999887653    444 4444444443 5555579999998754433    2369999999999999999874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.02  E-value=0.00059  Score=66.12  Aligned_cols=67  Identities=22%  Similarity=0.312  Sum_probs=48.8

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      .+|+.|+++|+++    |++  +.+...+...++.   +||.|++-.+.+|... +-..++..+.|+|||||.+++.
T Consensus        92 tlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen   92 TLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             ES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             ECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            4689999998755    665  5566666666655   9999999999999853 3357999999999999999875

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.02  E-value=0.0046  Score=61.82  Aligned_cols=108  Identities=13%  Similarity=0.092  Sum_probs=68.9

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeec--cc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSS--FL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~--~~  291 (363)
                      .+|||==||||+|..+..-.|   .+++++|.. .|+.-+...    |+  ..++.-+....+|++ ++||.|.|.  +.
T Consensus       199 ~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYG  275 (347)
T COG1041         199 ELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYG  275 (347)
T ss_pred             CEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCC
Confidence            489999999999976654333   457888988 777544322    11  111211112369999 889999985  12


Q ss_pred             cccccccC----CHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHH
Q 017983          292 LSDVTQRC----DIADVAVEMDRILRPGGYVLVQDTLEMINKLKP  332 (363)
Q Consensus       292 l~~~~~~~----~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~  332 (363)
                      .+.-....    -..++|.++.+|||+||++++--........++
T Consensus       276 rst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~  320 (347)
T COG1041         276 RSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEE  320 (347)
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhh
Confidence            22101111    257899999999999999988766444444444

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.98  E-value=0.0038  Score=65.01  Aligned_cols=104  Identities=17%  Similarity=0.226  Sum_probs=59.2

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHH---HHhc-Cc--eeeeccccccCC-CCCCCcceee---
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSI---IFDR-GL--IGMYHDWCESFN-TYPRTYDLLH---  287 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~---a~~R-gl--~~~~~d~~e~~l-pfp~sFDlVh---  287 (363)
                      ....+|||++||.|+=+..|+..--....|++.|.+ +.+..   ..+| |+  +.+.+....... .++.+||.|+   
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa  191 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA  191 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence            345699999999998666665421000135677776 43333   2333 54  222222122111 3458899999   


Q ss_pred             -ecc--ccccccc------cCCH-------HHHHHHHhHhccCCeEEEEEc
Q 017983          288 -SSF--LLSDVTQ------RCDI-------ADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       288 -~~~--~l~~~~~------~~~~-------~~~L~Em~RVLRPGG~lii~D  322 (363)
                       |+.  +|..-++      ..++       .++|....+.|||||+++.+.
T Consensus       192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence             652  2332110      0000       568888999999999999984

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=96.98  E-value=0.002  Score=57.75  Aligned_cols=71  Identities=17%  Similarity=0.113  Sum_probs=50.1

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCC--------------------Cchhh
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG--------------------GKPLL   61 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~--------------------~~~l~   61 (363)
                      -|.++.+++.|.++    ++.+.+...+....+  .++||+|+|+...++..+..                    ..++.
T Consensus        47 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  124 (179)
T TIGR00537        47 TDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLD  124 (179)
T ss_pred             EECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHH
Confidence            37888998888775    444445555544433  46999999986655443210                    23699


Q ss_pred             hhcccccCCeEEEEEeC
Q 017983           62 ELNRILRPGGFFIWSAT   78 (363)
Q Consensus        62 E~~RVLrPGG~~~~s~~   78 (363)
                      ++.|+|||||.+++..+
T Consensus       125 ~~~~~Lk~gG~~~~~~~  141 (179)
T TIGR00537       125 ELPEILKEGGRVQLIQS  141 (179)
T ss_pred             hHHHhhCCCCEEEEEEe
Confidence            99999999999999865

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=96.95  E-value=0.002  Score=61.59  Aligned_cols=66  Identities=11%  Similarity=0.127  Sum_probs=45.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|++++.   .++++|.. .+++.+.++-    -+.+++..   .+.++ ..||.|+++.-+
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D---~~~~~~~~~d~Vv~NlPy  101 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGD---ALKVDLPEFNKVVSNLPY  101 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEec---cccCCchhceEEEEcCCc
Confidence            46999999999999999998753   46777877 7887776652    13333322   23334 458999887443

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=96.94  E-value=0.0069  Score=54.56  Aligned_cols=88  Identities=11%  Similarity=0.056  Sum_probs=56.9

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      -|.++.+++.|+++    +++ +.+...++ ..+++ ++||+|++.....+    ...++.++.|+|+|||++++.....
T Consensus        61 vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~-~~~~~-~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~lv~~~~~~  134 (187)
T PRK08287         61 IERNPDALRLIKENRQRFGCGNIDIIPGEA-PIELP-GKADAIFIGGSGGN----LTAIIDWSLAHLHPGGRLVLTFILL  134 (187)
T ss_pred             EECCHHHHHHHHHHHHHhCCCCeEEEecCc-hhhcC-cCCCEEEECCCccC----HHHHHHHHHHhcCCCeEEEEEEecH
Confidence            38888888888764    443 33333333 23554 68999998754332    2358899999999999999975411


Q ss_pred             CCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983           81 YRHDDRHRSVWNAMVNLTESMCWKAVA  107 (363)
Q Consensus        81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~  107 (363)
                              .....+..+.++.+++.+.
T Consensus       135 --------~~~~~~~~~l~~~g~~~~~  153 (187)
T PRK08287        135 --------ENLHSALAHLEKCGVSELD  153 (187)
T ss_pred             --------hhHHHHHHHHHHCCCCcce
Confidence                    1234555666677765544

>PRK13699 putative methylase; Provisional

Probab=96.92  E-value=0.02  Score=54.03  Aligned_cols=43  Identities=21%  Similarity=0.261  Sum_probs=29.5

Q ss_pred             CCCCCCccEEEeCC----ccccccc-----C-----CCchhhhhcccccCCeEEEEE
Q 017983           34 TFPDDAYDLIHCAR----CRVHWDA-----Q-----GGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus        34 Pfpd~sFD~v~cs~----~~~~~~~-----~-----~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      .+||+|+|+|+.+-    .......     +     ....+.|+.|||||||.+++-
T Consensus        15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if   71 (227)
T PRK13699         15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF   71 (227)
T ss_pred             hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            58999999999862    0000000     0     025789999999999999864

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=96.92  E-value=0.0053  Score=58.83  Aligned_cols=117  Identities=20%  Similarity=0.256  Sum_probs=67.3

Q ss_pred             hccccCCCCCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhc----Cc---eee-eccccccCCC-
Q 017983          212 GGLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GL---IGM-YHDWCESFNT-  278 (363)
Q Consensus       212 ~~l~i~~~~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~-~~d~~e~~lp-  278 (363)
                      ..++|.+|+  +||+.|.|+|+++.+|+..   ...   |...+.. +..+.|.+.    |+   +.+ ..|.|+...+ 
T Consensus        34 ~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~---v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~  108 (247)
T PF08704_consen   34 MRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGH---VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE  108 (247)
T ss_dssp             HHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSE---EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred             HHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeE---EEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence            345676664  9999999999999988852   123   3444555 555544433    44   333 3465643221 


Q ss_pred             -CCCCcceeeeccccccccccCCHHHHHHHHhHhc-cCCeEEEEE-cCHHHHHHHHHHHHhCCcee
Q 017983          279 -YPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRIL-RPGGYVLVQ-DTLEMINKLKPVLHSLQWST  341 (363)
Q Consensus       279 -fp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVL-RPGG~lii~-D~~~~~~~i~~l~~~l~W~~  341 (363)
                       ..+.||.|+-.     ++++   -.+|.-+.++| ||||.+++- -..+.+.+.-+-++...|..
T Consensus       109 ~~~~~~DavfLD-----lp~P---w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~  166 (247)
T PF08704_consen  109 ELESDFDAVFLD-----LPDP---WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD  166 (247)
T ss_dssp             T-TTSEEEEEEE-----SSSG---GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred             cccCcccEEEEe-----CCCH---HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence             12789988754     3332   34889999999 999998775 44554444444445556754

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.91  E-value=0.0019  Score=59.44  Aligned_cols=66  Identities=14%  Similarity=0.084  Sum_probs=48.5

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|.++    |+.  +.+...++...+.++++||+|++..+..+       +..|+.|+|+|||+|++...
T Consensus       103 iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~-------~~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        103 VEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAAST-------IPSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcch-------hhHHHHHhcCcCcEEEEEEc
Confidence            37888888888764    554  45566666665556789999999866543       33588999999999998654

>PRK00536 speE spermidine synthase; Provisional

Probab=96.90  E-value=0.0053  Score=59.31  Aligned_cols=91  Identities=13%  Similarity=0.072  Sum_probs=61.7

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc------Cc----eeeeccccccCCCCCCCcceee
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------GL----IGMYHDWCESFNTYPRTYDLLH  287 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R------gl----~~~~~d~~e~~lpfp~sFDlVh  287 (363)
                      ++.++||=+|-|-|+.++++++++-   .|+-++.- ++++.+++-      ++    +..+. +..  -...++||+|+
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVII  144 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLII  144 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEE
Confidence            4578999999999999999999873   45555554 456555541      11    11111 111  01137899999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +...+.        ......+.|.|+|||.++..-.
T Consensus       145 vDs~~~--------~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        145 CLQEPD--------IHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             EcCCCC--------hHHHHHHHHhcCCCcEEEECCC
Confidence            985433        3477899999999999998643

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=96.86  E-value=0.00044  Score=66.53  Aligned_cols=70  Identities=20%  Similarity=0.287  Sum_probs=51.4

Q ss_pred             cCCCCHHHHHHHHHcC--CCcee---------eecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEE
Q 017983            5 PKDEHEAQIQFALERG--IPAIL---------SVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFF   73 (363)
Q Consensus         5 p~D~~~~qvq~A~erg--~p~~~---------~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~   73 (363)
                      --|.++.+|..|.|.-  -|..-         ...+++.+.   ..||+|+|+.+++|..+ +..++.-+.+.|||||.+
T Consensus       116 GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~d-p~~~l~~l~~~lkP~G~l  191 (282)
T KOG1270|consen  116 GIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKD-PQEFLNCLSALLKPNGRL  191 (282)
T ss_pred             eecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhC-HHHHHHHHHHHhCCCCce
Confidence            4589999999999882  11111         111233331   22999999999999764 778999999999999999


Q ss_pred             EEEeC
Q 017983           74 IWSAT   78 (363)
Q Consensus        74 ~~s~~   78 (363)
                      ++++=
T Consensus       192 fitti  196 (282)
T KOG1270|consen  192 FITTI  196 (282)
T ss_pred             Eeeeh
Confidence            99843

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.85  E-value=0.007  Score=57.96  Aligned_cols=126  Identities=11%  Similarity=0.138  Sum_probs=72.4

Q ss_pred             CCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHH----HhcCc---eeeeccccccCCC-------CCC
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSII----FDRGL---IGMYHDWCESFNT-------YPR  281 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a----~~Rgl---~~~~~d~~e~~lp-------fp~  281 (363)
                      ..++||.+|+++|.-+.+|+..   +..   |+.++.. +..++|    .+-|+   +.+....+...|+       +.+
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~---v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~  155 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGK---ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG  155 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCE---EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence            3579999999999877777642   223   3333443 344433    23343   3333222222232       236


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC---------H-----HHH----HHHHH----HHHhCCc
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT---------L-----EMI----NKLKP----VLHSLQW  339 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~---------~-----~~~----~~i~~----l~~~l~W  339 (363)
                      +||+|+...      ++......+....+.|||||.+++-+.         .     ...    ..|++    +...=++
T Consensus       156 ~fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~  229 (247)
T PLN02589        156 TFDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRI  229 (247)
T ss_pred             cccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCE
Confidence            899999862      233456678888899999999877431         0     111    12223    3445556


Q ss_pred             eeeee--cceEEEEEec
Q 017983          340 STNIY--HDQFLVGKKG  354 (363)
Q Consensus       340 ~~~~~--~~~~li~~K~  354 (363)
                      ...+-  .+.+++++|+
T Consensus       230 ~~~llPigDGl~l~~k~  246 (247)
T PLN02589        230 EICMLPVGDGITLCRRI  246 (247)
T ss_pred             EEEEEEeCCccEEEEEe
Confidence            55544  6788888875

>TIGR00755 ksgA dimethyladenosine transferase

Probab=96.84  E-value=0.004  Score=59.15  Aligned_cols=41  Identities=15%  Similarity=0.234  Sum_probs=31.7

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR  263 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R  263 (363)
                      +..+|||+|||+|.++..|+++...   ++++|.+ .+++.+.++
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~   70 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKL   70 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHH
Confidence            3469999999999999999987543   5666766 677766654

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.83  E-value=0.0034  Score=58.29  Aligned_cols=108  Identities=15%  Similarity=0.186  Sum_probs=57.7

Q ss_pred             hhccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhc--CCCeEEEEeecCCc----chHHHHHhc-Cc
Q 017983          193 EAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP----DTLSIIFDR-GL  265 (363)
Q Consensus       193 e~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~--~~v~v~~v~~~d~s----~~L~~a~~R-gl  265 (363)
                      -+|...-..-+.++.+ .     +.  +..+||||-||.|.|+..++.  ++..+   .+.|..    +.|....+. ++
T Consensus        82 vyfs~rl~~Er~Ri~~-~-----v~--~~e~VlD~faGIG~f~l~~ak~~~~~~V---~A~d~Np~a~~~L~~Ni~lNkv  150 (200)
T PF02475_consen   82 VYFSPRLSTERRRIAN-L-----VK--PGEVVLDMFAGIGPFSLPIAKHGKAKRV---YAVDLNPDAVEYLKENIRLNKV  150 (200)
T ss_dssp             S---GGGHHHHHHHHT-C---------TT-EEEETT-TTTTTHHHHHHHT-SSEE---EEEES-HHHHHHHHHHHHHTT-
T ss_pred             EEEccccHHHHHHHHh-c-----CC--cceEEEEccCCccHHHHHHhhhcCccEE---EEecCCHHHHHHHHHHHHHcCC
Confidence            3455554555555543 1     22  246999999999999999987  44443   344433    333332222 22


Q ss_pred             ---eeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEE
Q 017983          266 ---IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL  319 (363)
Q Consensus       266 ---~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~li  319 (363)
                         +..++..|...++ ...||-|++..-     .  ....+|.+..+.+|+||.+.
T Consensus       151 ~~~i~~~~~D~~~~~~-~~~~drvim~lp-----~--~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  151 ENRIEVINGDAREFLP-EGKFDRVIMNLP-----E--SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             TTTEEEEES-GGG----TT-EEEEEE--T-----S--SGGGGHHHHHHHEEEEEEEE
T ss_pred             CCeEEEEcCCHHHhcC-ccccCEEEECCh-----H--HHHHHHHHHHHHhcCCcEEE
Confidence               4445555655444 699998877521     1  12348899999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=96.83  E-value=0.0015  Score=66.31  Aligned_cols=71  Identities=23%  Similarity=0.365  Sum_probs=51.4

Q ss_pred             CCCHHHHHHHHH----cCCCc-eeeecccCCC--CCCCCCccEEEeCCcccccccCC------CchhhhhcccccCCeEE
Q 017983            7 DEHEAQIQFALE----RGIPA-ILSVIGTQKL--TFPDDAYDLIHCARCRVHWDAQG------GKPLLELNRILRPGGFF   73 (363)
Q Consensus         7 D~~~~qvq~A~e----rg~p~-~~~~~~~~~L--Pfpd~sFD~v~cs~~~~~~~~~~------~~~l~E~~RVLrPGG~~   73 (363)
                      |++..++..|.+    +|++. .+...++..+  +|++++||.|++... .||+...      ..+|.|+.|+|||||.+
T Consensus       153 EI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l  231 (390)
T PRK14121        153 EIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTL  231 (390)
T ss_pred             ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-CCccccchhhccHHHHHHHHHHHcCCCcEE
Confidence            667667665544    46654 4455566654  689999999998643 5675322      36899999999999999


Q ss_pred             EEEeC
Q 017983           74 IWSAT   78 (363)
Q Consensus        74 ~~s~~   78 (363)
                      .+.+.
T Consensus       232 ~l~TD  236 (390)
T PRK14121        232 ELRTD  236 (390)
T ss_pred             EEEEE
Confidence            99755

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.81  E-value=0.0018  Score=64.12  Aligned_cols=75  Identities=24%  Similarity=0.337  Sum_probs=57.5

Q ss_pred             CCCCHHHHHHHHHc-----C------CCceeeecc------cCCCCCCCCCccEEEeCCcccccccC---CCchhhhhcc
Q 017983            6 KDEHEAQIQFALER-----G------IPAILSVIG------TQKLTFPDDAYDLIHCARCRVHWDAQ---GGKPLLELNR   65 (363)
Q Consensus         6 ~D~~~~qvq~A~er-----g------~p~~~~~~~------~~~LPfpd~sFD~v~cs~~~~~~~~~---~~~~l~E~~R   65 (363)
                      -|+.+.-||+|++|     +      .++.+...+      ...++|+|-.||+|-|-.|+|.=-..   ...+|+-+.+
T Consensus       146 iDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~  225 (389)
T KOG1975|consen  146 IDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAK  225 (389)
T ss_pred             eehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHh
Confidence            37788888888877     1      356777776      34589999999999998887442221   2468999999


Q ss_pred             cccCCeEEEEEeCCC
Q 017983           66 ILRPGGFFIWSATPV   80 (363)
Q Consensus        66 VLrPGG~~~~s~~~~   80 (363)
                      .|||||+|+-+.|..
T Consensus       226 ~LkpGG~FIgTiPds  240 (389)
T KOG1975|consen  226 CLKPGGVFIGTIPDS  240 (389)
T ss_pred             hcCCCcEEEEecCcH
Confidence            999999999999943

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=96.69  E-value=0.0037  Score=63.68  Aligned_cols=115  Identities=18%  Similarity=0.226  Sum_probs=73.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCCC-C---Ccceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTYP-R---TYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpfp-~---sFDlVh  287 (363)
                      .++|||+=|-||+|+.+.+..|+.  .|+.+|.| ..|+.|.+.    |+    +..+...|-..+.+. +   +||+|+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            469999999999999998887762  35666888 677766654    33    122332233334443 3   999999


Q ss_pred             ec---ccccc---ccccCCHHHHHHHHhHhccCCeEEEEEcCH------HHHHHHHHHHHhC
Q 017983          288 SS---FLLSD---VTQRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSL  337 (363)
Q Consensus       288 ~~---~~l~~---~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l  337 (363)
                      ..   +.-+-   +.-..+..+++.+..++|+|||.++++...      ..+..+.+-+..+
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~  357 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAA  357 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhc
Confidence            74   11110   111123467899999999999999998642      3444444444443

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=96.67  E-value=0.0022  Score=62.41  Aligned_cols=68  Identities=16%  Similarity=0.154  Sum_probs=49.8

Q ss_pred             HHHHHHHHH----cCCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeCC
Q 017983           10 EAQIQFALE----RGIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus        10 ~~qvq~A~e----rg~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      +.+++.|++    .|+.  +.+...+....++|.  +|+|+++.++|+|.++. ..+|+++.|+|||||++++....
T Consensus       182 ~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~  256 (306)
T TIGR02716       182 PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  256 (306)
T ss_pred             HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            456666654    3554  345555666667774  69999999999887542 46899999999999999998653

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=96.65  E-value=0.0081  Score=55.92  Aligned_cols=96  Identities=19%  Similarity=0.264  Sum_probs=61.2

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccc------cccC-------------------
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVH------WDAQ-------------------   55 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~------~~~~-------------------   55 (363)
                      -|.++.+++.|.+.    |++ +.+...+... ++++++||+|+|.--.+.      +..+                   
T Consensus       117 iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  195 (251)
T TIGR03534       117 VDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDF  195 (251)
T ss_pred             EECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHH
Confidence            37788888888754    554 4555555544 678899999998431111      1100                   


Q ss_pred             CCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecC
Q 017983           56 GGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVD  111 (363)
Q Consensus        56 ~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~  111 (363)
                      ...++.++.|+|+|||.+++....   .      .-..+.++....+++.+..+.+
T Consensus       196 ~~~~i~~~~~~L~~gG~~~~~~~~---~------~~~~~~~~l~~~gf~~v~~~~d  242 (251)
T TIGR03534       196 YRRIIAQAPRLLKPGGWLLLEIGY---D------QGEAVRALFEAAGFADVETRKD  242 (251)
T ss_pred             HHHHHHHHHHhcccCCEEEEEECc---c------HHHHHHHHHHhCCCCceEEEeC
Confidence            014678999999999999998651   1      1234566666677766554444

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.58  E-value=0.0027  Score=48.57  Aligned_cols=71  Identities=20%  Similarity=0.228  Sum_probs=49.9

Q ss_pred             CCCCHHHHHHHH---HcC--CCceeeecccCCCC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFAL---ERG--IPAILSVIGTQKLT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~---erg--~p~~~~~~~~~~LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.++.+++.+.   +.+  ....+...+....+ .+.+.||+|+|.....++......++..+.++|||||+++++
T Consensus        27 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          27 VDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            367888888776   222  22344444544443 367899999998877653444567999999999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.57  E-value=0.016  Score=54.86  Aligned_cols=96  Identities=20%  Similarity=0.344  Sum_probs=60.4

Q ss_pred             cCCCCCceEEEecccccHHHHHhhc----CC-CeEEEEeecCCcchHHHHHhcC-ceeeeccccccCCC--CC---CCcc
Q 017983          216 INWSSVRNVMDMNASYGGFAAALID----QP-LWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNT--YP---RTYD  284 (363)
Q Consensus       216 i~~~~~r~VLDvGCG~G~faa~L~~----~~-v~v~~v~~~d~s~~L~~a~~Rg-l~~~~~d~~e~~lp--fp---~sFD  284 (363)
                      |.+|  .+||-+|+.+|+....+.+    .| |.+....|....+.+.+|.+|- ++.++.|   ++.|  |.   ...|
T Consensus        71 ik~g--skVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~D---Ar~P~~Y~~lv~~VD  145 (229)
T PF01269_consen   71 IKPG--SKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILED---ARHPEKYRMLVEMVD  145 (229)
T ss_dssp             --TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES----TTSGGGGTTTS--EE
T ss_pred             CCCC--CEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeecc---CCChHHhhccccccc
Confidence            4444  5999999999998777765    22 2222222222225678899986 4667776   3455  33   6778


Q ss_pred             eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +|++.-.     .+...+-++.-....||+||+++|.
T Consensus       146 vI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  146 VIFQDVA-----QPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             EEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence            8887622     2334555788888999999999987

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.56  E-value=0.042  Score=51.68  Aligned_cols=135  Identities=17%  Similarity=0.190  Sum_probs=77.4

Q ss_pred             cchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHH--HhhcCCCeEEEEeecCCc----chHHHHHh-cCc--eee
Q 017983          198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAA--ALIDQPLWVMNVVPIDAP----DTLSIIFD-RGL--IGM  268 (363)
Q Consensus       198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa--~L~~~~v~v~~v~~~d~s----~~L~~a~~-Rgl--~~~  268 (363)
                      ..+.|.+.+-+.-.-...+... ..+++|+|+|.|-=+.  ++......   |+-+|..    +.|+.+.. =|+  +.+
T Consensus        46 ~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~~---vtLles~~Kk~~FL~~~~~eL~L~nv~i  121 (215)
T COG0357          46 PEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDLK---VTLLESLGKKIAFLREVKKELGLENVEI  121 (215)
T ss_pred             HHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccCCc---EEEEccCchHHHHHHHHHHHhCCCCeEE
Confidence            3477877665421100111111 3699999999994333  33333333   3344433    45654443 355  566


Q ss_pred             eccccccCCCCCCC-cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEE---EcCHHHHHHHHHHHHhCCceeeee
Q 017983          269 YHDWCESFNTYPRT-YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV---QDTLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       269 ~~d~~e~~lpfp~s-FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii---~D~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      ++..+|.+-+- .. ||+|.|. ++.      .+..++.=....||+||+++.   .-..+.+.++++-.....+.+...
T Consensus       122 ~~~RaE~~~~~-~~~~D~vtsR-Ava------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~  193 (215)
T COG0357         122 VHGRAEEFGQE-KKQYDVVTSR-AVA------SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV  193 (215)
T ss_pred             ehhhHhhcccc-cccCcEEEee-hcc------chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence            77766653321 22 9999876 333      244466667789999998753   344556677777777777776554

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=96.56  E-value=0.013  Score=58.51  Aligned_cols=71  Identities=14%  Similarity=0.064  Sum_probs=50.3

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccccc----CCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA----QGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~----~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|+++.+++.|+++    ++...+...+.  +...++.||+|+|+...|....    ....++.++.|.|||||.|++..
T Consensus       226 vDis~~Al~~A~~nl~~n~l~~~~~~~D~--~~~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        226 SDVSAAALESSRATLAANGLEGEVFASNV--FSDIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCEEEEccc--ccccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            38899999888753    55555544443  3334689999999865533211    12478999999999999999976


Q ss_pred             C
Q 017983           78 T   78 (363)
Q Consensus        78 ~   78 (363)
                      .
T Consensus       304 n  304 (342)
T PRK09489        304 N  304 (342)
T ss_pred             e
Confidence            5

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.54  E-value=0.0046  Score=57.38  Aligned_cols=44  Identities=16%  Similarity=0.212  Sum_probs=34.1

Q ss_pred             CCCCCCccEEEeCCcccccccCC-----------CchhhhhcccccCCeEEEEEeC
Q 017983           34 TFPDDAYDLIHCARCRVHWDAQG-----------GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        34 Pfpd~sFD~v~cs~~~~~~~~~~-----------~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      ++++++||+|+|+.+. +|..++           ..+|.++.|+|||||.|++...
T Consensus       112 ~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~  166 (209)
T PRK11188        112 RVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF  166 (209)
T ss_pred             HhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            3788999999997654 443221           2489999999999999999754

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=96.53  E-value=0.0035  Score=59.14  Aligned_cols=110  Identities=17%  Similarity=0.184  Sum_probs=82.0

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCCh
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDD   85 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~   85 (363)
                      -|.|.+|+..|.+|...+.+...+.... -|++.+|+++++-++ ||..|....|.-..--|.|||+|++-.|..   +.
T Consensus        60 iDsS~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~dllfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN---~d  134 (257)
T COG4106          60 IDSSPAMLAKAAQRLPDATFEEADLRTW-KPEQPTDLLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN---LD  134 (257)
T ss_pred             ccCCHHHHHHHHHhCCCCceecccHhhc-CCCCccchhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc---cC
Confidence            4899999999999998888887776554 367899999988554 897777789999999999999999999943   22


Q ss_pred             hhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCC-Chhc
Q 017983           86 RHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVS-YSCY  129 (363)
Q Consensus        86 e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~-~~c~  129 (363)
                      |  ..-..|.+.+++.-|......       ..+.+++.- -+-|
T Consensus       135 e--psH~~mr~~A~~~p~~~~l~~-------~~~~r~~v~s~a~Y  170 (257)
T COG4106         135 E--PSHRLMRETADEAPFAQELGG-------RGLTRAPLPSPAAY  170 (257)
T ss_pred             c--hhHHHHHHHHhcCchhhhhCc-------cccccCCCCCHHHH
Confidence            2  234578899988877543321       223577764 3444

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.46  E-value=0.0041  Score=58.07  Aligned_cols=71  Identities=14%  Similarity=0.066  Sum_probs=51.5

Q ss_pred             CCCCHHHHHHHH-HcCC----------------CceeeecccCCCCCC-CCCccEEEeCCcccccccC-CCchhhhhccc
Q 017983            6 KDEHEAQIQFAL-ERGI----------------PAILSVIGTQKLTFP-DDAYDLIHCARCRVHWDAQ-GGKPLLELNRI   66 (363)
Q Consensus         6 ~D~~~~qvq~A~-erg~----------------p~~~~~~~~~~LPfp-d~sFD~v~cs~~~~~~~~~-~~~~l~E~~RV   66 (363)
                      -|+|+..|+.|. +.|+                .+.+.+.|...++.. ...||.|.-+.+++|.+.+ ...++..+.+.
T Consensus        62 vD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~l  141 (213)
T TIGR03840        62 VELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLAL  141 (213)
T ss_pred             EeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHH
Confidence            378888888753 4444                345567777666643 4679999988888887654 25689999999


Q ss_pred             ccCCeEEEEE
Q 017983           67 LRPGGFFIWS   76 (363)
Q Consensus        67 LrPGG~~~~s   76 (363)
                      |||||++++.
T Consensus       142 LkpgG~~ll~  151 (213)
T TIGR03840       142 LPPGARQLLI  151 (213)
T ss_pred             cCCCCeEEEE
Confidence            9999975554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.45  E-value=0.0021  Score=52.74  Aligned_cols=73  Identities=22%  Similarity=0.362  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCC--CCCCCccEEEeCCcccccccCC-------CchhhhhcccccCC
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLT--FPDDAYDLIHCARCRVHWDAQG-------GKPLLELNRILRPG   70 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~~~~~-------~~~l~E~~RVLrPG   70 (363)
                      -|+++..++.|+++    ++  ++.+.+.+...++  ++++.||+|+++-=......+.       ..++.++.|+||||
T Consensus        29 vdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g  108 (117)
T PF13659_consen   29 VDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG  108 (117)
T ss_dssp             EESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred             EEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence            36778888888765    33  3677777766664  8999999999965333221111       25789999999999


Q ss_pred             eEEEEEeC
Q 017983           71 GFFIWSAT   78 (363)
Q Consensus        71 G~~~~s~~   78 (363)
                      |.+++..|
T Consensus       109 G~~~~~~~  116 (117)
T PF13659_consen  109 GVLVFITP  116 (117)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEeC
Confidence            99999865

...

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.43  E-value=0.02  Score=53.87  Aligned_cols=112  Identities=17%  Similarity=0.264  Sum_probs=75.5

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCC-C-CCcceeeeccccccccccC
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTY-P-RTYDLLHSSFLLSDVTQRC  299 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpf-p-~sFDlVh~~~~l~~~~~~~  299 (363)
                      -++|||||=....+  ....  ...+|+++|....     ..++  ...|+.+.-+|- + +.||+|.|+.||..++++.
T Consensus        53 lrlLEVGals~~N~--~s~~--~~fdvt~IDLns~-----~~~I--~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~  121 (219)
T PF11968_consen   53 LRLLEVGALSTDNA--CSTS--GWFDVTRIDLNSQ-----HPGI--LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK  121 (219)
T ss_pred             ceEEeecccCCCCc--cccc--CceeeEEeecCCC-----CCCc--eeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence            58999998744322  1111  1345777775521     1111  134544433553 3 8999999999999999887


Q ss_pred             CHHHHHHHHhHhccCCeE-----EEEEcC------HH--HHHHHHHHHHhCCceeeee
Q 017983          300 DIADVAVEMDRILRPGGY-----VLVQDT------LE--MINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       300 ~~~~~L~Em~RVLRPGG~-----lii~D~------~~--~~~~i~~l~~~l~W~~~~~  344 (363)
                      ..-+.++-+.+.|||+|.     ++|--.      ..  ..+.+..+..+|.......
T Consensus       122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~  179 (219)
T PF11968_consen  122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY  179 (219)
T ss_pred             HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence            778899999999999999     655422      11  2367889999999987665

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=96.43  E-value=0.0055  Score=62.19  Aligned_cols=91  Identities=18%  Similarity=0.192  Sum_probs=58.1

Q ss_pred             ceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCCCCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      .+|||++||+|.++..++.. ++  -.|+.+|.+ +.++.+.+.    ++  ..++...+...+.-.+.||+|+..= + 
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-  134 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-  134 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence            48999999999999998753 32  246677776 555444322    22  2234333332222146799999862 1 


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                           .....+|....+.++|||.++++
T Consensus       135 -----Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 -----GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence                 22345777767889999999998

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.42  E-value=0.0076  Score=60.15  Aligned_cols=98  Identities=19%  Similarity=0.290  Sum_probs=64.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHh--cCceeeeccccccCCCCCCCcceeeeccccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFD--RGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~--Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~  297 (363)
                      .....+|+|.|.|..+..+..+--+ +..+-.|.+.-++.+..  .|+-.+..|-... .   -+-|+|++-+++|||++
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~---P~~daI~mkWiLhdwtD  251 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-T---PKGDAIWMKWILHDWTD  251 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHHHHHhhhhhhcCCcceeccccccc-C---CCcCeEEEEeecccCCh
Confidence            3578999999999998888774222 12222233322222221  3332233332111 2   34459999999999987


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      . +..++|+-...-|+|||.+++-|.
T Consensus       252 e-dcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  252 E-DCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             H-HHHHHHHHHHHhCCCCCEEEEEec
Confidence            4 678999999999999999999875

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.42  E-value=0.0074  Score=55.96  Aligned_cols=65  Identities=15%  Similarity=0.066  Sum_probs=47.8

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.+++.|+++    |+. +.+...++...+++++.||+|++.....+       ...++.+.|||||.|++...
T Consensus       108 E~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        108 ERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             eCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEEc
Confidence            6788889888875    554 55566666666677899999998754422       34567789999999998643

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.40  E-value=0.075  Score=53.38  Aligned_cols=92  Identities=20%  Similarity=0.249  Sum_probs=59.2

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCCCCCcceeeeccccccccccC
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRC  299 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~  299 (363)
                      +..++||+||++|+|+-.|.+++..   |+++|...|-+...+.+.+..+....-...|-++.+|+++|..+-.      
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~rG~~---V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------  281 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRRGMF---VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------  281 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCE---EEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC------
Confidence            3469999999999999999999864   5666755554444555544333221112233248899999985533      


Q ss_pred             CHHHHHHHHhHhccCC--eEEEEE
Q 017983          300 DIADVAVEMDRILRPG--GYVLVQ  321 (363)
Q Consensus       300 ~~~~~L~Em~RVLRPG--G~lii~  321 (363)
                       +..++.=|.+-|..|  +.+|+.
T Consensus       282 -P~rva~lm~~Wl~~g~cr~aIfn  304 (357)
T PRK11760        282 -PARVAELMAQWLVNGWCREAIFN  304 (357)
T ss_pred             -HHHHHHHHHHHHhcCcccEEEEE
Confidence             345666666677665  456665

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.39  E-value=0.00099  Score=64.76  Aligned_cols=79  Identities=22%  Similarity=0.213  Sum_probs=61.6

Q ss_pred             CCCcCCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccC--CCchhhhhcccccCCeEEEEEeCC
Q 017983            2 SLAPKDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ--GGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         2 s~ap~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~--~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      ++.+-|.+...+.-|...|.. .+.+.++-.+||++.+||.++..-+.|||...  ...++.|+.|+|||||...+-+..
T Consensus        67 ~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa  145 (293)
T KOG1331|consen   67 LIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA  145 (293)
T ss_pred             eeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence            355667777777777555532 56677899999999999999998888888542  357999999999999998777664


Q ss_pred             CC
Q 017983           80 VY   81 (363)
Q Consensus        80 ~~   81 (363)
                      .+
T Consensus       146 ~~  147 (293)
T KOG1331|consen  146 LE  147 (293)
T ss_pred             hh
Confidence            44

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.38  E-value=0.013  Score=54.60  Aligned_cols=119  Identities=13%  Similarity=0.247  Sum_probs=73.0

Q ss_pred             CCcCCCCHHHH----HHHHHcCCCceee--ecccCCCC--------CCCCCccEEEeCCcccccccC--CCchhhhhccc
Q 017983            3 LAPKDEHEAQI----QFALERGIPAILS--VIGTQKLT--------FPDDAYDLIHCARCRVHWDAQ--GGKPLLELNRI   66 (363)
Q Consensus         3 ~ap~D~~~~qv----q~A~erg~p~~~~--~~~~~~LP--------fpd~sFD~v~cs~~~~~~~~~--~~~~l~E~~RV   66 (363)
                      +-|.|..+...    +-+.+.|.+++..  .+|+.+-+        +..++||+|+|.= .+|...-  -..++.++.++
T Consensus        52 WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N-~lHI~p~~~~~~lf~~a~~~  130 (204)
T PF06080_consen   52 WQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCIN-MLHISPWSAVEGLFAGAARL  130 (204)
T ss_pred             EcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehh-HHHhcCHHHHHHHHHHHHHh
Confidence            44667665553    1233445543332  23333332        2356999999963 3444321  24689999999


Q ss_pred             ccCCeEEEEEeCCCCC--CChh-hHHH---------------HHHHHHHHhhcceEEEEEecCCCceeEEEEec
Q 017983           67 LRPGGFFIWSATPVYR--HDDR-HRSV---------------WNAMVNLTESMCWKAVARSVDSNRIGFVIYQK  122 (363)
Q Consensus        67 LrPGG~~~~s~~~~~~--~~~e-~~~~---------------~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k  122 (363)
                      |+|||.|++-+|-.+.  ..++ +.+.               .+.|+.++..-+.++.....=.....+.||+|
T Consensus       131 L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk  204 (204)
T PF06080_consen  131 LKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDMPANNLLLVFRK  204 (204)
T ss_pred             CCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence            9999999999986552  1112 1111               35799999999999887653222246788887

The function of this family is unknown.

>PRK14967 putative methyltransferase; Provisional

Probab=96.37  E-value=0.0057  Score=56.85  Aligned_cols=72  Identities=13%  Similarity=0.080  Sum_probs=47.9

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccC--------------------CCchhh
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ--------------------GGKPLL   61 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~--------------------~~~~l~   61 (363)
                      -|.++.+++.|+++    |+.+.+...+... ++++++||+|+|..-.++-...                    ...++.
T Consensus        65 vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  143 (223)
T PRK14967         65 VDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCD  143 (223)
T ss_pred             EECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHH
Confidence            37888888877653    5555555555543 4678899999996322111000                    013678


Q ss_pred             hhcccccCCeEEEEEeC
Q 017983           62 ELNRILRPGGFFIWSAT   78 (363)
Q Consensus        62 E~~RVLrPGG~~~~s~~   78 (363)
                      ++.|+|||||.+++..+
T Consensus       144 ~a~~~Lk~gG~l~~~~~  160 (223)
T PRK14967        144 AAPALLAPGGSLLLVQS  160 (223)
T ss_pred             HHHHhcCCCcEEEEEEe
Confidence            89999999999998755

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=96.37  E-value=0.0084  Score=58.76  Aligned_cols=63  Identities=11%  Similarity=0.166  Sum_probs=43.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----C---ceeeeccccccCCCCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G---LIGMYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----g---l~~~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      ..+|||+|||+|.++..|++.+..   |+++|.+ +|++.+.++    +   -+.+++..   .+.++ ..||.|+++
T Consensus        37 ~~~VLEIG~G~G~LT~~Ll~~~~~---V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D---al~~~~~~~d~VvaN  108 (294)
T PTZ00338         37 TDTVLEIGPGTGNLTEKLLQLAKK---VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD---ALKTEFPYFDVCVAN  108 (294)
T ss_pred             cCEEEEecCchHHHHHHHHHhCCc---EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC---HhhhcccccCEEEec
Confidence            458999999999999999886533   5677777 677766653    2   13344432   34455 679998876

>TIGR00095 RNA methyltransferase, RsmD family

Probab=96.36  E-value=0.0096  Score=54.49  Aligned_cols=96  Identities=6%  Similarity=-0.013  Sum_probs=55.1

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-C--CC-Ccceeeec
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-Y--PR-TYDLLHSS  289 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-f--p~-sFDlVh~~  289 (363)
                      .+|||++||+|.++.+++.++..  .|+.+|.+ ..++.+.+-    ++   +.++...+...+. +  .. .||+|+..
T Consensus        51 ~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D  128 (189)
T TIGR00095        51 AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD  128 (189)
T ss_pred             CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence            58999999999999999998763  35666766 444433321    22   2223222222222 2  22 47888875


Q ss_pred             cccccccccCCHHHHHHHH--hHhccCCeEEEEEcC
Q 017983          290 FLLSDVTQRCDIADVAVEM--DRILRPGGYVLVQDT  323 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D~  323 (363)
                      ==+.   . .....++.-+  ..+|++||.+++...
T Consensus       129 PPy~---~-~~~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       129 PPFF---N-GALQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             cCCC---C-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            2221   1 1233344333  457999998887644

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.33  E-value=0.047  Score=52.09  Aligned_cols=122  Identities=15%  Similarity=0.244  Sum_probs=81.9

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeecc-ccccCCC--CCCCcceee
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHD-WCESFNT--YPRTYDLLH  287 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d-~~e~~lp--fp~sFDlVh  287 (363)
                      .+.+.. ..+++||+|+-||||.-.|.++++.  -|.++|.. ++|.--..... +-++.. .....-|  |..-.|+++
T Consensus        73 ~F~l~~-k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v  149 (245)
T COG1189          73 EFELDV-KGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIV  149 (245)
T ss_pred             hcCcCC-CCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEE
Confidence            344443 3589999999999999999998764  36777776 66654433332 111111 0000111  124568999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEc----------------------CHHHHHHHHHHHHhCCceeee
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD----------------------TLEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D----------------------~~~~~~~i~~l~~~l~W~~~~  343 (363)
                      |.-.|..      +..+|-.+..+|+|+|.++..-                      ...++.++.+.+....|.+.-
T Consensus       150 ~DvSFIS------L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g  221 (245)
T COG1189         150 IDVSFIS------LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG  221 (245)
T ss_pred             EEeehhh------HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence            9877774      3569999999999999988752                      134678899999999998644

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=96.32  E-value=0.014  Score=55.38  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=55.6

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecc-cCCCCCCCCCccEEEeCCcccccccC-------CC----chhhhhcccccCCeEE
Q 017983            6 KDEHEAQIQFALERGIPAILSVIG-TQKLTFPDDAYDLIHCARCRVHWDAQ-------GG----KPLLELNRILRPGGFF   73 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~-~~~LPfpd~sFD~v~cs~~~~~~~~~-------~~----~~l~E~~RVLrPGG~~   73 (363)
                      -|+|..|+..|.||-+...+...+ .+.|||+.++||-|++- .++.|.-+       +.    .|+.-++.+|++|+..
T Consensus        78 vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISI-SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~ra  156 (270)
T KOG1541|consen   78 VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISI-SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARA  156 (270)
T ss_pred             ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEe-eeeeeecccCccccChHHHHHHHhhhhhhhhccCcee
Confidence            489999999999987664444444 38999999999999863 44577322       11    3677799999999999


Q ss_pred             EEEeCC
Q 017983           74 IWSATP   79 (363)
Q Consensus        74 ~~s~~~   79 (363)
                      ++--.|
T Consensus       157 V~QfYp  162 (270)
T KOG1541|consen  157 VLQFYP  162 (270)
T ss_pred             EEEecc
Confidence            998554

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.30  E-value=0.0062  Score=62.43  Aligned_cols=77  Identities=19%  Similarity=0.400  Sum_probs=53.7

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCC--CCCCCccEEE----eCCcc-------cccccCC----------Cc
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLT--FPDDAYDLIH----CARCR-------VHWDAQG----------GK   58 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LP--fpd~sFD~v~----cs~~~-------~~~~~~~----------~~   58 (363)
                      -|.++.+++.++++    |+.+.+...++..++  ++.++||.|+    |+...       +.|....          ..
T Consensus       274 ~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~  353 (427)
T PRK10901        274 LDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSE  353 (427)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHH
Confidence            48888888888655    666666777777664  4678999999    44221       1122111          25


Q ss_pred             hhhhhcccccCCeEEEEEeCCCCC
Q 017983           59 PLLELNRILRPGGFFIWSATPVYR   82 (363)
Q Consensus        59 ~l~E~~RVLrPGG~~~~s~~~~~~   82 (363)
                      +|.++.++|||||++++|+-.++.
T Consensus       354 iL~~a~~~LkpGG~lvystcs~~~  377 (427)
T PRK10901        354 ILDALWPLLKPGGTLLYATCSILP  377 (427)
T ss_pred             HHHHHHHhcCCCCEEEEEeCCCCh
Confidence            789999999999999999865543

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.30  E-value=0.0093  Score=61.25  Aligned_cols=76  Identities=17%  Similarity=0.287  Sum_probs=53.1

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCC----CCCCCccEEEe----CC-cccccccC----------------
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT----FPDDAYDLIHC----AR-CRVHWDAQ----------------   55 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP----fpd~sFD~v~c----s~-~~~~~~~~----------------   55 (363)
                      -|.++..++.++++    |+. +.+...++..++    +.+++||.|++    |- ..++-..+                
T Consensus       283 ~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~  362 (434)
T PRK14901        283 VDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPL  362 (434)
T ss_pred             EcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHH
Confidence            48888888877654    665 466667777776    66789999995    32 11111111                


Q ss_pred             CCchhhhhcccccCCeEEEEEeCCCC
Q 017983           56 GGKPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        56 ~~~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      ....|.++.++|||||++++|+-.++
T Consensus       363 Q~~iL~~a~~~lkpgG~lvystcsi~  388 (434)
T PRK14901        363 QAELLESLAPLLKPGGTLVYATCTLH  388 (434)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            13578999999999999999987655

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.29  E-value=0.007  Score=47.65  Aligned_cols=72  Identities=28%  Similarity=0.355  Sum_probs=53.2

Q ss_pred             CCCCHHHHHHHHHcCCC-----ceeeecccCC--CCCCC-CCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALERGIP-----AILSVIGTQK--LTFPD-DAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p-----~~~~~~~~~~--LPfpd-~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.+..++..+..+...     +.....+...  +||.+ ..||++ ++.+..++.. ....+.++.|+|+|||.++++.
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~  155 (257)
T COG0500          78 VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLP-PAKALRELLRVLKPGGRLVLSD  155 (257)
T ss_pred             EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence            37788777776555421     2445555544  89998 599999 8777766654 4689999999999999999986


Q ss_pred             CC
Q 017983           78 TP   79 (363)
Q Consensus        78 ~~   79 (363)
                      ..
T Consensus       156 ~~  157 (257)
T COG0500         156 LL  157 (257)
T ss_pred             cc
Confidence            63

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=96.27  E-value=0.011  Score=59.26  Aligned_cols=106  Identities=10%  Similarity=0.198  Sum_probs=63.2

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC-------CC--------
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT-------YP--------  280 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp-------fp--------  280 (363)
                      +|||++||+|.|+..|++...   .|+++|.+ ++++.+.+.    |+  +.++....+..++       ++        
T Consensus       200 ~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       200 DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             cEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            599999999999999987643   47777887 788766654    22  2222222222121       10        


Q ss_pred             -CCcceeeeccccccccccCCH-HHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCceee
Q 017983          281 -RTYDLLHSSFLLSDVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTN  342 (363)
Q Consensus       281 -~sFDlVh~~~~l~~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~  342 (363)
                       ..||+|+..      |.+.++ ..++.-   +++|++.++|+=... .-..++.|.++  |++.
T Consensus       277 ~~~~d~v~lD------PPR~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~  330 (353)
T TIGR02143       277 SYNCSTIFVD------PPRAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVE  330 (353)
T ss_pred             cCCCCEEEEC------CCCCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence             127887765      223332 334444   445899999985554 44556666544  6543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=96.26  E-value=0.0046  Score=60.78  Aligned_cols=82  Identities=20%  Similarity=0.146  Sum_probs=53.1

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC-C--
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-R--  281 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp-~--  281 (363)
                      .++.|.+.++  ..++|++||.|+++.++++..-....|++.|.. .+++.+.++-    -+..+++.......+. .  
T Consensus        11 vl~~L~~~pg--~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~   88 (296)
T PRK00050         11 VVDALAIKPD--GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGL   88 (296)
T ss_pred             HHHhhCCCCC--CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCC
Confidence            3444544443  499999999999999999763112347888988 8998887652    2334444332222222 2  


Q ss_pred             -Ccceeeeccccc
Q 017983          282 -TYDLLHSSFLLS  293 (363)
Q Consensus       282 -sFDlVh~~~~l~  293 (363)
                       +||.|++....+
T Consensus        89 ~~vDgIl~DLGvS  101 (296)
T PRK00050         89 GKVDGILLDLGVS  101 (296)
T ss_pred             CccCEEEECCCcc
Confidence             899999876555

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.24  E-value=0.018  Score=57.58  Aligned_cols=118  Identities=14%  Similarity=0.102  Sum_probs=70.8

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcC----c---eeeeccccccCCCCCCCcceeeecccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG----L---IGMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rg----l---~~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ..+.|||+|||.|.+.-.-+..|+.  .|.++.+|+|.+.|+.--    +   |.++-.--| ....|...|++++.-+-
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiE-dieLPEk~DviISEPMG  253 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASEMAQYARKLVASNNLADRITVIPGKIE-DIELPEKVDVIISEPMG  253 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcc--eEEEEehhHHHHHHHHHHhcCCccceEEEccCccc-cccCchhccEEEeccch
Confidence            3579999999999754333333322  356677778887665421    1   223222112 25678899999875332


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEE-------cCHHHHHHHHHHHHhCCcee
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ-------DTLEMINKLKPVLHSLQWST  341 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~-------D~~~~~~~i~~l~~~l~W~~  341 (363)
                      -.+-+. .+...-.-.+|-|+|.|..+=+       ...+....++...+++-|--
T Consensus       254 ~mL~NE-RMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQ  308 (517)
T KOG1500|consen  254 YMLVNE-RMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQ  308 (517)
T ss_pred             hhhhhH-HHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhh
Confidence            222232 2333333456999999986533       34566677888888888853

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.21  E-value=0.012  Score=60.39  Aligned_cols=76  Identities=17%  Similarity=0.283  Sum_probs=50.3

Q ss_pred             CCCCHHHHHHHHHc----CCCcee--eecccCCCCC--CCCCccEEEe----CC-ccc-c-----cccC----------C
Q 017983            6 KDEHEAQIQFALER----GIPAIL--SVIGTQKLTF--PDDAYDLIHC----AR-CRV-H-----WDAQ----------G   56 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~--~~~~~~~LPf--pd~sFD~v~c----s~-~~~-~-----~~~~----------~   56 (363)
                      -|.++..++.+.++    |+.+.+  ...++..+++  ++++||.|++    |. ... +     |...          .
T Consensus       268 ~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ  347 (426)
T TIGR00563       268 LDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQ  347 (426)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHH
Confidence            47888888777655    666433  3334444555  6789999985    32 111 1     1111          1


Q ss_pred             CchhhhhcccccCCeEEEEEeCCCC
Q 017983           57 GKPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        57 ~~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      ..+|.++.|+|||||+|++|+-.+.
T Consensus       348 ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       348 SEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            3589999999999999999977554

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=96.20  E-value=0.0029  Score=58.35  Aligned_cols=68  Identities=22%  Similarity=0.358  Sum_probs=52.9

Q ss_pred             CCCCHHHHHHHHHcC----C--CceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALERG----I--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~erg----~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.++.+++.|+++.    .  .+.+.+.+.+.++   ++||+|+++..++|++. +...++.++.|++++|+++.++
T Consensus        83 vD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021        83 VDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            388999999998872    2  3556666677766   89999999988888753 3457899999999988877765

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK04266 fibrillarin; Provisional

Probab=96.20  E-value=0.0061  Score=57.51  Aligned_cols=98  Identities=11%  Similarity=0.134  Sum_probs=53.6

Q ss_pred             CCCHHHHHHHHHc--CCC-ceeeecccCC----CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            7 DEHEAQIQFALER--GIP-AILSVIGTQK----LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         7 D~~~~qvq~A~er--g~p-~~~~~~~~~~----LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      |.++.+++.+.++  ..+ +.+...++..    .+++ .+||+|++.... +|.  ...+|.|+.|+|||||+|+++.+-
T Consensus       103 D~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~~-p~~--~~~~L~~~~r~LKpGG~lvI~v~~  178 (226)
T PRK04266        103 EFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVAQ-PNQ--AEIAIDNAEFFLKDGGYLLLAIKA  178 (226)
T ss_pred             ECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCCC-hhH--HHHHHHHHHHhcCCCcEEEEEEec
Confidence            7888777754333  112 3444445432    2334 569999875321 221  134689999999999999997442


Q ss_pred             --CCCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           80 --VYRHDDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        80 --~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                        +-...++ ....+......+..+.+.+...
T Consensus       179 ~~~d~~~~~-~~~~~~~~~~l~~aGF~~i~~~  209 (226)
T PRK04266        179 RSIDVTKDP-KEIFKEEIRKLEEGGFEILEVV  209 (226)
T ss_pred             ccccCcCCH-HHHHHHHHHHHHHcCCeEEEEE
Confidence              1111111 1222333355555566666543

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=96.19  E-value=0.0047  Score=56.03  Aligned_cols=119  Identities=15%  Similarity=0.195  Sum_probs=64.4

Q ss_pred             CCceEEEecccccHHHHHhh--cCCCe------EEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CC
Q 017983          220 SVRNVMDMNASYGGFAAALI--DQPLW------VMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RT  282 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~--~~~v~------v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~s  282 (363)
                      ....|||-=||+|++..+-+  ..++.      ...+.++|.. +++..+.+.    |+   +.... +....+|++ ++
T Consensus        28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~-~D~~~l~~~~~~  106 (179)
T PF01170_consen   28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ-WDARELPLPDGS  106 (179)
T ss_dssp             TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE---GGGGGGTTSB
T ss_pred             CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe-cchhhcccccCC
Confidence            34689999999999874432  22222      1125677877 677655433    32   23332 222347766 99


Q ss_pred             cceeeecccccc-ccc----cCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983          283 YDLLHSSFLLSD-VTQ----RCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       283 FDlVh~~~~l~~-~~~----~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~  343 (363)
                      +|.|+++-=+-. +..    ..-...++.|+.|+|+|...+++.....    +++.+....|+...
T Consensus       107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~----~~~~~~~~~~~~~~  168 (179)
T PF01170_consen  107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRE----LEKALGLKGWRKRK  168 (179)
T ss_dssp             SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCC----HHHHHTSTTSEEEE
T ss_pred             CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH----HHHHhcchhhceEE
Confidence            999999721110 000    1113567899999999955555555433    34444444665443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=96.18  E-value=0.022  Score=56.58  Aligned_cols=120  Identities=16%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             CCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHh---c--Cc---eeeec-ccccc-C--CCCC-CCc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD---R--GL---IGMYH-DWCES-F--NTYP-RTY  283 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~---R--gl---~~~~~-d~~e~-~--lpfp-~sF  283 (363)
                      +...+|||||||+|..+..|+.+ ..|  .++++|.+ ..++.|.+   +  ++   +.+.+ ..... +  +..+ ..|
T Consensus       113 ~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f  190 (321)
T PRK11727        113 GANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF  190 (321)
T ss_pred             CCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce
Confidence            44578999999999888777653 223  46777776 55554432   2  22   22221 10000 1  1134 789


Q ss_pred             ceeeeccccccccccCC----HHHHHHH----------------HhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983          284 DLLHSSFLLSDVTQRCD----IADVAVE----------------MDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~----~~~~L~E----------------m~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~  343 (363)
                      |+|+|+==|+.  ....    -.+-.+.                ..+.+-+||.+.+...  ++.+-..+++...|-..+
T Consensus       191 DlivcNPPf~~--s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~--mi~eS~~~~~~~gwftsm  266 (321)
T PRK11727        191 DATLCNPPFHA--SAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKR--MIEESKAFAKQVLWFTSL  266 (321)
T ss_pred             EEEEeCCCCcC--cchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehH--hhHHHHHHHhhCcEEEEE
Confidence            99999832221  1000    0011111                1234557888766544  334446777777776555


Q ss_pred             e
Q 017983          344 Y  344 (363)
Q Consensus       344 ~  344 (363)
                      .
T Consensus       267 v  267 (321)
T PRK11727        267 V  267 (321)
T ss_pred             e
Confidence            3

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.17  E-value=0.0059  Score=60.14  Aligned_cols=74  Identities=20%  Similarity=0.227  Sum_probs=57.1

Q ss_pred             CCcCCCCHHHHHHHHHc-CCCceeee--cccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            3 LAPKDEHEAQIQFALER-GIPAILSV--IGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         3 ~ap~D~~~~qvq~A~er-g~p~~~~~--~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |-|....-.|-+++.+- |.......  ++.+.||. .++||+|+|.-++.|-. ++-..|.++...|||||.|++-+-
T Consensus       144 iDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLETl  220 (315)
T PF08003_consen  144 IDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRR-SPLDHLKQLKDSLRPGGELVLETL  220 (315)
T ss_pred             ECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccC-CHHHHHHHHHHhhCCCCEEEEEEe
Confidence            44556666777777655 44443333  57999999 89999999999998855 477899999999999999998754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.15  E-value=0.0025  Score=62.33  Aligned_cols=47  Identities=17%  Similarity=0.410  Sum_probs=38.8

Q ss_pred             CCCCC-CCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983           32 KLTFP-DDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        32 ~LPfp-d~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      ..||| .+.||+|+|.-+++|+... ..+++..+.+.|+|||+|++...
T Consensus       215 ~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        215 AKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             CCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            33554 6899999999999998643 46899999999999999988755

>PRK14968 putative methyltransferase; Provisional

Probab=96.13  E-value=0.047  Score=48.28  Aligned_cols=92  Identities=17%  Similarity=0.233  Sum_probs=56.7

Q ss_pred             CCCHHHHHHHHHc----CCC---ceeeecccCCCCCCCCCccEEEeCCccccccc----------------C----CCch
Q 017983            7 DEHEAQIQFALER----GIP---AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA----------------Q----GGKP   59 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p---~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~----------------~----~~~~   59 (363)
                      |.++.+++.|+++    +..   +.+...+... ++++++||+|+++.-..+...                +    ...+
T Consensus        52 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (188)
T PRK14968         52 DINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRF  130 (188)
T ss_pred             ECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHH
Confidence            7888888888654    333   4444444433 567779999998643222100                0    1236


Q ss_pred             hhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983           60 LLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVA  107 (363)
Q Consensus        60 l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~  107 (363)
                      +.++.|+|||||.+++..+...  ..      ..+..+.....++...
T Consensus       131 i~~~~~~Lk~gG~~~~~~~~~~--~~------~~l~~~~~~~g~~~~~  170 (188)
T PRK14968        131 LDEVGRYLKPGGRILLLQSSLT--GE------DEVLEYLEKLGFEAEV  170 (188)
T ss_pred             HHHHHHhcCCCeEEEEEEcccC--CH------HHHHHHHHHCCCeeee
Confidence            8999999999999988766321  11      2455566666665544

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.12  E-value=0.021  Score=56.76  Aligned_cols=98  Identities=10%  Similarity=0.084  Sum_probs=59.3

Q ss_pred             ceEEEecccccHHHH----HhhcCCCeEEEEeecCCc-chHHHHHhcCc---------eeeeccccc--cCCCC---CCC
Q 017983          222 RNVMDMNASYGGFAA----ALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---------IGMYHDWCE--SFNTY---PRT  282 (363)
Q Consensus       222 r~VLDvGCG~G~faa----~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl---------~~~~~d~~e--~~lpf---p~s  282 (363)
                      ..++|+|||.|.=..    +|...+. ....+|+|.| ++|+.+.++-.         .++.+|+..  ..+|=   +..
T Consensus        78 ~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~  156 (319)
T TIGR03439        78 SMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR  156 (319)
T ss_pred             CEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence            489999999997443    3432221 2357999999 78876655422         122222211  11221   234


Q ss_pred             cceeeec-cccccccccCCHHHHHHHHhH-hccCCeEEEEE
Q 017983          283 YDLLHSS-FLLSDVTQRCDIADVAVEMDR-ILRPGGYVLVQ  321 (363)
Q Consensus       283 FDlVh~~-~~l~~~~~~~~~~~~L~Em~R-VLRPGG~lii~  321 (363)
                      ..++..- ..+..+.. .....+|.++.+ .|+|||.++|.
T Consensus       157 ~r~~~flGSsiGNf~~-~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       157 PTTILWLGSSIGNFSR-PEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             ccEEEEeCccccCCCH-HHHHHHHHHHHHhhCCCCCEEEEe
Confidence            5555443 35555432 345689999999 99999999996

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.07  E-value=0.0073  Score=56.59  Aligned_cols=70  Identities=13%  Similarity=0.046  Sum_probs=50.8

Q ss_pred             CCCCHHHHHHH-HHcCCC----------------ceeeecccCCCCCC-CCCccEEEeCCcccccccC-CCchhhhhccc
Q 017983            6 KDEHEAQIQFA-LERGIP----------------AILSVIGTQKLTFP-DDAYDLIHCARCRVHWDAQ-GGKPLLELNRI   66 (363)
Q Consensus         6 ~D~~~~qvq~A-~erg~p----------------~~~~~~~~~~LPfp-d~sFD~v~cs~~~~~~~~~-~~~~l~E~~RV   66 (363)
                      -|.|+..|+.| .++|++                +.+.+.|...++.. ...||+|.-+.+++|.+.. ...++..+.++
T Consensus        65 vD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~l  144 (218)
T PRK13255         65 VELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAAL  144 (218)
T ss_pred             EccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHH
Confidence            48888888875 456654                34456666666443 3689999988888887643 35799999999


Q ss_pred             ccCCeEEEE
Q 017983           67 LRPGGFFIW   75 (363)
Q Consensus        67 LrPGG~~~~   75 (363)
                      |||||++++
T Consensus       145 L~pgG~~~l  153 (218)
T PRK13255        145 LPAGCRGLL  153 (218)
T ss_pred             cCCCCeEEE
Confidence            999996444

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=95.94  E-value=0.004  Score=62.88  Aligned_cols=49  Identities=31%  Similarity=0.493  Sum_probs=41.4

Q ss_pred             ecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983           27 VIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus        27 ~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      ..+....||+|++||.|-+..+..|-+. ...++.|+.|||+|||+++..
T Consensus       166 ~~~~~~~~fedn~fd~v~~ld~~~~~~~-~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  166 VADFGKMPFEDNTFDGVRFLEVVCHAPD-LEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             hhhhhcCCCCccccCcEEEEeecccCCc-HHHHHHHHhcccCCCceEEeH
Confidence            3346678999999999999887777554 568999999999999999875

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=95.90  E-value=0.0088  Score=55.00  Aligned_cols=66  Identities=21%  Similarity=0.302  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEE
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFI   74 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~   74 (363)
                      -|.++.+++.|+++    +.  .+.+...+   +++++++||+|+|+.+++||++. ...++.++.|++++|+.+.
T Consensus        91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580         91 SDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             EECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence            47899999999886    22  12233333   67778999999999999888743 2467888888776555443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=95.88  E-value=0.022  Score=57.26  Aligned_cols=107  Identities=10%  Similarity=0.204  Sum_probs=63.2

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC-C--------------
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT-Y--------------  279 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp-f--------------  279 (363)
                      .+|||++||+|.|+.+|+....   .|+++|.+ .+++.+.+.    |+  +.++....+..++ +              
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~  284 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL  284 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence            3699999999999999987533   46777877 777666553    32  2223222222221 1              


Q ss_pred             -CCCcceeeeccccccccccCCH-HHHHHHHhHhccCCeEEEEEcCHHHH-HHHHHHHHhCCceee
Q 017983          280 -PRTYDLLHSSFLLSDVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLEMI-NKLKPVLHSLQWSTN  342 (363)
Q Consensus       280 -p~sFDlVh~~~~l~~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~l~~~l~W~~~  342 (363)
                       ...||+|+..   .   .+.++ +.++.-+   ++|++.++++=....+ ..++.|.+  .|++.
T Consensus       285 ~~~~~D~v~lD---P---PR~G~~~~~l~~l---~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~  339 (362)
T PRK05031        285 KSYNFSTIFVD---P---PRAGLDDETLKLV---QAYERILYISCNPETLCENLETLSQ--THKVE  339 (362)
T ss_pred             cCCCCCEEEEC---C---CCCCCcHHHHHHH---HccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence             1258998875   2   22232 3344444   3489999998665543 44666654  45543

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.88  E-value=0.018  Score=54.67  Aligned_cols=96  Identities=15%  Similarity=0.150  Sum_probs=56.0

Q ss_pred             CceEEEecccccHHHHHh----hcCC-CeEEEEeecCCcchHHHHHhcCc---eeeeccccccCCC-----CC-CCccee
Q 017983          221 VRNVMDMNASYGGFAAAL----IDQP-LWVMNVVPIDAPDTLSIIFDRGL---IGMYHDWCESFNT-----YP-RTYDLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L----~~~~-v~v~~v~~~d~s~~L~~a~~Rgl---~~~~~d~~e~~lp-----fp-~sFDlV  286 (363)
                      .+++||+|.=||.-+.+.    -+.+ +..+++.+....-..+.....|.   +...+.-+...|+     +. +|||++
T Consensus        74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa  153 (237)
T KOG1663|consen   74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA  153 (237)
T ss_pred             CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence            469999998777533333    2332 22333322222223455555564   3333322211222     45 999999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +..    |+.  .+......+.-|.||+||.+++-.
T Consensus       154 FvD----adK--~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  154 FVD----ADK--DNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             EEc----cch--HHHHHHHHHHHhhcccccEEEEec
Confidence            864    543  345589999999999999888753

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.86  E-value=0.071  Score=50.48  Aligned_cols=96  Identities=17%  Similarity=0.177  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHHHc---CC--CceeeecccCCCCCCCCCccEEEeCCccccc------ccC-------------------
Q 017983            6 KDEHEAQIQFALER---GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHW------DAQ-------------------   55 (363)
Q Consensus         6 ~D~~~~qvq~A~er---g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~------~~~-------------------   55 (363)
                      -|+++.+++.|.+.   +.  .+.+...+.. -++++++||+|+|..-.+.-      ..+                   
T Consensus       138 iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~-~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~  216 (275)
T PRK09328        138 VDISPEALAVARRNAKHGLGARVEFLQGDWF-EPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDF  216 (275)
T ss_pred             EECCHHHHHHHHHHHHhCCCCcEEEEEcccc-CcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHH
Confidence            47899999999876   22  2444444442 24557899999985211110      000                   


Q ss_pred             CCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecC
Q 017983           56 GGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVD  111 (363)
Q Consensus        56 ~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~  111 (363)
                      -..++.++.++|+|||++++....   .      .-..+..+.....+..+..+.|
T Consensus       217 ~~~~~~~~~~~Lk~gG~l~~e~g~---~------~~~~~~~~l~~~gf~~v~~~~d  263 (275)
T PRK09328        217 YRRIIEQAPRYLKPGGWLLLEIGY---D------QGEAVRALLAAAGFADVETRKD  263 (275)
T ss_pred             HHHHHHHHHHhcccCCEEEEEECc---h------HHHHHHHHHHhCCCceeEEecC
Confidence            023667788999999999997541   1      1123555555666654444334

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.86  E-value=0.0099  Score=57.30  Aligned_cols=42  Identities=21%  Similarity=0.421  Sum_probs=34.5

Q ss_pred             CCcceeeecccccccc-ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          281 RTYDLLHSSFLLSDVT-QRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       281 ~sFDlVh~~~~l~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ..||+|++.++++..- +.+....++.-+-+.|||||+|++..
T Consensus       157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            3699999999998543 44456789999999999999999973

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PTZ00146 fibrillarin; Provisional

Probab=95.83  E-value=0.011  Score=57.95  Aligned_cols=66  Identities=18%  Similarity=0.133  Sum_probs=42.9

Q ss_pred             CCCHH----HHHHHHHcCCCceeeecccCC---CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEA----QIQFALERGIPAILSVIGTQK---LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~----qvq~A~erg~p~~~~~~~~~~---LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      |.++.    ++..|.+| -.+.....++..   ++++..+||+|+|... .++  +...++.++.|+|||||+|++.
T Consensus       164 D~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-~pd--q~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        164 EFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVA-QPD--QARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             ECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCC-Ccc--hHHHHHHHHHHhccCCCEEEEE
Confidence            55553    56666665 223444455432   3334568999999763 332  2345778999999999999996

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=95.83  E-value=0.023  Score=51.82  Aligned_cols=68  Identities=18%  Similarity=0.226  Sum_probs=47.5

Q ss_pred             CCCHHHHHHHHHc----CC--CceeeecccCC-CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GI--PAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~--p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.+++.|+++    |+  .+.+...++.. ++..++.||.|++....    .+...++.++.|+|||||++++...
T Consensus        72 D~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377         72 DKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGS----EKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             ECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCc----ccHHHHHHHHHHHcCCCcEEEEEee
Confidence            7888888887655    53  23444445544 45555789999985321    1234689999999999999998655

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.82  E-value=0.021  Score=52.73  Aligned_cols=66  Identities=21%  Similarity=0.160  Sum_probs=46.9

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |+. +.+...++...+...+.||+|++..+..       ....++.+.|+|||+|++...
T Consensus       108 vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~-------~~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       108 IERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP-------KIPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             EeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc-------cccHHHHHhcCcCcEEEEEEc
Confidence            47788889888765    554 4455555655544567999999875432       345678899999999998754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=95.79  E-value=0.009  Score=57.00  Aligned_cols=69  Identities=22%  Similarity=0.339  Sum_probs=46.2

Q ss_pred             CCCCCCccEEEe-----CCcccccccCCCchhhhhcccccCCeEEEEE-eCCC--CCCChhhHHHHHHHHHHHhhcceEE
Q 017983           34 TFPDDAYDLIHC-----ARCRVHWDAQGGKPLLELNRILRPGGFFIWS-ATPV--YRHDDRHRSVWNAMVNLTESMCWKA  105 (363)
Q Consensus        34 Pfpd~sFD~v~c-----s~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s-~~~~--~~~~~e~~~~~~~~~~l~~~~cw~~  105 (363)
                      .|+|.|||+|+-     |.+-+=++   ..+..|+.|||||||.++.- +.|.  |+.    .+.++.+.....+..+..
T Consensus       200 ~~~D~sfDaIiHDPPRfS~AgeLYs---eefY~El~RiLkrgGrlFHYvG~Pg~ryrG----~d~~~gVa~RLr~vGF~~  272 (287)
T COG2521         200 DFDDESFDAIIHDPPRFSLAGELYS---EEFYRELYRILKRGGRLFHYVGNPGKRYRG----LDLPKGVAERLRRVGFEV  272 (287)
T ss_pred             cCCccccceEeeCCCccchhhhHhH---HHHHHHHHHHcCcCCcEEEEeCCCCccccc----CChhHHHHHHHHhcCcee
Confidence            599999999974     22221111   25889999999999999875 3332  221    134567777778888887


Q ss_pred             EEEe
Q 017983          106 VARS  109 (363)
Q Consensus       106 ~~~~  109 (363)
                      +.+-
T Consensus       273 v~~~  276 (287)
T COG2521         273 VKKV  276 (287)
T ss_pred             eeee
Confidence            7654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=95.78  E-value=0.027  Score=58.01  Aligned_cols=75  Identities=16%  Similarity=0.317  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEe----CCcc-------cccccC----------CCch
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHC----ARCR-------VHWDAQ----------GGKP   59 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~c----s~~~-------~~~~~~----------~~~~   59 (363)
                      -|.|+.+++.|.++    |+. +.+...++..++ ++++||+|++    |-..       +.|...          ...+
T Consensus       281 vD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~i  359 (445)
T PRK14904        281 VDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAEL  359 (445)
T ss_pred             EECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHH
Confidence            48888888777654    665 456666676665 6789999995    2211       112211          1247


Q ss_pred             hhhhcccccCCeEEEEEeCCCC
Q 017983           60 LLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        60 l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      |.++.++|||||.+++++-.+.
T Consensus       360 L~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        360 LDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             HHHHHHhcCCCcEEEEEeCCCC
Confidence            9999999999999999987544

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.024  Score=53.28  Aligned_cols=91  Identities=21%  Similarity=0.271  Sum_probs=54.7

Q ss_pred             ceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHH----------------HHhcCceeeeccccccCCCCC--C
Q 017983          222 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSI----------------IFDRGLIGMYHDWCESFNTYP--R  281 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~----------------a~~Rgl~~~~~d~~e~~lpfp--~  281 (363)
                      -+.||+|.|+|.+.+.++-. +....+..+++.. +.++.                -+++|-..++...|  +.-|+  .
T Consensus        84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg--r~g~~e~a  161 (237)
T KOG1661|consen   84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG--RKGYAEQA  161 (237)
T ss_pred             cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc--cccCCccC
Confidence            48999999999876655521 1122223455543 32322                23444333333334  23455  8


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      -||.|||.-.-+         +..+|+--.|+|||.++|--.
T Consensus       162 ~YDaIhvGAaa~---------~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  162 PYDAIHVGAAAS---------ELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             CcceEEEccCcc---------ccHHHHHHhhccCCeEEEeec
Confidence            999999973333         367788889999999998643

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.76  E-value=0.02  Score=53.59  Aligned_cols=100  Identities=16%  Similarity=0.240  Sum_probs=51.3

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----------Cc---eeeeccccccCCCCCCCcceeee
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----------GL---IGMYHDWCESFNTYPRTYDLLHS  288 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----------gl---~~~~~d~~e~~lpfp~sFDlVh~  288 (363)
                      ...|||||+|++...|+...--. -+.+..+- .-.+.+.+|          |.   +++++.-|-.++|  |-|-.-..
T Consensus        63 efaDIGCGyGGLlv~Lsp~fPdt-LiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp--n~f~kgqL  139 (249)
T KOG3115|consen   63 EFADIGCGYGGLLMKLAPKFPDT-LILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP--NFFEKGQL  139 (249)
T ss_pred             eEEeeccCccchhhhccccCccc-eeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc--chhhhccc
Confidence            68999999999999998753111 01222222 112222222          11   3455443322332  33332222


Q ss_pred             ccccc-----cccccC---C--HHHHHHHHhHhccCCeEEEEEcCHH
Q 017983          289 SFLLS-----DVTQRC---D--IADVAVEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       289 ~~~l~-----~~~~~~---~--~~~~L~Em~RVLRPGG~lii~D~~~  325 (363)
                      +-.|.     |+..+.   .  -..++.|..=+||+||.++....+.
T Consensus       140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~  186 (249)
T KOG3115|consen  140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK  186 (249)
T ss_pred             ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence            22222     221110   0  1357899999999999998876554

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.75  E-value=0.012  Score=59.11  Aligned_cols=101  Identities=21%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeE--EEEeecCCcchHHHH---HhcCceee-----eccccccCCCCC--CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWV--MNVVPIDAPDTLSII---FDRGLIGM-----YHDWCESFNTYP--RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v--~~v~~~d~s~~L~~a---~~Rgl~~~-----~~d~~e~~lpfp--~sFDlVh~  288 (363)
                      ..++||+|.|.|.-+.++.+  +|-  -+++-...+..|..+   .++.....     ..+.-+.++++|  ..|++|+.
T Consensus       114 pqsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~  191 (484)
T COG5459         114 PQSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV  191 (484)
T ss_pred             cchhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence            45799999999986655543  221  011122223222111   11111111     111123467777  99999998


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ..=|-|..+.-.+...+.-...+|+|||.++|.+.
T Consensus       192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr  226 (484)
T COG5459         192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER  226 (484)
T ss_pred             hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence            77666655544466688889999999999999975

>TIGR03438 probable methyltransferase

Probab=95.74  E-value=0.0084  Score=58.59  Aligned_cols=76  Identities=13%  Similarity=0.153  Sum_probs=49.8

Q ss_pred             CCcCCCCHHHHHHHHHc------CCCceeeecccCC-CCCCCCC---ccEEE-eCCccccccc-CCCchhhhhcccccCC
Q 017983            3 LAPKDEHEAQIQFALER------GIPAILSVIGTQK-LTFPDDA---YDLIH-CARCRVHWDA-QGGKPLLELNRILRPG   70 (363)
Q Consensus         3 ~ap~D~~~~qvq~A~er------g~p~~~~~~~~~~-LPfpd~s---FD~v~-cs~~~~~~~~-~~~~~l~E~~RVLrPG   70 (363)
                      +.+-|+|+.+++.|.++      ++++...+.+... ++++...   .++++ +.....++.. +...+|+++.++|+||
T Consensus        91 ~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg  170 (301)
T TIGR03438        91 YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG  170 (301)
T ss_pred             EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence            45679999999999876      2333444556544 5665443   23333 3334444443 2356899999999999


Q ss_pred             eEEEEEeC
Q 017983           71 GFFIWSAT   78 (363)
Q Consensus        71 G~~~~s~~   78 (363)
                      |.|++...
T Consensus       171 G~~lig~d  178 (301)
T TIGR03438       171 GGLLIGVD  178 (301)
T ss_pred             CEEEEecc
Confidence            99999855

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=95.71  E-value=0.0077  Score=60.03  Aligned_cols=74  Identities=24%  Similarity=0.275  Sum_probs=52.5

Q ss_pred             CCCCHHHHHHHHHcC---------------CCceeeecccC------CCCCCCCCccEEEeCCcccccccCC---Cchhh
Q 017983            6 KDEHEAQIQFALERG---------------IPAILSVIGTQ------KLTFPDDAYDLIHCARCRVHWDAQG---GKPLL   61 (363)
Q Consensus         6 ~D~~~~qvq~A~erg---------------~p~~~~~~~~~------~LPfpd~sFD~v~cs~~~~~~~~~~---~~~l~   61 (363)
                      -|++..-|++|.+|=               ..+.+...+..      .++.+...||+|-|-.|+|+--...   ..+|.
T Consensus        91 ~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~  170 (331)
T PF03291_consen   91 IDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLK  170 (331)
T ss_dssp             EES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHH
Confidence            388899999999884               44555555522      2344456999999998887765432   35889


Q ss_pred             hhcccccCCeEEEEEeCC
Q 017983           62 ELNRILRPGGFFIWSATP   79 (363)
Q Consensus        62 E~~RVLrPGG~~~~s~~~   79 (363)
                      -+.+.|||||+|+.+.|.
T Consensus       171 Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  171 NVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             HHHHTEEEEEEEEEEEE-
T ss_pred             HHHHhcCCCCEEEEEecC
Confidence            999999999999999993

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.70  E-value=0.017  Score=53.40  Aligned_cols=65  Identities=17%  Similarity=0.185  Sum_probs=37.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc---Cc--eeeeccccccCCCCCCCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---GL--IGMYHDWCESFNTYPRTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R---gl--~~~~~d~~e~~lpfp~sFDlVh~~~  290 (363)
                      .+.|+|+|||||.|+...+-.+..  .|.++|.. ++++++.+.   +.  +..+..   +-.-|..-||.|+.+=
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~---dv~~~~~~~dtvimNP  116 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVA---DVSDFRGKFDTVIMNP  116 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEc---chhhcCCccceEEECC
Confidence            468999999999876555544432  24455554 555554433   22  222221   1233458899888863

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=95.67  E-value=0.016  Score=57.98  Aligned_cols=73  Identities=23%  Similarity=0.381  Sum_probs=52.3

Q ss_pred             CCCCHHHHHHHHHc----CCC-c-eeeecccCCCCCCCCCccEEEeCC----cc-ccccc--C-CCchhhhhcccccCCe
Q 017983            6 KDEHEAQIQFALER----GIP-A-ILSVIGTQKLTFPDDAYDLIHCAR----CR-VHWDA--Q-GGKPLLELNRILRPGG   71 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~-~~~~~~~~~LPfpd~sFD~v~cs~----~~-~~~~~--~-~~~~l~E~~RVLrPGG   71 (363)
                      .|+.+.|++-|...    |+. . .+.+.++..|||++++||.|.|--    .. ..-..  . -..+|.++.+|||+||
T Consensus       225 ~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG  304 (347)
T COG1041         225 SDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGG  304 (347)
T ss_pred             cchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCc
Confidence            48899999998754    444 2 234448999999999999999821    10 11000  0 1258899999999999


Q ss_pred             EEEEEeC
Q 017983           72 FFIWSAT   78 (363)
Q Consensus        72 ~~~~s~~   78 (363)
                      ++++..|
T Consensus       305 ~~vf~~p  311 (347)
T COG1041         305 RIVFAAP  311 (347)
T ss_pred             EEEEecC
Confidence            9999988

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.67  E-value=0.0032  Score=59.83  Aligned_cols=103  Identities=20%  Similarity=0.208  Sum_probs=71.6

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCC-CC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQK-LT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRH   83 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~-LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~   83 (363)
                      -|+|++|+..|.|+|+==.+.+.++.. |+ -....||+|.+..++...- +.+.++.-+.+.|.|||.|++|+-..-..
T Consensus       153 vDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG-~Le~~~~~aa~~L~~gGlfaFSvE~l~~~  231 (287)
T COG4976         153 VDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLG-ALEGLFAGAAGLLAPGGLFAFSVETLPDD  231 (287)
T ss_pred             CchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhc-chhhHHHHHHHhcCCCceEEEEecccCCC
Confidence            489999999999999765566666543 44 6678999999998885544 45679999999999999999995422111


Q ss_pred             C-------hhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           84 D-------DRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        84 ~-------~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      +       .+......-+..+...-..+.+.-.
T Consensus       232 ~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~  264 (287)
T COG4976         232 GGFVLGPSQRYAHSESYVRALLAASGLEVIAIE  264 (287)
T ss_pred             CCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence            1       1111123456666666666666543

>PRK13699 putative methylase; Provisional

Probab=95.63  E-value=0.031  Score=52.69  Aligned_cols=40  Identities=13%  Similarity=0.233  Sum_probs=25.6

Q ss_pred             HHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCce
Q 017983          301 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS  340 (363)
Q Consensus       301 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~  340 (363)
                      ++.++.|+.|||||||.+++.-....+..+....+...|.
T Consensus        51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~   90 (227)
T PRK13699         51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFS   90 (227)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCE
Confidence            3578999999999999988743322233333444444444

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=95.61  E-value=0.012  Score=57.68  Aligned_cols=101  Identities=22%  Similarity=0.299  Sum_probs=58.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCC---CCCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTY---PRTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpf---p~sFDlVh~  288 (363)
                      .++|||+=|-||+|+.+.+..|+.  .|+.+|.| ..|+.+.+-    |+    +..+...+-..+..   .+.||+|++
T Consensus       124 gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            359999999999999987776643  35666777 667665544    32    11222112111211   278999997


Q ss_pred             c---cccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          289 S---FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       289 ~---~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      .   +.=+...-..+..+++....++|+|||.++++..
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            3   2111111111346788889999999999988743

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=95.55  E-value=0.098  Score=53.87  Aligned_cols=105  Identities=13%  Similarity=0.100  Sum_probs=65.5

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCC-CCCccEEEeCCccccccc--------------------CC----
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFP-DDAYDLIHCARCRVHWDA--------------------QG----   56 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfp-d~sFD~v~cs~~~~~~~~--------------------~~----   56 (363)
                      -|.|+.+++.|++.    |..+.+...+.....++ +++||+|+|+-=.++-.+                    ++    
T Consensus       281 VDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~y  360 (423)
T PRK14966        281 SDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCI  360 (423)
T ss_pred             EECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHH
Confidence            48899999998875    55556666665443343 468999999542111000                    00    


Q ss_pred             CchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecCCCc-eeEEE
Q 017983           57 GKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNR-IGFVI  119 (363)
Q Consensus        57 ~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~-~~~~i  119 (363)
                      ..++.++.+.|+|||++++....         ..-..+.++.....|..+....|..| -.+.+
T Consensus       361 r~Ii~~a~~~LkpgG~lilEiG~---------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~  415 (423)
T PRK14966        361 RTLAQGAPDRLAEGGFLLLEHGF---------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTL  415 (423)
T ss_pred             HHHHHHHHHhcCCCcEEEEEECc---------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEE
Confidence            13556667899999999987652         12346777777778877665556544 24443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.47  E-value=0.02  Score=58.88  Aligned_cols=76  Identities=18%  Similarity=0.324  Sum_probs=53.0

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCC-CCCCCccEEEeC-Cc--ccccccC------------------CCc
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT-FPDDAYDLIHCA-RC--RVHWDAQ------------------GGK   58 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP-fpd~sFD~v~cs-~~--~~~~~~~------------------~~~   58 (363)
                      -|+|+..++.+.++    |+. +.+...++..++ +.+++||.|+|- -|  .-.+..+                  ...
T Consensus       268 ~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~  347 (431)
T PRK14903        268 VDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLR  347 (431)
T ss_pred             EECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHH
Confidence            48888888887655    665 456677777776 677899999962 12  1111111                  124


Q ss_pred             hhhhhcccccCCeEEEEEeCCCC
Q 017983           59 PLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        59 ~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      .|.++.+.|||||++++|+-.+.
T Consensus       348 iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        348 IVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             HHHHHHHhcCCCCEEEEEECCCC
Confidence            68899999999999999977544

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=95.37  E-value=0.043  Score=52.65  Aligned_cols=76  Identities=12%  Similarity=0.262  Sum_probs=51.9

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEe----CCc-cc--------cccc--------CCCch
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHC----ARC-RV--------HWDA--------QGGKP   59 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~c----s~~-~~--------~~~~--------~~~~~   59 (363)
                      -|.++..++.+.++    |+. +.+...++..++...++||+|++    |-. ..        .|..        ....+
T Consensus       102 ~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~i  181 (264)
T TIGR00446       102 NEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKEL  181 (264)
T ss_pred             EcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHH
Confidence            48888888777654    654 45666677777777778999985    211 00        1111        01248


Q ss_pred             hhhhcccccCCeEEEEEeCCCC
Q 017983           60 LLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        60 l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      |.++.+.|||||++++|+-.+.
T Consensus       182 L~~a~~~lkpgG~lvYstcs~~  203 (264)
T TIGR00446       182 IDSAFDALKPGGVLVYSTCSLE  203 (264)
T ss_pred             HHHHHHhcCCCCEEEEEeCCCC
Confidence            8999999999999999977544

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=95.33  E-value=0.022  Score=52.70  Aligned_cols=69  Identities=19%  Similarity=0.349  Sum_probs=48.6

Q ss_pred             CCCHHHH----HHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQI----QFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qv----q~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s   76 (363)
                      |.|+..+    +.|.++++++...+.+.....++ +.||+|+++.++.+...+. ...+..|..-++|||++++-
T Consensus        59 D~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen   59 DISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             ESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence            4555433    45667799988888897777776 7899999987776655431 35788889999999998883

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.31  E-value=0.036  Score=50.46  Aligned_cols=105  Identities=14%  Similarity=0.144  Sum_probs=68.3

Q ss_pred             cCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----e-ee-eccccccCCCCC-CCcceee
Q 017983          216 INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----I-GM-YHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       216 i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~-~~-~~d~~e~~lpfp-~sFDlVh  287 (363)
                      +++.+...||.+|.|||-|..+++.+++.--++..+..+ +....-.++--    + +. ++.. +..--++ .-||.|+
T Consensus        44 I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~-~~l~e~~gq~~D~vi  122 (194)
T COG3963          44 IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLR-TTLGEHKGQFFDSVI  122 (194)
T ss_pred             cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHH-HHHhhcCCCeeeeEE
Confidence            455566799999999999999999988755556666655 43333222211    1 11 1110 0112256 8899999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |.-=+-.++.. .-..+|.+..--|++||.++-..
T Consensus       123 S~lPll~~P~~-~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         123 SGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             eccccccCcHH-HHHHHHHHHHHhcCCCCeEEEEE
Confidence            98666555432 23578899999999999988653

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=95.29  E-value=0.021  Score=56.49  Aligned_cols=68  Identities=18%  Similarity=0.188  Sum_probs=43.5

Q ss_pred             CCCCHHHHHHHHHcCC----------CceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEE
Q 017983            6 KDEHEAQIQFALERGI----------PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFI   74 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~----------p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~   74 (363)
                      -|.|+.+++.|+++.-          .+.+.+.+.+   ..+++||+|+|..+++|++++. ..++..+.+ +.+||. +
T Consensus       172 vD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~---~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-i  246 (315)
T PLN02585        172 SDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE---SLSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-I  246 (315)
T ss_pred             EECCHHHHHHHHHHHHhcccccccccceEEEEcchh---hcCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-E
Confidence            4899999999988731          1233333433   3368999999999999987643 234455554 455555 4


Q ss_pred             EEeC
Q 017983           75 WSAT   78 (363)
Q Consensus        75 ~s~~   78 (363)
                      ++..
T Consensus       247 Is~~  250 (315)
T PLN02585        247 ISFA  250 (315)
T ss_pred             EEeC
Confidence            5543

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=95.26  E-value=0.068  Score=47.67  Aligned_cols=68  Identities=21%  Similarity=0.305  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccC-------CCchhhhhcccccCCeEEE
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-------GGKPLLELNRILRPGGFFI   74 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-------~~~~l~E~~RVLrPGG~~~   74 (363)
                      |+++..++.|++.    ++. +.+...+.. -+++++.||+|+|.-   |+...       ...++.++.+.|||||.|+
T Consensus        62 Di~~~a~~~a~~n~~~n~~~~v~~~~~d~~-~~~~~~~fD~Iv~NP---P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~  137 (170)
T PF05175_consen   62 DINPDALELAKRNAERNGLENVEVVQSDLF-EALPDGKFDLIVSNP---PFHAGGDDGLDLLRDFIEQARRYLKPGGRLF  137 (170)
T ss_dssp             ESBHHHHHHHHHHHHHTTCTTEEEEESSTT-TTCCTTCEEEEEE------SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHhcCcccccccccccc-ccccccceeEEEEcc---chhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence            7888888888763    666 444444431 134489999999963   22211       1357899999999999997


Q ss_pred             EEeC
Q 017983           75 WSAT   78 (363)
Q Consensus        75 ~s~~   78 (363)
                      +...
T Consensus       138 lv~~  141 (170)
T PF05175_consen  138 LVIN  141 (170)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            7644

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.19  E-value=0.0099  Score=54.99  Aligned_cols=46  Identities=28%  Similarity=0.577  Sum_probs=32.4

Q ss_pred             CCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983           33 LTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        33 LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      .+.+.+.||+|+|.-+++.+... ..+++.-+.+.|+|||+|++...
T Consensus       130 ~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  130 PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence            34567899999999999998753 36799999999999999999855

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=95.14  E-value=0.061  Score=49.40  Aligned_cols=65  Identities=15%  Similarity=0.038  Sum_probs=44.0

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.+++.|+++    |+. +.+...+......+.+.||+|++..+..+       ...++.+.|+|||.+++...
T Consensus       107 d~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        107 ERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             eCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence            6678888888765    554 44444444332123589999998754322       35678899999999999755

>TIGR00536 hemK_fam HemK family putative methylases

Probab=95.10  E-value=0.22  Score=48.13  Aligned_cols=99  Identities=14%  Similarity=0.118  Sum_probs=59.9

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCC-------------ccccccc-----------C
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCAR-------------CRVHWDA-----------Q   55 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~-------------~~~~~~~-----------~   55 (363)
                      -|+|+.+++.|++.    |+.  +.+...+... +++++.||+|+|.-             ...|-+.           .
T Consensus       144 vDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~  222 (284)
T TIGR00536       144 VDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNI  222 (284)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHH
Confidence            47899999888875    554  4444445432 56666899999951             0111000           0


Q ss_pred             CCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHh-hcceEEEEEecCCCc
Q 017983           56 GGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTE-SMCWKAVARSVDSNR  114 (363)
Q Consensus        56 ~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~-~~cw~~~~~~~~~~~  114 (363)
                      -..++.++.++|+|||++++....         .....+..+.. ...|..+.-..|..|
T Consensus       223 ~~~ii~~a~~~L~~gG~l~~e~g~---------~q~~~~~~~~~~~~~~~~~~~~~D~~g  273 (284)
T TIGR00536       223 LRQIIELAPDYLKPNGFLVCEIGN---------WQQKSLKELLRIKFTWYDVENGRDLNG  273 (284)
T ss_pred             HHHHHHHHHHhccCCCEEEEEECc---------cHHHHHHHHHHhcCCCceeEEecCCCC
Confidence            124678889999999999998662         11234555555 456765554555444

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=94.92  E-value=0.14  Score=50.11  Aligned_cols=101  Identities=12%  Similarity=0.125  Sum_probs=61.9

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----------eeeeccccccCCC-CCCCccee
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----------IGMYHDWCESFNT-YPRTYDLL  286 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----------~~~~~d~~e~~lp-fp~sFDlV  286 (363)
                      +..++||=+|-|.|+.++++.+++- +-.++.++.- +.++.+++.--          +.++-+..-..+. ++++||+|
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI  153 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI  153 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence            4458999999999999999998752 2233444444 45555554411          1111111112233 44789999


Q ss_pred             eeccccccccccCC--HHHHHHHHhHhccCCeEEEEE
Q 017983          287 HSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       287 h~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++...=. ......  -..+.+.+.|.|+|+|.++..
T Consensus       154 i~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         154 IVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            9863211 110000  167899999999999999998

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.85  E-value=0.51  Score=44.36  Aligned_cols=93  Identities=20%  Similarity=0.348  Sum_probs=65.5

Q ss_pred             CceEEEecccccHHHHHhhc---CC-CeEEEEeecCCcchHHHHHhcC-ceeeeccccccCCC--CC---CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALID---QP-LWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNT--YP---RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~---~~-v~v~~v~~~d~s~~L~~a~~Rg-l~~~~~d~~e~~lp--fp---~sFDlVh~~~  290 (363)
                      ..+||=+|+-+|+....+.+   .| +.+..+.|....+.|.++.+|- ++.++.|   ++.|  |.   ...|+|.+. 
T Consensus        77 g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D---A~~P~~Y~~~Ve~VDviy~D-  152 (231)
T COG1889          77 GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILED---ARKPEKYRHLVEKVDVIYQD-  152 (231)
T ss_pred             CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecc---cCCcHHhhhhcccccEEEEe-
Confidence            45999999999998877766   23 3445555555557889999986 4666776   3455  32   567777765 


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                          +..+...+-+..-++..||+||++++.
T Consensus       153 ----VAQp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         153 ----VAQPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             ----cCCchHHHHHHHHHHHhcccCCeEEEE
Confidence                223344555788899999999988886

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=94.85  E-value=0.1  Score=48.70  Aligned_cols=107  Identities=19%  Similarity=0.190  Sum_probs=65.4

Q ss_pred             cccCCCCCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc--------chHHHHHhcCc--eeeeccccccCCCCC
Q 017983          214 LAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP--------DTLSIIFDRGL--IGMYHDWCESFNTYP  280 (363)
Q Consensus       214 l~i~~~~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s--------~~L~~a~~Rgl--~~~~~d~~e~~lpfp  280 (363)
                      .+++++  .+|.|+=-|-|.|.+-|...   ...|-+++|.+..        .+-.++++.+.  ...+..-- -.++-|
T Consensus        44 aGlkpg--~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~-~A~~~p  120 (238)
T COG4798          44 AGLKPG--ATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL-VALGAP  120 (238)
T ss_pred             eccCCC--CEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc-cccCCC
Confidence            356665  49999999999999888763   1256677777652        12233444433  11111100 013322


Q ss_pred             CCcceeeecccccccc----ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          281 RTYDLLHSSFLLSDVT----QRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       281 ~sFDlVh~~~~l~~~~----~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +-.|++.....-|.++    +.....++-.++++.|||||.+.+.|.
T Consensus       121 q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH  167 (238)
T COG4798         121 QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH  167 (238)
T ss_pred             CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence            6667766644433222    234568899999999999999999874

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=94.83  E-value=0.026  Score=55.61  Aligned_cols=92  Identities=20%  Similarity=0.273  Sum_probs=59.7

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCC-CccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDD-AYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~-sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      -|+.+..|+.|++.    |++..........+.++.+ .||+|+|+.-+...    ..+..++.|.|||||++++|+=..
T Consensus       191 ~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl----~~La~~~~~~lkpgg~lIlSGIl~  266 (300)
T COG2264         191 VDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEVL----VELAPDIKRLLKPGGRLILSGILE  266 (300)
T ss_pred             ecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHHHH----HHHHHHHHHHcCCCceEEEEeehH
Confidence            37778888888765    6654233333444567764 99999998643331    368889999999999999998421


Q ss_pred             CCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           81 YRHDDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                              ..-+.+.+...+-.|++....
T Consensus       267 --------~q~~~V~~a~~~~gf~v~~~~  287 (300)
T COG2264         267 --------DQAESVAEAYEQAGFEVVEVL  287 (300)
T ss_pred             --------hHHHHHHHHHHhCCCeEeEEE
Confidence                    112334444445567666644

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=94.81  E-value=0.099  Score=49.27  Aligned_cols=84  Identities=17%  Similarity=0.272  Sum_probs=60.1

Q ss_pred             CCCCccEEEeCCccccccc--CCCchhhhhcccccCCeE-----EEEEeCCC---C-CCChhhHHHHHHHHHHHhhcceE
Q 017983           36 PDDAYDLIHCARCRVHWDA--QGGKPLLELNRILRPGGF-----FIWSATPV---Y-RHDDRHRSVWNAMVNLTESMCWK  104 (363)
Q Consensus        36 pd~sFD~v~cs~~~~~~~~--~~~~~l~E~~RVLrPGG~-----~~~s~~~~---~-~~~~e~~~~~~~~~~l~~~~cw~  104 (363)
                      +++.||+|.||+++--.++  ..+..++-+.+.|||+|.     |++..|.-   + ++..     .+.+..+...|++.
T Consensus       101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~-----~~~l~~im~~LGf~  175 (219)
T PF11968_consen  101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMT-----EERLREIMESLGFT  175 (219)
T ss_pred             cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccC-----HHHHHHHHHhCCcE
Confidence            4889999999998744442  236799999999999999     77776621   1 1221     35788889999998


Q ss_pred             EEEEecCCCceeEEEEecCCC
Q 017983          105 AVARSVDSNRIGFVIYQKPVS  125 (363)
Q Consensus       105 ~~~~~~~~~~~~~~i~~k~~~  125 (363)
                      .+..+ +.+..+--.|+|...
T Consensus       176 ~~~~~-~~~Kl~y~l~r~~~~  195 (219)
T PF11968_consen  176 RVKYK-KSKKLAYWLFRKSGK  195 (219)
T ss_pred             EEEEE-ecCeEEEEEEeecCC
Confidence            88765 445566667777543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=94.80  E-value=0.12  Score=49.22  Aligned_cols=123  Identities=16%  Similarity=0.235  Sum_probs=71.8

Q ss_pred             CCceEEEecccccHHHHHhhcCC-CeEEEEeecCCc-chHHHHHhc------C----ceeeeccccccCCC-CCC-Ccce
Q 017983          220 SVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDR------G----LIGMYHDWCESFNT-YPR-TYDL  285 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~-v~v~~v~~~d~s-~~L~~a~~R------g----l~~~~~d~~e~~lp-fp~-sFDl  285 (363)
                      +.++||=+|-|.|+.+.++.+.+ +.  .++.++.. ..++.+++-      +    -+.++.+.+-.++- ..+ .||+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~--~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv  153 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVE--SITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV  153 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-S--EEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcc--eEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence            46899999999999999999875 33  34444444 455554332      1    12233332322222 344 8999


Q ss_pred             eeecccccccccc-CCHHHHHHHHhHhccCCeEEEEEc-----CHHHHHHHHHHHHhCCceeeee
Q 017983          286 LHSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQD-----TLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       286 Vh~~~~l~~~~~~-~~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      |+....-...+.. ---...++.+.|.|+|||.+++.-     ..+.+..+.+..+...-.+...
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~  218 (246)
T PF01564_consen  154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPY  218 (246)
T ss_dssp             EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEE
T ss_pred             EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEE
Confidence            9975332111100 012578999999999999999863     2345566666666665555443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=94.79  E-value=0.043  Score=55.65  Aligned_cols=90  Identities=16%  Similarity=0.155  Sum_probs=60.7

Q ss_pred             eEEEecccccHHHHHhhcC--CCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983          223 NVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      +|||+-||+|.++..++.+  ++  -.|+..|.+ +.++.+.+.    ++  +.+++..+...+... +.||+|...= +
T Consensus        47 ~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f  123 (374)
T TIGR00308        47 NIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F  123 (374)
T ss_pred             EEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence            8999999999999999876  43  246677776 444433221    22  234443343334333 6799998763 3


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      .      ....++...-+.+++||.+.++
T Consensus       124 G------s~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       124 G------TPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             C------CcHHHHHHHHHhcccCCEEEEE
Confidence            2      2246999999999999999998

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK11524 putative methyltransferase; Provisional

Probab=94.78  E-value=0.076  Score=51.46  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=24.1

Q ss_pred             HHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHH
Q 017983          301 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPV  333 (363)
Q Consensus       301 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l  333 (363)
                      ++..|.|+.|+|||||.+++.-....+..+..+
T Consensus        59 l~~~l~~~~rvLK~~G~i~i~~~~~~~~~~~~~   91 (284)
T PRK11524         59 LYEWIDECHRVLKKQGTMYIMNSTENMPFIDLY   91 (284)
T ss_pred             HHHHHHHHHHHhCCCcEEEEEcCchhhhHHHHH
Confidence            357999999999999999987554444434333

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=94.72  E-value=0.12  Score=52.09  Aligned_cols=101  Identities=20%  Similarity=0.264  Sum_probs=57.9

Q ss_pred             CCCCCceEEEecccccHHHHHhhcC----CCeEEEEeecCCc-c---hHHHHHhc-Cce---eeeccccccCCC--CC--
Q 017983          217 NWSSVRNVMDMNASYGGFAAALIDQ----PLWVMNVVPIDAP-D---TLSIIFDR-GLI---GMYHDWCESFNT--YP--  280 (363)
Q Consensus       217 ~~~~~r~VLDvGCG~G~faa~L~~~----~v~v~~v~~~d~s-~---~L~~a~~R-gl~---~~~~d~~e~~lp--fp--  280 (363)
                      .+.+..+||||.++.|+=+..|+..    +..   |++.|.+ +   .|....+| |+.   -+.+|..  .++  ++  
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~i---V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~--~~~~~~~~~  227 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAI---VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDAR--RLAELLPGG  227 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCce---EEEEcCCHHHHHHHHHHHHHcCCCceEEEecccc--ccccccccc
Confidence            3444579999999999855555442    222   5677777 3   33333333 442   2233321  222  23  


Q ss_pred             CCcceeeec------ccccccc------ccCC-------HHHHHHHHhHhccCCeEEEEEc
Q 017983          281 RTYDLLHSS------FLLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       281 ~sFDlVh~~------~~l~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ..||.|.+.      .+++.=+      ...+       -..+|....++|||||.++.+.
T Consensus       228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            359999852      3332100      0001       1468888999999999999984

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=94.71  E-value=0.13  Score=50.06  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCC-----c-c----cccccCC-------------
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCAR-----C-R----VHWDAQG-------------   56 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~-----~-~----~~~~~~~-------------   56 (363)
                      -|+|+.+++.|++.    |+.  +.+...+... ++++++||+|+|.-     . .    ..+..++             
T Consensus       151 vDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~  229 (284)
T TIGR03533       151 VDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDL  229 (284)
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHH
Confidence            48899999888765    654  4445555422 45677899999851     0 0    0010001             


Q ss_pred             -CchhhhhcccccCCeEEEEEeC
Q 017983           57 -GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        57 -~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                       ..++.++.++|+|||++++...
T Consensus       230 ~~~il~~a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       230 VRRILAEAADHLNENGVLVVEVG  252 (284)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEC
Confidence             2468889999999999999866

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=94.69  E-value=0.014  Score=54.92  Aligned_cols=91  Identities=16%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCCCCcceeeecccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~  298 (363)
                      ..++||+|+|-|.....++..-   -.|.+...| .|...-..++. +-...+|.+.    .=.||+|.|-.++.-.-  
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk~ynVl~~~ew~~t----~~k~dli~clNlLDRc~--  183 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKKNYNVLTEIEWLQT----DVKLDLILCLNLLDRCF--  183 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhcCCceeeehhhhhc----CceeehHHHHHHHHhhc--
Confidence            4789999999999888776531   125566667 67777777765 2223333221    12399999987775221  


Q ss_pred             CCHHHHHHHHhHhccC-CeEEEEE
Q 017983          299 CDIADVAVEMDRILRP-GGYVLVQ  321 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRP-GG~lii~  321 (363)
                       +.-.+|..++-||+| .|.+|+.
T Consensus       184 -~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  184 -DPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             -ChHHHHHHHHHHhccCCCcEEEE
Confidence             346799999999999 9998886

>TIGR00438 rrmJ cell division protein FtsJ

Probab=94.66  E-value=0.064  Score=48.39  Aligned_cols=44  Identities=23%  Similarity=0.341  Sum_probs=32.0

Q ss_pred             CCCCCccEEEeCCccc---ccccC-------CCchhhhhcccccCCeEEEEEeC
Q 017983           35 FPDDAYDLIHCARCRV---HWDAQ-------GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        35 fpd~sFD~v~cs~~~~---~~~~~-------~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      +++++||+|+|..+.+   +|..+       ...+|.++.|+|||||++++...
T Consensus        94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438        94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            6788999999854321   12211       14689999999999999999754

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=94.54  E-value=0.05  Score=51.53  Aligned_cols=72  Identities=7%  Similarity=-0.035  Sum_probs=53.6

Q ss_pred             CCCCHHHHHHHHH-----------------cCCCceeeecccCCCCCCC---CCccEEEeCCcccccccC-CCchhhhhc
Q 017983            6 KDEHEAQIQFALE-----------------RGIPAILSVIGTQKLTFPD---DAYDLIHCARCRVHWDAQ-GGKPLLELN   64 (363)
Q Consensus         6 ~D~~~~qvq~A~e-----------------rg~p~~~~~~~~~~LPfpd---~sFD~v~cs~~~~~~~~~-~~~~l~E~~   64 (363)
                      -|.|+..|+.+.+                 +|..+.+.+.|.-.|+.+.   +.||+|.=..++++.+.+ ..++...|.
T Consensus        71 vDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~  150 (226)
T PRK13256         71 IELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMML  150 (226)
T ss_pred             EecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHH
Confidence            3778888887654                 3667888888888887532   689998755555555443 467999999


Q ss_pred             ccccCCeEEEEEe
Q 017983           65 RILRPGGFFIWSA   77 (363)
Q Consensus        65 RVLrPGG~~~~s~   77 (363)
                      ++|+|||.+++..
T Consensus       151 ~lL~pgg~llll~  163 (226)
T PRK13256        151 EVCSNNTQILLLV  163 (226)
T ss_pred             HHhCCCcEEEEEE
Confidence            9999999988863

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=0.0079  Score=54.45  Aligned_cols=79  Identities=15%  Similarity=0.231  Sum_probs=55.0

Q ss_pred             CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecCC
Q 017983           33 LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDS  112 (363)
Q Consensus        33 LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~  112 (363)
                      +--.-+.||.|.|+.|+. +.+.....+.-+.+.|||.|..++++|   +....+...++.+.++-  +|-.+-..|+  
T Consensus        97 sq~eq~tFDiIlaADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsP---RRg~sL~kF~de~~~~g--f~v~l~enyd--  168 (201)
T KOG3201|consen   97 SQQEQHTFDIILAADCLF-FDEHHESLVDTIKSLLRPSGRALLFSP---RRGQSLQKFLDEVGTVG--FTVCLEENYD--  168 (201)
T ss_pred             HHHhhCcccEEEeccchh-HHHHHHHHHHHHHHHhCcccceeEecC---cccchHHHHHHHHHhce--eEEEecccHh--
Confidence            445557999999999983 233335688889999999999999999   66666555666555443  4544444453  


Q ss_pred             CceeEEEEecC
Q 017983          113 NRIGFVIYQKP  123 (363)
Q Consensus       113 ~~~~~~i~~k~  123 (363)
                          .+|||+.
T Consensus       169 ----e~iwqrh  175 (201)
T KOG3201|consen  169 ----EAIWQRH  175 (201)
T ss_pred             ----HHHHHHH
Confidence                4778764

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.51  E-value=0.059  Score=50.38  Aligned_cols=113  Identities=16%  Similarity=0.298  Sum_probs=59.1

Q ss_pred             CceEEEecccccHHHHHhhcC---C--CeEEEEeecCCcchHHHHHhcCceeeeccccccCC--CCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ---P--LWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFN--TYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~---~--v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~l--pfp-~sFDlVh~~~~l  292 (363)
                      ..+|+|+||-+|+++..++++   +  +.+.++.|.+....+.  .=+|-+  ....|...+  -++ ..+|+|.+...=
T Consensus        46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~--~iq~d~--~~~~~~~~l~~~l~~~~~DvV~sD~ap  121 (205)
T COG0293          46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVI--FLQGDI--TDEDTLEKLLEALGGAPVDVVLSDMAP  121 (205)
T ss_pred             CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCce--EEeeec--cCccHHHHHHHHcCCCCcceEEecCCC
Confidence            359999999999998877663   1  3445566665431110  001100  000000001  133 346888754322


Q ss_pred             --------ccccccCCHHHHHHHHh-HhccCCeEEEEEc-----CHHHHHHHHHHHHhCC
Q 017983          293 --------SDVTQRCDIADVAVEMD-RILRPGGYVLVQD-----TLEMINKLKPVLHSLQ  338 (363)
Q Consensus       293 --------~~~~~~~~~~~~L~Em~-RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~  338 (363)
                              .|...- .+..+..||. ++|+|||.+++-+     ..+.+..++++-+.++
T Consensus       122 ~~~g~~~~Dh~r~~-~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~  180 (205)
T COG0293         122 NTSGNRSVDHARSM-YLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVK  180 (205)
T ss_pred             CcCCCccccHHHHH-HHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeE
Confidence                    222111 1234445554 5999999999974     4556666666554443

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.38  E-value=0.032  Score=54.18  Aligned_cols=73  Identities=12%  Similarity=0.246  Sum_probs=53.1

Q ss_pred             CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChh-------hHHHHHHHHHHHhhcceEEEEEe
Q 017983           37 DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDR-------HRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        37 d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e-------~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      .++||+|++.. .+.-..+--.+|..+.++|||||+++=-+|..|..-+-       ..-.+++|..+++.+.|+...+.
T Consensus       163 ~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~  241 (270)
T PF07942_consen  163 KGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE  241 (270)
T ss_pred             CCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence            37999998642 12212223458999999999999998889987753332       22238999999999999998876


Q ss_pred             c
Q 017983          110 V  110 (363)
Q Consensus       110 ~  110 (363)
                      .
T Consensus       242 ~  242 (270)
T PF07942_consen  242 S  242 (270)
T ss_pred             E
Confidence            3

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=94.33  E-value=0.031  Score=50.53  Aligned_cols=44  Identities=16%  Similarity=0.326  Sum_probs=35.6

Q ss_pred             CCCCcceeeecccccccc--------ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          279 YPRTYDLLHSSFLLSDVT--------QRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       279 fp~sFDlVh~~~~l~~~~--------~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |.++||.+.|-+.++|..        ++..-...+.++.|+|||||.+++.-
T Consensus        60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v  111 (177)
T PF03269_consen   60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV  111 (177)
T ss_pred             hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence            678999999999998842        22233678999999999999999974

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=94.28  E-value=0.17  Score=53.13  Aligned_cols=41  Identities=20%  Similarity=0.155  Sum_probs=29.1

Q ss_pred             CceEEEecccccHHHHHhhcCC-------CeEEEEeecCCc-chHHHHH
Q 017983          221 VRNVMDMNASYGGFAAALIDQP-------LWVMNVVPIDAP-DTLSIIF  261 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~-------v~v~~v~~~d~s-~~L~~a~  261 (363)
                      ..+|||.+||+|+|..+++++.       ....++.+.|.. ..+..+.
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~   80 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK   80 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence            4589999999999988887531       123577888877 5555444

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=94.27  E-value=0.049  Score=53.25  Aligned_cols=69  Identities=19%  Similarity=0.267  Sum_probs=51.6

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      ++|++|...|.+|    |++  +.+.   .+..+...+.||.|++-...+|+.. +-..++.-+.++|+|||.+++-+=
T Consensus       102 TlS~~Q~~~~~~r~~~~gl~~~v~v~---l~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I  177 (283)
T COG2230         102 TLSEEQLAYAEKRIAARGLEDNVEVR---LQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI  177 (283)
T ss_pred             eCCHHHHHHHHHHHHHcCCCcccEEE---eccccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence            6799999998875    665  3333   3344444455999999988888864 235799999999999999998643

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=94.26  E-value=0.12  Score=51.33  Aligned_cols=62  Identities=24%  Similarity=0.433  Sum_probs=47.1

Q ss_pred             CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE--------cC--------HH-HHHHHHHHHHhCCceeee
Q 017983          281 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ--------DT--------LE-MINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       281 ~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~--------D~--------~~-~~~~i~~l~~~l~W~~~~  343 (363)
                      ++||+|+..+.+-   ...++-+.|.-|..+|||||.++=.        |.        ++ ..+.+..+++.+.|++..
T Consensus       258 ~~~d~VvTcfFID---Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k  334 (369)
T KOG2798|consen  258 GSYDVVVTCFFID---TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK  334 (369)
T ss_pred             CccceEEEEEEee---chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence            3699998875554   2236889999999999999987742        31        12 368899999999999877


Q ss_pred             ec
Q 017983          344 YH  345 (363)
Q Consensus       344 ~~  345 (363)
                      +.
T Consensus       335 e~  336 (369)
T KOG2798|consen  335 ER  336 (369)
T ss_pred             ee
Confidence            63

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=94.25  E-value=0.095  Score=53.97  Aligned_cols=75  Identities=20%  Similarity=0.425  Sum_probs=49.3

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCC--CCCCCCccEEEeCC-cc-----c-----ccccC----------CC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKL--TFPDDAYDLIHCAR-CR-----V-----HWDAQ----------GG   57 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~L--Pfpd~sFD~v~cs~-~~-----~-----~~~~~----------~~   57 (363)
                      -|+++.+++.|+++    |+. +.+...++..+  +++ ++||+|++.- |.     -     .|...          ..
T Consensus       281 vDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~  359 (444)
T PRK14902        281 LDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQL  359 (444)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHH
Confidence            48888888887654    655 45555666555  355 8899999631 11     0     11100          02


Q ss_pred             chhhhhcccccCCeEEEEEeCCCC
Q 017983           58 KPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        58 ~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      .+|.++.|+|||||.+++|+-.+.
T Consensus       360 ~iL~~a~~~LkpGG~lvystcs~~  383 (444)
T PRK14902        360 EILESVAQYLKKGGILVYSTCTIE  383 (444)
T ss_pred             HHHHHHHHHcCCCCEEEEEcCCCC
Confidence            478999999999999999876443

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=94.15  E-value=0.046  Score=52.32  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=51.0

Q ss_pred             CCCHHHHHHHHHcC------CCceeeecccCC--CCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEe
Q 017983            7 DEHEAQIQFALERG------IPAILSVIGTQK--LTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         7 D~~~~qvq~A~erg------~p~~~~~~~~~~--LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      |-|...|.+-.+..      +.+.+..++...  -|.+.+++|.|++-.++...+.+ ...++..++|+|||||.+++..
T Consensus       104 Dfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD  183 (264)
T KOG2361|consen  104 DFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD  183 (264)
T ss_pred             CCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence            45555565555442      222223333333  37788999999987766555443 4679999999999999999998


Q ss_pred             CCCC
Q 017983           78 TPVY   81 (363)
Q Consensus        78 ~~~~   81 (363)
                      .-.|
T Consensus       184 Yg~~  187 (264)
T KOG2361|consen  184 YGRY  187 (264)
T ss_pred             cccc
Confidence            7655

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.03  E-value=0.064  Score=48.70  Aligned_cols=119  Identities=14%  Similarity=0.229  Sum_probs=70.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc----chHHHHHhcCceee--------eccccccCCCCC-CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP----DTLSIIFDRGLIGM--------YHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s----~~L~~a~~Rgl~~~--------~~d~~e~~lpfp-~sFDlVh  287 (363)
                      .+.||.+|.|.-+++--|....+..-+|--.|..    ..++-+..+.....        .+-| .+++--. ++||+|.
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~-~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW-GAQSQQEQHTFDIIL  108 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh-hhHHHHhhCcccEEE
Confidence            3789999999988887776543332233333433    34555555542111        1111 2334445 8999999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH--HHHHHHHHHHHhCCceeee
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL--EMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~l~~~l~W~~~~  343 (363)
                      |+.|+-.=   +..+.++.-|.+.|||.|..++.-..  +.+++..+.+...-..+..
T Consensus       109 aADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l  163 (201)
T KOG3201|consen  109 AADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL  163 (201)
T ss_pred             eccchhHH---HHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence            99887531   12367899999999999998887432  2333444444333344433

>PRK00811 spermidine synthase; Provisional

Probab=94.01  E-value=0.13  Score=49.86  Aligned_cols=71  Identities=14%  Similarity=0.161  Sum_probs=47.8

Q ss_pred             CCCHHHHHHHHHcC------C---C-ceeeecccCC-CCCCCCCccEEEeCCcccccccC----CCchhhhhcccccCCe
Q 017983            7 DEHEAQIQFALERG------I---P-AILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQ----GGKPLLELNRILRPGG   71 (363)
Q Consensus         7 D~~~~qvq~A~erg------~---p-~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~----~~~~l~E~~RVLrPGG   71 (363)
                      |+++..++.|++.-      .   | +.+...|+.. ++..++.||+|++... -++...    ...+++++.|.|+|||
T Consensus       107 Eid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gG  185 (283)
T PRK00811        107 EIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDST-DPVGPAEGLFTKEFYENCKRALKEDG  185 (283)
T ss_pred             eCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCC-CCCCchhhhhHHHHHHHHHHhcCCCc
Confidence            67888999998751      1   1 3455555433 4556789999998543 233211    1357889999999999


Q ss_pred             EEEEEeC
Q 017983           72 FFIWSAT   78 (363)
Q Consensus        72 ~~~~s~~   78 (363)
                      .+++...
T Consensus       186 vlv~~~~  192 (283)
T PRK00811        186 IFVAQSG  192 (283)
T ss_pred             EEEEeCC
Confidence            9998643

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=93.94  E-value=0.03  Score=51.16  Aligned_cols=97  Identities=15%  Similarity=0.269  Sum_probs=53.9

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC---CC-CCcceeeec
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT---YP-RTYDLLHSS  289 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp---fp-~sFDlVh~~  289 (363)
                      .+|||+=||+|.++.+-+.+|+.  .|+-++.+ +.+..+.+-    +.   ..++...+...++   .. ..||+|++.
T Consensus        44 ~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD  121 (183)
T PF03602_consen   44 ARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD  121 (183)
T ss_dssp             -EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred             CeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence            59999999999999988888854  35555655 333322221    21   1222211111121   24 899999987


Q ss_pred             cccccccccCCHHHHHHHHh--HhccCCeEEEEEcC
Q 017983          290 FLLSDVTQRCDIADVAVEMD--RILRPGGYVLVQDT  323 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~--RVLRPGG~lii~D~  323 (363)
                         ..+.....+..++.-+.  .+|+++|.+++--.
T Consensus       122 ---PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen  122 ---PPYAKGLYYEELLELLAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             ----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             ---CCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence               43332111355666665  79999999988653

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=93.63  E-value=0.098  Score=53.16  Aligned_cols=72  Identities=10%  Similarity=0.008  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHHc----CCC----ceeeecccCCCCCCCCCccEEEeCCccccc---ccC-CCchhhhhcccccCCeEE
Q 017983            6 KDEHEAQIQFALER----GIP----AILSVIGTQKLTFPDDAYDLIHCARCRVHW---DAQ-GGKPLLELNRILRPGGFF   73 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p----~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~---~~~-~~~~l~E~~RVLrPGG~~   73 (363)
                      -|+|+..++.|++.    +..    +.+...+... .++..+||+|+|.-..+.-   .++ ..+++.++.|+|||||.|
T Consensus       258 vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L  336 (378)
T PRK15001        258 VDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL  336 (378)
T ss_pred             EECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEE
Confidence            48899999999864    221    2333333211 2456789999997544221   111 135789999999999999


Q ss_pred             EEEeC
Q 017983           74 IWSAT   78 (363)
Q Consensus        74 ~~s~~   78 (363)
                      ++...
T Consensus       337 ~iV~n  341 (378)
T PRK15001        337 YIVAN  341 (378)
T ss_pred             EEEEe
Confidence            99853

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=93.55  E-value=0.16  Score=49.32  Aligned_cols=107  Identities=13%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             CCCceEEEecccccHHHHHhhcC------CCeEEEEeecCCc-chHHHHHh----cCce----eeeccccccCCCCC--C
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQ------PLWVMNVVPIDAP-DTLSIIFD----RGLI----GMYHDWCESFNTYP--R  281 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~------~v~v~~v~~~d~s-~~L~~a~~----Rgl~----~~~~d~~e~~lpfp--~  281 (363)
                      ....+|||-+||+|+|..++.++      .....++.+.|.. .+..++.-    +|..    .+.+...-....+.  .
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~  124 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ  124 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            34568999999999998777652      0112356677776 44444432    3321    12221100001121  5


Q ss_pred             Ccceeeeccccccc--c---------------ccCCH-HHHHHHHhHhccCCeEEEEEcCHH
Q 017983          282 TYDLLHSSFLLSDV--T---------------QRCDI-ADVAVEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       282 sFDlVh~~~~l~~~--~---------------~~~~~-~~~L~Em~RVLRPGG~lii~D~~~  325 (363)
                      .||+|+++-=|...  .               ..... ..++.-+.+.|++||++++.-...
T Consensus       125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~  186 (311)
T PF02384_consen  125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG  186 (311)
T ss_dssp             -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred             ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence            89999986322211  0               00111 236788999999999976654443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.18  E-value=0.16  Score=50.56  Aligned_cols=65  Identities=17%  Similarity=0.045  Sum_probs=45.9

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.+++.|+++    |+. +.+...++...+.+.++||+|+++....+       ....+.++|||||.+++...
T Consensus       112 Dis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        112 EYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             ECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEeC
Confidence            7888888888763    554 34445556666666688999998744322       33457789999999988654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=93.14  E-value=0.15  Score=50.12  Aligned_cols=73  Identities=19%  Similarity=0.176  Sum_probs=47.4

Q ss_pred             cCCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcc-------------ccccc------CC---
Q 017983            5 PKDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCR-------------VHWDA------QG---   56 (363)
Q Consensus         5 p~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~-------------~~~~~------~~---   56 (363)
                      --|+|+.+++.|++.    |+.  +.+...+... ++++++||+|+|.--.             .|.+.      ++   
T Consensus       162 avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~  240 (307)
T PRK11805        162 AVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLD  240 (307)
T ss_pred             EEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHH
Confidence            358899999988766    543  4455555422 3456789999995210             01110      00   


Q ss_pred             --CchhhhhcccccCCeEEEEEeC
Q 017983           57 --GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        57 --~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                        ..++.++.++|+|||++++...
T Consensus       241 ~~~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        241 LVRRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEC
Confidence              2467889999999999999755

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=93.10  E-value=0.3  Score=49.80  Aligned_cols=17  Identities=41%  Similarity=0.810  Sum_probs=15.0

Q ss_pred             CC-CCcceeeeccccccc
Q 017983          279 YP-RTYDLLHSSFLLSDV  295 (363)
Q Consensus       279 fp-~sFDlVh~~~~l~~~  295 (363)
                      || +|.+++|++.++|-+
T Consensus       158 fP~~Slh~~~Ss~slHWL  175 (386)
T PLN02668        158 FPARSIDVFHSAFSLHWL  175 (386)
T ss_pred             cCCCceEEEEeeccceec
Confidence            89 999999999999743

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.10  E-value=0.32  Score=50.72  Aligned_cols=98  Identities=13%  Similarity=0.244  Sum_probs=66.0

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eeeeccccccCCCCC-CCcceeeeccccccc
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNTYP-RTYDLLHSSFLLSDV  295 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~  295 (363)
                      ++|=+|||.=.+.-.|-+.+..  +|.-+|.| -.+..+..++.     ..+..... ..+.|+ .|||+|+.-..+.++
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~-~~l~fedESFdiVIdkGtlDal  127 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM-DQLVFEDESFDIVIDKGTLDAL  127 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecc-hhccCCCcceeEEEecCccccc
Confidence            8999999999888888775532  34455666 34444444442     22222212 358899 999999998888765


Q ss_pred             cccC-------CHHHHHHHHhHhccCCeEEEEEcC
Q 017983          296 TQRC-------DIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       296 ~~~~-------~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      -...       .....+.|+.|||+|||+++.-..
T Consensus       128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            4221       235678999999999999776544

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.09  E-value=0.2  Score=52.18  Aligned_cols=71  Identities=21%  Similarity=0.294  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHHcC---CC-ceeeecccCCCCCCCCCccEEEeCCcccccccC---------CCchhhhhcccccCCeE
Q 017983            6 KDEHEAQIQFALERG---IP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ---------GGKPLLELNRILRPGGF   72 (363)
Q Consensus         6 ~D~~~~qvq~A~erg---~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~---------~~~~l~E~~RVLrPGG~   72 (363)
                      -|.|..-|..++.++   .+ .....++...|.|+|+|||+|+---.+.+.-.+         ....+.|+.|||+|||.
T Consensus        77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk  156 (482)
T KOG2352|consen   77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK  156 (482)
T ss_pred             ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE
Confidence            467777787777775   22 344566789999999999999863333332222         22467899999999999


Q ss_pred             EEEE
Q 017983           73 FIWS   76 (363)
Q Consensus        73 ~~~s   76 (363)
                      ++..
T Consensus       157 ~~sv  160 (482)
T KOG2352|consen  157 YISV  160 (482)
T ss_pred             EEEE
Confidence            7664

>PRK01581 speE spermidine synthase; Validated

Probab=92.94  E-value=0.45  Score=48.30  Aligned_cols=71  Identities=17%  Similarity=0.184  Sum_probs=46.9

Q ss_pred             CCCHHHHHHHHHc--------C----CCceeeecccCC-CCCCCCCccEEEeCCccccccc-----CCCchhhhhccccc
Q 017983            7 DEHEAQIQFALER--------G----IPAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDA-----QGGKPLLELNRILR   68 (363)
Q Consensus         7 D~~~~qvq~A~er--------g----~p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~-----~~~~~l~E~~RVLr   68 (363)
                      |+++.+++.|++.        +    -.+.+...|+.. |+-.++.||+|++... -+...     ....++..+.|.|+
T Consensus       181 EIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~Lk  259 (374)
T PRK01581        181 DLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLT  259 (374)
T ss_pred             eCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcC
Confidence            7899999999962        1    124444555433 5556788999998631 11110     01248899999999


Q ss_pred             CCeEEEEEeC
Q 017983           69 PGGFFIWSAT   78 (363)
Q Consensus        69 PGG~~~~s~~   78 (363)
                      |||.|+....
T Consensus       260 PgGV~V~Qs~  269 (374)
T PRK01581        260 EDGAFVCQSN  269 (374)
T ss_pred             CCcEEEEecC
Confidence            9999988643

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.90  E-value=1.1  Score=41.49  Aligned_cols=118  Identities=14%  Similarity=0.125  Sum_probs=64.8

Q ss_pred             CceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-----chHHHHHhcCc-eeee-ccccccCCCCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-----DTLSIIFDRGL-IGMY-HDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-----~~L~~a~~Rgl-~~~~-~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      ...+|++|||+|.....|+..   ++.   ...+|..     .+++-|...+. +.++ .|..   .... ++.|+++-+
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~---~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~---~~l~~~~VDvLvfN  117 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQAL---YLATDINPEALEATLETARCNRVHIDVVRTDLL---SGLRNESVDVLVFN  117 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCce---EEEecCCHHHHHHHHHHHHhcCCccceeehhHH---hhhccCCccEEEEC
Confidence            568999999999888888764   222   2344544     24454544432 2222 2211   1112 555555433


Q ss_pred             c--------------cccccc----ccCCHHHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCceeeee
Q 017983          290 F--------------LLSDVT----QRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       290 ~--------------~l~~~~----~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~  344 (363)
                      -              .-..|.    -+.-+..+|..+.-+|-|-|.+++--... -..+|-++.+.-.|.+++.
T Consensus       118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~  191 (209)
T KOG3191|consen  118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA  191 (209)
T ss_pred             CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence            1              111121    11114677888889999999998864332 2344555666777765554

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=92.90  E-value=0.044  Score=49.52  Aligned_cols=43  Identities=14%  Similarity=0.373  Sum_probs=32.6

Q ss_pred             CCccEEEeCCcccccc-------cC---CCchhhhhcccccCCeEEEEEeCCC
Q 017983           38 DAYDLIHCARCRVHWD-------AQ---GGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus        38 ~sFD~v~cs~~~~~~~-------~~---~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      ++||.+.|..+..|.-       -|   +-+.++++.|||||||.|++++|..
T Consensus        62 ~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG  114 (177)
T PF03269_consen   62 GSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG  114 (177)
T ss_pred             ccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence            6899998866665541       01   1258899999999999999999953

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=92.70  E-value=0.33  Score=43.98  Aligned_cols=89  Identities=19%  Similarity=0.269  Sum_probs=57.3

Q ss_pred             cCCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCC----------Cchhhhhccccc
Q 017983            5 PKDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG----------GKPLLELNRILR   68 (363)
Q Consensus         5 p~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~----------~~~l~E~~RVLr   68 (363)
                      -.|+++.+|+.|++.    |+.  +.+.+.++..||+++++||.|+|..   ||-..-          ..++.|+.|||+
T Consensus        66 g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~  142 (179)
T PF01170_consen   66 GSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLK  142 (179)
T ss_dssp             EEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHST
T ss_pred             ecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCC
Confidence            468888999888755    554  5666778999999999999999942   332110          146899999999


Q ss_pred             CCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           69 PGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        69 PGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      |...++++..             ..++.+....-|+....+
T Consensus       143 ~~~v~l~~~~-------------~~~~~~~~~~~~~~~~~~  170 (179)
T PF01170_consen  143 PRAVFLTTSN-------------RELEKALGLKGWRKRKLY  170 (179)
T ss_dssp             TCEEEEEESC-------------CCHHHHHTSTTSEEEEEE
T ss_pred             CCEEEEEECC-------------HHHHHHhcchhhceEEEE
Confidence            9555555543             123444555566666544

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=92.57  E-value=0.12  Score=50.11  Aligned_cols=43  Identities=23%  Similarity=0.485  Sum_probs=36.9

Q ss_pred             CCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983           36 PDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        36 pd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      ..+-||+|+|.-+++.+... ..+++..++..|+|||+|++...
T Consensus       199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s  242 (268)
T COG1352         199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS  242 (268)
T ss_pred             ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence            55789999999999988753 35799999999999999999755

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=92.45  E-value=0.93  Score=45.48  Aligned_cols=107  Identities=16%  Similarity=0.257  Sum_probs=54.5

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHH----hcCc--eeeeccccccCCC---------------CC
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF----DRGL--IGMYHDWCESFNT---------------YP  280 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~----~Rgl--~~~~~d~~e~~lp---------------fp  280 (363)
                      +|||+-||+|+|+..|++....|   .+++.. ++++.|.    ..|+  +..+...++....               ..
T Consensus       199 ~vlDlycG~G~fsl~la~~~~~V---~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~  275 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKAKKV---IGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK  275 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCSSEE---EEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred             cEEEEeecCCHHHHHHHhhCCeE---EEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence            79999999999999999876554   444544 4554443    3343  2222211221111               11


Q ss_pred             -CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCceee
Q 017983          281 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       281 -~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~~~  342 (363)
                       ..+|+|+..      |.+.++...+.+.  +.++.-.++||= .......++.|.+  .|++.
T Consensus       276 ~~~~d~vilD------PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~  329 (352)
T PF05958_consen  276 SFKFDAVILD------PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLE  329 (352)
T ss_dssp             CTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEE
T ss_pred             hcCCCEEEEc------CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEE
Confidence             257777654      3344443333333  235666788874 4445556666654  46543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=92.42  E-value=0.16  Score=49.16  Aligned_cols=65  Identities=18%  Similarity=0.275  Sum_probs=46.7

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      +.|..|...=.+||..    +.+.....-.+..||+|.|-=.+ .=.+++...|.+|++.|+|+|.++++
T Consensus       123 E~S~~Mr~rL~~kg~~----vl~~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  123 EASPPMRWRLSKKGFT----VLDIDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             cCCHHHHHHHHhCCCe----EEehhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence            5677787777788974    33333333345689999994322 33445678999999999999999998

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=92.37  E-value=0.37  Score=44.69  Aligned_cols=73  Identities=19%  Similarity=0.254  Sum_probs=51.2

Q ss_pred             CCCCHHHHHHHH----HcCCC--ceeeecccCCCCCCCCCccEEEe-----CCccccc--ccCCCchhhhhcccccCCeE
Q 017983            6 KDEHEAQIQFAL----ERGIP--AILSVIGTQKLTFPDDAYDLIHC-----ARCRVHW--DAQGGKPLLELNRILRPGGF   72 (363)
Q Consensus         6 ~D~~~~qvq~A~----erg~p--~~~~~~~~~~LPfpd~sFD~v~c-----s~~~~~~--~~~~~~~l~E~~RVLrPGG~   72 (363)
                      -|-|+..|..|.    .+|.+  +.+.+++...-.|-.+.||+|+=     +..+.+-  ......++.-+.+.|+|||.
T Consensus        97 vDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gi  176 (227)
T KOG1271|consen   97 VDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGI  176 (227)
T ss_pred             cccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcE
Confidence            466777777664    34888  77788886666888899999974     2222221  11123577888999999999


Q ss_pred             EEEEeC
Q 017983           73 FIWSAT   78 (363)
Q Consensus        73 ~~~s~~   78 (363)
                      |++++=
T Consensus       177 fvItSC  182 (227)
T KOG1271|consen  177 FVITSC  182 (227)
T ss_pred             EEEEec
Confidence            999865

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.27  E-value=0.51  Score=48.87  Aligned_cols=108  Identities=17%  Similarity=0.179  Sum_probs=62.8

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-c-hHHHHHhcCce--eeeccccccCCCC--C-CCcceeeecccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-D-TLSIIFDRGLI--GMYHDWCESFNTY--P-RTYDLLHSSFLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~-~L~~a~~Rgl~--~~~~d~~e~~lpf--p-~sFDlVh~~~~l  292 (363)
                      +..+|||+=||.|+|+..|+++...|..+..+..+ + .-..|..-|+.  ......++.+.+=  . ..||.|+..   
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD---  369 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD---  369 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC---
Confidence            34699999999999999999765444444333322 2 22233333432  2222223433332  2 578998875   


Q ss_pred             ccccccCCHH-HHHHHHhHhccCCeEEEEEcCHHHH-HHHHHHH
Q 017983          293 SDVTQRCDIA-DVAVEMDRILRPGGYVLVQDTLEMI-NKLKPVL  334 (363)
Q Consensus       293 ~~~~~~~~~~-~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~l~  334 (363)
                         +.+.++. .+++++.+ ++|-..++||=....+ ..++.|.
T Consensus       370 ---PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~  409 (432)
T COG2265         370 ---PPRAGADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILA  409 (432)
T ss_pred             ---CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHH
Confidence               3455555 55666555 5788899998655543 4444444

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=92.26  E-value=0.091  Score=50.69  Aligned_cols=48  Identities=21%  Similarity=0.350  Sum_probs=36.7

Q ss_pred             cCCCCCCC-----CCccEEEeCCcccccccCC---CchhhhhcccccCCeEEEEEe
Q 017983           30 TQKLTFPD-----DAYDLIHCARCRVHWDAQG---GKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus        30 ~~~LPfpd-----~sFD~v~cs~~~~~~~~~~---~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      ++.-|++.     ..||+|+++.|+.--..+.   ..+++-+.+.|||||.|++.+
T Consensus       144 ~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  144 TQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             TSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            34445544     3599999999998776553   468899999999999999973

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK03612 spermidine synthase; Provisional

Probab=92.11  E-value=0.32  Score=51.32  Aligned_cols=71  Identities=18%  Similarity=0.107  Sum_probs=47.3

Q ss_pred             CCCHHHHHHHHHcC-----------CC-ceeeecccCC-CCCCCCCccEEEeCCcccccccCC-----Cchhhhhccccc
Q 017983            7 DEHEAQIQFALERG-----------IP-AILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQG-----GKPLLELNRILR   68 (363)
Q Consensus         7 D~~~~qvq~A~erg-----------~p-~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~-----~~~l~E~~RVLr   68 (363)
                      |+++..++.|++.-           -| +.+...|+.. +...+++||+|++... .++....     ..+++++.|.||
T Consensus       328 Eid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~  406 (521)
T PRK03612        328 DLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP-DPSNPALGKLYSVEFYRLLKRRLA  406 (521)
T ss_pred             ECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC-CCCCcchhccchHHHHHHHHHhcC
Confidence            77899999998831           12 3445556543 4444579999998632 2321111     147889999999


Q ss_pred             CCeEEEEEeC
Q 017983           69 PGGFFIWSAT   78 (363)
Q Consensus        69 PGG~~~~s~~   78 (363)
                      |||.+++...
T Consensus       407 pgG~lv~~~~  416 (521)
T PRK03612        407 PDGLLVVQST  416 (521)
T ss_pred             CCeEEEEecC
Confidence            9999998754

>PRK04457 spermidine synthase; Provisional

Probab=91.90  E-value=0.57  Score=45.03  Aligned_cols=70  Identities=11%  Similarity=0.073  Sum_probs=45.1

Q ss_pred             CCCHHHHHHHHHc-CCC-----ceeeecccCC-CCCCCCCccEEEeCCc-cccccc--CCCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFALER-GIP-----AILSVIGTQK-LTFPDDAYDLIHCARC-RVHWDA--QGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A~er-g~p-----~~~~~~~~~~-LPfpd~sFD~v~cs~~-~~~~~~--~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      |+++..++.|++. +.+     +.+...|+.. ++-..++||+|++... ....+.  .-..++.++.++|+|||.|++-
T Consensus        97 Eidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457         97 EINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             ECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            6788999999886 332     3444455322 3323368999997421 111111  1147899999999999999985

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=91.88  E-value=0.53  Score=43.43  Aligned_cols=99  Identities=15%  Similarity=0.209  Sum_probs=59.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----C---ceeeeccccccCCCCC---CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G---LIGMYHDWCESFNTYP---RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----g---l~~~~~d~~e~~lpfp---~sFDlVh~~  289 (363)
                      ..++||+=+|+|.++.+-+.+++.-  ++-++.+ ....++.+-    +   -..++...+...|+-.   +.||+|+..
T Consensus        44 g~~~LDlFAGSGaLGlEAlSRGA~~--~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD  121 (187)
T COG0742          44 GARVLDLFAGSGALGLEALSRGAAR--VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD  121 (187)
T ss_pred             CCEEEEecCCccHhHHHHHhCCCce--EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence            3599999999999999999988653  3444444 333332222    2   2334443333344444   349999987


Q ss_pred             cccccccccCCH--HHHH--HHHhHhccCCeEEEEEcCHH
Q 017983          290 FLLSDVTQRCDI--ADVA--VEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       290 ~~l~~~~~~~~~--~~~L--~Em~RVLRPGG~lii~D~~~  325 (363)
                         ..+. .+..  +..+  .+-...|+|||.+++-...+
T Consensus       122 ---PPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         122 ---PPYA-KGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             ---CCCc-cchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence               3332 1122  2223  33668899999999875544

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=91.56  E-value=0.069  Score=45.19  Aligned_cols=59  Identities=14%  Similarity=0.312  Sum_probs=35.8

Q ss_pred             cceeeeccccc--cccc-cCCHHHHHHHHhHhccCCeEEEEEcCH--------HHHHHHHHHHHhCCcee
Q 017983          283 YDLLHSSFLLS--DVTQ-RCDIADVAVEMDRILRPGGYVLVQDTL--------EMINKLKPVLHSLQWST  341 (363)
Q Consensus       283 FDlVh~~~~l~--~~~~-~~~~~~~L~Em~RVLRPGG~lii~D~~--------~~~~~i~~l~~~l~W~~  341 (363)
                      ||+|.|-.+--  |+.. .+++..++.-|.+.|||||.+++--..        .....+.+-.+++++..
T Consensus         2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP   71 (110)
T PF06859_consen    2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRP   71 (110)
T ss_dssp             EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----G
T ss_pred             ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEECh
Confidence            89999866543  5542 245788999999999999999996431        12344555556666543

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=91.32  E-value=0.69  Score=44.62  Aligned_cols=100  Identities=21%  Similarity=0.229  Sum_probs=63.4

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc--chHHHHHhcC-ceeeeccccccCCCCC-----C
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP--DTLSIIFDRG-LIGMYHDWCESFNTYP-----R  281 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s--~~L~~a~~Rg-l~~~~~d~~e~~lpfp-----~  281 (363)
                      ++.|++++  +||=+|++.|.......+-   ...|-.|.=+.-+  +.+..|.+|- ++.++.|   ++.|+.     .
T Consensus       151 nihikpGs--KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiED---ArhP~KYRmlVg  225 (317)
T KOG1596|consen  151 NIHIKPGS--KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIED---ARHPAKYRMLVG  225 (317)
T ss_pred             ceeecCCc--eEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeecc---CCCchheeeeee
Confidence            45567665  9999999999877666652   1122122222223  4667788884 4677776   356644     3


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      -.|+|++     .+..++...-+.+-..-.||+||.|+|+-
T Consensus       226 mVDvIFa-----Dvaqpdq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  226 MVDVIFA-----DVAQPDQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             eEEEEec-----cCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence            4455554     44444444456778888999999999983

>PRK07402 precorrin-6B methylase; Provisional

Probab=91.12  E-value=0.33  Score=43.99  Aligned_cols=67  Identities=16%  Similarity=0.183  Sum_probs=43.6

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCC-CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.+++.|.++    |+. +.+...++.. ++.-...+|.++...     ..+...++.++.|+|+|||+|++..+
T Consensus        71 D~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402         71 ERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             eCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence            7888888888763    554 3444444432 333334467765421     11224789999999999999999976

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=90.98  E-value=0.24  Score=42.88  Aligned_cols=43  Identities=21%  Similarity=0.239  Sum_probs=29.1

Q ss_pred             CCCceEEEecccccHHHHHhhc-----CCCeEEEEeecCCc-chHHHHHhc
Q 017983          219 SSVRNVMDMNASYGGFAAALID-----QPLWVMNVVPIDAP-DTLSIIFDR  263 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~-----~~v~v~~v~~~d~s-~~L~~a~~R  263 (363)
                      .+...|+|+|||-|.++..|+.     .  ....|.++|.. ..++.+..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~   72 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR   72 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence            4567999999999999998887     3  22345566655 444444443

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=90.85  E-value=0.27  Score=45.91  Aligned_cols=45  Identities=20%  Similarity=0.265  Sum_probs=38.3

Q ss_pred             CCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCC--eEEEEEeCC
Q 017983           33 LTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPG--GFFIWSATP   79 (363)
Q Consensus        33 LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPG--G~~~~s~~~   79 (363)
                      =|+|.  +|+++.+.++|+|+++. ...|+.+.+.|+||  |++++....
T Consensus       154 ~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  154 DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence            57786  99999999999998753 57899999999999  999998653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=90.84  E-value=0.23  Score=47.78  Aligned_cols=61  Identities=18%  Similarity=0.432  Sum_probs=40.6

Q ss_pred             CCCCCCCccEEEeCC----cccccccCC-CchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHH
Q 017983           33 LTFPDDAYDLIHCAR----CRVHWDAQG-GKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNL   97 (363)
Q Consensus        33 LPfpd~sFD~v~cs~----~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l   97 (363)
                      |-+-...||+|.|--    +-..|.+++ ..++.-+.|.|.|||+|++...    +|.-....-+.++.+
T Consensus       160 l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ----pWksY~kaar~~e~~  225 (288)
T KOG2899|consen  160 LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ----PWKSYKKAARRSEKL  225 (288)
T ss_pred             hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC----chHHHHHHHHHHHHh
Confidence            445677899999932    223455543 4689999999999999999744    455544443444443

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=90.52  E-value=0.56  Score=46.15  Aligned_cols=89  Identities=16%  Similarity=0.191  Sum_probs=54.5

Q ss_pred             CCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCC
Q 017983            7 DEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYR   82 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~   82 (363)
                      |+.+..++.|++.    |+...+.+..  ...++...||+|++..-...    ....+..+.++|+|||+|++|+=... 
T Consensus       191 DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~~v----L~~l~~~~~~~l~~~G~lIlSGIl~~-  263 (295)
T PF06325_consen  191 DIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILADV----LLELAPDIASLLKPGGYLILSGILEE-  263 (295)
T ss_dssp             ESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-HHH----HHHHHHHCHHHEEEEEEEEEEEEEGG-
T ss_pred             cCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCHHH----HHHHHHHHHHhhCCCCEEEEccccHH-
Confidence            5666666666654    7766554432  23455699999999754322    12467788999999999999976321 


Q ss_pred             CChhhHHHHHHHHHHHhhcceEEEEEec
Q 017983           83 HDDRHRSVWNAMVNLTESMCWKAVARSV  110 (363)
Q Consensus        83 ~~~e~~~~~~~~~~l~~~~cw~~~~~~~  110 (363)
                             ....+.+..+. .+++.....
T Consensus       264 -------~~~~v~~a~~~-g~~~~~~~~  283 (295)
T PF06325_consen  264 -------QEDEVIEAYKQ-GFELVEERE  283 (295)
T ss_dssp             -------GHHHHHHHHHT-TEEEEEEEE
T ss_pred             -------HHHHHHHHHHC-CCEEEEEEE
Confidence                   12334444455 888776554

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=90.45  E-value=0.34  Score=47.14  Aligned_cols=116  Identities=21%  Similarity=0.263  Sum_probs=63.6

Q ss_pred             CCCCCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHH---HHHhc-Cc--eeee-ccccccCCC-CC-CCc
Q 017983          217 NWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLS---IIFDR-GL--IGMY-HDWCESFNT-YP-RTY  283 (363)
Q Consensus       217 ~~~~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~---~a~~R-gl--~~~~-~d~~e~~lp-fp-~sF  283 (363)
                      .+.+..+|||++||.|+-+..|++.   ...   +++.|.+ +-+.   ...+| |.  +.+. +|. ....+ ++ ..|
T Consensus        82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~---i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~-~~~~~~~~~~~f  157 (283)
T PF01189_consen   82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGE---IVANDISPKRLKRLKENLKRLGVFNVIVINADA-RKLDPKKPESKF  157 (283)
T ss_dssp             TTTTTSEEEESSCTTSHHHHHHHHHTTTTSE---EEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH-HHHHHHHHTTTE
T ss_pred             cccccccccccccCCCCceeeeeecccchhH---HHHhccCHHHHHHHHHHHHhcCCceEEEEeecc-cccccccccccc
Confidence            3344568999999999866666542   223   5666766 3332   22223 43  2233 332 21122 23 459


Q ss_pred             ceeee----cc--cccccc------ccCCH-------HHHHHHHhHhc----cCCeEEEEEcC----HHHHHHHHHHHHh
Q 017983          284 DLLHS----SF--LLSDVT------QRCDI-------ADVAVEMDRIL----RPGGYVLVQDT----LEMINKLKPVLHS  336 (363)
Q Consensus       284 DlVh~----~~--~l~~~~------~~~~~-------~~~L~Em~RVL----RPGG~lii~D~----~~~~~~i~~l~~~  336 (363)
                      |.|..    +.  ++..-+      ...++       .++|....+.|    ||||+++.+.=    .+.-..|+.++++
T Consensus       158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~  237 (283)
T PF01189_consen  158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKR  237 (283)
T ss_dssp             EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHH
T ss_pred             chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence            99985    22  222111      01111       46788899999    99999999842    2233455555544

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=90.38  E-value=0.68  Score=50.68  Aligned_cols=79  Identities=11%  Similarity=0.033  Sum_probs=41.4

Q ss_pred             EEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCCCC-CCcceeeeccccc-cccccCCHHHHHHH---HhHhc
Q 017983          247 NVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTYP-RTYDLLHSSFLLS-DVTQRCDIADVAVE---MDRIL  312 (363)
Q Consensus       247 ~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lpfp-~sFDlVh~~~~l~-~~~~~~~~~~~L~E---m~RVL  312 (363)
                      .++++|.. .++..|.+.    |+   +.+. .|+.+...+++ ++||+|+++==+- .+....++..+-.+   +.|.+
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~  337 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ  337 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence            47888887 777665444    44   2232 33322222344 6899999981110 11111223334344   44444


Q ss_pred             cCCeEEEEEcCHH
Q 017983          313 RPGGYVLVQDTLE  325 (363)
Q Consensus       313 RPGG~lii~D~~~  325 (363)
                      .||+.+++.....
T Consensus       338 ~~g~~~~llt~~~  350 (702)
T PRK11783        338 FGGWNAALFSSSP  350 (702)
T ss_pred             CCCCeEEEEeCCH
Confidence            4999887766544

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=90.22  E-value=0.84  Score=43.40  Aligned_cols=96  Identities=21%  Similarity=0.359  Sum_probs=63.2

Q ss_pred             CCCceEEEecccccHHHHHhhcCCC---eEEEEeecCCc-chHHHHHhcCc------eeeeccccccCCCCC-CCcceee
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPL---WVMNVVPIDAP-DTLSIIFDRGL------IGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v---~v~~v~~~d~s-~~L~~a~~Rgl------~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      .+.++||.||=|.|...-.+.+++.   |++     ..+ .-++..++-|.      +-....|-...-..| +.||-|.
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~Ii-----E~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~  174 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWII-----EAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY  174 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEE-----ecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence            3457999999999988888877643   332     222 45555555553      333445532223477 8999998


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      -.-.-.|+   +++..+-+-+.|.|||||.+-...
T Consensus       175 yDTy~e~y---Edl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  175 YDTYSELY---EDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             eechhhHH---HHHHHHHHHHhhhcCCCceEEEec
Confidence            65332444   346678889999999999987763

>TIGR00417 speE spermidine synthase

Probab=90.15  E-value=0.63  Score=44.72  Aligned_cols=71  Identities=17%  Similarity=0.143  Sum_probs=44.2

Q ss_pred             CCCHHHHHHHHHcC---------CCceeeecccCC-CCCCCCCccEEEeCCcccccccC----CCchhhhhcccccCCeE
Q 017983            7 DEHEAQIQFALERG---------IPAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQ----GGKPLLELNRILRPGGF   72 (363)
Q Consensus         7 D~~~~qvq~A~erg---------~p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~----~~~~l~E~~RVLrPGG~   72 (363)
                      |+++..++.|++.-         -.+.+...++.. +.-..+.||+|++.... +....    ...++..+.+.|+|||.
T Consensus       103 eid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~  181 (270)
T TIGR00417       103 DIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTD-PVGPAETLFTKEFYELLKKALNEDGI  181 (270)
T ss_pred             eCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCC-CCCcccchhHHHHHHHHHHHhCCCcE
Confidence            67788888887741         112333334322 33335799999985431 22211    12577899999999999


Q ss_pred             EEEEeC
Q 017983           73 FIWSAT   78 (363)
Q Consensus        73 ~~~s~~   78 (363)
                      +++...
T Consensus       182 lv~~~~  187 (270)
T TIGR00417       182 FVAQSE  187 (270)
T ss_pred             EEEcCC
Confidence            999744

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=89.87  E-value=0.49  Score=45.53  Aligned_cols=89  Identities=15%  Similarity=0.259  Sum_probs=55.3

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCC--CCCCCCccEEEeCCccccccc--------------------CCCc
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKL--TFPDDAYDLIHCARCRVHWDA--------------------QGGK   58 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~L--Pfpd~sFD~v~cs~~~~~~~~--------------------~~~~   58 (363)
                      ++.+...++|++.    +..  +.+...|...+  +++-.+||+|+|.-   |+.+                    +...
T Consensus        75 Eiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP---Pyf~~~~~~~~~~~~~~Ar~e~~~~le~  151 (248)
T COG4123          75 EIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP---PYFKQGSRLNENPLRAIARHEITLDLED  151 (248)
T ss_pred             EeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC---CCCCCccccCcChhhhhhhhhhcCCHHH
Confidence            4567777777654    222  44555564443  34445899999942   1111                    1123


Q ss_pred             hhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983           59 PLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVA  107 (363)
Q Consensus        59 ~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~  107 (363)
                      .++=+.++|||||+|++.-|+         +....+-++++++.|..-.
T Consensus       152 ~i~~a~~~lk~~G~l~~V~r~---------erl~ei~~~l~~~~~~~k~  191 (248)
T COG4123         152 LIRAAAKLLKPGGRLAFVHRP---------ERLAEIIELLKSYNLEPKR  191 (248)
T ss_pred             HHHHHHHHccCCCEEEEEecH---------HHHHHHHHHHHhcCCCceE
Confidence            556667899999999999884         3355667777777775543

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=89.23  E-value=0.9  Score=47.34  Aligned_cols=100  Identities=20%  Similarity=0.251  Sum_probs=63.8

Q ss_pred             CCceEEEeccccc--HHHHHhhcCCCeEEEEeecCCc-chHHHHHh--cC-c-e------e-eeccccccCCCCC--CCc
Q 017983          220 SVRNVMDMNASYG--GFAAALIDQPLWVMNVVPIDAP-DTLSIIFD--RG-L-I------G-MYHDWCESFNTYP--RTY  283 (363)
Q Consensus       220 ~~r~VLDvGCG~G--~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~--Rg-l-~------~-~~~d~~e~~lpfp--~sF  283 (363)
                      ..+.++|+|-|.|  +.++.+.-+. +.-.++-+|.+ .|+..+..  |+ - +      . ++++   .++|-+  +-|
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~y  275 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGY  275 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccce
Confidence            3467888887766  4555554432 12234444555 55543321  12 0 1      1 3343   578887  669


Q ss_pred             ceeeeccccccccccCCHHHHHHHHhH-hccCCeEEEEEcC
Q 017983          284 DLLHSSFLLSDVTQRCDIADVAVEMDR-ILRPGGYVLVQDT  323 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~~~~~L~Em~R-VLRPGG~lii~D~  323 (363)
                      |+|+|++.++++.+...-.++..+..| ..||||+++|.+.
T Consensus       276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~  316 (491)
T KOG2539|consen  276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK  316 (491)
T ss_pred             eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence            999999999999877666667777655 6899999999865

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=89.03  E-value=1.8  Score=44.65  Aligned_cols=102  Identities=20%  Similarity=0.266  Sum_probs=59.1

Q ss_pred             ccCCCCCceEEEecccccH---HHHHhhc-CCCeEEEEeecCCc-chHH----HHHhcCc---eeeeccccccCCC---C
Q 017983          215 AINWSSVRNVMDMNASYGG---FAAALID-QPLWVMNVVPIDAP-DTLS----IIFDRGL---IGMYHDWCESFNT---Y  279 (363)
Q Consensus       215 ~i~~~~~r~VLDvGCG~G~---faa~L~~-~~v~v~~v~~~d~s-~~L~----~a~~Rgl---~~~~~d~~e~~lp---f  279 (363)
                      ++.+-...+||||.|-.|+   +.|+|.+ .|+    |.+.|.. +-+.    .+..-|.   +.+.+|.-  ..|   |
T Consensus       236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~--ef~~~~~  309 (460)
T KOG1122|consen  236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGR--EFPEKEF  309 (460)
T ss_pred             ecCCCCCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccCcc--ccccccc
Confidence            3556667899999999996   5555544 443    4566654 3332    2333354   33344421  233   5


Q ss_pred             CCCcceee----ecc--ccccccccCC-------------HHHHHHHHhHhccCCeEEEEEc
Q 017983          280 PRTYDLLH----SSF--LLSDVTQRCD-------------IADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       280 p~sFDlVh----~~~--~l~~~~~~~~-------------~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +.+||-|.    |+.  +++--+..+.             -.++|.--...+||||+++.+.
T Consensus       310 ~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  310 PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            57999997    555  3331100000             0346666677899999999985

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=88.73  E-value=0.41  Score=40.58  Aligned_cols=30  Identities=20%  Similarity=0.298  Sum_probs=21.2

Q ss_pred             eEEEecccccHHHHHhhcCCC--eEEEEeecC
Q 017983          223 NVMDMNASYGGFAAALIDQPL--WVMNVVPID  252 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v--~v~~v~~~d  252 (363)
                      +|||+|||.|.++..++..+.  .+..+.|..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~   32 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP   32 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence            589999999999998887542  344444443

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=88.66  E-value=0.14  Score=41.52  Aligned_cols=94  Identities=18%  Similarity=0.196  Sum_probs=32.5

Q ss_pred             EEecccccHHHHHhhcC----C-CeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCC-CCC-CCcceeeeccccc
Q 017983          225 MDMNASYGGFAAALIDQ----P-LWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFN-TYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       225 LDvGCG~G~faa~L~~~----~-v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~l-pfp-~sFDlVh~~~~l~  293 (363)
                      |.+|+..|..+..|++.    + ..+..+.+.... ...+.+.+.++   +..+.......+ .++ +.||+++...  .
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D   78 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence            57898899877776642    1 123334333311 12223333333   223322221112 255 8999999874  2


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |  ........+..+.+.|+|||.+++-|
T Consensus        79 H--~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 H--SYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             C--CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            2  11234567888999999999988765

>PRK11524 putative methyltransferase; Provisional

Probab=88.63  E-value=0.38  Score=46.64  Aligned_cols=54  Identities=17%  Similarity=0.162  Sum_probs=34.8

Q ss_pred             eeecccCCC--CCCCCCccEEEeCC--cc--------ccccc-----CCCchhhhhcccccCCeEEEEEeC
Q 017983           25 LSVIGTQKL--TFPDDAYDLIHCAR--CR--------VHWDA-----QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        25 ~~~~~~~~L--Pfpd~sFD~v~cs~--~~--------~~~~~-----~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      +...|+..+  .+++++||+|+++-  ..        ..|..     -....|.|+.|||||||.+++...
T Consensus        11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~   81 (284)
T PRK11524         11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS   81 (284)
T ss_pred             EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            444554332  57899999999942  10        00100     002488999999999999998744

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=88.54  E-value=0.42  Score=44.89  Aligned_cols=68  Identities=22%  Similarity=0.269  Sum_probs=44.3

Q ss_pred             CCCHHHHHHHH-HcCCC----------------ceeeecccCCCCCCC-CCccEEE--eCCcccccccCCCchhhhhccc
Q 017983            7 DEHEAQIQFAL-ERGIP----------------AILSVIGTQKLTFPD-DAYDLIH--CARCRVHWDAQGGKPLLELNRI   66 (363)
Q Consensus         7 D~~~~qvq~A~-erg~p----------------~~~~~~~~~~LPfpd-~sFD~v~--cs~~~~~~~~~~~~~l~E~~RV   66 (363)
                      |+|+..|+.|. |++..                +.+.+.|.-.|+-.+ +.||+|.  .++|++|-. .......-+.++
T Consensus        66 Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~-~R~~Ya~~l~~l  144 (218)
T PF05724_consen   66 DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPE-MRERYAQQLASL  144 (218)
T ss_dssp             ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GG-GHHHHHHHHHHC
T ss_pred             ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHH-HHHHHHHHHHHH
Confidence            78899999984 44531                133444555555433 4799998  466777633 346799999999


Q ss_pred             ccCCeEEEE
Q 017983           67 LRPGGFFIW   75 (363)
Q Consensus        67 LrPGG~~~~   75 (363)
                      |||||.+++
T Consensus       145 l~p~g~~lL  153 (218)
T PF05724_consen  145 LKPGGRGLL  153 (218)
T ss_dssp             EEEEEEEEE
T ss_pred             hCCCCcEEE
Confidence            999999433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PLN02366 spermidine synthase

Probab=88.38  E-value=1.1  Score=44.26  Aligned_cols=71  Identities=20%  Similarity=0.190  Sum_probs=44.5

Q ss_pred             CCCHHHHHHHHHcC------C---CceeeecccCC-C-CCCCCCccEEEeCCcccccccC----CCchhhhhcccccCCe
Q 017983            7 DEHEAQIQFALERG------I---PAILSVIGTQK-L-TFPDDAYDLIHCARCRVHWDAQ----GGKPLLELNRILRPGG   71 (363)
Q Consensus         7 D~~~~qvq~A~erg------~---p~~~~~~~~~~-L-Pfpd~sFD~v~cs~~~~~~~~~----~~~~l~E~~RVLrPGG   71 (363)
                      |+.+..++.|++.-      .   .+.+...|+.. + ..+++.||+|++-. ..++...    ...+++.+.|.|+|||
T Consensus       122 EiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgG  200 (308)
T PLN02366        122 EIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDS-SDPVGPAQELFEKPFFESVARALRPGG  200 (308)
T ss_pred             ECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCc
Confidence            56778888887751      1   13444455422 1 23467899999853 2233211    1247899999999999


Q ss_pred             EEEEEeC
Q 017983           72 FFIWSAT   78 (363)
Q Consensus        72 ~~~~s~~   78 (363)
                      .++.-..
T Consensus       201 vlv~q~~  207 (308)
T PLN02366        201 VVCTQAE  207 (308)
T ss_pred             EEEECcC
Confidence            9987433

>PHA03411 putative methyltransferase; Provisional

Probab=88.12  E-value=0.77  Score=44.91  Aligned_cols=75  Identities=11%  Similarity=0.109  Sum_probs=51.1

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccC-------------------CCchhhhhccc
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-------------------GGKPLLELNRI   66 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-------------------~~~~l~E~~RV   66 (363)
                      -|+++.+++.|+++--.+.+...++..++ .+++||+|++.-...|-...                   ...++..+.++
T Consensus        94 VDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~  172 (279)
T PHA03411         94 VELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYF  172 (279)
T ss_pred             EECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHhe
Confidence            38899999999887434566666766655 35789999996555442111                   02466788899


Q ss_pred             ccCCeEEEE--EeCCCC
Q 017983           67 LRPGGFFIW--SATPVY   81 (363)
Q Consensus        67 LrPGG~~~~--s~~~~~   81 (363)
                      |+|+|.+.+  |+.|.|
T Consensus       173 L~p~G~~~~~yss~~~y  189 (279)
T PHA03411        173 IVPTGSAGFAYSGRPYY  189 (279)
T ss_pred             ecCCceEEEEEeccccc
Confidence            999997655  455665

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=87.33  E-value=0.83  Score=42.58  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             Ccceeeeccc-cccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          282 TYDLLHSSFL-LSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       282 sFDlVh~~~~-l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      .-|+|+++.. |.     ..+...|.++..-||||-++|-+
T Consensus       122 ~AdvVf~Nn~~F~-----~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  122 DADVVFVNNTCFD-----PDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             C-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             CCCEEEEeccccC-----HHHHHHHHHHHhcCCCCCEEEEC
Confidence            4588988744 33     13456778888889988776543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=87.31  E-value=1.6  Score=40.88  Aligned_cols=96  Identities=25%  Similarity=0.201  Sum_probs=53.7

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHH-----HhcCc-eeeeccccccCCCCC-CCcceeeecccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSII-----FDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a-----~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..++|||+|+|.|--+.+-+..+..  .|+..|....+..+     ...|. +...|..    +-.. ..||++.++.+|
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d----~~g~~~~~Dl~LagDlf  152 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHAD----LIGSPPAFDLLLAGDLF  152 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeecc----ccCCCcceeEEEeecee
Confidence            4579999999999543333322211  12233332111111     11222 5556642    3336 999999999887


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      -   +...-..++.=.+|....|-.+++.|..
T Consensus       153 y---~~~~a~~l~~~~~~l~~~g~~vlvgdp~  181 (218)
T COG3897         153 Y---NHTEADRLIPWKDRLAEAGAAVLVGDPG  181 (218)
T ss_pred             c---CchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            5   2223345777556666667777777753

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=87.01  E-value=0.86  Score=47.70  Aligned_cols=77  Identities=16%  Similarity=0.367  Sum_probs=48.6

Q ss_pred             cCCCCHHHHHHHH---Hc-CCCc-eeeecccCCCC-CCCCCccEEE----eCCc---------ccccccC--------CC
Q 017983            5 PKDEHEAQIQFAL---ER-GIPA-ILSVIGTQKLT-FPDDAYDLIH----CARC---------RVHWDAQ--------GG   57 (363)
Q Consensus         5 p~D~~~~qvq~A~---er-g~p~-~~~~~~~~~LP-fpd~sFD~v~----cs~~---------~~~~~~~--------~~   57 (363)
                      -.|+|..-++...   +| |+.+ .+...++..++ ...+.||.|.    ||--         ...|+..        ..
T Consensus       143 A~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~  222 (470)
T PRK11933        143 ANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQR  222 (470)
T ss_pred             EEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHH
Confidence            3577766655554   33 8774 55566666652 3336799999    6521         1123211        12


Q ss_pred             chhhhhcccccCCeEEEEEeCCCC
Q 017983           58 KPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        58 ~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      ..|..+.+.|||||++++|+=.+.
T Consensus       223 ~iL~~A~~~LkpGG~LVYSTCT~~  246 (470)
T PRK11933        223 ELIESAFHALKPGGTLVYSTCTLN  246 (470)
T ss_pred             HHHHHHHHHcCCCcEEEEECCCCC
Confidence            577888999999999999976444

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=86.92  E-value=0.55  Score=42.32  Aligned_cols=21  Identities=29%  Similarity=0.613  Sum_probs=19.2

Q ss_pred             HHHHHHHHhHhccCCeEEEEE
Q 017983          301 IADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       301 ~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +...+.|+.|||||||.++|.
T Consensus        35 ~~~~~~~~~rvLk~~g~~~i~   55 (231)
T PF01555_consen   35 MEEWLKECYRVLKPGGSIFIF   55 (231)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCeeEEEE
Confidence            577999999999999999886

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=86.06  E-value=0.56  Score=42.32  Aligned_cols=109  Identities=20%  Similarity=0.278  Sum_probs=49.8

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCC-CC--CCcceeeec
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNT-YP--RTYDLLHSS  289 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lp-fp--~sFDlVh~~  289 (363)
                      +.|+|+.||.|+-+..++...-.   |+++|.. ..++.++.-    |.   +..+ .|+-+ .++ +.  ..||+|+++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~-~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFE-LLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHH-HGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHH-HHhhccccccccEEEEC
Confidence            37999999999999999987533   4455555 344433222    32   3333 34322 222 22  238999975


Q ss_pred             ---c--------ccc---cccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhC
Q 017983          290 ---F--------LLS---DVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSL  337 (363)
Q Consensus       290 ---~--------~l~---~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l  337 (363)
                         .        .|.   ++ .+-++.+++..+.++-+-  .++..-.+.-+..+.+++..+
T Consensus        77 PPWGGp~Y~~~~~fdL~~~~-~p~~~~~l~~~~~~~t~n--v~l~LPRn~dl~ql~~~~~~l  135 (163)
T PF09445_consen   77 PPWGGPSYSKKDVFDLEKSM-QPFNLEDLLKAARKITPN--VVLFLPRNSDLNQLSQLTREL  135 (163)
T ss_dssp             --BSSGGGGGSSSB-TTTSS-SS--HHHHHHHHHHH-S---EEEEEETTB-HHHHHHT----
T ss_pred             CCCCCccccccCccCHHHcc-CCCCHHHHHHHHHhhCCC--EEEEeCCCCCHHHHHHHhccc
Confidence               1        111   11 122456666666666432  333444444556666665433

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=85.36  E-value=2.7  Score=41.27  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=41.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-------eeeeccccccCCCCC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-------IGMYHDWCESFNTYP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-------~~~~~d~~e~~lpfp-~sFDlVh~  288 (363)
                      ...||.+|-|||.++..|.+.+..|   ++.... .|+....+|+.       ..+++.   .++--+ -.||.+++
T Consensus        59 tD~VLEvGPGTGnLT~~lLe~~kkV---vA~E~Dprmvael~krv~gtp~~~kLqV~~g---D~lK~d~P~fd~cVs  129 (315)
T KOG0820|consen   59 TDVVLEVGPGTGNLTVKLLEAGKKV---VAVEIDPRMVAELEKRVQGTPKSGKLQVLHG---DFLKTDLPRFDGCVS  129 (315)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCeE---EEEecCcHHHHHHHHHhcCCCccceeeEEec---ccccCCCcccceeec
Confidence            4699999999999999999987664   344443 57777777743       234442   133333 44777776

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=85.33  E-value=0.98  Score=42.64  Aligned_cols=66  Identities=15%  Similarity=0.216  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCC-CC-----CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEE
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQK-LT-----FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFI   74 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~-LP-----fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~   74 (363)
                      |.++..++.|++.    |+.  +.+...++.. |+     .++.+||+|++-.--    +.-..++.++.|.|||||.++
T Consensus       100 D~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k----~~y~~~~~~~~~ll~~GG~ii  175 (234)
T PLN02781        100 DIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADK----PNYVHFHEQLLKLVKVGGIIA  175 (234)
T ss_pred             ECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCH----HHHHHHHHHHHHhcCCCeEEE
Confidence            5566666666554    654  3444445422 33     235799999874211    112358889999999999998


Q ss_pred             EE
Q 017983           75 WS   76 (363)
Q Consensus        75 ~s   76 (363)
                      +.
T Consensus       176 ~d  177 (234)
T PLN02781        176 FD  177 (234)
T ss_pred             EE
Confidence            64

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=85.19  E-value=1  Score=41.37  Aligned_cols=66  Identities=24%  Similarity=0.371  Sum_probs=42.3

Q ss_pred             HHHHHHHcCCCceee-ecccCC-CC--CCCCCccEEEeCCcccccccC--------CCchhhhhcccccCCeEEEEEeC
Q 017983           12 QIQFALERGIPAILS-VIGTQK-LT--FPDDAYDLIHCARCRVHWDAQ--------GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        12 qvq~A~erg~p~~~~-~~~~~~-LP--fpd~sFD~v~cs~~~~~~~~~--------~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      ..+.+.++|+++... ..++.. |+  ++++++|.|+... --||+..        ...+|.++.|+|+|||.+.+.+.
T Consensus        57 a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD  134 (195)
T PF02390_consen   57 ALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD  134 (195)
T ss_dssp             HHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             HHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence            345555668875544 445655 33  6789999998743 2355431        12589999999999999999865

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=84.98  E-value=1.5  Score=41.54  Aligned_cols=67  Identities=21%  Similarity=0.271  Sum_probs=49.4

Q ss_pred             HHHHHHHHcCC-CceeeecccCCC-C--CCCCCccEEEeCCcccccccCC--------CchhhhhcccccCCeEEEEEeC
Q 017983           11 AQIQFALERGI-PAILSVIGTQKL-T--FPDDAYDLIHCARCRVHWDAQG--------GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        11 ~qvq~A~erg~-p~~~~~~~~~~L-P--fpd~sFD~v~cs~~~~~~~~~~--------~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      ..++.+.+.|+ .+.+...+|..+ +  ++++|.|-|.-... -||+-..        ..+|.++.|+|+|||.|.+.+.
T Consensus        87 ~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220          87 KALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             HHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence            45667778899 788888886553 3  46669999986543 2664321        2589999999999999999865

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=84.85  E-value=4.1  Score=38.83  Aligned_cols=94  Identities=16%  Similarity=0.073  Sum_probs=52.7

Q ss_pred             CCCCHHHHHHHHHc--CCCceeeecccC-CCCC-CCCCccEEEeCCccc--------------ccc-------cCC----
Q 017983            6 KDEHEAQIQFALER--GIPAILSVIGTQ-KLTF-PDDAYDLIHCARCRV--------------HWD-------AQG----   56 (363)
Q Consensus         6 ~D~~~~qvq~A~er--g~p~~~~~~~~~-~LPf-pd~sFD~v~cs~~~~--------------~~~-------~~~----   56 (363)
                      -|.++..++.|++.  .....+...+.. .++- -.+.||+|++.-=.+              |.+       .+.    
T Consensus       116 vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~  195 (251)
T TIGR03704       116 ADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVL  195 (251)
T ss_pred             EECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHH
Confidence            48889999888765  111244444533 2331 135799999853111              100       000    


Q ss_pred             CchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEE
Q 017983           57 GKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVAR  108 (363)
Q Consensus        57 ~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~  108 (363)
                      ..++..+.++|+|||.|++....-         ....+..+.+...|+....
T Consensus       196 ~~i~~~a~~~L~~gG~l~l~~~~~---------~~~~v~~~l~~~g~~~~~~  238 (251)
T TIGR03704       196 RRVAAGAPDWLAPGGHLLVETSER---------QAPLAVEAFARAGLIARVA  238 (251)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECcc---------hHHHHHHHHHHCCCCceee
Confidence            146667779999999999986621         1234555555555544443

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=84.81  E-value=0.7  Score=46.14  Aligned_cols=17  Identities=29%  Similarity=0.513  Sum_probs=11.9

Q ss_pred             CC-CCcceeeeccccccc
Q 017983          279 YP-RTYDLLHSSFLLSDV  295 (363)
Q Consensus       279 fp-~sFDlVh~~~~l~~~  295 (363)
                      || +|.|++|++.+||-+
T Consensus       103 fP~~Svh~~~Ss~alHWL  120 (334)
T PF03492_consen  103 FPSNSVHFGHSSYALHWL  120 (334)
T ss_dssp             S-TT-EEEEEEES-TTB-
T ss_pred             CCCCceEEEEEechhhhc
Confidence            78 999999999999854

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=84.80  E-value=2.9  Score=40.56  Aligned_cols=66  Identities=14%  Similarity=0.205  Sum_probs=39.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcC----ceeeeccccccCCCCCC--Ccceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG----LIGMYHDWCESFNTYPR--TYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rg----l~~~~~d~~e~~lpfp~--sFDlVh~~  289 (363)
                      ..+||.||+|.|.++..|+++...+. .+-.|. .+++.-.++-    -+.+++..+- ...|++  .++.|+++
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~-aiEiD~-~l~~~L~~~~~~~~n~~vi~~DaL-k~d~~~l~~~~~vVaN  102 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLERAARVT-AIEIDR-RLAEVLKERFAPYDNLTVINGDAL-KFDFPSLAQPYKVVAN  102 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhhcCeEE-EEEeCH-HHHHHHHHhcccccceEEEeCchh-cCcchhhcCCCEEEEc
Confidence            57999999999999999999765432 223342 3444444442    1344443221 234443  67888876

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=83.98  E-value=4.4  Score=40.44  Aligned_cols=99  Identities=19%  Similarity=0.117  Sum_probs=56.9

Q ss_pred             ceEEEecccc-cHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeecc-----ccccCCCC-C-CCcceeeeccc
Q 017983          222 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHD-----WCESFNTY-P-RTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~-G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d-----~~e~~lpf-p-~sFDlVh~~~~  291 (363)
                      .+||..|||. |.+++.+++ .+..  .+..++.+ ++++.+.+.+-..++..     +.+....+ + +.+|+|+-.-.
T Consensus       186 ~~VlV~g~G~vG~~~~~la~~~g~~--~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg  263 (386)
T cd08283         186 DTVAVWGCGPVGLFAARSAKLLGAE--RVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVG  263 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence            5899999987 777777766 3432  24444554 67887777732122211     11111122 2 47998876421


Q ss_pred             c-----------ccc-cccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          292 L-----------SDV-TQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       292 l-----------~~~-~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      -           .|. ....+....+.++.|.|+|||.+++..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            1           111 001122458999999999999998864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=83.96  E-value=2.8  Score=40.48  Aligned_cols=86  Identities=17%  Similarity=0.179  Sum_probs=59.0

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      |.++.-.+.|++.    |+.  +.+...|....-+++ .||+|+--     .+ ++-.++..+..+|+|||.+++-.|-+
T Consensus       126 E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD-----mp-~PW~~le~~~~~Lkpgg~~~~y~P~v  198 (256)
T COG2519         126 EIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFLD-----LP-DPWNVLEHVSDALKPGGVVVVYSPTV  198 (256)
T ss_pred             EecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEEc-----CC-ChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence            5566667777654    433  344445555556665 99999763     33 34569999999999999999998854


Q ss_pred             CCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983           81 YRHDDRHRSVWNAMVNLTESMCWKAVA  107 (363)
Q Consensus        81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~  107 (363)
                      .       ++.+.++.|-+. ||.-+.
T Consensus       199 e-------Qv~kt~~~l~~~-g~~~ie  217 (256)
T COG2519         199 E-------QVEKTVEALRER-GFVDIE  217 (256)
T ss_pred             H-------HHHHHHHHHHhc-Cccchh
Confidence            4       666667777666 775443

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=83.86  E-value=0.18  Score=42.66  Aligned_cols=38  Identities=32%  Similarity=0.769  Sum_probs=26.2

Q ss_pred             ccEEEeCCccccc-----ccCC-CchhhhhcccccCCeEEEEEeC
Q 017983           40 YDLIHCARCRVHW-----DAQG-GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        40 FD~v~cs~~~~~~-----~~~~-~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      ||+|.|--+ .-|     .|++ ..++.-+.+.|||||.|++-..
T Consensus         2 yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ   45 (110)
T PF06859_consen    2 YDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ   45 (110)
T ss_dssp             EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred             ccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            899999432 233     2221 3588999999999999999854

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=83.44  E-value=4.1  Score=38.89  Aligned_cols=87  Identities=14%  Similarity=0.208  Sum_probs=52.9

Q ss_pred             ceEEEeccc-ccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCC-----CCC-CCcceeeecccc
Q 017983          222 RNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFN-----TYP-RTYDLLHSSFLL  292 (363)
Q Consensus       222 r~VLDvGCG-~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~l-----pfp-~sFDlVh~~~~l  292 (363)
                      .+||..|+| .|.++..++. .++.   |+..+.+ ...+.+.+.|....+... +...     ..+ +.+|+|+.....
T Consensus       167 ~~vli~g~g~vG~~~~~la~~~G~~---V~~~~~s~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~D~vid~~g~  242 (338)
T cd08254         167 ETVLVIGLGGLGLNAVQIAKAMGAA---VIAVDIKEEKLELAKELGADEVLNSL-DDSPKDKKAAGLGGGFDVIFDFVGT  242 (338)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCE---EEEEcCCHHHHHHHHHhCCCEEEcCC-CcCHHHHHHHhcCCCceEEEECCCC
Confidence            588888876 4667777776 4544   3444444 566777666653222211 1000     123 678987643111


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                               ...+.++.|.|+|||.++..
T Consensus       243 ---------~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         243 ---------QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             ---------HHHHHHHHHHhhcCCEEEEE
Confidence                     34889999999999999875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=82.42  E-value=14  Score=34.38  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=68.9

Q ss_pred             EEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH----HhcCc---ee-eeccccccCCCCC-C-Ccceeeecccc
Q 017983          224 VMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII----FDRGL---IG-MYHDWCESFNTYP-R-TYDLLHSSFLL  292 (363)
Q Consensus       224 VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a----~~Rgl---~~-~~~d~~e~~lpfp-~-sFDlVh~~~~l  292 (363)
                      |.|+||--|.+..+|.+.+. +-.+.++|.+ .-|+.|    ...|+   +. .+.|.   .-+++ + ..|.|+.+.+=
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG---L~~l~~~e~~d~ivIAGMG   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG---LEVLKPGEDVDTIVIAGMG   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG---GGG--GGG---EEEEEEE-
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc---ccccCCCCCCCEEEEecCC
Confidence            68999999999999999874 2345666766 444433    33454   22 23331   22455 3 47888887664


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      -.     .+.++|.+....++..-.|++.-. .-...+++.+....|...-+
T Consensus        77 G~-----lI~~ILe~~~~~~~~~~~lILqP~-~~~~~LR~~L~~~gf~I~~E  122 (205)
T PF04816_consen   77 GE-----LIIEILEAGPEKLSSAKRLILQPN-THAYELRRWLYENGFEIIDE  122 (205)
T ss_dssp             HH-----HHHHHHHHTGGGGTT--EEEEEES-S-HHHHHHHHHHTTEEEEEE
T ss_pred             HH-----HHHHHHHhhHHHhccCCeEEEeCC-CChHHHHHHHHHCCCEEEEe
Confidence            42     256788888888888778887655 45678999999999987665

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=82.36  E-value=8.6  Score=38.76  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=69.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc----chHH-HHHhcCc---eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP----DTLS-IIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s----~~L~-~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+||||=||.|.|+..++.++...  |.+.|..    ..|. .+.--++   +..++..|.. .+.. +.||-|++...
T Consensus       189 GE~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~re-v~~~~~~aDrIim~~p  265 (341)
T COG2520         189 GETVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDARE-VAPELGVADRIIMGLP  265 (341)
T ss_pred             CCEEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHH-hhhccccCCEEEeCCC
Confidence            4699999999999999998876431  5555554    2332 2222222   2233333443 4445 99999987633


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCH---H----HHHHHHHHHHhCCce
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL---E----MINKLKPVLHSLQWS  340 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~---~----~~~~i~~l~~~l~W~  340 (363)
                      -.       -..++-..-+.||+||.+..=+..   +    ....+++.+..+.-+
T Consensus       266 ~~-------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~  314 (341)
T COG2520         266 KS-------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYK  314 (341)
T ss_pred             Cc-------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCc
Confidence            22       134777888889999998775432   1    467888888777543

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=81.50  E-value=2.6  Score=41.72  Aligned_cols=69  Identities=19%  Similarity=0.204  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCC-------CchhhhhcccccCCeEEE
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-------GKPLLELNRILRPGGFFI   74 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-------~~~l~E~~RVLrPGG~~~   74 (363)
                      -|++...|+.|++.    ++.......+.-..+-.+ .||+|+|.-   |+++..       .+.+.++.+.|++||.|.
T Consensus       188 vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNP---Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~  263 (300)
T COG2813         188 VDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNP---PFHAGKAVVHSLAQEIIAAAARHLKPGGELW  263 (300)
T ss_pred             EecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeCC---CccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence            48888899998765    555532333444456665 999999963   444321       157789999999999999


Q ss_pred             EEeC
Q 017983           75 WSAT   78 (363)
Q Consensus        75 ~s~~   78 (363)
                      +-..
T Consensus       264 iVan  267 (300)
T COG2813         264 IVAN  267 (300)
T ss_pred             EEEc
Confidence            8755

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=81.46  E-value=3.4  Score=40.84  Aligned_cols=113  Identities=21%  Similarity=0.278  Sum_probs=69.2

Q ss_pred             CCCCHHHHH----HHHHcCCCc--eeeecccC---CCCCCCCCccEEEeCCcccccccCC--CchhhhhcccccCCeEEE
Q 017983            6 KDEHEAQIQ----FALERGIPA--ILSVIGTQ---KLTFPDDAYDLIHCARCRVHWDAQG--GKPLLELNRILRPGGFFI   74 (363)
Q Consensus         6 ~D~~~~qvq----~A~erg~p~--~~~~~~~~---~LPfpd~sFD~v~cs~~~~~~~~~~--~~~l~E~~RVLrPGG~~~   74 (363)
                      +|-++.-|+    .+.+||+..  .+.+.++-   .|.=-+-..++++.|-...-|+++.  ...|.-+.+.|.|||+++
T Consensus       167 rDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lI  246 (311)
T PF12147_consen  167 RDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLI  246 (311)
T ss_pred             EeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence            566655554    445778874  45555532   2222234568888876666666543  346778999999999999


Q ss_pred             EEeCCCCCCChh----------------hHHHHHHHHHHHhhcceEEEEEecCCCceeEE
Q 017983           75 WSATPVYRHDDR----------------HRSVWNAMVNLTESMCWKAVARSVDSNRIGFV  118 (363)
Q Consensus        75 ~s~~~~~~~~~e----------------~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~  118 (363)
                      ++..|-....+-                -+..+.+|+.|...-..+++...-|.-|+.++
T Consensus       247 yTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTV  306 (311)
T PF12147_consen  247 YTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTV  306 (311)
T ss_pred             EcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhheeccCCceEE
Confidence            998642211110                01125678888888888877766555555433

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=81.39  E-value=2.5  Score=39.97  Aligned_cols=66  Identities=24%  Similarity=0.338  Sum_probs=43.1

Q ss_pred             CCCHHHHHHHHHc----CCCce--eee-cc-cCCCC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFALER----GIPAI--LSV-IG-TQKLT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p~~--~~~-~~-~~~LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      |..+...+.|++-    |+.-.  +.. .+ .+.|- +.+++||+|+--    ++..+-..++.++.+.|||||.+++-
T Consensus        91 E~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122          91 ERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             eCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            4566666677644    66543  222 12 22233 678999999863    23323346999999999999999884

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=81.25  E-value=1.9  Score=40.27  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=39.8

Q ss_pred             CCCHHHHHHHHHc----CCCc-eeeecccCCCCC-CCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIPA-ILSVIGTQKLTF-PDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p~-~~~~~~~~~LPf-pd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++..++.|+++    |... .+...+.. ..+ +...||.|++..+...       .-.++.+-||+||++++-..
T Consensus       104 E~~~~l~~~A~~~l~~~~~~nv~~~~gdg~-~g~~~~apfD~I~v~~a~~~-------ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  104 ERDPELAERARRNLARLGIDNVEVVVGDGS-EGWPEEAPFDRIIVTAAVPE-------IPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             ESBHHHHHHHHHHHHHHTTHSEEEEES-GG-GTTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred             CccHHHHHHHHHHHHHhccCceeEEEcchh-hccccCCCcCEEEEeeccch-------HHHHHHHhcCCCcEEEEEEc
Confidence            4567777777766    6654 44444432 233 3568999999755422       23456667999999999755

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=80.92  E-value=2.4  Score=38.10  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=19.4

Q ss_pred             chhhhhcccccCCeEEEEEeCCC
Q 017983           58 KPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus        58 ~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      ..+.|+.|||||||.+++.....
T Consensus        37 ~~~~~~~rvLk~~g~~~i~~~~~   59 (231)
T PF01555_consen   37 EWLKECYRVLKPGGSIFIFIDDR   59 (231)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE-CC
T ss_pred             HHHHHHHhhcCCCeeEEEEecch
Confidence            58899999999999999987643

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=80.80  E-value=3  Score=41.99  Aligned_cols=88  Identities=15%  Similarity=0.103  Sum_probs=57.3

Q ss_pred             CceEEEeccc-ccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCC-CCCCcceeeecccccccc
Q 017983          221 VRNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNT-YPRTYDLLHSSFLLSDVT  296 (363)
Q Consensus       221 ~r~VLDvGCG-~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lp-fp~sFDlVh~~~~l~~~~  296 (363)
                      ...|+=+|+| .|..|..+++ .+   ..|+.+|.+ +-++.|++-|...++..-.+..+. ....||+|+..-. .   
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~---  239 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P---  239 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h---
Confidence            3477777776 4467777776 44   356777877 788888888864333311111111 2255998886533 2   


Q ss_pred             ccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          297 QRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       297 ~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                            ..+...-+.||+||++++-
T Consensus       240 ------~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         240 ------ATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             ------hhHHHHHHHHhcCCEEEEE
Confidence                  3778888999999999986

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=80.20  E-value=13  Score=36.62  Aligned_cols=121  Identities=15%  Similarity=0.190  Sum_probs=70.5

Q ss_pred             hccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCcc-----hHHHHHhcCc---eeee-ccccccCCCCC--
Q 017983          212 GGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD-----TLSIIFDRGL---IGMY-HDWCESFNTYP--  280 (363)
Q Consensus       212 ~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~-----~L~~a~~Rgl---~~~~-~d~~e~~lpfp--  280 (363)
                      ..|.+.+|+  +|+.-|.|.|++.-+|+..-.-..-+.-.+.++     .++--++.|+   +.+. -|-|.  ..|.  
T Consensus        99 ~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~--~GF~~k  174 (314)
T KOG2915|consen   99 SMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG--SGFLIK  174 (314)
T ss_pred             HHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc--CCcccc
Confidence            345566665  999999999998888876321111233335442     3334444454   3333 46665  4554  


Q ss_pred             -CCcceeeeccccccccccCCHHHHHHHHhHhccCCe-EEE-EEcCHHHHHHHHHHHHhCCceeeee
Q 017983          281 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGG-YVL-VQDTLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       281 -~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG-~li-i~D~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                       ..+|.|+-.     ++++   -.++--.+.+||-+| +++ |+--.+.+++--+.+.++.|.....
T Consensus       175 s~~aDaVFLD-----lPaP---w~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~  233 (314)
T KOG2915|consen  175 SLKADAVFLD-----LPAP---WEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIET  233 (314)
T ss_pred             ccccceEEEc-----CCCh---hhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEE
Confidence             788888754     2222   225555566888866 333 3334555666667778888865443

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=80.06  E-value=8.3  Score=39.22  Aligned_cols=129  Identities=19%  Similarity=0.103  Sum_probs=70.3

Q ss_pred             cccCCCCCceEEEecccccHHHHHhhcC--CCe-EEEEeecCCc----chHHHHHhcCc----eeeeccc-----cc--c
Q 017983          214 LAINWSSVRNVMDMNASYGGFAAALIDQ--PLW-VMNVVPIDAP----DTLSIIFDRGL----IGMYHDW-----CE--S  275 (363)
Q Consensus       214 l~i~~~~~r~VLDvGCG~G~faa~L~~~--~v~-v~~v~~~d~s----~~L~~a~~Rgl----~~~~~d~-----~e--~  275 (363)
                      |++++  ..+||||.+-.|+=.+.|.+.  ..+ -..|+..|..    +||.-...|-.    ..+-|+.     +.  .
T Consensus       151 L~v~p--~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~  228 (375)
T KOG2198|consen  151 LGVKP--GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD  228 (375)
T ss_pred             cccCC--CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence            34555  469999999999977777652  111 0124555554    56655555532    1111210     00  0


Q ss_pred             CCCCC-CCcceeeec------cccccccc--------c--CC----HHHHHHHHhHhccCCeEEEEEc-------CHHH-
Q 017983          276 FNTYP-RTYDLLHSS------FLLSDVTQ--------R--CD----IADVAVEMDRILRPGGYVLVQD-------TLEM-  326 (363)
Q Consensus       276 ~lpfp-~sFDlVh~~------~~l~~~~~--------~--~~----~~~~L~Em~RVLRPGG~lii~D-------~~~~-  326 (363)
                      ..++. -.||-|.|.      ..+.+-++        .  -+    -..+|.-=.|.|||||.++.+.       ...+ 
T Consensus       229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV  308 (375)
T KOG2198|consen  229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVV  308 (375)
T ss_pred             CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHH
Confidence            01345 689999874      22222110        0  00    0356777789999999999984       2222 


Q ss_pred             HHHHHHHHHhCCceeeee
Q 017983          327 INKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       327 ~~~i~~l~~~l~W~~~~~  344 (363)
                      ...++++...+.|.....
T Consensus       309 ~~~L~~~~~~~~lv~~~~  326 (375)
T KOG2198|consen  309 QEALQKVGGAVELVDVSG  326 (375)
T ss_pred             HHHHHHhcCcccceeecc
Confidence            344555556777765544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	363
1xxl_A	239	The Crystal Structure Of Ycgj Protein From Bacillus		8e-04

>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus Subitilis At 2.1 A Resolution Length = 239

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 4   APKDEHEAQIQFALERGIPAILSVIGT-QKLTFPDDAYDLIHCARCRVHWDAQGGKPLLE 62
           A K+  E    FA E+G+  +    GT + L FPDD++D+I C R   H  +   K + E
Sbjct: 51  ATKEXVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITC-RYAAHHFSDVRKAVRE 109
Query: 63  LNRILRPGGFFI 74
           + R+L+  G F+
Sbjct: 110 VARVLKQDGRFL 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	1e-05
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-05
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	8e-05
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	1e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	1e-04
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-04
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-04
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	4e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	6e-04

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 7   DEHEAQIQFALERGIPAILSVIGTQ----KLTFPDDAYDLIHCARCRVHW-DAQGGKPLL 61
           D  E  I+ A E       +V        KL+F D  +D +      VH+   +  +   
Sbjct: 67  DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFK 126

Query: 62  ELNRILRPGGFFIWSATPVYRHDDRHRSVWNA 93
           E+ R+L+P G FI   T +     R +     
Sbjct: 127 EVRRVLKPSGKFIMYFTDLRELLPRLKESLVV 158

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 27  VIGTQKLTFPDDAYDLIHCARCRVHW-DAQGGKPLLELNRILRPGGFFI---WSATPVYR 82
             G Q  T   D+YD+I       H  D    + L      LRP G  +     A     
Sbjct: 134 CCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI 193

Query: 83  HDDRHRSVWNAM 94
            DD   SV   +
Sbjct: 194 LDDVDSSVCRDL 205

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 18/127 (14%)

Query: 10  EAQIQFALERGIPAILSVI--GTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRIL 67
           E  +  A   G    ++       KL  P D++DL + +   +H+     +    +++ L
Sbjct: 76  EKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLA-LHYVEDVARLFRTVHQAL 134

Query: 68  RPGGFFIWSAT---------PVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFV 118
            PGG F++S           P +  D   R  W     L E        R  D    G V
Sbjct: 135 SPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEG------PRKTDWLAKGVV 188

Query: 119 IYQKPVS 125
            + + V 
Sbjct: 189 KHHRTVG 195

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 31  QKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGG-----FFIWSATPVYRHDD 85
           + +  PD++   +       H      K L E  R+L+PGG     +    A+P +   +
Sbjct: 96  RAIPLPDESVHGVIVVHL-WHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQE 154

Query: 86  RHRSVW 91
           R R+  
Sbjct: 155 RWRAFA 160

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 7   DEHEAQIQFALERGIPAILSVIGTQ----KLTFPDDAYDLIHCARCRVHWDAQGGKPLL- 61
           +  + Q++ A          +  ++    KL F D++   ++      H      K  + 
Sbjct: 53  EISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAID 112

Query: 62  ELNRILRPGGFFI 74
           E+ R+L+PGG   
Sbjct: 113 EIKRVLKPGGLAC 125

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 10  EAQIQFALERGIPAILS-VIG-TQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRIL 67
           E  IQ   ERG    LS + G    L F ++ ++ I      + W  +  + L E+ R+L
Sbjct: 85  EVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMA-INSLEWTEEPLRALNEIKRVL 143

Query: 68  RPGGFFI 74
           +  G+  
Sbjct: 144 KSDGYAC 150

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 10  EAQIQFALERGIPAILSVIGT-QKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILR 68
               Q A     P +    G  + L  PD + D +      +H  +   K   E+ RI+R
Sbjct: 66  IVMRQQA--VVHPQVEWFTGYAENLALPDKSVDGVISILA-IHHFSHLEKSFQEMQRIIR 122

Query: 69  PGG--FFIWSATPVYR 82
            G      +      R
Sbjct: 123 DGTIVLLTFDIRLAQR 138

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 4/99 (4%)

Query: 7   DEHEAQIQFALER--GIPAI-LSVIGTQKLTFPDDAYDLIHCARCRVHW-DAQGGKPLLE 62
           +  +  ++ A     G+P     +   +  T P + YDLI      ++  DA   K    
Sbjct: 123 EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKH 182

Query: 63  LNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESM 101
             + L P G+  +                +++       
Sbjct: 183 CQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHY 221

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 16  ALERGIPAILSVIGT-QKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFI 74
           A E+G+  +    GT + L FPDD++D+I C R   H  +   K + E+ R+L+  G F+
Sbjct: 63  AQEKGVENVRFQQGTAESLPFPDDSFDIITC-RYAAHHFSDVRKAVREVARVLKQDGRFL 121

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 16  ALERGIPAILSVIGT-QKLTFPDDAYDLIHCARCRVHW-DAQGGKPLLELNRILRPGGFF 73
             + GI  +  +      L F D ++D I       H    +    L  L ++L+PGG  
Sbjct: 81  TEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEA--LKSLKKVLKPGGTI 138

Query: 74  I-----WSATPVYRHDDRHRSVWNAMVNLTESM 101
                   +   +    +    WN ++ +   M
Sbjct: 139 TVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYM 171

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 7   DEHEAQIQFALER-GIPAILSVIG-TQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELN 64
           D  E  +  A  +   P +       + +    DAY+++  +   +H+ A       ++ 
Sbjct: 74  DLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA-LHYIASFDDICKKVY 132

Query: 65  RILRPGGFFIWSAT-PVYRHDDRHR 88
             L+  G FI+S   PV+  D R  
Sbjct: 133 INLKSSGSFIFSVEHPVFTADGRQD 157

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 14  QFALERGIPAILSVIGT-QKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGF 72
            F    G   +  V G  +++ F D+ + ++ C     H+       + E  R+L+ GG 
Sbjct: 77  AFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPA-SFVSEAYRVLKKGGQ 135

Query: 73  FI 74
            +
Sbjct: 136 LL 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.58
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.54
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.53
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.52
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.52
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.51
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.51
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.5
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.5
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.5
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.5
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.5
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.49
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.49
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.48
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.48
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.47
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.47
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.47
3ocj_A	305	Putative exported protein; structural genomics, PS	99.46
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.46
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.46
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.46
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.46
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.45
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.45
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.45
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.44
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.44
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.43
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.43
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.43
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.43
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.43
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.43
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.43
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.42
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.42
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.42
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.42
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.42
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.42
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.42
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.42
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.42
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.41
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.41
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.41
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.41
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.4
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.4
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.4
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.39
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.39
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.39
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.39
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.38
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.38
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.37
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.37
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.37
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.36
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.36
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.36
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.35
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.35
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.35
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.35
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.35
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.34
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.33
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.33
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.33
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.33
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.33
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.32
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.32
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.32
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.31
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.3
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.3
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.29
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.29
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.29
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.28
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.27
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.27
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.26
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.26
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.25
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.25
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.25
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.24
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.24
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.22
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.22
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.22
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.21
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.21
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.21
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.2
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.19
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.19
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.18
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.18
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.17
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.17
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.16
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.16
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.16
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.15
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.15
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.14
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.14
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.14
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.14
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.13
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.13
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.12
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.12
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.12
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.11
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.11
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.11
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.11
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.11
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.1
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.1
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.1
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.1
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.1
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.1
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.1
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.09
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.09
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.09
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.09
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.09
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.08
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.08
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.06
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.06
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.06
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.06
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.05
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.05
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.05
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.04
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.03
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.03
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.03
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.03
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.03
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.02
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.02
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.02
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.01
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.01
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.0
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.0
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.0
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.99
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.99
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.98
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.98
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.97
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.97
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.97
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.97
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.96
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.96
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.96
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.95
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.95
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.95
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.95
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.95
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.92
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.92
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.92
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.91
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.9
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.9
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.89
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.89
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.89
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.89
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.88
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.88
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.88
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.88
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.88
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.87
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.87
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.86
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.85
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.84
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.84
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.84
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.84
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.83
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.83
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.82
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.81
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.81
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.81
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.8
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.8
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.8
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.79
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.79
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.79
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.78
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.78
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.78
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.77
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.76
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.76
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.76
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.74
2o07_A	304	Spermidine synthase; structural genomics, structur	98.74
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.72
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.72
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.72
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.71
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.7
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.69
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.68
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.68
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.68
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.67
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.65
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.64
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.64
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.64
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.63
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.62
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.62
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.61
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.61
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.6
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.6
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.6
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.6
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.58
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.58
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.57
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.57
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.56
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.56
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.56
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.56
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.56
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.56
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.55
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.55
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.55
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.54
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.53
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.52
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.52
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.52
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.52
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.52
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.51
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.51
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.51
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.5
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.49
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.49
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.48
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.48
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.48
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.47
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.47
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.47
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.47
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.46
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.46
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.45
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.45
3ocj_A	305	Putative exported protein; structural genomics, PS	98.44
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.43
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.43
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.42
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.41
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.37
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.37
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.36
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.36
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.35
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.35
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.35
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.34
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.34
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.33
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.33
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.33
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.33
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.32
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.32
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.31
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.3
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.3
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.29
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.29
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.26
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.25
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.25
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.24
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.24
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.24
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.23
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.22
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.21
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.2
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.2
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.19
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.18
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.17
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.16
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.16
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.15
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.14
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.13
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.1
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.09
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.08
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.07
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.06
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.06
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.05
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.03
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.02
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.0
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.99
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.98
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.97
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.96
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.96
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.95
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	97.94
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.93
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.93
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.93
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.92
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.9
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.9
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.89
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.87
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.85
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.8
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	97.8
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	97.79
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	97.78
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.78
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.77
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.77
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.75
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.75
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.74
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.74
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.74
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.74
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.73
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.72
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.72
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.69
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.69
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	97.68
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.68
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.67
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	97.67
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	97.66
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.65
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.64
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.63
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.61
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.6
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.6
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.59
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.58
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.58
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.58
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	97.57
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.55
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.54
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.53
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.53
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.52
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.51
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.5
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.49
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.49
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.49
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.49
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.47
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.46
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.45
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.45
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	97.44
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.43
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.41
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.41
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.41
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	97.37
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.37
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.36
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.36
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.35
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.35
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.35
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.34
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.31
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.31
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.29
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.29
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.28
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.27
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.26
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.26
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.25
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.25
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.24
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.23
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.23
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.23
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.22
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.21
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.2
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.19
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.18
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.17
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.17
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.14
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.13
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.12
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.12
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.11
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.11
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.1
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.1
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.09
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.08
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.07
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.07
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.06
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.06
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.05
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.04
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.03
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.03
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.02
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.0
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	96.99
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	96.99
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.98
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	96.98
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	96.97
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.96
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	96.96
3khk_A	544	Type I restriction-modification system methylation	96.94
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	96.91
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	96.87
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.86
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.86
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.82
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.8
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.79
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.76
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.75
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.75
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.74
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.72
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	96.66
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	96.66
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.65
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	96.65
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.63
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	96.61
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.59
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	96.56
2o07_A	304	Spermidine synthase; structural genomics, structur	96.55
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.55
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.51
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.46
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.45
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	96.43
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	96.42
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.39
3lkd_A	542	Type I restriction-modification system methyltrans	96.31
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.31
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.31
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.3
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	96.28
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.26
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.26
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.25
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	96.22
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	96.19

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.58  E-value=1.4e-15  Score=143.31  Aligned_cols=93  Identities=14%  Similarity=0.143  Sum_probs=76.4

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeeccccccccccC
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRC  299 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~  299 (363)
                      .+|||+|||+|.++..|++.+.   +|+++|.+ .|++.|.++.-+...+..++ .+||+ ++||+|+|..+|||+.   
T Consensus        41 ~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e-~~~~~~~sfD~v~~~~~~h~~~---  113 (257)
T 4hg2_A           41 GDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAE-DTGLPPASVDVAIAAQAMHWFD---  113 (257)
T ss_dssp             SEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTT-CCCCCSSCEEEEEECSCCTTCC---
T ss_pred             CCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhh-hhcccCCcccEEEEeeehhHhh---
Confidence            5899999999999999998865   46778888 89988876644444444444 58999 9999999999997652   


Q ss_pred             CHHHHHHHHhHhccCCeEEEEEc
Q 017983          300 DIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       300 ~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                       .+.++.|+.|||||||.|++.+
T Consensus       114 -~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          114 -LDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             -HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -HHHHHHHHHHHcCCCCEEEEEE
Confidence             5789999999999999998864

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.54  E-value=1.3e-14  Score=133.91  Aligned_cols=96  Identities=21%  Similarity=0.281  Sum_probs=77.4

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      +..+|||+|||+|.++..|++...   .++++|.+ .|++.+.++    |+  +.......+ .+||+ ++||+|+|..+
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~-~l~~~~~~fD~V~~~~~  112 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE-QMPFTDERFHIVTCRIA  112 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTCEEEEEEESC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHH-hCCCCCCCEEEEEEhhh
Confidence            346999999999999999998754   57888988 899888765    32  233322233 48899 99999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ++|+++   ...+|.|+.|+|||||++++.+
T Consensus       113 l~~~~d---~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          113 AHHFPN---PASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             GGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHhcCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence            999864   5789999999999999999975

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.53  E-value=8.7e-14  Score=124.97  Aligned_cols=131  Identities=15%  Similarity=0.216  Sum_probs=95.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-----------ceeeeccccccCCCCC-CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----------LIGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-----------l~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      ..+|||+|||+|.++..|++... ...++++|.+ .+++.+.++-           -+..+.... ..++++ ++||+|+
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDAAT  107 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSEEE
T ss_pred             CCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCEEE
Confidence            46999999999999999998642 1257788888 8898887762           122232222 246777 8999999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHH----------------------HHHHH----HHHHhCCcee
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEM----------------------INKLK----PVLHSLQWST  341 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~----------------------~~~i~----~l~~~l~W~~  341 (363)
                      |..+++|+++. .+..+|.++.|+|||||.+++......                      ...+.    +++.+-.+++
T Consensus       108 ~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v  186 (219)
T 3jwg_A          108 VIEVIEHLDEN-RLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV  186 (219)
T ss_dssp             EESCGGGCCHH-HHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred             EHHHHHhCCHH-HHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence            99999999643 356899999999999998777643221                      22333    7777777776


Q ss_pred             eee-----------cceEEEEEec
Q 017983          342 NIY-----------HDQFLVGKKG  354 (363)
Q Consensus       342 ~~~-----------~~~~li~~K~  354 (363)
                      ...           .-+|+|++|+
T Consensus       187 ~~~~~g~~~~~~g~~~qi~~~~~~  210 (219)
T 3jwg_A          187 RFLQIGEIDDEFGSPTQMGVFTLG  210 (219)
T ss_dssp             EEEEESCCCTTSCCSEEEEEEEEC
T ss_pred             EEEecCCccccCCCCeEEEEEecc
Confidence            655           5678999886

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.52  E-value=3.3e-14  Score=131.40  Aligned_cols=97  Identities=16%  Similarity=0.212  Sum_probs=78.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCCCCcceeeecc-ccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYPRTYDLLHSSF-LLSDVTQ  297 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp~sFDlVh~~~-~l~~~~~  297 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .|++.+.++.. +..+....+ .+|++++||+|+|.. +|+|+.+
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~fD~v~~~~~~l~~~~~  126 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMR-DFSLGRRFSAVTCMFSSIGHLAG  126 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-TCCCSCCEEEEEECTTGGGGSCH
T ss_pred             CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChH-HCCccCCcCEEEEcCchhhhcCC
Confidence            46999999999999999998864   46788888 89999988742 222322222 356679999999998 9999976


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEE
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ..+...+|.++.|+|||||+++|.
T Consensus       127 ~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          127 QAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            666788999999999999999995

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.52  E-value=1.3e-14  Score=136.83  Aligned_cols=98  Identities=12%  Similarity=0.193  Sum_probs=75.0

Q ss_pred             ceEEEecccccHHHHHhhcCC-CeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~-v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      .+|||+|||+|.++..|++.. .....|+++|.+ .||+.|+++    +.   +..+..   ....+| ..||+|++.++
T Consensus        72 ~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~---D~~~~~~~~~d~v~~~~~  148 (261)
T 4gek_A           72 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG---DIRDIAIENASMVVLNFT  148 (261)
T ss_dssp             CEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES---CTTTCCCCSEEEEEEESC
T ss_pred             CEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeec---ccccccccccccceeeee
Confidence            599999999999999998641 112357888998 899999876    22   233332   233455 77999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      |+|++.. +...+|.|++|+|||||.++++|.
T Consensus       149 l~~~~~~-~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          149 LQFLEPS-ERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeecCch-hHhHHHHHHHHHcCCCcEEEEEec
Confidence            9998643 456799999999999999999863

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.51  E-value=2.2e-14  Score=131.11  Aligned_cols=97  Identities=11%  Similarity=0.226  Sum_probs=78.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCC-CCC-CCcceeeeccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFN-TYP-RTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~l-pfp-~sFDlVh~~~~l~~~~~  297 (363)
                      ..+|||+|||+|.++..|++.+..   |+++|.+ .+++.+.++  +..+....+..+ ||+ ++||+|+|..+++|+++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~  116 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP  116 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred             CCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc
Confidence            469999999999999999887654   6788988 899999888  222322222222 888 99999999999999974


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                       .++..+|.|+.|+|||||++++...
T Consensus       117 -~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          117 -ERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             -GGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             -HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence             3568899999999999999999853

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.51  E-value=1e-13  Score=122.94  Aligned_cols=94  Identities=21%  Similarity=0.236  Sum_probs=76.2

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      +|||+|||+|.++..|++.+  ...++++|.+ .+++.+.++    |+   +..+....+ .+|++ ++||+|++..+++
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~l~  122 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQS--DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVH-NIPIEDNYADLIVSRGSVF  122 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHS--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTT-BCSSCTTCEEEEEEESCGG
T ss_pred             EEEEECCCCCHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHH-HCCCCcccccEEEECchHh
Confidence            99999999999999998862  3467888988 888888777    22   333333233 37888 9999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |+.   +...+|.|+.|+|||||++++.+
T Consensus       123 ~~~---~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          123 FWE---DVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             GCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcc---CHHHHHHHHHHhCCCCCEEEEEe
Confidence            984   46889999999999999999985

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.50  E-value=3.7e-14  Score=125.72  Aligned_cols=119  Identities=11%  Similarity=0.131  Sum_probs=93.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCC-CCcceeeeccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~  297 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .|++.+.++.. +..+....+ .+|++ ++||+|+|..+++|++ 
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~~-  116 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTIT-DLSDSPKRWAGLLAWYSLIHMG-  116 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGG-GGGGSCCCEEEEEEESSSTTCC-
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCccc-ccccCCCCeEEEEehhhHhcCC-
Confidence            35899999999999999998865   46788888 89999988742 222322233 37788 9999999999999986 


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEEcCHH----------------HHHHHHHHHHhCCceeeee
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQDTLE----------------MINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~D~~~----------------~~~~i~~l~~~l~W~~~~~  344 (363)
                      ..++..+|.++.|+|||||++++.+...                ....+.+++....|+....
T Consensus       117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  179 (203)
T 3h2b_A          117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS  179 (203)
T ss_dssp             TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEE
Confidence            3467899999999999999999986321                2577888888888876544

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.50  E-value=5.6e-14  Score=128.70  Aligned_cols=104  Identities=18%  Similarity=0.329  Sum_probs=80.7

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-C
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-R  281 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~  281 (363)
                      ++..+.+.+  ..+|||+|||+|.++..|++...   .++++|.+ .|++.+.++    |+  +.......+ .+||+ +
T Consensus        13 ~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~   86 (239)
T 1xxl_A           13 MIKTAECRA--EHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE-SLPFPDD   86 (239)
T ss_dssp             HHHHHTCCT--TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT-BCCSCTT
T ss_pred             HHHHhCcCC--CCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccc-cCCCCCC
Confidence            344444443  46999999999999999998754   57788888 788877665    32  333333334 37898 9


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +||+|+|..+++|+.   ++..+|.|+.|+|||||++++.+
T Consensus        87 ~fD~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           87 SFDIITCRYAAHHFS---DVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             CEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEEEECCchhhcc---CHHHHHHHHHHHcCCCcEEEEEE
Confidence            999999999999986   46889999999999999999975

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.50  E-value=1.3e-14  Score=130.74  Aligned_cols=102  Identities=10%  Similarity=-0.054  Sum_probs=75.9

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------------------ceeeec
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------------------LIGMYH  270 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------------------l~~~~~  270 (363)
                      |+..+.+..  ..+|||+|||+|.++..|++++.   .|+++|.| .|++.|.++.                  -+..+.
T Consensus        14 ~~~~l~~~~--~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~   88 (203)
T 1pjz_A           14 YWSSLNVVP--GARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   88 (203)
T ss_dssp             HHHHHCCCT--TCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHHhcccCC--CCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence            444444433  35999999999999999998764   47888998 8999998762                  122222


Q ss_pred             cccccCCCCC--CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEE
Q 017983          271 DWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYV  318 (363)
Q Consensus       271 d~~e~~lpfp--~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~l  318 (363)
                      .... .+|++  ++||+|++..+|+|++. .+...++.||.|+|||||++
T Consensus        89 ~d~~-~l~~~~~~~fD~v~~~~~l~~l~~-~~~~~~l~~~~r~LkpgG~~  136 (203)
T 1pjz_A           89 GDFF-ALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSG  136 (203)
T ss_dssp             ECCS-SSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEE
T ss_pred             Cccc-cCCcccCCCEEEEEECcchhhCCH-HHHHHHHHHHHHHcCCCcEE
Confidence            2222 36665  79999999999999863 34567999999999999983

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.50  E-value=3.4e-14  Score=128.27  Aligned_cols=95  Identities=18%  Similarity=0.276  Sum_probs=76.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc--eeeeccccccCCCCC-CCcceeeecccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT  296 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~  296 (363)
                      ..+|||+|||+|.++..|++.+.   +|+++|.+ .+++.+.++..  +..+....+. + ++ ++||+|+|..+|+|++
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~-~-~~~~~fD~v~~~~~l~~~~  117 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFED-A-QLPRRYDNIVLTHVLEHID  117 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGG-C-CCSSCEEEEEEESCGGGCS
T ss_pred             CCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHH-c-CcCCcccEEEEhhHHHhhc
Confidence            35899999999999999998764   46788888 89999988742  3333333333 3 45 9999999999999986


Q ss_pred             ccCCHHHHHHHHh-HhccCCeEEEEEcC
Q 017983          297 QRCDIADVAVEMD-RILRPGGYVLVQDT  323 (363)
Q Consensus       297 ~~~~~~~~L~Em~-RVLRPGG~lii~D~  323 (363)
                      +   ...+|.|+. |+|||||++++.+.
T Consensus       118 ~---~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          118 D---PVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             S---HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             C---HHHHHHHHHHHhcCCCCEEEEEcC
Confidence            4   578999999 99999999999863

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.50  E-value=4.7e-14  Score=126.28  Aligned_cols=130  Identities=14%  Similarity=0.108  Sum_probs=95.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c--eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L--IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l--~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|++.......++++|.+ .+++.+.++.    +  +.......+ .++++ ++||+|++..++
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l  116 (219)
T 3dh0_A           38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN-KIPLPDNTVDFIFMAFTF  116 (219)
T ss_dssp             TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTT-BCSSCSSCEEEEEEESCG
T ss_pred             CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccc-cCCCCCCCeeEEEeehhh
Confidence            4599999999999999998753001246778888 7888777662    1  333332222 37788 999999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcCH-------------HHHHHHHHHHHhCCceeeee-----cceEEEEEec
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-------------EMINKLKPVLHSLQWSTNIY-----HDQFLVGKKG  354 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-------------~~~~~i~~l~~~l~W~~~~~-----~~~~li~~K~  354 (363)
                      +|+.   +...+|.|+.|+|||||++++.+..             ...+.+.++++...++....     ...+++++|+
T Consensus       117 ~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~  193 (219)
T 3dh0_A          117 HELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIV  193 (219)
T ss_dssp             GGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEECC
T ss_pred             hhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEEec
Confidence            9985   4578999999999999999998621             12577888888888875443     3455666665

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.49  E-value=2.4e-13  Score=122.93  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=77.0

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c-eeeeccccccCCCCCCCcceeeecc-cc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-IGMYHDWCESFNTYPRTYDLLHSSF-LL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l-~~~~~d~~e~~lpfp~sFDlVh~~~-~l  292 (363)
                      +..+|||+|||+|.++..|++.+.   .++++|.+ .|++.+.++.    + +..+....+ .++++++||+|++.. +|
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~fD~v~~~~~~l  112 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NLNINRKFDLITCCLDST  112 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GCCCSCCEEEEEECTTGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc-cCCccCCceEEEEcCccc
Confidence            346999999999999999998764   47788988 8888887762    1 222322222 256669999999998 99


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +|+.+..++..+|.++.|+|||||++++.
T Consensus       113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            99965556789999999999999999984

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.49  E-value=1.2e-13  Score=121.18  Aligned_cols=117  Identities=20%  Similarity=0.273  Sum_probs=85.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .+++.+.++    ++  +.......+ .++++++||+|++..+++
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~D~v~~~~~l~  108 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLN-NLTFDRQYDFILSTVVLM  108 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGG-GCCCCCCEEEEEEESCGG
T ss_pred             CCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchh-hCCCCCCceEEEEcchhh
Confidence            45999999999999999998754   47788887 788777664    22  232322222 255578999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcCH--------------HHHHHHHHHHHhCCceeeee
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDTL--------------EMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--------------~~~~~i~~l~~~l~W~~~~~  344 (363)
                      |++ ..+...+|.++.|+|||||++++.+..              -..++++++...  |+....
T Consensus       109 ~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~  170 (199)
T 2xvm_A          109 FLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKY  170 (199)
T ss_dssp             GSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred             hCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEe
Confidence            986 335788999999999999998876421              023566777766  776554

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.48  E-value=3.3e-13  Score=120.86  Aligned_cols=98  Identities=16%  Similarity=0.235  Sum_probs=77.1

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc--eeeeccccccCCCCCCCcceeeecccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYPRTYDLLHSSFLLSDVT  296 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl--~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~  296 (363)
                      +..+|||+|||+|.++..|++.+.   .++++|.+ .+++.+.++..  +..+....+ .+|++++||+|+|..+++|++
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~-~~~~~~~fD~v~~~~~l~~~~  120 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFL-SFEVPTSIDTIVSTYAFHHLT  120 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSS-SCCCCSCCSEEEEESCGGGSC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChh-hcCCCCCeEEEEECcchhcCC
Confidence            346999999999999999998754   47788988 89998888732  233332222 356669999999999999987


Q ss_pred             ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          297 QRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       297 ~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +. ....+|.|+.|+|||||++++.+
T Consensus       121 ~~-~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          121 DD-EKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             HH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence            54 22349999999999999999986

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.48  E-value=1e-13  Score=119.60  Aligned_cols=130  Identities=17%  Similarity=0.139  Sum_probs=96.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCC-CCcceeeecccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT  296 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~  296 (363)
                      +..+|||+|||+|.++..|++..  . .++++|.+ .+++.+.++.. +..+..   . +|++ ++||+|++..+++|++
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~~~~v~~~~~---d-~~~~~~~~D~v~~~~~l~~~~   89 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFA--T-KLYCIDINVIALKEVKEKFDSVITLSD---P-KEIPDNSVDFILFANSFHDMD   89 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTE--E-EEEEECSCHHHHHHHHHHCTTSEEESS---G-GGSCTTCEEEEEEESCSTTCS
T ss_pred             CCCeEEEECCCCCHHHHHHHhhc--C-eEEEEeCCHHHHHHHHHhCCCcEEEeC---C-CCCCCCceEEEEEccchhccc
Confidence            34699999999999999999875  2 78899998 89998888732 233332   2 7888 9999999999999985


Q ss_pred             ccCCHHHHHHHHhHhccCCeEEEEEcCHH-------------HHHHHHHHHHhCCceeeee-----cceEEEEEeccCCC
Q 017983          297 QRCDIADVAVEMDRILRPGGYVLVQDTLE-------------MINKLKPVLHSLQWSTNIY-----HDQFLVGKKGFWRP  358 (363)
Q Consensus       297 ~~~~~~~~L~Em~RVLRPGG~lii~D~~~-------------~~~~i~~l~~~l~W~~~~~-----~~~~li~~K~~w~~  358 (363)
                         +...+|.|+.|+|||||++++.+...             ..+.++++++  .|+....     ..-.+++.|+-=++
T Consensus        90 ---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~~~~~  164 (170)
T 3i9f_A           90 ---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRKTSEG  164 (170)
T ss_dssp             ---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEECCCCS
T ss_pred             ---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecCCCCc
Confidence               46889999999999999999986321             1355666666  6665433     34567777765444


Q ss_pred             CCC
Q 017983          359 TGG  361 (363)
Q Consensus       359 ~~~  361 (363)
                      .+.
T Consensus       165 ~~~  167 (170)
T 3i9f_A          165 HHH  167 (170)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.47  E-value=1.3e-13  Score=129.59  Aligned_cols=95  Identities=21%  Similarity=0.247  Sum_probs=76.8

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|++. +.   .++++|.+ .|++.+.++    |+   +.......+ .+||+ ++||+|++..
T Consensus        83 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~  158 (297)
T 2o57_A           83 QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIPCEDNSYDFIWSQD  158 (297)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCSSCTTCEEEEEEES
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcc-cCCCCCCCEeEEEecc
Confidence            469999999999999999875 43   57788888 888887765    22   333332233 47898 9999999999


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +++|+++   ...+|.|+.|+|||||++++.+
T Consensus       159 ~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          159 AFLHSPD---KLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             CGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhcCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence            9999875   6889999999999999999986

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.47  E-value=7.8e-14  Score=124.82  Aligned_cols=101  Identities=17%  Similarity=0.215  Sum_probs=79.9

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----eeeeccccccCCCCCCCcceeeeccccc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      .+..+|||+|||+|.++..|++.+   ..++++|.+ .+++.+.++..    +..+....+ .++.+++||+|+|..+++
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~fD~v~~~~~l~  125 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDIL-QFSTAELFDLIVVAEVLY  125 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTT-TCCCSCCEEEEEEESCGG
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchh-hCCCCCCccEEEEccHHH
Confidence            345799999999999999999874   368889998 89998888742    333332233 244239999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      |+++...+..+|.++.|+|||||++++.+.
T Consensus       126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            998765567889999999999999999753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.47  E-value=1.4e-13  Score=126.25  Aligned_cols=98  Identities=15%  Similarity=0.193  Sum_probs=79.5

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCCCCC-CCcceeeecccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      +..+|||+|||+|.++..|++.+..  .++++|.+ .+++.+.++..   +.......+ .+|++ ++||+|+|..+++|
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~  120 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIE-DIAIEPDAYNVVLSSLALHY  120 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGG-GCCCCTTCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchh-hCCCCCCCeEEEEEchhhhh
Confidence            4579999999999999999988653  57888988 89999988742   333332233 47888 99999999999999


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +.   ++..+|.++.|+|||||++++...
T Consensus       121 ~~---~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          121 IA---SFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             CS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hh---hHHHHHHHHHHHcCCCcEEEEEeC
Confidence            84   468899999999999999999743

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.46  E-value=9.1e-14  Score=132.12  Aligned_cols=101  Identities=19%  Similarity=0.075  Sum_probs=76.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCCCCCCCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|+........|+++|.+ .+++.+.++.    +   +.++..... .+|++++||+|++..++
T Consensus       119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~fD~v~~~~~~  197 (305)
T 3ocj_A          119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW-KLDTREGYDLLTSNGLN  197 (305)
T ss_dssp             TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGG-GCCCCSCEEEEECCSSG
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchh-cCCccCCeEEEEECChh
Confidence            4689999999999999985221112257788888 8888887663    2   333333333 36777999999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +|+++......++.|+.|+|||||++++.+
T Consensus       198 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          198 IYEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             GGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             hhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            999766544568999999999999999987

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.46  E-value=4.4e-14  Score=129.05  Aligned_cols=119  Identities=16%  Similarity=0.189  Sum_probs=89.8

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC-CCcceeeeccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      +..+|||+|||+|.++..|+..+.  ..++++|.+ .+++.+.++.    .+.......+ .+|++ ++||+|+|..+++
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~  169 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASME-TATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGG-GCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHH-HCCCCCCCeEEEEEcchhh
Confidence            456999999999999999987642  246788888 8999988874    2333332233 37888 9999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcCH----------------HHHHHHHHHHHhCCceee
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDTL----------------EMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~----------------~~~~~i~~l~~~l~W~~~  342 (363)
                      |+++ .++..+|.++.|+|||||+++|.+..                ...+.+.++++.-.++..
T Consensus       170 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  233 (254)
T 1xtp_A          170 YLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV  233 (254)
T ss_dssp             GSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred             hCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEE
Confidence            9864 34688999999999999999998731                023667777776666554

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=1.5e-13  Score=127.66  Aligned_cols=96  Identities=20%  Similarity=0.304  Sum_probs=78.0

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeeccccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~  297 (363)
                      +..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++..+..+...++ .+||+ ++||+|+|..+++|+. 
T Consensus        34 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~~-  108 (261)
T 3ege_A           34 KGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAE-NLALPDKSVDGVISILAIHHFS-  108 (261)
T ss_dssp             TTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTT-SCCSCTTCBSEEEEESCGGGCS-
T ss_pred             CCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchh-hCCCCCCCEeEEEEcchHhhcc-
Confidence            346999999999999999998654   46788988 78887777754444444444 48898 9999999999999985 


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                        +...+|.|+.|+|| ||++++.+.
T Consensus       109 --~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A          109 --HLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             --SHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             --CHHHHHHHHHHHhC-CcEEEEEEc
Confidence              46889999999999 998888753

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.46  E-value=7e-14  Score=128.12  Aligned_cols=98  Identities=17%  Similarity=0.236  Sum_probs=78.7

Q ss_pred             CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc----eeeeccccccCCCCC-CCcceeeecccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl----~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      +..+|||+|||+|.++..|++. +.   .|+++|.+ .+++.+.++..    +.......+ .+|++ ++||+|++..++
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l  130 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDIL-TKEFPENNFDLIYSRDAI  130 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTT-TCCCCTTCEEEEEEESCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccc-cCCCCCCcEEEEeHHHHH
Confidence            3469999999999999999885 43   47788888 89999998852    333332223 36898 999999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +|++. .+...+|.|+.|+|||||++++.+
T Consensus       131 ~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          131 LALSL-ENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             GGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhcCh-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence            99842 346889999999999999999986

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.46  E-value=9.6e-14  Score=127.19  Aligned_cols=95  Identities=15%  Similarity=0.155  Sum_probs=74.4

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++. +.   .++++|.+ .|++.+.++    |+   +.......+ .+|++++||+|+|..+
T Consensus        37 ~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~fD~V~~~~~  112 (256)
T 1nkv_A           37 GTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA-GYVANEKCDVAACVGA  112 (256)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT-TCCCSSCEEEEEEESC
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH-hCCcCCCCCEEEECCC
Confidence            469999999999999999875 33   46788888 888887665    32   333332233 3555799999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ++|+++   ...+|.|+.|+|||||++++.+
T Consensus       113 ~~~~~~---~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          113 TWIAGG---FAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             GGGTSS---SHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hHhcCC---HHHHHHHHHHHcCCCeEEEEec
Confidence            998864   4789999999999999999986

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.45  E-value=1.3e-13  Score=123.10  Aligned_cols=98  Identities=16%  Similarity=0.154  Sum_probs=79.1

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeeccccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~  297 (363)
                      +..+|||+|||+|.++..|++.+   ..++++|.+ .+++.+.++.......|.....+|++ ++||+|++..+++|+.+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~  108 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD  108 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSC
T ss_pred             CCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCC
Confidence            45699999999999999999885   357888888 89998888764223333322237888 99999999999999864


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                         ...+|.++.|+|||||++++...
T Consensus       109 ---~~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A          109 ---PWAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             ---HHHHHHHTGGGEEEEEEEEEEEE
T ss_pred             ---HHHHHHHHHHHcCCCCEEEEEeC
Confidence               57899999999999999999853

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.45  E-value=1.6e-13  Score=124.38  Aligned_cols=116  Identities=13%  Similarity=0.111  Sum_probs=89.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCCCCC-CCcceeeeccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLLSDV  295 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~  295 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .+++.+.++..   +..+....+ .+|++ ++||+|+|..+++|+
T Consensus        54 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~  129 (242)
T 3l8d_A           54 EAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLS-SLPFENEQFEAIMAINSLEWT  129 (242)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTT-BCSSCTTCEEEEEEESCTTSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchh-cCCCCCCCccEEEEcChHhhc
Confidence            45999999999999999998865   46788888 89999988842   233332233 47888 999999999999998


Q ss_pred             cccCCHHHHHHHHhHhccCCeEEEEEcCH----------------------HHHHHHHHHHHhCCceeee
Q 017983          296 TQRCDIADVAVEMDRILRPGGYVLVQDTL----------------------EMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       296 ~~~~~~~~~L~Em~RVLRPGG~lii~D~~----------------------~~~~~i~~l~~~l~W~~~~  343 (363)
                      +   +...+|.++.|+|||||+++|.+..                      .....+.+++....++...
T Consensus       130 ~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  196 (242)
T 3l8d_A          130 E---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD  196 (242)
T ss_dssp             S---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred             c---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence            5   4578999999999999999998621                      1124577777777776543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.45  E-value=1.6e-13  Score=127.04  Aligned_cols=95  Identities=23%  Similarity=0.291  Sum_probs=75.9

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|++. +.   .|+++|.+ .+++.+.++    |+   +.......+ .+||+ ++||+|++..
T Consensus        62 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~  137 (273)
T 3bus_A           62 GDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAM-DLPFEDASFDAVWALE  137 (273)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCSCTTCEEEEEEES
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccc-cCCCCCCCccEEEEec
Confidence            469999999999999999874 33   57788888 788877765    32   333332222 47898 9999999999


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +++|+++   ...+|.|+.|+|||||++++.+
T Consensus       138 ~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          138 SLHHMPD---RGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             CTTTSSC---HHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhhCCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence            9999864   5789999999999999999986

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.44  E-value=6.1e-14  Score=138.86  Aligned_cols=139  Identities=6%  Similarity=0.087  Sum_probs=100.9

Q ss_pred             cccchhHHHHHHH---hhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceee---
Q 017983          196 NKDTTHWYALVSD---VYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGM---  268 (363)
Q Consensus       196 ~~~~~~W~~~~~~---~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~---  268 (363)
                      ...+..|......   ..+..+.+.  +..+|||+|||+|.++..|++.+.   .++++|.+ +|++.+.++|+...   
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~  156 (416)
T 4e2x_A           82 SSGSSVMREHFAMLARDFLATELTG--PDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDF  156 (416)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHTTTCS--SSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSC
T ss_pred             CcCCHHHHHHHHHHHHHHHHHhCCC--CCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceee
Confidence            3455566655443   122333333  346999999999999999998865   57788988 89999999976221   


Q ss_pred             e-ccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH--------------------H
Q 017983          269 Y-HDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE--------------------M  326 (363)
Q Consensus       269 ~-~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~--------------------~  326 (363)
                      + .+.. ..+||+ ++||+|++..+|+|++   ++..+|.|+.|+|||||++++.....                    .
T Consensus       157 ~~~~~~-~~l~~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s  232 (416)
T 4e2x_A          157 FEKATA-DDVRRTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFS  232 (416)
T ss_dssp             CSHHHH-HHHHHHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECC
T ss_pred             echhhH-hhcccCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCC
Confidence            1 1212 236788 9999999999999996   46889999999999999999975320                    1


Q ss_pred             HHHHHHHHHhCCceeee
Q 017983          327 INKLKPVLHSLQWSTNI  343 (363)
Q Consensus       327 ~~~i~~l~~~l~W~~~~  343 (363)
                      ...+.+++.+-.++...
T Consensus       233 ~~~l~~ll~~aGf~~~~  249 (416)
T 4e2x_A          233 ATSVQGMAQRCGFELVD  249 (416)
T ss_dssp             HHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHcCCEEEE
Confidence            35677788777776543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.44  E-value=3e-13  Score=125.45  Aligned_cols=97  Identities=19%  Similarity=0.236  Sum_probs=77.1

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      +..+|||+|||+|.++..|++.+.  ..|+++|.+ .+++.+.++    |+   +.++....+ .+|++ ++||+|+|..
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~i~~~~  122 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD-DLPFRNEELDLIWSEG  122 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCCTTCEEEEEESS
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChh-hCCCCCCCEEEEEEcC
Confidence            346999999999999999998743  246788888 788887766    22   333333333 47888 9999999999


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +++|+    +...+|.++.|+|||||++++.+.
T Consensus       123 ~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          123 AIYNI----GFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             CGGGT----CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             Cceec----CHHHHHHHHHHHcCCCCEEEEEEe
Confidence            99987    368899999999999999999863

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.43  E-value=6.5e-13  Score=121.62  Aligned_cols=95  Identities=25%  Similarity=0.199  Sum_probs=74.9

Q ss_pred             CCceEEEecccccHHHHHhhcC--CCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCC-CCcceeeecccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      +..+|||+|||+|.++..|++.  +..   ++++|.+ .|++.+.++.. +.......+ .+| + ++||+|++..+++|
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~---v~~~D~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~  107 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNV---ITGIDSDDDMLEKAADRLPNTNFGKADLA-TWK-PAQKADLLYANAVFQW  107 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTS---EEEEESCHHHHHHHHHHSTTSEEEECCTT-TCC-CSSCEEEEEEESCGGG
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCE---EEEEECCHHHHHHHHHhCCCcEEEECChh-hcC-ccCCcCEEEEeCchhh
Confidence            3469999999999999999875  433   5677888 89999887732 222332233 356 6 99999999999999


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ++   +...+|.|+.|+|||||++++.+
T Consensus       108 ~~---~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          108 VP---DHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             ST---THHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CC---CHHHHHHHHHHhcCCCeEEEEEe
Confidence            85   46889999999999999999985

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.43  E-value=2.4e-13  Score=122.07  Aligned_cols=99  Identities=16%  Similarity=0.306  Sum_probs=78.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c-------eeeeccccccCCCCC-CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-------IGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l-------~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .+++.+.++.    +       +.......+ .+|++ ++||+|+
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~  106 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS-SLSFHDSSFDFAV  106 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTT-SCCSCTTCEEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccc-ccCCCCCceeEEE
Confidence            45999999999999999998864   47788888 8888888753    2       222322222 47888 9999999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +..+++|+++......+|.++.|+|||||++++.+.
T Consensus       107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            999999997654455899999999999999999853

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.43  E-value=1.7e-13  Score=121.82  Aligned_cols=97  Identities=18%  Similarity=0.245  Sum_probs=77.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc--eeeeccccccCCCCC-CCcceeeecccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT  296 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~  296 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .+++.+.++|.  +..+....+. + ++ ++||+|+|..+++|++
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~-~-~~~~~~D~v~~~~~l~~~~  121 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFD-W-TPDRQWDAVFFAHWLAHVP  121 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTS-C-CCSSCEEEEEEESCGGGSC
T ss_pred             CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEeccccc-C-CCCCceeEEEEechhhcCC
Confidence            35999999999999999988754   46788888 89999988773  3333322222 3 67 9999999999999987


Q ss_pred             ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          297 QRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       297 ~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +. .+..+|.++.|+|||||.+++.+.
T Consensus       122 ~~-~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          122 DD-RFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             HH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HH-HHHHHHHHHHHHcCCCeEEEEEeC
Confidence            53 357899999999999999999864

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.43  E-value=2.5e-13  Score=124.47  Aligned_cols=95  Identities=20%  Similarity=0.251  Sum_probs=76.8

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-----ceeeeccccccCCCCC-CCcceeeecccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----LIGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-----l~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      +..+|||+|||+|.++..|++.+.   .++++|.+ .|++.+.++.     -+.......+ .+|++ ++||+|++..++
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADAR-AIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTT-SCCSCTTCEEEEEEESCG
T ss_pred             CCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEcccc-cCCCCCCCeeEEEECCch
Confidence            346999999999999999998754   47788888 8999888772     1333332233 47888 999999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +|++   +...+|.|+.|+|||||++++.
T Consensus       115 ~~~~---~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          115 HLVP---DWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             GGCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence            9986   3678999999999999999986

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.43  E-value=1.5e-13  Score=129.80  Aligned_cols=99  Identities=12%  Similarity=0.226  Sum_probs=70.6

Q ss_pred             CCceEEEecccccHHHHH----hhcC--CCeEEEEeecCCc-chHHHHHhc-----Cc--eee-e-ccccccC-----CC
Q 017983          220 SVRNVMDMNASYGGFAAA----LIDQ--PLWVMNVVPIDAP-DTLSIIFDR-----GL--IGM-Y-HDWCESF-----NT  278 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~----L~~~--~v~v~~v~~~d~s-~~L~~a~~R-----gl--~~~-~-~d~~e~~-----lp  278 (363)
                      +..+|||+|||+|.++..    ++..  .+. ..++++|.| +|++.+.++     ++  +.. + ....+..     .|
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~-v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCce-eeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            346899999999976543    3332  232 245888998 899988876     22  111 1 1111111     13


Q ss_pred             CC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          279 YP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       279 fp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |+ ++||+|+|+.+|+|+++   +..+|.||.|+|||||++++..
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCceeEEEEeeeeeecCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence            77 99999999999999874   6889999999999999999974

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=2.8e-13  Score=126.60  Aligned_cols=95  Identities=14%  Similarity=0.146  Sum_probs=76.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC--ceeeeccccccCCCCCCCcceeeecccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG--LIGMYHDWCESFNTYPRTYDLLHSSFLLSDVT  296 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg--l~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~  296 (363)
                      +..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++.  +.....| .+ .+|++++||+|++..+++|+.
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d-~~-~~~~~~~fD~v~~~~~l~~~~  131 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVAD-AR-NFRVDKPLDAVFSNAMLHWVK  131 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECC-TT-TCCCSSCEEEEEEESCGGGCS
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECC-hh-hCCcCCCcCEEEEcchhhhCc
Confidence            346999999999999999998554   46788888 8999988773  2222333 33 377779999999999999986


Q ss_pred             ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          297 QRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       297 ~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                         +...+|.|+.|+|||||++++..
T Consensus       132 ---d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          132 ---EPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             ---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---CHHHHHHHHHHhcCCCcEEEEEe
Confidence               46789999999999999999974

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.43  E-value=2e-13  Score=125.13  Aligned_cols=95  Identities=18%  Similarity=0.240  Sum_probs=76.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++....  .|+++|.+ .+++.+.++    |+   +..+....+ .+|++ ++||+|+|..+
T Consensus        47 ~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~  123 (257)
T 3f4k_A           47 DAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD-NLPFQNEELDLIWSEGA  123 (257)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCSSCTTCEEEEEEESC
T ss_pred             CCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChh-hCCCCCCCEEEEEecCh
Confidence            459999999999999999886421  57888888 788877665    32   333332233 47888 99999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ++|+    +...+|.++.|+|||||++++.+
T Consensus       124 l~~~----~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          124 IYNI----GFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             SCCC----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             Hhhc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence            9987    36789999999999999999987

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.42  E-value=5.6e-13  Score=118.82  Aligned_cols=95  Identities=24%  Similarity=0.384  Sum_probs=75.3

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-ceeeeccccccCCCCC-CCcceeeecccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-LIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT  296 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-l~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~  296 (363)
                      +..+|||+|||+|.++..|   +.  ..++++|.+ .|++.+.++. -+..+....+ .+|++ ++||+|++..+++|++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~~  109 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGE-ALPFPGESFDVVLLFTTLEFVE  109 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTT-SCCSCSSCEEEEEEESCTTTCS
T ss_pred             CCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccc-cCCCCCCcEEEEEEcChhhhcC
Confidence            3469999999999999888   32  146788988 8999988873 1222332233 47888 8999999999999986


Q ss_pred             ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          297 QRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       297 ~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                         +...+|.|+.|+|||||.+++.+.
T Consensus       110 ---~~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A          110 ---DVERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             ---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---CHHHHHHHHHHHcCCCCEEEEEec
Confidence               468899999999999999999864

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.42  E-value=3.5e-13  Score=129.48  Aligned_cols=103  Identities=15%  Similarity=0.169  Sum_probs=74.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-e-----------eeecccc------cc-CCCCC
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-I-----------GMYHDWC------ES-FNTYP  280 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~-----------~~~~d~~------e~-~lpfp  280 (363)
                      ..+|||+|||+|+.+..++..+..  .|+++|.| .|++.|.+|.. .           ......+      +. ..+++
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            468999999999866555554422  47889999 89999988732 0           0111111      11 12577


Q ss_pred             -CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983          281 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       281 -~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~  325 (363)
                       ++||+|.|..+++|.-+..+...+|.|+.|+|||||+++++....
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence             999999999999875444467899999999999999999987543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.42  E-value=7.3e-13  Score=118.03  Aligned_cols=116  Identities=21%  Similarity=0.270  Sum_probs=87.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeecccccc--CCCCC--CCcceeeeccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCES--FNTYP--RTYDLLHSSFLLSDV  295 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~--~lpfp--~sFDlVh~~~~l~~~  295 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .+++.+.+++.+.......+.  ..+++  .+||+|+|..+++ .
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~  128 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H  128 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-h
Confidence            37999999999999999998865   46788888 899999998643322211111  12554  5699999999998 3


Q ss_pred             cccCCHHHHHHHHhHhccCCeEEEEEcCHH--------------------------------HHHHHHHHHHhCCceeee
Q 017983          296 TQRCDIADVAVEMDRILRPGGYVLVQDTLE--------------------------------MINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       296 ~~~~~~~~~L~Em~RVLRPGG~lii~D~~~--------------------------------~~~~i~~l~~~l~W~~~~  343 (363)
                      .   ++..+|.++.|+|||||++++.+...                                ..+.+.++++.-.++...
T Consensus       129 ~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  205 (227)
T 3e8s_A          129 Q---DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS  205 (227)
T ss_dssp             S---CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred             h---hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence            3   45789999999999999999986311                                357788888887777654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.42  E-value=2.5e-13  Score=127.20  Aligned_cols=99  Identities=14%  Similarity=0.248  Sum_probs=78.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c------ee-eeccccccCCC---CC-CCcc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L------IG-MYHDWCESFNT---YP-RTYD  284 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l------~~-~~~d~~e~~lp---fp-~sFD  284 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++.    .      +. ...++ . .+|   |+ ++||
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~-~-~~~~~~~~~~~fD  132 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW-L-TLDKDVPAGDGFD  132 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG-G-GHHHHSCCTTCEE
T ss_pred             CCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh-h-hCccccccCCCeE
Confidence            46999999999999999999865   57888988 8998887642    1      11 12222 1 255   77 9999


Q ss_pred             eeeec-cccccccc----cCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          285 LLHSS-FLLSDVTQ----RCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       285 lVh~~-~~l~~~~~----~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      +|+|. .+|+|+.+    ......+|.++.|+|||||++++....
T Consensus       133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            99998 89999976    334788999999999999999998653

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.42  E-value=5.2e-13  Score=120.88  Aligned_cols=98  Identities=21%  Similarity=0.267  Sum_probs=78.8

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCCCCC-CCcceeeecccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      +..+|||+|||+|.++..|++.+..  .++++|.+ .+++.+.++..   +.......+ .++++ ++||+|++..+++|
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~  119 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLD-KLHLPQDSFDLAYSSLALHY  119 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGG-GCCCCTTCEEEEEEESCGGG
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChh-hccCCCCCceEEEEeccccc
Confidence            3469999999999999999987642  46788888 89999988853   233332233 37788 99999999999999


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +.   +...+|.++.|+|||||++++.+.
T Consensus       120 ~~---~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          120 VE---DVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             CS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cc---hHHHHHHHHHHhcCcCcEEEEEeC
Confidence            85   468899999999999999999864

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.42  E-value=2.3e-13  Score=127.44  Aligned_cols=97  Identities=19%  Similarity=0.197  Sum_probs=77.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .|++.+.++    |+   +..+....+...+++ ++||+|+|..+
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  145 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV  145 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred             CCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence            36999999999999999998864   46778888 889888776    22   333333334333377 99999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++|+++   ...+|.|+.|+|||||++++.+.
T Consensus       146 l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          146 LEWVAD---PRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             GGGCSC---HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhcccC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence            999864   57899999999999999999864

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.42  E-value=1.9e-13  Score=124.85  Aligned_cols=120  Identities=17%  Similarity=0.208  Sum_probs=90.4

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------eeeeccccccCCCCC-CCcceeeeccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      +..+|||+|||+|.++..|+....  ..++++|.+ .|++.+.++..      +..+....+ .++++ ++||+|++..+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~  155 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ-DFTPEPDSYDVIWIQWV  155 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGG-GCCCCSSCEEEEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChh-hcCCCCCCEEEEEEcch
Confidence            357999999999999999988752  257888988 89998887742      223322223 36777 89999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCHH---------------HHHHHHHHHHhCCceeee
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE---------------MINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~---------------~~~~i~~l~~~l~W~~~~  343 (363)
                      ++|+++. ....+|.++.|+|||||++++.+...               ...++.+++....++...
T Consensus       156 l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  221 (241)
T 2ex4_A          156 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA  221 (241)
T ss_dssp             GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred             hhhCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEE
Confidence            9998753 34689999999999999999976311               356777788777776543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.42  E-value=2.8e-13  Score=122.66  Aligned_cols=100  Identities=17%  Similarity=0.243  Sum_probs=76.4

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----eeeeccccccCCCCCCCcceeeecccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYPRTYDLLHSSFLLSD  294 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~~~~~d~~e~~lpfp~sFDlVh~~~~l~~  294 (363)
                      +..+|||+|||+|.++..|++... ...++++|.+ .+++.+.++..    +..+....+ .+|++++||+|+|..+++|
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~fD~v~~~~~l~~  121 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYS-KYDFEEKYDMVVSALSIHH  121 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTT-TCCCCSCEEEEEEESCGGG
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchh-ccCCCCCceEEEEeCcccc
Confidence            447999999999999999987521 1246788888 89998888732    223332222 3566699999999999999


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +++. ....+|.|+.|+|||||++++.+
T Consensus       122 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          122 LEDE-DKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             SCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCHH-HHHHHHHHHHHhcCCCcEEEEEE
Confidence            8643 23469999999999999999987

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.42  E-value=6e-13  Score=124.47  Aligned_cols=103  Identities=14%  Similarity=0.158  Sum_probs=77.5

Q ss_pred             hhccccCCCCCceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCC
Q 017983          211 VGGLAINWSSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPR  281 (363)
Q Consensus       211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~  281 (363)
                      ++.+.+.+  ..+|||+|||+|.++..|++ .+.   .|+++|.+ ++++.+.++    |+   +.+.....+   .+|+
T Consensus        57 ~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~~~  128 (287)
T 1kpg_A           57 LGKLGLQP--GMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE---QFDE  128 (287)
T ss_dssp             HTTTTCCT--TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG---GCCC
T ss_pred             HHHcCCCC--cCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh---hCCC
Confidence            33444443  45999999999999999984 444   57888888 888888776    32   223322222   2449


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +||+|++..+|+|+.. .+...+|.|+.|+|||||++++.+
T Consensus       129 ~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          129 PVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             CCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CeeEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999999999999853 357889999999999999999976

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.41  E-value=6.9e-14  Score=130.57  Aligned_cols=101  Identities=8%  Similarity=0.026  Sum_probs=73.8

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----------------------------------
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----------------------------------  264 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----------------------------------  264 (363)
                      +..+|||+|||+|.++..++..++  -.|+++|.+ +|++.|.++.                                  
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            346899999999988877776654  368899999 8998876531                                  


Q ss_pred             -cee-eeccccccCCCC---C-CCcceeeeccccccc-cccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          265 -LIG-MYHDWCESFNTY---P-RTYDLLHSSFLLSDV-TQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       265 -l~~-~~~d~~e~~lpf---p-~sFDlVh~~~~l~~~-~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                       .+. ++........|+   . .+||+|+|+.+|+|+ ++..++..+|.+|.|+|||||+|++++
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence             010 222112222343   3 799999999999986 333456789999999999999999995

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.41  E-value=2.9e-13  Score=120.89  Aligned_cols=117  Identities=18%  Similarity=0.189  Sum_probs=89.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc-CceeeeccccccCCCCCCCcceeeecccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR-GLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R-gl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~  298 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .+++.+.++ +......+. + .++.+++||+|+|..+++|++. 
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~-~-~~~~~~~fD~v~~~~~l~~~~~-  117 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLF-H-QLDAIDAYDAVWAHACLLHVPR-  117 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCG-G-GCCCCSCEEEEEECSCGGGSCH-
T ss_pred             CCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeee-c-cCCCCCcEEEEEecCchhhcCH-
Confidence            46999999999999999998864   46788888 899988887 432223332 2 3563399999999999999862 


Q ss_pred             CCHHHHHHHHhHhccCCeEEEEEcCH---------------HHHHHHHHHHHhCC-ceeee
Q 017983          299 CDIADVAVEMDRILRPGGYVLVQDTL---------------EMINKLKPVLHSLQ-WSTNI  343 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPGG~lii~D~~---------------~~~~~i~~l~~~l~-W~~~~  343 (363)
                      .++..+|.|+.|+|||||++++....               ...+.+.++++.-. ++...
T Consensus       118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~  178 (211)
T 3e23_A          118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVA  178 (211)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEE
Confidence            34678999999999999999998421               13567788887776 76544

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.41  E-value=4.6e-13  Score=126.73  Aligned_cols=105  Identities=10%  Similarity=0.087  Sum_probs=79.7

Q ss_pred             hhccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCC
Q 017983          211 VGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPR  281 (363)
Q Consensus       211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~  281 (363)
                      +..+.+.+  ..+|||+|||+|.++..|++. +.   .|+++|.+ ++++.+.++    |+   +.+.....+   .+++
T Consensus        65 ~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~  136 (302)
T 3hem_A           65 LDKLNLEP--GMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDE  136 (302)
T ss_dssp             HHTTCCCT--TCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCC
T ss_pred             HHHcCCCC--cCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH---HcCC
Confidence            33444443  459999999999999999886 53   47788888 889888776    32   223322222   2379


Q ss_pred             Ccceeeecccccccccc------CCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          282 TYDLLHSSFLLSDVTQR------CDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~------~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +||+|++..+++|++++      .+...+|.++.|+|||||++++.+.
T Consensus       137 ~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          137 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            99999999999999765      4567899999999999999999863

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.41  E-value=4.8e-13  Score=120.12  Aligned_cols=102  Identities=13%  Similarity=0.254  Sum_probs=77.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-----------ceeeeccccccCCCCC-CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----------LIGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-----------l~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      ..+|||+|||+|.++..|++.+.. ..++++|.+ .+++.+.++-           -+..+.... ..++++ ++||+|+
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDAAT  107 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCEEe
Confidence            469999999999999999986421 257788888 8998887762           122332222 245666 8999999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~  325 (363)
                      |..+++|+++. .+..+|.++.|+|||||.+++.+...
T Consensus       108 ~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~li~~~~~~  144 (217)
T 3jwh_A          108 VIEVIEHLDLS-RLGAFERVLFEFAQPKIVIVTTPNIE  144 (217)
T ss_dssp             EESCGGGCCHH-HHHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred             eHHHHHcCCHH-HHHHHHHHHHHHcCCCEEEEEccCcc
Confidence            99999999643 45789999999999999888876543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.40  E-value=6.9e-13  Score=126.41  Aligned_cols=95  Identities=13%  Similarity=0.047  Sum_probs=76.1

Q ss_pred             CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      +..+|||+|||+|.++..|++. +.   .|+++|.+ .+++.|.++    |+   +..+....+ .+||+ ++||+|++.
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~  192 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML-DTPFDKGAVTASWNN  192 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCCTTCEEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-cCCCCCCCEeEEEEC
Confidence            3469999999999999999886 43   46778888 788877765    32   333333233 47898 999999999


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      .+++|+.    ...+|.|+.|+|||||++++.+
T Consensus       193 ~~l~~~~----~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          193 ESTMYVD----LHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             SCGGGSC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CchhhCC----HHHHHHHHHHHcCCCcEEEEEE
Confidence            9999983    6889999999999999999975

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.40  E-value=2.6e-13  Score=122.60  Aligned_cols=98  Identities=14%  Similarity=0.184  Sum_probs=76.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCCCCcceeeecc-ccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYPRTYDLLHSSF-LLSDVTQ  297 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp~sFDlVh~~~-~l~~~~~  297 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .|++.+.++.. +.......+ .++++++||+|+|.. +++|+.+
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~D~v~~~~~~~~~~~~  116 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMR-DFRLGRKFSAVVSMFSSVGYLKT  116 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTT-TCCCSSCEEEEEECTTGGGGCCS
T ss_pred             CCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHH-HcccCCCCcEEEEcCchHhhcCC
Confidence            46999999999999999988643   57788888 89999988742 222322222 255568999999755 8999876


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ..+...+|.++.|+|||||++++.+
T Consensus       117 ~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          117 TEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            5567899999999999999999975

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.40  E-value=4.8e-13  Score=125.86  Aligned_cols=101  Identities=14%  Similarity=0.101  Sum_probs=77.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c-eeeeccccccCCCCCCCcceeeeccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l-~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      +..+|||+|||+|.++..|++.-.....|+++|.+ .+++.+.++-    . +......++ .+|++++||+|+|..+++
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~~~~~fD~v~~~~~l~  100 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EIELNDKYDIAICHAFLL  100 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT-TCCCSSCEEEEEEESCGG
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh-hcCcCCCeeEEEECChhh
Confidence            35699999999999999998861111246778888 7888777652    1 333333333 377789999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      |+++   ...+|.++.|+|||||++++.+..
T Consensus       101 ~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A          101 HMTT---PETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             GCSS---HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCC---HHHHHHHHHHHcCCCCEEEEEecc
Confidence            9864   578999999999999999998754

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.39  E-value=1.8e-12  Score=112.51  Aligned_cols=118  Identities=11%  Similarity=0.072  Sum_probs=87.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCC-CCcceeeec-ccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSS-FLLSDVT  296 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~-~~l~~~~  296 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .+++.+.++.. +..+..... .++++ ++||+|++. .+++|+.
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~~D~i~~~~~~~~~~~  122 (195)
T 3cgg_A           47 GAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLS-VDQISETDFDLIVSAGNVMGFLA  122 (195)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-TSCCCCCCEEEEEECCCCGGGSC
T ss_pred             CCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEcccc-cCCCCCCceeEEEECCcHHhhcC
Confidence            46999999999999999998754   46788888 78888887742 222322222 36787 999999998 7888774


Q ss_pred             ccCCHHHHHHHHhHhccCCeEEEEEcCHH---HHHHHHHHHHhCCceeee
Q 017983          297 QRCDIADVAVEMDRILRPGGYVLVQDTLE---MINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       297 ~~~~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~l~~~l~W~~~~  343 (363)
                      . .+...+|.++.|+|||||.+++.....   ....+.++++...++...
T Consensus       123 ~-~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  171 (195)
T 3cgg_A          123 E-DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELEN  171 (195)
T ss_dssp             H-HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEE
T ss_pred             h-HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEee
Confidence            2 346789999999999999999975432   356677777666666543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.39  E-value=6.8e-13  Score=117.50  Aligned_cols=119  Identities=13%  Similarity=0.132  Sum_probs=85.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----eeeeccccccCCCCC-CCcceeeecccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      ..+|||+|||+|.++..|++.+..  .++++|.+ .+++.+.++..    +........ .++++ ++||+|++..+++|
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~-~~~~~~~~fD~v~~~~~~~~  119 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR-KLDFPSASFDVVLEKGTLDA  119 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTT-SCCSCSSCEEEEEEESHHHH
T ss_pred             CCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchh-cCCCCCCcccEEEECcchhh
Confidence            459999999999999999987642  57788888 88888887631    222322222 36888 99999999998877


Q ss_pred             cc------------ccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHH--HhCCceeee
Q 017983          295 VT------------QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVL--HSLQWSTNI  343 (363)
Q Consensus       295 ~~------------~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~--~~l~W~~~~  343 (363)
                      +.            +..+...+|.|+.|+|||||.+++.+....- ....+.  ....|....
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~  181 (215)
T 2pxx_A          120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH-FRTRHYAQAYYGWSLRH  181 (215)
T ss_dssp             HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH-HHHHHHCCGGGCEEEEE
T ss_pred             hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH-HHHHHHhccccCcEEEE
Confidence            64            1234678999999999999999999865421 122333  334676543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.39  E-value=6.1e-13  Score=123.25  Aligned_cols=98  Identities=16%  Similarity=0.285  Sum_probs=77.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeecccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~  298 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .|++.+.++..........+ .+|++ ++||+|++..++.|+.. 
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~~~~~~~-  129 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAE-DLPFPSGAFEAVLALGDVLSYVE-  129 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTT-SCCSCTTCEEEEEECSSHHHHCS-
T ss_pred             CCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcHH-HCCCCCCCEEEEEEcchhhhccc-
Confidence            46999999999999999998764   47788888 89999988864112222222 47888 99999999987877643 


Q ss_pred             CCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          299 CDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                       +...+|.|+.|+|||||.+++....
T Consensus       130 -~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          130 -NKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             -CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             -cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence             3789999999999999999998654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.39  E-value=2e-12  Score=117.48  Aligned_cols=117  Identities=13%  Similarity=0.086  Sum_probs=88.9

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-------eeeeccccccCCCCCCCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-------IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-------~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      .+|||+|||+|.++..|++.+.   .|+++|.+ .+++.+.++..       +.++....+. ++.+++||+|++..+|+
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~l~  143 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WRPTELFDLIFDYVFFC  143 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CCCSSCEEEEEEESSTT
T ss_pred             CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CCCCCCeeEEEEChhhh
Confidence            4999999999999999988653   47888988 88888877632       3333322222 34338999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcCHH-----------HHHHHHHHHHhCCceeee
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-----------MINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-----------~~~~i~~l~~~l~W~~~~  343 (363)
                      |++ ..+...+|.++.|+|||||++++.+...           ..+.+.+++..-.|+...
T Consensus       144 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  203 (235)
T 3lcc_A          144 AIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVS  203 (235)
T ss_dssp             TSC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred             cCC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEE
Confidence            986 3457889999999999999999865311           256788888888887644

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.38  E-value=4.6e-13  Score=118.74  Aligned_cols=98  Identities=13%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             CceEEEecccccHH-HHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGF-AAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~f-aa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.+ ...++..+.   .++++|.+ .|++.+.++    +. +.......+ .+|++ ++||+|+|..++
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIR-KLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTT-SCCSCTTCEEEEEECSCG
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchh-hCCCCCCceeEEEEcChH
Confidence            46999999999987 445555554   46788888 888887765    21 222332233 37888 999999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +|++ ..+...++.|+.|+|||||++++.+.
T Consensus       100 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A          100 FHMR-KNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             GGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9984 23578899999999999999999864

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.38  E-value=6.3e-13  Score=124.63  Aligned_cols=117  Identities=15%  Similarity=-0.009  Sum_probs=85.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----------------------eeeeccccccC
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----------------------IGMYHDWCESF  276 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----------------------~~~~~d~~e~~  276 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.| .|++.|+++.-                       +..+..... .
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~-~  144 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF-D  144 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT-T
T ss_pred             CCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc-c
Confidence            46999999999999999999875   47888999 89998876531                       222222222 3


Q ss_pred             CCCC--CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH------------HHHHHHHHHHHhCCceee
Q 017983          277 NTYP--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       277 lpfp--~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~l~~~l~W~~~  342 (363)
                      ++++  ++||+|++..+|+|++. .....++.|+.|+|||||++++....            -..+++.++... .|++.
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~-~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~  222 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINP-GDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ  222 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhhCCH-HHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence            5664  89999999999999864 45678999999999999999643210            123567777765 37654


Q ss_pred             e
Q 017983          343 I  343 (363)
Q Consensus       343 ~  343 (363)
                      .
T Consensus       223 ~  223 (252)
T 2gb4_A          223 C  223 (252)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.37  E-value=3.7e-13  Score=123.01  Aligned_cols=100  Identities=15%  Similarity=0.172  Sum_probs=73.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eeeeccccccCC--CCC-CCcceeee-cc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFN--TYP-RTYDLLHS-SF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~~l--pfp-~sFDlVh~-~~  290 (363)
                      ..+|||+|||+|.++..|++.+.  ..|+++|.+ .|++.|.++..     +..+....+. +  ||+ ++||+|++ .+
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED-VAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH-HGGGSCTTCEEEEEECCC
T ss_pred             CCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHH-hhcccCCCceEEEEECCc
Confidence            46999999999999999987653  268889999 89999888642     2333322232 4  788 99999999 55


Q ss_pred             ccccccc--cCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          291 LLSDVTQ--RCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       291 ~l~~~~~--~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      .+ +.+.  ....+.++.|+.|+|||||++++.+..
T Consensus       138 ~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          138 PL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             cc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            54 3222  223457899999999999999987643

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.37  E-value=2.2e-12  Score=112.82  Aligned_cols=115  Identities=16%  Similarity=0.109  Sum_probs=77.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.|.++    |+  +..+++..+....++ ++||+|+++..+
T Consensus        23 ~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~   99 (185)
T 3mti_A           23 ESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY   99 (185)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence            35999999999999999998743   46788888 888887765    32  334444333322356 899999887322


Q ss_pred             ccc------cccCCHHHHHHHHhHhccCCeEEEEEcCH------HHHHHHHHHHHhCC
Q 017983          293 SDV------TQRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSLQ  338 (363)
Q Consensus       293 ~~~------~~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l~  338 (363)
                      .+.      ........+|.|+.|+|||||++++..-.      +....+.+.+..+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~  157 (185)
T 3mti_A          100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLD  157 (185)
T ss_dssp             ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSC
T ss_pred             CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence            211      01123457899999999999999997532      23455666665554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.37  E-value=9.2e-13  Score=122.32  Aligned_cols=98  Identities=15%  Similarity=0.324  Sum_probs=75.9

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      +..+|||+|||+|.++..|++... ...++++|.+ .+++.+.++    |+  +.......+ .+|++ ++||+|++..+
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKNVKFLQANIF-SLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGG-GCCSCTTCEEEEEEESC
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccc-cCCCCCCCeeEEEEech
Confidence            346999999999999999987521 1146777887 788877765    32  333332233 47888 99999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ++|+++   ...+|.++.|+|||||++++.+
T Consensus       115 l~~~~~---~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          115 LEHLQS---PEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             GGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhcCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence            999864   5789999999999999999975

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.36  E-value=5.8e-13  Score=125.25  Aligned_cols=120  Identities=16%  Similarity=0.115  Sum_probs=80.0

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------------------ee-------------
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------------------IG-------------  267 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------------------~~-------------  267 (363)
                      ...+|||+|||+|.++..++..+..  .|+++|.+ .|++.|.++-.                  .+             
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCC--eEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            3469999999999965444432222  57888999 89987766310                  00             


Q ss_pred             -----eeccccccCCC-----CC-CCcceeeecccccccccc-CCHHHHHHHHhHhccCCeEEEEEcCH-----------
Q 017983          268 -----MYHDWCESFNT-----YP-RTYDLLHSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQDTL-----------  324 (363)
Q Consensus       268 -----~~~d~~e~~lp-----fp-~sFDlVh~~~~l~~~~~~-~~~~~~L~Em~RVLRPGG~lii~D~~-----------  324 (363)
                           ++....+..+|     ++ ++||+|+|..+|+|+... .++..+|.|+.|+|||||++++.+..           
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~  228 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR  228 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence                 11111222255     44 679999999999985421 24688999999999999999997411           


Q ss_pred             -----HHHHHHHHHHHhCCcee
Q 017983          325 -----EMINKLKPVLHSLQWST  341 (363)
Q Consensus       325 -----~~~~~i~~l~~~l~W~~  341 (363)
                           ...+.+.+++..-.++.
T Consensus       229 ~~~~~~~~~~l~~~l~~aGf~~  250 (289)
T 2g72_A          229 LTVVPVSEEEVREALVRSGYKV  250 (289)
T ss_dssp             EECCCCCHHHHHHHHHHTTEEE
T ss_pred             eeeccCCHHHHHHHHHHcCCeE
Confidence                 12466777776666654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.36  E-value=1.7e-12  Score=123.46  Aligned_cols=104  Identities=13%  Similarity=0.139  Sum_probs=78.3

Q ss_pred             hhccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCC
Q 017983          211 VGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPR  281 (363)
Q Consensus       211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~  281 (363)
                      ++.+.+.+  ..+|||+|||+|.++..|++. +.   .|+++|.+ ++++.+.++    |+   +.......+   .+|+
T Consensus        83 ~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~  154 (318)
T 2fk8_A           83 LDKLDLKP--GMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE---DFAE  154 (318)
T ss_dssp             HTTSCCCT--TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG---GCCC
T ss_pred             HHhcCCCC--cCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChH---HCCC
Confidence            33444443  459999999999999999876 54   57788888 889888776    32   333322222   2358


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +||+|++..+|+|++. .+...+|.|+.|+|||||++++.+.
T Consensus       155 ~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          155 PVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             CCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CcCEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999999999999853 3578899999999999999999763

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.36  E-value=8.1e-13  Score=121.83  Aligned_cols=98  Identities=14%  Similarity=0.142  Sum_probs=71.9

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eeee-ccccccCCCCC-CCcceeeec--
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMY-HDWCESFNTYP-RTYDLLHSS--  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~-~d~~e~~lpfp-~sFDlVh~~--  289 (363)
                      +..+|||||||+|.++.+|++...  -+++++|.+ .|++.|.++.-     +.++ .++-....+++ ++||.|+..  
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            346999999999999999988653  367888988 89999887642     2222 33322234678 999998753  


Q ss_pred             ---cccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          290 ---FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       290 ---~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                         ..+.|+.   +.+.++.|+.|||||||.|++.+
T Consensus       138 ~~~~~~~~~~---~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          138 PLSEETWHTH---QFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCBGGGTTTH---HHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ecccchhhhc---chhhhhhhhhheeCCCCEEEEEe
Confidence               3334443   35789999999999999999864

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.35  E-value=1.1e-12  Score=118.87  Aligned_cols=96  Identities=18%  Similarity=0.268  Sum_probs=75.4

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c-eeeeccccccCCCCCCCcceeeecc-cccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-IGMYHDWCESFNTYPRTYDLLHSSF-LLSD  294 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l-~~~~~d~~e~~lpfp~sFDlVh~~~-~l~~  294 (363)
                      .+|||+|||+|.++..|++.    ..++++|.+ .|++.+.++.    . +........ .++++++||+|++.. +++|
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~fD~v~~~~~~~~~  109 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMR-ELELPEPVDAITILCDSLNY  109 (243)
T ss_dssp             CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGG-GCCCSSCEEEEEECTTGGGG
T ss_pred             CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChh-hcCCCCCcCEEEEeCCchhh
Confidence            69999999999999999887    257888988 8898887762    1 222222222 256679999999986 9999


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +.+..+...+|.++.|+|||||.+++.-
T Consensus       110 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A          110 LQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             CCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            8665567889999999999999999853

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.35  E-value=1.3e-12  Score=123.85  Aligned_cols=97  Identities=12%  Similarity=0.062  Sum_probs=74.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCcee-eeccccccCC--C-C-CCCcceeeecccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG-MYHDWCESFN--T-Y-PRTYDLLHSSFLLSD  294 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~-~~~d~~e~~l--p-f-p~sFDlVh~~~~l~~  294 (363)
                      ..+|||+|||+|.++..|++++.   .|+++|.+ +|++.+.++.... +..++.....  + . +++||+|+|+.+++|
T Consensus        46 g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~  122 (261)
T 3iv6_A           46 GSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINR  122 (261)
T ss_dssp             TCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGG
T ss_pred             cCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHh
Confidence            46999999999999999998864   47888988 8999998875311 1122211111  1 1 379999999999999


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +... +...++.+|.|+| |||.++++-
T Consensus       123 ~~~~-~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          123 FTTE-EARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             SCHH-HHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             CCHH-HHHHHHHHHHHhC-cCcEEEEEe
Confidence            8543 4678999999999 999999984

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.35  E-value=6e-13  Score=131.25  Aligned_cols=118  Identities=16%  Similarity=0.193  Sum_probs=87.0

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc---------C-----ceeeeccccccCC------C
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---------G-----LIGMYHDWCESFN------T  278 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R---------g-----l~~~~~d~~e~~l------p  278 (363)
                      +..+|||+|||+|.++..|++.......|+++|.+ .|++.+.++         |     .+..+....+ .+      |
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~-~l~~~~~~~  161 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIE-NLATAEPEG  161 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTT-CGGGCBSCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHH-HhhhcccCC
Confidence            34699999999999998887641001247788888 899998876         4     2333332222 23      8


Q ss_pred             CC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-----------------------HHHHHHHHHH
Q 017983          279 YP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------------------EMINKLKPVL  334 (363)
Q Consensus       279 fp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------------------~~~~~i~~l~  334 (363)
                      |+ ++||+|++..+++|+++   ...+|.|+.|+|||||++++.+..                       -....+.+++
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  238 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTN---KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLV  238 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHH
T ss_pred             CCCCCEEEEEEccchhcCCC---HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHH
Confidence            98 99999999999999864   688999999999999999998521                       1126677777


Q ss_pred             HhCCcee
Q 017983          335 HSLQWST  341 (363)
Q Consensus       335 ~~l~W~~  341 (363)
                      ..-.++.
T Consensus       239 ~~aGF~~  245 (383)
T 4fsd_A          239 AEAGFRD  245 (383)
T ss_dssp             HHTTCCC
T ss_pred             HHCCCce
Confidence            7777753

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.35  E-value=7.5e-13  Score=125.67  Aligned_cols=101  Identities=16%  Similarity=0.198  Sum_probs=75.4

Q ss_pred             CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc--------------------------------
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL--------------------------------  265 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl--------------------------------  265 (363)
                      ...+|||+|||+|.++..|+.. +..  .|+++|.+ .|++.|.++..                                
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~--~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPS--RMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCS--EEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            3569999999999999999875 222  57888988 89998887621                                


Q ss_pred             --------------------------------eee-ecccccc---CCCCC-CCcceeeecccccccc---ccCCHHHHH
Q 017983          266 --------------------------------IGM-YHDWCES---FNTYP-RTYDLLHSSFLLSDVT---QRCDIADVA  305 (363)
Q Consensus       266 --------------------------------~~~-~~d~~e~---~lpfp-~sFDlVh~~~~l~~~~---~~~~~~~~L  305 (363)
                                                      +.. .+|+...   .++++ ++||+|+|..+++|++   ...++..++
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l  203 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF  203 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence                                            111 2222111   12466 9999999999998764   444678899


Q ss_pred             HHHhHhccCCeEEEEEc
Q 017983          306 VEMDRILRPGGYVLVQD  322 (363)
Q Consensus       306 ~Em~RVLRPGG~lii~D  322 (363)
                      .++.|+|||||++++..
T Consensus       204 ~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          204 RRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHhCCCcEEEEec
Confidence            99999999999999974

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.35  E-value=7.2e-13  Score=125.21  Aligned_cols=97  Identities=14%  Similarity=0.209  Sum_probs=73.6

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC---------ceeeeccccccCCCCCCCcceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG---------LIGMYHDWCESFNTYPRTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg---------l~~~~~d~~e~~lpfp~sFDlVh~~~~  291 (363)
                      .+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++.         -+.++....+ .+|++++||+|+|+..
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~fD~v~~~~~  159 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS-AFALDKRFGTVVISSG  159 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT-BCCCSCCEEEEEECHH
T ss_pred             CcEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh-cCCcCCCcCEEEECCc
Confidence            3899999999999999998864   46788888 8998887762         1333333233 2667799999997644


Q ss_pred             -cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 -LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 -l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                       ++|+ +..+...+|.++.|+|||||++++...
T Consensus       160 ~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          160 SINEL-DEADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             HHTTS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccC-CHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence             5544 434568899999999999999999864

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.34  E-value=2.9e-11  Score=107.59  Aligned_cols=116  Identities=11%  Similarity=0.097  Sum_probs=84.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++..|++... ...++++|.+ ++++.+.++    |+  +..+.......++...+||+|++...+.
T Consensus        41 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~  119 (204)
T 3e05_A           41 DLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG  119 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT
T ss_pred             CCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc
Confidence            46999999999999999987641 1246788888 788877765    22  3333322222233338899999987665


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhCCceeee
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~~  343 (363)
                            ++..++.++.|+|||||++++... .+....+.++++...|+...
T Consensus       120 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  164 (204)
T 3e05_A          120 ------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEV  164 (204)
T ss_dssp             ------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEE
T ss_pred             ------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeE
Confidence                  457899999999999999999864 45677788888888885443

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.33  E-value=1.2e-12  Score=122.06  Aligned_cols=101  Identities=16%  Similarity=0.175  Sum_probs=76.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCCCC-C-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTY-P-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~lpf-p-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|+..+..  .++++|.+ .+++.+.++.    +   +......++ .+|+ + ++||+|+|..
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           65 GDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-GRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT-TSCCCCSSCEEEEEEES
T ss_pred             CCeEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcc-ccccCCCCCcCEEEECc
Confidence            469999999999999888876531  47788888 8888887762    1   233332233 3577 5 8999999999


Q ss_pred             ccccc-cccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          291 LLSDV-TQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       291 ~l~~~-~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      +++|. .+..+...+|.++.|+|||||++++....
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            99873 23345688999999999999999998754

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.33  E-value=2.4e-12  Score=113.95  Aligned_cols=93  Identities=14%  Similarity=0.145  Sum_probs=72.0

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeeeccccccc
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDV  295 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~  295 (363)
                      +|||+|||+|.++..|++.+.   .++++|.+ .+++.+.++    +. +.......+ .++++ ++||+|++.  +.|+
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~--~~~~  105 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLA-DFDIVADAWEGIVSI--FCHL  105 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTT-TBSCCTTTCSEEEEE--CCCC
T ss_pred             CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChh-hcCCCcCCccEEEEE--hhcC
Confidence            999999999999999998764   57888988 888888776    22 233332222 36788 999999995  4555


Q ss_pred             cccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          296 TQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       296 ~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      . ..+...+|.++.|+|||||++++.+
T Consensus       106 ~-~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          106 P-SSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             C-HHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             C-HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2 3356889999999999999999985

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.33  E-value=3.6e-12  Score=114.18  Aligned_cols=99  Identities=20%  Similarity=0.272  Sum_probs=75.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-----ceeeeccccccCCCCC-CCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----LIGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-----l~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .+++.+.++.     .+..+..... .++++ ++||+|++..+++
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDAR-KLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTT-SCCSCTTCEEEEEEESCGG
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchh-cCCCCCCcEEEEEEcCchH
Confidence            46999999999999999998764   57888888 7888877652     1223322222 36788 8999999999854


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      +.. ..+...+|.++.|+|||||.+++.+..
T Consensus       115 ~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          115 HFE-PLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             GCC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hCC-HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            432 224678999999999999999998754

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.33  E-value=1.9e-12  Score=116.75  Aligned_cols=90  Identities=21%  Similarity=0.275  Sum_probs=74.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeecccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~  298 (363)
                      ..+|||+|||+|.++..|+..       +++|.+ .+++.+.++++.....+ .+ .+|++ ++||+|++..+++|+.  
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~~~~~d-~~-~~~~~~~~fD~v~~~~~l~~~~--  116 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGT-AE-NLPLKDESFDFALMVTTICFVD--  116 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECB-TT-BCCSCTTCEEEEEEESCGGGSS--
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCEEEEcc-cc-cCCCCCCCeeEEEEcchHhhcc--
Confidence            469999999999999999876       566777 89999998865333333 23 37888 8999999999999985  


Q ss_pred             CCHHHHHHHHhHhccCCeEEEEEc
Q 017983          299 CDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                       +...+|.++.|+|||||++++.+
T Consensus       117 -~~~~~l~~~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A          117 -DPERALKEAYRILKKGGYLIVGI  139 (219)
T ss_dssp             -CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CHHHHHHHHHHHcCCCcEEEEEE
Confidence             45789999999999999999985

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.33  E-value=6.1e-12  Score=112.57  Aligned_cols=116  Identities=17%  Similarity=0.154  Sum_probs=84.0

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCCC-CCcceeeecccccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~  298 (363)
                      +..+|||+|||+|.++..|..      .++++|.+..       .......| .+ .+|++ ++||+|+|..++++    
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~~------~v~~~D~s~~-------~~~~~~~d-~~-~~~~~~~~fD~v~~~~~l~~----  127 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIRN------PVHCFDLASL-------DPRVTVCD-MA-QVPLEDESVDVAVFCLSLMG----  127 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCCS------CEEEEESSCS-------STTEEESC-TT-SCSCCTTCEEEEEEESCCCS----
T ss_pred             CCCeEEEECCcCCHHHHHhhc------cEEEEeCCCC-------CceEEEec-cc-cCCCCCCCEeEEEEehhccc----
Confidence            346899999999999998842      2455565522       11112223 23 37888 99999999999963    


Q ss_pred             CCHHHHHHHHhHhccCCeEEEEEcCHH---HHHHHHHHHHhCCceeeee-----cceEEEEEec
Q 017983          299 CDIADVAVEMDRILRPGGYVLVQDTLE---MINKLKPVLHSLQWSTNIY-----HDQFLVGKKG  354 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~l~~~l~W~~~~~-----~~~~li~~K~  354 (363)
                      .+...+|.|+.|+|||||++++.+...   ....+.++++...++....     .-.+++++|.
T Consensus       128 ~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~  191 (215)
T 2zfu_A          128 TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKT  191 (215)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEEC
T ss_pred             cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEec
Confidence            357889999999999999999997654   4577888888888876544     2256777776

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.32  E-value=1.8e-12  Score=123.35  Aligned_cols=103  Identities=14%  Similarity=0.114  Sum_probs=77.0

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-------------ceeeeccccccCCC----CC-
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------------LIGMYHDWCESFNT----YP-  280 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-------------l~~~~~d~~e~~lp----fp-  280 (363)
                      +..+|||+|||+|.++..|++.+..  .++++|.+ .|++.+.++.             -+..+...++. ++    |+ 
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~  110 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRIN--KLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSK-ELLIDKFRD  110 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTT-SCSTTTCSS
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccc-cchhhhccc
Confidence            3469999999999999999875432  57888988 8998887762             12223333333 33    63 


Q ss_pred             --CCcceeeeccccccc-cccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983          281 --RTYDLLHSSFLLSDV-TQRCDIADVAVEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       281 --~sFDlVh~~~~l~~~-~~~~~~~~~L~Em~RVLRPGG~lii~D~~~  325 (363)
                        ++||+|+|..++++. .+..+...+|.++.|+|||||+++++....
T Consensus       111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence              599999999999887 444456789999999999999999987643

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.32  E-value=9.5e-12  Score=107.30  Aligned_cols=113  Identities=13%  Similarity=0.096  Sum_probs=81.2

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      +..+|||+|||+|.++..++... ....++++|.+ .+++.+.++    |+   + .++......++.. ++||+|++..
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~  102 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG  102 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence            34699999999999999998762 12357888988 788888765    32   3 3332222245555 8999999999


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhCCcee
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWST  341 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~  341 (363)
                      .++|       ..++.++.|+|||||++++.+. .+....+.++.+...++.
T Consensus       103 ~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~  147 (178)
T 3hm2_A          103 GLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTI  147 (178)
T ss_dssp             -TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEE
T ss_pred             cccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCee
Confidence            8886       3499999999999999999875 344556666666555543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.32  E-value=3.2e-12  Score=120.77  Aligned_cols=93  Identities=9%  Similarity=0.042  Sum_probs=72.0

Q ss_pred             CCceEEEecccccHHHHHhhc---CCCeEEEEeecCCc-chHHHHHhc-----C---ceeeeccccccCCCCC-------
Q 017983          220 SVRNVMDMNASYGGFAAALID---QPLWVMNVVPIDAP-DTLSIIFDR-----G---LIGMYHDWCESFNTYP-------  280 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~---~~v~v~~v~~~d~s-~~L~~a~~R-----g---l~~~~~d~~e~~lpfp-------  280 (363)
                      +..+|||+|||+|.++..|++   .+.   .|+++|.+ .|++.+.++     +   -+..+....+ .++++       
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~~  111 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD-DFKFLGADSVDK  111 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT-CCGGGCTTTTTS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH-hCCccccccccC
Confidence            457999999999999999994   333   46788888 889888775     1   1333332233 24543       


Q ss_pred             CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEE
Q 017983          281 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV  320 (363)
Q Consensus       281 ~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii  320 (363)
                      ++||+|+|..+++|+    ++..+|.++.|+|||||++++
T Consensus       112 ~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          112 QKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             SCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence            599999999999988    468899999999999999998

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.31  E-value=4.8e-12  Score=118.42  Aligned_cols=96  Identities=17%  Similarity=0.226  Sum_probs=74.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCCCCcceeeecccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYPRTYDLLHSSFLLSD  294 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp~sFDlVh~~~~l~~  294 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ .+++.+.++    |+ +..+..... .++++++||+|+|..+|+|
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~fD~i~~~~~~~~  196 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDIN-AANIQENYDFIVSTVVFMF  196 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGG-GCCCCSCEEEEEECSSGGG
T ss_pred             CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccc-cccccCCccEEEEccchhh
Confidence            46999999999999999998865   47788888 788877665    32 223322222 2445799999999999999


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +.. .....+|.++.|+|||||++++.
T Consensus       197 ~~~-~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          197 LNR-ERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             SCG-GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCH-HHHHHHHHHHHHhcCCCcEEEEE
Confidence            854 45778999999999999997775

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.30  E-value=2.9e-12  Score=125.29  Aligned_cols=100  Identities=14%  Similarity=0.278  Sum_probs=75.4

Q ss_pred             CCceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhc----Cc---eee-eccccccCCCCCCCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GL---IGM-YHDWCESFNTYPRTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~R----gl---~~~-~~d~~e~~lpfp~sFDlVh~~  289 (363)
                      ...+|||+|||+|.++..|++.  +.   .++..|.+.+++.+.++    |+   +.. .+|..+..+|+|++||+|++.
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~  255 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS  255 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence            3579999999999999999873  33   35666766788877765    32   322 344322223678899999999


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      .+|+|+++. ....+|.++.|+|||||+++|.|.
T Consensus       256 ~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~  288 (363)
T 3dp7_A          256 QFLDCFSEE-EVISILTRVAQSIGKDSKVYIMET  288 (363)
T ss_dssp             SCSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             chhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEee
Confidence            999998754 456899999999999999999763

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.30  E-value=5.5e-12  Score=115.34  Aligned_cols=97  Identities=20%  Similarity=0.296  Sum_probs=72.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCCCCcceeeeccc-cc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYPRTYDLLHSSFL-LS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp~sFDlVh~~~~-l~  293 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .|++.+.++    ++ +..+..... .++++++||+|+|... ++
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~~~~~fD~v~~~~~~~~  117 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVL-EIAFKNEFDAVTMFFSTIM  117 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGG-GCCCCSCEEEEEECSSGGG
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChh-hcccCCCccEEEEcCCchh
Confidence            46999999999999999998864   47788888 888888765    22 223332223 2566789999998744 44


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |+ +..+...+|.++.|+|||||.+++..
T Consensus       118 ~~-~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          118 YF-DEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             GS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cC-CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            43 33456889999999999999998864

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.29  E-value=1.3e-11  Score=111.49  Aligned_cols=122  Identities=13%  Similarity=0.038  Sum_probs=85.7

Q ss_pred             CceEEEeccc-ccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNAS-YGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG-~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+||| +|.++..|+...  ...|+++|.+ .+++.+.++    |+ +.++...+....+++ ++||+|+++-.+
T Consensus        56 ~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~  133 (230)
T 3evz_A           56 GEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY  133 (230)
T ss_dssp             SCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred             CCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence            4699999999 999999998762  2246788888 788877655    32 333332222345677 999999998666


Q ss_pred             cccccc----------------CCHHHHHHHHhHhccCCeEEEEEc--CHHHHHHHHHHHHhCCceeeee
Q 017983          293 SDVTQR----------------CDIADVAVEMDRILRPGGYVLVQD--TLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       293 ~~~~~~----------------~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      .+..+.                ..+..++.++.|+|||||++++.-  .......+.++++...|+....
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~  203 (230)
T 3evz_A          134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDI  203 (230)
T ss_dssp             C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEE
Confidence            543221                113679999999999999999853  3456778888888888876554

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.29  E-value=3.1e-11  Score=116.12  Aligned_cols=124  Identities=12%  Similarity=0.159  Sum_probs=85.7

Q ss_pred             hhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeee-ccccccCCC---CC-CCc
Q 017983          211 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMY-HDWCESFNT---YP-RTY  283 (363)
Q Consensus       211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~-~d~~e~~lp---fp-~sF  283 (363)
                      ++.+++.. ...+|||+|||||+|+..|+..+..  .|+++|.+ +||..+..+.. +..+ ..... .++   +| .+|
T Consensus        77 l~~~~~~~-~g~~vLDiGcGTG~~t~~L~~~ga~--~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~-~l~~~~l~~~~f  152 (291)
T 3hp7_A           77 LAVFNLSV-EDMITIDIGASTGGFTDVMLQNGAK--LVYAVDVGTNQLVWKLRQDDRVRSMEQYNFR-YAEPVDFTEGLP  152 (291)
T ss_dssp             HHHTTCCC-TTCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSSSCSCHHHHTCTTEEEECSCCGG-GCCGGGCTTCCC
T ss_pred             HHhcCCCc-cccEEEecCCCccHHHHHHHhCCCC--EEEEEECCHHHHHHHHHhCcccceecccCce-ecchhhCCCCCC
Confidence            33344432 3469999999999999999887642  47788988 89987554321 1111 00011 122   45 679


Q ss_pred             ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC----------------------HHHHHHHHHHHHhCCcee
Q 017983          284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------------------LEMINKLKPVLHSLQWST  341 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------------------~~~~~~i~~l~~~l~W~~  341 (363)
                      |+|.|..+|+++      ..+|.|+.|+|||||.+++...                      ...++++.+++....|.+
T Consensus       153 D~v~~d~sf~sl------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v  226 (291)
T 3hp7_A          153 SFASIDVSFISL------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSV  226 (291)
T ss_dssp             SEEEECCSSSCG------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEE
T ss_pred             CEEEEEeeHhhH------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEE
Confidence            999999888865      4599999999999999999711                      125677888888888886


Q ss_pred             eee
Q 017983          342 NIY  344 (363)
Q Consensus       342 ~~~  344 (363)
                      ...
T Consensus       227 ~~~  229 (291)
T 3hp7_A          227 KGL  229 (291)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.29  E-value=4.5e-12  Score=115.22  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=63.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-ch----HHHHHhcCcee-eeccccccC---CCCCCCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DT----LSIIFDRGLIG-MYHDWCESF---NTYPRTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~----L~~a~~Rgl~~-~~~d~~e~~---lpfp~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++... ...|+++|.+ .|    ++.+.++..+. ...| +...   .+++++||+|+|+. 
T Consensus        58 g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d-~~~~~~~~~~~~~fD~V~~~~-  134 (210)
T 1nt2_A           58 DERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFD-ASKPWKYSGIVEKVDLIYQDI-  134 (210)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSC-TTCGGGTTTTCCCEEEEEECC-
T ss_pred             CCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcC-CCCchhhcccccceeEEEEec-
Confidence            45999999999999998887421 1247788888 54    44555443222 2233 2221   35569999999872 


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ..+    .....++.|+.|+|||||++++.
T Consensus       135 ~~~----~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          135 AQK----NQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             CST----THHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCh----hHHHHHHHHHHHHhCCCCEEEEE
Confidence            221    22345699999999999999997

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=3.2e-12  Score=116.67  Aligned_cols=99  Identities=10%  Similarity=-0.018  Sum_probs=74.5

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc---eeeeccccccCCC----CC--CCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNT----YP--RTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl---~~~~~d~~e~~lp----fp--~sFDlVh~~  289 (363)
                      +..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++..   +..+..... .++    |+  ..||+|++.
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGL-VPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTT-CHHHHHHHHHHHCSCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECccc-ccccccccccccCccEEEEc
Confidence            346899999999999999998654   47788988 89998888742   222221111 122    22  249999999


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      .+++|++. .+...+|.|+.|+|||||+++|.+.
T Consensus       132 ~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          132 TGFHHIPV-EKRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             SSSTTSCG-GGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             chhhcCCH-HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99999863 3578999999999999999998864

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.27  E-value=9.1e-12  Score=109.94  Aligned_cols=133  Identities=14%  Similarity=0.094  Sum_probs=87.3

Q ss_pred             CceEEEecccccHHHHHhhcC--CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      ..+|||+|||+|.++..|++.  +.  ..++++|.+ .+++.+.++    |+   +..+....+....+. ++||+|++.
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  100 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGEN--GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN  100 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence            359999999999999998875  21  157888988 788877766    22   333433333323355 999999998


Q ss_pred             ccccc------ccccCCHHHHHHHHhHhccCCeEEEEEcC------HHHHHHHHHHHHhCC---ceeeee--------cc
Q 017983          290 FLLSD------VTQRCDIADVAVEMDRILRPGGYVLVQDT------LEMINKLKPVLHSLQ---WSTNIY--------HD  346 (363)
Q Consensus       290 ~~l~~------~~~~~~~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~l~~~l~---W~~~~~--------~~  346 (363)
                      ..+..      .........++.++.|+|||||++++.+.      ......+.+..+.+.   |.+...        ..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp  180 (197)
T 3eey_A          101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPP  180 (197)
T ss_dssp             ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCC
T ss_pred             CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCC
Confidence            76511      11112345799999999999999999852      224456666665554   665443        23


Q ss_pred             eEEEEEecc
Q 017983          347 QFLVGKKGF  355 (363)
Q Consensus       347 ~~li~~K~~  355 (363)
                      .++|.+|..
T Consensus       181 ~~~~~~~~~  189 (197)
T 3eey_A          181 ILVCIEKIS  189 (197)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEEcc
Confidence            456666653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.27  E-value=2.6e-11  Score=109.33  Aligned_cols=111  Identities=13%  Similarity=0.016  Sum_probs=79.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|+..+.   .|+++|.+ ++++.|.++    |+   +.++.......++...+||+|++...+
T Consensus        56 ~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~  132 (204)
T 3njr_A           56 GELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG  132 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred             CCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence            46999999999999999998743   46788888 788887765    22   333333233223333689999987643


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhCCceee
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~  342 (363)
                             +.+ ++.++.|+|||||++++... .+...++.++.+...++..
T Consensus       133 -------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~  175 (204)
T 3njr_A          133 -------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLL  175 (204)
T ss_dssp             -------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred             -------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence                   345 99999999999999999864 4566667777766665543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.26  E-value=1.3e-11  Score=107.03  Aligned_cols=111  Identities=15%  Similarity=0.213  Sum_probs=77.7

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCCC-CCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      +..+|||+|||+|.++..++..+.   .++++|.+ .+++.+.++    ++    +........  .+++ ++||+|+++
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~D~v~~~  126 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLY--ENVKDRKYNKIITN  126 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTT--TTCTTSCEEEEEEC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchh--cccccCCceEEEEC
Confidence            346999999999999999988743   46777887 788777665    22    233332222  2445 899999999


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhC
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSL  337 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l  337 (363)
                      ..+++.  ......++.++.|+|||||.+++.+... ....+.+..+..
T Consensus       127 ~~~~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  173 (194)
T 1dus_A          127 PPIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV  173 (194)
T ss_dssp             CCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred             CCcccc--hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH
Confidence            887752  2245789999999999999999986543 333344444433

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.26  E-value=9.7e-11  Score=100.73  Aligned_cols=110  Identities=13%  Similarity=0.146  Sum_probs=82.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|+..+.   .++++|.+ .+++.+.++    |+  +..+......  +++ ++||+|++..+ 
T Consensus        36 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~i~~~~~-  109 (183)
T 2yxd_A           36 DDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED--VLDKLEFNKAFIGGT-  109 (183)
T ss_dssp             TCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH--HGGGCCCSEEEECSC-
T ss_pred             CCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc--cccCCCCcEEEECCc-
Confidence            45999999999999999988433   46777887 788877765    22  3333322222  567 89999999877 


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCceeeee
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                            .++..++.++.|+  |||.+++.+ ..+...++.+.++...|++...
T Consensus       110 ------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          110 ------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             ------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence                  3467899999999  999999987 4556777888888888877665

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.25  E-value=5.1e-11  Score=103.07  Aligned_cols=114  Identities=19%  Similarity=0.230  Sum_probs=81.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..++...   ..++++|.+ .+++.+.++    |+   +..........++..++||+|++...+
T Consensus        34 ~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~  110 (192)
T 1l3i_A           34 NDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (192)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCch
Confidence            4699999999999999998876   357788887 788777663    22   222222122112222689999998776


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhCCceeee
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~~  343 (363)
                      +|      +..++.++.|+|||||.+++.+. ......+.++++...|+...
T Consensus       111 ~~------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~  156 (192)
T 1l3i_A          111 GE------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI  156 (192)
T ss_dssp             TC------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred             HH------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEE
Confidence            54      46799999999999999999865 44567777777777675443

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.25  E-value=1.5e-11  Score=107.09  Aligned_cols=124  Identities=18%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             cccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc--eeeeccccccCCCC---C-CCccee
Q 017983          214 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTY---P-RTYDLL  286 (363)
Q Consensus       214 l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl--~~~~~d~~e~~lpf---p-~sFDlV  286 (363)
                      +++++  ..+|||+|||.                 +.+|.+ .|++.+.++..  +.......+ .+|+   + ++||+|
T Consensus         8 ~g~~~--g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~-~~~~~~~~~~~fD~V   67 (176)
T 2ld4_A            8 FGISA--GQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIK-QLLQSAHKESSFDII   67 (176)
T ss_dssp             TTCCT--TSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGG-GGGGGCCCSSCEEEE
T ss_pred             cCCCC--CCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechh-cCccccCCCCCEeEE
Confidence            44544  46999999996                 125777 89999988741  222222223 3555   7 999999


Q ss_pred             eeccccccc-cccCCHHHHHHHHhHhccCCeEEEEEcCHH----------HHHHHHHHHHhCCceeeeec----------
Q 017983          287 HSSFLLSDV-TQRCDIADVAVEMDRILRPGGYVLVQDTLE----------MINKLKPVLHSLQWSTNIYH----------  345 (363)
Q Consensus       287 h~~~~l~~~-~~~~~~~~~L~Em~RVLRPGG~lii~D~~~----------~~~~i~~l~~~l~W~~~~~~----------  345 (363)
                      +|..+++|+ .+   ...+|.|+.|+|||||++++.+...          ....+.+.++.-.+ +.+..          
T Consensus        68 ~~~~~l~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~  143 (176)
T 2ld4_A           68 LSGLVPGSTTLH---SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEE  143 (176)
T ss_dssp             EECCSTTCCCCC---CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHH
T ss_pred             EECChhhhcccC---HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHH
Confidence            999999998 44   4789999999999999999964311          14566666655444 22220          


Q ss_pred             ----------------ceEEEEEeccCCCCCC
Q 017983          346 ----------------DQFLVGKKGFWRPTGG  361 (363)
Q Consensus       346 ----------------~~~li~~K~~w~~~~~  361 (363)
                                      --+++++|+-|..+++
T Consensus       144 ~~~~~~~~g~~~~~~~~~~~~a~Kp~~~~gs~  175 (176)
T 2ld4_A          144 VQSVREHLGHESDNLLFVQITGKKPNFEVGSS  175 (176)
T ss_dssp             HHHHHHHTCCCCSSEEEEEEEEECCCSSCCSC
T ss_pred             HHHHHHHhcccCCceEEEEEeccCCcccccCC
Confidence                            1267889998876653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.25  E-value=1.6e-11  Score=109.12  Aligned_cols=112  Identities=18%  Similarity=0.261  Sum_probs=84.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|++.+..  .++++|.+ .+++.+.++    ++  +..+..   ..+.++ ++||+|++...+
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~~~fD~i~~~~~~  135 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHKLGAK--SVLATDISDESMTAAEENAALNGIYDIALQKT---SLLADVDGKFDLIVANILA  135 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCCCEEEES---STTTTCCSCEEEEEEESCH
T ss_pred             CCEEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEec---cccccCCCCceEEEECCcH
Confidence            359999999999999999887542  47788888 788887775    32  223332   234566 999999999877


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhCCceeee
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~~  343 (363)
                      +++      ..++.++.|+|||||++++.+. ......+.+++....++...
T Consensus       136 ~~~------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~  181 (205)
T 3grz_A          136 EIL------LDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDL  181 (205)
T ss_dssp             HHH------HHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEE
T ss_pred             HHH------HHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEE
Confidence            753      5699999999999999999753 33466777778777776544

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.24  E-value=4.5e-12  Score=116.14  Aligned_cols=122  Identities=11%  Similarity=0.134  Sum_probs=85.3

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc---------------------------------
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---------------------------------  265 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl---------------------------------  265 (363)
                      ...+|||+|||+|.++..|+..+.  ..|+++|.+ .|++.+.++..                                 
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            346899999999999998887654  468888998 88888765421                                 


Q ss_pred             --e-eeeccccccCCC---CC-CCcceeeeccccccccc-cCCHHHHHHHHhHhccCCeEEEEEcCHH------------
Q 017983          266 --I-GMYHDWCESFNT---YP-RTYDLLHSSFLLSDVTQ-RCDIADVAVEMDRILRPGGYVLVQDTLE------------  325 (363)
Q Consensus       266 --~-~~~~d~~e~~lp---fp-~sFDlVh~~~~l~~~~~-~~~~~~~L~Em~RVLRPGG~lii~D~~~------------  325 (363)
                        + .......+...+   .. ++||+|+|..+++|+.. ..++..+|.++.|+|||||++++.+...            
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~  213 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS  213 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence              2 222222222223   22 79999999999995432 1246789999999999999999986210            


Q ss_pred             ----HHHHHHHHHHhCCceeee
Q 017983          326 ----MINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       326 ----~~~~i~~l~~~l~W~~~~  343 (363)
                          ..+.+.+++....++...
T Consensus       214 ~~~~~~~~~~~~l~~aGf~~~~  235 (265)
T 2i62_A          214 SLPLGWETVRDAVEEAGYTIEQ  235 (265)
T ss_dssp             CCCCCHHHHHHHHHHTTCEEEE
T ss_pred             ccccCHHHHHHHHHHCCCEEEE
Confidence                234677777766666543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.24  E-value=1.7e-11  Score=113.58  Aligned_cols=116  Identities=17%  Similarity=0.204  Sum_probs=76.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----------Cc--eeeeccccccCCC--CC-CCcc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----------GL--IGMYHDWCESFNT--YP-RTYD  284 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----------gl--~~~~~d~~e~~lp--fp-~sFD  284 (363)
                      ..+|||+|||+|.++..|+...- ..+++++|.+ .|++.|.++          ++  +.++...+...+|  |+ ++||
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           47 QVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            35899999999999999987521 1257888988 888877542          22  3344433443466  78 9999


Q ss_pred             eeeeccccccccc-----cCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHhC
Q 017983          285 LLHSSFLLSDVTQ-----RCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSL  337 (363)
Q Consensus       285 lVh~~~~l~~~~~-----~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l  337 (363)
                      .|++.+.-.+...     +.....+|.++.|+|||||.+++. |.......+.+.+...
T Consensus       126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~  184 (235)
T 3ckk_A          126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEH  184 (235)
T ss_dssp             EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred             EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence            9987543222110     011146999999999999999985 5555566665555443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.22  E-value=4.2e-11  Score=107.66  Aligned_cols=120  Identities=18%  Similarity=0.172  Sum_probs=82.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC--CC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT--YP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp--fp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|+.... ..+++++|.+ .++..|.++    |+  +.++...... ++  ++ ++||+|++..
T Consensus        42 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~~  119 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLNF  119 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEES
T ss_pred             CCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEEC
Confidence            35899999999999999987521 1247788888 788877664    32  3334333332 55  77 8999999986


Q ss_pred             cccccc-----ccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCceee
Q 017983          291 LLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       291 ~l~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~~~  342 (363)
                      ...+..     ..-....+|.++.|+|||||.+++.. ..+....+.++.....|...
T Consensus       120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~  177 (214)
T 1yzh_A          120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN  177 (214)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeee
Confidence            543211     11123579999999999999999975 44556677666666566543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.22  E-value=1.2e-10  Score=106.81  Aligned_cols=128  Identities=16%  Similarity=0.181  Sum_probs=87.2

Q ss_pred             CceEEEecccccHHHHHhhc--CCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCC----CCCcceee
Q 017983          221 VRNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTY----PRTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~--~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpf----p~sFDlVh  287 (363)
                      ..+|||+|||+|.++..|+.  .+.   .|+++|.+ .|++.+.++    |+  +.+++..++. +++    +++||+|+
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~V~  146 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAET-FGQRKDVRESYDIVT  146 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHH-HTTCTTTTTCEEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHH-hcccccccCCccEEE
Confidence            45999999999999888884  333   46788888 788877664    33  3444433333 443    37999999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcC---HHHHHHHHHHHHhCCceeeee----------cceEEEEEec
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT---LEMINKLKPVLHSLQWSTNIY----------HDQFLVGKKG  354 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~---~~~~~~i~~l~~~l~W~~~~~----------~~~~li~~K~  354 (363)
                      |..+       .++..++.++.|+|||||++++.+.   .+.+..+.+.++...++....          ...+++.+|.
T Consensus       147 ~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~  219 (240)
T 1xdz_A          147 ARAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKI  219 (240)
T ss_dssp             EECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred             Eecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEec
Confidence            8652       2467899999999999999999864   334555666666666654322          2346667776


Q ss_pred             cCCCC
Q 017983          355 FWRPT  359 (363)
Q Consensus       355 ~w~~~  359 (363)
                      -.++.
T Consensus       220 ~~~~~  224 (240)
T 1xdz_A          220 KNTPK  224 (240)
T ss_dssp             SCCCT
T ss_pred             CCCCC
Confidence            54443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.22  E-value=1.1e-11  Score=113.42  Aligned_cols=115  Identities=12%  Similarity=0.102  Sum_probs=77.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC--CC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT--YP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp--fp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|+..... .+|+++|.+ +|++.+.++    |+  +.++...++..++  ++ ++||.|++.+
T Consensus        35 ~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           35 APVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            468999999999999999874211 247788988 888776654    43  3334333333344  77 9999999875


Q ss_pred             ccccccccC-----CHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHh
Q 017983          291 LLSDVTQRC-----DIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHS  336 (363)
Q Consensus       291 ~l~~~~~~~-----~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~  336 (363)
                      .........     ....++.++.|+|||||++++... ......+.+++..
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~  165 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS  165 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence            433211111     113599999999999999998754 4456666666543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.21  E-value=2.1e-11  Score=119.09  Aligned_cols=98  Identities=15%  Similarity=0.184  Sum_probs=73.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..+++.+..  .|+++|.++|++.|.++    |+   +.++....+ .+++| ++||+|++..+.
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~g~~--~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVE-EVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHTTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTT-TCCCSSSCEEEEEECCCB
T ss_pred             CCEEEEEeccchHHHHHHHHCCCC--EEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHH-HccCCCCceEEEEEcccc
Confidence            369999999999999999987642  35666766677666554    33   344443333 36898 999999998776


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      .++.....++.++.++.|+|||||+++..
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            66655567889999999999999998753

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.21  E-value=6.2e-11  Score=107.42  Aligned_cols=119  Identities=8%  Similarity=0.094  Sum_probs=80.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC--CC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT--YP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp--fp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|+.... ..+++++|.+ +++..|.++    |+  +.+++..+.. ++  |+ ++||.|++.+
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEES
T ss_pred             CceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEEC
Confidence            35899999999999999987421 1257888998 888877764    33  3334333332 44  77 9999998764


Q ss_pred             cccccc-----ccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCcee
Q 017983          291 LLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWST  341 (363)
Q Consensus       291 ~l~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~~  341 (363)
                      ...+..     .+-....+|.++.|+|||||.+++.. .......+.++.....|..
T Consensus       117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~  173 (213)
T 2fca_A          117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL  173 (213)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred             CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence            432111     11113679999999999999999874 5555566666665555643

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.21  E-value=8.3e-11  Score=102.78  Aligned_cols=114  Identities=16%  Similarity=0.098  Sum_probs=84.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeecccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~  298 (363)
                      ..+|||+|||+|.++..|++.+    .|+++|.+ .|++.  ... +..+.....  -+++ ++||+|+++..+++..+.
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~-~~~~~~d~~--~~~~~~~fD~i~~n~~~~~~~~~   94 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRG-GNLVRADLL--CSINQESVDVVVFNPPYVPDTDD   94 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSS-SCEEECSTT--TTBCGGGCSEEEECCCCBTTCCC
T ss_pred             CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccC-CeEEECChh--hhcccCCCCEEEECCCCccCCcc
Confidence            3599999999999999999886    68888988 78877  222 233332222  3677 999999999888764432


Q ss_pred             ------CCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCceeeee
Q 017983          299 ------CDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       299 ------~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~~~  344 (363)
                            .+...++.++.|.| |||.+++.... .....+.++++...|+....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~  146 (170)
T 3q87_B           95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRIL  146 (170)
T ss_dssp             TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEE
T ss_pred             ccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEE
Confidence                  11246889999999 99999997643 45677888888888876544

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.20  E-value=1.7e-11  Score=113.44  Aligned_cols=98  Identities=16%  Similarity=0.202  Sum_probs=69.2

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-c------hHHHHHhc----Cc---eeeec-c-ccccCCCCC-CC
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-D------TLSIIFDR----GL---IGMYH-D-WCESFNTYP-RT  282 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~------~L~~a~~R----gl---~~~~~-d-~~e~~lpfp-~s  282 (363)
                      ..+|||+|||+|.++..|++. +.. ..|+++|.+ .      |++.+.++    |+   +.... | .....+||+ ++
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  122 (275)
T 3bkx_A           44 GEKILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQH  122 (275)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCC
Confidence            469999999999999999875 210 135666766 4      78877665    22   33332 2 222357888 99


Q ss_pred             cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ||+|++..+++|+++.   ..++..+.++++|||++++.+
T Consensus       123 fD~v~~~~~l~~~~~~---~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          123 FDRVVLAHSLWYFASA---NALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             CSEEEEESCGGGSSCH---HHHHHHHHHHTTTCSEEEEEE
T ss_pred             EEEEEEccchhhCCCH---HHHHHHHHHHhCCCCEEEEEE
Confidence            9999999999998753   455666666666699999975

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.19  E-value=2.3e-11  Score=116.78  Aligned_cols=98  Identities=22%  Similarity=0.299  Sum_probs=73.5

Q ss_pred             CCCceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhc----Cc---eeee-ccccccCCCCCCCcceeee
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GL---IGMY-HDWCESFNTYPRTYDLLHS  288 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~-~d~~e~~lpfp~sFDlVh~  288 (363)
                      ....+|||+|||+|.++..|++.  +..   ++..|.+.+++.+.++    |+   +... +|.   +.|+|.+||+|++
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~p~~~D~v~~  241 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLS---GTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSF---FDPLPAGAGGYVL  241 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCCCSCSEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCe---EEEecCHHHHHHHHHhhhhcCcCcCeEEecCCC---CCCCCCCCcEEEE
Confidence            34579999999999999999873  233   4555666677777654    32   3333 332   2456668999999


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ..+++|+++. ....+|.++.|+|||||+++|.|.
T Consensus       242 ~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          242 SAVLHDWDDL-SAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             ESCGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             ehhhccCCHH-HHHHHHHHHHHhcCCCCEEEEEee
Confidence            9999999753 357899999999999999999874

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.19  E-value=2.9e-11  Score=109.82  Aligned_cols=110  Identities=14%  Similarity=0.120  Sum_probs=78.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCC--CCcceeeecccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP--RTYDLLHSSFLLSDVT  296 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp--~sFDlVh~~~~l~~~~  296 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++.. +..++......+|++  ++||+|+++   .   
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~---~---  119 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR---R---  119 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE---S---
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC---C---
Confidence            36999999999999999998754   46788888 89999988732 233332232357776  899999987   1   


Q ss_pred             ccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceee
Q 017983          297 QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       297 ~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~  342 (363)
                         +...+|.++.|+|||||+++..........+.+.+....++..
T Consensus       120 ---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~  162 (226)
T 3m33_A          120 ---GPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIV  162 (226)
T ss_dssp             ---CCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEE
T ss_pred             ---CHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence               2345899999999999999944332233456666666555543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.18  E-value=1.1e-10  Score=111.28  Aligned_cols=98  Identities=20%  Similarity=0.236  Sum_probs=73.3

Q ss_pred             CCceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhc----Cc---eeee-ccccccCCCCCCCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GL---IGMY-HDWCESFNTYPRTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~-~d~~e~~lpfp~sFDlVh~~  289 (363)
                      +..+|||+|||+|.++..|++.  +.   .++++|.+.+++.+.++    |+   +... +|. . ..+++..||+|++.
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~-~~~~~~~~D~v~~~  239 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWASVLEVAKENARIQGVASRYHTIAGSA-F-EVDYGNDYDLVLLP  239 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCT-T-TSCCCSCEEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCcceEEEeccc-c-cCCCCCCCcEEEEc
Confidence            4579999999999999999875  33   46667777777777664    22   3333 332 2 24677559999999


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      .+++|+++. +...+|.++.|+|||||+++|.|.
T Consensus       240 ~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~  272 (335)
T 2r3s_A          240 NFLHHFDVA-TCEQLLRKIKTALAVEGKVIVFDF  272 (335)
T ss_dssp             SCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             chhccCCHH-HHHHHHHHHHHhCCCCcEEEEEee
Confidence            999998543 457899999999999999999863

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.18  E-value=2.5e-11  Score=114.80  Aligned_cols=102  Identities=13%  Similarity=0.110  Sum_probs=74.6

Q ss_pred             CCceEEEecccc---cHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcC----ceeee-ccccccC---------CCCC
Q 017983          220 SVRNVMDMNASY---GGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG----LIGMY-HDWCESF---------NTYP  280 (363)
Q Consensus       220 ~~r~VLDvGCG~---G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~-~d~~e~~---------lpfp  280 (363)
                      .+++|||+|||+   |.++..+... +-  ..|+++|.+ .||+.++++-    .+..+ .|..+..         -.++
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence            457999999999   9887666542 21  247788988 8999888762    22222 2211100         0255


Q ss_pred             -CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          281 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       281 -~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                       .+||+|++..+|+|+++. ....+|.|+.|+|||||+|+|++..
T Consensus       155 ~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             TTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             CCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence             699999999999999764 6789999999999999999999753

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.17  E-value=6.5e-11  Score=115.29  Aligned_cols=96  Identities=19%  Similarity=0.191  Sum_probs=69.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..+++.+..  .|+++|.++|++.|.++    |+   +.++....+ .++++ ++||+|++..+.
T Consensus        65 ~~~VLDiGcGtG~ls~~la~~g~~--~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~Ivs~~~~  141 (340)
T 2fyt_A           65 DKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIE-EVHLPVEKVDVIISEWMG  141 (340)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT-TSCCSCSCEEEEEECCCB
T ss_pred             CCEEEEeeccCcHHHHHHHHcCCC--EEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHH-HhcCCCCcEEEEEEcCch
Confidence            469999999999999999887641  35666766677766654    32   344443333 36888 999999998743


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVL  319 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~li  319 (363)
                      ..+.+...+..+|.++.|+|||||.++
T Consensus       142 ~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          142 YFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            333333456789999999999999988

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.17  E-value=1.1e-10  Score=113.47  Aligned_cols=100  Identities=28%  Similarity=0.403  Sum_probs=72.1

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhc----Cc---eeee-ccccccCCCCCCCcceeeecc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMY-HDWCESFNTYPRTYDLLHSSF  290 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~-~d~~e~~lpfp~sFDlVh~~~  290 (363)
                      .+..+|||+|||+|.++..|++... ...++.+|.+.+++.+.++    |+   +... +|..   -++|..||+|++..
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~D~v~~~~  256 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFF---KPLPVTADVVLLSF  256 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT---SCCSCCEEEEEEES
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCC---CcCCCCCCEEEEec
Confidence            3457999999999999999987521 1134556665677777654    32   3333 3321   24664599999999


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +++|+.+. ....+|.++.|+|||||+++|.|.
T Consensus       257 vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          257 VLLNWSDE-DALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             CGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccCCCHH-HHHHHHHHHHHhcCCCcEEEEEec
Confidence            99998753 235799999999999999999876

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.16  E-value=8.3e-11  Score=116.05  Aligned_cols=100  Identities=17%  Similarity=0.175  Sum_probs=73.9

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeecccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ...+|||+|||+|.++..+++.+..  .|+++|.++|++.+.++    |+   +.++....+ .++++++||+|++..+.
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g~~--~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~D~Iv~~~~~  139 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAGAR--KVYAVEATKMADHARALVKANNLDHIVEVIEGSVE-DISLPEKVDVIISEWMG  139 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCS--EEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGG-GCCCSSCEEEEEECCCB
T ss_pred             CCCEEEEeccCcCHHHHHHHhcCCC--EEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchh-hcCcCCcceEEEEcChh
Confidence            3469999999999999999987652  35666766677766554    32   344443343 36677999999997655


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +++.....+..++.+++|+|||||.+++..
T Consensus       140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          140 YFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             TTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             hcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            555444567889999999999999998753

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.16  E-value=5.1e-11  Score=115.03  Aligned_cols=92  Identities=10%  Similarity=0.060  Sum_probs=67.5

Q ss_pred             CCceEEEecccccHHHHHh-hcC-CCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAAL-IDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L-~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      +..+|||+|||+|++++.+ +.. +.   .|+++|.+ +|++.|+++    |+  +.+....+   ..++ ++||+|++.
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa---~~l~d~~FDvV~~~  195 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE---TVIDGLEFDVLMVA  195 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG---GGGGGCCCSEEEEC
T ss_pred             CcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch---hhCCCCCcCEEEEC
Confidence            3469999999999877554 332 33   47888988 899988876    44  33333222   2356 999999986


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ...      .+.+.++.|+.|+|||||.+++.+.
T Consensus       196 a~~------~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          196 ALA------EPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             TTC------SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCc------cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            441      3567899999999999999999975

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.16  E-value=6.8e-11  Score=109.50  Aligned_cols=115  Identities=14%  Similarity=0.122  Sum_probs=73.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eee-----eccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGM-----YHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~-----~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.|+..|++.+..  .|+++|.+ +|++.+..+.. ...     +...+...++. ..||.+.+..+|.
T Consensus        38 g~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~D~v~~  114 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ-GRPSFTSIDVSFI  114 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-CCCSEEEECCSSS
T ss_pred             CCEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-CCCCEEEEEEEhh
Confidence            469999999999999999988642  47888988 89988776532 110     11000011111 1233333333344


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcCH----------------------HHHHHHHHHHHhCCceeeee
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDTL----------------------EMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~----------------------~~~~~i~~l~~~l~W~~~~~  344 (363)
                      ++      ..+|.|+.|+|||||++++....                      ...+++.+++....|++...
T Consensus       115 ~l------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~  181 (232)
T 3opn_A          115 SL------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGL  181 (232)
T ss_dssp             CG------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             hH------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEE
Confidence            33      34999999999999999987211                      13456777777777875443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.15  E-value=3e-10  Score=105.95  Aligned_cols=131  Identities=18%  Similarity=0.167  Sum_probs=88.3

Q ss_pred             CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC--C-CCCcceeee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT--Y-PRTYDLLHS  288 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp--f-p~sFDlVh~  288 (363)
                      ...+|||+|||+|.++..|+.. +.  ..|+++|.+ .++.++.+.    |+  +.+++...+...+  . .++||+|+|
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPE--LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence            3469999999999988888763 22  246788888 788777654    33  4444443443221  2 389999998


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEEcC---HHHHHHHHHHHHhCCceeeee----------cceEEEEEecc
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT---LEMINKLKPVLHSLQWSTNIY----------HDQFLVGKKGF  355 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~---~~~~~~i~~l~~~l~W~~~~~----------~~~~li~~K~~  355 (363)
                      ..+       .++..++.++.|+|||||++++...   .+.+..+...++.+.++....          ...+++.+|.-
T Consensus       158 ~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~~  230 (249)
T 3g89_A          158 RAV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTA  230 (249)
T ss_dssp             ESS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred             CCc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeCC
Confidence            643       2357799999999999999998754   455666666667777764332          23456667765


Q ss_pred             CCCC
Q 017983          356 WRPT  359 (363)
Q Consensus       356 w~~~  359 (363)
                      .++.
T Consensus       231 ~t~~  234 (249)
T 3g89_A          231 PTPP  234 (249)
T ss_dssp             CCCT
T ss_pred             CCCC
Confidence            5543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.15  E-value=6.4e-11  Score=113.51  Aligned_cols=95  Identities=17%  Similarity=0.246  Sum_probs=70.9

Q ss_pred             ceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhc----Cc---eeee-ccccccCCCCCCCcceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GL---IGMY-HDWCESFNTYPRTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~-~d~~e~~lpfp~sFDlVh~~~~  291 (363)
                      .+|||+|||+|.++..|++.  +.   .++.+|.+.+++.+.++    |+   +... +|. .  -++|++||+|++..+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~--~~~~~~~D~v~~~~v  242 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSA---RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDM-L--QEVPSNGDIYLLSRI  242 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTC---EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCT-T--TCCCSSCSEEEEESC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCC---EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCC-C--CCCCCCCCEEEEchh
Confidence            79999999999999999874  23   34555655677766654    11   3333 332 1  256788999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++|+.+. ....+|.++.|+|||||+++|.|.
T Consensus       243 l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~  273 (334)
T 2ip2_A          243 IGDLDEA-ASLRLLGNCREAMAGDGRVVVIER  273 (334)
T ss_dssp             GGGCCHH-HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             ccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence            9998653 345899999999999999999863

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.14  E-value=5.2e-11  Score=104.90  Aligned_cols=99  Identities=14%  Similarity=0.186  Sum_probs=72.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC-CC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT-YP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp-fp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..++..+..  .|+++|.+ +|++.+.++    ++  +.+++..+...++ ++ ++||+|+++..
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p  122 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP  122 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred             CCEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence            469999999999999988776542  46788888 788877665    32  3333332332222 55 89999999887


Q ss_pred             cccccccCCHHHHHHHHhH--hccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEMDR--ILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~R--VLRPGG~lii~D~  323 (363)
                      +++..  .....++.++.|  +|||||.+++...
T Consensus       123 ~~~~~--~~~~~~l~~~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          123 YNVDS--ADVDAILAALGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             TTSCH--HHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred             CCcch--hhHHHHHHHHHhcCccCCCeEEEEEec
Confidence            77632  246789999999  9999999999764

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.14  E-value=1.5e-10  Score=105.93  Aligned_cols=127  Identities=13%  Similarity=0.220  Sum_probs=85.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-CC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-YP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-fp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|+.... ...|+++|.+ .+++.|.++    |+   +.++...+...+| +. ++||+|++..
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~  150 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA  150 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred             CCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence            46999999999999999998321 2247788887 788877664    32   3444433444456 55 8999999764


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcC-----------------HHHHHHHHHHH----HhCCceeeee--cce
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------------LEMINKLKPVL----HSLQWSTNIY--HDQ  347 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------------~~~~~~i~~l~----~~l~W~~~~~--~~~  347 (363)
                      ..      .....++.++.|+|||||++++.+.                 ......++++.    ..-++.....  .+.
T Consensus       151 ~~------~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG  224 (232)
T 3ntv_A          151 AK------AQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDG  224 (232)
T ss_dssp             TS------SSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECSTTC
T ss_pred             cH------HHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEcCCc
Confidence            32      3457799999999999999999431                 11122333333    3445654443  678


Q ss_pred             EEEEEec
Q 017983          348 FLVGKKG  354 (363)
Q Consensus       348 ~li~~K~  354 (363)
                      +.+++|+
T Consensus       225 ~~i~~k~  231 (232)
T 3ntv_A          225 LAISIKG  231 (232)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEC
Confidence            8888875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.14  E-value=3e-11  Score=112.75  Aligned_cols=103  Identities=15%  Similarity=0.079  Sum_probs=70.6

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----C-ceeeeccccc-cCCCCC-CCcc
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G-LIGMYHDWCE-SFNTYP-RTYD  284 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----g-l~~~~~d~~e-~~lpfp-~sFD  284 (363)
                      .|.+++|  .+|||+|||+|.++..|++.-.....|.++|.+ +|++.+.++    + +..+..+-+. ...++. +++|
T Consensus        72 ~l~ikpG--~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vD  149 (233)
T 4df3_A           72 ELPVKEG--DRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVD  149 (233)
T ss_dssp             CCCCCTT--CEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred             hcCCCCC--CEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEE
Confidence            4556665  599999999999999998731111236777888 888776654    2 2233333222 124566 9999


Q ss_pred             eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +|++..  .|-   .+...++.|+.|+|||||+++|.+
T Consensus       150 vVf~d~--~~~---~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          150 GLYADV--AQP---EQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EEEECC--CCT---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEec--cCC---hhHHHHHHHHHHhccCCCEEEEEE
Confidence            998753  221   245779999999999999999974

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.14  E-value=9.5e-11  Score=108.83  Aligned_cols=121  Identities=12%  Similarity=0.158  Sum_probs=86.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-CC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-YP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-fp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|+.++..  .|+++|.+ .+++.|.++    ++   +.+++.......+ ++ ++||+|+++-
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np  127 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP  127 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence            469999999999999999987543  68888988 788777664    32   3344333333222 66 9999999964


Q ss_pred             ccccc-----cc------------cCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983          291 LLSDV-----TQ------------RCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       291 ~l~~~-----~~------------~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~  343 (363)
                      -+.+.     .+            ...++.++.++.|+|||||++++.-..+...++...+....|....
T Consensus       128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~  197 (259)
T 3lpm_A          128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKR  197 (259)
T ss_dssp             CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEE
T ss_pred             CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEE
Confidence            43321     11            1235679999999999999999987777777888888877777543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.13  E-value=8.5e-11  Score=126.48  Aligned_cols=100  Identities=11%  Similarity=0.207  Sum_probs=77.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----------Cc--eeeeccccccCCCCC-CCccee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----------GL--IGMYHDWCESFNTYP-RTYDLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----------gl--~~~~~d~~e~~lpfp-~sFDlV  286 (363)
                      ..+|||+|||+|.++..|++.+.....|+++|.+ .|++.|.+|          |+  +.+++...+ .+|++ ++||+|
T Consensus       722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~-dLp~~d~sFDlV  800 (950)
T 3htx_A          722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL-EFDSRLHDVDIG  800 (950)
T ss_dssp             CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT-SCCTTSCSCCEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH-hCCcccCCeeEE
Confidence            4699999999999999999875222357888998 899988772          32  333433333 47888 999999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +|..+++|+++. ....++.|+.|+|||| .++|++.
T Consensus       801 V~~eVLeHL~dp-~l~~~L~eI~RvLKPG-~LIISTP  835 (950)
T 3htx_A          801 TCLEVIEHMEED-QACEFGEKVLSLFHPK-LLIVSTP  835 (950)
T ss_dssp             EEESCGGGSCHH-HHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred             EEeCchhhCChH-HHHHHHHHHHHHcCCC-EEEEEec
Confidence            999999999763 3456899999999999 8888753

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.13  E-value=1.1e-10  Score=112.79  Aligned_cols=96  Identities=17%  Similarity=0.212  Sum_probs=71.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..+++.+..  .|+++|.++|++.|.++    |+   +.+++...+ .+++| ++||+|++..+.
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~g~~--~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE-DVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT-TSCCSSSCEEEEEECCCB
T ss_pred             CCEEEEecCccHHHHHHHHHCCCC--EEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchh-hccCCCCcccEEEEeCch
Confidence            359999999999999999887642  35666666677666554    33   344443333 36788 999999998766


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVL  319 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~li  319 (363)
                      .++.+...+..++.++.|+|||||.++
T Consensus       116 ~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             hhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            655555668889999999999999997

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.12  E-value=5.5e-11  Score=113.25  Aligned_cols=120  Identities=17%  Similarity=0.196  Sum_probs=81.7

Q ss_pred             ccccchhHHHHHHHhhhhccccCCCCCceEEEecccccH----HHHHhhcC-CCe--EEEEeecCCc-chHHHHHhcCc-
Q 017983          195 FNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGG----FAAALIDQ-PLW--VMNVVPIDAP-DTLSIIFDRGL-  265 (363)
Q Consensus       195 F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~----faa~L~~~-~v~--v~~v~~~d~s-~~L~~a~~Rgl-  265 (363)
                      |-.+...|...... .+..     .+..+|||+|||+|.    +|..|++. +..  ...|+++|.+ +||+.|.+... 
T Consensus        86 FfRd~~~f~~l~~~-llp~-----~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~  159 (274)
T 1af7_A           86 FFREAHHFPILAEH-ARRR-----HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYR  159 (274)
T ss_dssp             TTTTTTHHHHHHHH-HHHS-----CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEE
T ss_pred             ccCChHHHHHHHHH-ccCC-----CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCc
Confidence            44566666544432 2221     123589999999997    56556553 210  1268999999 89999987420 


Q ss_pred             ------------------------------------e-eeeccccccCCCCC--CCcceeeeccccccccccCCHHHHHH
Q 017983          266 ------------------------------------I-GMYHDWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIADVAV  306 (363)
Q Consensus       266 ------------------------------------~-~~~~d~~e~~lpfp--~sFDlVh~~~~l~~~~~~~~~~~~L~  306 (363)
                                                          + -..+|..+  .||+  +.||+|+|..+++|+.+ .....++.
T Consensus       160 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~--~~~~~~~~fDlI~crnvliyf~~-~~~~~vl~  236 (274)
T 1af7_A          160 LSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE--KQYNVPGPFDAIFCRNVMIYFDK-TTQEDILR  236 (274)
T ss_dssp             GGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTC--SSCCCCCCEEEEEECSSGGGSCH-HHHHHHHH
T ss_pred             hhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCC--CCCCcCCCeeEEEECCchHhCCH-HHHHHHHH
Confidence                                                1 12344332  4565  88999999999999854 34578999


Q ss_pred             HHhHhccCCeEEEEEcC
Q 017983          307 EMDRILRPGGYVLVQDT  323 (363)
Q Consensus       307 Em~RVLRPGG~lii~D~  323 (363)
                      ++.+.|||||++++...
T Consensus       237 ~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          237 RFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             HHGGGEEEEEEEEECTT
T ss_pred             HHHHHhCCCcEEEEEec
Confidence            99999999999999654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.12  E-value=5.9e-11  Score=109.85  Aligned_cols=90  Identities=17%  Similarity=0.308  Sum_probs=68.8

Q ss_pred             CCceEEEecccccHHHHHhhcC--CCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCC-CCcceeeecccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      +..+|||+|||+|.++..|++.  +.   .++++|.+ .+++.+.+++. +.......+ .+|++ ++||+|++..+.. 
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~~~-  159 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RLPFSDTSMDAIIRIYAPC-  159 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-SCSBCTTCEEEEEEESCCC-
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcchh-hCCCCCCceeEEEEeCChh-
Confidence            3469999999999999999886  33   46778888 89999988763 222222222 47888 8999999865421 


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                               .+.|+.|+|||||++++.+.
T Consensus       160 ---------~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          160 ---------KAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             ---------CHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------hHHHHHHhcCCCcEEEEEEc
Confidence                     68999999999999999864

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.12  E-value=4e-11  Score=105.81  Aligned_cols=131  Identities=13%  Similarity=0.076  Sum_probs=76.2

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eeee-ccccccCCCCC------CCccee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMY-HDWCESFNTYP------RTYDLL  286 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~-~d~~e~~lpfp------~sFDlV  286 (363)
                      +..+|||+|||+|.++..+++... ...++++|.+ .+++.+.++-.     +..+ .|. ..  +++      ++||+|
T Consensus        30 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~--~~~~~~~~~~~fD~i  105 (215)
T 4dzr_A           30 SGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADG-IE--WLIERAERGRPWHAI  105 (215)
T ss_dssp             TTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHH-HH--HHHHHHHTTCCBSEE
T ss_pred             CCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcch-Hh--hhhhhhhccCcccEE
Confidence            356999999999999999988631 1257788887 78877766521     2222 232 21  332      799999


Q ss_pred             eecccccc------ccccC--------------C---HHHHHHHHhHhccCCeE-EEEEcCHHHHHHHHHHHH--hCCce
Q 017983          287 HSSFLLSD------VTQRC--------------D---IADVAVEMDRILRPGGY-VLVQDTLEMINKLKPVLH--SLQWS  340 (363)
Q Consensus       287 h~~~~l~~------~~~~~--------------~---~~~~L~Em~RVLRPGG~-lii~D~~~~~~~i~~l~~--~l~W~  340 (363)
                      +++--+.+      +....              .   ...++.++.|+|||||+ +++.-.......+.+++.  ...|.
T Consensus       106 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~  185 (215)
T 4dzr_A          106 VSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGF  185 (215)
T ss_dssp             EECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTE
T ss_pred             EECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCc
Confidence            99644432      11110              0   16789999999999999 665544445566777776  55564


Q ss_pred             eeee------cceEEEEEec
Q 017983          341 TNIY------HDQFLVGKKG  354 (363)
Q Consensus       341 ~~~~------~~~~li~~K~  354 (363)
                      ....      ..++++++|+
T Consensus       186 ~~~~~~~~~~~~r~~~~~~~  205 (215)
T 4dzr_A          186 RVRKVKDLRGIDRVIAVTRE  205 (215)
T ss_dssp             ECCEEECTTSCEEEEEEEEC
T ss_pred             eEEEEEecCCCEEEEEEEEc
Confidence            3222      5577777765

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.11  E-value=5.3e-11  Score=114.87  Aligned_cols=128  Identities=16%  Similarity=0.211  Sum_probs=87.9

Q ss_pred             CceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhc----Cc---eee-eccccccCCC--CCCCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GL---IGM-YHDWCESFNT--YPRTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~R----gl---~~~-~~d~~e~~lp--fp~sFDlVh~  288 (363)
                      ..+|||+|||+|.++..|++.  +..   ++..|.+.+++.+.++    ++   +.. .+|. .. .+  +++.||+|++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~-~~~~~~~~~D~v~~  254 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLT---GQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNL-LD-ARNFEGGAADVVML  254 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCE---EEEEECGGGHHHHHHHHHHTTCGGGEEEEECCT-TC-GGGGTTCCEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCe---EEEEECHHHHHHHHHHHHhcCCCCceEEEeCCc-cc-CcccCCCCccEEEE
Confidence            579999999999999999874  233   4555666677766554    32   222 3332 21 33  4578999999


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-------H--------------------HHHHHHHHHHhCCcee
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-------E--------------------MINKLKPVLHSLQWST  341 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-------~--------------------~~~~i~~l~~~l~W~~  341 (363)
                      ..+|+|+++. ....+|.++.|+|||||+++|.|..       .                    ...+++++++.-.++.
T Consensus       255 ~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  333 (352)
T 3mcz_A          255 NDCLHYFDAR-EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAV  333 (352)
T ss_dssp             ESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred             ecccccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCce
Confidence            9999998653 3578999999999999999998621       0                    0234566666666655


Q ss_pred             eee---cceEEEEEec
Q 017983          342 NIY---HDQFLVGKKG  354 (363)
Q Consensus       342 ~~~---~~~~li~~K~  354 (363)
                      ...   ...+++++|+
T Consensus       334 ~~~~~g~~~l~~a~kp  349 (352)
T 3mcz_A          334 GERSIGRYTLLIGQRS  349 (352)
T ss_dssp             EEEEETTEEEEEEECC
T ss_pred             eeeccCceEEEEEecC
Confidence            432   4557777875

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.11  E-value=1.3e-10  Score=103.07  Aligned_cols=109  Identities=11%  Similarity=0.089  Sum_probs=75.8

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|+.. +.  ..++++|.+ .+++.+.++    |+  +..++...+. ++ + ++||+|++.. 
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~-  140 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRA-  140 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSC-
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh-CC-ccCCcCEEEEec-
Confidence            359999999999999988864 21  146778887 788777654    33  3333322222 23 4 8999999753 


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceee
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~  342 (363)
                      ++      .+..++.++.|+|||||++++.......+.++++.+  .|+..
T Consensus       141 ~~------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~  183 (207)
T 1jsx_A          141 FA------SLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVE  183 (207)
T ss_dssp             SS------SHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEE
T ss_pred             cC------CHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCcee
Confidence            22      357899999999999999999866554556666555  56643

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.11  E-value=8.3e-11  Score=105.49  Aligned_cols=98  Identities=9%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCC-C-CC-cceeeec
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTY-P-RT-YDLLHSS  289 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpf-p-~s-FDlVh~~  289 (363)
                      .+|||+|||+|.++..++..+.  ..|+++|.+ .|++.+.++    |+    +.++...+...++. + ++ ||+|++.
T Consensus        55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            5899999999999998776653  247888998 888887764    22    23333223333443 4 78 9999998


Q ss_pred             cccccccccCCHHHHHHHH--hHhccCCeEEEEEcCHH
Q 017983          290 FLLSDVTQRCDIADVAVEM--DRILRPGGYVLVQDTLE  325 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D~~~  325 (363)
                      ..++ .   .....++.++  .|+|||||.+++.....
T Consensus       133 ~~~~-~---~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          133 PPFH-F---NLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCSS-S---CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCCC-C---ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            7754 2   2457788999  78999999999986544

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.11  E-value=4.5e-11  Score=116.99  Aligned_cols=97  Identities=13%  Similarity=0.180  Sum_probs=69.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceee-eccccccCCCCCCCcceeeecccccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGM-YHDWCESFNTYPRTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~-~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~  298 (363)
                      ...+|||+|||+|.++..|+++... ..++..|.+.+++.+.+..-+.. .+|. .  -|+|. ||+|++..+|+|+++.
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~-~--~~~~~-~D~v~~~~~lh~~~d~  283 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPL-IKGINFDLPQVIENAPPLSGIEHVGGDM-F--ASVPQ-GDAMILKAVCHNWSDE  283 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCCTTEEEEECCT-T--TCCCC-EEEEEEESSGGGSCHH
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCC-CeEEEeChHHHHHhhhhcCCCEEEeCCc-c--cCCCC-CCEEEEecccccCCHH
Confidence            4579999999999999999875311 12455565566665554322332 3342 1  25566 9999999999999754


Q ss_pred             CCHHHHHHHHhHhccCCeEEEEEc
Q 017983          299 CDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                       ....+|.++.|+|||||+++|.|
T Consensus       284 -~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          284 -KCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             -HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -HHHHHHHHHHHhcCCCCEEEEEE
Confidence             23489999999999999999985

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.11  E-value=3.2e-10  Score=105.02  Aligned_cols=128  Identities=9%  Similarity=0.083  Sum_probs=83.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC---CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP---RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp---~sFDlVh~~  289 (363)
                      ..+|||+|||+|.++..|+..-.....|+++|.+ .+++.|.++    |+   +.++...+...++..   ++||+|++.
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d  143 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID  143 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence            4699999999999999998751101246778887 788877765    33   333332222224432   499999986


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH------------HHHHHHH----HHHhCCceeeee-------cc
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE------------MINKLKP----VLHSLQWSTNIY-------HD  346 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~------------~~~~i~~----l~~~l~W~~~~~-------~~  346 (363)
                      ....      ....++.++.|+|||||++++.+...            ....+++    +...-+|.....       .+
T Consensus       144 ~~~~------~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~D  217 (248)
T 3tfw_A          144 ADKP------NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGTKGWD  217 (248)
T ss_dssp             SCGG------GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECSTTCSE
T ss_pred             CchH------HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCCCCCC
Confidence            4322      34679999999999999999875421            1223333    334456665443       26


Q ss_pred             eEEEEEec
Q 017983          347 QFLVGKKG  354 (363)
Q Consensus       347 ~~li~~K~  354 (363)
                      .+++++|+
T Consensus       218 G~~i~~~~  225 (248)
T 3tfw_A          218 GFTLAWVN  225 (248)
T ss_dssp             EEEEEEEC
T ss_pred             eeEEEEEe
Confidence            78888876

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.10  E-value=1.6e-10  Score=106.44  Aligned_cols=115  Identities=17%  Similarity=0.223  Sum_probs=74.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc------------Cc--eeeeccccccCCC--CC-CC
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------------GL--IGMYHDWCESFNT--YP-RT  282 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R------------gl--~~~~~d~~e~~lp--fp-~s  282 (363)
                      ..+|||+|||+|.++..|+..... .+|+++|.+ .+++.+.++            |+  +.++...+...++  |+ ++
T Consensus        50 ~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           50 KVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            468999999999999999875321 257788888 788776543            43  3333333333466  77 99


Q ss_pred             cceeeeccccccccc-----cCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHh
Q 017983          283 YDLLHSSFLLSDVTQ-----RCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHS  336 (363)
Q Consensus       283 FDlVh~~~~l~~~~~-----~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~  336 (363)
                      ||.|+...--.....     +.....++.++.|+|||||.+++. |.....+.+.+.+..
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  188 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEE  188 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHh
Confidence            999885421111000     000147999999999999999984 555555556554443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.10  E-value=3e-10  Score=103.46  Aligned_cols=94  Identities=17%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc----eeeecccccc---CCCCCCCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCES---FNTYPRTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl----~~~~~d~~e~---~lpfp~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++. +.  ..|+++|.+ .+++.+.++..    +..+...++.   .++++++||+|+    
T Consensus        75 ~~~VLDlGcG~G~~~~~la~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~----  148 (230)
T 1fbn_A           75 DSKILYLGASAGTTPSHVADIADK--GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY----  148 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTTT--SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE----
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCC--cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE----
Confidence            459999999999999999875 31  246788888 78877765431    2222221221   045558999998    


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                       +++.+......+|.++.|+|||||++++.
T Consensus       149 -~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          149 -EDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             -ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence             33333333467899999999999999994

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.10  E-value=1.9e-10  Score=107.21  Aligned_cols=112  Identities=18%  Similarity=0.196  Sum_probs=82.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++..+++.+.   .|+++|.+ .+++.+.++    |+ +...+.....  +++ ++||+|+++...+
T Consensus       121 ~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~--~~~~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA--ALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH--HGGGCCEEEEEEECCHH
T ss_pred             CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh--cCcCCCCCEEEECCcHH
Confidence            46999999999999999988765   57788887 788877764    32 2223221111  256 8999999986554


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhCCceeee
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~~  343 (363)
                      +      +..++.++.|+|||||++++++. ......+.+.++...++...
T Consensus       196 ~------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~  240 (254)
T 2nxc_A          196 L------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLE  240 (254)
T ss_dssp             H------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred             H------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEE
Confidence            3      46799999999999999999864 33466777777777776543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.10  E-value=2.2e-10  Score=111.60  Aligned_cols=97  Identities=13%  Similarity=0.116  Sum_probs=71.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++..+++.+..  .|+++|.++|+..+.++    |+   +.++....+ .++++++||+|++..+++
T Consensus        51 ~~~VLDiGcGtG~ls~~la~~g~~--~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVE-EVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTT-TCCCSSCEEEEEECCCBT
T ss_pred             cCEEEEcCCCccHHHHHHHhCCCC--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchh-hCCCCCceeEEEEeCchh
Confidence            469999999999999999887541  35566666666665544    33   344443233 356678899999998888


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |+.+ ..+...+.++.|+|||||.+++.
T Consensus       128 ~~~~-~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          128 MLFN-ERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             TBTT-TSHHHHHHHGGGGEEEEEEEESC
T ss_pred             cCCh-HHHHHHHHHHHhhcCCCeEEEEe
Confidence            8764 35678899999999999999864

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.10  E-value=1.1e-10  Score=113.29  Aligned_cols=99  Identities=18%  Similarity=0.265  Sum_probs=68.9

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHH--hcCc---eee-eccccccCCCCCCCcceeeecccc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIF--DRGL---IGM-YHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~--~Rgl---~~~-~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ....+|||+|||+|.++..|++.... ..++..|.+.++..+.  +.++   +.. .+|.   +.++| +||+|++..+|
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~---~~~~p-~~D~v~~~~vl  257 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPG-LQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF---LREVP-HADVHVLKRIL  257 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTT-EEEEEEECHHHHTTCCCCCGGGTTSEEEEECCT---TTCCC-CCSEEEEESCG
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCC-CEEEEecCHHHhhcccccccCCCCCeEEEecCC---CCCCC-CCcEEEEehhc
Confidence            34679999999999999999874211 1355666664443110  0122   222 2332   24566 99999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +|+++. ....+|.++.|+|||||+++|.|.
T Consensus       258 h~~~d~-~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          258 HNWGDE-DSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             GGSCHH-HHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             cCCCHH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence            998753 346899999999999999999863

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.10  E-value=2.2e-10  Score=108.24  Aligned_cols=114  Identities=13%  Similarity=0.169  Sum_probs=83.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.|+..++..+..  .|+++|.+ .+++.+.++    |+   +..+...+.. ++..++||+|++....
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~-~~~~~~fD~Vi~~~p~  202 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD-FPGENIADRILMGYVV  202 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT-CCCCSCEEEEEECCCS
T ss_pred             CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHH-hcccCCccEEEECCch
Confidence            359999999999999999886543  47888988 788877664    33   3233333333 2235899999986332


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcCH-------HHHHHHHHHHHhCCceeeee
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-------EMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-------~~~~~i~~l~~~l~W~~~~~  344 (363)
                             ....++.++.|+|||||++++.+..       +....+.+.++...|+....
T Consensus       203 -------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~  254 (278)
T 2frn_A          203 -------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL  254 (278)
T ss_dssp             -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred             -------hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence                   2245899999999999999997543       45678889999989987663

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.10  E-value=2.2e-10  Score=107.39  Aligned_cols=129  Identities=15%  Similarity=0.286  Sum_probs=87.9

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecc-
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSF-  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~-  290 (363)
                      ..+|||+|||+|.++..|+.. +.  ..++++|.+ .+++.+.++    |+  +.+++...  ..+++ ++||+|+++- 
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~--~~~~~~~~fD~Iv~npP  185 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW--FSALAGQQFAMIVSNPP  185 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST--TGGGTTCCEEEEEECCC
T ss_pred             CCEEEEecCCccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcch--hhhcccCCccEEEECCC
Confidence            358999999999999999853 22  247888988 788877765    32  33333211  12455 8999999973 


Q ss_pred             ------------cccccccc---------CCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceee-ee----
Q 017983          291 ------------LLSDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN-IY----  344 (363)
Q Consensus       291 ------------~l~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~-~~----  344 (363)
                                  +++|.+..         ..+..++.++.|+|||||++++.........+.++++...|+.. ..    
T Consensus       186 y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~~  265 (276)
T 2b3t_A          186 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYG  265 (276)
T ss_dssp             CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTT
T ss_pred             CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecCC
Confidence                        33333211         13477899999999999999998766556677777777666532 21    


Q ss_pred             -cceEEEEEe
Q 017983          345 -HDQFLVGKK  353 (363)
Q Consensus       345 -~~~~li~~K  353 (363)
                       .+++++++|
T Consensus       266 g~~r~~~~~~  275 (276)
T 2b3t_A          266 DNERVTLGRY  275 (276)
T ss_dssp             SSEEEEEEEC
T ss_pred             CCCcEEEEEE
Confidence             456776654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.09  E-value=1.6e-10  Score=113.16  Aligned_cols=97  Identities=23%  Similarity=0.365  Sum_probs=72.7

Q ss_pred             CCCceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhc----Cc---eee-eccccccCCCCCCCcceeee
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GL---IGM-YHDWCESFNTYPRTYDLLHS  288 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~R----gl---~~~-~~d~~e~~lpfp~sFDlVh~  288 (363)
                      ....+|||+|||+|.++..|++.  +..   ++..|.+.+++.+.++    |+   +.. .+|.   +.|+|..||+|++
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~---~~~~p~~~D~v~~  274 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLR---GTLLERPPVAEEARELLTGRGLADRCEILPGDF---FETIPDGADVYLI  274 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT---TTCCCSSCSEEEE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCe---EEEEcCHHHHHHHHHhhhhcCcCCceEEeccCC---CCCCCCCceEEEh
Confidence            44579999999999999999874  233   4556666677776653    32   333 3332   2466778999999


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ..+++++++. ....+|.++.|+|||||+++|.|
T Consensus       275 ~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          275 KHVLHDWDDD-DVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             ESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             hhhhccCCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999998753 33579999999999999999976

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.09  E-value=6.6e-11  Score=106.17  Aligned_cols=117  Identities=21%  Similarity=0.166  Sum_probs=76.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH----H----hcCc--eeeeccccccCCCCC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII----F----DRGL--IGMYHDWCESFNTYP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a----~----~Rgl--~~~~~d~~e~~lpfp-~sFDlVh~  288 (363)
                      ..+|||+|||+|.++..|++..- ...|+++|.+ +|++.+    .    .+++  +..+....+ .+||+ ++ |.|+.
T Consensus        28 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~-~l~~~~~~-d~v~~  104 (218)
T 3mq2_A           28 DDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAE-RLPPLSGV-GELHV  104 (218)
T ss_dssp             SEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCST-TCCSCCCE-EEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchh-hCCCCCCC-CEEEE
Confidence            46999999999999999988521 1257788888 777742    2    1232  333333333 38888 66 77763


Q ss_pred             cc---cc--ccccccCCHHHHHHHHhHhccCCeEEEEEcC------------------HH-HHHHHHHHHHhCCceeee
Q 017983          289 SF---LL--SDVTQRCDIADVAVEMDRILRPGGYVLVQDT------------------LE-MINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       289 ~~---~l--~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~------------------~~-~~~~i~~l~~~l~W~~~~  343 (363)
                      ..   .+  +|+++   ...+|.|+.|+|||||.+++...                  .. ..+.+..+...-.|++.-
T Consensus       105 ~~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~  180 (218)
T 3mq2_A          105 LMPWGSLLRGVLGS---SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD  180 (218)
T ss_dssp             ESCCHHHHHHHHTS---SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred             Eccchhhhhhhhcc---HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence            32   22  14333   25799999999999999999631                  11 233467777777776543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.09  E-value=8.4e-11  Score=106.22  Aligned_cols=92  Identities=12%  Similarity=0.081  Sum_probs=68.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCCCCcceeeeccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYPRTYDLLHSSFLLSDV  295 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~  295 (363)
                      ..+|||+|||+|.++..|++.+.   .++++|.+ .+++.+.++.    .+.......+..++..++||+|++..+++|+
T Consensus        71 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~  147 (231)
T 1vbf_A           71 GQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTL  147 (231)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHHH
Confidence            45999999999999999988652   57788888 8888887762    1223322222223322899999999999876


Q ss_pred             cccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          296 TQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       296 ~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      .         .++.|+|||||++++....
T Consensus       148 ~---------~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          148 L---------CKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             C---------HHHHHTEEEEEEEEEEECS
T ss_pred             H---------HHHHHHcCCCcEEEEEEcC
Confidence            4         3799999999999998653

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.09  E-value=1.3e-10  Score=112.52  Aligned_cols=98  Identities=27%  Similarity=0.469  Sum_probs=71.0

Q ss_pred             CCceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhc----Cc---eeee-ccccccCCCCCCCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GL---IGMY-HDWCESFNTYPRTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~-~d~~e~~lpfp~sFDlVh~~  289 (363)
                      +..+|||+|||+|.++..|++.  .+.   ++.+|.+.+++.+.++    |+   +..+ +|..   -++|..||+|++.
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~D~v~~~  256 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVS---ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFF---EPLPRKADAIILS  256 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTT---SCCSSCEEEEEEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCE---EEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCC---CCCCCCccEEEEc
Confidence            4569999999999999999874  233   4445545677766654    32   2223 3321   2466559999999


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      .+++|+++. ....+|.++.|+|||||+++|.|..
T Consensus       257 ~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          257 FVLLNWPDH-DAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             SCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            999998653 3357999999999999999998754

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.09  E-value=1.4e-10  Score=104.37  Aligned_cols=128  Identities=17%  Similarity=0.142  Sum_probs=82.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-CC-----CCccee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-YP-----RTYDLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-fp-----~sFDlV  286 (363)
                      ..+|||+|||+|.++..|+..-.....|+++|.+ .+++.+.++    |+   +.+++..+...++ ++     ++||+|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            4599999999999999998751001246778888 788877665    32   3333322222222 11     789999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH------------HHHHHHHHH----HhCCceeeee--cceE
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE------------MINKLKPVL----HSLQWSTNIY--HDQF  348 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~------------~~~~i~~l~----~~l~W~~~~~--~~~~  348 (363)
                      ++....      .....++.++.|+|||||++++.|...            ....++++.    ..-+|.....  .+.+
T Consensus       145 ~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~  218 (225)
T 3tr6_A          145 YIDADK------ANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPIGDGL  218 (225)
T ss_dssp             EECSCG------GGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTCE
T ss_pred             EECCCH------HHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEcCCcc
Confidence            975432      235679999999999999999976421            122333333    3344554443  6778


Q ss_pred             EEEEec
Q 017983          349 LVGKKG  354 (363)
Q Consensus       349 li~~K~  354 (363)
                      ++++|+
T Consensus       219 ~~~~k~  224 (225)
T 3tr6_A          219 TLARKK  224 (225)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888875

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.08  E-value=1.1e-10  Score=114.48  Aligned_cols=97  Identities=13%  Similarity=0.206  Sum_probs=71.7

Q ss_pred             CCCceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhcCceee-eccccccCCCCCCCcceeeeccccccc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDRGLIGM-YHDWCESFNTYPRTYDLLHSSFLLSDV  295 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~Rgl~~~-~~d~~e~~lpfp~sFDlVh~~~~l~~~  295 (363)
                      ....+|||+|||+|.++..|++.  ...   ++..|.+.+++.+.++.-+.. .+|. .  -|+|.. |+|++..+||||
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~v~~~~~d~-~--~~~p~~-D~v~~~~vlh~~  274 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSIN---AINFDLPHVIQDAPAFSGVEHLGGDM-F--DGVPKG-DAIFIKWICHDW  274 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCCTTEEEEECCT-T--TCCCCC-SEEEEESCGGGB
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCE---EEEEehHHHHHhhhhcCCCEEEecCC-C--CCCCCC-CEEEEechhhcC
Confidence            34579999999999999999873  233   455566667766655433333 3442 2  367743 999999999999


Q ss_pred             cccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          296 TQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       296 ~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++. ....+|+++.|+|||||+++|.|.
T Consensus       275 ~~~-~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          275 SDE-HCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             CHH-HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CHH-HHHHHHHHHHHHcCCCCEEEEEEe
Confidence            753 456899999999999999999863

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.08  E-value=1.8e-10  Score=102.54  Aligned_cols=92  Identities=13%  Similarity=0.103  Sum_probs=69.0

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      +..+|||+|||+|.++..|++.+.   .|+++|.+ .+++.+.++    |+  +.+.+..... .+.+ ++||+|++..+
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~D~i~~~~~  152 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQ-GWQARAPFDAIIVTAA  152 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGGGCCEEEEEESSB
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCccc-CCccCCCccEEEEccc
Confidence            346999999999999999988743   46777887 788877765    32  3333322222 3345 89999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      ++|+++         ++.|+|||||++++.-..
T Consensus       153 ~~~~~~---------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          153 PPEIPT---------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred             hhhhhH---------HHHHhcccCcEEEEEEcC
Confidence            998763         689999999999998653

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.06  E-value=1.6e-10  Score=102.00  Aligned_cols=127  Identities=14%  Similarity=0.205  Sum_probs=74.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCe-EEEEeecCCcchHHHHHhcCceeeeccccccCCC---------------------
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLW-VMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNT---------------------  278 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~-v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lp---------------------  278 (363)
                      ..+|||+|||+|.++..|+++... ...|+++|.+.+..   ..++.....|. + .++                     
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~---~~~v~~~~~d~-~-~~~~~~~~~~~~i~~~~~~~~~~~   97 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP---IPNVYFIQGEI-G-KDNMNNIKNINYIDNMNNNSVDYK   97 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC---CTTCEEEECCT-T-TTSSCCC-----------CHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC---CCCceEEEccc-c-chhhhhhccccccccccchhhHHH
Confidence            368999999999999999874210 12456667664311   12222222332 2 133                     


Q ss_pred             ----CC-CCcceeeecccccccc----ccC----CHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCce-eee
Q 017983          279 ----YP-RTYDLLHSSFLLSDVT----QRC----DIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWS-TNI  343 (363)
Q Consensus       279 ----fp-~sFDlVh~~~~l~~~~----~~~----~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~-~~~  343 (363)
                          ++ ++||+|+|...+++..    +..    ....+|.++.|+|||||.+++.... +....+....... |. +..
T Consensus        98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~v~~  176 (201)
T 2plw_A           98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQLVHT  176 (201)
T ss_dssp             HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEEEEE
T ss_pred             HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-HheEEE
Confidence                57 8999999987765421    100    0124899999999999999986422 2223344444332 32 222


Q ss_pred             e---------cceEEEEEe
Q 017983          344 Y---------HDQFLVGKK  353 (363)
Q Consensus       344 ~---------~~~~li~~K  353 (363)
                      .         .|..+|+++
T Consensus       177 ~~~~~~r~~s~e~y~v~~~  195 (201)
T 2plw_A          177 TKPKASRNESREIYLVCKN  195 (201)
T ss_dssp             CCCC-----CCEEEEEEEE
T ss_pred             ECCcccCCcCceEEEEEec
Confidence            1         567777775

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.06  E-value=1.4e-10  Score=106.35  Aligned_cols=126  Identities=12%  Similarity=0.119  Sum_probs=86.0

Q ss_pred             ceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCC-CC-CCcceee
Q 017983          222 RNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNT-YP-RTYDLLH  287 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lp-fp-~sFDlVh  287 (363)
                      .+|||+|||+|.++..|+..   +.   .|+.+|.+ ++++.|.++    |+    +.++...+...++ ++ ++||+|+
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~  134 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVF  134 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence            39999999999999998863   23   46778888 788777654    22    2333322223343 54 8999999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH------------HHHHHHHHHHHhCCceeeee------cceEE
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKPVLHSLQWSTNIY------HDQFL  349 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~l~~~l~W~~~~~------~~~~l  349 (363)
                      +.....      +...++.++.|+|||||.+++.+..            .....++++.+.+++.....      .+.++
T Consensus       135 ~d~~~~------~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~  208 (221)
T 3dr5_A          135 GQVSPM------DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLT  208 (221)
T ss_dssp             ECCCTT------THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCEE
T ss_pred             EcCcHH------HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchHH
Confidence            874333      3567999999999999999996431            12335566666666653222      78899


Q ss_pred             EEEeccC
Q 017983          350 VGKKGFW  356 (363)
Q Consensus       350 i~~K~~w  356 (363)
                      +++|.+=
T Consensus       209 ~~~~~~~  215 (221)
T 3dr5_A          209 VVTKALE  215 (221)
T ss_dssp             EEEECCC
T ss_pred             HHHHHHH
Confidence            9999864

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.06  E-value=2.4e-10  Score=104.90  Aligned_cols=97  Identities=14%  Similarity=0.082  Sum_probs=60.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc--chHHHH---Hhc----Cc--eeeeccccccCCCCCCCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP--DTLSII---FDR----GL--IGMYHDWCESFNTYPRTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s--~~L~~a---~~R----gl--~~~~~d~~e~~lpfp~sFDlVh~~  289 (363)
                      ..+|||+|||+|.++..|+.... ...|+++|.+  .|++.|   .++    |+  +......++. +|. ..||.|.+.
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~-l~~-~~~d~v~~i  101 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES-LPF-ELKNIADSI  101 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB-CCG-GGTTCEEEE
T ss_pred             CCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH-hhh-hccCeEEEE
Confidence            46999999999999999985321 1257788888  477766   443    33  2233332332 332 334554443


Q ss_pred             cccccccc-----cCCHHHHHHHHhHhccCCeEEEE
Q 017983          290 FLLSDVTQ-----RCDIADVAVEMDRILRPGGYVLV  320 (363)
Q Consensus       290 ~~l~~~~~-----~~~~~~~L~Em~RVLRPGG~lii  320 (363)
                      .+..+++.     ......+|.|+.|+|||||+++|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            33322221     11235689999999999999999

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.06  E-value=1e-10  Score=113.52  Aligned_cols=96  Identities=16%  Similarity=0.271  Sum_probs=70.3

Q ss_pred             CCceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhcCceee-eccccccCCCCCCCcceeeecccccccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDRGLIGM-YHDWCESFNTYPRTYDLLHSSFLLSDVT  296 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~Rgl~~~-~~d~~e~~lpfp~sFDlVh~~~~l~~~~  296 (363)
                      ...+|||+|||+|.++..|++.  +.   .++..|.+.+++.+.+..-+.. .+|..   -++|. ||+|++..+|+|++
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~v~~~~~d~~---~~~p~-~D~v~~~~~lh~~~  260 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKL---KCIVFDRPQVVENLSGSNNLTYVGGDMF---TSIPN-ADAVLLKYILHNWT  260 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHTTCCCBTTEEEEECCTT---TCCCC-CSEEEEESCGGGSC
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCC---eEEEeeCHHHHhhcccCCCcEEEecccc---CCCCC-ccEEEeehhhccCC
Confidence            3469999999999999999864  23   3556666567766654322332 34421   24555 99999999999997


Q ss_pred             ccCCHHHHHHHHhHhccC---CeEEEEEcC
Q 017983          297 QRCDIADVAVEMDRILRP---GGYVLVQDT  323 (363)
Q Consensus       297 ~~~~~~~~L~Em~RVLRP---GG~lii~D~  323 (363)
                      +. ....+|+++.|+|||   ||+++|.|.
T Consensus       261 d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~  289 (352)
T 1fp2_A          261 DK-DCLRILKKCKEAVTNDGKRGKVTIIDM  289 (352)
T ss_dssp             HH-HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             HH-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            54 234899999999999   999999864

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.05  E-value=1.5e-10  Score=113.46  Aligned_cols=97  Identities=18%  Similarity=0.189  Sum_probs=72.0

Q ss_pred             CCCceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhcCceee-eccccccCCCCCCCcceeeeccccccc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDRGLIGM-YHDWCESFNTYPRTYDLLHSSFLLSDV  295 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~Rgl~~~-~~d~~e~~lpfp~sFDlVh~~~~l~~~  295 (363)
                      ....+|||||||+|.++..|++.  ...   ++..|.+.+++.+.++.-+.. .+|. .  -|+|.. |+|++..+||||
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~v~~~~~D~-~--~~~p~~-D~v~~~~vlh~~  272 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIK---GVNFDLPHVISEAPQFPGVTHVGGDM-F--KEVPSG-DTILMKWILHDW  272 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCCTTEEEEECCT-T--TCCCCC-SEEEEESCGGGS
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCe---EEEecCHHHHHhhhhcCCeEEEeCCc-C--CCCCCC-CEEEehHHhccC
Confidence            34579999999999999999873  233   455666667766655433333 3442 2  277843 999999999999


Q ss_pred             cccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          296 TQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       296 ~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++. +...+|+++.|+|||||+++|.|.
T Consensus       273 ~d~-~~~~~L~~~~~~L~pgG~l~i~e~  299 (364)
T 3p9c_A          273 SDQ-HCATLLKNCYDALPAHGKVVLVQC  299 (364)
T ss_dssp             CHH-HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CHH-HHHHHHHHHHHHcCCCCEEEEEEe
Confidence            753 457899999999999999999864

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.05  E-value=1.7e-10  Score=103.19  Aligned_cols=95  Identities=18%  Similarity=0.079  Sum_probs=66.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|+..-.....|+++|.+ .+++.+.++    |+   +.++...+...+|.. + ||+|++...
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~  135 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD  135 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence            3699999999999999998751101246777887 788777654    32   333332233334554 7 999998732


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                            ..+...++.++.|+|||||.+++.+
T Consensus       136 ------~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          136 ------VFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             ------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             ------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence                  2346789999999999999999865

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.05  E-value=1.7e-10  Score=105.09  Aligned_cols=127  Identities=9%  Similarity=0.091  Sum_probs=91.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ce-ee-eccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LI-GM-YHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~-~~-~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.+|..++...-.+ .+.++|.+ .|++++.++.    .. .+ +.|..+  .+.+.+||+|.+..++|
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~--~~~~~~~DvVLa~k~LH  126 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKES--DVYKGTYDVVFLLKMLP  126 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHH--HHTTSEEEEEEEETCHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccc--cCCCCCcChhhHhhHHH
Confidence            5699999999999999997653233 68899999 8999888763    21 11 223211  23349999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcC-----------HHHHHHHHHHHHhCCceeeee---cceEEEEEe
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LEMINKLKPVLHSLQWSTNIY---HDQFLVGKK  353 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~~~~~i~~l~~~l~W~~~~~---~~~~li~~K  353 (363)
                      |+.+.   +.++..+.+.|||||.||-.+.           ..+...+++.+..--|.+...   .|-+.|.+|
T Consensus       127 lL~~~---~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~nEl~y~~~~  197 (200)
T 3fzg_A          127 VLKQQ---DVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIGNELVYITSG  197 (200)
T ss_dssp             HHHHT---TCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEETTEEEEEECC
T ss_pred             hhhhh---HHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeCceEEEEEec
Confidence            99554   3477799999999999998872           125667777777778876554   455554444

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.04  E-value=1.6e-09  Score=99.32  Aligned_cols=105  Identities=14%  Similarity=0.228  Sum_probs=75.8

Q ss_pred             CceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~  288 (363)
                      ..+|||+|||+|.++..|+..   +.   .++++|.+ ++++.|.++    |+   +...+....  .+++ ++||+|++
T Consensus        94 ~~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~D~v~~  168 (255)
T 3mb5_A           94 GDFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY--EGIEEENVDHVIL  168 (255)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG--GCCCCCSEEEEEE
T ss_pred             CCEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh--hccCCCCcCEEEE
Confidence            469999999999999999876   33   46777888 788887766    32   333332222  3477 89999997


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhCC
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQ  338 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~  338 (363)
                      +     .++   ...++.++.|+|||||++++... .+...++.+.++...
T Consensus       169 ~-----~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g  211 (255)
T 3mb5_A          169 D-----LPQ---PERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK  211 (255)
T ss_dssp             C-----SSC---GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred             C-----CCC---HHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            3     222   34689999999999999998764 445666666666655

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.03  E-value=2.6e-10  Score=102.29  Aligned_cols=98  Identities=9%  Similarity=0.074  Sum_probs=71.8

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      .+|||+|||+|.++..++..+..  .|+++|.+ .|++.+.++    |+  +.++...+...++++ ++||+|++...++
T Consensus        56 ~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           56 AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            59999999999999987776532  57888998 888887664    22  334443333446667 8999999986654


Q ss_pred             cccccCCHHHHHHHHhH--hccCCeEEEEEcCHH
Q 017983          294 DVTQRCDIADVAVEMDR--ILRPGGYVLVQDTLE  325 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~R--VLRPGG~lii~D~~~  325 (363)
                       .   .....++.++.+  +|||||.+++.....
T Consensus       134 -~---~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          134 -R---GLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             -T---TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             -C---CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence             1   345678888865  699999999986543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.03  E-value=4.8e-10  Score=104.38  Aligned_cols=99  Identities=16%  Similarity=0.104  Sum_probs=61.3

Q ss_pred             ccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chH----HHHHhcCce-eeeccccccC--CCCCCCccee
Q 017983          215 AINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTL----SIIFDRGLI-GMYHDWCESF--NTYPRTYDLL  286 (363)
Q Consensus       215 ~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L----~~a~~Rgl~-~~~~d~~e~~--lpfp~sFDlV  286 (363)
                      .+++  ..+|||+|||+|+++..|++.-.....|+++|.+ .|+    +.+.+|..+ ....|.....  ..+.++||+|
T Consensus        73 ~l~~--g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I  150 (232)
T 3id6_C           73 PIRK--GTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVL  150 (232)
T ss_dssp             SCCT--TCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEE
T ss_pred             CCCC--CCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEE
Confidence            3444  4699999999999998887631000135677777 554    455555333 3334421111  1123799999


Q ss_pred             eeccccccccccCCHHHHH-HHHhHhccCCeEEEEE
Q 017983          287 HSSFLLSDVTQRCDIADVA-VEMDRILRPGGYVLVQ  321 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L-~Em~RVLRPGG~lii~  321 (363)
                      ++...+.      +...+| ..+.|+|||||+++++
T Consensus       151 ~~d~a~~------~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          151 YVDIAQP------DQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             EECCCCT------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EecCCCh------hHHHHHHHHHHHhCCCCeEEEEE
Confidence            9885431      233444 5566699999999987

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.03  E-value=5.7e-10  Score=104.57  Aligned_cols=107  Identities=10%  Similarity=0.153  Sum_probs=75.9

Q ss_pred             CceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhc-----Cc--eeeeccccccCCCCC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR-----GL--IGMYHDWCESFNTYP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~R-----gl--~~~~~d~~e~~lpfp-~sFDlVh~  288 (363)
                      ..+|||+|||+|.++..|++.   +.   .|+++|.+ .+++.+.++     |.  +.......+  .+++ ++||+|++
T Consensus       111 ~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~--~~~~~~~fD~Vi~  185 (275)
T 1yb2_A          111 GMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA--DFISDQMYDAVIA  185 (275)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT--TCCCSCCEEEEEE
T ss_pred             cCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchh--ccCcCCCccEEEE
Confidence            469999999999999999875   33   46778887 788877665     42  333332222  3677 89999998


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCce
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWS  340 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~  340 (363)
                           |.++   ...+|.++.|+|||||++++.+... ....+.+.++...|.
T Consensus       186 -----~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~  230 (275)
T 1yb2_A          186 -----DIPD---PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH  230 (275)
T ss_dssp             -----CCSC---GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred             -----cCcC---HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCe
Confidence                 3333   3569999999999999999987654 445555555554454

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.03  E-value=8.2e-10  Score=100.47  Aligned_cols=96  Identities=17%  Similarity=0.116  Sum_probs=63.5

Q ss_pred             CceEEEecccccHHHHHhhcC--CCeEEEEeecCCc-c----hHHHHHhcCceeeecccccc--CCCCC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-D----TLSIIFDRGLIGMYHDWCES--FNTYP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s-~----~L~~a~~Rgl~~~~~d~~e~--~lpfp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|++.  +.  ..|+++|.+ .    +++.+..+..+..+....+.  .+|++ ++||+|++..
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~g~~--~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~  155 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIVGPD--GLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADV  155 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred             CCEEEEEcccCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence            459999999999999999875  11  135677877 4    34555553323333222222  14555 8999999864


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      .     .......++.++.|+|||||+++++-.
T Consensus       156 ~-----~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          156 A-----QPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             C-----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C-----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            4     222234568899999999999999643

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.03  E-value=3.7e-10  Score=109.65  Aligned_cols=97  Identities=19%  Similarity=0.333  Sum_probs=71.4

Q ss_pred             CCCceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhc----Cc---eeee-ccccccCCCCCCCcceeee
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GL---IGMY-HDWCESFNTYPRTYDLLHS  288 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~-~d~~e~~lpfp~sFDlVh~  288 (363)
                      ....+|||+|||+|.++..|++.  +..   ++.+|.+.+++.+.++    |+   +... +|. . ..|+++ +|+|++
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~-~~~~~~-~D~v~~  262 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELD---STILNLPGAIDLVNENAAEKGVADRMRGIAVDI-Y-KESYPE-ADAVLF  262 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCE---EEEEECGGGHHHHHHHHHHTTCTTTEEEEECCT-T-TSCCCC-CSEEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCe---EEEEecHHHHHHHHHHHHhcCCCCCEEEEeCcc-c-cCCCCC-CCEEEE
Confidence            34579999999999999999875  233   4555666678777654    33   3333 332 2 235553 399999


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ..+++|+++. ....+|.++.|+|||||+++|.|
T Consensus       263 ~~vlh~~~d~-~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          263 CRILYSANEQ-LSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             ESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             echhccCCHH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence            9999998752 36789999999999999999987

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.02  E-value=9.9e-11  Score=100.00  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=67.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCC-C---CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTY-P---RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpf-p---~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..++..+..   ++++|.+ ++++.+.++    ++ +..++..+...++. +   ++||+|++..
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            358999999999999999987644   7888988 788877764    21 22333222222322 2   3899999987


Q ss_pred             ccccccccCCHHHHHHHHh--HhccCCeEEEEEcCH
Q 017983          291 LLSDVTQRCDIADVAVEMD--RILRPGGYVLVQDTL  324 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~--RVLRPGG~lii~D~~  324 (363)
                      .++  ..   .+.++.++.  |+|||||.+++....
T Consensus       119 ~~~--~~---~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          119 PYA--MD---LAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             CTT--SC---TTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             CCc--hh---HHHHHHHHHhhcccCCCcEEEEEeCC
Confidence            765  22   234666666  999999999998653

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.02  E-value=1.2e-09  Score=99.91  Aligned_cols=108  Identities=13%  Similarity=0.079  Sum_probs=76.5

Q ss_pred             CceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhc-----Cc--eeeeccccccCCCCC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR-----GL--IGMYHDWCESFNTYP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~R-----gl--~~~~~d~~e~~lpfp-~sFDlVh~  288 (363)
                      ..+|||+|||+|.++..|+..   +.   .++++|.+ .+++.+.++     |.  +...+.... ..+++ ++||+|++
T Consensus        97 ~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~-~~~~~~~~~D~v~~  172 (258)
T 2pwy_A           97 GMRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLE-EAELEEAAYDGVAL  172 (258)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGG-GCCCCTTCEEEEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchh-hcCCCCCCcCEEEE
Confidence            459999999999999999875   33   46777877 788877765     42  333332222 24688 89999997


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCce
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWS  340 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~  340 (363)
                      .     .++   ...+|.++.|+|||||++++.+... .+.++.+.++...|.
T Consensus       173 ~-----~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~  217 (258)
T 2pwy_A          173 D-----LME---PWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR  217 (258)
T ss_dssp             E-----SSC---GGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred             C-----CcC---HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence            3     222   3469999999999999999987654 455555555555554

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.02  E-value=1.7e-10  Score=99.97  Aligned_cols=98  Identities=16%  Similarity=0.181  Sum_probs=69.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..++..+.  ..|+++|.+ .+++.+.++    |+   +.++...+...++.. ++||+|++...
T Consensus        32 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~  109 (177)
T 2esr_A           32 GGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP  109 (177)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence            45999999999999999988753  257888988 788877664    22   233332223334443 78999999866


Q ss_pred             cccccccCCHHHHHHHHh--HhccCCeEEEEEcCH
Q 017983          292 LSDVTQRCDIADVAVEMD--RILRPGGYVLVQDTL  324 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~--RVLRPGG~lii~D~~  324 (363)
                      ++. .   ..+.++.++.  |+|||||.+++....
T Consensus       110 ~~~-~---~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          110 YAK-E---TIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             SHH-H---HHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCc-c---hHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            542 1   2356777776  999999999998654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.01  E-value=1.1e-09  Score=92.76  Aligned_cols=95  Identities=17%  Similarity=0.137  Sum_probs=63.2

Q ss_pred             CceEEEecccccHHHHHhhcC-C--CeEEEEeecCCcchHHHHHhcCceeeeccccccCCC--------CC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-P--LWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNT--------YP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~--v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lp--------fp-~sFDlVh~  288 (363)
                      ..+|||+|||+|.++..|++. +  ..   ++++|.+.+++.   ........|. + ..+        ++ ++||+|++
T Consensus        23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~---v~~~D~~~~~~~---~~~~~~~~d~-~-~~~~~~~~~~~~~~~~~D~i~~   94 (180)
T 1ej0_A           23 GMTVVDLGAAPGGWSQYVVTQIGGKGR---IIACDLLPMDPI---VGVDFLQGDF-R-DELVMKALLERVGDSKVQVVMS   94 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCE---EEEEESSCCCCC---TTEEEEESCT-T-SHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeEEEeCCCCCHHHHHHHHHhCCCCe---EEEEECcccccc---CcEEEEEccc-c-cchhhhhhhccCCCCceeEEEE
Confidence            459999999999999998875 2  33   445554433221   1221122332 2 234        67 89999999


Q ss_pred             cccccccccc--CC------HHHHHHHHhHhccCCeEEEEEcC
Q 017983          289 SFLLSDVTQR--CD------IADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       289 ~~~l~~~~~~--~~------~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ...+++..+.  ..      ...++.++.|+|||||.+++.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            8887754321  00      15799999999999999999753

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.01  E-value=1.8e-10  Score=106.76  Aligned_cols=125  Identities=10%  Similarity=0.056  Sum_probs=78.3

Q ss_pred             CceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHH----hcCc---eeeeccccccCCCC------CCCc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIF----DRGL---IGMYHDWCESFNTY------PRTY  283 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~----~Rgl---~~~~~d~~e~~lpf------p~sF  283 (363)
                      .++|||+|||+|.++..|++.   +..   |+++|.+ ++++.|.    ..|+   +.++...+...++.      .++|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~---v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f  137 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQ---VITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF  137 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCE---EEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence            469999999999999999873   333   4555655 4544333    3343   33333223223443      4789


Q ss_pred             ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH------------HHHHHHHHHH----HhCCceeeee--c
Q 017983          284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKPVL----HSLQWSTNIY--H  345 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~l~----~~l~W~~~~~--~  345 (363)
                      |+|++....      .+...++.++.|+|||||.+++.|..            .....++++.    ..-+++..+.  .
T Consensus       138 D~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~  211 (242)
T 3r3h_A          138 DFIFIDADK------TNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIA  211 (242)
T ss_dssp             EEEEEESCG------GGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSS
T ss_pred             eEEEEcCCh------HHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEcc
Confidence            999987542      23567999999999999999996532            1222344433    3334554443  6


Q ss_pred             ceEEEEEec
Q 017983          346 DQFLVGKKG  354 (363)
Q Consensus       346 ~~~li~~K~  354 (363)
                      +.+++++|+
T Consensus       212 dG~~~~~k~  220 (242)
T 3r3h_A          212 DGMFLVQPI  220 (242)
T ss_dssp             SCEEEEEEC
T ss_pred             CceEEEEEc
Confidence            778888874

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.00  E-value=3.5e-10  Score=109.85  Aligned_cols=99  Identities=13%  Similarity=0.138  Sum_probs=71.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++..|++.+.. ..|+++|.+ .|++.+.++    ++ ..++..   ..++++ ++||+|+|+..|+
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~---d~~~~~~~~fD~Iv~~~~~~  272 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPK-IRLTLCDVSAPAVEASRATLAANGVEGEVFAS---NVFSEVKGRFDMIISNPPFH  272 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTT-CBCEEEESBHHHHHHHHHHHHHTTCCCEEEEC---STTTTCCSCEEEEEECCCCC
T ss_pred             CCeEEEecCccCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCEEEEc---cccccccCCeeEEEECCCcc
Confidence            358999999999999999875311 146778888 788877765    32 122222   234566 9999999999887


Q ss_pred             ccc--ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          294 DVT--QRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       294 ~~~--~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +..  +......++.++.|+|||||.+++...
T Consensus       273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            521  123457899999999999999999754

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.00  E-value=1.5e-10  Score=108.79  Aligned_cols=70  Identities=29%  Similarity=0.365  Sum_probs=59.4

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.|++.|+++ -.+.+.+.+++.+||++++||+|+|+.++ ||.+ ...++.|+.|||||||.|++...
T Consensus        67 vD~s~~ml~~a~~~-~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~~-~~~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A           67 VDPGEAQIRQALRH-PRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWFD-LDRFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             EESCHHHHHTCCCC-TTEEEEECCTTCCCCCSSCEEEEEECSCC-TTCC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeCcHHhhhhhhhc-CCceeehhhhhhhcccCCcccEEEEeeeh-hHhh-HHHHHHHHHHHcCCCCEEEEEEC
Confidence            38999999998654 24667777899999999999999999887 6664 55899999999999999998865

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.00  E-value=3.2e-10  Score=104.43  Aligned_cols=103  Identities=15%  Similarity=0.114  Sum_probs=71.2

Q ss_pred             CceEEEecccccHHHHHhhcC--CCeEEEEeecCCc-chHHHHHhc-------Cc-------------------------
Q 017983          221 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR-------GL-------------------------  265 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s-~~L~~a~~R-------gl-------------------------  265 (363)
                      ..+|||+|||+|.++..|+..  . ....|+++|.+ .+++.|.++       ++                         
T Consensus        52 ~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           52 PVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            468999999999999998865  2 13468899998 888877643       21                         


Q ss_pred             ---ee-------------ee-ccccccCCCC----C-CCcceeeecccccccccc------CCHHHHHHHHhHhccCCeE
Q 017983          266 ---IG-------------MY-HDWCESFNTY----P-RTYDLLHSSFLLSDVTQR------CDIADVAVEMDRILRPGGY  317 (363)
Q Consensus       266 ---~~-------------~~-~d~~e~~lpf----p-~sFDlVh~~~~l~~~~~~------~~~~~~L~Em~RVLRPGG~  317 (363)
                         +.             +. +|. ...++.    + ++||+|+|+..+.+....      .....++.++.|+|||||+
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  209 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADV-FDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  209 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCT-TCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             hhhhhhhccccccccccceeeccc-ccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence               11             22 232 111111    5 589999998766654321      2346899999999999999


Q ss_pred             EEEEcCHH
Q 017983          318 VLVQDTLE  325 (363)
Q Consensus       318 lii~D~~~  325 (363)
                      +++.+...
T Consensus       210 l~~~~~~~  217 (250)
T 1o9g_A          210 IAVTDRSR  217 (250)
T ss_dssp             EEEEESSS
T ss_pred             EEEeCcch
Confidence            99976543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.99  E-value=4.6e-10  Score=111.45  Aligned_cols=99  Identities=17%  Similarity=0.204  Sum_probs=74.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ .+++.+.++    ++ +.++...+. ..+++ ++||+|+|+..|+
T Consensus       234 ~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~-~~~~~~~~fD~Ii~npp~~  309 (381)
T 3dmg_A          234 GRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVD-EALTEEARFDIIVTNPPFH  309 (381)
T ss_dssp             TCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTT-TTSCTTCCEEEEEECCCCC
T ss_pred             CCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchh-hccccCCCeEEEEECCchh
Confidence            46999999999999999998864   57788888 788777664    22 233333233 24556 8999999998888


Q ss_pred             cccc--cCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          294 DVTQ--RCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       294 ~~~~--~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +...  ......++.++.|+|||||.++|...
T Consensus       310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n  341 (381)
T 3dmg_A          310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSN  341 (381)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence            6221  22457899999999999999999754

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.99  E-value=7.8e-10  Score=99.97  Aligned_cols=130  Identities=15%  Similarity=0.130  Sum_probs=81.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-----CC-CCccee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-----YP-RTYDLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-----fp-~sFDlV  286 (363)
                      ..+|||+|||+|.++..|+..-.....|+++|.+ .+++.|.++    |+   +.++...+...++     +. ++||+|
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V  138 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  138 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence            4699999999999999998731001246778888 788877764    32   3333322222233     22 699999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH--HHHHHHHHHHhCCceeeee---------cceEEEEEec
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE--MINKLKPVLHSLQWSTNIY---------HDQFLVGKKG  354 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~--~~~~i~~l~~~l~W~~~~~---------~~~~li~~K~  354 (363)
                      ++....+++.+   ...++.++ |+|||||.+++.+...  .-..++.+...-.++....         .+.+.++.++
T Consensus       139 ~~d~~~~~~~~---~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          139 FLDHWKDRYLP---DTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             EECSCGGGHHH---HHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             EEcCCcccchH---HHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            99877776542   34577777 9999999999976421  1122233333445555433         4567777664

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.98  E-value=3.6e-11  Score=109.50  Aligned_cols=94  Identities=14%  Similarity=0.171  Sum_probs=70.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|+..+.   .|+++|.+ .|++.+.++    |+   +.+++..... ++ + ++||+|+++..
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~~  153 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSPP  153 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECCC
T ss_pred             CCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECCC
Confidence            46999999999999999998863   47788888 788877655    32   3333322222 33 4 89999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ++|....   ...+.|+.|+|||||.+++..
T Consensus       154 ~~~~~~~---~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          154 WGGPDYA---TAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             CSSGGGG---GSSSBCTTTSCSSCHHHHHHH
T ss_pred             cCCcchh---hhHHHHHHhhcCCcceeHHHH
Confidence            9987654   237789999999999976654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.98  E-value=3.1e-10  Score=114.19  Aligned_cols=104  Identities=6%  Similarity=0.012  Sum_probs=72.1

Q ss_pred             hhccccCCCCCceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhc-----------Cc----eeeecccc
Q 017983          211 VGGLAINWSSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR-----------GL----IGMYHDWC  273 (363)
Q Consensus       211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~R-----------gl----~~~~~d~~  273 (363)
                      ++.+.+.+  ..+|||+|||+|.++..++. .+..  .++++|.+ .++++|.+.           |+    +.+++...
T Consensus       166 l~~l~l~~--gd~VLDLGCGtG~l~l~lA~~~g~~--kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~  241 (438)
T 3uwp_A          166 IDEIKMTD--DDLFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  241 (438)
T ss_dssp             HHHHCCCT--TCEEEEESCTTSHHHHHHHHHCCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred             HHhcCCCC--CCEEEEeCCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence            33444544  45999999999999988875 3432  36788888 777777541           22    33333322


Q ss_pred             ccCCCCC---CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          274 ESFNTYP---RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       274 e~~lpfp---~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      . .+||+   .+||+|+++..+. .+   ++...|.|+.|+|||||.|++++.
T Consensus       242 ~-~lp~~d~~~~aDVVf~Nn~~F-~p---dl~~aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          242 L-SEEWRERIANTSVIFVNNFAF-GP---EVDHQLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             T-SHHHHHHHHTCSEEEECCTTC-CH---HHHHHHHHHHTTSCTTCEEEESSC
T ss_pred             c-CCccccccCCccEEEEccccc-Cc---hHHHHHHHHHHcCCCCcEEEEeec
Confidence            2 25564   4899999976653 22   467899999999999999999865

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.97  E-value=9.6e-11  Score=117.48  Aligned_cols=109  Identities=13%  Similarity=0.183  Sum_probs=75.6

Q ss_pred             CceEEEeccc------ccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-------CCc
Q 017983          221 VRNVMDMNAS------YGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-------RTY  283 (363)
Q Consensus       221 ~r~VLDvGCG------~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-------~sF  283 (363)
                      ..+|||+|||      +|+.+..++..   +.   .|+++|.+ +|..  .... +.++...++ .+||+       ++|
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a---~V~GVDiSp~m~~--~~~r-I~fv~GDa~-dlpf~~~l~~~d~sF  289 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG---QIYGLDIMDKSHV--DELR-IRTIQGDQN-DAEFLDRIARRYGPF  289 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC---EEEEEESSCCGGG--CBTT-EEEEECCTT-CHHHHHHHHHHHCCE
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC---EEEEEECCHHHhh--cCCC-cEEEEeccc-ccchhhhhhcccCCc
Confidence            4799999999      77766666642   23   46777887 6631  1112 333332233 35664       899


Q ss_pred             ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH------------------HHHHHHHHHHHhCCce
Q 017983          284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------------EMINKLKPVLHSLQWS  340 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------------~~~~~i~~l~~~l~W~  340 (363)
                      |+|+|.. .+++.   +...+|.|+.|+|||||+++|.|..                  .+++.++++.+.+.|.
T Consensus       290 DlVisdg-sH~~~---d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~  360 (419)
T 3sso_A          290 DIVIDDG-SHINA---HVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQ  360 (419)
T ss_dssp             EEEEECS-CCCHH---HHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGG
T ss_pred             cEEEECC-cccch---hHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhccc
Confidence            9999874 34433   4578999999999999999998643                  3688899999888875

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.97  E-value=4.2e-10  Score=100.50  Aligned_cols=94  Identities=17%  Similarity=0.082  Sum_probs=67.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC--CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP--RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp--~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++.......++++|.+ ++++.+.++    |+  +........  .+++  ++||+|++..+
T Consensus        78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD~v~~~~~  155 (215)
T 2yxe_A           78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGT--LGYEPLAPYDRIYTTAA  155 (215)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGG--GCCGGGCCEEEEEESSB
T ss_pred             CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc--cCCCCCCCeeEEEECCc
Confidence            4599999999999999988743100146777887 788887765    22  222322222  2343  78999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~  325 (363)
                      ++|+.         .++.|+|||||++++.....
T Consensus       156 ~~~~~---------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          156 GPKIP---------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             BSSCC---------HHHHHTEEEEEEEEEEESSS
T ss_pred             hHHHH---------HHHHHHcCCCcEEEEEECCC
Confidence            99764         48999999999999986543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.97  E-value=1.6e-09  Score=97.46  Aligned_cols=97  Identities=13%  Similarity=0.095  Sum_probs=66.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-CC----CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-YP----RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-fp----~sFDlVh  287 (363)
                      ..+|||+|||+|.++..|++.--....|+++|.+ .+++.+.++    |+   +.++...+...++ ++    .+||+|+
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~  138 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF  138 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence            4699999999999999998861101246788887 788777654    33   3333222222222 21    5799999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +.....      ....++.++.|+|||||.+++.+.
T Consensus       139 ~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          139 IDADKQ------NNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             ECSCGG------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             EcCCcH------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence            875533      346799999999999999998653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.97  E-value=2.1e-09  Score=106.34  Aligned_cols=130  Identities=13%  Similarity=0.112  Sum_probs=82.8

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-----eeeeccccccCCCCC-CCcceeeecc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-----IGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-----~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      .+|||+|||+|.++..++.... ...|+++|.+ .+++.+.++    |+     +..+...+  ..+++ ++||+|+|+-
T Consensus       224 ~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~--~~~~~~~~fD~Ii~np  300 (375)
T 4dcm_A          224 GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA--LSGVEPFRFNAVLCNP  300 (375)
T ss_dssp             SEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECST--TTTCCTTCEEEEEECC
T ss_pred             CeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechh--hccCCCCCeeEEEECC
Confidence            6999999999999999987631 1246778888 788776654    22     22233222  23567 8999999998


Q ss_pred             ccccccc--cCCHHHHHHHHhHhccCCeEEEEEcCH--HHHHHHHHHHHhCCceeeeecceEEEEEeccC
Q 017983          291 LLSDVTQ--RCDIADVAVEMDRILRPGGYVLVQDTL--EMINKLKPVLHSLQWSTNIYHDQFLVGKKGFW  356 (363)
Q Consensus       291 ~l~~~~~--~~~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~l~~~l~W~~~~~~~~~li~~K~~w  356 (363)
                      .|++...  ......++.++.|+|||||.++|....  .....++++..  ..+....+.++-|.+-.+=
T Consensus       301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg--~~~~~a~~~~F~V~~~~~~  368 (375)
T 4dcm_A          301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG--NCTTIATNNKFVVLKAVKL  368 (375)
T ss_dssp             CC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--CCEEEEECSSEEEEEEECC
T ss_pred             CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC--CEEEEeeCCCEEEEEEcCc
Confidence            8875321  222357899999999999999996432  23344444333  2334444566666655443

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.96  E-value=4.1e-10  Score=104.04  Aligned_cols=111  Identities=16%  Similarity=0.189  Sum_probs=74.0

Q ss_pred             ceEEEecccccHHHHHhhcC------CCeEEEEeecCCc-chHHHHHhcC-ceeeeccccccC--CCCC-C-Ccceeeec
Q 017983          222 RNVMDMNASYGGFAAALIDQ------PLWVMNVVPIDAP-DTLSIIFDRG-LIGMYHDWCESF--NTYP-R-TYDLLHSS  289 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~------~v~v~~v~~~d~s-~~L~~a~~Rg-l~~~~~d~~e~~--lpfp-~-sFDlVh~~  289 (363)
                      .+|||+|||+|.+++.|++.      +.   .|+++|.+ .|++.|...+ -+.++...+...  +++. + +||+|++.
T Consensus        83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~---~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d  159 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAWFRDLTKIMGIDC---QVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID  159 (236)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHTTCCC---EEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred             CEEEEEeCCCCHHHHHHHHhhhhcCCCC---EEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence            59999999999999998864      23   46677777 6766654321 133333223322  3554 3 79999986


Q ss_pred             cccccccccCCHHHHHHHHhH-hccCCeEEEEEcCHHH-----HHHHHHHHHhC--Ccee
Q 017983          290 FLLSDVTQRCDIADVAVEMDR-ILRPGGYVLVQDTLEM-----INKLKPVLHSL--QWST  341 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~R-VLRPGG~lii~D~~~~-----~~~i~~l~~~l--~W~~  341 (363)
                      ..  |.    +...+|.|+.| +|||||++++.|....     ...+.++.+..  .++.
T Consensus       160 ~~--~~----~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~  213 (236)
T 2bm8_A          160 NA--HA----NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM  213 (236)
T ss_dssp             SS--CS----SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred             Cc--hH----hHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence            54  31    46789999998 9999999999874221     23566666655  4544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.96  E-value=4.5e-10  Score=97.47  Aligned_cols=98  Identities=12%  Similarity=0.123  Sum_probs=68.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccC---CCCC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESF---NTYP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~---lpfp-~sFDlVh~  288 (363)
                      ..+|||+|||+|.++..++..+..  .|+++|.+ .+++.+.++    ++   +.+++..+...   ++++ ++||+|++
T Consensus        45 ~~~vLD~GcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           45 GGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEeCCccCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            459999999999999988876532  47788887 788777654    22   33333222221   2334 89999999


Q ss_pred             ccccccccccCCHHHHHHHH--hHhccCCeEEEEEcCH
Q 017983          289 SFLLSDVTQRCDIADVAVEM--DRILRPGGYVLVQDTL  324 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D~~  324 (363)
                      ...++.    .....++.++  .|+|||||.+++....
T Consensus       123 ~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          123 DPPYAK----QEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             CCCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCCCc----hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            877542    2346677777  9999999999997543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.96  E-value=4.5e-10  Score=107.74  Aligned_cols=93  Identities=17%  Similarity=0.105  Sum_probs=67.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|++.......|+++|.+ ++++.+.++    |+  +.+....... .+.+ ++||+|++..++
T Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~-~~~~~~~fD~Iv~~~~~  154 (317)
T 1dl5_A           76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY-GVPEFSPYDVIFVTVGV  154 (317)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGGGCCEEEEEECSBB
T ss_pred             cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh-ccccCCCeEEEEEcCCH
Confidence            4699999999999999998753211136777887 788887766    43  3333322332 2334 899999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +|+.         .++.|+|||||.+++...
T Consensus       155 ~~~~---------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          155 DEVP---------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             SCCC---------HHHHHHEEEEEEEEEEBC
T ss_pred             HHHH---------HHHHHhcCCCcEEEEEEC
Confidence            9865         578999999999999854

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.95  E-value=3.4e-10  Score=109.99  Aligned_cols=95  Identities=15%  Similarity=0.266  Sum_probs=68.2

Q ss_pred             CceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhcCceee-eccccccCCCCCCCcceeeeccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDRGLIGM-YHDWCESFNTYPRTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~Rgl~~~-~~d~~e~~lpfp~sFDlVh~~~~l~~~~~  297 (363)
                      ..+|||+|||+|.++..|++.  ...   ++..|.+.+++.+.+..-+.. .+|..   -|+| +||+|++..+|+|+++
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~v~~~~~d~~---~~~~-~~D~v~~~~vlh~~~d  266 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLK---CTVFDQPQVVGNLTGNENLNFVGGDMF---KSIP-SADAVLLKWVLHDWND  266 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSE---EEEEECHHHHSSCCCCSSEEEEECCTT---TCCC-CCSEEEEESCGGGSCH
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCe---EEEeccHHHHhhcccCCCcEEEeCccC---CCCC-CceEEEEcccccCCCH
Confidence            469999999999999999874  233   445565556655543211322 33422   2555 5999999999999975


Q ss_pred             cCCHHHHHHHHhHhccC---CeEEEEEcC
Q 017983          298 RCDIADVAVEMDRILRP---GGYVLVQDT  323 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRP---GG~lii~D~  323 (363)
                      . ....+|+++.|+|||   ||+++|.|.
T Consensus       267 ~-~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          267 E-QSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             H-HHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             H-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            3 235899999999999   999999763

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.95  E-value=6.3e-10  Score=101.74  Aligned_cols=130  Identities=11%  Similarity=0.092  Sum_probs=83.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC--------------
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT--------------  278 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp--------------  278 (363)
                      ..+|||+|||+|.++..|+........|+++|.+ .+++.+.++    |+   +.+........++              
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  140 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD  140 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence            4599999999999999998741101246777887 788777665    32   2222211111122              


Q ss_pred             C--C-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC------------HHHHHHH----HHHHHhCCc
Q 017983          279 Y--P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT------------LEMINKL----KPVLHSLQW  339 (363)
Q Consensus       279 f--p-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~------------~~~~~~i----~~l~~~l~W  339 (363)
                      |  + ++||+|++.....      ....++.++.|+|||||.+++.+.            ......+    +.+...-.+
T Consensus       141 f~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (239)
T 2hnk_A          141 FAFGPSSIDLFFLDADKE------NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLV  214 (239)
T ss_dssp             TCCSTTCEEEEEECSCGG------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTE
T ss_pred             ccCCCCCcCEEEEeCCHH------HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCe
Confidence            2  2 6899999885543      345799999999999999999762            1122223    333444556


Q ss_pred             eeeee--cceEEEEEeccC
Q 017983          340 STNIY--HDQFLVGKKGFW  356 (363)
Q Consensus       340 ~~~~~--~~~~li~~K~~w  356 (363)
                      .+...  .+.+.+++|++=
T Consensus       215 ~~~~~p~~~g~~~~~~~~~  233 (239)
T 2hnk_A          215 DVSLVPIADGVSLVRKRLE  233 (239)
T ss_dssp             EEEEECSTTCEEEEEECCC
T ss_pred             EEEEEEcCCceEeeeehhh
Confidence            65444  677999999864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.95  E-value=2e-09  Score=97.15  Aligned_cols=95  Identities=14%  Similarity=0.085  Sum_probs=61.5

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccC---CCCCCCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESF---NTYPRTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~---lpfp~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++. +.. ..|+++|.+ .|++.+.++.    -+..+....+..   .+++++||+|++...
T Consensus        74 ~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~  152 (227)
T 1g8a_A           74 GKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA  152 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred             CCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence            459999999999999999864 210 135677877 6766554431    122222222221   223478999997644


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                           .......++.++.|+|||||++++.
T Consensus       153 -----~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          153 -----QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             -----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence                 1122234599999999999999996

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.95  E-value=3.8e-09  Score=98.65  Aligned_cols=118  Identities=11%  Similarity=0.078  Sum_probs=80.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-------c---eeeeccccccCC------CCC-CC
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------L---IGMYHDWCESFN------TYP-RT  282 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-------l---~~~~~d~~e~~l------pfp-~s  282 (363)
                      ..+|||+|||+|.++..|+.+.- ...|+++|.+ .+++.|.++-       +   +.+++......+      +++ ++
T Consensus        37 ~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  115 (260)
T 2ozv_A           37 ACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH  115 (260)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred             CCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence            46999999999999999987531 1357888988 7888776642       2   333443333221      366 89


Q ss_pred             cceeeeccccccc---------------cccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCce
Q 017983          283 YDLLHSSFLLSDV---------------TQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS  340 (363)
Q Consensus       283 FDlVh~~~~l~~~---------------~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~  340 (363)
                      ||+|+++--+...               ...+.++.++.++.|+|||||++++.-..+.+..+.+.++.. |.
T Consensus       116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~  187 (260)
T 2ozv_A          116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FG  187 (260)
T ss_dssp             EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EE
T ss_pred             cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CC
Confidence            9999997322211               123457889999999999999999987766666676666653 54

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.95  E-value=1.5e-10  Score=109.58  Aligned_cols=94  Identities=12%  Similarity=0.072  Sum_probs=58.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCc--------eeee--ccccccCCCCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGL--------IGMY--HDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl--------~~~~--~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      ..+|||+|||+|+|+..|++. ..   |+++|.+.|+..+.++..        +..+  ..   ....++ ++||+|+|.
T Consensus        75 g~~VLDlGcGtG~~s~~la~~-~~---V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~---D~~~l~~~~fD~V~sd  147 (265)
T 2oxt_A           75 TGRVVDLGCGRGGWSYYAASR-PH---VMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRV---DIHTLPVERTDVIMCD  147 (265)
T ss_dssp             CEEEEEESCTTSHHHHHHHTS-TT---EEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSC---CTTTSCCCCCSEEEEC
T ss_pred             CCEEEEeCcCCCHHHHHHHHc-Cc---EEEEECchhhhhhhhhhhhhhccCCCeEEEeccc---CHhHCCCCCCcEEEEe
Confidence            469999999999999999886 33   344444433221111111        1222  21   123355 999999998


Q ss_pred             ccccccccc--CCH--HHHHHHHhHhccCCe--EEEEEc
Q 017983          290 FLLSDVTQR--CDI--ADVAVEMDRILRPGG--YVLVQD  322 (363)
Q Consensus       290 ~~l~~~~~~--~~~--~~~L~Em~RVLRPGG--~lii~D  322 (363)
                      .+ .+..+.  +..  ..+|.++.|+|||||  .|++..
T Consensus       148 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          148 VG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             CC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             Cc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            76 332221  001  138999999999999  999864

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.92  E-value=3.4e-09  Score=98.52  Aligned_cols=108  Identities=16%  Similarity=0.202  Sum_probs=73.3

Q ss_pred             CceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhc-----C----ceeeeccccccCCCCC-CCccee
Q 017983          221 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR-----G----LIGMYHDWCESFNTYP-RTYDLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~R-----g----l~~~~~d~~e~~lpfp-~sFDlV  286 (363)
                      ..+|||+|||+|.++.+|+..   +.   .++++|.+ .+++.+.++     |    .+...+.... ..+++ ++||+|
T Consensus       100 ~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~-~~~~~~~~~D~v  175 (280)
T 1i9g_A          100 GARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA-DSELPDGSVDRA  175 (280)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG-GCCCCTTCEEEE
T ss_pred             CCEEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH-hcCCCCCceeEE
Confidence            459999999999999999874   33   46777887 788777665     3    1333332222 25777 899999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHh-CCce
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHS-LQWS  340 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~-l~W~  340 (363)
                      ++.     .++   ...+|.++.|+|||||++++.... +.+.++...+.. ..|.
T Consensus       176 ~~~-----~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~  223 (280)
T 1i9g_A          176 VLD-----MLA---PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  223 (280)
T ss_dssp             EEE-----SSC---GGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             EEC-----CcC---HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence            983     222   245999999999999999997653 334444443333 4443

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.92  E-value=3.2e-10  Score=98.50  Aligned_cols=73  Identities=19%  Similarity=0.246  Sum_probs=62.2

Q ss_pred             CCCCHHHHHHHHHcC-CCceeeecccCCCCC---CCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERG-IPAILSVIGTQKLTF---PDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg-~p~~~~~~~~~~LPf---pd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.+++.|+++- -.+.+.+.+++.+|+   ++++||+|+|+.+++|...+...+|.|+.|+|||||+|++..|
T Consensus        26 vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           26 VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            478899999999984 246777788888888   9999999999998877635577899999999999999999755

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.92  E-value=1.8e-10  Score=109.70  Aligned_cols=94  Identities=12%  Similarity=-0.033  Sum_probs=59.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCc--------eeee--ccccccCCCCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGL--------IGMY--HDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl--------~~~~--~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      ..+|||+|||+|+|+..|++. ..   |+++|.+.|+..+.++..        +..+  ....+   .+| ++||+|+|.
T Consensus        83 g~~VLDlGcGtG~~s~~la~~-~~---V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~---~l~~~~fD~Vvsd  155 (276)
T 2wa2_A           83 KGTVVDLGCGRGSWSYYAASQ-PN---VREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVT---KMEPFQADTVLCD  155 (276)
T ss_dssp             CEEEEEESCTTCHHHHHHHTS-TT---EEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGG---GCCCCCCSEEEEC
T ss_pred             CCEEEEeccCCCHHHHHHHHc-CC---EEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHh---hCCCCCcCEEEEC
Confidence            469999999999999999887 33   344455544322222211        1222  22222   245 899999998


Q ss_pred             ccccccccc--CCH--HHHHHHHhHhccCCe--EEEEEc
Q 017983          290 FLLSDVTQR--CDI--ADVAVEMDRILRPGG--YVLVQD  322 (363)
Q Consensus       290 ~~l~~~~~~--~~~--~~~L~Em~RVLRPGG--~lii~D  322 (363)
                      .+ .+..+.  +..  ..+|.++.|+|||||  .|++..
T Consensus       156 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          156 IG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             CC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            76 332211  001  137999999999999  999864

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.91  E-value=9.1e-10  Score=100.00  Aligned_cols=95  Identities=15%  Similarity=0.214  Sum_probs=68.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCC---CCCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTY---PRTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpf---p~sFDlVh~~  289 (363)
                      ..+|||+|||+|.++..|+.... ...|+++|.+ .+++.|.++    |+   +.+........++.   +++||+|++.
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  133 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID  133 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence            45999999999999999987521 1246788888 788887766    32   33333222222332   3789999997


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ...+      ....++.++.|+|||||.+++.+
T Consensus       134 ~~~~------~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          134 AAKG------QYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             GGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred             CCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence            6644      45779999999999999999975

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.90  E-value=2.8e-09  Score=96.06  Aligned_cols=128  Identities=15%  Similarity=0.059  Sum_probs=80.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-CC-----CCccee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-YP-----RTYDLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-fp-----~sFDlV  286 (363)
                      ..+|||+|||+|.++..|+..-.....++.+|.+ .+++.+.++    |+   +.++...+...++ ++     ++||+|
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  149 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  149 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence            4699999999999999998741101246777777 777777654    32   3333221211111 11     689999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH------------HHHHHHHH----HHHhCCceeeee--cceE
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKP----VLHSLQWSTNIY--HDQF  348 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~----l~~~l~W~~~~~--~~~~  348 (363)
                      ++...      ......++.++.|+|||||.+++.+..            .....+++    +...-++.....  .+.+
T Consensus       150 ~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dGl  223 (229)
T 2avd_A          150 VVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGL  223 (229)
T ss_dssp             EECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTCE
T ss_pred             EECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEecCCce
Confidence            98643      234567999999999999999996421            12223333    334445555444  6678


Q ss_pred             EEEEec
Q 017983          349 LVGKKG  354 (363)
Q Consensus       349 li~~K~  354 (363)
                      ++++|.
T Consensus       224 ~~~~k~  229 (229)
T 2avd_A          224 TLAFKI  229 (229)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888774

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.90  E-value=2.5e-09  Score=102.45  Aligned_cols=118  Identities=17%  Similarity=0.197  Sum_probs=75.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCCC-CC-CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFNT-YP-RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~lp-fp-~sFDlVh  287 (363)
                      ..+|||+|||+|.++..|++... +..|+.+|.+ .+++.+.++.      .    +.++...+...+. .+ ++||+|+
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi  174 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI  174 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence            47999999999999999997631 2357788888 7888887653      1    2233222222222 14 8999999


Q ss_pred             eccccccccccCCH--HHHHHHHhHhccCCeEEEEEcCH-----HHHHHHHHHHHhCCce
Q 017983          288 SSFLLSDVTQRCDI--ADVAVEMDRILRPGGYVLVQDTL-----EMINKLKPVLHSLQWS  340 (363)
Q Consensus       288 ~~~~l~~~~~~~~~--~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~l~~~l~W~  340 (363)
                      +.....+.+. ..+  ..++.++.|+|||||.+++....     .....+.+.++...+.
T Consensus       175 ~d~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~  233 (304)
T 3bwc_A          175 IDTTDPAGPA-SKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFA  233 (304)
T ss_dssp             EECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCS
T ss_pred             ECCCCccccc-hhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCC
Confidence            9765543321 112  57999999999999999996432     3445555555555443

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.89  E-value=2.1e-09  Score=101.53  Aligned_cols=96  Identities=16%  Similarity=0.108  Sum_probs=68.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCC-c-chHHHHHhcC---------c-------eeee-ccccccCCCC--
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDA-P-DTLSIIFDRG---------L-------IGMY-HDWCESFNTY--  279 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~-s-~~L~~a~~Rg---------l-------~~~~-~d~~e~~lpf--  279 (363)
                      ..+|||+|||+|.++..++..+..  .|+++|. + .+++.+.+..         +       +.+. .+|......+  
T Consensus        80 ~~~vLDlG~G~G~~~~~~a~~~~~--~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIVAFLAGAD--QVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTTCS--EEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             CCeEEEecccccHHHHHHHHcCCC--EEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            359999999999999999887641  4678888 6 7887765542         1       1111 2343211111  


Q ss_pred             --C-CCcceeeeccccccccccCCHHHHHHHHhHhcc---C--CeEEEEE
Q 017983          280 --P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILR---P--GGYVLVQ  321 (363)
Q Consensus       280 --p-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLR---P--GG~lii~  321 (363)
                        + ++||+|+++.++.|..   ....++.++.|+||   |  ||.+++.
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQ---AHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGG---GHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             hccCCCCCEEEEeCcccChH---HHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence              4 8999999999988754   46789999999999   9  9986654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.89  E-value=1.6e-09  Score=100.61  Aligned_cols=93  Identities=12%  Similarity=0.153  Sum_probs=66.2

Q ss_pred             CceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-C------CCC
Q 017983          221 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-Y------PRT  282 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-f------p~s  282 (363)
                      .++|||+|||+|.++..|+..   +.   .|+.+|.+ .+++.|.++    |+   +.++...+...++ +      .++
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            469999999999999988864   33   46777877 788777654    33   3333322222333 2      378


Q ss_pred             cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ||+|++...      ..+...++.++.|+|||||.+++.+
T Consensus       157 fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          157 YDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             BSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            999998743      2346789999999999999999864

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.89  E-value=7.2e-09  Score=94.10  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=73.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCC-C-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTY-P-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpf-p-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..+++.+.   .++++|.+ ++++.+.++    |+   +........  .++ + ++||+|++. 
T Consensus        92 ~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~-  165 (248)
T 2yvl_A           92 EKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFK--DAEVPEGIFHAAFVD-  165 (248)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTT--TSCCCTTCBSEEEEC-
T ss_pred             CCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChh--hcccCCCcccEEEEC-
Confidence            45999999999999999987632   46788888 788877765    32   233332222  233 6 899999973 


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhC
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSL  337 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l  337 (363)
                          .+   +...++.++.|+|||||.+++... .+.+.++.+.++..
T Consensus       166 ----~~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  206 (248)
T 2yvl_A          166 ----VR---EPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY  206 (248)
T ss_dssp             ----SS---CGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred             ----Cc---CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence                22   234689999999999999999877 34555555555444

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.89  E-value=1.4e-09  Score=111.14  Aligned_cols=96  Identities=14%  Similarity=0.128  Sum_probs=69.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++..+++.+..  .|+++|.+.|++.|.++    |+   +.+++...+ .+++++.||+|++..++.
T Consensus       159 ~~~VLDiGcGtG~la~~la~~~~~--~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~-~~~~~~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVE-EVSLPEQVDIIISEPMGY  235 (480)
T ss_dssp             TCEEEEESCSTTHHHHHHHHTTCS--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTT-TCCCSSCEEEEECCCCHH
T ss_pred             CCEEEEecCcccHHHHHHHHcCCC--EEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchh-hCccCCCeEEEEEeCchH
Confidence            469999999999999999886532  46667777666665543    43   344433223 256678899999988877


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEE
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLV  320 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii  320 (363)
                      |+.+. .+...+.++.|+|||||++++
T Consensus       236 ~~~~e-~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          236 MLFNE-RMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             HHTCH-HHHHHHHHGGGGEEEEEEEES
T ss_pred             hcCcH-HHHHHHHHHHHhcCCCCEEEE
Confidence            76532 456788899999999999985

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.88  E-value=8.2e-10  Score=96.85  Aligned_cols=100  Identities=19%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             CceEEEecccccHHHHHhhcC-CCe-------EEEEeecCCcchHHHHHhcCceee-eccccccC------CCCC-CCcc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLW-------VMNVVPIDAPDTLSIIFDRGLIGM-YHDWCESF------NTYP-RTYD  284 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~-------v~~v~~~d~s~~L~~a~~Rgl~~~-~~d~~e~~------lpfp-~sFD  284 (363)
                      ..+|||+|||+|.++..|++. +..       ...|+++|.+.+...   .+.... ..|.....      ..++ ++||
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD   99 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPL---EGATFLCPADVTDPRTSQRILEVLPGRRAD   99 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCC---TTCEEECSCCTTSHHHHHHHHHHSGGGCEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccC---CCCeEEEeccCCCHHHHHHHHHhcCCCCCc
Confidence            469999999999999999875 310       014667777633110   111111 12211000      0145 6999


Q ss_pred             eeeecccccc----ccccC----CHHHHHHHHhHhccCCeEEEEEcC
Q 017983          285 LLHSSFLLSD----VTQRC----DIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       285 lVh~~~~l~~----~~~~~----~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +|+|...++.    ..+..    ....++.|+.|+|||||.+++.+.
T Consensus       100 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A          100 VILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            9999764432    11110    014789999999999999999853

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.88  E-value=3.4e-09  Score=102.02  Aligned_cols=121  Identities=17%  Similarity=0.128  Sum_probs=74.7

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCCCCcceeeec---
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYPRTYDLLHSS---  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp~sFDlVh~~---  289 (363)
                      +..+|||+|||+|+++..|++.-.....|+++|.+ .+++.+.++    |+  +.+++..+....+++++||+|++.   
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pc  197 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC  197 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCC
Confidence            34699999999999999998631001146788988 788777665    43  333333233222234899999984   


Q ss_pred             ---ccccccccc------CC-------HHHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHHhCCce
Q 017983          290 ---FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHSLQWS  340 (363)
Q Consensus       290 ---~~l~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~l~W~  340 (363)
                         .++++-++.      .+       ...+|.++.|+|||||+++++.-    .+....++.+++...++
T Consensus       198 sg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~  268 (315)
T 1ixk_A          198 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE  268 (315)
T ss_dssp             TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             CCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence               223321110      00       14799999999999999999642    23334566666655544

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.88  E-value=6e-09  Score=93.23  Aligned_cols=125  Identities=19%  Similarity=0.180  Sum_probs=72.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCC--------CC----CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNT--------YP----RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lp--------fp----~sFDlVh~  288 (363)
                      ..+|||+|||+|+++..|++++..   |+++|.+.+..   ..++.....|..+  .+        ++    ++||+|++
T Consensus        26 g~~VLDlG~G~G~~s~~la~~~~~---V~gvD~~~~~~---~~~v~~~~~D~~~--~~~~~~~~~~~~~~~~~~~D~Vls   97 (191)
T 3dou_A           26 GDAVIEIGSSPGGWTQVLNSLARK---IISIDLQEMEE---IAGVRFIRCDIFK--ETIFDDIDRALREEGIEKVDDVVS   97 (191)
T ss_dssp             TCEEEEESCTTCHHHHHHTTTCSE---EEEEESSCCCC---CTTCEEEECCTTS--SSHHHHHHHHHHHHTCSSEEEEEE
T ss_pred             CCEEEEEeecCCHHHHHHHHcCCc---EEEEecccccc---CCCeEEEEccccC--HHHHHHHHHHhhcccCCcceEEec
Confidence            469999999999999999987544   45556553211   1233222333211  11        11    48999999


Q ss_pred             ccccc--------cccccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCcee-eee---------cceEE
Q 017983          289 SFLLS--------DVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWST-NIY---------HDQFL  349 (363)
Q Consensus       289 ~~~l~--------~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~-~~~---------~~~~l  349 (363)
                      .....        |.......+.+|.++.|+|||||.|++.... .....+....+.. +.. .+.         .|-.+
T Consensus        98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y~  176 (191)
T 3dou_A           98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSEIYI  176 (191)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCEEEE
T ss_pred             CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCceEEE
Confidence            64321        1111112357899999999999999986431 1223444444432 322 221         57777


Q ss_pred             EEEec
Q 017983          350 VGKKG  354 (363)
Q Consensus       350 i~~K~  354 (363)
                      ||++.
T Consensus       177 v~~~~  181 (191)
T 3dou_A          177 MFFGF  181 (191)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            77653

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.88  E-value=2.9e-09  Score=103.96  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=91.0

Q ss_pred             CCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCc------ee-eeccccccCCCCC-CCcceeeec
Q 017983          218 WSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGL------IG-MYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       218 ~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl------~~-~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      ....++|||||||+|.++..|+++.... .++..|.+.+++.+.++--      +. +.+|.    ..-| ..+|++++.
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~-~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~----~~~~~~~~D~~~~~  251 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYPGC-KITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDF----FKDPLPEADLYILA  251 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCSSC-EEEEEECHHHHHHHHHHSCC--CCSEEEEESCT----TTSCCCCCSEEEEE
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCCCc-eeEeccCHHHHHHHHHhhhhcccCceeeecCcc----ccCCCCCceEEEee
Confidence            3456799999999999999998753211 2344566677877766421      22 23442    2223 568999999


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcCH--------------H------------HHHHHHHHHHhCCceeee
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL--------------E------------MINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--------------~------------~~~~i~~l~~~l~W~~~~  343 (363)
                      ++||+|++. ....+|+++.|.|+|||+++|.|..              +            ...+++++++.-.|+..-
T Consensus       252 ~vlh~~~d~-~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~  330 (353)
T 4a6d_A          252 RVLHDWADG-KCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQ  330 (353)
T ss_dssp             SSGGGSCHH-HHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEE
T ss_pred             eecccCCHH-HHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence            999999764 3568999999999999999998731              0            124566777666666433


Q ss_pred             e-----cceEEEEEeccC
Q 017983          344 Y-----HDQFLVGKKGFW  356 (363)
Q Consensus       344 ~-----~~~~li~~K~~w  356 (363)
                      .     ...+++++|..-
T Consensus       331 v~~~~~~~~~i~ArKgt~  348 (353)
T 4a6d_A          331 FKKTGAIYDAILARKGTH  348 (353)
T ss_dssp             EECCSSSCEEEEEECCCC
T ss_pred             EEEcCCceEEEEEEecCc
Confidence            2     345788888653

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.87  E-value=1.3e-09  Score=98.26  Aligned_cols=92  Identities=15%  Similarity=0.150  Sum_probs=64.5

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcC-----------ceeeeccccccCCCCC-CCccee
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG-----------LIGMYHDWCESFNTYP-RTYDLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rg-----------l~~~~~d~~e~~lpfp-~sFDlV  286 (363)
                      ..+|||+|||+|.++..|++. +.. ..|+++|.+ .+++.+.++.           .+........ ..+.+ ++||+|
T Consensus        78 ~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~i  155 (226)
T 1i1n_A           78 GAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR-MGYAEEAPYDAI  155 (226)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG-GCCGGGCCEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcc-cCcccCCCcCEE
Confidence            469999999999999988864 210 146777887 7787766541           1222222222 23444 899999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++...+++         ++.++.|+|||||++++...
T Consensus       156 ~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          156 HVGAAAPV---------VPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EECSBBSS---------CCHHHHHTEEEEEEEEEEES
T ss_pred             EECCchHH---------HHHHHHHhcCCCcEEEEEEe
Confidence            99988765         34688999999999999754

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.87  E-value=5.4e-09  Score=97.71  Aligned_cols=109  Identities=15%  Similarity=0.138  Sum_probs=75.6

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|+.. +. ...++++|.+ .+++.+.++    |+   +.........  .++ ++||+|++. 
T Consensus       113 ~~~VLDiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~D~V~~~-  188 (277)
T 1o54_A          113 GDRIIDTGVGSGAMCAVLARAVGS-SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE--GFDEKDVDALFLD-  188 (277)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTT-TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG--CCSCCSEEEEEEC-
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH--cccCCccCEEEEC-
Confidence            359999999999999998875 21 1246788887 788877665    32   3333322222  267 899999984 


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCce
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWS  340 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~  340 (363)
                          .+   +...+|.++.|+|||||.+++.+.. +.+.++.+.++...|.
T Consensus       189 ----~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~  232 (277)
T 1o54_A          189 ----VP---DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI  232 (277)
T ss_dssp             ----CS---CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred             ----Cc---CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence                22   2346999999999999999998763 4556666666555564

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.86  E-value=7.2e-09  Score=91.43  Aligned_cols=117  Identities=9%  Similarity=0.004  Sum_probs=86.7

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeCCCCCC-
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSATPVYRH-   83 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~~~~~~-   83 (363)
                      -|.++.+++.|+++...+.+.+.++..+|+++++||+|+|..+++|+.. +...+|.++.|+|||||+++++.+..... 
T Consensus        69 vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~  148 (203)
T 3h2b_A           69 LEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLE  148 (203)
T ss_dssp             ECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCE
T ss_pred             EeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchh
Confidence            4899999999999976778888889999999999999999999988863 45789999999999999999986532110 


Q ss_pred             -C-----hhhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEec
Q 017983           84 -D-----DRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQK  122 (363)
Q Consensus        84 -~-----~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k  122 (363)
                       .     .........+..+.+..+++.+........-|..+...
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~~  193 (203)
T 3h2b_A          149 PMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAE  193 (203)
T ss_dssp             EECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEEE
T ss_pred             hhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhhh
Confidence             0     00000135678888899999888654332334444443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.85  E-value=1.4e-09  Score=99.21  Aligned_cols=91  Identities=14%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-C-Ccceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-R-TYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~-sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++..|++...  ..|+++|.+ .+++.+.++    |+  +.+.....  ..+++ + .||+|++..+
T Consensus        92 ~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~Ii~~~~  167 (235)
T 1jg1_A           92 GMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG--SKGFPPKAPYDVIIVTAG  167 (235)
T ss_dssp             TCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG--GGCCGGGCCEEEEEECSB
T ss_pred             CCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc--ccCCCCCCCccEEEECCc
Confidence            45999999999999999987531  246777877 788777765    22  22222211  35676 4 4999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      ++++.         .++.|+|||||.+++....
T Consensus       168 ~~~~~---------~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          168 APKIP---------EPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             BSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred             HHHHH---------HHHHHhcCCCcEEEEEEec
Confidence            88764         3789999999999998653

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.84  E-value=1.4e-09  Score=103.89  Aligned_cols=100  Identities=14%  Similarity=0.062  Sum_probs=68.2

Q ss_pred             CCceEEEecccc--cHHHHHhhc---CCCeEEEEeecCCc-chHHHHHhcC------ceeeeccccccC---C--CCC-C
Q 017983          220 SVRNVMDMNASY--GGFAAALID---QPLWVMNVVPIDAP-DTLSIIFDRG------LIGMYHDWCESF---N--TYP-R  281 (363)
Q Consensus       220 ~~r~VLDvGCG~--G~faa~L~~---~~v~v~~v~~~d~s-~~L~~a~~Rg------l~~~~~d~~e~~---l--pfp-~  281 (363)
                      .++.|||+|||+  ++....++.   .+.   .|+.+|.+ .||..++++-      -+..++......   +  |.. +
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~a---rVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~  154 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPES---RVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRD  154 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTC---EEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCC---EEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccc
Confidence            468999999997  333333332   122   47888998 8998887652      122222111110   1  111 5


Q ss_pred             Ccc-----eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          282 TYD-----LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       282 sFD-----lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +||     .|+++.+|||+++......+|.++.+.|+|||+|++++
T Consensus       155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI  200 (277)
T ss_dssp             TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence            566     58899999999887667889999999999999999984

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.84  E-value=1.5e-09  Score=104.51  Aligned_cols=99  Identities=17%  Similarity=0.114  Sum_probs=58.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEee--cCCcchHHHHH-hc-C--ceeeeccccccCCCCC-CCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVP--IDAPDTLSIIF-DR-G--LIGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~--~d~s~~L~~a~-~R-g--l~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|+++..|++.+ .|..|..  ...+.++..+. ++ |  .+.++.. . ....++ .+||+|+|...++
T Consensus        83 g~~VLDlGcG~G~~s~~la~~~-~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-D~~~l~~~~fD~V~sd~~~~  159 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-V-DVFFIPPERCDTLLCDIGES  159 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-C-CTTTSCCCCCSEEEECCCCC
T ss_pred             CCEEEEEcCCCCHHHHHHHhcC-CEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-c-ccccCCcCCCCEEEECCccc
Confidence            4699999999999999999873 3333322  11122221111 11 1  1222322 0 234456 8999999987764


Q ss_pred             --c-ccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          294 --D-VTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       294 --~-~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                        | ..+......+|.++.|+|||||.|++..
T Consensus       160 ~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          160 SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence              1 1111111258999999999999999864

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.84  E-value=3.4e-09  Score=96.95  Aligned_cols=128  Identities=16%  Similarity=0.109  Sum_probs=81.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeecccccc---CCCCC---CCccee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCES---FNTYP---RTYDLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~---~lpfp---~sFDlV  286 (363)
                      .++|||+|||+|.++..|+..-.....++.+|.+ ++++.|.++    |+   +.++...+..   .+++.   ++||+|
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V  152 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI  152 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence            3699999999999999998741101246777887 788777654    32   2222221111   12332   789999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH------------HHHHHHHHHHH----hCCceeeee--cceE
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKPVLH----SLQWSTNIY--HDQF  348 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~l~~----~l~W~~~~~--~~~~  348 (363)
                      ++....      .+...++.++.|+|||||++++.+..            .....++++.+    .-++.....  .+.+
T Consensus       153 ~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~  226 (232)
T 3cbg_A          153 FIDADK------RNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGM  226 (232)
T ss_dssp             EECSCG------GGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECSBTCE
T ss_pred             EECCCH------HHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEcCCeE
Confidence            987442      23567999999999999999996432            12333444443    334554443  5668


Q ss_pred             EEEEec
Q 017983          349 LVGKKG  354 (363)
Q Consensus       349 li~~K~  354 (363)
                      .+++|+
T Consensus       227 ~~~~~~  232 (232)
T 3cbg_A          227 TLALKK  232 (232)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            888774

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.84  E-value=6.2e-09  Score=98.59  Aligned_cols=98  Identities=14%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-----c-----------eeeeccccccCCCCCCCc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----L-----------IGMYHDWCESFNTYPRTY  283 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-----l-----------~~~~~d~~e~~lpfp~sF  283 (363)
                      ..+|||+|||+|.++..+++.+.  ..++.+|.+ .+++.|.+.-     +           +.++...+...++.+++|
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f  153 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  153 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence            46999999999999999998743  357788888 7888877642     1           222222221112115789


Q ss_pred             ceeeeccccccccccCC--HHHHHHHHhHhccCCeEEEEE
Q 017983          284 DLLHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |+|++.... ++.....  ...++.++.|+|||||.+++.
T Consensus       154 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          154 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            999986443 2221112  267899999999999999996

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.83  E-value=2.2e-09  Score=108.45  Aligned_cols=106  Identities=10%  Similarity=0.055  Sum_probs=69.1

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHH-------Hhc----Cc----eeeec-c
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSII-------FDR----GL----IGMYH-D  271 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a-------~~R----gl----~~~~~-d  271 (363)
                      .++.+.+..  ..+|||+|||+|.+++.|+.. +..  .|+++|.+ .+++.|       .++    |+    +.+++ +
T Consensus       234 ml~~l~l~~--g~~VLDLGCGsG~la~~LA~~~g~~--~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD  309 (433)
T 1u2z_A          234 VYQQCQLKK--GDTFMDLGSGVGNCVVQAALECGCA--LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  309 (433)
T ss_dssp             HHHHTTCCT--TCEEEEESCTTSHHHHHHHHHHCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHhcCCCC--CCEEEEeCCCcCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence            333444443  469999999999999999874 321  36677777 666655       443    41    22222 2


Q ss_pred             ccccCCCC--C-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          272 WCESFNTY--P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       272 ~~e~~lpf--p-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ......+|  + ++||+|+++..+. .+   ++..+|.|+.|+|||||.+++.+.
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l~-~~---d~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFLF-DE---DLNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTC-CH---HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             ccccccccccccCCCCEEEEeCccc-cc---cHHHHHHHHHHhCCCCeEEEEeec
Confidence            11111123  3 7899999876552 22   356789999999999999999863

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.83  E-value=1e-08  Score=90.44  Aligned_cols=118  Identities=14%  Similarity=0.145  Sum_probs=85.6

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++    |+  .+.+...+...+||++++||+|+|+.+++|+. +...+|.++.|+|||||+++++.+.
T Consensus        72 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~  150 (219)
T 3dlc_A           72 LDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWE-DVATAFREIYRILKSGGKTYIGGGF  150 (219)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhcc-CHHHHHHHHHHhCCCCCEEEEEecc
Confidence            37899999999888    44  36777888999999999999999999998874 4678999999999999999998653


Q ss_pred             CCC---------------CChhh------HHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCC
Q 017983           80 VYR---------------HDDRH------RSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVS  125 (363)
Q Consensus        80 ~~~---------------~~~e~------~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~  125 (363)
                      ...               .|...      ......+..+.+...++.+.-..+. .+...+.+|+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~-~~~~~~~~k~~~  216 (219)
T 3dlc_A          151 GNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGD-EGFWIIISKTDQ  216 (219)
T ss_dssp             SSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEET-TEEEEEEBCCSC
T ss_pred             CcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEecC-CceEEEEecccc
Confidence            211               11110      0112567888888889877655433 344555555543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.82  E-value=1.7e-08  Score=95.37  Aligned_cols=132  Identities=14%  Similarity=0.187  Sum_probs=83.4

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCCCCC-CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      .++|||+|||+|.++.+++++ ++.  .|+.+|.+ .+++.|++.-      +    +.++...+...++.. ++||+|+
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVK--KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCS--EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCc--eEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            479999999999999999987 432  46777887 7888877642      2    333333333334445 8999999


Q ss_pred             eccccccccccCC--HHHHHHHHhHhccCCeEEEEEcC-----HHHHHHHHHHHHhCCceeeee----------cceEEE
Q 017983          288 SSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWSTNIY----------HDQFLV  350 (363)
Q Consensus       288 ~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~~~~~----------~~~~li  350 (363)
                      +.... +......  ...++.++.|+|||||.+++...     .+.+..+.+.+++.=-.+...          .-.+++
T Consensus       154 ~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~  232 (275)
T 1iy9_A          154 VDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTI  232 (275)
T ss_dssp             ESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEE
T ss_pred             ECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEE
Confidence            96443 2211111  25699999999999999999742     233444444444432222221          234677


Q ss_pred             EEecc
Q 017983          351 GKKGF  355 (363)
Q Consensus       351 ~~K~~  355 (363)
                      +.|++
T Consensus       233 ask~~  237 (275)
T 1iy9_A          233 GSKKY  237 (275)
T ss_dssp             EESSC
T ss_pred             eeCCC
Confidence            88763

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.81  E-value=2.2e-09  Score=98.68  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=61.4

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.+++.|+++    |++ +.+.+.+++.+||++++||+|+|+.+++|+.+ ...+|.|+.|+|||||+|+++.+
T Consensus        65 vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d-~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A           65 FDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPN-PASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhHhcCC-HHHHHHHHHHHcCCCCEEEEEEc
Confidence            38899999998876    555 66777789999999999999999999988864 66899999999999999999854

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.81  E-value=1.8e-08  Score=89.11  Aligned_cols=109  Identities=11%  Similarity=-0.019  Sum_probs=72.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCCCCcceeeecccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~  298 (363)
                      ..+|||+|||+|.++..|+..+..  .|+++|.+ .+++.+.++.. +..+....+.   ++++||+|+++..++|+.+.
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~---~~~~~D~v~~~~p~~~~~~~  126 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVADVSE---ISGKYDTWIMNPPFGSVVKH  126 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECCGGG---CCCCEEEEEECCCC------
T ss_pred             CCEEEEEeCCccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhcCCCEEEECcHHH---CCCCeeEEEECCCchhccCc
Confidence            469999999999999999887532  46788888 89998888731 2223222222   35899999999999987643


Q ss_pred             CCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCC
Q 017983          299 CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQ  338 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~  338 (363)
                      . ...++.++.|+|  |+.+++. .......+.+++....
T Consensus       127 ~-~~~~l~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~g  162 (200)
T 1ne2_A          127 S-DRAFIDKAFETS--MWIYSIG-NAKARDFLRREFSARG  162 (200)
T ss_dssp             --CHHHHHHHHHHE--EEEEEEE-EGGGHHHHHHHHHHHE
T ss_pred             h-hHHHHHHHHHhc--CcEEEEE-cCchHHHHHHHHHHCC
Confidence            2 257899999999  6655544 3344566666665554

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.81  E-value=1e-08  Score=91.39  Aligned_cols=119  Identities=16%  Similarity=0.050  Sum_probs=87.3

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      -|.++.+++.|+++    |++ +.+...+...+|+++++||+|+|+.+++|+. +...+|.++.|+|||||+++++....
T Consensus        68 vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~  146 (219)
T 3dh0_A           68 IDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELS-EPLKFLEELKRVAKPFAYLAIIDWKK  146 (219)
T ss_dssp             EESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGGGCS-SHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             EECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhhhhcC-CHHHHHHHHHHHhCCCeEEEEEEecc
Confidence            47899999999877    554 6777788899999999999999999998875 45689999999999999999985421


Q ss_pred             CCC----ChhhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCC
Q 017983           81 YRH----DDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVS  125 (363)
Q Consensus        81 ~~~----~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~  125 (363)
                      ...    ..........+..+.+..+++.+......+...+.+.+|+..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~~  195 (219)
T 3dh0_A          147 EERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIVKQ  195 (219)
T ss_dssp             SCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEECC--
T ss_pred             cccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEEeccc
Confidence            110    000011135678888889999887654444556677777643

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.80  E-value=2.3e-09  Score=96.67  Aligned_cols=93  Identities=11%  Similarity=0.122  Sum_probs=65.7

Q ss_pred             CceEEEecccccHHHHHhhcCCC----eEEEEeecCCc-chHHHHHhc----C-------ceeeeccccccCCC----CC
Q 017983          221 VRNVMDMNASYGGFAAALIDQPL----WVMNVVPIDAP-DTLSIIFDR----G-------LIGMYHDWCESFNT----YP  280 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v----~v~~v~~~d~s-~~L~~a~~R----g-------l~~~~~d~~e~~lp----fp  280 (363)
                      ..+|||+|||+|.++..|++...    ....|+++|.+ .+++.+.++    |       .+.+....... .+    ++
T Consensus        81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~  159 (227)
T 2pbf_A           81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQ-VNEEEKKE  159 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGG-CCHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHh-cccccCcc
Confidence            46999999999999999987431    01146777887 788777665    2       12233222222 33    45


Q ss_pred             -CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          281 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       281 -~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                       ++||+|++...+++         ++.++.++|||||++++.-.
T Consensus       160 ~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          160 LGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEEE
T ss_pred             CCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEc
Confidence             89999999988875         35788999999999999754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.80  E-value=1.6e-09  Score=112.36  Aligned_cols=97  Identities=15%  Similarity=0.141  Sum_probs=72.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCC--CCC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFN--TYP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~l--pfp-~sFDlVh~~~  290 (363)
                      .-+|||||||.|.++..|+..|..   |+++|.+ .++++|..+    |.  +...+..++. +  +++ ++||+|+|..
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~ga~---V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~v~~~e  142 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASKGAT---IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEE-VIAALEEGEFDLAIGLS  142 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHH-HHHHCCTTSCSEEEEES
T ss_pred             CCeEEEECCCCcHHHHHHHhCCCE---EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHH-HhhhccCCCccEEEECc
Confidence            458999999999999999999865   6788888 888877653    42  2222322332 3  466 8999999999


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +|+|+++...+ ..+..+.+.|+++|..++..
T Consensus       143 ~~ehv~~~~~~-~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          143 VFHHIVHLHGI-DEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             CHHHHHHHHCH-HHHHHHHHHHHHHSSEEEEE
T ss_pred             chhcCCCHHHH-HHHHHHHHHhccccceeeEE
Confidence            99999876543 34556888899988877653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.80  E-value=9.1e-09  Score=99.12  Aligned_cols=133  Identities=14%  Similarity=0.172  Sum_probs=83.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC-------c----eeeeccccccCCCCC-CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------L----IGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg-------l----~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      ..+|||+|||+|.++..++++.. ...++.+|.+ .+++.+.++-       +    +.++...+...++.. ++||+|+
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            47999999999999999998631 2357788888 7888776541       1    223332233334445 8999999


Q ss_pred             eccccccc---cccCC--HHHHHHHHhHhccCCeEEEEEcC------HHHHHHHHHHHHhCCceeeee---------cce
Q 017983          288 SSFLLSDV---TQRCD--IADVAVEMDRILRPGGYVLVQDT------LEMINKLKPVLHSLQWSTNIY---------HDQ  347 (363)
Q Consensus       288 ~~~~l~~~---~~~~~--~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~l~~~l~W~~~~~---------~~~  347 (363)
                      +.... |.   .....  ...++.++.|+|||||.+++...      .+....+.+..+..--.+...         .-.
T Consensus       157 ~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~~  235 (314)
T 1uir_A          157 IDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFG  235 (314)
T ss_dssp             EECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEE
T ss_pred             ECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeEE
Confidence            97544 33   11111  26799999999999999998632      223444444444432222221         223


Q ss_pred             EEEEEecc
Q 017983          348 FLVGKKGF  355 (363)
Q Consensus       348 ~li~~K~~  355 (363)
                      ++++.|.+
T Consensus       236 ~~~as~~~  243 (314)
T 1uir_A          236 FLLASDAF  243 (314)
T ss_dssp             EEEEESSS
T ss_pred             EEEEECCC
Confidence            67788763

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.79  E-value=4.4e-09  Score=101.29  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=61.1

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcC-----------------ceeeeccccccCC-CCC
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG-----------------LIGMYHDWCESFN-TYP  280 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rg-----------------l~~~~~d~~e~~l-pfp  280 (363)
                      ..+|||+|||+|.++..|+.. +.. ..|+++|.+ .+++.|.++.                 .+.+.+......+ +++
T Consensus       106 g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~  184 (336)
T 2b25_A          106 GDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK  184 (336)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence            459999999999999999874 211 246777887 7887776641                 1333332222222 577


Q ss_pred             -CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          281 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       281 -~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                       ++||+|++...     +.   ..++.++.|+|||||.+++...
T Consensus       185 ~~~fD~V~~~~~-----~~---~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          185 SLTFDAVALDML-----NP---HVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             ---EEEEEECSS-----ST---TTTHHHHGGGEEEEEEEEEEES
T ss_pred             CCCeeEEEECCC-----CH---HHHHHHHHHhcCCCcEEEEEeC
Confidence             79999998532     11   2289999999999999998764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.79  E-value=4.7e-09  Score=102.18  Aligned_cols=119  Identities=15%  Similarity=0.089  Sum_probs=76.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCC----CCCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTY----PRTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpf----p~sFDlVh  287 (363)
                      ..+|||+|||+|.++..++..+.   .|+++|.+ .+++.+.+.    |+    +.++...+...++.    .++||+|+
T Consensus       154 ~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          154 PLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            45999999999999999998765   57888998 788877664    22    23333333333332    36899999


Q ss_pred             ecc---ccc----cccccCCHHHHHHHHhHhccCCeEEEEEcC-------HHHHHHHHHHHHhCCceee
Q 017983          288 SSF---LLS----DVTQRCDIADVAVEMDRILRPGGYVLVQDT-------LEMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       288 ~~~---~l~----~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-------~~~~~~i~~l~~~l~W~~~  342 (363)
                      +.-   ...    .+........++.++.|+|||||++++...       ..+...+++.+.....++.
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            842   111    001112356899999999999999777532       1234445545555555543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.79  E-value=5e-09  Score=99.57  Aligned_cols=125  Identities=16%  Similarity=0.195  Sum_probs=81.6

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCCCCCCc---ceeeec
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTYPRTY---DLLHSS  289 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lpfp~sF---DlVh~~  289 (363)
                      .+|||+|||+|.++..|+..+  ...|+++|.+ .+++.|.++    |+   +.++ .|+.   .+++++|   |+|+++
T Consensus       125 ~~vLDlG~GsG~~~~~la~~~--~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~---~~~~~~f~~~D~Ivsn  199 (284)
T 1nv8_A          125 KTVADIGTGSGAIGVSVAKFS--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL---EPFKEKFASIEMILSN  199 (284)
T ss_dssp             CEEEEESCTTSHHHHHHHHHS--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT---GGGGGGTTTCCEEEEC
T ss_pred             CEEEEEeCchhHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcch---hhcccccCCCCEEEEc
Confidence            589999999999999998762  1247788988 888877665    33   3333 3322   1234789   999996


Q ss_pred             ------------ccccccccc-----CCHHHHHHHHh-HhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee---cceE
Q 017983          290 ------------FLLSDVTQR-----CDIADVAVEMD-RILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY---HDQF  348 (363)
Q Consensus       290 ------------~~l~~~~~~-----~~~~~~L~Em~-RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~---~~~~  348 (363)
                                  .+. |.+..     ++-..++.++. +.|+|||++++.-..+.-..+.++....  .....   .+++
T Consensus       200 PPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~--~~~~D~~g~~R~  276 (284)
T 1nv8_A          200 PPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT--VFLKDSAGKYRF  276 (284)
T ss_dssp             CCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC--EEEECTTSSEEE
T ss_pred             CCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC--CeecccCCCceE
Confidence                        122 22110     11126899999 9999999999976555555666665554  22221   5677


Q ss_pred             EEEEec
Q 017983          349 LVGKKG  354 (363)
Q Consensus       349 li~~K~  354 (363)
                      ++++++
T Consensus       277 ~~~~~k  282 (284)
T 1nv8_A          277 LLLNRR  282 (284)
T ss_dssp             EEEECC
T ss_pred             EEEEEc
Confidence            777664

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.78  E-value=1.1e-08  Score=96.19  Aligned_cols=113  Identities=15%  Similarity=0.102  Sum_probs=76.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.|+..|+.... ...|+++|.+ .+++.+.+.    |+  +..+...++.. +..++||+|++.... 
T Consensus       120 ~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~d~p~-  196 (272)
T 3a27_A          120 NEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIMGYVH-  196 (272)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEECCCS-
T ss_pred             CCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEECCcc-
Confidence            46999999999999999987521 1246777887 777766553    32  22333334443 445789999987443 


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcCH-------HHHHHHHHHHHhCCceee
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDTL-------EMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-------~~~~~i~~l~~~l~W~~~  342 (363)
                            +...++.++.|+|||||.+++++..       .....++.+.+.+.++..
T Consensus       197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (272)
T 3a27_A          197 ------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI  246 (272)
T ss_dssp             ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred             ------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence                  3456899999999999999998643       233445555555555443

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.78  E-value=1.4e-08  Score=98.33  Aligned_cols=100  Identities=11%  Similarity=0.125  Sum_probs=66.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCCCCC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFNTYP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~lpfp-~sFDlVh~  288 (363)
                      .++|||+|||+|.++..|++... ...|+.+|.+ .+++.|.++-      +    +.++...+...++.+ ++||+|++
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            46999999999999999988631 2357888988 7888887652      1    223332222234445 89999998


Q ss_pred             ccccccccccCCH--HHHHHHHhHhccCCeEEEEEc
Q 017983          289 SFLLSDVTQRCDI--ADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       289 ~~~l~~~~~~~~~--~~~L~Em~RVLRPGG~lii~D  322 (363)
                      .. ..++.....+  ..++.++.|+|||||.+++..
T Consensus       188 d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          188 DS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CC-C-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             cC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            64 3333221122  579999999999999999974

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.78  E-value=1.6e-08  Score=98.31  Aligned_cols=120  Identities=17%  Similarity=0.009  Sum_probs=77.4

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeeccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ...+|||+|||+|+++..++........++++|.+ .+++.|.++    |+  +.+....+. .++++ ++||+|+++--
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~-~~~~~~~~~D~Ii~npP  281 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADAR-HLPRFFPEVDRILANPP  281 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGG-GGGGTCCCCSEEEECCC
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChh-hCccccCCCCEEEECCC
Confidence            34699999999999988887632000136777888 788777655    42  333333233 36666 88999999643


Q ss_pred             ccccc-c----cCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983          292 LSDVT-Q----RCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       292 l~~~~-~----~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~  343 (363)
                      +..-. +    ......++.++.|+|||||.+++.....  ..++++.+ ..|+...
T Consensus       282 yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~--~~~~~~~~-~g~~~~~  335 (354)
T 3tma_A          282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP--ALLKRALP-PGFALRH  335 (354)
T ss_dssp             SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH--HHHHHHCC-TTEEEEE
T ss_pred             CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHhh-cCcEEEE
Confidence            32110 0    0112678999999999999999987755  23455555 6665543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.77  E-value=2.1e-08  Score=99.51  Aligned_cols=97  Identities=18%  Similarity=0.198  Sum_probs=67.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHH----hcCc---eeeeccccccCCCCCCCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIF----DRGL---IGMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~----~Rgl---~~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      ..+|||||||+|.++...++.++.  .|+++|.++|+..|.    ..|+   +.+++...+ .+.+|..||+|++..+-.
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~-~~~lpe~~DvivsE~~~~  160 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVE-TVELPEQVDAIVSEWMGY  160 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTT-TCCCSSCEEEEECCCCBT
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeee-eecCCccccEEEeecccc
Confidence            358999999999988777776643  245555555555443    3454   555554444 367788899999865444


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEE
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLV  320 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii  320 (363)
                      .+.....+..++...+|.|||||.++-
T Consensus       161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          161 GLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccchhhhHHHHHHhhCCCCceECC
Confidence            443444678899999999999998764

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.76  E-value=4.6e-09  Score=95.10  Aligned_cols=92  Identities=16%  Similarity=0.194  Sum_probs=64.9

Q ss_pred             CceEEEecccccHHHHHhhcC-CC----eEEEEeecCCc-chHHHHHhcC-----------ceeeeccccccCCCCC--C
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PL----WVMNVVPIDAP-DTLSIIFDRG-----------LIGMYHDWCESFNTYP--R  281 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v----~v~~v~~~d~s-~~L~~a~~Rg-----------l~~~~~d~~e~~lpfp--~  281 (363)
                      ..+|||+|||+|.++..|++. +.    ....|+++|.+ .+++.+.++.           .+.+....+.  .+++  +
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~  162 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR--KGYPPNA  162 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGG--GCCGGGC
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcc--cCCCcCC
Confidence            459999999999999988863 21    00146777877 7787776542           1223332222  2455  7


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +||+|++...++|+.         .++.|+|||||++++.-.
T Consensus       163 ~fD~I~~~~~~~~~~---------~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          163 PYNAIHVGAAAPDTP---------TELINQLASGGRLIVPVG  195 (227)
T ss_dssp             SEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEEES
T ss_pred             CccEEEECCchHHHH---------HHHHHHhcCCCEEEEEEe
Confidence            999999998888643         789999999999999754

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.76  E-value=1.2e-08  Score=93.94  Aligned_cols=95  Identities=13%  Similarity=0.092  Sum_probs=64.9

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCC-C------CCCcc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT-Y------PRTYD  284 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lp-f------p~sFD  284 (363)
                      .++|||+|||+|..+..|+.. +- ...++.+|.+ .+++.+.+.    |+   +.++...+...++ +      +++||
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  149 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPD-DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD  149 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence            469999999999999988863 10 1246777887 778777553    43   3333222222222 2      37899


Q ss_pred             eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +|++...-      .+...++.++.|+|||||.+++.+
T Consensus       150 ~I~~d~~~------~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          150 FGFVDADK------PNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEEECSCG------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEECCch------HHHHHHHHHHHHhcCCCeEEEEec
Confidence            99986322      235779999999999999999865

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.76  E-value=6.7e-09  Score=99.24  Aligned_cols=99  Identities=7%  Similarity=0.033  Sum_probs=66.7

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCCCCC-CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      ..+|||+|||+|.++..++++ +.  ..|+.+|.+ .+++.+.++-      +    +.++...+...++.. ++||+|+
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            469999999999999999986 32  257788888 7888777642      1    233332222234445 8999999


Q ss_pred             ecccccc-ccccC--CHHHHHHHHhHhccCCeEEEEEc
Q 017983          288 SSFLLSD-VTQRC--DIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       288 ~~~~l~~-~~~~~--~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +... .+ .....  ....++.++.|+|||||.+++..
T Consensus       169 ~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          169 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             EEC-----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            8532 22 11111  12679999999999999999973

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.74  E-value=1.5e-07  Score=83.22  Aligned_cols=116  Identities=7%  Similarity=0.026  Sum_probs=81.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eeeeccccccCCCCCCCcceeeecccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNTYPRTYDLLHSSFLLSD  294 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~~lpfp~sFDlVh~~~~l~~  294 (363)
                      ..+|||+|||+|.++..|+..+..  .++++|.+ .+++.+.++..     +..++..++.   ++++||+|+++-.+++
T Consensus        50 ~~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~D~v~~~~p~~~  124 (207)
T 1wy7_A           50 GKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE---FNSRVDIVIMNPPFGS  124 (207)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG---CCCCCSEEEECCCCSS
T ss_pred             cCEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH---cCCCCCEEEEcCCCcc
Confidence            469999999999999999887532  47788888 78888877631     3333332222   4579999999987776


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEE-cCHHHHHHHHHHHHhCCceeeee
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      ... .....++.++.|+|  ||.+++. ........+.+++....|+....
T Consensus       125 ~~~-~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  172 (207)
T 1wy7_A          125 QRK-HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR  172 (207)
T ss_dssp             SST-TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred             ccC-CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence            543 23357899999999  6655544 25566777778887777766543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.74  E-value=7.7e-09  Score=99.42  Aligned_cols=100  Identities=16%  Similarity=0.161  Sum_probs=67.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc------Cc----eeeeccccccCCCCC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------GL----IGMYHDWCESFNTYP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R------gl----~~~~~d~~e~~lpfp-~sFDlVh~  288 (363)
                      .++|||+|||+|.++..|+++.- ...|+.+|.+ .+++.|.++      ++    +.++...+...++.. ++||+|++
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~  174 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  174 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence            47999999999999999998631 2257788888 788887764      11    333333233334555 89999998


Q ss_pred             ccccccccccC--CHHHHHHHHhHhccCCeEEEEEc
Q 017983          289 SFLLSDVTQRC--DIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       289 ~~~l~~~~~~~--~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      .... ++....  ....++.++.|+|||||.+++..
T Consensus       175 d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          175 DSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             ECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            6433 221110  12468999999999999999875

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.72  E-value=3.2e-08  Score=95.81  Aligned_cols=100  Identities=16%  Similarity=0.209  Sum_probs=68.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCCCCC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFNTYP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~lpfp-~sFDlVh~  288 (363)
                      ..+|||+|||+|.++.++++... ...|+.+|.+ .+++.+.++-      +    +.++...+...++.. ++||+|++
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            46999999999999999998621 2357888888 7888887652      1    222322222223334 89999998


Q ss_pred             ccccccccccCCH--HHHHHHHhHhccCCeEEEEEc
Q 017983          289 SFLLSDVTQRCDI--ADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       289 ~~~l~~~~~~~~~--~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ... .++.....+  ..++.++.|+|||||.+++..
T Consensus       196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            642 222111111  679999999999999999963

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.72  E-value=2.7e-09  Score=98.15  Aligned_cols=100  Identities=10%  Similarity=0.007  Sum_probs=59.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeecccccc-CC-CCC----CCccee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCES-FN-TYP----RTYDLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~-~l-pfp----~sFDlV  286 (363)
                      ..+|||+|||+|.++..|+.+.. ...|+++|.+ .|++.|.++    |+   +.+++..++. .+ +++    ++||+|
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            46899999999999988876410 1247788888 888877665    32   3334332222 12 444    489999


Q ss_pred             eecccccccc-c-----------cCCHHHHHHHHhHhccCCeEEEEE
Q 017983          287 HSSFLLSDVT-Q-----------RCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       287 h~~~~l~~~~-~-----------~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +|+--+.+.. +           ......++.++.|+|||||.+.+.
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            9985544322 0           011124567888888888876554

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.72  E-value=1.3e-08  Score=96.60  Aligned_cols=100  Identities=16%  Similarity=0.200  Sum_probs=69.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCCCC-CCCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFNTY-PRTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~lpf-p~sFDlVh~  288 (363)
                      ..+|||+|||+|+++..+++... +..++.+|.+ .+++.+.++-      +    +.++...+...++. +++||+|++
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            47999999999999999987631 2357788888 7888887652      1    22333222222333 489999998


Q ss_pred             ccccccccccCCH--HHHHHHHhHhccCCeEEEEEc
Q 017983          289 SFLLSDVTQRCDI--ADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       289 ~~~l~~~~~~~~~--~~~L~Em~RVLRPGG~lii~D  322 (363)
                      .... ++.....+  ..++.++.|+|||||.+++..
T Consensus       158 d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          158 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             ECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            6433 22211222  579999999999999999974

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.71  E-value=3.1e-08  Score=84.92  Aligned_cols=114  Identities=16%  Similarity=0.033  Sum_probs=80.0

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCC--C
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYR--H   83 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~--~   83 (363)
                      -|.++.+++.|+++.-.+.+...+   +|+++++||+|+|+.+++|+. +...++.++.|+|||||+++++......  .
T Consensus        45 vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~  120 (170)
T 3i9f_A           45 IDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMD-DKQHVISEVKRILKDDGRVIIIDWRKENTGI  120 (170)
T ss_dssp             ECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCS-CHHHHHHHHHHHEEEEEEEEEEEECSSCCSS
T ss_pred             EeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhccc-CHHHHHHHHHHhcCCCCEEEEEEcCcccccc
Confidence            488999999999984445555544   899999999999999998875 4668999999999999999998542210  0


Q ss_pred             Ch--hhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCC
Q 017983           84 DD--RHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVS  125 (363)
Q Consensus        84 ~~--e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~  125 (363)
                      .+  ...-....+..+.+  .|+.+....-.+.-...+++|+.+
T Consensus       121 ~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~~~  162 (170)
T 3i9f_A          121 GPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRKTS  162 (170)
T ss_dssp             SSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEECCC
T ss_pred             CchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecCCC
Confidence            00  00011345666666  888877665444455666666654

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.70  E-value=8.7e-09  Score=100.57  Aligned_cols=100  Identities=14%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCCC-CC-CCccee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFNT-YP-RTYDLL  286 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~lp-fp-~sFDlV  286 (363)
                      ..++|||+|||+|.++..|+++.. ...|+.+|.+ .+++.|.++-      +    +.++...+...++ ++ ++||+|
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            347999999999999999998631 2357888888 7888887642      1    2233322222232 45 899999


Q ss_pred             eeccccccccccCC--HHHHHHHHhHhccCCeEEEEE
Q 017983          287 HSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       287 h~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++.... ++.....  ...++.++.|+|||||.+++.
T Consensus       199 i~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          199 IVDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            986432 1111111  267999999999999999996

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.69  E-value=2.4e-08  Score=91.02  Aligned_cols=72  Identities=25%  Similarity=0.469  Sum_probs=61.9

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |++ +.+.+.+++.+||++++||+|+|+.+++||.+ ...+|.|+.|+|||||+++++.+
T Consensus        49 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           49 VDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSD-VRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             EESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhhccC-HHHHHHHHHHHcCCCcEEEEEEc
Confidence            37889999888765    555 66677788999999999999999999988874 66899999999999999999865

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.68  E-value=3.8e-08  Score=90.76  Aligned_cols=73  Identities=26%  Similarity=0.405  Sum_probs=62.6

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.|+.+++.|+++    |++  +.+...+...+||++++||+|+|..+++|+.+ ...+|.|+.|+|||||+++++.+.
T Consensus        90 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A           90 ISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPD-RGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSC-HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCC-HHHHHHHHHHHcCCCeEEEEEEee
Confidence            37899999999876    554  67777788999999999999999999988754 568999999999999999998653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.68  E-value=1.3e-08  Score=90.43  Aligned_cols=73  Identities=23%  Similarity=0.338  Sum_probs=63.8

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++...+.+...+...+||++++||+|+|+.+++|+. +...+|.|+.|+|||||+++++.+.
T Consensus        62 vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A           62 VEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE-DVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             ECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC-CHHHHHHHHHHHcCCCCEEEEEecC
Confidence            489999999999986456677778889999999999999998887776 4668999999999999999999874

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.68  E-value=1.7e-08  Score=98.10  Aligned_cols=98  Identities=10%  Similarity=0.114  Sum_probs=68.2

Q ss_pred             ceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCc------eeeeccccccCC-CCC-CCcceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGL------IGMYHDWCESFN-TYP-RTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl------~~~~~d~~e~~l-pfp-~sFDlVh~~~~  291 (363)
                      .+|||+|||+|.++.+|++ .+..  .++.+|.+ .+++.++++--      +.+++..+...+ .++ ++||+|++...
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~--~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQS--RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTC--EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCc--EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence            3999999999999999998 4322  46778888 79998887621      333333232233 356 89999998643


Q ss_pred             cccccccCC--HHHHHHHHhHhccCCeEEEEEc
Q 017983          292 LSDVTQRCD--IADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       292 l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~D  322 (363)
                       .+......  -..++.++.|+|||||.+++.-
T Consensus       169 -~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          169 -AGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             -TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence             32211111  1679999999999999999864

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.67  E-value=7.3e-08  Score=94.63  Aligned_cols=115  Identities=10%  Similarity=-0.011  Sum_probs=78.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCC-C-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTY-P-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpf-p-~sFDlVh~~~~  291 (363)
                      ..+|||+| |+|.++..++..+.. ..|+++|.+ .|++.|.++    |+  +.++.......+|. . ++||+|+++..
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p  250 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP  250 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence            46999999 999999998875421 247888988 899888766    43  33343333333564 3 79999999876


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeE-EEEEcCH-----HHHHHHHHHHH-hCCcee
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGY-VLVQDTL-----EMINKLKPVLH-SLQWST  341 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~-lii~D~~-----~~~~~i~~l~~-~l~W~~  341 (363)
                      +++..    ...++.++.|+|||||. ++++-..     ..+..+.+++. .+....
T Consensus       251 ~~~~~----~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  303 (373)
T 2qm3_A          251 ETLEA----IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI  303 (373)
T ss_dssp             SSHHH----HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred             CchHH----HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence            65431    47899999999999994 3444322     22356667666 665544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.65  E-value=8.1e-08  Score=88.65  Aligned_cols=100  Identities=19%  Similarity=0.224  Sum_probs=75.4

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++    |++  +.+...+.+.+||++++||+|+|+.+++|+  +...+|.++.|+|||||+++++.+.
T Consensus        75 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A           75 LDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            38899999999876    554  777788899999999999999999999887  4568999999999999999998653


Q ss_pred             CC--CCChhhHHHH----------HHHHHHHhhcceEEEE
Q 017983           80 VY--RHDDRHRSVW----------NAMVNLTESMCWKAVA  107 (363)
Q Consensus        80 ~~--~~~~e~~~~~----------~~~~~l~~~~cw~~~~  107 (363)
                      ..  ....+....|          ..+..+++...++.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~  192 (267)
T 3kkz_A          153 WFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVA  192 (267)
T ss_dssp             ESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEE
T ss_pred             ecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEE
Confidence            21  1222223333          3466666677776654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.64  E-value=1.5e-08  Score=94.83  Aligned_cols=72  Identities=19%  Similarity=0.230  Sum_probs=62.8

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|+++.+++.|+++    |++  +.+...+...+||++++||+|+|..+++|+.+ ...+|.|+.|+|||||+|+++.+
T Consensus       111 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          111 LNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD-KLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             EESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCC-HHHHHHHHHHHcCCCeEEEEEEe
Confidence            48899999999876    443  67777888999999999999999999988875 67899999999999999999966

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.64  E-value=4.8e-08  Score=93.77  Aligned_cols=123  Identities=16%  Similarity=0.172  Sum_probs=71.7

Q ss_pred             CceEEEecc------cccH-HHHHhhcCCCeEEEEeecCCcchHHHHHhcCcee-eeccccccCCCCCCCcceeeecccc
Q 017983          221 VRNVMDMNA------SYGG-FAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIG-MYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGC------G~G~-faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~-~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ..+|||+||      |+|+ .++.+...+.   .|+++|.++.+     .++.- ...|. + .++++++||+|+++...
T Consensus        64 g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~---~V~gvDis~~v-----~~v~~~i~gD~-~-~~~~~~~fD~Vvsn~~~  133 (290)
T 2xyq_A           64 NMRVIHFGAGSDKGVAPGTAVLRQWLPTGT---LLVDSDLNDFV-----SDADSTLIGDC-A-TVHTANKWDLIISDMYD  133 (290)
T ss_dssp             TCEEEEESCCCTTSBCHHHHHHHHHSCTTC---EEEEEESSCCB-----CSSSEEEESCG-G-GCCCSSCEEEEEECCCC
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHHHcCCCC---EEEEEECCCCC-----CCCEEEEECcc-c-cCCccCcccEEEEcCCc
Confidence            459999999      5576 2222222222   35677777331     23322 34443 3 25666899999987432


Q ss_pred             cc--------ccccCCHHHHHHHHhHhccCCeEEEEEcCH-HHHHHHHHHHHhCCce-eeee------cceEEEEEe
Q 017983          293 SD--------VTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWS-TNIY------HDQFLVGKK  353 (363)
Q Consensus       293 ~~--------~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~-~~~~------~~~~li~~K  353 (363)
                      +.        .......+.++.|+.|+|||||.|++.... .....+.++++...+. +...      .|.+++++.
T Consensus       134 ~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr~~s~e~~lv~~~  210 (290)
T 2xyq_A          134 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGAN  210 (290)
T ss_dssp             CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGGTTSSCEEEEEEE
T ss_pred             cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcCCCchheEEecCC
Confidence            21        111112457999999999999999996522 2224666666666443 3332      366776664

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.64  E-value=6.2e-09  Score=98.05  Aligned_cols=72  Identities=11%  Similarity=0.031  Sum_probs=56.7

Q ss_pred             CCCCHHHHHHHHHc-----CCCce---eeecccCCCC------CCCCCccEEEeCCcccccccCCCchhhhhcccccCCe
Q 017983            6 KDEHEAQIQFALER-----GIPAI---LSVIGTQKLT------FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGG   71 (363)
Q Consensus         6 ~D~~~~qvq~A~er-----g~p~~---~~~~~~~~LP------fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG   71 (363)
                      -|.|+.+++.|+++     |++..   +...+++.++      |++++||+|+|+.+++|+.+ +..+|.|+.|+|||||
T Consensus        88 vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d-~~~~l~~~~r~LkpgG  166 (292)
T 2aot_A           88 VEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD-IPATLKFFHSLLGTNA  166 (292)
T ss_dssp             ECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSC-HHHHHHHHHHTEEEEE
T ss_pred             EeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCC-HHHHHHHHHHHcCCCc
Confidence            48899999999887     34322   2233444443      78999999999999988764 6789999999999999


Q ss_pred             EEEEEeC
Q 017983           72 FFIWSAT   78 (363)
Q Consensus        72 ~~~~s~~   78 (363)
                      +|+++.+
T Consensus       167 ~l~i~~~  173 (292)
T 2aot_A          167 KMLIIVV  173 (292)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999854

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.63  E-value=2.5e-08  Score=90.95  Aligned_cols=71  Identities=15%  Similarity=0.147  Sum_probs=60.9

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.+++.|+++    |+.  +.+...+++.+|| +++||+|+|..+++|+. +...+|.|+.|+|||||+++++.+
T Consensus        65 vD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~-~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A           65 IDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCChHhcC-CHHHHHHHHHHHcCCCeEEEEecC
Confidence            37899999998776    554  6777888999999 89999999998887776 467899999999999999999866

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.62  E-value=2.1e-08  Score=90.09  Aligned_cols=71  Identities=20%  Similarity=0.091  Sum_probs=60.9

Q ss_pred             CCCCHHHHHHHHHcCC-CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhc-ccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGI-PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELN-RILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~-p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~-RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++-. .+.+.+.+++.+ +++++||+|+|+.+++|+.+ +..+|.|+. |+|||||+++++.|
T Consensus        70 vD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A           70 VEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD-PVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             EESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS-HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC-HHHHHHHHHHHhcCCCCEEEEEcC
Confidence            3889999999999854 466667777777 68899999999999988764 568999999 99999999999987

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.62  E-value=1.6e-08  Score=95.02  Aligned_cols=99  Identities=11%  Similarity=0.077  Sum_probs=64.7

Q ss_pred             CceEEEecccccHHHHHhhc--CCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCC-----CCCccee
Q 017983          221 VRNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTY-----PRTYDLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~--~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpf-----p~sFDlV  286 (363)
                      ..+|||+|||+|+++..|++  .+.  ..|+++|.+ .+++.+.++    |+  +.+++..+.. ++.     +++||+|
T Consensus        84 g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRK-YKDYLLKNEIFFDKI  160 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHH-HHHHHHHTTCCEEEE
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHh-cchhhhhccccCCEE
Confidence            46999999999999998886  231  146777888 777776655    43  3333322222 222     4789999


Q ss_pred             eecc------ccccc--------c-ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          287 HSSF------LLSDV--------T-QRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       287 h~~~------~l~~~--------~-~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ++.-      ++++-        . .......+|.++.|+|||||+++++.
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            9862      22210        0 01234679999999999999999974

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.61  E-value=6.2e-08  Score=97.70  Aligned_cols=117  Identities=16%  Similarity=0.156  Sum_probs=73.7

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC--CC-CCcceeee-
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT--YP-RTYDLLHS-  288 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp--fp-~sFDlVh~-  288 (363)
                      +..+|||+|||+|+++..|+..-.....|+++|.+ .+++.+.++    |+  +.+....... ++  |+ ++||+|++ 
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~fD~Vl~D  337 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARK-APEIIGEEVADKVLLD  337 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTC-CSSSSCSSCEEEEEEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhh-cchhhccCCCCEEEEc
Confidence            34699999999999999988731000146788888 778776655    44  3333322222 33  77 88999996 


Q ss_pred             -----ccccccccc------cCCH-------HHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHHhC
Q 017983          289 -----SFLLSDVTQ------RCDI-------ADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHSL  337 (363)
Q Consensus       289 -----~~~l~~~~~------~~~~-------~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~l  337 (363)
                           ..++++-++      ..++       ..+|.++.++|||||++++++-    .+.-..+..+++..
T Consensus       338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~  408 (450)
T 2yxl_A          338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVH  408 (450)
T ss_dssp             CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence                 233332211      1122       5689999999999999998752    22334555555443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.61  E-value=2e-07  Score=82.98  Aligned_cols=117  Identities=13%  Similarity=0.108  Sum_probs=84.1

Q ss_pred             CCCCHHHHHHHHHcCC-CceeeecccCCCCCCCCCccEEEeCCcccccccCCCc--hhhhhcccccCCeEEEEEeCCCCC
Q 017983            6 KDEHEAQIQFALERGI-PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGK--PLLELNRILRPGGFFIWSATPVYR   82 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~-p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~--~l~E~~RVLrPGG~~~~s~~~~~~   82 (363)
                      -|.++.+++.|+++-- .+.+...++..+|++ ++||+|+|..+++|+.+ +..  +|.++.|+|||||+++++.+... 
T Consensus        73 vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~-  149 (220)
T 3hnr_A           73 IEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTD-DEKNVAIAKYSQLLNKGGKIVFADTIFA-  149 (220)
T ss_dssp             ECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCH-HHHHHHHHHHHHHSCTTCEEEEEEECBS-
T ss_pred             EeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCCh-HHHHHHHHHHHHhcCCCCEEEEEecccc-
Confidence            4889999999998854 466777889999999 99999999999888765 334  99999999999999999975321 


Q ss_pred             CChhhH---------------H--------HHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCCC
Q 017983           83 HDDRHR---------------S--------VWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSY  126 (363)
Q Consensus        83 ~~~e~~---------------~--------~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~~  126 (363)
                      ......               .        ....+..+.+..+++.+..... +..-+.+=+|+...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~-~~~w~~~~~~~~~~  215 (220)
T 3hnr_A          150 DQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLN-HFVWVMEATKQLEH  215 (220)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECS-SSEEEEEEEECSCC
T ss_pred             ChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeecc-ceEEEEeehhhhhh
Confidence            111100               0        0256888889999987765533 22334445555443

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.60  E-value=4.7e-08  Score=97.39  Aligned_cols=116  Identities=15%  Similarity=0.222  Sum_probs=74.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cce-eeeccccccCCCC-CCCcceeeecccc-
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-GMYHDWCESFNTY-PRTYDLLHSSFLL-  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~-~~~~d~~e~~lpf-p~sFDlVh~~~~l-  292 (363)
                      ..+|||+|||+|+|+..++..+..   |+++|.+ .+++.+.+.    |+. .+....+...++. ++.||+|++.--. 
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f  291 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL  291 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred             CCeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence            469999999999999999987654   7788988 788877665    331 1222223333333 4459999985221 


Q ss_pred             cc----c-cccCCHHHHHHHHhHhccCCeEEEEEcC------HHHHHHHHHHHHhCCc
Q 017983          293 SD----V-TQRCDIADVAVEMDRILRPGGYVLVQDT------LEMINKLKPVLHSLQW  339 (363)
Q Consensus       293 ~~----~-~~~~~~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~l~~~l~W  339 (363)
                      ..    + ........++.++.|+|||||++++...      ....+.+.+.+....-
T Consensus       292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~  349 (393)
T 4dmg_A          292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGR  349 (393)
T ss_dssp             CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence            10    0 0001235789999999999999997643      2344555555544433

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.60  E-value=2.7e-08  Score=90.73  Aligned_cols=71  Identities=20%  Similarity=0.188  Sum_probs=61.6

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |++  +.+...+++.+||++++||+|+|..+++|+  +...+|.++.|+|||||+++++.+
T Consensus        75 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A           75 IDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence            37899999998876    555  677788899999999999999999988877  356899999999999999999975

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.60  E-value=2e-08  Score=92.68  Aligned_cols=73  Identities=21%  Similarity=0.397  Sum_probs=63.9

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++.... +.+.+++.+||++++||+|+|..+++|+..+...+|.|+.|+|||||.++++.+.
T Consensus        82 vD~s~~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A           82 VDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             EESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EeCCHHHHHHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            388999999999986543 6677888999999999999999888898666778999999999999999999773

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.60  E-value=2.2e-08  Score=91.25  Aligned_cols=73  Identities=19%  Similarity=0.252  Sum_probs=63.3

Q ss_pred             CCCCHHHHHHHHHcC---CCceeeecccCCCCCCCCCccEEEeCCcccccc-cCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERG---IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWD-AQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg---~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~-~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++.   ..+.+...+...+||++++||+|+|+.+++|+. .+...+|.++.|+|||||+++++.+
T Consensus        84 vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A           84 IDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             EESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            488999999999985   346777788899999999999999999998883 2356899999999999999999865

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.58  E-value=1e-07  Score=95.42  Aligned_cols=115  Identities=17%  Similarity=0.275  Sum_probs=72.2

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCC--CC-CCcceeeec-
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNT--YP-RTYDLLHSS-  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lp--fp-~sFDlVh~~-  289 (363)
                      +..+|||+|||+|+++..|++.... ..|+++|.+ .+++.+.++    |+ +.++...+. .++  |+ ++||+|++. 
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~-~~~~~~~~~~fD~Vl~D~  323 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR-YPSQWCGEQQFDRILLDA  323 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTT-CTHHHHTTCCEEEEEEEC
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchh-hchhhcccCCCCEEEEeC
Confidence            3469999999999999999874211 246777877 677766655    43 222322222 233  56 799999962 


Q ss_pred             -----cccccccc------cCCH-------HHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHHh
Q 017983          290 -----FLLSDVTQ------RCDI-------ADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS  336 (363)
Q Consensus       290 -----~~l~~~~~------~~~~-------~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~  336 (363)
                           .++++-++      ..++       ..+|.++.++|||||++++++-    .+....+..+++.
T Consensus       324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~  392 (429)
T 1sqg_A          324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR  392 (429)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHh
Confidence                 23333211      0111       4789999999999999999761    2233455555543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.58  E-value=2.2e-07  Score=80.20  Aligned_cols=98  Identities=14%  Similarity=0.066  Sum_probs=73.9

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeC-Cccccccc-CCCchhhhhcccccCCeEEEEEeCCCCCC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCA-RCRVHWDA-QGGKPLLELNRILRPGGFFIWSATPVYRH   83 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs-~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~~~~~~   83 (363)
                      -|.++.+++.|.++.-.+.+...+...+|+++++||+|+|+ .+++|... +...+|.++.|+|||||+++++.+.....
T Consensus        74 ~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~  153 (195)
T 3cgg_A           74 TDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGW  153 (195)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSC
T ss_pred             EcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCc
Confidence            37899999999998656777788888899999999999998 45555432 23579999999999999999987643221


Q ss_pred             ChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           84 DDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        84 ~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      .      ...+..+.....++.....
T Consensus       154 ~------~~~~~~~l~~~Gf~~~~~~  173 (195)
T 3cgg_A          154 V------FGDFLEVAERVGLELENAF  173 (195)
T ss_dssp             C------HHHHHHHHHHHTEEEEEEE
T ss_pred             C------HHHHHHHHHHcCCEEeeee
Confidence            1      2356666677778776654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.57  E-value=3.1e-08  Score=90.42  Aligned_cols=72  Identities=15%  Similarity=0.115  Sum_probs=62.9

Q ss_pred             CCCCHHHHHHHHHcC--CCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERG--IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg--~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++.  ..+.+...++..+|+++++||+|+|+.+++|+. +...+|.++.|+|||||+|+++.+
T Consensus        73 vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A           73 IDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA-SFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             EESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh-hHHHHHHHHHHHcCCCcEEEEEeC
Confidence            488999999999984  346777888899999999999999999888774 467899999999999999999865

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.57  E-value=3.7e-08  Score=89.84  Aligned_cols=70  Identities=17%  Similarity=0.215  Sum_probs=60.4

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.++.+++.|.++    ...+.+...+++.+||++++||+|+|+.+++|+. +...++.|+.|+|||||+++++
T Consensus        67 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           67 LDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVP-DWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCT-THHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhhcC-CHHHHHHHHHHHCCCCcEEEEE
Confidence            48899999999988    2346677778899999999999999998887665 4668999999999999999998

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.56  E-value=3.3e-08  Score=87.25  Aligned_cols=73  Identities=19%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccc-cCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWD-AQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~-~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    +..+.+...++..+|+++++||+|+|+.+++|+. .+...++.++.|+|||||+++++..
T Consensus        52 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           52 IEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             EECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            37899999998875    5556777888889999999999999998888874 3356899999999999999999865

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.56  E-value=3e-08  Score=89.45  Aligned_cols=114  Identities=18%  Similarity=0.172  Sum_probs=83.4

Q ss_pred             CCCCHHHHHHHHHc--CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCC-
Q 017983            6 KDEHEAQIQFALER--GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYR-   82 (363)
Q Consensus         6 ~D~~~~qvq~A~er--g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~-   82 (363)
                      -|.++.+++.|.++  +..+.+...++..+|+++++||+|+|..+++|+. +...+|.++.|+|||||+++++.+.... 
T Consensus        81 vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~  159 (242)
T 3l8d_A           81 VDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE-EPLRALNEIKRVLKSDGYACIAILGPTAK  159 (242)
T ss_dssp             EESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS-CHHHHHHHHHHHEEEEEEEEEEEECTTCG
T ss_pred             EECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc-CHHHHHHHHHHHhCCCeEEEEEEcCCcch
Confidence            48899999999988  3446777888899999999999999999998875 4668999999999999999998642110 


Q ss_pred             ----CChhh--------HHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCCChh
Q 017983           83 ----HDDRH--------RSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSC  128 (363)
Q Consensus        83 ----~~~e~--------~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~~~c  128 (363)
                          .+...        ......+..+.+..+++.+...        .+|........
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~--------~~~~~~~~~~~  209 (242)
T 3l8d_A          160 PRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI--------GVYKRGVNEKM  209 (242)
T ss_dssp             GGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE--------EEECTTCCHHH
T ss_pred             hhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee--------cccccCccHHH
Confidence                00000        0012467888888899888754        44665544433

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.56  E-value=1.6e-07  Score=92.29  Aligned_cols=118  Identities=11%  Similarity=0.035  Sum_probs=77.5

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      ...+|||+|||+|+++..++..+.+ ..|+++|.+ .|++.|.++    |+   +.+.+.... .+|++ ++||+|+++-
T Consensus       217 ~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~-~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          217 DGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT-QLSQYVDSVDFAISNL  294 (373)
T ss_dssp             CSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG-GGGGTCSCEEEEEEEC
T ss_pred             CCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-hCCcccCCcCEEEECC
Confidence            3469999999999999999886542 146788888 888877665    33   333333333 36777 9999999975


Q ss_pred             cccccc-ccCC----HHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983          291 LLSDVT-QRCD----IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       291 ~l~~~~-~~~~----~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~  343 (363)
                      -+..-. ....    ...++.++.|+| +|+.++++...+   .+++......|+...
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~~~---~~~~~~~~~G~~~~~  348 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTEKK---AIEEAIAENGFEIIH  348 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE-EEEEEEEESCHH---HHHHHHHHTTEEEEE
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECCHH---HHHHHHHHcCCEEEE
Confidence            443211 1111    256889999999 555566665544   444566777777544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.56  E-value=4.7e-08  Score=89.10  Aligned_cols=71  Identities=15%  Similarity=0.098  Sum_probs=62.3

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|.++.-.+.+...+++.+| ++++||+|+|+.+++|+. +...+|.++.|+|||||+|+++.+
T Consensus        63 ~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           63 IDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVP-DHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             EESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGST-THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCC-CHHHHHHHHHHhcCCCeEEEEEeC
Confidence            48899999999998656778888898999 899999999998887664 467899999999999999999986

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.56  E-value=7.8e-08  Score=90.57  Aligned_cols=87  Identities=13%  Similarity=0.095  Sum_probs=63.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----------ceeeeccccccCCCCCCCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----------LIGMYHDWCESFNTYPRTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----------l~~~~~d~~e~~lpfp~sFDlVh~~  289 (363)
                      .++|||+|||+|+++.++++++   ..|+.+|.+ .+++.|.++-          -+.+....+..   |.++||+|++.
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~---~~~~fD~Ii~d  146 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDL---DIKKYDLIFCL  146 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGS---CCCCEEEEEES
T ss_pred             CCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHH---HHhhCCEEEEC
Confidence            4799999999999999998874   367888888 7887776541          12233322322   22889999987


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      .     .+   ...++.++.|+|||||.+++.
T Consensus       147 ~-----~d---p~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          147 Q-----EP---DIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             S-----CC---CHHHHHHHHTTEEEEEEEEEE
T ss_pred             C-----CC---hHHHHHHHHHhcCCCcEEEEE
Confidence            2     12   234899999999999999996

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.56  E-value=1.8e-07  Score=85.91  Aligned_cols=120  Identities=9%  Similarity=0.002  Sum_probs=87.8

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCC-cccccc--cCCCchhhhhcccccCCeEEEEEeCCCCC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCAR-CRVHWD--AQGGKPLLELNRILRPGGFFIWSATPVYR   82 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~-~~~~~~--~~~~~~l~E~~RVLrPGG~~~~s~~~~~~   82 (363)
                      -|.++.+++.|+++.-.+.+.+.++..+|+ +++||+|+|+. +++|+.  ++...+|.++.|+|||||+|+++......
T Consensus        78 vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  156 (263)
T 3pfg_A           78 LELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPE  156 (263)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred             EECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence            488999999999986567788888999999 79999999998 777764  23457899999999999999997321000


Q ss_pred             CC------------------------------------------------hh---h-HHHHHHHHHHHhhcceEEEEEec
Q 017983           83 HD------------------------------------------------DR---H-RSVWNAMVNLTESMCWKAVARSV  110 (363)
Q Consensus        83 ~~------------------------------------------------~e---~-~~~~~~~~~l~~~~cw~~~~~~~  110 (363)
                      .+                                                .+   . .-....++.+++.-.++.+.-.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~  236 (263)
T 3pfg_A          157 NFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPG  236 (263)
T ss_dssp             TCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESS
T ss_pred             hccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeC
Confidence            00                                                00   0 00135788888999998888776


Q ss_pred             CCCceeEEEEecCCCC
Q 017983          111 DSNRIGFVIYQKPVSY  126 (363)
Q Consensus       111 ~~~~~~~~i~~k~~~~  126 (363)
                      ...+.++-|-+||..+
T Consensus       237 ~~~~~~~~va~K~a~~  252 (263)
T 3pfg_A          237 GPSGRGLFTGLPGAKG  252 (263)
T ss_dssp             TTTSSCEEEEEECC--
T ss_pred             CCCCceeEEEecCCCC
Confidence            6556677888888654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.55  E-value=1e-07  Score=85.50  Aligned_cols=100  Identities=18%  Similarity=0.247  Sum_probs=74.8

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChh
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDR   86 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e   86 (363)
                      |.++.+++.|.+++  +.+...+...+|+++++||+|+|..+++|.. +...+|.++.|+|||||+++++.+.....+..
T Consensus        72 D~s~~~~~~a~~~~--~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~  148 (219)
T 1vlm_A           72 EPSERMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFVD-DPERALKEAYRILKKGGYLIVGIVDRESFLGR  148 (219)
T ss_dssp             ESCHHHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGSS-CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHH
T ss_pred             CCCHHHHHHHHhcC--CEEEEcccccCCCCCCCeeEEEEcchHhhcc-CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHH
Confidence            78999999999984  4566677888999999999999999887765 46689999999999999999997643211111


Q ss_pred             hH---------------HHHHHHHHHHhhcceEEEEEe
Q 017983           87 HR---------------SVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        87 ~~---------------~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      ..               .....+..+.+..+++.+..+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~  186 (219)
T 1vlm_A          149 EYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV  186 (219)
T ss_dssp             HHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence            00               013466777777777766644

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.55  E-value=7.8e-08  Score=89.47  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|.++.-.+.+.+.+++.+|+ +++||+|+|+.+++|+. +...+|.|+.|+|||||+|+++.+
T Consensus        85 vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A           85 TDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVK-EPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             EESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhhCc-CHHHHHHHHHHhcCCCcEEEEEec
Confidence            388999999999886456777788889998 58999999998887665 466899999999999999999876

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.55  E-value=1.5e-08  Score=90.85  Aligned_cols=71  Identities=11%  Similarity=-0.015  Sum_probs=57.7

Q ss_pred             CCCCHHHHHHHHHc-C----------------CCceeeecccCCCCCCC-CCccEEEeCCcccccccC-CCchhhhhccc
Q 017983            6 KDEHEAQIQFALER-G----------------IPAILSVIGTQKLTFPD-DAYDLIHCARCRVHWDAQ-GGKPLLELNRI   66 (363)
Q Consensus         6 ~D~~~~qvq~A~er-g----------------~p~~~~~~~~~~LPfpd-~sFD~v~cs~~~~~~~~~-~~~~l~E~~RV   66 (363)
                      -|.|+.+++.|+++ +                ..+.+.+.++..+|+++ ++||+|+|+.+++|.+.. ...++.|+.|+
T Consensus        50 vD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~  129 (203)
T 1pjz_A           50 AELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEAL  129 (203)
T ss_dssp             EEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHH
Confidence            38899999999987 2                34677888899999987 899999998888776532 34689999999


Q ss_pred             ccCCeEEEEE
Q 017983           67 LRPGGFFIWS   76 (363)
Q Consensus        67 LrPGG~~~~s   76 (363)
                      |||||++++.
T Consensus       130 LkpgG~~~l~  139 (203)
T 1pjz_A          130 MPQACSGLLI  139 (203)
T ss_dssp             SCSEEEEEEE
T ss_pred             cCCCcEEEEE
Confidence            9999984443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.54  E-value=6.5e-08  Score=95.70  Aligned_cols=117  Identities=12%  Similarity=0.136  Sum_probs=75.3

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCC---C-CCcceeee
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTY---P-RTYDLLHS  288 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpf---p-~sFDlVh~  288 (363)
                      .+|||+|||+|+|+..++..+..  .|+++|.+ .+++.|.+.    |+    +.++...+...++.   . .+||+|++
T Consensus       214 ~~VLDl~cGtG~~sl~la~~ga~--~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~  291 (385)
T 2b78_A          214 KTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  291 (385)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CeEEEEeeccCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence            59999999999999999986542  46777887 788776654    32    22333323333332   2 58999998


Q ss_pred             cccc-----ccccc-cCCHHHHHHHHhHhccCCeEEEEEcCH------HHHHHHHHHHHhCCce
Q 017983          289 SFLL-----SDVTQ-RCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSLQWS  340 (363)
Q Consensus       289 ~~~l-----~~~~~-~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l~W~  340 (363)
                      .--.     .+..+ ...+..++.++.++|+|||.++++...      ...+.+++.+.....+
T Consensus       292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence            4211     11111 112455788889999999999998532      3455566666666555

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.53  E-value=5.9e-08  Score=99.11  Aligned_cols=102  Identities=14%  Similarity=0.179  Sum_probs=66.1

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC--CCCCcceeeec-
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT--YPRTYDLLHSS-  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp--fp~sFDlVh~~-  289 (363)
                      ...+|||+|||+|+.+..|+..-.....|+++|.+ .+++.+.++    |+  +.+.+..+.. ++  ++++||+|++. 
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~-~~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV-FGAAVPEMFDAILLDA  195 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTT-HHHHSTTCEEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHH-hhhhccccCCEEEECC
Confidence            34699999999999998888731001136788988 788776655    43  3333322222 33  24899999972 


Q ss_pred             -----cccccccccC-------------CHHHHHHHHhHhccCCeEEEEEc
Q 017983          290 -----FLLSDVTQRC-------------DIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       290 -----~~l~~~~~~~-------------~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                           .++.+-++..             ....+|.++.|+|||||+++++.
T Consensus       196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence                 2333211100             01468999999999999999974

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.52  E-value=4.2e-07  Score=84.26  Aligned_cols=113  Identities=11%  Similarity=0.091  Sum_probs=82.7

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCCCC-C-Ccceeeecc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTYP-R-TYDLLHSSF  290 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lpfp-~-sFDlVh~~~  290 (363)
                      .+|||+|||+|.++.+|+..+. ...|+++|.+ .+++.|.+.    |+   +.+. .|.   .-+++ + .||+|+...
T Consensus        17 ~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~---l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           17 AILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG---LAAFEETDQVSVITIAG   92 (225)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG---GGGCCGGGCCCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECch---hhhcccCcCCCEEEEcC
Confidence            5999999999999999998652 3357888888 777776654    33   3333 332   22455 4 699988765


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      +--.     .+..+|.+..+.|+|||+++++-. .-...+++.+....|...-.
T Consensus        93 ~Gg~-----~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           93 MGGR-----LIARILEEGLGKLANVERLILQPN-NREDDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             ECHH-----HHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHHHTTEEEEEE
T ss_pred             CChH-----HHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHHHCCCEEEEE
Confidence            4331     256799999999999999999866 45678888888889987654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.52  E-value=2.7e-07  Score=83.08  Aligned_cols=122  Identities=16%  Similarity=0.178  Sum_probs=81.5

Q ss_pred             CCCCHHHHHHHHHcCC---CceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeCCCC
Q 017983            6 KDEHEAQIQFALERGI---PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~---p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      -|.++.+++.|+++-.   .+.+...+...+|++ ++||+|+|+.+++|+.+.. ..+|.|+.|+|||||+|+++.+...
T Consensus        74 vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  152 (234)
T 3dtn_A           74 VDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG  152 (234)
T ss_dssp             EESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             EECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence            4889999999998832   466777889999999 9999999999998886422 2489999999999999999865321


Q ss_pred             CCChhh----HHHH-----------------------------HHHHHHHhhcceEEEEEecCCCceeEEEEecCCCChh
Q 017983           82 RHDDRH----RSVW-----------------------------NAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSC  128 (363)
Q Consensus        82 ~~~~e~----~~~~-----------------------------~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~~~c  128 (363)
                       ..+..    ...|                             ..+..+.+...++.+.-....-..++-+=.|+..++.
T Consensus       153 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~  231 (234)
T 3dtn_A          153 -ETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKTEGHHH  231 (234)
T ss_dssp             -SSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC-----
T ss_pred             -CChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEecccccc
Confidence             11110    0111                             3556688888998887654433333444444444444


Q ss_pred             c
Q 017983          129 Y  129 (363)
Q Consensus       129 ~  129 (363)
                      |
T Consensus       232 ~  232 (234)
T 3dtn_A          232 H  232 (234)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.52  E-value=6.2e-07  Score=84.36  Aligned_cols=128  Identities=14%  Similarity=-0.012  Sum_probs=90.3

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-ee-eeccccccCCCCCCCcceeeeccc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IG-MYHDWCESFNTYPRTYDLLHSSFL  291 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~-~~~d~~e~~lpfp~sFDlVh~~~~  291 (363)
                      +...+|||+|||+|-|+..+. ...   .+.++|.+ .|++++...    |. .. ...|.  ...|.|.+||+|.+.-+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~---~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~--~~~~~~~~~DvvLllk~  177 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIA---SVWGCDIHQGLGDVITPFAREKDWDFTFALQDV--LCAPPAEAGDLALIFKL  177 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCS---EEEEEESBHHHHHHHHHHHHHTTCEEEEEECCT--TTSCCCCBCSEEEEESC
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCC---eEEEEeCCHHHHHHHHHHHHhcCCCceEEEeec--ccCCCCCCcchHHHHHH
Confidence            456799999999999999887 222   36788988 788877766    32 11 22332  23456699999999988


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCH-----------HHHHHHHHHHHhCCceeeee---cceEEEEEec
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------EMINKLKPVLHSLQWSTNIY---HDQFLVGKKG  354 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------~~~~~i~~l~~~l~W~~~~~---~~~~li~~K~  354 (363)
                      ++|+.+...  ..+.++.+-|+|+|.++-.+..           .....+++.+..--|.+...   .|-+.+.+|.
T Consensus       178 lh~LE~q~~--~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~nEl~~~i~~~  252 (253)
T 3frh_A          178 LPLLEREQA--GSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIGTELIYLIKKN  252 (253)
T ss_dssp             HHHHHHHST--THHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEETTEEEEEEEEC
T ss_pred             HHHhhhhch--hhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecCceEEEEEecC
Confidence            888865432  2555888899999999888721           24566777777788876554   6667776663

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.52  E-value=3.4e-08  Score=89.75  Aligned_cols=103  Identities=14%  Similarity=0.100  Sum_probs=73.9

Q ss_pred             CCCCHHHHHHHHHcCC---CceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeCCCC
Q 017983            6 KDEHEAQIQFALERGI---PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~---p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      -|.++.+++.|+++..   .+.+...+...+||++++||+|+|+.+++|+++ +...+|.++.|+|||||+|+++.+...
T Consensus       122 vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  201 (254)
T 1xtp_A          122 LEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST  201 (254)
T ss_dssp             EESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred             EeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence            4789999999998842   356667778889999999999999999988853 346899999999999999999875211


Q ss_pred             CC-------ChhhHHHHHHHHHHHhhcceEEEEE
Q 017983           82 RH-------DDRHRSVWNAMVNLTESMCWKAVAR  108 (363)
Q Consensus        82 ~~-------~~e~~~~~~~~~~l~~~~cw~~~~~  108 (363)
                      ..       ..........+..+.+...++.+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  235 (254)
T 1xtp_A          202 GDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             -CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             cccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence            00       0000001245566666667766554

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.52  E-value=7.5e-08  Score=94.86  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=75.6

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCC----CCCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTY----PRTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpf----p~sFDlVh~~  289 (363)
                      ..+|||+|||+|+|+..++..   ...|+++|.+ .+++.+.+.    |+  +.++...+...++.    .++||+|++.
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            469999999999999999876   3468888988 788776654    33  33333333332332    3689999985


Q ss_pred             ccccccc------ccCCHHHHHHHHhHhccCCeEEEEEcCH------HHHHHHHHHHHhCCce
Q 017983          290 FLLSDVT------QRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSLQWS  340 (363)
Q Consensus       290 ~~l~~~~------~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l~W~  340 (363)
                      --.....      .......++.++.++|+|||.++++...      .....+.+.+.....+
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  349 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRL  349 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence            2111000      0023467899999999999999998542      2344555555554433

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.51  E-value=3.4e-08  Score=89.77  Aligned_cols=71  Identities=14%  Similarity=0.126  Sum_probs=59.9

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCC--CCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKL--TFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~L--Pfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|.++   +.+...++..+  ||++++||+|+|+.+++|+.+. ...+|.++.|+|||||+|+++.+.
T Consensus        69 vD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A           69 VDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             ECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             EECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            48899999999988   55666666664  9999999999999999888742 258999999999999999999773

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.51  E-value=3e-07  Score=87.46  Aligned_cols=129  Identities=11%  Similarity=0.043  Sum_probs=87.9

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Ccee--eeccccccCCCCCCCcceeeecccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG--MYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~~--~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ...+|||+|||+|-|+..+...... ..+.++|.. .|++++.+.    |+..  ...|..  .-+.+..||+|++.-++
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~-a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~--~~~p~~~~DvaL~lkti  208 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAE-TVYIASDIDARLVGFVDEALTRLNVPHRTNVADLL--EDRLDEPADVTLLLKTL  208 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTT-CEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTT--TSCCCSCCSEEEETTCH
T ss_pred             CCceeeeeccCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeec--ccCCCCCcchHHHHHHH
Confidence            3679999999999999888765211 136778888 788877666    3321  223321  12334999999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC-----------HHHHHHHHHHHHhCCceeeee---cceEEEEEe
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LEMINKLKPVLHSLQWSTNIY---HDQFLVGKK  353 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~~~~~i~~l~~~l~W~~~~~---~~~~li~~K  353 (363)
                      +|+.+... . .+.++..-|+|||.||-.+.           ..+...+++.+..-.|.+...   .|.+.|.+|
T Consensus       209 ~~Le~q~k-g-~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~nEl~y~i~k  281 (281)
T 3lcv_B          209 PCLETQQR-G-SGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIGNELIYVIQK  281 (281)
T ss_dssp             HHHHHHST-T-HHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEC-
T ss_pred             HHhhhhhh-H-HHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeecCeeEEEecC
Confidence            99865432 2 44499999999999998886           225667788777666754333   555555443

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.51  E-value=7.5e-08  Score=91.38  Aligned_cols=94  Identities=12%  Similarity=0.128  Sum_probs=59.8

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c---eeeeccccccCCCCC-CCcceeeecc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l---~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      +..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++.    .   +.+++..   .+.++ .+||+|+++.
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D---~~~~~~~~fD~vv~nl  101 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGD---VLKTDLPFFDTCVANL  101 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESC---TTTSCCCCCSEEEEEC
T ss_pred             CCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcc---eecccchhhcEEEEec
Confidence            346999999999999999998754   46778888 7888877652    1   3333332   23334 5899999963


Q ss_pred             c-----------cccccccCCHHH-HHHHH--hHhccCCeEEE
Q 017983          291 L-----------LSDVTQRCDIAD-VAVEM--DRILRPGGYVL  319 (363)
Q Consensus       291 ~-----------l~~~~~~~~~~~-~L~Em--~RVLRPGG~li  319 (363)
                      .           ++|.+....... +-+|+  .|+|||||.++
T Consensus       102 py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A          102 PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            3           333221111000 00455  48999999875

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.50  E-value=9.1e-08  Score=94.09  Aligned_cols=101  Identities=18%  Similarity=0.165  Sum_probs=75.8

Q ss_pred             CCCCHHHHHHHHHc---------C----CCceeeecccCCC------CCCCCCccEEEeCCcccccccCCCchhhhhccc
Q 017983            6 KDEHEAQIQFALER---------G----IPAILSVIGTQKL------TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRI   66 (363)
Q Consensus         6 ~D~~~~qvq~A~er---------g----~p~~~~~~~~~~L------Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RV   66 (363)
                      -|.++.+++.|+++         |    -.+.+...+++.+      ||++++||+|+|..+++|+. +...+|.|+.|+
T Consensus       114 vD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~  192 (383)
T 4fsd_A          114 VDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLST-NKLALFKEIHRV  192 (383)
T ss_dssp             EECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCS-CHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCC-CHHHHHHHHHHH
Confidence            48899999999987         5    3567777778877      99999999999998887765 467899999999


Q ss_pred             ccCCeEEEEEeCCCCCCChhh----HHH----------HHHHHHHHhhcceEEEE
Q 017983           67 LRPGGFFIWSATPVYRHDDRH----RSV----------WNAMVNLTESMCWKAVA  107 (363)
Q Consensus        67 LrPGG~~~~s~~~~~~~~~e~----~~~----------~~~~~~l~~~~cw~~~~  107 (363)
                      |||||+|+++.+......++.    ...          +..+..+.+...++.+.
T Consensus       193 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~  247 (383)
T 4fsd_A          193 LRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVR  247 (383)
T ss_dssp             EEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCEE
T ss_pred             cCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceEE
Confidence            999999999854322221111    111          25677788888886554

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.49  E-value=3e-07  Score=82.03  Aligned_cols=73  Identities=21%  Similarity=0.316  Sum_probs=61.1

Q ss_pred             CCCCHHHHHHHHHc----CC------CceeeecccCCCCCCCCCccEEEeCCcccccccCCC---chhhhhcccccCCeE
Q 017983            6 KDEHEAQIQFALER----GI------PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGG---KPLLELNRILRPGGF   72 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~------p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~---~~l~E~~RVLrPGG~   72 (363)
                      -|.++.+++.|+++    ++      .+.+...+...+|+++++||+|+|+.+++|+.+ ..   .+|.++.|+|||||+
T Consensus        58 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-~~~~~~~l~~~~~~L~pgG~  136 (235)
T 3sm3_A           58 IDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPD-PKERSRIIKEVFRVLKPGAY  136 (235)
T ss_dssp             EESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCC-HHHHHHHHHHHHHHEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcchhhcCCC-HHHHHHHHHHHHHHcCCCeE
Confidence            48899999999986    33      246677788899999999999999998888764 33   799999999999999


Q ss_pred             EEEEeCC
Q 017983           73 FIWSATP   79 (363)
Q Consensus        73 ~~~s~~~   79 (363)
                      ++++.+.
T Consensus       137 l~~~~~~  143 (235)
T 3sm3_A          137 LYLVEFG  143 (235)
T ss_dssp             EEEEEEB
T ss_pred             EEEEECC
Confidence            9998653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.49  E-value=9.1e-07  Score=82.99  Aligned_cols=113  Identities=10%  Similarity=0.052  Sum_probs=81.8

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCCCCC-Ccceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTYPR-TYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lpfp~-sFDlVh~~~~  291 (363)
                      .+|||+|||+|.++.+|+..+. ...|+++|.+ .+++.|.+.    |+   +.+. .|..+  ...++ .||+|+...+
T Consensus        23 ~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~--~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           23 ERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLA--VIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG--GCCGGGCCCEEEEEEE
T ss_pred             CEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhh--ccCccccccEEEEeCC
Confidence            5999999999999999998752 3357888988 788777665    44   3333 33221  22344 6999887655


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeee
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~  343 (363)
                      .-.     -+..+|.+..+.|+++|+|+++-.. -...+++.+....|...-
T Consensus       100 Gg~-----lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~~~Gf~i~~  145 (244)
T 3gnl_A          100 GGT-----LIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSEQNNWLITS  145 (244)
T ss_dssp             CHH-----HHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHHTEEEEE
T ss_pred             chH-----HHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHHHCCCEEEE
Confidence            432     2567999999999999999999754 366788888888888644

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.48  E-value=7e-07  Score=83.06  Aligned_cols=114  Identities=11%  Similarity=0.040  Sum_probs=83.6

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCCCC-CCcceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      .+|||+|||+|.++.+|+..+. ...|+++|.+ .+++.|.+.    |+   +.+. .|..+  ...+ +.||+|+...+
T Consensus        23 ~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~--~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           23 ARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLS--AFEEADNIDTITICGM   99 (230)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG--GCCGGGCCCEEEEEEE
T ss_pred             CEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh--ccccccccCEEEEeCC
Confidence            6999999999999999998752 3357888988 778777654    33   3333 33222  2234 47999887655


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      .-.     .+..+|.+..+.|+++|+|+++-... ...+++.+....|...-+
T Consensus       100 Gg~-----lI~~IL~~~~~~l~~~~~lIlqp~~~-~~~lr~~L~~~Gf~i~~E  146 (230)
T 3lec_A          100 GGR-----LIADILNNDIDKLQHVKTLVLQPNNR-EDDLRKWLAANDFEIVAE  146 (230)
T ss_dssp             CHH-----HHHHHHHHTGGGGTTCCEEEEEESSC-HHHHHHHHHHTTEEEEEE
T ss_pred             chH-----HHHHHHHHHHHHhCcCCEEEEECCCC-hHHHHHHHHHCCCEEEEE
Confidence            442     25679999999999999999997543 678888888899987665

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.48  E-value=7.5e-08  Score=98.06  Aligned_cols=118  Identities=13%  Similarity=0.150  Sum_probs=72.2

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCC-CCCCcceeee----
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNT-YPRTYDLLHS----  288 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lp-fp~sFDlVh~----  288 (363)
                      +..+|||+|||+|+.+..|+..-.....|+++|.+ .+++.+.++    |+ +.+.+........ ++++||+|++    
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~Pc  180 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPC  180 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCC
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCc
Confidence            34699999999999999888631001136788988 788777655    43 2233322222122 3489999995    


Q ss_pred             c--ccccccccc------CCH-------HHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHHhC
Q 017983          289 S--FLLSDVTQR------CDI-------ADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHSL  337 (363)
Q Consensus       289 ~--~~l~~~~~~------~~~-------~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~l  337 (363)
                      +  .++.+-++.      .++       ..+|.++.|+|||||+++++.-    .+.-..++.+++..
T Consensus       181 Sg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~  248 (464)
T 3m6w_A          181 SGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAH  248 (464)
T ss_dssp             CCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             CCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHC
Confidence            2  223321111      111       6789999999999999999642    22334555555543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.48  E-value=1.1e-07  Score=94.02  Aligned_cols=101  Identities=14%  Similarity=0.084  Sum_probs=66.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCC----CCCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTY----PRTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpf----p~sFDlVh~  288 (363)
                      ..+|||+|||+|+|+..++..+..  .|+++|.+ .+++.+.+.    |+   +..+...+...++.    .++||+|++
T Consensus       218 ~~~VLDl~~G~G~~~~~la~~g~~--~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          218 GDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            469999999999999999987532  46777887 777766554    32   22333223322332    368999998


Q ss_pred             cccccccc------ccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          289 SFLLSDVT------QRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       289 ~~~l~~~~------~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      .--.....      .......++.++.++|||||.+++...
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            52111000      002356789999999999999988743

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.47  E-value=4.5e-08  Score=96.64  Aligned_cols=116  Identities=13%  Similarity=0.082  Sum_probs=84.5

Q ss_pred             CCCCHHHHHHHHHcCCCceee---ecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCC-
Q 017983            6 KDEHEAQIQFALERGIPAILS---VIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVY-   81 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~---~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~-   81 (363)
                      -|.|+.+++.|+++|++....   ..+++.+||++++||+|+|..+++|+. +...+|.|+.|+|||||+|+++.|... 
T Consensus       135 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~  213 (416)
T 4e2x_A          135 FEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIP-YVQSVLEGVDALLAPDGVFVFEDPYLGD  213 (416)
T ss_dssp             ECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCT-THHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             ECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhcC-CHHHHHHHHHHHcCCCeEEEEEeCChHH
Confidence            389999999999998875542   233677899999999999999998887 477899999999999999999876310 


Q ss_pred             -------C-CChhh--HHHHHHHHHHHhhcceEEEEEec-CCCceeEEEEec
Q 017983           82 -------R-HDDRH--RSVWNAMVNLTESMCWKAVARSV-DSNRIGFVIYQK  122 (363)
Q Consensus        82 -------~-~~~e~--~~~~~~~~~l~~~~cw~~~~~~~-~~~~~~~~i~~k  122 (363)
                             . .+.+.  ......+..++++..++.+.... ...++.+.+|-.
T Consensus       214 ~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~~~~g~l~~~~~  265 (416)
T 4e2x_A          214 IVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRLPVHGGEVRYTLA  265 (416)
T ss_dssp             HHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEECGGGSEEEEEEE
T ss_pred             hhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEccCCCCEEEEEEE
Confidence                   0 00000  00135788888999998877543 233566666643

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.47  E-value=2e-07  Score=90.24  Aligned_cols=118  Identities=12%  Similarity=0.103  Sum_probs=76.7

Q ss_pred             CCceEEEecccccHHHHHhhcCCC----eEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPL----WVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHS  288 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v----~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~  288 (363)
                      ...+|||+|||+|+|+..+++...    ....+.++|.+ .++.+|...    |+ +.+++..  ...+.+ ..||+|++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D--~l~~~~~~~fD~Ii~  207 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD--GLANLLVDPVDVVIS  207 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESC--TTSCCCCCCEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECC--CCCccccCCccEEEE
Confidence            457999999999999988875421    12467888888 777777654    43 2223221  123455 89999999


Q ss_pred             ccccccccccC--------------CH-HHHHHHHhHhccCCeEEEEEcC-----HHHHHHHHHHHHhCCc
Q 017983          289 SFLLSDVTQRC--------------DI-ADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQW  339 (363)
Q Consensus       289 ~~~l~~~~~~~--------------~~-~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W  339 (363)
                      +--|.+++...              +. ..++.++.+.|||||++++...     ...-..+++.+..-.|
T Consensus       208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~  278 (344)
T 2f8l_A          208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH  278 (344)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred             CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe
Confidence            97766543210              01 2479999999999999888752     2223556665544444

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.47  E-value=7.7e-08  Score=102.48  Aligned_cols=102  Identities=15%  Similarity=0.207  Sum_probs=71.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCCC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|+|+.+++..+..  .|+.+|.+ .+++.+.+.    |+    +..++..+...++.. ++||+|++.-
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             CCcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            359999999999999999886643  46788888 788877664    32    223333333345555 8999999853


Q ss_pred             c-cc-------cccccCCHHHHHHHHhHhccCCeEEEEEcCH
Q 017983          291 L-LS-------DVTQRCDIADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       291 ~-l~-------~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      - |.       .+........++.++.|+|||||+++++...
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            1 11       0111123567899999999999999998654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.47  E-value=9.9e-08  Score=90.61  Aligned_cols=71  Identities=18%  Similarity=0.118  Sum_probs=61.9

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|+++.+++.|+++    |++  +.+...+++.+||++++||+|+|..+++|+ + ...+|.++.|+|||||++++..+
T Consensus       146 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~-~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          146 VTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-D-LHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGS-C-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhhC-C-HHHHHHHHHHHcCCCcEEEEEEc
Confidence            37899999999875    554  777888899999999999999999998887 3 66899999999999999999865

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.46  E-value=9.4e-08  Score=86.08  Aligned_cols=72  Identities=22%  Similarity=0.320  Sum_probs=62.0

Q ss_pred             CCCCHHHHHHHHHcCC--CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++..  .+.+...+...+|+++++||+|+|+.+++|+. +...+|.++.|+|||||+++++.+
T Consensus        72 vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A           72 LDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVE-DVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             EESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccc-hHHHHHHHHHHhcCcCcEEEEEeC
Confidence            3789999999998853  35667777888999999999999999888775 466899999999999999999976

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.46  E-value=1.4e-07  Score=93.14  Aligned_cols=116  Identities=16%  Similarity=0.144  Sum_probs=74.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCC----CCCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTY----PRTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpf----p~sFDlVh  287 (363)
                      ..+|||+|||+|+|+..++..+..  .|+++|.+ .+++.+.+.    |+    +.++...+...++.    ..+||+|+
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~g~~--~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEeeccCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            359999999999999999987532  46778888 777766543    32    22333223322321    26899999


Q ss_pred             eccccc-----cc-cccCCHHHHHHHHhHhccCCeEEEEEcCH------HHHHHHHHHHHhCC
Q 017983          288 SSFLLS-----DV-TQRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSLQ  338 (363)
Q Consensus       288 ~~~~l~-----~~-~~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l~  338 (363)
                      +.--..     ++ ........++.++.++|+|||.++++...      ...+.+++.+....
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g  361 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAG  361 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcC
Confidence            862110     00 01134578999999999999999997532      23445554554443

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.45  E-value=7.2e-08  Score=90.76  Aligned_cols=69  Identities=16%  Similarity=0.104  Sum_probs=60.5

Q ss_pred             CCCCHHHHHHHHHc-------CCCceeeecccCCCCCCC------CCccEEEeCCcccccccCCCchhhhhcccccCCeE
Q 017983            6 KDEHEAQIQFALER-------GIPAILSVIGTQKLTFPD------DAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGF   72 (363)
Q Consensus         6 ~D~~~~qvq~A~er-------g~p~~~~~~~~~~LPfpd------~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~   72 (363)
                      -|+|+.+++.|+++       ...+.+.+.+++.+|+++      ++||+|+|+.+++|+  +...++.++.|+|||||+
T Consensus        67 vD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~  144 (299)
T 3g5t_A           67 SDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGT  144 (299)
T ss_dssp             EESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcE
Confidence            38899999999987       345777888899999998      999999999988777  577899999999999999


Q ss_pred             EEEE
Q 017983           73 FIWS   76 (363)
Q Consensus        73 ~~~s   76 (363)
                      |++.
T Consensus       145 l~i~  148 (299)
T 3g5t_A          145 IAIW  148 (299)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9984

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.45  E-value=1e-07  Score=88.17  Aligned_cols=72  Identities=24%  Similarity=0.320  Sum_probs=62.0

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |++ +.+...+...+|+++++||+|+|+.+++|+.+ ...+|.++.|+|||||++++..+
T Consensus        67 vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A           67 IDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQS-PEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhhhcCC-HHHHHHHHHHHcCCCcEEEEEEc
Confidence            37899999999876    554 66677788899999999999999999988764 56899999999999999999865

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.44  E-value=2.9e-07  Score=87.10  Aligned_cols=117  Identities=17%  Similarity=0.122  Sum_probs=83.2

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCC--chhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGG--KPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~--~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.++.+++.|+++    |+.  +.+...++..+||+ ++||+|+|..+++|+++...  .++.++.|+|||||+|+++.
T Consensus       149 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          149 IDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             EESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            38899999999987    333  66778888999999 99999999999988765322  37999999999999999985


Q ss_pred             CCC------CCCC------hhhH------------------HHHHHHHHHHhhcceEEEEEecCCCc-eeEEEEecC
Q 017983           78 TPV------YRHD------DRHR------------------SVWNAMVNLTESMCWKAVARSVDSNR-IGFVIYQKP  123 (363)
Q Consensus        78 ~~~------~~~~------~e~~------------------~~~~~~~~l~~~~cw~~~~~~~~~~~-~~~~i~~k~  123 (363)
                      ...      ...|      +...                  .....+..+.+..+++.+....+..+ ..+.+-+||
T Consensus       228 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp  304 (305)
T 3ocj_A          228 LTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARKP  304 (305)
T ss_dssp             CCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred             cCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence            321      0111      1000                  01456788888899998876543222 245666776

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.43  E-value=4.4e-07  Score=80.94  Aligned_cols=120  Identities=12%  Similarity=-0.004  Sum_probs=82.3

Q ss_pred             CCCCHHHHHHHHHcC----C------CceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEE
Q 017983            6 KDEHEAQIQFALERG----I------PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFI   74 (363)
Q Consensus         6 ~D~~~~qvq~A~erg----~------p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~   74 (363)
                      -|.++.+++.|+++-    +      .+.+...+...+++++++||+|+|+.+++|+.+. ...++.++.|+|||||.++
T Consensus        59 vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i  138 (219)
T 3jwg_A           59 VDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV  138 (219)
T ss_dssp             EESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred             EECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence            488999999998872    2      4566777788899999999999999999888642 1579999999999999666


Q ss_pred             EEeCCCC----CCCh-------------hhHHHHHHHHHHHhhcceEEEEEe-cC----C-CceeEEEEecCCC
Q 017983           75 WSATPVY----RHDD-------------RHRSVWNAMVNLTESMCWKAVARS-VD----S-NRIGFVIYQKPVS  125 (363)
Q Consensus        75 ~s~~~~~----~~~~-------------e~~~~~~~~~~l~~~~cw~~~~~~-~~----~-~~~~~~i~~k~~~  125 (363)
                      .+...-+    ...+             ...+....++.++.+..++..... ++    . ....++||+|...
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~~~  212 (219)
T 3jwg_A          139 STPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVFTLGAG  212 (219)
T ss_dssp             EEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEEEECC-
T ss_pred             EccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccccCCCCeEEEEEeccCC
Confidence            5532111    0111             112333456688888888776541 11    1 1146889988764

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.43  E-value=2e-07  Score=87.44  Aligned_cols=71  Identities=14%  Similarity=0.127  Sum_probs=57.9

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.+|+.|+++    +.  ++.+...++..+||+  .||+|+|..++++.++. ...+|.|+.|+|||||.|+++..
T Consensus       102 vD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          102 IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             EESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence            38999999999987    33  466777788888886  49999999888776542 24689999999999999999865

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.42  E-value=6.8e-08  Score=89.30  Aligned_cols=70  Identities=19%  Similarity=0.171  Sum_probs=60.7

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|+|+.+++.|+++. .+.+.+.+++.+||++++||+|+|+.+++|+. +...+|.|+.|+|| ||++++..+
T Consensus        62 vD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           62 VEPSIVMRQQAVVHP-QVEWFTGYAENLALPDKSVDGVISILAIHHFS-HLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             ECSCHHHHHSSCCCT-TEEEECCCTTSCCSCTTCBSEEEEESCGGGCS-SHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             EeCCHHHHHHHHhcc-CCEEEECchhhCCCCCCCEeEEEEcchHhhcc-CHHHHHHHHHHHhC-CcEEEEEEc
Confidence            388999999887776 67777888999999999999999999998885 46789999999999 998888754

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.41  E-value=1.1e-07  Score=88.48  Aligned_cols=72  Identities=21%  Similarity=0.178  Sum_probs=61.6

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |++  +.+...++..+| |++++||+|+|+.+++|+. +...+|.|+.|+|||||+++++.+
T Consensus        96 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A           96 CDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVA-DPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhccc-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence            48899999999887    542  566777888887 9999999999999988876 456899999999999999999976

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.37  E-value=7.8e-07  Score=79.12  Aligned_cols=95  Identities=16%  Similarity=0.204  Sum_probs=69.2

Q ss_pred             eeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcce
Q 017983           24 ILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCW  103 (363)
Q Consensus        24 ~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw  103 (363)
                      .+...++..+|+++++||+|+|+.+++ + .+...+|.++.|+|||||+++++.+.....      ....+..+.+...+
T Consensus       100 ~~~~~d~~~~~~~~~~fD~v~~~~~l~-~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~------~~~~~~~~l~~~Gf  171 (215)
T 2zfu_A          100 RVTVCDMAQVPLEDESVDVAVFCLSLM-G-TNIRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGF  171 (215)
T ss_dssp             TEEESCTTSCSCCTTCEEEEEEESCCC-S-SCHHHHHHHHHHHEEEEEEEEEEECGGGCS------CHHHHHHHHHHTTE
T ss_pred             eEEEeccccCCCCCCCEeEEEEehhcc-c-cCHHHHHHHHHHhCCCCeEEEEEEcCCCCC------CHHHHHHHHHHCCC
Confidence            345566778999999999999998884 4 456789999999999999999987632111      13466777778888


Q ss_pred             EEEEEecCCCceeEEEEecCCCC
Q 017983          104 KAVARSVDSNRIGFVIYQKPVSY  126 (363)
Q Consensus       104 ~~~~~~~~~~~~~~~i~~k~~~~  126 (363)
                      +.+........-.+.+++|....
T Consensus       172 ~~~~~~~~~~~~~~~~~~k~~~~  194 (215)
T 2zfu_A          172 KIVSKDLTNSHFFLFDFQKTGPP  194 (215)
T ss_dssp             EEEEEECCSTTCEEEEEEECSSC
T ss_pred             EEEEEecCCCeEEEEEEEecCcc
Confidence            88775543333467777776543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.37  E-value=1.6e-07  Score=83.02  Aligned_cols=72  Identities=17%  Similarity=0.150  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHcCCC-ceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|++.|.+ +.+...+...+ +++++||+|+|+.+++|+.+. ...+|.++.|+|||||.++++.+
T Consensus        74 ~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A           74 LDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             EESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            48899999999998844 66667778888 899999999999999887652 15799999999999999999855

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.36  E-value=2.7e-07  Score=86.14  Aligned_cols=71  Identities=13%  Similarity=0.007  Sum_probs=57.8

Q ss_pred             CCCCHHHHHHHHHcC----------------------CCceeeecccCCCCCCC-CCccEEEeCCcccccccC-CCchhh
Q 017983            6 KDEHEAQIQFALERG----------------------IPAILSVIGTQKLTFPD-DAYDLIHCARCRVHWDAQ-GGKPLL   61 (363)
Q Consensus         6 ~D~~~~qvq~A~erg----------------------~p~~~~~~~~~~LPfpd-~sFD~v~cs~~~~~~~~~-~~~~l~   61 (363)
                      -|.|+.+|+.|+++.                      ..+.+.+.++..+|+++ ++||+|++..++++.+.. ...++.
T Consensus        96 vD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~  175 (252)
T 2gb4_A           96 VEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYAD  175 (252)
T ss_dssp             ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHH
T ss_pred             EECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHH
Confidence            389999999998652                      34677788899999975 899999998888776542 246899


Q ss_pred             hhcccccCCeEEEEE
Q 017983           62 ELNRILRPGGFFIWS   76 (363)
Q Consensus        62 E~~RVLrPGG~~~~s   76 (363)
                      ++.|+|||||+|++.
T Consensus       176 ~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          176 IILSLLRKEFQYLVA  190 (252)
T ss_dssp             HHHHTEEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEE
Confidence            999999999999754

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.36  E-value=1.7e-06  Score=82.46  Aligned_cols=134  Identities=12%  Similarity=0.121  Sum_probs=86.4

Q ss_pred             hhccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh----cCc--
Q 017983          193 EAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--  265 (363)
Q Consensus       193 e~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~----Rgl--  265 (363)
                      -.|.......+.++.+ ++     ++  ..+|||+|||+|.|+..++.++..  .|+++|.+ ..++.+.+    .|+  
T Consensus       106 ~~f~~~~~~er~ri~~-~~-----~~--g~~VlD~~aG~G~~~i~~a~~g~~--~V~avD~np~a~~~~~~N~~~N~v~~  175 (278)
T 3k6r_A          106 IMFSPANVKERVRMAK-VA-----KP--DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVED  175 (278)
T ss_dssp             SCCCGGGHHHHHHHHH-HC-----CT--TCEEEETTCTTTTTTHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTT
T ss_pred             eEEcCCcHHHHHHHHH-hc-----CC--CCEEEEecCcCcHHHHHHHHhcCC--eEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            3555666666666654 22     22  359999999999999988876532  35677776 55544433    233  


Q ss_pred             -eeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC-------HHHHHHHHHHHHhC
Q 017983          266 -IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-------LEMINKLKPVLHSL  337 (363)
Q Consensus       266 -~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-------~~~~~~i~~l~~~l  337 (363)
                       +.++...+.. .+..+.||.|++..-..       ...+|.+..++|||||++.+-+.       .+..+.++++++..
T Consensus       176 ~v~~~~~D~~~-~~~~~~~D~Vi~~~p~~-------~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~  247 (278)
T 3k6r_A          176 RMSAYNMDNRD-FPGENIADRILMGYVVR-------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEY  247 (278)
T ss_dssp             TEEEECSCTTT-CCCCSCEEEEEECCCSS-------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred             cEEEEeCcHHH-hccccCCCEEEECCCCc-------HHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHc
Confidence             3444433322 22238999998763221       23478888899999999876432       23467788888888


Q ss_pred             Cceeeee
Q 017983          338 QWSTNIY  344 (363)
Q Consensus       338 ~W~~~~~  344 (363)
                      .+++...
T Consensus       248 g~~v~~~  254 (278)
T 3k6r_A          248 GYDVEKL  254 (278)
T ss_dssp             TCEEEEE
T ss_pred             CCcEEEE
Confidence            8876543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.35  E-value=2.8e-07  Score=81.05  Aligned_cols=71  Identities=18%  Similarity=0.222  Sum_probs=58.9

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccc-cCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWD-AQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~-~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |..+.+...++..+|+++++||+|+|+.  .|++ .+...+|.++.|+|||||+++++.+
T Consensus        57 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  132 (202)
T 2kw5_A           57 VDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPSSLRQQLYPKVYQGLKPGGVFILEGF  132 (202)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            38899999999887    5667777888889999999999999964  4543 2346799999999999999999965

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.35  E-value=1.8e-07  Score=85.09  Aligned_cols=104  Identities=19%  Similarity=0.093  Sum_probs=73.4

Q ss_pred             CCCCHHHHHHHHHcCCC-----ceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALERGIP-----AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p-----~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++.-.     +.+...++..+|+++++||+|+|..+++|+.+. ...+|.++.|+|||||+|+++.+.
T Consensus       108 vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          108 VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             EESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            37899999999988422     456777788899999999999999999887642 137999999999999999998652


Q ss_pred             CCC-----C-ChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           80 VYR-----H-DDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        80 ~~~-----~-~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      ...     . ..........+..+.....++.+...
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  223 (241)
T 2ex4_A          188 AQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  223 (241)
T ss_dssp             BSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence            210     0 00000013456666666777666543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.35  E-value=2.1e-07  Score=94.51  Aligned_cols=119  Identities=12%  Similarity=0.100  Sum_probs=72.5

Q ss_pred             CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC-CCCCcceeeec-
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT-YPRTYDLLHSS-  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp-fp~sFDlVh~~-  289 (363)
                      +..+|||+|||+|+.+..|+.. +- ...|+++|.+ .+++.+.++    |+  +.+.+.......+ ++++||+|++. 
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~-~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da  183 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKG-KGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA  183 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTT-CSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence            3469999999999998888763 10 1136778888 777766554    43  2333322222222 34899999973 


Q ss_pred             -----cccccccc------cCC-------HHHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHHhCCc
Q 017983          290 -----FLLSDVTQ------RCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHSLQW  339 (363)
Q Consensus       290 -----~~l~~~~~------~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~l~W  339 (363)
                           .++.+-++      ..+       ...+|.++.|+|||||+++++.-    .+.-..|+.++++..+
T Consensus       184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~  255 (456)
T 3m4x_A          184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPV  255 (456)
T ss_dssp             CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSE
T ss_pred             CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCC
Confidence                 12222110      000       12689999999999999998642    2334556666665543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.34  E-value=2.4e-07  Score=82.18  Aligned_cols=71  Identities=8%  Similarity=0.091  Sum_probs=59.2

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCC--CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQK--LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~--LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|.++..  .+...+...  +||++++||+|+|+.+++|+.+ ...+|.++.|+|||||+++++.|.
T Consensus        60 ~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           60 IEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD-PWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             EESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESCGGGSSC-HHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             EeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECChhhhcCC-HHHHHHHHHHHcCCCCEEEEEeCC
Confidence            3788999999988764  445556554  8999999999999999988764 568999999999999999999873

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.34  E-value=1.4e-07  Score=83.66  Aligned_cols=102  Identities=21%  Similarity=0.182  Sum_probs=73.6

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeCCCCCCC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSATPVYRHD   84 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~   84 (363)
                      -|.++.+++.|.++- .+.+...+...+| ++++||+|+|+.+++|+.. +...+|.++.|+|||||+|+++.+......
T Consensus        71 vD~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  148 (211)
T 3e23_A           71 TDGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEG  148 (211)
T ss_dssp             EESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCE
T ss_pred             ECCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccc
Confidence            488999999999882 2344556778888 8999999999999988862 345799999999999999999966432111


Q ss_pred             hhh------HHHHHHHHHHHhhcc-eEEEEEe
Q 017983           85 DRH------RSVWNAMVNLTESMC-WKAVARS  109 (363)
Q Consensus        85 ~e~------~~~~~~~~~l~~~~c-w~~~~~~  109 (363)
                      .+.      ......+..+.+... ++.+...
T Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~  180 (211)
T 3e23_A          149 RDKLARYYNYPSEEWLRARYAEAGTWASVAVE  180 (211)
T ss_dssp             ECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred             ccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence            000      001346777777777 7776643

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.33  E-value=9e-07  Score=85.79  Aligned_cols=89  Identities=16%  Similarity=0.110  Sum_probs=62.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.|+.. +....   .|+++|.+ .+++.+.+.    |+   +..++..+...+   ++||+|++.--.
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~~~~---~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~  268 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CKNAK---KIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK  268 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TTTSS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred             CCEEEEccCccCHHHHh-ccCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence            35999999999999999 77432   46777887 677766554    32   334443333322   899999986211


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      .       ...++.++.++|+|||.+++.+.
T Consensus       269 ~-------~~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          269 F-------AHKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             T-------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             h-------HHHHHHHHHHHcCCCCEEEEEEe
Confidence            1       13589999999999999998753

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.33  E-value=1.5e-06  Score=77.92  Aligned_cols=72  Identities=14%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCC-cccccc--cCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCAR-CRVHWD--AQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~-~~~~~~--~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++.-.+.+...+...+|+ +++||+|+|+. +++|..  ++...+|.++.|+|||||+++++.+
T Consensus        68 ~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A           68 LELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             EESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             EeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            488999999999986556777888888988 78999999876 555543  2335799999999999999999854

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.33  E-value=2.1e-07  Score=89.07  Aligned_cols=73  Identities=12%  Similarity=0.054  Sum_probs=54.4

Q ss_pred             CCCCHHHHHHHHHc----CCC-------ceeeeccc------CCC--CCCCCCccEEEeCCccccc-c-cCCCchhhhhc
Q 017983            6 KDEHEAQIQFALER----GIP-------AILSVIGT------QKL--TFPDDAYDLIHCARCRVHW-D-AQGGKPLLELN   64 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-------~~~~~~~~------~~L--Pfpd~sFD~v~cs~~~~~~-~-~~~~~~l~E~~   64 (363)
                      -|+|+.+|+.|++|    +..       +.+.+.+.      +.|  +|++++||+|.|..++++. . .+...+|.++.
T Consensus        77 iD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~  156 (302)
T 2vdw_A           77 TDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLS  156 (302)
T ss_dssp             EESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHH
Confidence            38999999999987    321       22333433      334  5889999999999887543 2 22357999999


Q ss_pred             ccccCCeEEEEEeC
Q 017983           65 RILRPGGFFIWSAT   78 (363)
Q Consensus        65 RVLrPGG~~~~s~~   78 (363)
                      |+|||||+|+++.+
T Consensus       157 r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          157 ELTASGGKVLITTM  170 (302)
T ss_dssp             HHEEEEEEEEEEEE
T ss_pred             HHcCCCCEEEEEeC
Confidence            99999999999987

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.33  E-value=3e-07  Score=81.70  Aligned_cols=72  Identities=17%  Similarity=0.256  Sum_probs=60.1

Q ss_pred             CCCCHHHHHHHHHcCC---CceeeecccCCCCCCCCCccEEEeCCcccccccCC--CchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGI---PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG--GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~---p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~--~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++..   .+.+...+...++ ++++||+|+|+.+++|+.+..  ..+|.++.|+|||||+|+++.+
T Consensus        79 vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A           79 IDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             EESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            4889999999998842   3577778888888 789999999999988876421  4679999999999999999876

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.32  E-value=1.4e-07  Score=87.97  Aligned_cols=73  Identities=18%  Similarity=0.347  Sum_probs=59.4

Q ss_pred             CCCCHHHHHHHHHcC---------CCceeeecccCCCC---CCCCCccEEEeC-Cccccccc------CCCchhhhhccc
Q 017983            6 KDEHEAQIQFALERG---------IPAILSVIGTQKLT---FPDDAYDLIHCA-RCRVHWDA------QGGKPLLELNRI   66 (363)
Q Consensus         6 ~D~~~~qvq~A~erg---------~p~~~~~~~~~~LP---fpd~sFD~v~cs-~~~~~~~~------~~~~~l~E~~RV   66 (363)
                      -|+|+.+++.|+++.         ..+.+...+...+|   |++++||+|+|. .+++|+.+      +...+|.++.|+
T Consensus        85 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~  164 (293)
T 3thr_A           85 VDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASM  164 (293)
T ss_dssp             EESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHT
T ss_pred             EECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHH
Confidence            488999999998752         22445566777888   999999999998 78877764      145799999999


Q ss_pred             ccCCeEEEEEeC
Q 017983           67 LRPGGFFIWSAT   78 (363)
Q Consensus        67 LrPGG~~~~s~~   78 (363)
                      |||||+|+++.+
T Consensus       165 LkpgG~l~~~~~  176 (293)
T 3thr_A          165 VRPGGLLVIDHR  176 (293)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cCCCeEEEEEeC
Confidence            999999999977

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.32  E-value=3.6e-07  Score=85.54  Aligned_cols=72  Identities=18%  Similarity=0.195  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++    +..+.+.+.++..+|++ ++||+|+|+.+++|+.+ ...+|.++.|+|||||+|++..+.
T Consensus        53 vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           53 IDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTT-PETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCGGGCSS-HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECChhhcCCC-HHHHHHHHHHHcCCCCEEEEEecc
Confidence            37899999999887    33467777888899995 69999999998887764 568999999999999999999874

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.31  E-value=3.5e-07  Score=82.12  Aligned_cols=72  Identities=21%  Similarity=0.301  Sum_probs=60.7

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCC-cccccc--cCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCAR-CRVHWD--AQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~-~~~~~~--~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    +..+.+.+.+...+|++ ++||+|+|+. +++|+.  .+...+|.++.|+|||||+|+++.+
T Consensus        65 ~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (246)
T 1y8c_A           65 VDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            38899999999877    34567777888889998 9999999998 888873  2356899999999999999999876

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.30  E-value=4.9e-07  Score=83.30  Aligned_cols=65  Identities=26%  Similarity=0.363  Sum_probs=57.2

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|.+++..+.+.+.+++.+||++++||+|+|..+        ..++.|+.|+|||||++++..+
T Consensus       115 vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--------~~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          115 LDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA--------PCKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC--------CCCHHHHHHHEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC--------hhhHHHHHHhcCCCcEEEEEEc
Confidence            4889999999999986677888888999999999999998533        2579999999999999999977

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.30  E-value=5.9e-06  Score=82.78  Aligned_cols=111  Identities=20%  Similarity=0.262  Sum_probs=72.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccC---CCCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESF---NTYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~---lpfp-~sFDlVh~~  289 (363)
                      ..+|||+|||+|.|+..|+....   .|+++|.+ .+++.|.+.    |+  +.++....+..   +|++ ++||+|++.
T Consensus       287 ~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          287 EDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             TCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            45999999999999999998743   46788888 788777654    32  33333323332   3466 799999985


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCcee
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST  341 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~  341 (363)
                      -      .+.....++..+.+ ++|++.++++-....+.+-..++....|+.
T Consensus       364 P------Pr~g~~~~~~~l~~-~~p~~ivyvsc~p~tlard~~~l~~~Gy~~  408 (433)
T 1uwv_A          364 P------ARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTI  408 (433)
T ss_dssp             C------CTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHHTTCEE
T ss_pred             C------CCccHHHHHHHHHh-cCCCeEEEEECChHHHHhhHHHHHHCCcEE
Confidence            2      12222345555544 899999999988776554444444344554

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.29  E-value=3.4e-07  Score=81.02  Aligned_cols=70  Identities=20%  Similarity=0.274  Sum_probs=56.0

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCC---CCCCCC-ccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKL---TFPDDA-YDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~L---Pfpd~s-FD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|++++ ...+...+...+   |++++. ||+|+|+.+++  ..+...+|.++.|+|||||+|+++.+
T Consensus        80 vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~--~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A           80 VDGDRTLVDAARAAG-AGEVHLASYAQLAEAKVPVGKDYDLICANFALL--HQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             EESCHHHHHHHHHTC-SSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC--SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EcCCHHHHHHHHHhc-ccccchhhHHhhcccccccCCCccEEEECchhh--hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            388999999999993 344555555454   766555 99999998887  44577899999999999999999976

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.29  E-value=8.7e-07  Score=80.00  Aligned_cols=103  Identities=17%  Similarity=0.103  Sum_probs=74.6

Q ss_pred             CCCCHHHHHHHHHcCCC------ceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIP------AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p------~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|+++.+++.|+++.-.      +.+.+.+...++ ++++||+|+|+.+++|++. +...+|.++.|+|||||+|++...
T Consensus        94 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A           94 LDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             ECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence            48899999999988422      567777788877 5579999999998888763 346799999999999999999755


Q ss_pred             CCCCC--ChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           79 PVYRH--DDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        79 ~~~~~--~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      +....  .+........+..+.....|+.+.-.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  205 (235)
T 3lcc_A          173 PITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE  205 (235)
T ss_dssp             CCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred             cccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence            32210  00000113567888888889877643

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.26  E-value=2.1e-08  Score=92.56  Aligned_cols=94  Identities=11%  Similarity=0.090  Sum_probs=60.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC--CCcceeeecc---
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP--RTYDLLHSSF---  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp--~sFDlVh~~~---  290 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++.    -+.+++.... .++++  ++| .|+++-   
T Consensus        30 ~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~-~~~~~~~~~f-~vv~n~Py~  104 (245)
T 1yub_A           30 TDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDIL-QFQFPNKQRY-KIVGNIPYH  104 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCT-TTTCCCSSEE-EEEEECCSS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhccCCceEEEECChh-hcCcccCCCc-EEEEeCCcc
Confidence            46999999999999999988753   47788887 7777665542    1333333232 35666  578 666642   


Q ss_pred             --------ccccccccCCHHHHH----HHHhHhccCCeEEEEEc
Q 017983          291 --------LLSDVTQRCDIADVA----VEMDRILRPGGYVLVQD  322 (363)
Q Consensus       291 --------~l~~~~~~~~~~~~L----~Em~RVLRPGG~lii~D  322 (363)
                              ++.|...   ...++    .++.|+|||||.+.+..
T Consensus       105 ~~~~~~~~~~~~~~~---~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          105 LSTQIIKKVVFESRA---SDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             SCHHHHHHHHHHCCC---EEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             ccHHHHHHHHhCCCC---CeEEEEeeHHHHHHHhCCCCchhhhh
Confidence                    1222111   12244    66999999999876643

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.25  E-value=3.4e-07  Score=83.17  Aligned_cols=71  Identities=17%  Similarity=0.093  Sum_probs=54.5

Q ss_pred             CCCCHHHHHHHHHcC----CCceeeecccCCC--CCCCCCccEEEe-CCcccccccC----CCchhhhhcccccCCeEEE
Q 017983            6 KDEHEAQIQFALERG----IPAILSVIGTQKL--TFPDDAYDLIHC-ARCRVHWDAQ----GGKPLLELNRILRPGGFFI   74 (363)
Q Consensus         6 ~D~~~~qvq~A~erg----~p~~~~~~~~~~L--Pfpd~sFD~v~c-s~~~~~~~~~----~~~~l~E~~RVLrPGG~~~   74 (363)
                      -|.|+.+++.|+++.    ..+.+...+++.+  ||++++||+|+| ...+ +.+.-    ...++.|+.|+|||||+|+
T Consensus        89 vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~  167 (236)
T 1zx0_A           89 IECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLT  167 (236)
T ss_dssp             EECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred             EcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEE
Confidence            488999999999873    4466677777778  999999999999 5543 22211    1246999999999999999


Q ss_pred             EEe
Q 017983           75 WSA   77 (363)
Q Consensus        75 ~s~   77 (363)
                      +..
T Consensus       168 ~~~  170 (236)
T 1zx0_A          168 YCN  170 (236)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            863

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.25  E-value=4.5e-07  Score=84.88  Aligned_cols=52  Identities=19%  Similarity=0.252  Sum_probs=40.5

Q ss_pred             eecccCC-CCCC-----CCCccEEEeCCccccccc---CCCchhhhhcccccCCeEEEEEe
Q 017983           26 SVIGTQK-LTFP-----DDAYDLIHCARCRVHWDA---QGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus        26 ~~~~~~~-LPfp-----d~sFD~v~cs~~~~~~~~---~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      ...++.. +||+     +++||+|+|+.+++|...   +...+|.|+.|+|||||+|+++.
T Consensus       155 ~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          155 LPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             ECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            3446666 7754     567999999998877432   35689999999999999999974

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.24  E-value=2.9e-06  Score=85.29  Aligned_cols=95  Identities=15%  Similarity=0.169  Sum_probs=64.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCCCCcceeeecccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYPRTYDLLHSSFLLSD  294 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp~sFDlVh~~~~l~~  294 (363)
                      ..+|||+|||+|.|+..|++.+.   .|+++|.+ .+++.|.++    |+ +..+...++..+  +.+||+|++.--.. 
T Consensus       291 ~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~--~~~fD~Vv~dPPr~-  364 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVS--VKGFDTVIVDPPRA-  364 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCC--CTTCSEEEECCCTT-
T ss_pred             CCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcC--ccCCCEEEEcCCcc-
Confidence            46999999999999999998754   46778888 788777654    32 333333233221  25899999863221 


Q ss_pred             ccccCCH-HHHHHHHhHhccCCeEEEEEcCHHHH
Q 017983          295 VTQRCDI-ADVAVEMDRILRPGGYVLVQDTLEMI  327 (363)
Q Consensus       295 ~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~~  327 (363)
                           +. ..++..+ +.|+|||.++++-....+
T Consensus       365 -----g~~~~~~~~l-~~l~p~givyvsc~p~tl  392 (425)
T 2jjq_A          365 -----GLHPRLVKRL-NREKPGVIVYVSCNPETF  392 (425)
T ss_dssp             -----CSCHHHHHHH-HHHCCSEEEEEESCHHHH
T ss_pred             -----chHHHHHHHH-HhcCCCcEEEEECChHHH
Confidence                 22 2355555 569999999999776543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.24  E-value=8e-07  Score=82.32  Aligned_cols=65  Identities=12%  Similarity=0.189  Sum_probs=44.9

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC--CCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP--RTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp--~sFDlVh~~  289 (363)
                      ...+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++.    -+.+++..+. .++++  ..| .|+++
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~-~~~~~~~~~~-~vv~n  101 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDIL-QFKFPKNQSY-KIFGN  101 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGG-GCCCCSSCCC-EEEEE
T ss_pred             CCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhccCCCeEEEEChHH-hCCcccCCCe-EEEEe
Confidence            346999999999999999998763   47788988 8998887763    2334443333 36676  345 34443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.24  E-value=3.6e-07  Score=80.37  Aligned_cols=73  Identities=21%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             CCCCHHHHHHHHHcC---CCceeeecccCCCCCCCCCccEEEeCCcccccc--------------cCCCchhhhhccccc
Q 017983            6 KDEHEAQIQFALERG---IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWD--------------AQGGKPLLELNRILR   68 (363)
Q Consensus         6 ~D~~~~qvq~A~erg---~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~--------------~~~~~~l~E~~RVLr   68 (363)
                      -|.++.+++.|+++.   ..+.+.+.++..+||++++||+|+|..++.+..              .+...+|.++.|+||
T Consensus        71 ~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  150 (215)
T 2pxx_A           71 VDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLV  150 (215)
T ss_dssp             EESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEE
T ss_pred             EeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCc
Confidence            388999999999884   236667778888999999999999976664432              123579999999999


Q ss_pred             CCeEEEEEeC
Q 017983           69 PGGFFIWSAT   78 (363)
Q Consensus        69 PGG~~~~s~~   78 (363)
                      |||.+++..+
T Consensus       151 pgG~li~~~~  160 (215)
T 2pxx_A          151 PGGRFISMTS  160 (215)
T ss_dssp             EEEEEEEEES
T ss_pred             CCCEEEEEeC
Confidence            9999999987

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.23  E-value=1.2e-06  Score=86.09  Aligned_cols=115  Identities=14%  Similarity=0.045  Sum_probs=68.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCCCCcceeeecccccc-----
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSD-----  294 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp~sFDlVh~~~~l~~-----  294 (363)
                      ..+|||+|||+|.|+.+++++-....++.++|.+ .+++.|  .. +.+++..... .+..+.||+|+++=-+..     
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--~~-~~~~~~D~~~-~~~~~~fD~Ii~NPPy~~~~~~~  115 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--PW-AEGILADFLL-WEPGEAFDLILGNPPYGIVGEAS  115 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--TT-EEEEESCGGG-CCCSSCEEEEEECCCCCCBSCTT
T ss_pred             CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--CC-CcEEeCChhh-cCccCCCCEEEECcCccCccccc
Confidence            3599999999999999998631001146677766 565555  22 2223321211 222279999999511111     


Q ss_pred             -----cccc----------------CCHHHHHHHHhHhccCCeEEEEEcCHH-----HHHHHHHHHHhCCc
Q 017983          295 -----VTQR----------------CDIADVAVEMDRILRPGGYVLVQDTLE-----MINKLKPVLHSLQW  339 (363)
Q Consensus       295 -----~~~~----------------~~~~~~L~Em~RVLRPGG~lii~D~~~-----~~~~i~~l~~~l~W  339 (363)
                           +.+.                .....++..+.++|||||.+++.....     ....+++.+...++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          116 KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK  186 (421)
T ss_dssp             TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred             ccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence                 1000                011256899999999999988875433     33567776655555

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.22  E-value=9e-07  Score=77.00  Aligned_cols=72  Identities=22%  Similarity=0.313  Sum_probs=58.6

Q ss_pred             CCCCHHHHHHHHHc----CC-CceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GI-PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~-p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    ++ .+.+...+...+|+ +++||+|+|+.+++|+.. +...++.++.|+|||||++++..+
T Consensus        60 vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           60 WDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             EESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            37888899888765    55 46677778888999 899999999998888753 346799999999999999888643

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.21  E-value=9e-07  Score=82.30  Aligned_cols=70  Identities=11%  Similarity=0.097  Sum_probs=57.6

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.|++.|+++    |+  .+.+...+.+.+|   ++||+|+|..+++|+.. +...+|.++.|+|||||+++++.+
T Consensus        93 vd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A           93 LTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             EESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            37899999999987    43  3556666777666   89999999999999853 456899999999999999999866

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.20  E-value=2.4e-07  Score=85.00  Aligned_cols=69  Identities=20%  Similarity=0.136  Sum_probs=51.6

Q ss_pred             CCCHHHHHHHHHc----CCCceeeecccCC--CCCCCCCccEEEe-----CCcccccccCCCchhhhhcccccCCeEEEE
Q 017983            7 DEHEAQIQFALER----GIPAILSVIGTQK--LTFPDDAYDLIHC-----ARCRVHWDAQGGKPLLELNRILRPGGFFIW   75 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p~~~~~~~~~~--LPfpd~sFD~v~c-----s~~~~~~~~~~~~~l~E~~RVLrPGG~~~~   75 (363)
                      |+|+.+++.|+++    +..+.+...+++.  .++++++||.|++     .....|+. +...++.|+.|||||||.|++
T Consensus        90 d~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~-~~~~~~~e~~rvLkPGG~l~f  168 (236)
T 3orh_A           90 ECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             ECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEE
T ss_pred             eCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeecccchhhhc-chhhhhhhhhheeCCCCEEEE
Confidence            7899999999986    3334455555544  4799999999975     33344443 245799999999999999998


Q ss_pred             E
Q 017983           76 S   76 (363)
Q Consensus        76 s   76 (363)
                      .
T Consensus       169 ~  169 (236)
T 3orh_A          169 C  169 (236)
T ss_dssp             C
T ss_pred             E
Confidence            6

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.20  E-value=1.5e-06  Score=78.49  Aligned_cols=87  Identities=15%  Similarity=0.189  Sum_probs=65.2

Q ss_pred             CCCCHHHHHHHHHcCCCceeeeccc-CCCCCC-CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCCC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGT-QKLTFP-DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYRH   83 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~-~~LPfp-d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~~   83 (363)
                      -|.++.+++.|+++.-.+.+...+. +.+||+ +++||+|+|+       .+...+|.++.|+|||||.|+......  .
T Consensus        76 vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~--~  146 (226)
T 3m33_A           76 YDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------RGPTSVILRLPELAAPDAHFLYVGPRL--N  146 (226)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-------SCCSGGGGGHHHHEEEEEEEEEEESSS--C
T ss_pred             EECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-------CCHHHHHHHHHHHcCCCcEEEEeCCcC--C
Confidence            4889999999999965577778887 789999 9999999987       246689999999999999999443311  1


Q ss_pred             ChhhHHHHHHHHHHHhhcceEEEEE
Q 017983           84 DDRHRSVWNAMVNLTESMCWKAVAR  108 (363)
Q Consensus        84 ~~e~~~~~~~~~~l~~~~cw~~~~~  108 (363)
                      .       ..+..+.....++.+..
T Consensus       147 ~-------~~~~~~l~~~Gf~~~~~  164 (226)
T 3m33_A          147 V-------PEVPERLAAVGWDIVAE  164 (226)
T ss_dssp             C-------THHHHHHHHTTCEEEEE
T ss_pred             H-------HHHHHHHHHCCCeEEEE
Confidence            1       23455555666665543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.19  E-value=2.9e-06  Score=81.01  Aligned_cols=89  Identities=17%  Similarity=0.261  Sum_probs=58.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++    |+  +.+++.   ..+.++ .+||+|+++..+
T Consensus        43 ~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~---D~~~~~~~~~D~Vv~n~py  116 (299)
T 2h1r_A           43 SDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYEG---DAIKTVFPKFDVCTANIPY  116 (299)
T ss_dssp             TCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC-------CCSSCCCCCSEEEEECCG
T ss_pred             cCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEEC---chhhCCcccCCEEEEcCCc
Confidence            46999999999999999998754   47788888 788877764    22  333332   234455 799999997443


Q ss_pred             ccccccCCHHHHH---------------HHHhHhccCCeE
Q 017983          293 SDVTQRCDIADVA---------------VEMDRILRPGGY  317 (363)
Q Consensus       293 ~~~~~~~~~~~~L---------------~Em~RVLRPGG~  317 (363)
                      + +... .+..+|               .+..|+++|+|.
T Consensus       117 ~-~~~~-~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~  154 (299)
T 2h1r_A          117 K-ISSP-LIFKLISHRPLFKCAVLMFQKEFAERMLANVGD  154 (299)
T ss_dssp             G-GHHH-HHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred             c-cccH-HHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence            3 2211 122333               447789998884

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.18  E-value=6.6e-07  Score=82.96  Aligned_cols=73  Identities=21%  Similarity=0.203  Sum_probs=59.6

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCC-CCCCccEEEeCCccccc---ccCCCchhhhhcccccCCeEEEE
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTF-PDDAYDLIHCARCRVHW---DAQGGKPLLELNRILRPGGFFIW   75 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPf-pd~sFD~v~cs~~~~~~---~~~~~~~l~E~~RVLrPGG~~~~   75 (363)
                      -|.++.+++.|+++    |.  .+.+.+.++..+|| ++++||+|+|..+++|.   ..+...+|.++.|+|||||+|++
T Consensus        93 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  172 (298)
T 1ri5_A           93 VDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM  172 (298)
T ss_dssp             EESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            48899999999887    22  25667778888999 69999999999887551   22346799999999999999999


Q ss_pred             EeC
Q 017983           76 SAT   78 (363)
Q Consensus        76 s~~   78 (363)
                      +.+
T Consensus       173 ~~~  175 (298)
T 1ri5_A          173 TVP  175 (298)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            987

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.17  E-value=1.1e-06  Score=78.48  Aligned_cols=72  Identities=17%  Similarity=0.034  Sum_probs=58.6

Q ss_pred             CCCCHHHHHHHHHc----CC------CceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEE
Q 017983            6 KDEHEAQIQFALER----GI------PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFI   74 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~------p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~   74 (363)
                      -|.++.+++.|+++    |+      .+.+...++..+++++++||+|+|+.+++|+.+. ...+|.++.|+|||||.++
T Consensus        59 vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li  138 (217)
T 3jwh_A           59 VDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV  138 (217)
T ss_dssp             EESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred             EECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            48899999999887    22      3566677788888999999999999999888642 1579999999999999777


Q ss_pred             EEe
Q 017983           75 WSA   77 (363)
Q Consensus        75 ~s~   77 (363)
                      ++.
T Consensus       139 ~~~  141 (217)
T 3jwh_A          139 TTP  141 (217)
T ss_dssp             EEE
T ss_pred             Ecc
Confidence            663

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.16  E-value=4.1e-07  Score=84.46  Aligned_cols=54  Identities=15%  Similarity=0.093  Sum_probs=42.1

Q ss_pred             eeecccCC-CCCC---CCCccEEEeCCccccccc---CCCchhhhhcccccCCeEEEEEeC
Q 017983           25 LSVIGTQK-LTFP---DDAYDLIHCARCRVHWDA---QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        25 ~~~~~~~~-LPfp---d~sFD~v~cs~~~~~~~~---~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      +...+... .|++   +++||+|+|+.|++|...   +...+|.++.|+|||||+|+++..
T Consensus       138 ~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          138 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             EEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            44556544 4654   789999999999987532   235799999999999999999964

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.16  E-value=7.5e-07  Score=79.26  Aligned_cols=73  Identities=29%  Similarity=0.371  Sum_probs=59.6

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccc-cCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWD-AQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~-~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    +..+.+...+...+|+++++||+|+|+.++++++ .+...++.++.|+|||||++++..+
T Consensus        66 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A           66 VDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            37889999999876    3456777888888999999999999987743333 2346799999999999999999876

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.15  E-value=7.7e-06  Score=82.07  Aligned_cols=122  Identities=14%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             CCCceEEEecccccHHHHHhhcCC------------CeEEEEeecCCc-chHHHHHh----cCc----eeeeccccccCC
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQP------------LWVMNVVPIDAP-DTLSIIFD----RGL----IGMYHDWCESFN  277 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~------------v~v~~v~~~d~s-~~L~~a~~----Rgl----~~~~~d~~e~~l  277 (363)
                      ....+|||.|||+|+|...+.+.-            ....++.++|.. .++.+|..    +|+    ..+.+.   ..+
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~g---D~l  246 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCE---DSL  246 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEEC---CTT
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeC---CCC
Confidence            334689999999999988776420            001135677776 67766654    343    122222   223


Q ss_pred             CCC--CCcceeeeccccccccccCC--------------HHHHHHHHhHhccCCeEEEEEcCHHHH------HHHHH-HH
Q 017983          278 TYP--RTYDLLHSSFLLSDVTQRCD--------------IADVAVEMDRILRPGGYVLVQDTLEMI------NKLKP-VL  334 (363)
Q Consensus       278 pfp--~sFDlVh~~~~l~~~~~~~~--------------~~~~L~Em~RVLRPGG~lii~D~~~~~------~~i~~-l~  334 (363)
                      ..+  ..||+|+++--|.+......              -..++.++.++|||||++++.-....+      ..+++ |.
T Consensus       247 ~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~  326 (445)
T 2okc_A          247 EKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLL  326 (445)
T ss_dssp             TSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHH
T ss_pred             CCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHH
Confidence            333  68999999866654322110              136899999999999999876544322      34554 55


Q ss_pred             HhCCceeee
Q 017983          335 HSLQWSTNI  343 (363)
Q Consensus       335 ~~l~W~~~~  343 (363)
                      +...+...+
T Consensus       327 ~~~~l~~ii  335 (445)
T 2okc_A          327 QDFNLHTIL  335 (445)
T ss_dssp             HHEEEEEEE
T ss_pred             hcCcEEEEE
Confidence            555555443

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.14  E-value=8e-07  Score=83.54  Aligned_cols=72  Identities=13%  Similarity=0.102  Sum_probs=59.6

Q ss_pred             CCCCHHHHHHHHHcC--------CCceeeecccCCCCCCCCCccEEEeCCcccccccC--CCchhhhhcccccCCeEEEE
Q 017983            6 KDEHEAQIQFALERG--------IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ--GGKPLLELNRILRPGGFFIW   75 (363)
Q Consensus         6 ~D~~~~qvq~A~erg--------~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~--~~~~l~E~~RVLrPGG~~~~   75 (363)
                      -|+++.+++.|+++-        ..+.+.+.+...+|+ +++||+|+|+...+|+.+.  ...+|.++.|+|||||+|++
T Consensus       110 vD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  188 (299)
T 3g2m_A          110 LELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL  188 (299)
T ss_dssp             EESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            488999999999872        346788888999999 6999999998766666542  35799999999999999999


Q ss_pred             EeC
Q 017983           76 SAT   78 (363)
Q Consensus        76 s~~   78 (363)
                      +.+
T Consensus       189 ~~~  191 (299)
T 3g2m_A          189 SLA  191 (299)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            976

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.13  E-value=1.3e-06  Score=86.63  Aligned_cols=44  Identities=30%  Similarity=0.478  Sum_probs=36.2

Q ss_pred             CCC-CCcceeeeccccccccccC-----------------------------------CHHHHHHHHhHhccCCeEEEEE
Q 017983          278 TYP-RTYDLLHSSFLLSDVTQRC-----------------------------------DIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       278 pfp-~sFDlVh~~~~l~~~~~~~-----------------------------------~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      .|| +|||+||++.+||-+.+..                                   ++..+|+...|.|||||.++++
T Consensus       145 lfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~  224 (374)
T 3b5i_A          145 LFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV  224 (374)
T ss_dssp             CSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            488 9999999999999665221                                   3455789999999999999997

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.10  E-value=1.4e-06  Score=78.22  Aligned_cols=72  Identities=19%  Similarity=0.229  Sum_probs=58.8

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCC-cccccc--cCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCAR-CRVHWD--AQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~-~~~~~~--~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    +..+.+...+...+|++ ++||+|+|.. +++|+.  .+...+|.++.|+|||||+++++.+
T Consensus        60 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  138 (243)
T 3d2l_A           60 VDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH  138 (243)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence            37899999999876    44567778888889988 8999999986 666653  2245789999999999999999876

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.09  E-value=2.1e-06  Score=81.23  Aligned_cols=71  Identities=10%  Similarity=0.020  Sum_probs=58.2

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccc-cCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWD-AQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~-~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|+++.+++.|+++    |+.  +.+...+...+|   ++||+|+|..+++|+. .+...+|.++.|+|||||+++++.+
T Consensus       119 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          119 LTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             EESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            38899999999987    443  566666777775   8999999999998885 3456899999999999999999876


Q ss_pred             C
Q 017983           79 P   79 (363)
Q Consensus        79 ~   79 (363)
                      .
T Consensus       196 ~  196 (318)
T 2fk8_A          196 V  196 (318)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.08  E-value=3.8e-06  Score=79.03  Aligned_cols=70  Identities=13%  Similarity=0.134  Sum_probs=57.0

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCC--------CchhhhhcccccCCe
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG--------GKPLLELNRILRPGG   71 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~--------~~~l~E~~RVLrPGG   71 (363)
                      -|+|+.|++.|+++    |++  +.+...+...+   +++||+|+|..+++|+++..        ..++.++.|+|||||
T Consensus       101 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG  177 (302)
T 3hem_A          101 LTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDG  177 (302)
T ss_dssp             EECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTC
T ss_pred             EECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCc
Confidence            48899999999887    554  55666666665   79999999999998886421        479999999999999


Q ss_pred             EEEEEeC
Q 017983           72 FFIWSAT   78 (363)
Q Consensus        72 ~~~~s~~   78 (363)
                      +|++...
T Consensus       178 ~l~i~~~  184 (302)
T 3hem_A          178 RMLLHTI  184 (302)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999865

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.07  E-value=6.9e-06  Score=79.95  Aligned_cols=117  Identities=9%  Similarity=-0.015  Sum_probs=78.0

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCC--CCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEe
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKL--TFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~L--Pfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      |. +.+++.|+++    |+.  +.+...+....  |+| ++||+|+++.++++|++.. ..+|.++.|+|||||++++..
T Consensus       210 D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          210 DL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             EC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             eC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            66 7888888876    432  55566666554  788 8999999999999998642 468999999999999999986


Q ss_pred             CCCCCCChhhH-------H--------------HHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCC
Q 017983           78 TPVYRHDDRHR-------S--------------VWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVS  125 (363)
Q Consensus        78 ~~~~~~~~e~~-------~--------------~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~  125 (363)
                      +..........       .              ....+..+.+.-.++.+........++..|=+++..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~~~  356 (363)
T 3dp7_A          288 TLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRLKE  356 (363)
T ss_dssp             CCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEEC-
T ss_pred             eccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEeecc
Confidence            53322111100       0              134567777777888777654333335555555543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.06  E-value=2.6e-05  Score=69.82  Aligned_cols=113  Identities=15%  Similarity=0.076  Sum_probs=73.3

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCC-CCCCCCCccEEEeCCcccccccC------------------CCchhhh
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQ------------------GGKPLLE   62 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~------------------~~~~l~E   62 (363)
                      -|.++.+++.|+++    |+.+.+...++.. .++++++||+|+|....++..+.                  ...++.+
T Consensus        85 vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  164 (230)
T 3evz_A           85 TEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEE  164 (230)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHH
Confidence            47889999998865    6666777777643 47888999999997544332210                  0358999


Q ss_pred             hcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecC--CCceeEEEEecCCC
Q 017983           63 LNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVD--SNRIGFVIYQKPVS  125 (363)
Q Consensus        63 ~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~--~~~~~~~i~~k~~~  125 (363)
                      +.|+|||||+|++..+...       .....+..+.+...|+.....-.  ..-..+.+|+|...
T Consensus       165 ~~~~LkpgG~l~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~~~~  222 (230)
T 3evz_A          165 AFDHLNPGGKVALYLPDKE-------KLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKGIS  222 (230)
T ss_dssp             HGGGEEEEEEEEEEEESCH-------HHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEECCC-
T ss_pred             HHHHhCCCeEEEEEecccH-------hHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEecccc
Confidence            9999999999999866211       22345666666777765443221  22246777777654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.06  E-value=2.8e-06  Score=80.94  Aligned_cols=98  Identities=19%  Similarity=0.203  Sum_probs=57.6

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-ch----HHHHHhcC--ceeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DT----LSIIFDRG--LIGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~----L~~a~~Rg--l~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|+|....++. ++.  .+.+.+.. ++    +.. ...|  ++. +...+ ....++ +.||+|+|..+
T Consensus        75 ~~~VLDLGaAPGGWSQvAa~~~~~~--~v~g~dVGvDl~~~pi~~-~~~g~~ii~-~~~~~-dv~~l~~~~~DlVlsD~a  149 (277)
T 3evf_A           75 EGRVIDLGCGRGGWCYYAAAQKEVS--GVKGFTLGRDGHEKPMNV-QSLGWNIIT-FKDKT-DIHRLEPVKCDTLLCDIG  149 (277)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEE--EEEEECCCCTTCCCCCCC-CBTTGGGEE-EECSC-CTTTSCCCCCSEEEECCC
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCC--cceeEEEeccCccccccc-CcCCCCeEE-Eeccc-eehhcCCCCccEEEecCc
Confidence            358999999999999877654 332  23333333 11    100 0011  122 22212 235677 89999999865


Q ss_pred             cc---cccccCCHHHHHHHHhHhccCC-eEEEEEcC
Q 017983          292 LS---DVTQRCDIADVAVEMDRILRPG-GYVLVQDT  323 (363)
Q Consensus       292 l~---~~~~~~~~~~~L~Em~RVLRPG-G~lii~D~  323 (363)
                      .+   ++.+......+|..+.++|||| |.|++--.
T Consensus       150 pnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf  185 (277)
T 3evf_A          150 ESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL  185 (277)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred             cCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence            55   1111111124578889999999 99999643

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.05  E-value=2.2e-06  Score=78.07  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHcC--CC--------------------------------c-eeeecccCCC-CCCC---CCccEEEeC
Q 017983            6 KDEHEAQIQFALERG--IP--------------------------------A-ILSVIGTQKL-TFPD---DAYDLIHCA   46 (363)
Q Consensus         6 ~D~~~~qvq~A~erg--~p--------------------------------~-~~~~~~~~~L-Pfpd---~sFD~v~cs   46 (363)
                      -|.++.+++.|+++-  -+                                + .+...+...+ |+++   ++||+|+|+
T Consensus        85 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~  164 (265)
T 2i62_A           85 SDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLST  164 (265)
T ss_dssp             EESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE
T ss_pred             ecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEh
Confidence            388999999998762  11                                3 5666776665 5577   999999999


Q ss_pred             Cccccccc---CCCchhhhhcccccCCeEEEEEeCCCCCCC-------hhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           47 RCRVHWDA---QGGKPLLELNRILRPGGFFIWSATPVYRHD-------DRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        47 ~~~~~~~~---~~~~~l~E~~RVLrPGG~~~~s~~~~~~~~-------~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      .++++.+.   +...+|.++.|+|||||+|+++........       ....-....+..+.....++.+...
T Consensus       165 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  237 (265)
T 2i62_A          165 LCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE  237 (265)
T ss_dssp             SCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             hhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEE
Confidence            98874332   245799999999999999999864211000       0000012356666667777666543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.03  E-value=1.3e-06  Score=82.68  Aligned_cols=73  Identities=19%  Similarity=0.240  Sum_probs=57.1

Q ss_pred             CCCCHHHHHHHHHcC------------CCceeeecccCCCC----CC--CCCccEEEeCCcccccccC---CCchhhhhc
Q 017983            6 KDEHEAQIQFALERG------------IPAILSVIGTQKLT----FP--DDAYDLIHCARCRVHWDAQ---GGKPLLELN   64 (363)
Q Consensus         6 ~D~~~~qvq~A~erg------------~p~~~~~~~~~~LP----fp--d~sFD~v~cs~~~~~~~~~---~~~~l~E~~   64 (363)
                      -|+++.+++.|+++-            ..+.+.+.+.+.+|    |+  +++||+|+|+.++++...+   ...+|.++.
T Consensus        63 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~  142 (313)
T 3bgv_A           63 TDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNAC  142 (313)
T ss_dssp             EESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHH
Confidence            488999999998862            13566777888876    75  4599999999877443122   357999999


Q ss_pred             ccccCCeEEEEEeC
Q 017983           65 RILRPGGFFIWSAT   78 (363)
Q Consensus        65 RVLrPGG~~~~s~~   78 (363)
                      |+|||||+|+++.+
T Consensus       143 ~~LkpgG~li~~~~  156 (313)
T 3bgv_A          143 ERLSPGGYFIGTTP  156 (313)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             HHhCCCcEEEEecC
Confidence            99999999999987

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.02  E-value=4.6e-06  Score=77.59  Aligned_cols=71  Identities=15%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.++.+++.|+++    |+.+.+...+...+++ +++||+|+|+.+++|.... ...++.++.|+|||||++++..
T Consensus       148 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          148 WDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            47899999988876    6677888888888888 8999999999988877532 2479999999999999988863

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.99  E-value=1.5e-05  Score=70.37  Aligned_cols=91  Identities=18%  Similarity=0.124  Sum_probs=66.3

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      -|.++.+++.|+++    |++ +.+...+.  +++++++||+|+|+...++.    ..++.++.|+|||||+++++....
T Consensus        89 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~fD~i~~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~  162 (205)
T 3grz_A           89 TDISDESMTAAEENAALNGIYDIALQKTSL--LADVDGKFDLIVANILAEIL----LDLIPQLDSHLNEDGQVIFSGIDY  162 (205)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCCEEEESST--TTTCCSCEEEEEEESCHHHH----HHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEeccc--cccCCCCceEEEECCcHHHH----HHHHHHHHHhcCCCCEEEEEecCc
Confidence            47899999999886    655 45555554  45667999999998766442    368999999999999999985521


Q ss_pred             CCCChhhHHHHHHHHHHHhhcceEEEEEec
Q 017983           81 YRHDDRHRSVWNAMVNLTESMCWKAVARSV  110 (363)
Q Consensus        81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~  110 (363)
                      .        ....+..+.....++.+....
T Consensus       163 ~--------~~~~~~~~~~~~Gf~~~~~~~  184 (205)
T 3grz_A          163 L--------QLPKIEQALAENSFQIDLKMR  184 (205)
T ss_dssp             G--------GHHHHHHHHHHTTEEEEEEEE
T ss_pred             c--------cHHHHHHHHHHcCCceEEeec
Confidence            1        134566777778888776543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.98  E-value=4.9e-05  Score=64.80  Aligned_cols=68  Identities=18%  Similarity=0.128  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeeccc-CCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGT-QKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~-~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |++ ..+...++ +.+|..+++||+|+|+.+..+     ..++.++.|+|||||+++++..
T Consensus        55 vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           55 FEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             ECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred             EeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence            48899999999876    665 33444444 445555589999999877755     4799999999999999999876

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.97  E-value=9.7e-06  Score=80.00  Aligned_cols=99  Identities=22%  Similarity=0.272  Sum_probs=64.5

Q ss_pred             CceEEEecccccHHHHHhhcC---------------CCeEEEEeecCCc-chHHHHHhc--------Cc---eeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ---------------PLWVMNVVPIDAP-DTLSIIFDR--------GL---IGMYHDWC  273 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~---------------~v~v~~v~~~d~s-~~L~~a~~R--------gl---~~~~~d~~  273 (363)
                      .-+|+|+||++|..+..+...               ....+.|.-.|.+ |+....+..        +.   .++-..+-
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            457999999999755444332               2235567777877 666655544        11   11111110


Q ss_pred             ccCCCCC-CCcceeeeccccccccccC------------------------------CHHHHHHHHhHhccCCeEEEEE
Q 017983          274 ESFNTYP-RTYDLLHSSFLLSDVTQRC------------------------------DIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       274 e~~lpfp-~sFDlVh~~~~l~~~~~~~------------------------------~~~~~L~Em~RVLRPGG~lii~  321 (363)
                        .-.|| +|||+||++.+||-+.+..                              ++..+|.-..|.|+|||.+++.
T Consensus       132 --~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          132 --GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             --SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             --hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence              14588 9999999999988543211                              1234588889999999999997

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.96  E-value=1.8e-05  Score=71.19  Aligned_cols=94  Identities=12%  Similarity=0.121  Sum_probs=64.8

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCC--CCCCCccEEEeCCcccccccC--------CCchhhhhcccccCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT--FPDDAYDLIHCARCRVHWDAQ--------GGKPLLELNRILRPG   70 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~~~~--------~~~~l~E~~RVLrPG   70 (363)
                      -|+|+.+++.|.++    |++ +.+...++..++  |++++||.|++.... +|...        ...+|.++.|+||||
T Consensus        68 iD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~-p~~~~~~~~~rl~~~~~l~~~~~~Lkpg  146 (213)
T 2fca_A           68 IELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD-PWPKKRHEKRRLTYSHFLKKYEEVMGKG  146 (213)
T ss_dssp             ECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC-CCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             EEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCC-CCcCccccccccCcHHHHHHHHHHcCCC
Confidence            48899999998875    665 566677787787  899999999875432 44321        135899999999999


Q ss_pred             eEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEE
Q 017983           71 GFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVAR  108 (363)
Q Consensus        71 G~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~  108 (363)
                      |.|++++..     .   .....+..+.....|.....
T Consensus       147 G~l~~~td~-----~---~~~~~~~~~~~~~g~~~~~~  176 (213)
T 2fca_A          147 GSIHFKTDN-----R---GLFEYSLKSFSEYGLLLTYV  176 (213)
T ss_dssp             CEEEEEESC-----H---HHHHHHHHHHHHHTCEEEEE
T ss_pred             CEEEEEeCC-----H---HHHHHHHHHHHHCCCccccc
Confidence            999998751     1   12233444444446665543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.96  E-value=4.5e-06  Score=72.39  Aligned_cols=74  Identities=15%  Similarity=0.079  Sum_probs=51.4

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCC-CCCCCccEEEeCCccccc--------ccCCCchhhhhcccccCCe
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT-FPDDAYDLIHCARCRVHW--------DAQGGKPLLELNRILRPGG   71 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP-fpd~sFD~v~cs~~~~~~--------~~~~~~~l~E~~RVLrPGG   71 (363)
                      -|.++.+++.|+++    |++ +.+...+.+.++ +++++||+|+++...++.        ..+...+|.++.|+|||||
T Consensus        50 vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  129 (185)
T 3mti_A           50 FDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGG  129 (185)
T ss_dssp             EESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCc
Confidence            38899999999876    544 445555566654 678999999987544332        1112357899999999999


Q ss_pred             EEEEEeCC
Q 017983           72 FFIWSATP   79 (363)
Q Consensus        72 ~~~~s~~~   79 (363)
                      +|++...+
T Consensus       130 ~l~i~~~~  137 (185)
T 3mti_A          130 RLAIMIYY  137 (185)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEEEeC
Confidence            99998653

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.95  E-value=1.6e-05  Score=78.90  Aligned_cols=135  Identities=11%  Similarity=0.095  Sum_probs=82.4

Q ss_pred             CCceEEEecccccHHHHHhhcC--CC-----------------------------------eEEEEeecCCc-chHHHHH
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ--PL-----------------------------------WVMNVVPIDAP-DTLSIIF  261 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~--~v-----------------------------------~v~~v~~~d~s-~~L~~a~  261 (363)
                      ....|||.+||+|+|+.+.+..  +.                                   .-..+.++|.+ .|++.|.
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar  273 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR  273 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence            3468999999999997665532  10                                   00237788888 7887776


Q ss_pred             hc----Cc---eeeeccccccCCCCCCCcceeeec--cccccccccCCHHHHHHHHhHhccC--CeEEEEEcCHHHHHHH
Q 017983          262 DR----GL---IGMYHDWCESFNTYPRTYDLLHSS--FLLSDVTQRCDIADVAVEMDRILRP--GGYVLVQDTLEMINKL  330 (363)
Q Consensus       262 ~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~--~~l~~~~~~~~~~~~L~Em~RVLRP--GG~lii~D~~~~~~~i  330 (363)
                      +.    |+   +.+...... .++.+.+||+|+++  +... +.+...+..+..+|.++||+  ||.++|......+.  
T Consensus       274 ~Na~~~gl~~~I~~~~~D~~-~l~~~~~fD~Iv~NPPYG~r-l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l~--  349 (384)
T 3ldg_A          274 KNAREVGLEDVVKLKQMRLQ-DFKTNKINGVLISNPPYGER-LLDDKAVDILYNEMGETFAPLKTWSQFILTNDTDFE--  349 (384)
T ss_dssp             HHHHHTTCTTTEEEEECCGG-GCCCCCCSCEEEECCCCTTT-TSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCTTHH--
T ss_pred             HHHHHcCCCCceEEEECChH-HCCccCCcCEEEECCchhhc-cCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCHHHH--
Confidence            54    43   333333233 25556899999997  3322 22223467788888899987  88877766544222  


Q ss_pred             HHHHHhCCceeeeecceEEEEEeccCCC
Q 017983          331 KPVLHSLQWSTNIYHDQFLVGKKGFWRP  358 (363)
Q Consensus       331 ~~l~~~l~W~~~~~~~~~li~~K~~w~~  358 (363)
                      +.+..+-..+..+..+.+-+--.+||-+
T Consensus       350 ~~~g~~~~~~~~l~nG~l~~~~~~~~~~  377 (384)
T 3ldg_A          350 QKFGRKADKKRKLYNGSLKVDLYQFYGQ  377 (384)
T ss_dssp             HHHTSCCSEEEEEEETTEEEEEEEECCC
T ss_pred             HHhCCCccceeEEecCCEEEEEEEEECC
Confidence            2222223334445567776666677754

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=97.94  E-value=1.8e-05  Score=75.13  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=57.1

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeCC
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      |.+ .+++.|+++    |++  +.+...+...+|++++ ||+|+|+.+++||.+. ...+|.++.|+|||||++++..+.
T Consensus       196 D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          196 DWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             ECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence            677 888888776    544  5666677777788866 9999999999999642 257999999999999999998653

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.93  E-value=7.5e-06  Score=77.71  Aligned_cols=73  Identities=15%  Similarity=0.254  Sum_probs=56.8

Q ss_pred             CCCCHHHHHHHHHcC--------C----------------------------CceeeecccCCCCCC-CCCccEEEeCCc
Q 017983            6 KDEHEAQIQFALERG--------I----------------------------PAILSVIGTQKLTFP-DDAYDLIHCARC   48 (363)
Q Consensus         6 ~D~~~~qvq~A~erg--------~----------------------------p~~~~~~~~~~LPfp-d~sFD~v~cs~~   48 (363)
                      -|+|+.+++.|++.-        +                            .+.+...+....||+ ++.||+|+|.-+
T Consensus       143 tDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnv  222 (274)
T 1af7_A          143 SDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNV  222 (274)
T ss_dssp             EESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSS
T ss_pred             EECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCc
Confidence            489999999998741        1                            244555666667787 789999999988


Q ss_pred             ccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983           49 RVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        49 ~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      ++++.+. ..+++.++.++|||||+|++...
T Consensus       223 liyf~~~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          223 MIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             GGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             hHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            8887542 25899999999999999999644

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.93  E-value=5.4e-06  Score=75.24  Aligned_cols=72  Identities=18%  Similarity=0.274  Sum_probs=57.6

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccccc--CCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA--QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~--~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.+++.|+++    |..+.+.+.++..+|++ ++||+|+|..+.+++..  +...+|.++.|+|||||.|++..+
T Consensus        69 vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A           69 LDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            48899999999875    55677788888888887 78999999765544432  245799999999999999999866

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.93  E-value=1.1e-05  Score=69.26  Aligned_cols=72  Identities=14%  Similarity=0.043  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHHHc----CCC---ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP---AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p---~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |++   +.+...+... ++++++||+|+|+...++-..+...++.++.|+|||||.++++.+
T Consensus        80 ~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A           80 ADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            37889999998877    555   5666666655 566889999999876543222345799999999999999999977

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.92  E-value=2.4e-05  Score=74.33  Aligned_cols=40  Identities=15%  Similarity=0.017  Sum_probs=32.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR  263 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R  263 (363)
                      ...|||.+||+|+++.+++..+.   .++++|.+ .++++|.+|
T Consensus       236 ~~~vlD~f~GsGt~~~~a~~~g~---~~~g~e~~~~~~~~a~~r  276 (297)
T 2zig_A          236 GDVVLDPFAGTGTTLIAAARWGR---RALGVELVPRYAQLAKER  276 (297)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHH
Confidence            45899999999999998888764   35677887 788888877

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.90  E-value=3.9e-05  Score=68.37  Aligned_cols=97  Identities=20%  Similarity=0.247  Sum_probs=68.4

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCC--CCCCCccEEEeCCcccccccC--------CCchhhhhcccccCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT--FPDDAYDLIHCARCRVHWDAQ--------GGKPLLELNRILRPG   70 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~~~~--------~~~~l~E~~RVLrPG   70 (363)
                      -|.++.+++.|+++    |++ +.+...++..+|  |++++||+|++... .+|...        ...++.++.|+||||
T Consensus        71 vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  149 (214)
T 1yzh_A           71 IDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS-DPWPKKRHEKRRLTYKTFLDTFKRILPEN  149 (214)
T ss_dssp             EESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-CCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred             EEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC-CCccccchhhhccCCHHHHHHHHHHcCCC
Confidence            37899999988875    554 566677787888  99999999998754 244321        135999999999999


Q ss_pred             eEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecC
Q 017983           71 GFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVD  111 (363)
Q Consensus        71 G~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~  111 (363)
                      |.|+++...     .   .....+.++.....|+.+....+
T Consensus       150 G~l~~~~~~-----~---~~~~~~~~~~~~~g~~~~~~~~d  182 (214)
T 1yzh_A          150 GEIHFKTDN-----R---GLFEYSLVSFSQYGMKLNGVWLD  182 (214)
T ss_dssp             CEEEEEESC-----H---HHHHHHHHHHHHHTCEEEEEESS
T ss_pred             cEEEEEeCC-----H---HHHHHHHHHHHHCCCeeeecccc
Confidence            999998752     1   12345555556667776655433

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.90  E-value=1.1e-05  Score=70.61  Aligned_cols=73  Identities=14%  Similarity=0.098  Sum_probs=56.1

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCC-CCCCCccEEEeCCccccccc--------CCCchhhhhcccccCC
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLT-FPDDAYDLIHCARCRVHWDA--------QGGKPLLELNRILRPG   70 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LP-fpd~sFD~v~cs~~~~~~~~--------~~~~~l~E~~RVLrPG   70 (363)
                      -|.++.+++.|+++    |+  .+.+...++..++ +.+++||+|+|.....+..+        +...++.++.|+||||
T Consensus        53 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g  132 (197)
T 3eey_A           53 FDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG  132 (197)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC
Confidence            48899999999877    44  4667777777776 78899999998765533211        1125899999999999


Q ss_pred             eEEEEEeC
Q 017983           71 GFFIWSAT   78 (363)
Q Consensus        71 G~~~~s~~   78 (363)
                      |++++...
T Consensus       133 G~l~~~~~  140 (197)
T 3eey_A          133 GIITVVIY  140 (197)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEEc
Confidence            99999865

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.89  E-value=3.4e-05  Score=74.34  Aligned_cols=101  Identities=10%  Similarity=0.099  Sum_probs=68.9

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC-
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV-   80 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~-   80 (363)
                      |.++.+++.|+++    |+. +.+...++..+|  +++||+|+++..    ..+...++.|+.|+|||||+|++..... 
T Consensus       153 Dis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~----~~d~~~~l~el~r~LkPGG~Lvv~~~~~~  226 (298)
T 3fpf_A          153 EIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL----AEPKRRVFRNIHRYVDTETRIIYRTYTGM  226 (298)
T ss_dssp             ESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT----CSCHHHHHHHHHHHCCTTCEEEEEECCGG
T ss_pred             ECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC----ccCHHHHHHHHHHHcCCCcEEEEEcCcch
Confidence            8899999999987    663 455566676665  899999997533    2244579999999999999999986432 


Q ss_pred             ----CC-CChhhHHHHHHHHHHHhhcceEEEEEecCCC--ceeEEEEecCCC
Q 017983           81 ----YR-HDDRHRSVWNAMVNLTESMCWKAVARSVDSN--RIGFVIYQKPVS  125 (363)
Q Consensus        81 ----~~-~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~--~~~~~i~~k~~~  125 (363)
                          |. ..++            ..-.|+.....+..+  ..-+++.+|...
T Consensus       227 r~~l~~~v~~~------------~~~gf~~~~~~~p~~~v~N~vv~a~k~~~  266 (298)
T 3fpf_A          227 RAILYAPVSDD------------DITGFRRAGVVLPSGKVNNTSVLVFKCPD  266 (298)
T ss_dssp             GGGSSCCCCTG------------GGTTEEEEEEECCCTTCCCEEEEEEECC-
T ss_pred             hhhccccCChh------------hhhhhhheeEECCCCCcCcEEEEEEccCC
Confidence                11 1121            122787777665433  344777777654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.87  E-value=8.3e-06  Score=81.13  Aligned_cols=104  Identities=14%  Similarity=0.077  Sum_probs=66.4

Q ss_pred             CCceEEEecccccHHHHHhhcCCCe-------------------------------------EEEEeecCCc-chHHHHH
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLW-------------------------------------VMNVVPIDAP-DTLSIIF  261 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~-------------------------------------v~~v~~~d~s-~~L~~a~  261 (363)
                      ....|||.+||+|+|+...+.....                                     -..|+++|.+ .|++.|.
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar  280 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK  280 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence            3468999999999997665532100                                     0237788988 7888776


Q ss_pred             hc----Cc---eeeeccccccCCCCCCCcceeeec--cccccccccCCHHHHHHHHhHhccC--CeEEEEEcCHH
Q 017983          262 DR----GL---IGMYHDWCESFNTYPRTYDLLHSS--FLLSDVTQRCDIADVAVEMDRILRP--GGYVLVQDTLE  325 (363)
Q Consensus       262 ~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~--~~l~~~~~~~~~~~~L~Em~RVLRP--GG~lii~D~~~  325 (363)
                      +.    |+   +.+.+..+. .++.+.+||+|+++  +... +.+...+..+..+|.++||+  ||.++|.....
T Consensus       281 ~Na~~~gl~~~I~~~~~D~~-~~~~~~~fD~Iv~NPPYg~r-l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  353 (393)
T 3k0b_A          281 QNAVEAGLGDLITFRQLQVA-DFQTEDEYGVVVANPPYGER-LEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE  353 (393)
T ss_dssp             HHHHHTTCTTCSEEEECCGG-GCCCCCCSCEEEECCCCCCS-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred             HHHHHcCCCCceEEEECChH-hCCCCCCCCEEEECCCCccc-cCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            54    33   333332233 25556899999998  3322 22223456677888888887  88877765544

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.85  E-value=1.8e-05  Score=78.35  Aligned_cols=133  Identities=8%  Similarity=0.066  Sum_probs=80.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCC-------------------------------------eEEEEeecCCc-chHHHHH
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPL-------------------------------------WVMNVVPIDAP-DTLSIIF  261 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v-------------------------------------~v~~v~~~d~s-~~L~~a~  261 (363)
                      ....|||.+||+|+|+..++....                                     .-..|.++|.+ .|++.|.
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar  274 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR  274 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence            346999999999999877654210                                     00247888988 8888776


Q ss_pred             hc----Cc---eeeeccccccCCCCCCCcceeeeccccc-cccccCCHHHHHHHHhHhccC--CeEEEEEcCHHHHHHHH
Q 017983          262 DR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLLS-DVTQRCDIADVAVEMDRILRP--GGYVLVQDTLEMINKLK  331 (363)
Q Consensus       262 ~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~~~l~-~~~~~~~~~~~L~Em~RVLRP--GG~lii~D~~~~~~~i~  331 (363)
                      +.    |+   +.+.+..+.. ++.+.+||+|+++-=+. .+.+...+..+..++.++||+  ||.+++......+.+  
T Consensus       275 ~Na~~~gl~~~i~~~~~D~~~-l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l~~--  351 (385)
T 3ldu_A          275 ENAEIAGVDEYIEFNVGDATQ-FKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYEDFEY--  351 (385)
T ss_dssp             HHHHHHTCGGGEEEEECCGGG-CCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCTTHHH--
T ss_pred             HHHHHcCCCCceEEEECChhh-cCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCHHHHH--
Confidence            65    43   3333333332 45568999999963332 222233466788889999988  888777665443222  


Q ss_pred             HHHHhCCcee--eeecceEEEEEeccCC
Q 017983          332 PVLHSLQWST--NIYHDQFLVGKKGFWR  357 (363)
Q Consensus       332 ~l~~~l~W~~--~~~~~~~li~~K~~w~  357 (363)
                      .  -+++...  .+..+.+-+--.+|+-
T Consensus       352 ~--~g~~~~~~~~l~nG~l~~~~~~~~~  377 (385)
T 3ldu_A          352 E--FGQKADKKRKLYNGMLKTNFFQYPG  377 (385)
T ss_dssp             H--HTSCCSEEEEEEETTEEEEEEEECC
T ss_pred             h--hCCCcccceEEecCCEEEEEEEEEC
Confidence            1  2344432  3335555555555664

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.80  E-value=1.6e-05  Score=72.34  Aligned_cols=71  Identities=15%  Similarity=0.241  Sum_probs=54.3

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCC-CC--CCCCCccEEEeCCcccccccCCC--------chhhhhcccccCC
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQK-LT--FPDDAYDLIHCARCRVHWDAQGG--------KPLLELNRILRPG   70 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~-LP--fpd~sFD~v~cs~~~~~~~~~~~--------~~l~E~~RVLrPG   70 (363)
                      |+|+.+++.|+++    |++ +.+...++.. ||  |++++||+|++... .+|+....        .++.++.|+||||
T Consensus        65 D~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpG  143 (218)
T 3dxy_A           65 EVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP-DPWHKARHNKRRIVQVPFAELVKSKLQLG  143 (218)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC-CCCCSGGGGGGSSCSHHHHHHHHHHEEEE
T ss_pred             EecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC-CCccchhhhhhhhhhHHHHHHHHHHcCCC
Confidence            8999999888765    654 5666666666 45  89999999998643 35543221        3899999999999


Q ss_pred             eEEEEEeC
Q 017983           71 GFFIWSAT   78 (363)
Q Consensus        71 G~~~~s~~   78 (363)
                      |+|++++.
T Consensus       144 G~l~i~td  151 (218)
T 3dxy_A          144 GVFHMATD  151 (218)
T ss_dssp             EEEEEEES
T ss_pred             cEEEEEeC
Confidence            99999876

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=97.80  E-value=9e-06  Score=76.70  Aligned_cols=45  Identities=20%  Similarity=0.364  Sum_probs=36.8

Q ss_pred             CCCCCCccEEEeCCcccccc----c-CCCchhhhhcccccCCeEEEEEeC
Q 017983           34 TFPDDAYDLIHCARCRVHWD----A-QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        34 Pfpd~sFD~v~cs~~~~~~~----~-~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      ++++++||+|+|..+++|++    + +...+|.++.|+|||||+|++...
T Consensus       172 ~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          172 EAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             TTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            47899999999988875543    1 245799999999999999999855

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=97.79  E-value=1.2e-05  Score=75.70  Aligned_cols=73  Identities=7%  Similarity=-0.034  Sum_probs=55.7

Q ss_pred             CCCCHHHHHHHHHcC---CCceeeecccCCC-----------CCCCCCccEEEeCCcccccccC-CCchhhhhcccccCC
Q 017983            6 KDEHEAQIQFALERG---IPAILSVIGTQKL-----------TFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPG   70 (363)
Q Consensus         6 ~D~~~~qvq~A~erg---~p~~~~~~~~~~L-----------Pfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPG   70 (363)
                      -|.|+.+++.|+++-   -.+.+...+...+           .|+.++||+|+++.+++|++++ ...+|.|+.|+||||
T Consensus       110 vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG  189 (274)
T 2qe6_A          110 VDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG  189 (274)
T ss_dssp             EESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT
T ss_pred             EECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCC
Confidence            488999999999872   2245555565432           1333599999999998888753 467999999999999


Q ss_pred             eEEEEEeC
Q 017983           71 GFFIWSAT   78 (363)
Q Consensus        71 G~~~~s~~   78 (363)
                      |+|+++..
T Consensus       190 G~l~i~~~  197 (274)
T 2qe6_A          190 SYLFMTSL  197 (274)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEe
Confidence            99999965

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=97.78  E-value=1.6e-05  Score=75.99  Aligned_cols=100  Identities=14%  Similarity=0.066  Sum_probs=68.4

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeCC
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      |. +.+++.|+++    |+.  +.+...+.. .|+|. +||+|+|+.++|+|.++ ...+|+++.|+|||||++++..+.
T Consensus       200 D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  276 (332)
T 3i53_A          200 DL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV  276 (332)
T ss_dssp             EC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             cC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence            77 7888888765    543  555555654 57776 89999999999999863 257999999999999999998653


Q ss_pred             CCCCChh---hHHH----------HHHHHHHHhhcceEEEEEe
Q 017983           80 VYRHDDR---HRSV----------WNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        80 ~~~~~~e---~~~~----------~~~~~~l~~~~cw~~~~~~  109 (363)
                      .....+.   +...          ...++.+.+.-.++.+...
T Consensus       277 ~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  319 (332)
T 3i53_A          277 AGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH  319 (332)
T ss_dssp             CC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence            2211110   0000          2356667777777666544

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.78  E-value=8.5e-06  Score=80.66  Aligned_cols=75  Identities=15%  Similarity=0.094  Sum_probs=60.0

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccc----ccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHW----DAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~----~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|+++.+++.|+++    |+.+.+...++..+++++++||+|+|....++-    .++...++.++.|+|||||.++++.
T Consensus       261 vDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          261 VEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             EESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            37889999988875    667788888888888888999999998766441    1122468999999999999999997


Q ss_pred             CCC
Q 017983           78 TPV   80 (363)
Q Consensus        78 ~~~   80 (363)
                      .+.
T Consensus       341 n~~  343 (381)
T 3dmg_A          341 NPF  343 (381)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            743

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.77  E-value=3.6e-05  Score=76.59  Aligned_cols=45  Identities=20%  Similarity=0.287  Sum_probs=32.7

Q ss_pred             CCCC-CCcceeeeccccccccccC-CHH-----------------------------------HHHHHHhHhccCCeEEE
Q 017983          277 NTYP-RTYDLLHSSFLLSDVTQRC-DIA-----------------------------------DVAVEMDRILRPGGYVL  319 (363)
Q Consensus       277 lpfp-~sFDlVh~~~~l~~~~~~~-~~~-----------------------------------~~L~Em~RVLRPGG~li  319 (363)
                      -.|| +|||+||++.+||-+.+.. .+.                                   .+|.-..|.|+|||.++
T Consensus       143 rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mv  222 (384)
T 2efj_A          143 RLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRML  222 (384)
T ss_dssp             CCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEE
Confidence            4588 9999999999998554321 221                                   11555589999999999


Q ss_pred             EE
Q 017983          320 VQ  321 (363)
Q Consensus       320 i~  321 (363)
                      +.
T Consensus       223 l~  224 (384)
T 2efj_A          223 LT  224 (384)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.77  E-value=8.2e-05  Score=65.33  Aligned_cols=85  Identities=8%  Similarity=0.047  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      -|.++.+++.|.++    |++ +.+...++..++ ++++||+|+|.. ..    +...++.++.|+|||||++++.... 
T Consensus        95 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~-~~----~~~~~l~~~~~~L~~gG~l~~~~~~-  167 (207)
T 1jsx_A           95 LDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-FA----SLNDMVSWCHHLPGEQGRFYALKGQ-  167 (207)
T ss_dssp             EESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-SS----SHHHHHHHHTTSEEEEEEEEEEESS-
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec-cC----CHHHHHHHHHHhcCCCcEEEEEeCC-
Confidence            37889999988875    655 566666677766 678999999853 22    2347999999999999999998652 


Q ss_pred             CCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983           81 YRHDDRHRSVWNAMVNLTESMCWKAVA  107 (363)
Q Consensus        81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~  107 (363)
                        ...      ..+..+..  +|+.+.
T Consensus       168 --~~~------~~~~~~~~--g~~~~~  184 (207)
T 1jsx_A          168 --MPE------DEIALLPE--EYQVES  184 (207)
T ss_dssp             --CCH------HHHHTSCT--TEEEEE
T ss_pred             --Cch------HHHHHHhc--CCceee
Confidence              112      24455544  777665

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.75  E-value=1.8e-05  Score=85.71  Aligned_cols=72  Identities=14%  Similarity=0.073  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHc----------CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEE
Q 017983            6 KDEHEAQIQFALER----------GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFF   73 (363)
Q Consensus         6 ~D~~~~qvq~A~er----------g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~   73 (363)
                      -|+++.+++.|++|          |.+ +.+.+.++..+|+++++||+|+|..+++|+.+.. ..++.++.|+|||| .+
T Consensus       752 VDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~L  830 (950)
T 3htx_A          752 VDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LL  830 (950)
T ss_dssp             EESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EE
T ss_pred             EECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EE
Confidence            38999999999883          444 6677788999999999999999999998887522 25899999999999 88


Q ss_pred             EEEeC
Q 017983           74 IWSAT   78 (363)
Q Consensus        74 ~~s~~   78 (363)
                      ++++|
T Consensus       831 IISTP  835 (950)
T 3htx_A          831 IVSTP  835 (950)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            88877

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.75  E-value=0.0001  Score=67.06  Aligned_cols=92  Identities=11%  Similarity=0.077  Sum_probs=65.0

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCC---CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFP---DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfp---d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.++.++++|+++    |++ +.+...+++.++++   +++||+|+|...     .+...++.++.|+|||||+|++..
T Consensus       100 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          100 VDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV-----ARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             EESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC-----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            37899999888764    664 56666777788875   789999998642     234579999999999999999974


Q ss_pred             CCCCCCChhhHHHHHHHHHHHhhcceEEEEE
Q 017983           78 TPVYRHDDRHRSVWNAMVNLTESMCWKAVAR  108 (363)
Q Consensus        78 ~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~  108 (363)
                      ....  .    .....+....+...++....
T Consensus       175 g~~~--~----~~~~~~~~~l~~~g~~~~~~  199 (240)
T 1xdz_A          175 AASA--E----EELNAGKKAITTLGGELENI  199 (240)
T ss_dssp             CC-C--H----HHHHHHHHHHHHTTEEEEEE
T ss_pred             CCCc--h----HHHHHHHHHHHHcCCeEeEE
Confidence            4211  1    22344555666677766543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.74  E-value=5.2e-05  Score=72.73  Aligned_cols=68  Identities=9%  Similarity=-0.004  Sum_probs=48.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++-    -+.+++..+. .++++ .+||.|+++.-+
T Consensus        51 ~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l-~~~~~~~~fD~Iv~NlPy  124 (295)
T 3gru_A           51 DDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKELYNNIEIIWGDAL-KVDLNKLDFNKVVANLPY  124 (295)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTT-TSCGGGSCCSEEEEECCG
T ss_pred             cCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhccCCCeEEEECchh-hCCcccCCccEEEEeCcc
Confidence            45999999999999999998753   36677877 7888777652    2334443332 35777 789999987443

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.74  E-value=8e-05  Score=67.55  Aligned_cols=90  Identities=12%  Similarity=0.098  Sum_probs=65.0

Q ss_pred             CCCCHHHHHHHHHc-----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER-----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er-----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++     |.+ +.+...++..+|+++++||+|++.     +. +...++.++.|+|||||++++..+.
T Consensus       127 ~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~-----~~-~~~~~l~~~~~~L~~gG~l~~~~~~  200 (258)
T 2pwy_A          127 YEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD-----LM-EPWKVLEKAALALKPDRFLVAYLPN  200 (258)
T ss_dssp             EESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE-----SS-CGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred             EeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC-----Cc-CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            37889999999887     643 566677788889999999999983     33 3457999999999999999999873


Q ss_pred             CCCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           80 VYRHDDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        80 ~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      .     +  + ...+....+...|..+...
T Consensus       201 ~-----~--~-~~~~~~~l~~~gf~~~~~~  222 (258)
T 2pwy_A          201 I-----T--Q-VLELVRAAEAHPFRLERVL  222 (258)
T ss_dssp             H-----H--H-HHHHHHHHTTTTEEEEEEE
T ss_pred             H-----H--H-HHHHHHHHHHCCCceEEEE
Confidence            2     1  2 2233333445667655433

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.74  E-value=9e-05  Score=66.79  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=57.3

Q ss_pred             CCCCHHHH----HHHHHcCCCceeeecccCC----CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQI----QFALERGIPAILSVIGTQK----LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qv----q~A~erg~p~~~~~~~~~~----LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.|+.++    +.|.++. .+.....++..    +|++ ++||+|+|.. ..+  ++...++.|+.|+|||||+|+++.
T Consensus        87 vD~s~~~l~~~~~~a~~~~-~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~-~~~--~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A           87 VEYSAKPFEKLLELVRERN-NIIPLLFDASKPWKYSGIV-EKVDLIYQDI-AQK--NQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             ECCCHHHHHHHHHHHHHCS-SEEEECSCTTCGGGTTTTC-CCEEEEEECC-CST--THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHhcCC-CeEEEEcCCCCchhhcccc-cceeEEEEec-cCh--hHHHHHHHHHHHHhCCCCEEEEEE
Confidence            37888654    4444442 34444555555    4666 8999999973 222  212245899999999999999985


Q ss_pred             CC--C-CCCChhhHHHH-HHHHHHHhhcceEEEEEec
Q 017983           78 TP--V-YRHDDRHRSVW-NAMVNLTESMCWKAVARSV  110 (363)
Q Consensus        78 ~~--~-~~~~~e~~~~~-~~~~~l~~~~cw~~~~~~~  110 (363)
                      +.  . .+..++  ... +.++.|.+.  ++......
T Consensus       162 ~~~~~~~~~~~~--~~~~~~~~~l~~~--f~~~~~~~  194 (210)
T 1nt2_A          162 KARSIDSTAEPE--EVFKSVLKEMEGD--FKIVKHGS  194 (210)
T ss_dssp             EHHHHCTTSCHH--HHHHHHHHHHHTT--SEEEEEEE
T ss_pred             ecCCccccCCHH--HHHHHHHHHHHhh--cEEeeeec
Confidence            31  1 112222  222 455556655  77776543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.74  E-value=0.0001  Score=68.61  Aligned_cols=88  Identities=11%  Similarity=0.136  Sum_probs=63.0

Q ss_pred             CCCCHHHHHHHHHc-----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER-----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er-----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++     |.+ +.+...++.. ++++++||+|++.     .+ ++..+|.++.|+|||||+++++.+.
T Consensus       141 vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~-----~~-~~~~~l~~~~~~LkpgG~l~i~~~~  213 (275)
T 1yb2_A          141 VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD-----IP-DPWNHVQKIASMMKPGSVATFYLPN  213 (275)
T ss_dssp             ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC-----CS-CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             EECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEEc-----Cc-CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            38899999999887     544 5566666665 8888999999982     33 3458999999999999999999883


Q ss_pred             CCCCChhhHHHHHHHHHHHhhcceEEEEE
Q 017983           80 VYRHDDRHRSVWNAMVNLTESMCWKAVAR  108 (363)
Q Consensus        80 ~~~~~~e~~~~~~~~~~l~~~~cw~~~~~  108 (363)
                      .        .....+........|..+..
T Consensus       214 ~--------~~~~~~~~~l~~~Gf~~~~~  234 (275)
T 1yb2_A          214 F--------DQSEKTVLSLSASGMHHLET  234 (275)
T ss_dssp             H--------HHHHHHHHHSGGGTEEEEEE
T ss_pred             H--------HHHHHHHHHHHHCCCeEEEE
Confidence            2        12234444445566665543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.73  E-value=3.2e-05  Score=68.24  Aligned_cols=67  Identities=12%  Similarity=0.013  Sum_probs=54.0

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++    |++ +.+...++...++++++||+|+|..+.++..       .++.|+|||||+++++.+.
T Consensus       105 vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          105 VERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIP-------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCC-------THHHHTEEEEEEEEEEECS
T ss_pred             EecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchhhhh-------HHHHHhcccCcEEEEEEcC
Confidence            37889999999876    555 5666677777777889999999987775543       3789999999999999884

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.72  E-value=4.4e-05  Score=67.94  Aligned_cols=103  Identities=10%  Similarity=0.057  Sum_probs=67.6

Q ss_pred             CCCCHHHHHHHHHc----CC-CceeeecccCC-CCCCCCCccEEEeCCcccccccCCCchhhhhc--ccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER----GI-PAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQGGKPLLELN--RILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~-p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~--RVLrPGG~~~~s~   77 (363)
                      -|.++.+++.|+++    |+ .+.+...++.. +|+++++||+|++.... +. .+...++.++.  |+|||||.++++.
T Consensus        83 vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~-~~-~~~~~~l~~l~~~~~L~pgG~l~i~~  160 (202)
T 2fpo_A           83 IEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF-RR-GLLEETINLLEDNGWLADEALIYVES  160 (202)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS-ST-TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC-CC-CcHHHHHHHHHhcCccCCCcEEEEEE
Confidence            48899999998865    54 45667777655 78888999999987542 22 22345777885  5799999999986


Q ss_pred             CCCCCCChhhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCC
Q 017983           78 TPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPV  124 (363)
Q Consensus        78 ~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~  124 (363)
                      .+... .++            ..-.|....++. ....++.+|++..
T Consensus       161 ~~~~~-~~~------------~~~~~~~~~~~~-~g~~~~~~~~~~~  193 (202)
T 2fpo_A          161 EVENG-LPT------------VPANWSLHREKV-AGQVAYRLYQREA  193 (202)
T ss_dssp             EGGGC-SCC------------CCTTEEEEEEEE-ETTEEEEEEEECC
T ss_pred             CCCcc-ccc------------cCCcceEEeeec-cCCEEEEEEEECC
Confidence            64321 111            023577665432 2235788998754

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.72  E-value=1.7e-05  Score=78.42  Aligned_cols=92  Identities=16%  Similarity=0.096  Sum_probs=60.7

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc-------------------Cc--eeeeccccccCC
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR-------------------GL--IGMYHDWCESFN  277 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R-------------------gl--~~~~~d~~e~~l  277 (363)
                      ..+|||+|||+|.++..++.+ +..  .|+.+|.+ ++++.+.+.                   |+  +.+++..+...+
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~--~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~  125 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAE--EVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  125 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCS--EEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCC--eEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence            358999999999999988875 321  36777877 555544331                   33  333333332222


Q ss_pred             C-CCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          278 T-YPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       278 p-fp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      . .++.||+|+..-       ++....++....|.|||||.++++
T Consensus       126 ~~~~~~fD~I~lDP-------~~~~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          126 AERHRYFHFIDLDP-------FGSPMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             HHSTTCEEEEEECC-------SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhccCCCCEEEeCC-------CCCHHHHHHHHHHhcCCCCEEEEE
Confidence            2 136899999541       223367899999999999999886

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.69  E-value=8.9e-05  Score=78.17  Aligned_cols=127  Identities=13%  Similarity=0.105  Sum_probs=76.5

Q ss_pred             chhhccccchhHHHHHHH--hhhh-ccc--cCCCCCceEEEecccccHH---HHHhhcCCCeEEEEeecCCcch----HH
Q 017983          191 SEEAFNKDTTHWYALVSD--VYVG-GLA--INWSSVRNVMDMNASYGGF---AAALIDQPLWVMNVVPIDAPDT----LS  258 (363)
Q Consensus       191 ~~e~F~~~~~~W~~~~~~--~y~~-~l~--i~~~~~r~VLDvGCG~G~f---aa~L~~~~v~v~~v~~~d~s~~----L~  258 (363)
                      +-|.|++|.-+-..+-..  ..+. ...  -.......|||+|||+|-+   ++.-+++...-..|.+++.++|    ++
T Consensus       323 tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~  402 (637)
T 4gqb_A          323 TYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLE  402 (637)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHH
T ss_pred             hhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Confidence            578999988776654432  1121 111  1122345799999999976   3333333222234566665533    34


Q ss_pred             HHHhcCc---eeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEE
Q 017983          259 IIFDRGL---IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL  319 (363)
Q Consensus       259 ~a~~Rgl---~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~li  319 (363)
                      ...+.|+   +.+++...+. ...|...|+|++..+=. +-..+.+..+|.-.+|.|||||.++
T Consensus       403 ~v~~N~~~dkVtVI~gd~ee-v~LPEKVDIIVSEwMG~-fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          403 NWQFEEWGSQVTVVSSDMRE-WVAPEKADIIVSELLGS-FADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             HHHHHTTGGGEEEEESCTTT-CCCSSCEEEEECCCCBT-TBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             HHHhccCCCeEEEEeCccee-ccCCcccCEEEEEcCcc-cccccCCHHHHHHHHHhcCCCcEEc
Confidence            4444454   6677765553 56678999999864433 2233456678888899999999853

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.69  E-value=6.1e-05  Score=72.24  Aligned_cols=99  Identities=12%  Similarity=0.099  Sum_probs=65.4

Q ss_pred             CCCCHHHHHHHHHcCCCcee-eecccCCCC---CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCC
Q 017983            6 KDEHEAQIQFALERGIPAIL-SVIGTQKLT---FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~-~~~~~~~LP---fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      -|+++.|++.|++..-.+.. ...+++.++   +|..+||+|+|..++++    ...+|.|+.|+|||||.|++..-|.+
T Consensus       114 VDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s----l~~vL~e~~rvLkpGG~lv~lvkPqf  189 (291)
T 3hp7_A          114 VDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS----LNLILPALAKILVDGGQVVALVKPQF  189 (291)
T ss_dssp             ECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC----GGGTHHHHHHHSCTTCEEEEEECGGG
T ss_pred             EECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh----HHHHHHHHHHHcCcCCEEEEEECccc
Confidence            38888999887664322211 122233333   35567999999877654    35799999999999999999855544


Q ss_pred             CCC------------hhh-HHHHHHHHHHHhhcceEEEEE
Q 017983           82 RHD------------DRH-RSVWNAMVNLTESMCWKAVAR  108 (363)
Q Consensus        82 ~~~------------~e~-~~~~~~~~~l~~~~cw~~~~~  108 (363)
                      ...            +.. +.....+..++....|....-
T Consensus       190 e~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~  229 (291)
T 3hp7_A          190 EAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGL  229 (291)
T ss_dssp             TSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             ccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            211            221 234567888888889987663

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=97.68  E-value=9.4e-05  Score=71.38  Aligned_cols=69  Identities=19%  Similarity=0.238  Sum_probs=53.1

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |+ +.+++.|+++    |+.  +.+...+... ++|.+ ||+|+|+.+++||.+.. ..+|.++.|+|||||++++...
T Consensus       213 D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          213 EL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT-ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             eC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC-CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            67 7888888775    543  5556666543 55544 99999999999997632 3799999999999999999766

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.68  E-value=1.8e-05  Score=74.59  Aligned_cols=72  Identities=13%  Similarity=0.037  Sum_probs=55.1

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCC-----CCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTF-----PDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPf-----pd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.|+.+++.|+++--.. ....+.+.+++     .+++||+|+|+.+++|+.. +...++.++.|+| |||.+++|.+.
T Consensus        73 vD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A           73 FDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             EESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             EECCHHHHHHHHHHHHhc-cceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            488999999999884332 23344444444     2679999999999988854 2356999999999 99999999774

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.67  E-value=3.9e-05  Score=76.49  Aligned_cols=94  Identities=12%  Similarity=0.065  Sum_probs=62.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCC--CCCCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNT--YPRTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lp--fp~sFDlVh~~  289 (363)
                      ..+|||++||+|.|+..++.+..-+..|+.+|.+ ..++.+.+-    |+    +.+++..+...+.  +.+.||+|++.
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD  132 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD  132 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence            3689999999999999888731112357788887 555444332    33    2333333333332  24789999986


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      =       .+....++....+.|+|||.++++
T Consensus       133 P-------~g~~~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A          133 P-------FGTPVPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             C-------SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             C-------CcCHHHHHHHHHHHhCCCCEEEEE
Confidence            3       123356889999999999999886

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=97.67  E-value=8.8e-06  Score=73.66  Aligned_cols=73  Identities=10%  Similarity=-0.059  Sum_probs=57.2

Q ss_pred             CCCCHHHHHHHHHcCC--CceeeecccCCCCCCC-----CCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALERGI--PAILSVIGTQKLTFPD-----DAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~--p~~~~~~~~~~LPfpd-----~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.++.+++.|+++.-  .+.+.+.+...++++.     .+||+|+|+.+++|... +...+|.++.|+|||||++++..
T Consensus        84 vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A           84 LDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             EESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            4889999999998842  4666777777766543     34999999988877653 24689999999999999998885


Q ss_pred             C
Q 017983           78 T   78 (363)
Q Consensus        78 ~   78 (363)
                      .
T Consensus       164 ~  164 (245)
T 3ggd_A          164 L  164 (245)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=97.66  E-value=1.4e-05  Score=73.47  Aligned_cols=66  Identities=8%  Similarity=-0.015  Sum_probs=48.6

Q ss_pred             HHHHHHHc----CC--Cceeeecc---cCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983           12 QIQFALER----GI--PAILSVIG---TQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        12 qvq~A~er----g~--p~~~~~~~---~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      +++.|+++    |+  .+.+...+   ...+||++++||+|+|+.+++|+.+ ...++..+.++++|||+++++..
T Consensus        86 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A           86 TLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFAS-ANALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             CHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSC-HHHHHHHHHHHTTTCSEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCC-HHHHHHHHHHHhCCCCEEEEEEe
Confidence            77777766    33  25556665   6778999999999999999988765 44455555556666999999865

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.65  E-value=7.7e-05  Score=68.88  Aligned_cols=67  Identities=18%  Similarity=0.155  Sum_probs=54.7

Q ss_pred             CCCCHHHHHHHHHc-----C--C-CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER-----G--I-PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er-----g--~-p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.++..++.|+++     |  . .+.+...++..+++++++||+|++..     . ++..++.++.|+|||||+++++.
T Consensus       130 vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~-----~-~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          130 YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM-----L-APWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES-----S-CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEECC-----c-CHHHHHHHHHHhCCCCCEEEEEe
Confidence            48899999999876     4  2 35666777888899999999999832     2 34479999999999999999998


Q ss_pred             C
Q 017983           78 T   78 (363)
Q Consensus        78 ~   78 (363)
                      +
T Consensus       204 ~  204 (280)
T 1i9g_A          204 A  204 (280)
T ss_dssp             S
T ss_pred             C
Confidence            8

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.64  E-value=2.2e-05  Score=76.86  Aligned_cols=102  Identities=12%  Similarity=0.213  Sum_probs=62.4

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC-CC-------------
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT-YP-------------  280 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp-fp-------------  280 (363)
                      .+|||+|||+|.|+..|+....   .|+++|.+ .+++.|.+.    |+  +.++...++..++ ++             
T Consensus       215 ~~vLDl~cG~G~~~l~la~~~~---~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGGGSS---EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CEEEEccCCCCHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            5799999999999999987533   46788888 777766543    33  2233322222222 12             


Q ss_pred             --CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC-HH-HHHHHHHHHH
Q 017983          281 --RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LE-MINKLKPVLH  335 (363)
Q Consensus       281 --~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~-~~~~i~~l~~  335 (363)
                        .+||+|++.      +.+.+   +..++.+.|+|||.+++..- .. ....++.+..
T Consensus       292 ~~~~fD~Vv~d------PPr~g---~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~~  341 (369)
T 3bt7_A          292 KSYQCETIFVD------PPRSG---LDSETEKMVQAYPRILYISCNPETLCKNLETLSQ  341 (369)
T ss_dssp             GGCCEEEEEEC------CCTTC---CCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEC------cCccc---cHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhh
Confidence              279999864      11111   45677788888888777643 22 2334555544

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.63  E-value=3.3e-05  Score=67.39  Aligned_cols=74  Identities=14%  Similarity=0.041  Sum_probs=55.8

Q ss_pred             CCCCHHHHHHHHHc----CC-CceeeecccCCCC--CCCCCccEEEeCCcccccccCCCchhhhhcc--cccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GI-PAILSVIGTQKLT--FPDDAYDLIHCARCRVHWDAQGGKPLLELNR--ILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~-p~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~R--VLrPGG~~~~s   76 (363)
                      -|.++.+++.|+++    |+ .+.+...++..++  +++++||+|+|....++...+...++.++.|  +|||||++++.
T Consensus        73 vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~  152 (189)
T 3p9n_A           73 VESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVE  152 (189)
T ss_dssp             EECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEE
Confidence            37889999998876    55 3566677766653  6689999999976544322334579999988  99999999998


Q ss_pred             eCC
Q 017983           77 ATP   79 (363)
Q Consensus        77 ~~~   79 (363)
                      .+.
T Consensus       153 ~~~  155 (189)
T 3p9n_A          153 RAT  155 (189)
T ss_dssp             EET
T ss_pred             ecC
Confidence            663

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.61  E-value=0.00012  Score=70.59  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |. +.+++.|+++    |++  +.+...+...+|+++.  |+|+|+.++++|.++ ...+|.++.|+|||||++++...
T Consensus       221 D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  296 (359)
T 1x19_A          221 NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  296 (359)
T ss_dssp             EC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             ec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            56 6677777765    554  5666777777888865  999999999999753 35789999999999999988753

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.60  E-value=0.00011  Score=68.35  Aligned_cols=97  Identities=11%  Similarity=0.042  Sum_probs=62.4

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCccc-------------cccc-----------CC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRV-------------HWDA-----------QG   56 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~-------------~~~~-----------~~   56 (363)
                      -|+|+.+++.|+++    |++ +.+...+... ++++++||+|+|....+             |.+.           +.
T Consensus       139 vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~  217 (276)
T 2b3t_A          139 VDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADI  217 (276)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHH
Confidence            48899999998876    655 5555555544 45678999999973222             1110           11


Q ss_pred             CchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecCC
Q 017983           57 GKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDS  112 (363)
Q Consensus        57 ~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~  112 (363)
                      ..++.++.|+|||||++++..+..   .      ...+..+.+...|+.+....+.
T Consensus       218 ~~~l~~~~~~LkpgG~l~~~~~~~---~------~~~~~~~l~~~Gf~~v~~~~d~  264 (276)
T 2b3t_A          218 VHIIEQSRNALVSGGFLLLEHGWQ---Q------GEAVRQAFILAGYHDVETCRDY  264 (276)
T ss_dssp             HHHHHHHGGGEEEEEEEEEECCSS---C------HHHHHHHHHHTTCTTCCEEECT
T ss_pred             HHHHHHHHHhcCCCCEEEEEECch---H------HHHHHHHHHHCCCcEEEEEecC
Confidence            356789999999999999986521   1      2345555666667654443343

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.60  E-value=7.9e-05  Score=66.26  Aligned_cols=104  Identities=10%  Similarity=0.122  Sum_probs=67.9

Q ss_pred             CCCCHHHHHHHHHc----CC---CceeeecccCCC-CC-CCCC-ccEEEeCCcccccccCCCchhhhh--cccccCCeEE
Q 017983            6 KDEHEAQIQFALER----GI---PAILSVIGTQKL-TF-PDDA-YDLIHCARCRVHWDAQGGKPLLEL--NRILRPGGFF   73 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~---p~~~~~~~~~~L-Pf-pd~s-FD~v~cs~~~~~~~~~~~~~l~E~--~RVLrPGG~~   73 (363)
                      -|.++.+++.|+++    |+   .+.+...++..+ +. ++++ ||+|++.... +. .+...++.++  .|+|||||.+
T Consensus        82 vD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~-~~-~~~~~~l~~~~~~~~LkpgG~l  159 (201)
T 2ift_A           82 LELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPF-HF-NLAEQAISLLCENNWLKPNALI  159 (201)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCS-SS-CHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCCC-CC-ccHHHHHHHHHhcCccCCCcEE
Confidence            48899999999875    55   356666676554 33 5789 9999997552 22 2234688888  8899999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCCC
Q 017983           74 IWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSY  126 (363)
Q Consensus        74 ~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~~  126 (363)
                      +++..+..  .++.            .-.|..+.+.. -...++.+|++...+
T Consensus       160 ~i~~~~~~--~~~~------------~~~~~~~~~~~-yG~~~~~~~~~~~~~  197 (201)
T 2ift_A          160 YVETEKDK--PLIT------------PENWTLLKEKT-TGIVSYRLYQNLEHH  197 (201)
T ss_dssp             EEEEESSS--CCCC------------CTTEEEEEEEE-ETTEEEEEEEECC--
T ss_pred             EEEECCCC--Cccc------------cchhHHHHHHh-cCCEEEEEEecchhc
Confidence            99876432  2220            23477665431 123468888887653

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.59  E-value=0.00017  Score=66.87  Aligned_cols=107  Identities=15%  Similarity=0.053  Sum_probs=71.1

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCC---CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFP---DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfp---d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.++.++++|++.    |+. +.+...+++.+++.   +++||+|+|....     +...++.++.|+|||||+|++..
T Consensus       110 vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~~-----~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          110 VDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVA-----PLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             EESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESSC-----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCcC-----CHHHHHHHHHHHcCCCeEEEEEe
Confidence            48899999999875    665 56667778877764   5899999986322     23468999999999999998864


Q ss_pred             CCCCCCChhhHHHHHHHHHHHhhcceEEEEEec-CCC----ceeEEEEecC
Q 017983           78 TPVYRHDDRHRSVWNAMVNLTESMCWKAVARSV-DSN----RIGFVIYQKP  123 (363)
Q Consensus        78 ~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~-~~~----~~~~~i~~k~  123 (363)
                      ..  ...    .....+....+.+.++...... ..+    .-++.+++|.
T Consensus       185 g~--~~~----~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~  229 (249)
T 3g89_A          185 GP--RVE----EELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKT  229 (249)
T ss_dssp             CS--CCH----HHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred             CC--CcH----HHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeC
Confidence            42  122    2344555556667777655321 111    1356666664

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.58  E-value=0.00016  Score=68.77  Aligned_cols=69  Identities=14%  Similarity=0.050  Sum_probs=51.6

Q ss_pred             CCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |. +.+++.|+++    |+  .+.+...+... |+| ++||+|+|+.+++||.+.. ..+|.++.|+|||||++++...
T Consensus       198 D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  273 (334)
T 2ip2_A          198 DR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER  273 (334)
T ss_dssp             EC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             Cc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            44 5556666654    22  25555666555 677 7899999999999997532 3799999999999999999865

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.58  E-value=3.8e-05  Score=74.60  Aligned_cols=69  Identities=12%  Similarity=0.185  Sum_probs=52.0

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCccc--ccccCCCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRV--HWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~--~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      |.++ +++.|+++    |++  +.+...+++.+|+|+++||+|+|.....  ++..+...++.++.|+|||||.++.+
T Consensus        96 D~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A           96 ECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             ECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             CcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            6664 77777654    665  6778888999999999999999964322  22333457889999999999999854

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.58  E-value=4.5e-05  Score=70.12  Aligned_cols=72  Identities=15%  Similarity=0.104  Sum_probs=52.3

Q ss_pred             CCCCHHHHHHHHHc----------CCC-ceeeecccCC-CC--CCCCCccEEEeCCcccccccC--------CCchhhhh
Q 017983            6 KDEHEAQIQFALER----------GIP-AILSVIGTQK-LT--FPDDAYDLIHCARCRVHWDAQ--------GGKPLLEL   63 (363)
Q Consensus         6 ~D~~~~qvq~A~er----------g~p-~~~~~~~~~~-LP--fpd~sFD~v~cs~~~~~~~~~--------~~~~l~E~   63 (363)
                      -|+++.+++.|+++          +.+ +.+...++.. ||  |++++||.|++...- +|...        ...+|.++
T Consensus        76 iDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~d-p~~k~~h~krr~~~~~~l~~~  154 (235)
T 3ckk_A           76 LEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPD-PHFKRTKHKWRIISPTLLAEY  154 (235)
T ss_dssp             EESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC------------CCCHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCC-chhhhhhhhhhhhhHHHHHHH
Confidence            37899999988753          444 5566677776 88  999999999875432 44211        02599999


Q ss_pred             cccccCCeEEEEEeC
Q 017983           64 NRILRPGGFFIWSAT   78 (363)
Q Consensus        64 ~RVLrPGG~~~~s~~   78 (363)
                      .|+|||||.|++++.
T Consensus       155 ~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          155 AYVLRVGGLVYTITD  169 (235)
T ss_dssp             HHHEEEEEEEEEEES
T ss_pred             HHHCCCCCEEEEEeC
Confidence            999999999999866

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=97.57  E-value=0.00034  Score=68.08  Aligned_cols=101  Identities=13%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeCC
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      |. +.+++.|+++    |+.  +.+...+.. .|+|+ .||+|+|+.++++|.+.. ..+|.++.|+|||||+|++..+.
T Consensus       233 D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  309 (369)
T 3gwz_A          233 ER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL  309 (369)
T ss_dssp             EC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred             cC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            66 7788888765    432  555555655 68887 899999999999998632 36999999999999999997543


Q ss_pred             CCCC-Chh--hHHH------------HHHHHHHHhhcceEEEEEec
Q 017983           80 VYRH-DDR--HRSV------------WNAMVNLTESMCWKAVARSV  110 (363)
Q Consensus        80 ~~~~-~~e--~~~~------------~~~~~~l~~~~cw~~~~~~~  110 (363)
                      .... .+.  ....            ...++.+.+.-.++.+....
T Consensus       310 ~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~  355 (369)
T 3gwz_A          310 IDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP  355 (369)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             cCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence            2211 111  0000            23566777777887776543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.55  E-value=4.2e-05  Score=76.74  Aligned_cols=126  Identities=13%  Similarity=0.083  Sum_probs=75.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc------Cc--eeeeccccccCCCC-C-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------GL--IGMYHDWCESFNTY-P-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R------gl--~~~~~d~~e~~lpf-p-~sFDlVh~~  289 (363)
                      ..+|||+|||+|.++.+|+..+.   .|+++|.+ .|++.|.+.      |+  +.+++..+...++. + ++||+|++.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            36999999999999999998764   46788888 788777655      54  44444433333343 4 689999985


Q ss_pred             ccccc-------ccccCCHHHHHHHHhHhccC-CeEEEEEcCHHHHHHHHHHHHhCCceeeee--------cceEEEEEe
Q 017983          290 FLLSD-------VTQRCDIADVAVEMDRILRP-GGYVLVQDTLEMINKLKPVLHSLQWSTNIY--------HDQFLVGKK  353 (363)
Q Consensus       290 ~~l~~-------~~~~~~~~~~L~Em~RVLRP-GG~lii~D~~~~~~~i~~l~~~l~W~~~~~--------~~~~li~~K  353 (363)
                      =-...       ....+  ..-+.++.++|+. +..++|--..  .-.+....+.+.|...++        +|-+|++.+
T Consensus       171 PPrr~~~~grv~~led~--~P~l~~~~~~l~~~~~~~~vK~sP--~ld~~~~~~~l~~~~ev~~vSv~ge~kE~~l~~~~  246 (410)
T 3ll7_A          171 PARRSGADKRVYAIADC--EPDLIPLATELLPFCSSILAKLSP--MIDLWDTLQSLLHVQELHVVAAHGEVKELLVRMSL  246 (410)
T ss_dssp             CEEC-----CCCCGGGE--ESCHHHHHHHHGGGSSEEEEEECT--TSCHHHHHHHCSSEEEEEEEEETTEEEEEEEEECT
T ss_pred             CCCcCCCCceEEehhhc--CCCHHHHHHHHHhhCCcEEEEcCC--CCChHHHHhhCCCCcEEEEEEeCCeEEEEEEEecC
Confidence            22211       11111  2256777776654 4455554321  123344555666766665        555555543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.54  E-value=0.00015  Score=64.47  Aligned_cols=101  Identities=14%  Similarity=0.139  Sum_probs=65.3

Q ss_pred             CCCHHHHHH----HHH----cCCC-ceeeecccCCCCCCCCCccEEEeCCc--cc--ccccCCCchhhhhcccccCCeEE
Q 017983            7 DEHEAQIQF----ALE----RGIP-AILSVIGTQKLTFPDDAYDLIHCARC--RV--HWDAQGGKPLLELNRILRPGGFF   73 (363)
Q Consensus         7 D~~~~qvq~----A~e----rg~p-~~~~~~~~~~LPfpd~sFD~v~cs~~--~~--~~~~~~~~~l~E~~RVLrPGG~~   73 (363)
                      |.++.+++.    |++    ++.+ +.+.+.+++.+||++++ |.|....+  ..  |+..++..+|.|+.|+|||||.|
T Consensus        58 D~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  136 (218)
T 3mq2_A           58 DADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASF  136 (218)
T ss_dssp             ESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEE
Confidence            677776664    322    3554 56777889999999888 88874321  11  23345678999999999999999


Q ss_pred             EEEeCCCC--------CCChh--hHHHHHHHHHHHhhcceEEEEE
Q 017983           74 IWSATPVY--------RHDDR--HRSVWNAMVNLTESMCWKAVAR  108 (363)
Q Consensus        74 ~~s~~~~~--------~~~~e--~~~~~~~~~~l~~~~cw~~~~~  108 (363)
                      +++.....        +..++  .......+..+.....|+....
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~  181 (218)
T 3mq2_A          137 LVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADC  181 (218)
T ss_dssp             EEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             EEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceee
Confidence            99742110        11111  1122344778888888877653

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.53  E-value=0.00034  Score=61.49  Aligned_cols=86  Identities=10%  Similarity=0.036  Sum_probs=61.5

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      -|.++.+++.|+++    |++ +.+...++.......++||+|++.....    +...++.++.|+|||||+++++.+..
T Consensus        70 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~  145 (204)
T 3e05_A           70 LERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAVTL  145 (204)
T ss_dssp             EECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred             EeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEeccc
Confidence            37899999999876    554 4555566644444447899999986553    34579999999999999999997621


Q ss_pred             CCCChhhHHHHHHHHHHHhhcce
Q 017983           81 YRHDDRHRSVWNAMVNLTESMCW  103 (363)
Q Consensus        81 ~~~~~e~~~~~~~~~~l~~~~cw  103 (363)
                              .....+..+.+...|
T Consensus       146 --------~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          146 --------DTLTKAVEFLEDHGY  160 (204)
T ss_dssp             --------HHHHHHHHHHHHTTC
T ss_pred             --------ccHHHHHHHHHHCCC
Confidence                    234455666667777

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.53  E-value=0.00021  Score=63.80  Aligned_cols=67  Identities=10%  Similarity=-0.016  Sum_probs=51.0

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |++  +.+...++........+||+|++....     +.. ++.++.|+|||||+++++..
T Consensus        83 vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A           83 IEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEec
Confidence            37889999998876    666  566666766633334689999987533     233 99999999999999999977

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.52  E-value=0.00025  Score=66.46  Aligned_cols=94  Identities=10%  Similarity=0.103  Sum_probs=66.6

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|++.    |+.  +.+...++..+++ +++||+|++..     +.....++.++.|+|||||+|++....
T Consensus       154 vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~-----p~~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          154 IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY-----VVRTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC-----CSSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECC-----chhHHHHHHHHHHHCCCCeEEEEEEee
Confidence            48899999998875    665  5577778888877 78999999852     122347999999999999999997542


Q ss_pred             CCCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983           80 VYRHDDRHRSVWNAMVNLTESMCWKAVA  107 (363)
Q Consensus        80 ~~~~~~e~~~~~~~~~~l~~~~cw~~~~  107 (363)
                      ......  ....+.+...++...|+...
T Consensus       228 ~~~~~~--~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          228 PEKLMP--REPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             EGGGTT--TTTHHHHHHHHHHTTCEEEE
T ss_pred             cccccc--ccHHHHHHHHHHHcCCeeEE
Confidence            100000  12245667778888887655

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.51  E-value=0.00012  Score=70.50  Aligned_cols=113  Identities=11%  Similarity=0.047  Sum_probs=63.9

Q ss_pred             CceEEEecccccHHHHHhhcC--CCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCC-C--CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTY-P--RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpf-p--~sFDlVh~  288 (363)
                      ..+|||+|||+|+.+..|+..  +.  ..|+++|.+ .+++.+.++    |+  +.+++.......+. +  .+||.|++
T Consensus       103 g~~VLDlcaG~G~kt~~la~~~~~~--g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~  180 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLAALLKNQ--GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL  180 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CCEEEEeCCChhHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence            469999999999999888763  21  136777877 677666554    43  33333223222221 1  58999997


Q ss_pred             c------cccccccc--------cCCH-------HHHHHHHhHhccCCeEEEEEcC----HHHHHHHHHHHHh
Q 017983          289 S------FLLSDVTQ--------RCDI-------ADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS  336 (363)
Q Consensus       289 ~------~~l~~~~~--------~~~~-------~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~  336 (363)
                      .      .++..-++        ..++       .++|....+.|+ ||+++.+.-    .+.-..|+.+++.
T Consensus       181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~  252 (309)
T 2b9e_A          181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQ  252 (309)
T ss_dssp             CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTT
T ss_pred             cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHh
Confidence            2      22321111        1222       246777888887 999998631    2333455555543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.50  E-value=8.9e-05  Score=63.66  Aligned_cols=102  Identities=11%  Similarity=0.075  Sum_probs=64.4

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCC----CCCCCCCccEEEeCCcccccccCCCchhhhh--cccccCCeEE
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQK----LTFPDDAYDLIHCARCRVHWDAQGGKPLLEL--NRILRPGGFF   73 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~----LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~--~RVLrPGG~~   73 (363)
                      -|.++.+++.|+++    |++  +.+...++..    +|+++++||+|+|....+ . .+....+.++  .|+|||||++
T Consensus        73 vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~-~-~~~~~~~~~l~~~~~L~~gG~l  150 (187)
T 2fhp_A           73 IEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA-K-QEIVSQLEKMLERQLLTNEAVI  150 (187)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG-G-CCHHHHHHHHHHTTCEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC-c-hhHHHHHHHHHHhcccCCCCEE
Confidence            37889999988765    443  5566666544    345589999999976532 1 2234577777  9999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecC
Q 017983           74 IWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKP  123 (363)
Q Consensus        74 ~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~  123 (363)
                      +++.+... ..++.            .-+|....+.. .....+.+|++.
T Consensus       151 ~~~~~~~~-~~~~~------------~~~~~~~~~~~-~g~~~~~~~~~~  186 (187)
T 2fhp_A          151 VCETDKTV-KLPET------------IGTLKKTRETV-YGITQVTIYRQE  186 (187)
T ss_dssp             EEEEETTC-CCCSE------------ETTEEEEEEEE-ETTEEEEEEEC-
T ss_pred             EEEeCCcc-ccccc------------ccchhhhhhhc-cCceEEEEEEec
Confidence            99876432 11210            23577665432 223467888763

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.49  E-value=7.6e-05  Score=66.80  Aligned_cols=67  Identities=13%  Similarity=0.008  Sum_probs=51.6

Q ss_pred             CCCCHHHHHHHHHcCC---CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALERGI---PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~---p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++..   .+.+...++.....++++||+|+|..+++|+.       .++.|+|||||+++++.++
T Consensus        98 vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A           98 VEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             EESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEECS
T ss_pred             EeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEcC
Confidence            3789999999998832   45566666655333578999999998776533       5899999999999999773

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.49  E-value=0.00021  Score=64.99  Aligned_cols=66  Identities=18%  Similarity=0.306  Sum_probs=52.7

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |++  +.+...++.. ++++++||+|++.     .+ ++..++.++.|+|||||++++..+
T Consensus       124 ~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~D~v~~~-----~~-~~~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          124 YEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE-GIEEENVDHVILD-----LP-QPERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG-CCCCCSEEEEEEC-----SS-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             EecCHHHHHHHHHHHHHcCCCCceEEEECchhh-ccCCCCcCEEEEC-----CC-CHHHHHHHHHHHcCCCCEEEEEEC
Confidence            48899999999877    665  4566666653 4889999999984     22 345799999999999999999987

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.49  E-value=5.8e-05  Score=70.15  Aligned_cols=69  Identities=14%  Similarity=0.161  Sum_probs=50.5

Q ss_pred             CCCCHHHHHHHHHc--CCCceeeecc----cCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER--GIPAILSVIG----TQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er--g~p~~~~~~~----~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.++.+++.|.++  ..++...+.+    .+.+|+.+++||+|+|..   +++++...++.|+.|+|||||+|+++.
T Consensus       108 vD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~---~~~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          108 VEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADV---AQPEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECC---CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEec---cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence            37899999998876  2333333322    345788999999999853   233334579999999999999999974

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.49  E-value=2.6e-05  Score=75.41  Aligned_cols=71  Identities=13%  Similarity=0.054  Sum_probs=53.5

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccc---c-ccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVH---W-DAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~---~-~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.++.+++.|+++    |+...+...+.  +++++++||+|+|+..+++   + ..+...++.++.|+|||||.|++..
T Consensus       226 vD~s~~~l~~a~~~~~~~~~~~~~~~~d~--~~~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  303 (343)
T 2pjd_A          226 CDVSAPAVEASRATLAANGVEGEVFASNV--FSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (343)
T ss_dssp             EESBHHHHHHHHHHHHHTTCCCEEEECST--TTTCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHhCCCCEEEEccc--cccccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            48899999999876    55555554444  4456889999999876643   1 1123579999999999999999987


Q ss_pred             C
Q 017983           78 T   78 (363)
Q Consensus        78 ~   78 (363)
                      +
T Consensus       304 ~  304 (343)
T 2pjd_A          304 N  304 (343)
T ss_dssp             E
T ss_pred             c
Confidence            6

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.47  E-value=5.1e-05  Score=66.30  Aligned_cols=107  Identities=8%  Similarity=-0.042  Sum_probs=54.4

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCC-----CCccEEEeCCcccccc------cCC--------------
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPD-----DAYDLIHCARCRVHWD------AQG--------------   56 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd-----~sFD~v~cs~~~~~~~------~~~--------------   56 (363)
                      -|.++.+++.|+++    |..+.+.+.++.. ++++     ++||+|+|....++..      ...              
T Consensus        60 vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (215)
T 4dzr_A           60 VDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGED  138 (215)
T ss_dssp             EECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------C
T ss_pred             EECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCc
Confidence            37888888888776    3344555666555 7777     9999999953322211      100              


Q ss_pred             -----CchhhhhcccccCCeE-EEEEeCCCCCCChhhHHHHHHHHHHHh--hcceEEEEEecCCCc-eeEEEEec
Q 017983           57 -----GKPLLELNRILRPGGF-FIWSATPVYRHDDRHRSVWNAMVNLTE--SMCWKAVARSVDSNR-IGFVIYQK  122 (363)
Q Consensus        57 -----~~~l~E~~RVLrPGG~-~~~s~~~~~~~~~e~~~~~~~~~~l~~--~~cw~~~~~~~~~~~-~~~~i~~k  122 (363)
                           ..++.++.|+|||||+ +++..+.   ..      ...+..+..  ...|..+....+..+ ..+.+.+|
T Consensus       139 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~------~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~  204 (215)
T 4dzr_A          139 GLQFYRRMAALPPYVLARGRAGVFLEVGH---NQ------ADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTR  204 (215)
T ss_dssp             TTHHHHHHHTCCGGGBCSSSEEEEEECTT---SC------HHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEEEECC---cc------HHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEE
Confidence                 4678999999999999 6665541   11      234555555  556665554444333 34444444

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.46  E-value=0.00025  Score=65.32  Aligned_cols=92  Identities=12%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCC--CCCCCccEEEeCCccccc-----c--------------cCCCc
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLT--FPDDAYDLIHCARCRVHW-----D--------------AQGGK   58 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~-----~--------------~~~~~   58 (363)
                      -|+++.+++.|+++    |+.  +.+...++..++  |++++||+|+|.-...+.     .              .+...
T Consensus        78 vDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~  157 (259)
T 3lpm_A           78 VEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLED  157 (259)
T ss_dssp             ECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHH
T ss_pred             EECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHH
Confidence            48889999998876    554  667777777665  778999999996332221     0              00124


Q ss_pred             hhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEE
Q 017983           59 PLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAV  106 (363)
Q Consensus        59 ~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~  106 (363)
                      ++.++.|+|||||+|++..++..         ...+..++....|...
T Consensus       158 ~l~~~~~~LkpgG~l~~~~~~~~---------~~~~~~~l~~~~~~~~  196 (259)
T 3lpm_A          158 TIRVAASLLKQGGKANFVHRPER---------LLDIIDIMRKYRLEPK  196 (259)
T ss_dssp             HHHHHHHHEEEEEEEEEEECTTT---------HHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHccCCcEEEEEEcHHH---------HHHHHHHHHHCCCceE
Confidence            88999999999999999876421         2234445555555544

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.45  E-value=0.00019  Score=68.67  Aligned_cols=115  Identities=14%  Similarity=0.143  Sum_probs=74.3

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCC-CCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLT-FPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LP-fpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |. +.+++.|+++    ++.  +.+...+....+ |+.+.||+|+|+.+++||.+. ...+|.++.|+|||||+|++..+
T Consensus       210 D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (352)
T 3mcz_A          210 DL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM  288 (352)
T ss_dssp             EC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            44 3456666554    543  555666666665 345679999999999999753 25799999999999999999754


Q ss_pred             CCCC--CChhhHH----------------HHHHHHHHHhhcceEEEEEecCCCceeEEEEecCC
Q 017983           79 PVYR--HDDRHRS----------------VWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPV  124 (363)
Q Consensus        79 ~~~~--~~~e~~~----------------~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~  124 (363)
                      ....  ..+....                ....++.+.+.-.++.+....  ..-.+.+-+||.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~--g~~~l~~a~kp~  350 (352)
T 3mcz_A          289 TMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERSI--GRYTLLIGQRSS  350 (352)
T ss_dssp             CCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEEE--TTEEEEEEECCC
T ss_pred             ccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeecc--CceEEEEEecCC
Confidence            2211  1111100                023567788888888887432  223466667774

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.45  E-value=0.00012  Score=65.50  Aligned_cols=67  Identities=21%  Similarity=0.205  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHHHc----CC------CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEE
Q 017983            6 KDEHEAQIQFALER----GI------PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIW   75 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~------p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~   75 (363)
                      -|.++.+++.|+++    |.      .+.+...++...++++++||+|++.....       .++.++.|+|||||++++
T Consensus       108 vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~-------~~~~~~~~~LkpgG~lv~  180 (226)
T 1i1n_A          108 IDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAP-------VVPQALIDQLKPGGRLIL  180 (226)
T ss_dssp             EESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBS-------SCCHHHHHTEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEECCchH-------HHHHHHHHhcCCCcEEEE
Confidence            37889999988765    22      35666667766777788999999976553       366899999999999999


Q ss_pred             EeCC
Q 017983           76 SATP   79 (363)
Q Consensus        76 s~~~   79 (363)
                      +.++
T Consensus       181 ~~~~  184 (226)
T 1i1n_A          181 PVGP  184 (226)
T ss_dssp             EESC
T ss_pred             EEec
Confidence            9774

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=97.44  E-value=0.00026  Score=68.03  Aligned_cols=100  Identities=13%  Similarity=0.117  Sum_probs=66.4

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeCC
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      |. +.+++.|+++    |++  +.+...+... ++|.+ ||+|+|+.+++||.+.. ..+|.++.|+|||||++++..+.
T Consensus       214 D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~-~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          214 EM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRK-ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSC-EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCC-ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            44 5667777654    553  5566666543 55544 99999999999997532 47999999999999999998664


Q ss_pred             -CCC-CChhh---HH------------HHHHHHHHHhhcceEEEEEe
Q 017983           80 -VYR-HDDRH---RS------------VWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        80 -~~~-~~~e~---~~------------~~~~~~~l~~~~cw~~~~~~  109 (363)
                       ... ..+..   ..            ....+..+.+...++.+...
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  337 (360)
T 1tw3_A          291 DLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR  337 (360)
T ss_dssp             BCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence             211 11110   00            02456777888888877644

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.43  E-value=0.00023  Score=67.36  Aligned_cols=64  Identities=13%  Similarity=0.205  Sum_probs=46.5

Q ss_pred             eEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC---ceeeeccccccCCCCC--CCcceeeecc
Q 017983          223 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG---LIGMYHDWCESFNTYP--RTYDLLHSSF  290 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg---l~~~~~d~~e~~lpfp--~sFDlVh~~~  290 (363)
                      +|||+|||+|.++..|++.+.   .|+++|.+ +|++.+.++-   -+.+++.... .++++  ..||.|+++.
T Consensus        49 ~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l-~~~~~~~~~~~~iv~Nl  118 (271)
T 3fut_A           49 PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSGLPVRLVFQDAL-LYPWEEVPQGSLLVANL  118 (271)
T ss_dssp             CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTTSSEEEEESCGG-GSCGGGSCTTEEEEEEE
T ss_pred             eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCCCCEEEEECChh-hCChhhccCccEEEecC
Confidence            899999999999999998864   36777887 8998887763   2344443332 25565  3789888774

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.41  E-value=3.8e-05  Score=70.10  Aligned_cols=69  Identities=12%  Similarity=0.306  Sum_probs=44.9

Q ss_pred             CCCC-HHHHHHH---HH----cCCC-ceeeecccCCCCCCCCCccEEEeCCcccccc-------cCCCchhhhhcccccC
Q 017983            6 KDEH-EAQIQFA---LE----RGIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWD-------AQGGKPLLELNRILRP   69 (363)
Q Consensus         6 ~D~~-~~qvq~A---~e----rg~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~-------~~~~~~l~E~~RVLrP   69 (363)
                      -|.| +++++.|   ++    .|++ +.+...+++.+|.  ..||.|.|..+..+|+       .+...+|.|+.|+|||
T Consensus        54 vD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~--~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp  131 (225)
T 3p2e_A           54 IDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF--ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKK  131 (225)
T ss_dssp             ECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG--GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEE
T ss_pred             EeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh--hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCC
Confidence            3778 6666665   43    3665 5667777888864  3334444433333332       2234689999999999


Q ss_pred             CeEEEEE
Q 017983           70 GGFFIWS   76 (363)
Q Consensus        70 GG~~~~s   76 (363)
                      ||+|++.
T Consensus       132 GG~l~i~  138 (225)
T 3p2e_A          132 EAHFEFV  138 (225)
T ss_dssp             EEEEEEE
T ss_pred             CcEEEEE
Confidence            9999994

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.41  E-value=0.00013  Score=69.61  Aligned_cols=67  Identities=16%  Similarity=0.032  Sum_probs=53.5

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++    |++ +.+...+...++.++++||+|+|...++|..       .++.|+|||||.++++..+
T Consensus       106 vD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          106 VEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBCB
T ss_pred             EECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEECC
Confidence            37899999999887    655 5666677777666788999999987776533       6889999999999999663

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.41  E-value=0.0011  Score=59.83  Aligned_cols=96  Identities=14%  Similarity=0.057  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHcC--CC-ceeeecccCC----CCCCCCCccEEEeCCcccccccCC---CchhhhhcccccCCeEEEE
Q 017983            6 KDEHEAQIQFALERG--IP-AILSVIGTQK----LTFPDDAYDLIHCARCRVHWDAQG---GKPLLELNRILRPGGFFIW   75 (363)
Q Consensus         6 ~D~~~~qvq~A~erg--~p-~~~~~~~~~~----LPfpd~sFD~v~cs~~~~~~~~~~---~~~l~E~~RVLrPGG~~~~   75 (363)
                      -|.++.+++.|.++-  .+ +.+...++..    +|++ ++||+|++.     .. ++   ..++.++.|+|||||++++
T Consensus       104 vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~-----~~-~~~~~~~~l~~~~~~LkpgG~l~i  176 (230)
T 1fbn_A          104 IEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYED-----VA-QPNQAEILIKNAKWFLKKGGYGMI  176 (230)
T ss_dssp             EESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEEC-----CC-STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEEe-----cC-ChhHHHHHHHHHHHhCCCCcEEEE
Confidence            478999999888762  12 4455566777    8888 899999832     22 23   4579999999999999999


Q ss_pred             EeCCC-C-CCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           76 SATPV-Y-RHDDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        76 s~~~~-~-~~~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      +.... . ...+...-..+.++ +.....++.+...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~  211 (230)
T 1fbn_A          177 AIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV  211 (230)
T ss_dssp             EEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred             EEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE
Confidence            62210 0 11111111224566 5556667665543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=97.37  E-value=0.00047  Score=59.57  Aligned_cols=89  Identities=8%  Similarity=-0.035  Sum_probs=61.8

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccC--------CCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ--------GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~--------~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.+++.    .-.+.+.+.++.. |+++++||+|+|+...++..+.        ...++.++.|.| |||.++++.+
T Consensus        51 D~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~  124 (170)
T 3q87_B           51 DLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI  124 (170)
T ss_dssp             ESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred             ECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence            778888877    2235566667666 8888999999998776543322        246888999999 9999999865


Q ss_pred             CCCCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           79 PVYRHDDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        79 ~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      ...        ....+..+.+...|+...-.
T Consensus       125 ~~~--------~~~~l~~~l~~~gf~~~~~~  147 (170)
T 3q87_B          125 EAN--------RPKEVLARLEERGYGTRILK  147 (170)
T ss_dssp             GGG--------CHHHHHHHHHHTTCEEEEEE
T ss_pred             cCC--------CHHHHHHHHHHCCCcEEEEE
Confidence            211        12356666777778766543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.37  E-value=0.00021  Score=61.07  Aligned_cols=85  Identities=14%  Similarity=0.107  Sum_probs=58.9

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCC-CCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPD-DAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd-~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |+  .+.+...+... ++++ ++||+|+|+.+..++    ..++.++.|+|+|||++++..+
T Consensus        61 ~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~----~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           61 IDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGSGGEL----QEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCCTTCH----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCchHHH----HHHHHHHHHhcCCCcEEEEEec
Confidence            37888999998874    44  34555555444 4444 689999998765442    4799999999999999999876


Q ss_pred             CCCCCChhhHHHHHHHHHHHhhcce
Q 017983           79 PVYRHDDRHRSVWNAMVNLTESMCW  103 (363)
Q Consensus        79 ~~~~~~~e~~~~~~~~~~l~~~~cw  103 (363)
                      .        ......+..+.+...|
T Consensus       136 ~--------~~~~~~~~~~l~~~g~  152 (192)
T 1l3i_A          136 L--------LETKFEAMECLRDLGF  152 (192)
T ss_dssp             B--------HHHHHHHHHHHHHTTC
T ss_pred             C--------cchHHHHHHHHHHCCC
Confidence            2        1223445555556655

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.36  E-value=0.00034  Score=72.24  Aligned_cols=107  Identities=10%  Similarity=0.017  Sum_probs=63.9

Q ss_pred             CCceEEEecccccHHHHHhhcC----CC-------------eEEEEeecCCc-chHHHHHhc----Cce-------eeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ----PL-------------WVMNVVPIDAP-DTLSIIFDR----GLI-------GMYH  270 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~----~v-------------~v~~v~~~d~s-~~L~~a~~R----gl~-------~~~~  270 (363)
                      ...+|||.+||+|+|...+.+.    ..             ...++.++|.. .++.+|...    |+.       .+.+
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            3468999999999998776542    10             01146677777 677666543    332       2222


Q ss_pred             cccccCCCCC-CCcceeeecccccccccc----------CC-HHHHHHHHhHhccCCeEEEEEcCHHH
Q 017983          271 DWCESFNTYP-RTYDLLHSSFLLSDVTQR----------CD-IADVAVEMDRILRPGGYVLVQDTLEM  326 (363)
Q Consensus       271 d~~e~~lpfp-~sFDlVh~~~~l~~~~~~----------~~-~~~~L~Em~RVLRPGG~lii~D~~~~  326 (363)
                      .......+++ ..||+|+++-=|......          .+ -..++..+.+.|||||++++.-...+
T Consensus       249 gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~  316 (541)
T 2ar0_A          249 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV  316 (541)
T ss_dssp             SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH
T ss_pred             CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcc
Confidence            2111101234 789999997444422110          11 13588999999999999888755443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.36  E-value=3.5e-05  Score=74.96  Aligned_cols=66  Identities=17%  Similarity=0.073  Sum_probs=50.2

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEe
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      |. +.+++.|++.. .+.+...+... |+|+  ||+|+|+.+++||.+.. ..+|+++.|+|||||+|++..
T Consensus       240 D~-~~~~~~a~~~~-~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          240 DL-PQVIENAPPLS-GIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             EC-HHHHTTCCCCT-TEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Ch-HHHHHhhhhcC-CCEEEeCCccc-CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            56 66777665532 24555566655 7886  99999999999997531 279999999999999999984

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.35  E-value=0.00052  Score=66.28  Aligned_cols=92  Identities=14%  Similarity=-0.022  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCccccccc-------CCCchhhhhcccccCCeEE
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-------QGGKPLLELNRILRPGGFF   73 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-------~~~~~l~E~~RVLrPGG~~   73 (363)
                      -|+++.+++.|+++    |++ +.+.+.++..+|++.++||+|+|.--......       ....++.++.|+|||||.+
T Consensus       234 ~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l  313 (354)
T 3tma_A          234 GDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRV  313 (354)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEE
Confidence            48899999988876    664 77888889999999899999999532111010       0136889999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           74 IWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        74 ~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      ++.++.     +      ..++.+.+ ..|+...+.
T Consensus       314 ~i~t~~-----~------~~~~~~~~-~g~~~~~~~  337 (354)
T 3tma_A          314 ALLTLR-----P------ALLKRALP-PGFALRHAR  337 (354)
T ss_dssp             EEEESC-----H------HHHHHHCC-TTEEEEEEE
T ss_pred             EEEeCC-----H------HHHHHHhh-cCcEEEEEE
Confidence            999872     1      23455555 778776654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.35  E-value=0.00033  Score=67.06  Aligned_cols=96  Identities=16%  Similarity=0.212  Sum_probs=62.8

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCC-c----ccc--------cccC--------CCch
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCAR-C----RVH--------WDAQ--------GGKP   59 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~-~----~~~--------~~~~--------~~~~   59 (363)
                      -|.++.+++.|+++    |++ +.+...++..++..+++||+|+|.. |    .++        |..+        ...+
T Consensus       149 vD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~  228 (315)
T 1ixk_A          149 FDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRL  228 (315)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHH
Confidence            58899999988876    764 5667777888776678999999731 1    111        1100        0368


Q ss_pred             hhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEE
Q 017983           60 LLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAV  106 (363)
Q Consensus        60 l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~  106 (363)
                      |.++.|+|||||+|++++-.+...  |+.   ..++.+.++..++++
T Consensus       229 L~~~~~~LkpGG~lv~stcs~~~~--Ene---~~v~~~l~~~~~~~~  270 (315)
T 1ixk_A          229 LEKGLEVLKPGGILVYSTCSLEPE--ENE---FVIQWALDNFDVELL  270 (315)
T ss_dssp             HHHHHHHEEEEEEEEEEESCCCGG--GTH---HHHHHHHHHSSEEEE
T ss_pred             HHHHHHhCCCCCEEEEEeCCCChH--HhH---HHHHHHHhcCCCEEe
Confidence            899999999999999987644322  222   234444555555443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.35  E-value=2.3e-05  Score=70.88  Aligned_cols=69  Identities=17%  Similarity=0.149  Sum_probs=54.5

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.++.+++.|+++    |+  .+.+...++..++ ++++||+|+|....++.. +....+.++.|+|||||++++.
T Consensus       106 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~-~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          106 IDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGGPD-YATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSSGG-GGGSSSBCTTTSCSSCHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCCcc-hhhhHHHHHHhhcCCcceeHHH
Confidence            47899999988766    55  4667777777777 778999999987766544 3445889999999999998775

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.34  E-value=0.003  Score=62.55  Aligned_cols=127  Identities=15%  Similarity=0.222  Sum_probs=74.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCCCC-CCcceeeeccccccccccC
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRC  299 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~  299 (363)
                      ..+|||+||.+|+|+-.|++++..   |+++|...|-....+-+.+..+...... ...+ +.||+|+|..+..      
T Consensus       212 G~~vlDLGAaPGGWT~~l~~rg~~---V~aVD~~~l~~~l~~~~~V~~~~~d~~~-~~~~~~~~D~vvsDm~~~------  281 (375)
T 4auk_A          212 GMWAVDLGACPGGWTYQLVKRNMW---VYSVDNGPMAQSLMDTGQVTWLREDGFK-FRPTRSNISWMVCDMVEK------  281 (375)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCE---EEEECSSCCCHHHHTTTCEEEECSCTTT-CCCCSSCEEEEEECCSSC------
T ss_pred             CCEEEEeCcCCCHHHHHHHHCCCE---EEEEEhhhcChhhccCCCeEEEeCcccc-ccCCCCCcCEEEEcCCCC------
Confidence            469999999999999999998865   5566655554544444444333322221 2334 7899999986543      


Q ss_pred             CHHHHHHHHhHhccCC---eEEEEEc----C-----HHHHHHHHHHHHh--CCceeeee-----cceEEEEEeccCCC
Q 017983          300 DIADVAVEMDRILRPG---GYVLVQD----T-----LEMINKLKPVLHS--LQWSTNIY-----HDQFLVGKKGFWRP  358 (363)
Q Consensus       300 ~~~~~L~Em~RVLRPG---G~lii~D----~-----~~~~~~i~~l~~~--l~W~~~~~-----~~~~li~~K~~w~~  358 (363)
                       +..++.-|.+.|..|   +.++...    .     .+.+..+.+...+  +.....+.     ++.+-|+-++.|..
T Consensus       282 -p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~l~akhL~hdReEiTV~~rk~~as  358 (375)
T 4auk_A          282 -PAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIWAA  358 (375)
T ss_dssp             -HHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCSSEEEEEEEECCC-
T ss_pred             -hHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcchhheehhhccCCcEEEEEEEechhc
Confidence             345666777777665   5443321    1     1123344444332  33333332     56666676677753

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.31  E-value=0.00025  Score=62.64  Aligned_cols=65  Identities=20%  Similarity=0.172  Sum_probs=49.5

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCCCCCC-CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFP-DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfp-d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      |.++.+++.|+++    |++ +.+...+.. .+++ +++||+|+|+.+++|..       .++.|+|||||+++++.++
T Consensus       109 D~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          109 ERIPELAEKAERTLRKLGYDNVIVIVGDGT-LGYEPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             ESCHHHHHHHHHHHHHHTCTTEEEEESCGG-GCCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEESS
T ss_pred             eCCHHHHHHHHHHHHHcCCCCeEEEECCcc-cCCCCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEECC
Confidence            7889999999876    544 444455543 3444 78999999998776533       5899999999999999873

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.31  E-value=8.2e-05  Score=71.01  Aligned_cols=99  Identities=14%  Similarity=0.054  Sum_probs=57.0

Q ss_pred             CceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHh---cCc-eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFD---RGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~---Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|+|....++ .+  +..+.++|.. ++...+..   .|. +..+.+.++ ...++ +.||+|+|..+..
T Consensus        91 ~~~VLDLGaAPGGWsQvAa~~~g--v~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~d-v~~l~~~~~DvVLSDmApn  167 (282)
T 3gcz_A           91 TGIVVDLGCGRGGWSYYAASLKN--VKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTD-VFNMEVIPGDTLLCDIGES  167 (282)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTT--EEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCC-GGGSCCCCCSEEEECCCCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcC--CCeeeeEEeccCccccccccccCCCceEEeeCCcc-hhhcCCCCcCEEEecCccC
Confidence            35899999999999997765 34  3345566654 32111110   011 111221111 23456 8999999987765


Q ss_pred             ccccc--C--CHHHHHHHHhHhccCC--eEEEEEcC
Q 017983          294 DVTQR--C--DIADVAVEMDRILRPG--GYVLVQDT  323 (363)
Q Consensus       294 ~~~~~--~--~~~~~L~Em~RVLRPG--G~lii~D~  323 (363)
                       -...  +  ....+|.=..++||||  |.|++--.
T Consensus       168 -sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF  202 (282)
T 3gcz_A          168 -SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL  202 (282)
T ss_dssp             -CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             -CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence             2211  0  1123444557899999  99999643

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.29  E-value=3e-05  Score=77.82  Aligned_cols=81  Identities=11%  Similarity=0.154  Sum_probs=55.7

Q ss_pred             CceeeecccCCCCCC------CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC-----CCCCCC----hh
Q 017983           22 PAILSVIGTQKLTFP------DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT-----PVYRHD----DR   86 (363)
Q Consensus        22 p~~~~~~~~~~LPfp------d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~-----~~~~~~----~e   86 (363)
                      .+.+.+.++..+||.      +++||+|+|.. .++|. +...+|.|+.|+|||||+|+++.-     +.+...    ..
T Consensus       265 rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~-d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~  342 (419)
T 3sso_A          265 RIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINA-HVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQEC  342 (419)
T ss_dssp             TEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHH-HHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCC
T ss_pred             CcEEEEecccccchhhhhhcccCCccEEEECC-cccch-hHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcc
Confidence            466777788899998      89999999974 44443 456899999999999999999733     112111    11


Q ss_pred             hHHHHHHHHHHHhhcceE
Q 017983           87 HRSVWNAMVNLTESMCWK  104 (363)
Q Consensus        87 ~~~~~~~~~~l~~~~cw~  104 (363)
                      ...+.+.++.+...+.|.
T Consensus       343 ~~tii~~lk~l~D~l~~~  360 (419)
T 3sso_A          343 SGTSLGLLKSLIDAIQHQ  360 (419)
T ss_dssp             TTSHHHHHHHHHHHHTGG
T ss_pred             hhHHHHHHHHHHHHhccc
Confidence            234556666666655543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.29  E-value=0.0012  Score=60.63  Aligned_cols=69  Identities=23%  Similarity=0.192  Sum_probs=50.6

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCC-CCCCC--CCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQK-LTFPD--DAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~-LPfpd--~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.++.+++.|+++    |++  +.+...++.. +|..+  ++||+|++...    ..+...++.++.|+|||||++++.
T Consensus        94 vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A           94 LEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDAD----KPNNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             EECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSC----GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCc----hHHHHHHHHHHHHhcCCCeEEEEe
Confidence            47889999998877    665  5666666544 55543  49999998642    212236899999999999999987


Q ss_pred             eC
Q 017983           77 AT   78 (363)
Q Consensus        77 ~~   78 (363)
                      ..
T Consensus       170 ~~  171 (248)
T 3tfw_A          170 NV  171 (248)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.28  E-value=0.00056  Score=68.71  Aligned_cols=76  Identities=14%  Similarity=0.262  Sum_probs=54.8

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCC--CCCCCccEEEe----C-CcccccccC------C----------C
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT--FPDDAYDLIHC----A-RCRVHWDAQ------G----------G   57 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP--fpd~sFD~v~c----s-~~~~~~~~~------~----------~   57 (363)
                      -|.++..++.|.++    |++ +.+...++..++  |++++||+|++    | ...++-..+      +          .
T Consensus       290 ~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~  369 (450)
T 2yxl_A          290 FDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQR  369 (450)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHH
Confidence            48899999888876    774 666677777776  78789999995    2 222111111      0          2


Q ss_pred             chhhhhcccccCCeEEEEEeCCCC
Q 017983           58 KPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        58 ~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      .+|.++.++|||||+|++++-.+.
T Consensus       370 ~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          370 ELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             HHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             HHHHHHHHhcCCCcEEEEEeCCCC
Confidence            579999999999999999977544

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.27  E-value=0.00014  Score=65.69  Aligned_cols=95  Identities=16%  Similarity=0.101  Sum_probs=57.6

Q ss_pred             CCCHHHHH----HHHHcCCCceeeecccCC---CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            7 DEHEAQIQ----FALERGIPAILSVIGTQK---LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         7 D~~~~qvq----~A~erg~p~~~~~~~~~~---LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      |.++.+++    .|.++ -.+.+...++..   +|+++++||+|+|...   ..+....++.++.|+|||||.++++..+
T Consensus       109 D~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          109 EFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             CCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            78866544    44443 335566666655   6778899999999644   1111123588899999999999998653


Q ss_pred             C---CCCChhhHHHHHHHHHHHhhcceEEEE
Q 017983           80 V---YRHDDRHRSVWNAMVNLTESMCWKAVA  107 (363)
Q Consensus        80 ~---~~~~~e~~~~~~~~~~l~~~~cw~~~~  107 (363)
                      .   ....++ ...-+. ..+.....++.+.
T Consensus       185 ~~~~~~~~~~-~~~~~~-~~~l~~~Gf~~~~  213 (233)
T 2ipx_A          185 NCIDSTASAE-AVFASE-VKKMQQENMKPQE  213 (233)
T ss_dssp             HHHCSSSCHH-HHHHHH-HHTTGGGTEEEEE
T ss_pred             cccccCCCHH-HHHHHH-HHHHHHCCCceEE
Confidence            1   111111 111122 3556666777765

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.26  E-value=0.00098  Score=61.76  Aligned_cols=89  Identities=11%  Similarity=0.094  Sum_probs=61.9

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++    |+  .+.+...+.... +++++||+|++.     .+ ++..++.++.|+|||||.+++..+.
T Consensus       143 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~-----~~-~~~~~l~~~~~~L~pgG~l~~~~~~  215 (277)
T 1o54_A          143 YEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLD-----VP-DPWNYIDKCWEALKGGGRFATVCPT  215 (277)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC-----CS-CGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             EECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEEC-----Cc-CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            48899999999876    55  355556666555 788899999984     22 3457999999999999999999873


Q ss_pred             CCCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           80 VYRHDDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        80 ~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      ..       + ...+....+..+|..+...
T Consensus       216 ~~-------~-~~~~~~~l~~~gf~~~~~~  237 (277)
T 1o54_A          216 TN-------Q-VQETLKKLQELPFIRIEVW  237 (277)
T ss_dssp             HH-------H-HHHHHHHHHHSSEEEEEEE
T ss_pred             HH-------H-HHHHHHHHHHCCCceeEEE
Confidence            21       1 2333334444667655544

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.26  E-value=0.0009  Score=65.35  Aligned_cols=96  Identities=11%  Similarity=-0.015  Sum_probs=64.9

Q ss_pred             CCCCHHHHHHHHHc----CC-CceeeecccCC-CCC-CCCCccEEEeCCcccccccCCCchhhhhcccccCCeE-EEEEe
Q 017983            6 KDEHEAQIQFALER----GI-PAILSVIGTQK-LTF-PDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGF-FIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~-p~~~~~~~~~~-LPf-pd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~-~~~s~   77 (363)
                      -|+++.+++.|+++    |+ .+.+...++.. ||. .+++||+|+++....+..  ...++.++.|+|||||+ ++++.
T Consensus       201 vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~--~~~~l~~~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          201 LDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEA--IRAFVGRGIATLKGPRCAGYFGI  278 (373)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHH--HHHHHHHHHHTBCSTTCEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchHH--HHHHHHHHHHHcccCCeEEEEEE
Confidence            38999999999877    66 46677777777 885 578999999975433222  25789999999999994 46665


Q ss_pred             CCCCCCChhhHHHHHHHHHHHh-hcceEEEE
Q 017983           78 TPVYRHDDRHRSVWNAMVNLTE-SMCWKAVA  107 (363)
Q Consensus        78 ~~~~~~~~e~~~~~~~~~~l~~-~~cw~~~~  107 (363)
                      -.    .++....+..+..+.. ++......
T Consensus       279 ~~----~~~~~~~~~~~~~~l~~~~g~~~~~  305 (373)
T 2qm3_A          279 TR----RESSLDKWREIQKLLLNEFNVVITD  305 (373)
T ss_dssp             CT----TTCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred             ec----CcCCHHHHHHHHHHHHHhcCcchhh
Confidence            42    1122234456666665 66655433

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.25  E-value=0.00059  Score=57.84  Aligned_cols=87  Identities=10%  Similarity=0.023  Sum_probs=62.6

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      -|.++.+++.|+++    |++ +.+...+... ++++++||+|+|+.+     .+...++.++.|+  |||+++++.+..
T Consensus        63 vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~~  134 (183)
T 2yxd_A           63 IDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIVL  134 (183)
T ss_dssp             EECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred             EeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEeccc
Confidence            47889999999877    543 5566666655 888899999999876     2345799999999  999999998621


Q ss_pred             CCCChhhHHHHHHHHHHHhhcceEEEEE
Q 017983           81 YRHDDRHRSVWNAMVNLTESMCWKAVAR  108 (363)
Q Consensus        81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~~  108 (363)
                              .....+..+.+...|+....
T Consensus       135 --------~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          135 --------ENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             --------HHHHHHHHHHHHTTCEEEEE
T ss_pred             --------ccHHHHHHHHHHcCCeEEEE
Confidence                    22344555666666655543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.25  E-value=0.00043  Score=66.23  Aligned_cols=67  Identities=9%  Similarity=-0.030  Sum_probs=47.0

Q ss_pred             CCCCHHHHHHHHHcC----------------CCceeeecccCCC--CCCCCCccEEEeCCcccccccCCCchhhhhcccc
Q 017983            6 KDEHEAQIQFALERG----------------IPAILSVIGTQKL--TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRIL   67 (363)
Q Consensus         6 ~D~~~~qvq~A~erg----------------~p~~~~~~~~~~L--Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVL   67 (363)
                      -|.++.+++.|+++.                -.+.+...++..+  ++++++||+|++...      ++..++.++.|+|
T Consensus       136 vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~------~~~~~l~~~~~~L  209 (336)
T 2b25_A          136 FEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML------NPHVTLPVFYPHL  209 (336)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSS------STTTTHHHHGGGE
T ss_pred             EeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCCCCeeEEEECCC------CHHHHHHHHHHhc
Confidence            378899999998752                2356666777665  688899999998532      2345899999999


Q ss_pred             cCCeEEEEEeC
Q 017983           68 RPGGFFIWSAT   78 (363)
Q Consensus        68 rPGG~~~~s~~   78 (363)
                      ||||.|++..+
T Consensus       210 kpgG~lv~~~~  220 (336)
T 2b25_A          210 KHGGVCAVYVV  220 (336)
T ss_dssp             EEEEEEEEEES
T ss_pred             CCCcEEEEEeC
Confidence            99999999877

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.24  E-value=0.00027  Score=75.15  Aligned_cols=127  Identities=12%  Similarity=0.075  Sum_probs=72.6

Q ss_pred             chhhccccchhHHHHHHH--hhhhccccCCCCCceEEEecccccHHHH----Hh--hc------CCCeEEEEeecCCc-c
Q 017983          191 SEEAFNKDTTHWYALVSD--VYVGGLAINWSSVRNVMDMNASYGGFAA----AL--ID------QPLWVMNVVPIDAP-D  255 (363)
Q Consensus       191 ~~e~F~~~~~~W~~~~~~--~y~~~l~i~~~~~r~VLDvGCG~G~faa----~L--~~------~~v~v~~v~~~d~s-~  255 (363)
                      +-|.|.+|.-+-..+-..  ..+..+.-+.+....|||+|||+|-+..    +.  ++      .......|.+++.+ +
T Consensus       378 tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~  457 (745)
T 3ua3_A          378 VYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPN  457 (745)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHH
T ss_pred             HHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChH
Confidence            568899988777664432  0111111011223579999999998732    11  12      00112245666665 2


Q ss_pred             ---hHHHHHhcCc---eeeeccccccCCCC------CCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEE
Q 017983          256 ---TLSIIFDRGL---IGMYHDWCESFNTY------PRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL  319 (363)
Q Consensus       256 ---~L~~a~~Rgl---~~~~~d~~e~~lpf------p~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~li  319 (363)
                         .++.....|+   +.+++..++. ...      |...|+|++..+=. +-..+.+...|.-++|.|||||.++
T Consensus       458 A~~~l~~~~~Ng~~d~VtVI~gd~ee-v~lp~~~~~~ekVDIIVSElmGs-fl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          458 AIVTLKYMNVRTWKRRVTIIESDMRS-LPGIAKDRGFEQPDIIVSELLGS-FGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHHHHHHHHTTTTCSEEEESCGGG-HHHHHHHTTCCCCSEEEECCCBT-TBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             HHHHHHHHHhcCCCCeEEEEeCchhh-cccccccCCCCcccEEEEecccc-ccchhccHHHHHHHHHhCCCCcEEE
Confidence               2333333343   5566655543 334      68899999875533 3334456678888899999999754

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.23  E-value=0.00013  Score=70.20  Aligned_cols=53  Identities=13%  Similarity=0.092  Sum_probs=42.6

Q ss_pred             ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeC
Q 017983           23 AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        23 ~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      +.+...+.. .|+|  +||+|+++.++|||.+.. ..+|+++.|+|||||+|++...
T Consensus       234 v~~~~~d~~-~~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          234 WKVVEGDFL-REVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             EEEEECCTT-TCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             eEEEecCCC-CCCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            444555553 4666  999999999999998642 5899999999999999999865

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.23  E-value=9.3e-05  Score=69.33  Aligned_cols=71  Identities=13%  Similarity=0.041  Sum_probs=44.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcc--------hHHHHHhc----Cc---eeeeccccccCCC-CC---C
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD--------TLSIIFDR----GL---IGMYHDWCESFNT-YP---R  281 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~--------~L~~a~~R----gl---~~~~~d~~e~~lp-fp---~  281 (363)
                      ..+|||+|||+|.++..|+..+..   |+++|.+.        +++.+.+.    |+   +.+++...+..++ ++   +
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~g~~---V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~  160 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASLGLT---VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG  160 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHTTCC---EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred             cCeEEEeeCccCHHHHHHHHhCCE---EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence            358999999999999999987644   44555442        34444332    21   3344433333343 44   6


Q ss_pred             Ccceeeecccccc
Q 017983          282 TYDLLHSSFLLSD  294 (363)
Q Consensus       282 sFDlVh~~~~l~~  294 (363)
                      +||+|++.-.+.|
T Consensus       161 ~fD~V~~dP~~~~  173 (258)
T 2r6z_A          161 KPDIVYLDPMYPE  173 (258)
T ss_dssp             CCSEEEECCCC--
T ss_pred             CccEEEECCCCCC
Confidence            8999999877765

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.23  E-value=0.00014  Score=68.35  Aligned_cols=113  Identities=14%  Similarity=0.085  Sum_probs=64.1

Q ss_pred             cccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-ch-------HHHHHhc----C-c---eeeeccccccCC
Q 017983          214 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DT-------LSIIFDR----G-L---IGMYHDWCESFN  277 (363)
Q Consensus       214 l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~-------L~~a~~R----g-l---~~~~~d~~e~~l  277 (363)
                      +++..+...+|||++||+|.++..|+..+..   |+.+|.+ .+       ++.+.+.    | +   +.+++......+
T Consensus        82 l~l~~g~~~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L  158 (258)
T 2oyr_A           82 VGIKGDYLPDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL  158 (258)
T ss_dssp             TTCBTTBCCCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS
T ss_pred             hcccCCCCCEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHH
Confidence            3344442369999999999999999887654   5556665 33       2222211    1 1   334544444446


Q ss_pred             CC-CCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHH
Q 017983          278 TY-PRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVL  334 (363)
Q Consensus       278 pf-p~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~  334 (363)
                      +. +.+||+|++.-.+.+- ..   ..++++..|+||+.+-- -.|..+.++...+++
T Consensus       159 ~~~~~~fDvV~lDP~y~~~-~~---saavkk~~~~lr~l~~~-~~~~~~ll~~a~~~a  211 (258)
T 2oyr_A          159 TDITPRPQVVYLDPMFPHK-QK---SALVKKEMRVFQSLVGP-DLDADGLLEPARLLA  211 (258)
T ss_dssp             TTCSSCCSEEEECCCCCCC-CC--------HHHHHHHHHSCC-CTTGGGGHHHHHHHC
T ss_pred             HhCcccCCEEEEcCCCCCc-cc---chHHHHHHHHHHHhhcC-CccHHHHHHHHHHhc
Confidence            64 4679999999777652 21   25778888999886621 112233445555544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.22  E-value=0.00092  Score=65.76  Aligned_cols=105  Identities=13%  Similarity=0.097  Sum_probs=65.3

Q ss_pred             CCCCHHHHHHHHHc----CCC----ceeeecccCCCCCCCCCccEEEeCCccccccc--CC--CchhhhhcccccCCeEE
Q 017983            6 KDEHEAQIQFALER----GIP----AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA--QG--GKPLLELNRILRPGGFF   73 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p----~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~--~~--~~~l~E~~RVLrPGG~~   73 (363)
                      -|.++.+++.|+++    |+.    +.+...+... ++++++||+|+|....++...  +.  ..++.++.|+|||||.|
T Consensus       252 vD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l  330 (375)
T 4dcm_A          252 VDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL  330 (375)
T ss_dssp             EESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEE
T ss_pred             EECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEE
Confidence            38899999998875    433    4445556554 788999999999866543211  11  14789999999999999


Q ss_pred             EEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCC
Q 017983           74 IWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVS  125 (363)
Q Consensus        74 ~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~  125 (363)
                      +++..   +..+-    ...++.+..  ..+.+++..     +..|++....
T Consensus       331 ~iv~n---~~~~~----~~~l~~~fg--~~~~~a~~~-----~F~V~~~~~~  368 (375)
T 4dcm_A          331 YIVAN---RHLDY----FHKLKKIFG--NCTTIATNN-----KFVVLKAVKL  368 (375)
T ss_dssp             EEEEE---TTSCH----HHHHHHHHS--CCEEEEECS-----SEEEEEEECC
T ss_pred             EEEEE---CCcCH----HHHHHHhcC--CEEEEeeCC-----CEEEEEEcCc
Confidence            99876   22221    123444333  233444432     3788776544

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.21  E-value=0.00051  Score=61.78  Aligned_cols=67  Identities=9%  Similarity=0.051  Sum_probs=51.9

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|+++    |+  .+.+...+.....+++++||+|++..     . ++..++.++.|+|||||++++..+
T Consensus       119 vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-----~-~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          119 FEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV-----R-EPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS-----S-CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             EecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC-----c-CHHHHHHHHHHHcCCCCEEEEEeC
Confidence            48899999999876    44  34555566666444788999999842     1 345799999999999999999988

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.20  E-value=8.9e-05  Score=71.47  Aligned_cols=66  Identities=9%  Similarity=0.034  Sum_probs=50.4

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCC--chhhhhcccccC---CeEEEEEeC
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGG--KPLLELNRILRP---GGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~--~~l~E~~RVLrP---GG~~~~s~~   78 (363)
                      |. +.+++.|++.. .+.+...+... |+|+  ||+|+|+.+++||.+ ..  .+|+++.|+|||   ||++++..+
T Consensus       219 D~-~~~~~~a~~~~-~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e~  289 (352)
T 1fp2_A          219 DR-PQVVENLSGSN-NLTYVGGDMFT-SIPN--ADAVLLKYILHNWTD-KDCLRILKKCKEAVTNDGKRGKVTIIDM  289 (352)
T ss_dssp             EC-HHHHTTCCCBT-TEEEEECCTTT-CCCC--CSEEEEESCGGGSCH-HHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             eC-HHHHhhcccCC-CcEEEeccccC-CCCC--ccEEEeehhhccCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            55 66777665542 14555556544 7774  999999999999975 34  799999999999   999999865

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.19  E-value=0.0003  Score=65.63  Aligned_cols=41  Identities=5%  Similarity=0.110  Sum_probs=31.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG  264 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg  264 (363)
                      ..+|||+|||+|.++. |... .. ..|+++|.+ .|++.+.++.
T Consensus        22 ~~~VLEIG~G~G~lt~-l~~~-~~-~~v~avEid~~~~~~a~~~~   63 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-PVGE-RL-DQLTVIELDRDLAARLQTHP   63 (252)
T ss_dssp             TCCEEEECCTTTTTHH-HHHT-TC-SCEEEECCCHHHHHHHHTCT
T ss_pred             cCEEEEECCCCcHHHH-hhhC-CC-CeEEEEECCHHHHHHHHHHh
Confidence            4589999999999999 7542 22 016777888 8999988863

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.18  E-value=0.0004  Score=64.95  Aligned_cols=40  Identities=10%  Similarity=0.294  Sum_probs=33.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR  263 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R  263 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.+.++
T Consensus        30 ~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~   70 (255)
T 3tqs_A           30 TDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKK   70 (255)
T ss_dssp             TCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHH
T ss_pred             cCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHH
Confidence            46999999999999999998763   46778888 888888776

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.17  E-value=6.2e-05  Score=75.86  Aligned_cols=70  Identities=13%  Similarity=0.083  Sum_probs=53.5

Q ss_pred             CCCHHHHHHHHH-----------cCC---CceeeecccCCCCCCC--CCccEEEeCCcccccccCCCchhhhhcccccCC
Q 017983            7 DEHEAQIQFALE-----------RGI---PAILSVIGTQKLTFPD--DAYDLIHCARCRVHWDAQGGKPLLELNRILRPG   70 (363)
Q Consensus         7 D~~~~qvq~A~e-----------rg~---p~~~~~~~~~~LPfpd--~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPG   70 (363)
                      |+++.+++.|.+           .|+   .+.+...++..+||++  .+||+|+|.-.+ ++. +....|.|+.|+||||
T Consensus       204 DiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~p-dl~~aL~Ei~RvLKPG  281 (438)
T 3uwp_A          204 EKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-FGP-EVDHQLKERFANMKEG  281 (438)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CCH-HHHHHHHHHHTTSCTT
T ss_pred             eCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccc-cCc-hHHHHHHHHHHcCCCC
Confidence            677777777764           243   4777788898999976  589999986433 333 4567899999999999


Q ss_pred             eEEEEEeC
Q 017983           71 GFFIWSAT   78 (363)
Q Consensus        71 G~~~~s~~   78 (363)
                      |.|+.+.+
T Consensus       282 GrIVssE~  289 (438)
T 3uwp_A          282 GRIVSSKP  289 (438)
T ss_dssp             CEEEESSC
T ss_pred             cEEEEeec
Confidence            99998855

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.17  E-value=0.00031  Score=63.03  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=49.2

Q ss_pred             CCCHHHHHHHHHcC---------C-CceeeecccCCCCCCC-CCccEEEeCCcccccccCCCchhhhhcccccCCeEEEE
Q 017983            7 DEHEAQIQFALERG---------I-PAILSVIGTQKLTFPD-DAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIW   75 (363)
Q Consensus         7 D~~~~qvq~A~erg---------~-p~~~~~~~~~~LPfpd-~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~   75 (363)
                      |.++.+++.|+++.         . .+.+...+... ++++ ++||+|++.....+       ++.++.|+|||||++++
T Consensus       121 D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~-------~~~~~~~~LkpgG~lvi  192 (227)
T 1r18_A          121 EHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAPYNAIHVGAAAPD-------TPTELINQLASGGRLIV  192 (227)
T ss_dssp             ESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCSEEEEEECSCBSS-------CCHHHHHTEEEEEEEEE
T ss_pred             EcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCCccEEEECCchHH-------HHHHHHHHhcCCCEEEE
Confidence            78899999988762         2 34555556554 6776 89999999876644       45899999999999999


Q ss_pred             EeC
Q 017983           76 SAT   78 (363)
Q Consensus        76 s~~   78 (363)
                      +..
T Consensus       193 ~~~  195 (227)
T 1r18_A          193 PVG  195 (227)
T ss_dssp             EES
T ss_pred             EEe
Confidence            976

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.14  E-value=0.00089  Score=66.70  Aligned_cols=76  Identities=14%  Similarity=0.223  Sum_probs=53.7

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCC--CCCCCccEEEe----CCc-ccccccC------C----------Cc
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLT--FPDDAYDLIHC----ARC-RVHWDAQ------G----------GK   58 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LP--fpd~sFD~v~c----s~~-~~~~~~~------~----------~~   58 (363)
                      -|.++..++.+.++    |+.+.+...++..++  |++++||+|++    |-. .++-..+      .          ..
T Consensus       276 ~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~  355 (429)
T 1sqg_A          276 VDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSE  355 (429)
T ss_dssp             EESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHH
Confidence            46777777777665    777778888888877  78899999995    321 1111110      0          25


Q ss_pred             hhhhhcccccCCeEEEEEeCCCC
Q 017983           59 PLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        59 ~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      +|.++.++|||||++++++-.+.
T Consensus       356 ~L~~a~~~LkpGG~lvystcs~~  378 (429)
T 1sqg_A          356 ILDAIWPHLKTGGTLVYATCSVL  378 (429)
T ss_dssp             HHHHHGGGEEEEEEEEEEESCCC
T ss_pred             HHHHHHHhcCCCCEEEEEECCCC
Confidence            78999999999999999986443

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.13  E-value=0.00026  Score=67.44  Aligned_cols=72  Identities=19%  Similarity=0.198  Sum_probs=50.6

Q ss_pred             CCCHHHHHHHHHcC---------CCceeeecccCCCCC--CCCCccEEEeCCcccccccC---CCchhhhhcccccCCeE
Q 017983            7 DEHEAQIQFALERG---------IPAILSVIGTQKLTF--PDDAYDLIHCARCRVHWDAQ---GGKPLLELNRILRPGGF   72 (363)
Q Consensus         7 D~~~~qvq~A~erg---------~p~~~~~~~~~~LPf--pd~sFD~v~cs~~~~~~~~~---~~~~l~E~~RVLrPGG~   72 (363)
                      |+++..++.|+++-         -.+.+...++..+++  ++++||+|++......++..   ...++.++.|+|||||.
T Consensus       126 Did~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~  205 (304)
T 3bwc_A          126 DIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGI  205 (304)
T ss_dssp             ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEE
T ss_pred             ECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcE
Confidence            78899999998763         125566666666554  58999999996544332211   13689999999999999


Q ss_pred             EEEEeC
Q 017983           73 FIWSAT   78 (363)
Q Consensus        73 ~~~s~~   78 (363)
                      |++...
T Consensus       206 lv~~~~  211 (304)
T 3bwc_A          206 CCNQGE  211 (304)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            999865

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.12  E-value=0.00018  Score=69.65  Aligned_cols=67  Identities=18%  Similarity=0.183  Sum_probs=49.5

Q ss_pred             CCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCC---cccccccCCCchhhhhcccccCCeEEEE
Q 017983            7 DEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCAR---CRVHWDAQGGKPLLELNRILRPGGFFIW   75 (363)
Q Consensus         7 D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~---~~~~~~~~~~~~l~E~~RVLrPGG~~~~   75 (363)
                      |.++ +++.|+++    |.  .+.+...+++.+++++++||+|+|..   ++.+ ..+...+|.++.|+|||||.++.
T Consensus        94 D~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A           94 DQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLF-ESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             ESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTT-TCHHHHHHHHHHHHEEEEEEEES
T ss_pred             ChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccC-HHHHHHHHHHHHhhcCCCcEEEc
Confidence            5665 77777664    44  35667777889999999999999865   2322 22234689999999999999984

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.12  E-value=0.00023  Score=63.63  Aligned_cols=66  Identities=17%  Similarity=0.149  Sum_probs=51.8

Q ss_pred             CCCHHHHHHHHHc----C-----C-CceeeecccCCCC----CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeE
Q 017983            7 DEHEAQIQFALER----G-----I-PAILSVIGTQKLT----FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGF   72 (363)
Q Consensus         7 D~~~~qvq~A~er----g-----~-p~~~~~~~~~~LP----fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~   72 (363)
                      |.++.+++.|+++    |     . .+.+...++...+    +++++||+|++.....+       ++.++.++|||||+
T Consensus       116 D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~-------~~~~~~~~LkpgG~  188 (227)
T 2pbf_A          116 ERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASE-------LPEILVDLLAENGK  188 (227)
T ss_dssp             ESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSS-------CCHHHHHHEEEEEE
T ss_pred             eCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCCCcCEEEECCchHH-------HHHHHHHhcCCCcE
Confidence            7888999998876    3     2 3566666776666    67889999999865533       57899999999999


Q ss_pred             EEEEeCC
Q 017983           73 FIWSATP   79 (363)
Q Consensus        73 ~~~s~~~   79 (363)
                      ++++.++
T Consensus       189 lv~~~~~  195 (227)
T 2pbf_A          189 LIIPIEE  195 (227)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcc
Confidence            9999773

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.11  E-value=8.9e-05  Score=68.21  Aligned_cols=95  Identities=11%  Similarity=0.098  Sum_probs=58.8

Q ss_pred             CCCCHHHHHHHHHcCCCceee------ecccCCC---CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALERGIPAILS------VIGTQKL---TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~------~~~~~~L---Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|+|+.|++.|+++.-.+...      ......+   +|++.+||+++++.         ..+|.|+.|+|||||+|++.
T Consensus        66 vDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l---------~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A           66 LDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL---------DLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             ECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG---------GGTHHHHHHHSCTTCEEEEE
T ss_pred             EcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH---------HHHHHHHHHhccCCCEEEEE
Confidence            388888999888764322111      1111222   24556677665542         47999999999999999997


Q ss_pred             eCCCCCCC------------hh-hHHHHHHHHHHHhhcceEEEEEe
Q 017983           77 ATPVYRHD------------DR-HRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        77 ~~~~~~~~------------~e-~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      ..|.+...            +. .......+.++++...|+...-.
T Consensus       137 ~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~  182 (232)
T 3opn_A          137 IKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT  182 (232)
T ss_dssp             ECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             ECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence            54332111            11 11235678888888899876643

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.11  E-value=0.0021  Score=59.68  Aligned_cols=41  Identities=15%  Similarity=0.310  Sum_probs=34.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR  263 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R  263 (363)
                      ..+|||+|||+|.++..|++.+.  ..|+++|.+ .|++.+.++
T Consensus        32 ~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A           32 GNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             TCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS
T ss_pred             cCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc
Confidence            46999999999999999998852  247788988 899988887

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.10  E-value=0.00022  Score=64.83  Aligned_cols=67  Identities=15%  Similarity=0.199  Sum_probs=48.6

Q ss_pred             CCCCHHHHHHHHHc----CCC---ceeeecccCC-CC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GIP---AILSVIGTQK-LT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p---~~~~~~~~~~-LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.++.+++.|+++    |+.   +.+...++.. +| +++++||+|++.....    +...++.++.|+|||||++++.
T Consensus        87 vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~~----~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A           87 IDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPM----DLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCTT----THHHHHHHHHHHEEEEEEEEET
T ss_pred             EECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcHH----HHHHHHHHHHHHcCCCcEEEEe
Confidence            37889999888765    654   5555555433 44 4589999999864322    2235899999999999999985

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.10  E-value=0.00041  Score=63.32  Aligned_cols=72  Identities=15%  Similarity=0.115  Sum_probs=51.7

Q ss_pred             CCCCHHHHHHHHHc------------CCC-ceeeecccCC-CC--CCCCCccEEEeCCcccccccCC--------Cchhh
Q 017983            6 KDEHEAQIQFALER------------GIP-AILSVIGTQK-LT--FPDDAYDLIHCARCRVHWDAQG--------GKPLL   61 (363)
Q Consensus         6 ~D~~~~qvq~A~er------------g~p-~~~~~~~~~~-LP--fpd~sFD~v~cs~~~~~~~~~~--------~~~l~   61 (363)
                      -|+++.+++.|.++            |++ +.+...++.. ||  |++++||.|+....- +|....        ..++.
T Consensus        79 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~  157 (246)
T 2vdv_E           79 MEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPD-PHFKQRKHKARIITNTLLS  157 (246)
T ss_dssp             EESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEEEEEEESCC-CC------CSSCCCHHHHH
T ss_pred             EEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccCEEEEECCC-cccccchhHHhhccHHHHH
Confidence            37899999988764            654 5566667665 77  999999999854211 221100        26999


Q ss_pred             hhcccccCCeEEEEEeC
Q 017983           62 ELNRILRPGGFFIWSAT   78 (363)
Q Consensus        62 E~~RVLrPGG~~~~s~~   78 (363)
                      ++.|+|||||+|++.+.
T Consensus       158 ~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          158 EYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             HHHHHEEEEEEEEEEES
T ss_pred             HHHHHcCCCCEEEEEec
Confidence            99999999999999755

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.09  E-value=0.00021  Score=66.02  Aligned_cols=90  Identities=11%  Similarity=0.076  Sum_probs=62.6

Q ss_pred             CCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCCC
Q 017983            7 DEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVYR   82 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~~   82 (363)
                      |+++.+++.|+++    |+.+.+...+... ++++++||+|+|+....+    ...++.++.|+|||||++++++.... 
T Consensus       149 Di~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~~----~~~~l~~~~~~LkpgG~lils~~~~~-  222 (254)
T 2nxc_A          149 DIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL----HAALAPRYREALVPGGRALLTGILKD-  222 (254)
T ss_dssp             ESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH----HHHHHHHHHHHEEEEEEEEEEEEEGG-
T ss_pred             ECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHHH----HHHHHHHHHHHcCCCCEEEEEeeccC-
Confidence            7788888888775    5554555545433 366789999999754433    23689999999999999999865211 


Q ss_pred             CChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           83 HDDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        83 ~~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                             ....+..+.+...++.+...
T Consensus       223 -------~~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          223 -------RAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             -------GHHHHHHHHHHTTCEEEEEE
T ss_pred             -------CHHHHHHHHHHCCCEEEEEe
Confidence                   13456666677778776644

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.08  E-value=0.00031  Score=62.91  Aligned_cols=71  Identities=11%  Similarity=0.125  Sum_probs=49.9

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccC-CCCCCC-----CCccEEEeCCcccccccCCCchhhhhcccccCCeEE
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQ-KLTFPD-----DAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFF   73 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~-~LPfpd-----~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~   73 (363)
                      -|.++.+++.|+++    |+.  +.+...++. .+|...     ++||+|++.....++.+ ...++.++ |+|||||++
T Consensus        89 vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~-~~~~~~~~-~~LkpgG~l  166 (221)
T 3u81_A           89 MEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLP-DTLLLEKC-GLLRKGTVL  166 (221)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHH-HHHHHHHT-TCCCTTCEE
T ss_pred             EeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchH-HHHHHHhc-cccCCCeEE
Confidence            47889999999875    654  556666643 344432     79999999765555443 22466677 999999999


Q ss_pred             EEEeC
Q 017983           74 IWSAT   78 (363)
Q Consensus        74 ~~s~~   78 (363)
                      ++...
T Consensus       167 v~~~~  171 (221)
T 3u81_A          167 LADNV  171 (221)
T ss_dssp             EESCC
T ss_pred             EEeCC
Confidence            99755

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.07  E-value=0.00087  Score=65.60  Aligned_cols=107  Identities=12%  Similarity=-0.007  Sum_probs=71.7

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCCCCCCccEEEeCCcccccccC-------CCchhhhhcccccCCeE
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-------GGKPLLELNRILRPGGF   72 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-------~~~~l~E~~RVLrPGG~   72 (363)
                      -|+++.+++.|+++    |+  .+.+.+.++..+|+++++||+|+|..-......+       ...++.++.|+|  ||.
T Consensus       247 ~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~  324 (373)
T 3tm4_A          247 IEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKR  324 (373)
T ss_dssp             EESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEE
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCe
Confidence            48899999999876    66  5788888999999999999999995321111100       035788999999  455


Q ss_pred             EEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecC-CCceeEEEEecCCC
Q 017983           73 FIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVD-SNRIGFVIYQKPVS  125 (363)
Q Consensus        73 ~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~-~~~~~~~i~~k~~~  125 (363)
                      +++..+.           ...++.+...+.|+...+..- ..+..+.+||+|..
T Consensus       325 ~~~i~~~-----------~~~~~~~~~~~G~~~~~~~~~~nG~l~~~~~~~~~~  367 (373)
T 3tm4_A          325 GVFITTE-----------KKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVKLE  367 (373)
T ss_dssp             EEEEESC-----------HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEET
T ss_pred             EEEEECC-----------HHHHHHHHHHcCCEEEEEEEEEcCCEEEEEEeccCc
Confidence            4444441           134556777888988775432 23356777777643

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.07  E-value=0.0015  Score=61.17  Aligned_cols=69  Identities=14%  Similarity=0.165  Sum_probs=40.7

Q ss_pred             CcceeeeccccccccccCC-HHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee-----cceEEEEEec
Q 017983          282 TYDLLHSSFLLSDVTQRCD-IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY-----HDQFLVGKKG  354 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~-----~~~~li~~K~  354 (363)
                      .||+|+.. .|+.-.+++. -..+|.+|.|+|||||.++.-....   .+++-+..-..++...     +..+++..|.
T Consensus       173 ~~D~iflD-~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa~---~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~  247 (257)
T 2qy6_A          173 KVDAWFLD-GFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAG---FVRRGLQEAGFTMQKRKGFGRKREMLCGVME  247 (257)
T ss_dssp             CEEEEEEC-SSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCBH---HHHHHHHHHTEEEEEECCSTTCCCEEEEEEC
T ss_pred             eEEEEEEC-CCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCCH---HHHHHHHHCCCEEEeCCCCCCCCceEEEEec
Confidence            79999985 3442222211 1579999999999999998633222   2333333334444322     4456766664

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.06  E-value=0.0005  Score=63.73  Aligned_cols=74  Identities=11%  Similarity=0.074  Sum_probs=52.5

Q ss_pred             CCCCHHHHHHHHHcC-------CC--ceeeecccCCC-------CCCCCCccEEEeCCcccc----------------cc
Q 017983            6 KDEHEAQIQFALERG-------IP--AILSVIGTQKL-------TFPDDAYDLIHCARCRVH----------------WD   53 (363)
Q Consensus         6 ~D~~~~qvq~A~erg-------~p--~~~~~~~~~~L-------Pfpd~sFD~v~cs~~~~~----------------~~   53 (363)
                      -|+++.+++.|+++-       +.  +.+...+...+       +|++++||+|+|.--...                ..
T Consensus        66 vDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~  145 (260)
T 2ozv_A           66 YERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMT  145 (260)
T ss_dssp             EESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC--------------------
T ss_pred             EECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcC
Confidence            378899999998763       22  56667777666       478999999999622111                11


Q ss_pred             -cCCCchhhhhcccccCCeEEEEEeCC
Q 017983           54 -AQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus        54 -~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                       .....++.++.|+|||||+|++..++
T Consensus       146 ~~~~~~~l~~~~~~LkpgG~l~~~~~~  172 (260)
T 2ozv_A          146 EGLFEDWIRTASAIMVSGGQLSLISRP  172 (260)
T ss_dssp             -CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             cCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence             11235789999999999999998763

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.06  E-value=0.00014  Score=70.86  Aligned_cols=67  Identities=19%  Similarity=0.009  Sum_probs=49.8

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |. +.+++.|.++. .+.+...+... |+|++  |+|+++.++|+|++.. ..+|+++.|+|||||++++...
T Consensus       234 D~-~~~~~~a~~~~-~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          234 DL-PHVIQDAPAFS-GVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             EC-HHHHTTCCCCT-TEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             eh-HHHHHhhhhcC-CCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            44 55566555431 24555556655 88865  9999999999998643 4689999999999999999855

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.05  E-value=0.0002  Score=68.31  Aligned_cols=73  Identities=12%  Similarity=0.070  Sum_probs=51.6

Q ss_pred             CCCCHHHHHHHHHc--CCC---ceeeecccCCC----CCC--CCCcc-----EEEeCCcccccccCC--Cchhhhhcccc
Q 017983            6 KDEHEAQIQFALER--GIP---AILSVIGTQKL----TFP--DDAYD-----LIHCARCRVHWDAQG--GKPLLELNRIL   67 (363)
Q Consensus         6 ~D~~~~qvq~A~er--g~p---~~~~~~~~~~L----Pfp--d~sFD-----~v~cs~~~~~~~~~~--~~~l~E~~RVL   67 (363)
                      -|.|+.+++.|+++  +.+   +.+...+...+    ..|  +++||     +|+++.++||.+++.  ..+|.++.++|
T Consensus       111 VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L  190 (277)
T 3giw_A          111 VDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPL  190 (277)
T ss_dssp             EECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTS
T ss_pred             EeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhC
Confidence            38999999999987  222   55666776664    222  56677     466766665444432  36999999999


Q ss_pred             cCCeEEEEEeC
Q 017983           68 RPGGFFIWSAT   78 (363)
Q Consensus        68 rPGG~~~~s~~   78 (363)
                      +|||+|+++.-
T Consensus       191 ~PGG~Lvls~~  201 (277)
T 3giw_A          191 PSGSYLAMSIG  201 (277)
T ss_dssp             CTTCEEEEEEE
T ss_pred             CCCcEEEEEec
Confidence            99999999943

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.04  E-value=0.00016  Score=61.06  Aligned_cols=72  Identities=13%  Similarity=0.193  Sum_probs=52.2

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCC-CCC-C--CCCccEEEeCCcccccccCCCchhhhhc--ccccCCeEEEE
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQK-LTF-P--DDAYDLIHCARCRVHWDAQGGKPLLELN--RILRPGGFFIW   75 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~-LPf-p--d~sFD~v~cs~~~~~~~~~~~~~l~E~~--RVLrPGG~~~~   75 (363)
                      -|.++.+++.|+++    ++.+.+...++.. ++. +  +++||+|+|....+   .+...++.++.  |+|||||.+++
T Consensus        69 vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~  145 (171)
T 1ws6_A           69 VEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             ECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEE
Confidence            38899999998875    4456666666554 332 2  34899999976543   23456888888  99999999999


Q ss_pred             EeCCC
Q 017983           76 SATPV   80 (363)
Q Consensus        76 s~~~~   80 (363)
                      +.+..
T Consensus       146 ~~~~~  150 (171)
T 1ws6_A          146 QHPKD  150 (171)
T ss_dssp             EEETT
T ss_pred             EeCCc
Confidence            97743

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.03  E-value=0.00048  Score=66.22  Aligned_cols=100  Identities=18%  Similarity=0.129  Sum_probs=57.2

Q ss_pred             CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHH--H-HhcCc-eeeeccccccCCCCC-CCcceeeecccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSI--I-FDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~--a-~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      +..+|||+||++|+|...+++. ++  ..|.++|.. ++...  . ...+. +..+...++ ..-++ ..||+|+|..+.
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv--~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~d-i~~l~~~~~DlVlsD~AP  157 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEV--MSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSN-VFTMPTEPSDTLLCDIGE  157 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTE--EEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCC-TTTSCCCCCSEEEECCCC
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCC--ceeeeEEeccccccccccccccCCceEEeecCce-eeecCCCCcCEEeecCcC
Confidence            4579999999999999999975 43  345566554 22100  0 00011 111221111 23456 899999997655


Q ss_pred             cccccc--C--CHHHHHHHHhHhccCC-eEEEEEcC
Q 017983          293 SDVTQR--C--DIADVAVEMDRILRPG-GYVLVQDT  323 (363)
Q Consensus       293 ~~~~~~--~--~~~~~L~Em~RVLRPG-G~lii~D~  323 (363)
                      . -...  +  ....+|.=..++|||| |.|++--.
T Consensus       158 n-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF  192 (300)
T 3eld_A          158 S-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVL  192 (300)
T ss_dssp             C-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred             C-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence            4 2111  0  1123344447899999 99999743

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.03  E-value=0.00016  Score=70.51  Aligned_cols=67  Identities=18%  Similarity=0.037  Sum_probs=50.1

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |. ...++.|.++ -.+.+...+... |+|++  |+|+++.++|+|.+. ...+|+++.|+|||||+|++...
T Consensus       232 D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  299 (364)
T 3p9c_A          232 DL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC  299 (364)
T ss_dssp             EC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             cC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            44 4555555443 135556666666 88865  999999999999753 24789999999999999999755

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.02  E-value=0.00056  Score=61.79  Aligned_cols=66  Identities=21%  Similarity=0.250  Sum_probs=49.5

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCC-ccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDA-YDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~s-FD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++.+++.|+++    |++ +.+...+. ..++++++ ||+|++..+..++       ..++.|+|||||+++++.+.
T Consensus       120 vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~~-------~~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          120 IERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAGAPKI-------PEPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSBBSSC-------CHHHHHTEEEEEEEEEEECS
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCcHHHH-------HHHHHHhcCCCcEEEEEEec
Confidence            37888999999875    443 44444455 56787665 9999998766543       35889999999999999873

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.00  E-value=0.0034  Score=55.92  Aligned_cols=98  Identities=9%  Similarity=0.007  Sum_probs=58.4

Q ss_pred             CCCHHHHHHHHHcC---CCceeeecccCCC---CCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            7 DEHEAQIQFALERG---IPAILSVIGTQKL---TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         7 D~~~~qvq~A~erg---~p~~~~~~~~~~L---Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      |.++.+++.|.++-   -.+.+...++...   +...++||+|++...   ..+....++.++.|+|||||+++++....
T Consensus       105 D~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  181 (227)
T 1g8a_A          105 EFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKSR  181 (227)
T ss_dssp             ESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             ECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            78888887776652   2345556666552   222468999998643   11111245999999999999999984321


Q ss_pred             C--CCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           81 Y--RHDDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        81 ~--~~~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      .  ...+...-..+.++.+ ..- ++.+...
T Consensus       182 ~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~  210 (227)
T 1g8a_A          182 SIDVTKEPEQVFREVEREL-SEY-FEVIERL  210 (227)
T ss_dssp             GTCTTSCHHHHHHHHHHHH-HTT-SEEEEEE
T ss_pred             CCCCCCChhhhhHHHHHHH-Hhh-ceeeeEe
Confidence            1  1111122223567777 444 7776644

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=96.99  E-value=0.00038  Score=66.03  Aligned_cols=60  Identities=8%  Similarity=0.114  Sum_probs=39.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCe-EEEEeecCCc-chHHHHHhc--CceeeeccccccCCCCCC
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLW-VMNVVPIDAP-DTLSIIFDR--GLIGMYHDWCESFNTYPR  281 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~-v~~v~~~d~s-~~L~~a~~R--gl~~~~~d~~e~~lpfp~  281 (363)
                      ..+|||+|||+|.++..|++.... -..|+++|.+ +|++.+.++  .-+.+++..+. .++|+.
T Consensus        43 ~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~-~~~~~~  106 (279)
T 3uzu_A           43 GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDAL-TFDFGS  106 (279)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGG-GCCGGG
T ss_pred             cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChh-cCChhH
Confidence            469999999999999999875322 0115677888 899988876  22334443333 255553

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=96.99  E-value=0.00018  Score=60.19  Aligned_cols=55  Identities=13%  Similarity=0.071  Sum_probs=41.8

Q ss_pred             ceeeecccCCCC--------CCCCCccEEEeCCcccccccCC-----------CchhhhhcccccCCeEEEEEeC
Q 017983           23 AILSVIGTQKLT--------FPDDAYDLIHCARCRVHWDAQG-----------GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        23 ~~~~~~~~~~LP--------fpd~sFD~v~cs~~~~~~~~~~-----------~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      +.+...+...+|        +++++||+|+|....++ ..+.           ..++.++.|+|||||.++++.+
T Consensus        64 ~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           64 VDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM-SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             EEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEcccccchhhhhhhccCCCCceeEEEECCCccc-cCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            344555666677        88999999999765533 2222           4789999999999999999876

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.98  E-value=0.00081  Score=71.58  Aligned_cols=107  Identities=10%  Similarity=0.026  Sum_probs=62.8

Q ss_pred             CCceEEEecccccHHHHHhhcCC------C-----------------------------------eEEEEeecCCc-chH
Q 017983          220 SVRNVMDMNASYGGFAAALIDQP------L-----------------------------------WVMNVVPIDAP-DTL  257 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~------v-----------------------------------~v~~v~~~d~s-~~L  257 (363)
                      ....|||.+||+|+|+...+...      .                                   .-..+.++|.+ .++
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            34689999999999976554310      0                                   00247788888 788


Q ss_pred             HHHHhc----Cc---eeeecccccc-CCCCC-CCcceeeec--cccccccccCCHHHH---HHHHhHhccCCeEEEEEcC
Q 017983          258 SIIFDR----GL---IGMYHDWCES-FNTYP-RTYDLLHSS--FLLSDVTQRCDIADV---AVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       258 ~~a~~R----gl---~~~~~d~~e~-~lpfp-~sFDlVh~~--~~l~~~~~~~~~~~~---L~Em~RVLRPGG~lii~D~  323 (363)
                      +.|...    |+   +.+.+..+.. ..|++ ++||+|+++  +.... .+..++..+   |.|+.|.+.|||.++|...
T Consensus       270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rl-g~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~  348 (703)
T 3v97_A          270 QRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERL-DSEPALIALHSLLGRIMKNQFGGWNLSLFSA  348 (703)
T ss_dssp             HHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC----CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccc-cchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            776554    44   3333332322 12454 499999998  33221 122233444   4455555568999998876


Q ss_pred             HHHH
Q 017983          324 LEMI  327 (363)
Q Consensus       324 ~~~~  327 (363)
                      ...+
T Consensus       349 ~~~l  352 (703)
T 3v97_A          349 SPDL  352 (703)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            6543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=96.98  E-value=0.00024  Score=69.65  Aligned_cols=69  Identities=13%  Similarity=0.133  Sum_probs=50.4

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccc---cCCCchhhhhcccccCCeEEEEEe
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWD---AQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~---~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      |.+ .+++.|+++    |++  +.+...+++.++++ ++||+|+|.... ++.   .....++.++.|+|||||.++++.
T Consensus        93 D~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~-~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C           93 EAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMG-YFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             ESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCB-TTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             ccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChh-hcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            566 666666654    555  67777889999998 999999995422 222   223458899999999999998864


Q ss_pred             C
Q 017983           78 T   78 (363)
Q Consensus        78 ~   78 (363)
                      .
T Consensus       170 ~  170 (376)
T 3r0q_C          170 A  170 (376)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=96.97  E-value=0.00056  Score=66.23  Aligned_cols=70  Identities=13%  Similarity=0.155  Sum_probs=52.7

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++ +++.|+++    |+.  +.+...+.+.++++ ++||+|+|....+|+.... ...+.++.|+|||||.++++..
T Consensus        80 D~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (348)
T 2y1w_A           80 EAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIG  156 (348)
T ss_dssp             ECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEE
T ss_pred             CCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecC
Confidence            5564 66777665    553  66677778888887 6899999987777776432 3678899999999999997644

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.96  E-value=0.00046  Score=59.06  Aligned_cols=72  Identities=7%  Similarity=0.085  Sum_probs=51.0

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCC-CCCCCCCccEEEeCCcccccccCCCchhhhhc--ccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQGGKPLLELN--RILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~--RVLrPGG~~~~s   76 (363)
                      -|.++.+++.|+++    |++  +.+...++.. +|+.+++||+|+|....+. . ....++..+.  |+|||||.++++
T Consensus        60 vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~~-~-~~~~~~~~l~~~~~L~~gG~l~~~  137 (177)
T 2esr_A           60 VEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAK-E-TIVATIEALAAKNLLSEQVMVVCE  137 (177)
T ss_dssp             ECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSHH-H-HHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCCCc-c-hHHHHHHHHHhCCCcCCCcEEEEE
Confidence            48899999999875    443  5566666555 5666678999999754321 1 1235666776  999999999998


Q ss_pred             eCC
Q 017983           77 ATP   79 (363)
Q Consensus        77 ~~~   79 (363)
                      .+.
T Consensus       138 ~~~  140 (177)
T 2esr_A          138 TDK  140 (177)
T ss_dssp             EET
T ss_pred             ECC
Confidence            764

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=96.96  E-value=0.00073  Score=61.58  Aligned_cols=53  Identities=9%  Similarity=-0.054  Sum_probs=36.7

Q ss_pred             eeecccCCCCC------CCCCccEEEeCCcccccccCC--------CchhhhhcccccCCeEEEEEeC
Q 017983           25 LSVIGTQKLTF------PDDAYDLIHCARCRVHWDAQG--------GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        25 ~~~~~~~~LPf------pd~sFD~v~cs~~~~~~~~~~--------~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      +...+... ++      +.++||+|+|....++...-.        ..++.++.|+|||||+++++..
T Consensus       149 ~~~~D~~~-~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          149 IRTADVFD-PRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             EEECCTTC-GGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             eeeccccc-ccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            55566544 23      456899999975444432211        2789999999999999999644

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=96.94  E-value=0.00077  Score=69.74  Aligned_cols=100  Identities=15%  Similarity=0.037  Sum_probs=60.3

Q ss_pred             eEEEecccccHHHHHhhcC----C--C--------eEEEEeecCCc-chHHHHHhc----Cce---eeeccccccCCCCC
Q 017983          223 NVMDMNASYGGFAAALIDQ----P--L--------WVMNVVPIDAP-DTLSIIFDR----GLI---GMYHDWCESFNTYP  280 (363)
Q Consensus       223 ~VLDvGCG~G~faa~L~~~----~--v--------~v~~v~~~d~s-~~L~~a~~R----gl~---~~~~d~~e~~lpfp  280 (363)
                      +|||.+||+|+|...+.+.    .  .        ...++.+.|.. .++.+|...    |+.   .+.+...-....++
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~  326 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHP  326 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCT
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccc
Confidence            8999999999997766431    0  0        02368888887 677666543    331   11222111112355


Q ss_pred             -CCcceeeecccccc--c-----------------------cccCC-HHHHHHHHhHhccCCeEEEEEc
Q 017983          281 -RTYDLLHSSFLLSD--V-----------------------TQRCD-IADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       281 -~sFDlVh~~~~l~~--~-----------------------~~~~~-~~~~L~Em~RVLRPGG~lii~D  322 (363)
                       ..||+|+++==|..  +                       +...+ --.+|..+.+.|||||++++--
T Consensus       327 ~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVl  395 (544)
T 3khk_A          327 DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLL  395 (544)
T ss_dssp             TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEe
Confidence             89999999622221  1                       11111 1257899999999999977654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=96.91  E-value=0.00053  Score=65.83  Aligned_cols=69  Identities=19%  Similarity=0.179  Sum_probs=49.2

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCccccc--ccCCCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHW--DAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~--~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      |.+ .+++.|+++    |+.  +.+...+++.+++++++||+|+|.......  ......++.++.|+|||||.++.+
T Consensus        68 D~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1           68 DMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             ESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             ChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            556 366666654    554  566777788999999999999997432222  122346889999999999999854

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=96.87  E-value=0.00046  Score=62.53  Aligned_cols=68  Identities=21%  Similarity=0.260  Sum_probs=50.3

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCC-CC-CCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQK-LT-FPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~-LP-fpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.++.+++.|+++    |++  +.+...++.. +| +.+++||+|++...    ..+...++.++.|+|||||+|++..
T Consensus       101 vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          101 IERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA----KAQSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             EECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence            37889999998875    553  5666666644 56 66899999997532    2223468999999999999998853

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.86  E-value=0.00025  Score=70.26  Aligned_cols=46  Identities=24%  Similarity=0.343  Sum_probs=36.5

Q ss_pred             CCCCCCCCccEEEeCCcccccccCCCc--------------------------------------hhhhhcccccCCeEE
Q 017983           32 KLTFPDDAYDLIHCARCRVHWDAQGGK--------------------------------------PLLELNRILRPGGFF   73 (363)
Q Consensus        32 ~LPfpd~sFD~v~cs~~~~~~~~~~~~--------------------------------------~l~E~~RVLrPGG~~   73 (363)
                      .-.||++|||+||++.|+ ||..+...                                      +|+...|+|||||.|
T Consensus       143 ~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~m  221 (374)
T 3b5i_A          143 RRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAM  221 (374)
T ss_dssp             SCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             cccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            356999999999999877 88654322                                      356679999999999


Q ss_pred             EEEeC
Q 017983           74 IWSAT   78 (363)
Q Consensus        74 ~~s~~   78 (363)
                      +++..
T Consensus       222 vl~~~  226 (374)
T 3b5i_A          222 FLVCL  226 (374)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99854

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.86  E-value=0.0012  Score=64.16  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=57.0

Q ss_pred             CCCHHHHHHHHHcC------C---CceeeecccCC-C-CCCCCCccEEEeCCcccccc--cC--CCchhhhhcccccCCe
Q 017983            7 DEHEAQIQFALERG------I---PAILSVIGTQK-L-TFPDDAYDLIHCARCRVHWD--AQ--GGKPLLELNRILRPGG   71 (363)
Q Consensus         7 D~~~~qvq~A~erg------~---p~~~~~~~~~~-L-Pfpd~sFD~v~cs~~~~~~~--~~--~~~~l~E~~RVLrPGG   71 (363)
                      |+++.+++.|+++-      +   .+.+...++.. + .+++++||+|++... .++.  .+  ...++.++.|+|||||
T Consensus       151 Dis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG  229 (334)
T 1xj5_A          151 EIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSS-DPIGPAKELFEKPFFQSVARALRPGG  229 (334)
T ss_dssp             ESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEE
T ss_pred             ECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCC-CccCcchhhhHHHHHHHHHHhcCCCc
Confidence            78899999998752      2   25566666544 3 356789999998543 2222  11  2468999999999999


Q ss_pred             EEEEEeCCCCCCChhhHHHHHHHHHH
Q 017983           72 FFIWSATPVYRHDDRHRSVWNAMVNL   97 (363)
Q Consensus        72 ~~~~s~~~~~~~~~e~~~~~~~~~~l   97 (363)
                      .|++.....+..........+.+..+
T Consensus       230 ~lv~~~~~~~~~~~~~~~~~~~l~~~  255 (334)
T 1xj5_A          230 VVCTQAESLWLHMDIIEDIVSNCREI  255 (334)
T ss_dssp             EEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred             EEEEecCCccccHHHHHHHHHHHHHh
Confidence            99997543332222223334444444

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.82  E-value=0.0012  Score=65.05  Aligned_cols=48  Identities=21%  Similarity=0.268  Sum_probs=36.9

Q ss_pred             cCCCCCCCCCccEEEeCCcccccccCCCch---------------------------------hhhhcccccCCeEEEEE
Q 017983           30 TQKLTFPDDAYDLIHCARCRVHWDAQGGKP---------------------------------LLELNRILRPGGFFIWS   76 (363)
Q Consensus        30 ~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~---------------------------------l~E~~RVLrPGG~~~~s   76 (363)
                      -..-.||++|||+||++.++ ||..+....                                 |+-..|.|+|||.++++
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            35578999999999999776 896543222                                 44449999999999998


Q ss_pred             eC
Q 017983           77 AT   78 (363)
Q Consensus        77 ~~   78 (363)
                      ..
T Consensus       209 ~~  210 (359)
T 1m6e_X          209 IL  210 (359)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.80  E-value=0.00064  Score=61.12  Aligned_cols=68  Identities=15%  Similarity=0.155  Sum_probs=51.0

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCC-CCCC--CCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQK-LTFP--DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~-LPfp--d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.++.+++.|+++    |+.  +.+...++.. +|+.  +++||+|++.....    +...++.++.|+|||||+++++
T Consensus        84 vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~----~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A           84 IERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKG----QYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS----CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECCCHH----HHHHHHHHHHHHcCCCeEEEEE
Confidence            37889999999887    653  5556666554 4554  68999999864432    2347899999999999999997


Q ss_pred             e
Q 017983           77 A   77 (363)
Q Consensus        77 ~   77 (363)
                      .
T Consensus       160 ~  160 (233)
T 2gpy_A          160 N  160 (233)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.79  E-value=0.0012  Score=71.34  Aligned_cols=107  Identities=11%  Similarity=-0.019  Sum_probs=64.4

Q ss_pred             CceEEEecccccHHHHHhhcCC--CeEEEEeecCCc-chHHHHHh----------cCce--eeeccccccCCCCC-CCcc
Q 017983          221 VRNVMDMNASYGGFAAALIDQP--LWVMNVVPIDAP-DTLSIIFD----------RGLI--GMYHDWCESFNTYP-RTYD  284 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~--v~v~~v~~~d~s-~~L~~a~~----------Rgl~--~~~~d~~e~~lpfp-~sFD  284 (363)
                      ..+|||.|||+|+|+.+++.+-  .....+.+.|.. .++..|..          .|..  .+.++......+.+ ..||
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD  401 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS  401 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence            4689999999999999887642  101236677877 67777722          1221  22222221112345 8899


Q ss_pred             eeeecccccc-cc------------------------ccCC-HHHHHHHHhHhccCCeEEEEEcCHHHH
Q 017983          285 LLHSSFLLSD-VT------------------------QRCD-IADVAVEMDRILRPGGYVLVQDTLEMI  327 (363)
Q Consensus       285 lVh~~~~l~~-~~------------------------~~~~-~~~~L~Em~RVLRPGG~lii~D~~~~~  327 (363)
                      +|+++==+.. ..                        ...+ ...++..+.+.|||||++++--....+
T Consensus       402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~L  470 (878)
T 3s1s_A          402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYL  470 (878)
T ss_dssp             EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHH
T ss_pred             EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHh
Confidence            9999622210 00                        0001 234678899999999998887655544

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.76  E-value=0.0012  Score=63.48  Aligned_cols=72  Identities=14%  Similarity=0.005  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHHcC------C---CceeeecccCC-CCCCCCCccEEEeCCcccccccCC----CchhhhhcccccCCe
Q 017983            6 KDEHEAQIQFALERG------I---PAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQG----GKPLLELNRILRPGG   71 (363)
Q Consensus         6 ~D~~~~qvq~A~erg------~---p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~----~~~l~E~~RVLrPGG   71 (363)
                      -|+++..++.|+++-      .   .+.+...++.. |+.++++||+|++... .|+....    ..++.++.|+|||||
T Consensus       138 vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG  216 (314)
T 2b2c_A          138 CEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSS-DPVGPAESLFGQSYYELLRDALKEDG  216 (314)
T ss_dssp             ECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC--------------HHHHHHHHEEEEE
T ss_pred             EECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCe
Confidence            378999999999862      1   24555555543 5557889999998542 3332211    478999999999999


Q ss_pred             EEEEEeC
Q 017983           72 FFIWSAT   78 (363)
Q Consensus        72 ~~~~s~~   78 (363)
                      .+++...
T Consensus       217 ~lv~~~~  223 (314)
T 2b2c_A          217 ILSSQGE  223 (314)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999864

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.75  E-value=0.0011  Score=67.50  Aligned_cols=76  Identities=18%  Similarity=0.336  Sum_probs=54.1

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCC-CCCCCccEEEe----CCc-cc--------ccccC--------CCch
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLT-FPDDAYDLIHC----ARC-RV--------HWDAQ--------GGKP   59 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LP-fpd~sFD~v~c----s~~-~~--------~~~~~--------~~~~   59 (363)
                      .|+++.+++.|+++    |+.+.+...++..++ +.+++||+|++    |-. .+        .|..+        ...+
T Consensus       132 vDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~i  211 (464)
T 3m6w_A          132 NEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKAL  211 (464)
T ss_dssp             ECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHH
Confidence            58999999888765    777666777777776 56789999995    321 11        11110        0357


Q ss_pred             hhhhcccccCCeEEEEEeCCCC
Q 017983           60 LLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        60 l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      |.++.|+|||||+|++|+-.+.
T Consensus       212 L~~a~~~LkpGG~LvysTCs~~  233 (464)
T 3m6w_A          212 LAQASRLLGPGGVLVYSTCTFA  233 (464)
T ss_dssp             HHHHHTTEEEEEEEEEEESCCC
T ss_pred             HHHHHHhcCCCcEEEEEeccCc
Confidence            8899999999999999976544

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.75  E-value=0.00036  Score=63.63  Aligned_cols=71  Identities=11%  Similarity=0.197  Sum_probs=45.1

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCC---CCC---CCCccEEEeCCcccccc--------------cCCCch
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKL---TFP---DDAYDLIHCARCRVHWD--------------AQGGKP   59 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~L---Pfp---d~sFD~v~cs~~~~~~~--------------~~~~~~   59 (363)
                      -|+++.+++.|+++    |+.  +.+...++..+   +++   +++||+|+|..-.++..              .....+
T Consensus        95 vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l  174 (254)
T 2h00_A           95 TEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVN  174 (254)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-----------------------
T ss_pred             EECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHH
Confidence            37899999999876    554  56666666552   666   37999999975443322              011245


Q ss_pred             hhhhcccccCCeEEEEE
Q 017983           60 LLELNRILRPGGFFIWS   76 (363)
Q Consensus        60 l~E~~RVLrPGG~~~~s   76 (363)
                      +.++.|+|||||.+.+.
T Consensus       175 ~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          175 TGGITEIMAEGGELEFV  191 (254)
T ss_dssp             --CTTTTHHHHTHHHHH
T ss_pred             hhhHHHHEecCCEEEEE
Confidence            78999999999988664

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.74  E-value=0.00068  Score=67.37  Aligned_cols=48  Identities=21%  Similarity=0.401  Sum_probs=36.5

Q ss_pred             cCCCCCCCCCccEEEeCCcccccccCCCchhh-----------------------hh----------------cccccCC
Q 017983           30 TQKLTFPDDAYDLIHCARCRVHWDAQGGKPLL-----------------------EL----------------NRILRPG   70 (363)
Q Consensus        30 ~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~-----------------------E~----------------~RVLrPG   70 (363)
                      -..-.||++|||+||++.|+ ||..+....|.                       |+                .|+|+||
T Consensus       140 Fy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pG  218 (384)
T 2efj_A          140 FYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISR  218 (384)
T ss_dssp             TTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             hhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            35578999999999999777 89655433333                       23                7999999


Q ss_pred             eEEEEEeC
Q 017983           71 GFFIWSAT   78 (363)
Q Consensus        71 G~~~~s~~   78 (363)
                      |.++++..
T Consensus       219 G~mvl~~~  226 (384)
T 2efj_A          219 GRMLLTFI  226 (384)
T ss_dssp             EEEEEEEE
T ss_pred             CeEEEEEe
Confidence            99999855

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=96.66  E-value=0.00064  Score=60.09  Aligned_cols=66  Identities=20%  Similarity=0.179  Sum_probs=48.0

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCC-CCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      |.++.+++.|+++    |+.  +.+...++.. +|+.++ ||+|++...    ..+...++.++.|+|||||++++..
T Consensus        88 D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A           88 DPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD----VFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             ESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             ECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence            7889999988865    543  4555556543 476667 999998632    1223478999999999999999864

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=96.66  E-value=0.01  Score=57.36  Aligned_cols=115  Identities=13%  Similarity=0.052  Sum_probs=72.7

Q ss_pred             HHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeCCCCC-
Q 017983           10 EAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSATPVYR-   82 (363)
Q Consensus        10 ~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~~~~~-   82 (363)
                      +..++.|+++    +.+ +.+...|....|+|+  +|+++++.++|+|+++. ..+|+++.|+|+|||++++....+.. 
T Consensus       212 p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~--~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~  289 (353)
T 4a6d_A          212 PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPE--ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED  289 (353)
T ss_dssp             HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCC--CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTT
T ss_pred             HHHHHHHHHhhhhcccCceeeecCccccCCCCC--ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCC
Confidence            4567777765    222 444445555556664  69999999999998743 46899999999999999998654321 


Q ss_pred             -CChhhHHH---------------HHHHHHHHhhcceEEEEEecCCCceeEEEEecCCCC
Q 017983           83 -HDDRHRSV---------------WNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSY  126 (363)
Q Consensus        83 -~~~e~~~~---------------~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~~  126 (363)
                       ..+.....               ..+.+.|.+.-.|+.+.-..-...-.+.+=+|.+.+
T Consensus       290 ~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArKgt~~  349 (353)
T 4a6d_A          290 RRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARKGTHH  349 (353)
T ss_dssp             SCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEECCCC-
T ss_pred             CCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEecCcc
Confidence             12221111               235677888888887764422112245556666553

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.65  E-value=0.0035  Score=60.14  Aligned_cols=101  Identities=19%  Similarity=0.257  Sum_probs=63.8

Q ss_pred             CCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCcchHHHHHhc------Cc-----eeeeccccccCCCCC-CCcce
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDR------GL-----IGMYHDWCESFNTYP-RTYDL  285 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s~~L~~a~~R------gl-----~~~~~d~~e~~lpfp-~sFDl  285 (363)
                      .+.++||=+|-|.|+.+++++++ ++.-+.++-+|. ..++++++-      |.     +.++.+.+-.++--. ++||+
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~-~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDA-GVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCH-HHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCH-HHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            34689999999999999999986 344333444442 355554332      21     333333344455545 99999


Q ss_pred             eeeccccccccccCC--HHHHHHHHhHhccCCeEEEEE
Q 017983          286 LHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       286 Vh~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |+.... ........  -..++..+.|.|+|||.++..
T Consensus       161 Ii~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          161 IISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             EEESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            997632 21111111  146899999999999999985

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=96.65  E-value=0.00043  Score=66.76  Aligned_cols=67  Identities=13%  Similarity=0.066  Sum_probs=48.6

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccC---CeEEEEEeC
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRP---GGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrP---GG~~~~s~~   78 (363)
                      |. ..+++.|.+.. .+.+...+... |+|  +||+|+++.+++||.+.. ..+|+++.|+|||   ||++++...
T Consensus       224 D~-~~~~~~a~~~~-~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          224 DQ-PQVVGNLTGNE-NLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             EC-HHHHSSCCCCS-SEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             cc-HHHHhhcccCC-CcEEEeCccCC-CCC--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            55 45555554421 14455555655 777  499999999999997521 2799999999999   999999755

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.63  E-value=0.0022  Score=60.12  Aligned_cols=71  Identities=14%  Similarity=0.210  Sum_probs=50.8

Q ss_pred             CCCHHHHHHHHHc------CC--C-ceeeecccCC-CCCCCCCccEEEeCCcccccccC----CCchhhhhcccccCCeE
Q 017983            7 DEHEAQIQFALER------GI--P-AILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQ----GGKPLLELNRILRPGGF   72 (363)
Q Consensus         7 D~~~~qvq~A~er------g~--p-~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~----~~~~l~E~~RVLrPGG~   72 (363)
                      |+++..++.|++.      +.  + +.+...++.. |+..+++||+|++.... ++...    ...++.++.|+|||||.
T Consensus       106 Eid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~  184 (275)
T 1iy9_A          106 DIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTE-PVGPAVNLFTKGFYAGIAKALKEDGI  184 (275)
T ss_dssp             ESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEE
T ss_pred             ECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcE
Confidence            7889999999875      22  2 4555666543 56667899999996432 33211    14689999999999999


Q ss_pred             EEEEeC
Q 017983           73 FIWSAT   78 (363)
Q Consensus        73 ~~~s~~   78 (363)
                      |++...
T Consensus       185 lv~~~~  190 (275)
T 1iy9_A          185 FVAQTD  190 (275)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999854

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=96.61  E-value=0.0038  Score=58.23  Aligned_cols=91  Identities=12%  Similarity=0.108  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      -|.++.+++.|++.    |++ +.+...++..+|+ +++||+|++....     +...++.++.|+|||||.++++..+.
T Consensus       149 vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~-----~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          149 IEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH-----KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             EECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS-----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc-----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            37888888888764    554 5566667776665 6899999987433     34579999999999999999986632


Q ss_pred             CCCChhhHHHHHHHHHHHhhcceE
Q 017983           81 YRHDDRHRSVWNAMVNLTESMCWK  104 (363)
Q Consensus        81 ~~~~~e~~~~~~~~~~l~~~~cw~  104 (363)
                      .....+  ...+.++.+.+.+.++
T Consensus       223 ~~~~~~--~~~~~~~~~~~~~~~~  244 (272)
T 3a27_A          223 EKIMYE--RPIERLKFYAEKNGYK  244 (272)
T ss_dssp             GGGTTT--HHHHHHHHHHHHTTEE
T ss_pred             cccccc--cHHHHHHHHHHHhCCe
Confidence            211111  2234455555555443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.59  E-value=0.0018  Score=61.35  Aligned_cols=71  Identities=11%  Similarity=0.006  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHHcC---------CCceeeecccCC-CCCCCCCccEEEeCCccccccc-----CCCchhhhhcccccCCe
Q 017983            7 DEHEAQIQFALERG---------IPAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDA-----QGGKPLLELNRILRPGG   71 (363)
Q Consensus         7 D~~~~qvq~A~erg---------~p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~-----~~~~~l~E~~RVLrPGG   71 (363)
                      |+++..++.|+++-         -.+.+...++.. ++..+++||+|++... .+|..     ....++.++.|+|||||
T Consensus       121 Did~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG  199 (296)
T 1inl_A          121 EVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDST-DPTAGQGGHLFTEEFYQACYDALKEDG  199 (296)
T ss_dssp             ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEE
T ss_pred             ECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCC-CcccCchhhhhHHHHHHHHHHhcCCCc
Confidence            78899999998752         124555556443 5666789999998432 23211     11468999999999999


Q ss_pred             EEEEEeC
Q 017983           72 FFIWSAT   78 (363)
Q Consensus        72 ~~~~s~~   78 (363)
                      .|++...
T Consensus       200 ~lv~~~~  206 (296)
T 1inl_A          200 VFSAETE  206 (296)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcc
Confidence            9999854

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=96.56  E-value=0.00023  Score=65.17  Aligned_cols=68  Identities=18%  Similarity=0.129  Sum_probs=46.9

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCC---CCCCCC-CccEEEeCCcccccccCCCchhhhhcc-cccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQK---LTFPDD-AYDLIHCARCRVHWDAQGGKPLLELNR-ILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~---LPfpd~-sFD~v~cs~~~~~~~~~~~~~l~E~~R-VLrPGG~~~~s~~   78 (363)
                      |.++.+++.|+..+-.+.+...++..   ||+.++ +||+|++...  |  .+...+|.|+.| +|||||+|++...
T Consensus       116 D~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          116 DRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA--H--ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             ESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS--C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             eCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            55566666665333346666667766   476554 7999998543  2  234568999998 9999999999753

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.55  E-value=0.0018  Score=61.79  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=49.0

Q ss_pred             CCCHHHHHHHHHc------C---CCceeeecccCC-CCCCCCCccEEEeCCccccccc----CCCchhhhhcccccCCeE
Q 017983            7 DEHEAQIQFALER------G---IPAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDA----QGGKPLLELNRILRPGGF   72 (363)
Q Consensus         7 D~~~~qvq~A~er------g---~p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~----~~~~~l~E~~RVLrPGG~   72 (363)
                      |+++.+++.|+++      |   -.+.+...++.. |+..+++||+|++... .|+..    ....++.++.|+|||||.
T Consensus       126 Did~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~  204 (304)
T 2o07_A          126 EIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSS-DPMGPAESLFKESYYQLMKTALKEDGV  204 (304)
T ss_dssp             ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC------------CHHHHHHHHHEEEEEE
T ss_pred             ECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECCC-CCCCcchhhhHHHHHHHHHhccCCCeE
Confidence            7889999999875      1   124555666544 6667899999998532 23221    124689999999999999


Q ss_pred             EEEEeC
Q 017983           73 FIWSAT   78 (363)
Q Consensus        73 ~~~s~~   78 (363)
                      |++...
T Consensus       205 lv~~~~  210 (304)
T 2o07_A          205 LCCQGE  210 (304)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999763

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.55  E-value=0.0084  Score=57.07  Aligned_cols=84  Identities=14%  Similarity=0.182  Sum_probs=56.7

Q ss_pred             eeeeccccccCCC-CC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC---HHHHHHHHHHHHhCCce
Q 017983          266 IGMYHDWCESFNT-YP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT---LEMINKLKPVLHSLQWS  340 (363)
Q Consensus       266 ~~~~~d~~e~~lp-fp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~---~~~~~~i~~l~~~l~W~  340 (363)
                      +..+..++...+| ++ .+||+||...-.  +.   .....|..+.+.|+|||.+++-|-   ......+.++.+...++
T Consensus       191 I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~---~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~~~~i~  265 (282)
T 2wk1_A          191 VRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YE---STWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRAKFDIA  265 (282)
T ss_dssp             EEEEESCHHHHSTTCCCCCEEEEEECCCS--HH---HHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHHHTTCC
T ss_pred             eEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cc---cHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCc
Confidence            3344444444455 55 899999987532  11   134688999999999998887764   33456677777777777


Q ss_pred             eeee--cceEEEEEec
Q 017983          341 TNIY--HDQFLVGKKG  354 (363)
Q Consensus       341 ~~~~--~~~~li~~K~  354 (363)
                      ..+.  +...++|+|.
T Consensus       266 ~~i~~~~~~~v~~rk~  281 (282)
T 2wk1_A          266 DELITIDRDGVYWQRT  281 (282)
T ss_dssp             SCCEECSSSCEEEECC
T ss_pred             eEEEEecCEEEEEEeC
Confidence            6554  6677888885

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.51  E-value=0.0034  Score=63.87  Aligned_cols=77  Identities=17%  Similarity=0.318  Sum_probs=54.4

Q ss_pred             cCCCCHHHHHHHHHc----CCC-ceeeecccCCCCC-CCCCccEEEe----CC-ccc--------ccccC--------CC
Q 017983            5 PKDEHEAQIQFALER----GIP-AILSVIGTQKLTF-PDDAYDLIHC----AR-CRV--------HWDAQ--------GG   57 (363)
Q Consensus         5 p~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPf-pd~sFD~v~c----s~-~~~--------~~~~~--------~~   57 (363)
                      -.|+++..++.|+++    |++ +.+.+.++..+++ .+++||+|+|    |- ..+        +|..+        ..
T Consensus       147 avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~  226 (479)
T 2frx_A          147 ANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQR  226 (479)
T ss_dssp             EECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHH
Confidence            358999999888776    775 5566777877764 6789999997    21 111        12110        12


Q ss_pred             chhhhhcccccCCeEEEEEeCCCC
Q 017983           58 KPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        58 ~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      .+|.++.|+|||||+|++|+-.+.
T Consensus       227 ~iL~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          227 ELIDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             HHHHHHHHHEEEEEEEEEEESCCS
T ss_pred             HHHHHHHHhcCCCCEEEEecccCC
Confidence            478999999999999999977554

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.46  E-value=0.0014  Score=61.81  Aligned_cols=71  Identities=14%  Similarity=0.134  Sum_probs=49.8

Q ss_pred             CCCHHHHHHHHHcC---------CCceeeecccCC-CCCCCCCccEEEeCCcccccccCC----CchhhhhcccccCCeE
Q 017983            7 DEHEAQIQFALERG---------IPAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQG----GKPLLELNRILRPGGF   72 (363)
Q Consensus         7 D~~~~qvq~A~erg---------~p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~~----~~~l~E~~RVLrPGG~   72 (363)
                      |+++..++.|+++-         -.+.+...++.. ++..+++||+|++... .++....    ..++.++.|+|||||.
T Consensus       109 Did~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~  187 (283)
T 2i7c_A          109 EIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGY  187 (283)
T ss_dssp             ESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECC-CTTTGGGGGSSHHHHHHHHHHEEEEEE
T ss_pred             ECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcCC-CCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence            78899999998872         124555556443 4444789999998432 2332111    3689999999999999


Q ss_pred             EEEEeC
Q 017983           73 FIWSAT   78 (363)
Q Consensus        73 ~~~s~~   78 (363)
                      |++...
T Consensus       188 lv~~~~  193 (283)
T 2i7c_A          188 CVAQCE  193 (283)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999865

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.45  E-value=0.00045  Score=61.48  Aligned_cols=69  Identities=25%  Similarity=0.198  Sum_probs=48.9

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeeccc-CCCCC-C----CCCccEEEeCCcccccccCCCchhhhhcccccCCeEE
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGT-QKLTF-P----DDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFF   73 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~-~~LPf-p----d~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~   73 (363)
                      -|.++.+++.|+++    |+.  +.+...++ +.+|. +    .++||+|++...    ..+...++.++.|+|||||++
T Consensus        95 vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~----~~~~~~~l~~~~~~L~pgG~l  170 (225)
T 3tr6_A           95 CDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD----KANTDLYYEESLKLLREGGLI  170 (225)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC----HHHHHHHHHHHHHhcCCCcEE
Confidence            37889999888876    654  55556565 33332 2    289999997532    222346899999999999999


Q ss_pred             EEEeC
Q 017983           74 IWSAT   78 (363)
Q Consensus        74 ~~s~~   78 (363)
                      ++...
T Consensus       171 v~~~~  175 (225)
T 3tr6_A          171 AVDNV  175 (225)
T ss_dssp             EEECS
T ss_pred             EEeCC
Confidence            99754

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=96.43  E-value=0.0012  Score=57.53  Aligned_cols=43  Identities=14%  Similarity=0.105  Sum_probs=32.4

Q ss_pred             CCCCCccEEEeCCccccccc----CC-------CchhhhhcccccCCeEEEEEeC
Q 017983           35 FPDDAYDLIHCARCRVHWDA----QG-------GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        35 fpd~sFD~v~cs~~~~~~~~----~~-------~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |++++||+|+|..+. ||..    +.       ..++.++.|+|||||.|++...
T Consensus       102 ~~~~~fD~v~~~~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (201)
T 2plw_A          102 LQDKKIDIILSDAAV-PCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY  155 (201)
T ss_dssp             HTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCcccEEEeCCCc-CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence            788999999997654 3321    11       1378999999999999999764

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=96.42  E-value=0.0012  Score=63.07  Aligned_cols=70  Identities=16%  Similarity=0.156  Sum_probs=50.4

Q ss_pred             CCCHHHHHHHHHcC----------CCceeeecccCC-CCCCCCCccEEEeCCccccc---cc--C--CCchhhhhccccc
Q 017983            7 DEHEAQIQFALERG----------IPAILSVIGTQK-LTFPDDAYDLIHCARCRVHW---DA--Q--GGKPLLELNRILR   68 (363)
Q Consensus         7 D~~~~qvq~A~erg----------~p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~---~~--~--~~~~l~E~~RVLr   68 (363)
                      |+++..++.|+++-          -.+.+...++.. ++..+++||+|++.... |+   ..  .  ...++.++.|+||
T Consensus       108 Did~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~-~~~~~~~~~~l~~~~~l~~~~~~Lk  186 (314)
T 1uir_A          108 DIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTD-PVGEDNPARLLYTVEFYRLVKAHLN  186 (314)
T ss_dssp             ESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCC-CBSTTCGGGGGSSHHHHHHHHHTEE
T ss_pred             ECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEECCCC-cccccCcchhccHHHHHHHHHHhcC
Confidence            78899999998751          124556666544 56678999999996433 44   11  0  1368999999999


Q ss_pred             CCeEEEEEe
Q 017983           69 PGGFFIWSA   77 (363)
Q Consensus        69 PGG~~~~s~   77 (363)
                      |||.|++..
T Consensus       187 pgG~lv~~~  195 (314)
T 1uir_A          187 PGGVMGMQT  195 (314)
T ss_dssp             EEEEEEEEE
T ss_pred             CCcEEEEEc
Confidence            999999974

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.39  E-value=0.0014  Score=61.13  Aligned_cols=77  Identities=12%  Similarity=0.100  Sum_probs=54.1

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCC----CCCCccEEEeCC-ccc----c----c--------ccCCCch
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTF----PDDAYDLIHCAR-CRV----H----W--------DAQGGKP   59 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPf----pd~sFD~v~cs~-~~~----~----~--------~~~~~~~   59 (363)
                      -|.++.+++.|+++    |++ +.+...++..++.    ++++||+|+|.- |.-    +    |        ......+
T Consensus       114 vD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~  193 (274)
T 3ajd_A          114 VEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKEL  193 (274)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHH
T ss_pred             ECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHH
Confidence            48899999888776    664 5666677777665    478999999741 210    0    1        1222468


Q ss_pred             hhhhcccccCCeEEEEEeCCCCC
Q 017983           60 LLELNRILRPGGFFIWSATPVYR   82 (363)
Q Consensus        60 l~E~~RVLrPGG~~~~s~~~~~~   82 (363)
                      |.++.|+|||||++++++.....
T Consensus       194 l~~~~~~LkpgG~lv~stcs~~~  216 (274)
T 3ajd_A          194 IDIGIDLLKKDGELVYSTCSMEV  216 (274)
T ss_dssp             HHHHHHHEEEEEEEEEEESCCCT
T ss_pred             HHHHHHhCCCCCEEEEEECCCCh
Confidence            99999999999999999875543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.31  E-value=0.0058  Score=63.19  Aligned_cols=106  Identities=8%  Similarity=-0.080  Sum_probs=61.8

Q ss_pred             CCceEEEecccccHHHHHhhcCC--CeEEEEeecCCc-chHHHHHh----cCc----eeeecccccc-CCC-CC-CCcce
Q 017983          220 SVRNVMDMNASYGGFAAALIDQP--LWVMNVVPIDAP-DTLSIIFD----RGL----IGMYHDWCES-FNT-YP-RTYDL  285 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~--v~v~~v~~~d~s-~~L~~a~~----Rgl----~~~~~d~~e~-~lp-fp-~sFDl  285 (363)
                      ...+|||.+||+|+|...+.++-  ....++.+.+.. .+..+|.-    +|+    ..+.+...-. ..| ++ ..||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            45699999999999987765530  001246777777 56666543    343    1233221111 113 45 88999


Q ss_pred             eeeccccc-c------------------ccccCC-HHHHHHHHhHhcc-CCeEEEEEcCHH
Q 017983          286 LHSSFLLS-D------------------VTQRCD-IADVAVEMDRILR-PGGYVLVQDTLE  325 (363)
Q Consensus       286 Vh~~~~l~-~------------------~~~~~~-~~~~L~Em~RVLR-PGG~lii~D~~~  325 (363)
                      |+++==|. .                  ++...+ --.++..+.+.|| |||++++--...
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            99861111 0                  110111 1247899999999 999987664443

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.31  E-value=0.0015  Score=58.99  Aligned_cols=67  Identities=21%  Similarity=0.263  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCC-CC--------------CCC--CCccEEEeCCcccccccCCCchhhhh
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQK-LT--------------FPD--DAYDLIHCARCRVHWDAQGGKPLLEL   63 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~-LP--------------fpd--~sFD~v~cs~~~~~~~~~~~~~l~E~   63 (363)
                      |.++.+++.|+++    |+.  +.+...++.. +|              |++  ++||+|++.....+    ...++.++
T Consensus        92 D~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~----~~~~l~~~  167 (239)
T 2hnk_A           92 DVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN----YPNYYPLI  167 (239)
T ss_dssp             ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG----HHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH----HHHHHHHH
Confidence            7788999988876    554  4444544322 22              565  89999998754332    23689999


Q ss_pred             cccccCCeEEEEEe
Q 017983           64 NRILRPGGFFIWSA   77 (363)
Q Consensus        64 ~RVLrPGG~~~~s~   77 (363)
                      .++|||||++++..
T Consensus       168 ~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          168 LKLLKPGGLLIADN  181 (239)
T ss_dssp             HHHEEEEEEEEEEC
T ss_pred             HHHcCCCeEEEEEc
Confidence            99999999999975

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.31  E-value=0.0011  Score=67.56  Aligned_cols=69  Identities=13%  Similarity=0.150  Sum_probs=51.4

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEe
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      |.++ +++.|+++    |+.  +.+...+.+.++++ +.||+|+|.....|+... ....+.++.|+|||||+++++.
T Consensus       188 D~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          188 EAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             ECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            6777 77777765    653  66677778888887 589999997666666432 2357789999999999999753

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.30  E-value=0.0075  Score=59.30  Aligned_cols=102  Identities=19%  Similarity=0.224  Sum_probs=59.7

Q ss_pred             CCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHH---HHHhc-Cc--------eeee-ccccccCCCCC-CC
Q 017983          218 WSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLS---IIFDR-GL--------IGMY-HDWCESFNTYP-RT  282 (363)
Q Consensus       218 ~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~---~a~~R-gl--------~~~~-~d~~e~~lpfp-~s  282 (363)
                      +.+..+||||+||.|+=+..|+...- ...|++.|.+ .-+.   ...+| |.        +.+. +| +....++. ++
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D-~~~~~~~~~~~  223 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWD-GRKWGELEGDT  223 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCC-GGGHHHHSTTC
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCc-hhhcchhcccc
Confidence            33456999999999998888877542 2357788877 3333   22222 11        1122 22 11111234 89


Q ss_pred             cceeee----cc----cccccc------ccC---CH----HHHHHHHhHhccCCeEEEEE
Q 017983          283 YDLLHS----SF----LLSDVT------QRC---DI----ADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       283 FDlVh~----~~----~l~~~~------~~~---~~----~~~L~Em~RVLRPGG~lii~  321 (363)
                      ||.|.+    +.    ++..-+      ...   .+    .++|....+.|||||+++.+
T Consensus       224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYs  283 (359)
T 4fzv_A          224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS  283 (359)
T ss_dssp             EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            999985    32    111100      000   01    35778888999999999998

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=96.28  E-value=0.0038  Score=58.90  Aligned_cols=52  Identities=15%  Similarity=0.080  Sum_probs=37.5

Q ss_pred             ceee--ecccCCCCCCCCCccEEEeCCcccccccC----CC---chhhhhcccccCCe--EEEEEeC
Q 017983           23 AILS--VIGTQKLTFPDDAYDLIHCARCRVHWDAQ----GG---KPLLELNRILRPGG--FFIWSAT   78 (363)
Q Consensus        23 ~~~~--~~~~~~LPfpd~sFD~v~cs~~~~~~~~~----~~---~~l~E~~RVLrPGG--~~~~s~~   78 (363)
                      +.+.  +.++..||  +++||+|+|..+  ++..+    ..   .+|.++.|+|||||  .|++...
T Consensus       132 v~~~~~~~D~~~l~--~~~fD~Vvsd~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~  194 (276)
T 2wa2_A          132 LITFKSKVDVTKME--PFQADTVLCDIG--ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL  194 (276)
T ss_dssp             GEEEECSCCGGGCC--CCCCSEEEECCC--CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             eEEEeccCcHhhCC--CCCcCEEEECCC--cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence            4555  66777766  789999999765  22211    11   37899999999999  9998754

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.26  E-value=0.0021  Score=62.28  Aligned_cols=71  Identities=15%  Similarity=0.156  Sum_probs=50.9

Q ss_pred             CCCHHHHHHHHHc-CC----CceeeecccCCC--CCCCCCccEEEeCCcccccc-c---CCCchhhhhcccccCCeEEEE
Q 017983            7 DEHEAQIQFALER-GI----PAILSVIGTQKL--TFPDDAYDLIHCARCRVHWD-A---QGGKPLLELNRILRPGGFFIW   75 (363)
Q Consensus         7 D~~~~qvq~A~er-g~----p~~~~~~~~~~L--Pfpd~sFD~v~cs~~~~~~~-~---~~~~~l~E~~RVLrPGG~~~~   75 (363)
                      |+++..++.|+++ +.    .+.+...++...  .+++++||+|++.... ++. .   ....++.++.|+|||||.|++
T Consensus       120 Eidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~-~~~~~~~L~t~efl~~~~r~LkpgGvlv~  198 (317)
T 3gjy_A          120 ELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA-GAITPQNFTTVEFFEHCHRGLAPGGLYVA  198 (317)
T ss_dssp             ESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST-TSCCCGGGSBHHHHHHHHHHEEEEEEEEE
T ss_pred             ECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            7899999999987 32    255666665443  4678999999985322 221 1   113689999999999999998


Q ss_pred             EeC
Q 017983           76 SAT   78 (363)
Q Consensus        76 s~~   78 (363)
                      ...
T Consensus       199 ~~~  201 (317)
T 3gjy_A          199 NCG  201 (317)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            754

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.26  E-value=0.0043  Score=58.14  Aligned_cols=52  Identities=15%  Similarity=0.110  Sum_probs=37.3

Q ss_pred             ceee--ecccCCCCCCCCCccEEEeCCcccccccC----CC---chhhhhcccccCCe--EEEEEeC
Q 017983           23 AILS--VIGTQKLTFPDDAYDLIHCARCRVHWDAQ----GG---KPLLELNRILRPGG--FFIWSAT   78 (363)
Q Consensus        23 ~~~~--~~~~~~LPfpd~sFD~v~cs~~~~~~~~~----~~---~~l~E~~RVLrPGG--~~~~s~~   78 (363)
                      +.+.  +.++..||  +++||+|+|..+  +...+    ..   .+|.++.|+|||||  .|++...
T Consensus       124 v~~~~~~~D~~~l~--~~~fD~V~sd~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~  186 (265)
T 2oxt_A          124 IVKFKSRVDIHTLP--VERTDVIMCDVG--ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL  186 (265)
T ss_dssp             GEEEECSCCTTTSC--CCCCSEEEECCC--CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             eEEEecccCHhHCC--CCCCcEEEEeCc--ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence            4445  66677765  789999999755  22211    11   27899999999999  9999764

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.25  E-value=0.0022  Score=61.63  Aligned_cols=71  Identities=14%  Similarity=0.140  Sum_probs=49.8

Q ss_pred             CCCHHHHHHHHHcCC---------CceeeecccCC-CCCCCCCccEEEeCCcccccccC----CCchhhhhcccccCCeE
Q 017983            7 DEHEAQIQFALERGI---------PAILSVIGTQK-LTFPDDAYDLIHCARCRVHWDAQ----GGKPLLELNRILRPGGF   72 (363)
Q Consensus         7 D~~~~qvq~A~erg~---------p~~~~~~~~~~-LPfpd~sFD~v~cs~~~~~~~~~----~~~~l~E~~RVLrPGG~   72 (363)
                      |+++..++.|+++--         .+.+...++.. ++..+++||+|++... .++...    ...++.++.|+|||||.
T Consensus       147 Dis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~  225 (321)
T 2pt6_A          147 EIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGY  225 (321)
T ss_dssp             ESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEE
T ss_pred             ECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcE
Confidence            789999999988621         24455555433 4556789999998532 233211    14689999999999999


Q ss_pred             EEEEeC
Q 017983           73 FIWSAT   78 (363)
Q Consensus        73 ~~~s~~   78 (363)
                      +++...
T Consensus       226 lv~~~~  231 (321)
T 2pt6_A          226 CVAQCE  231 (321)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            999754

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=96.22  E-value=0.0039  Score=58.31  Aligned_cols=63  Identities=21%  Similarity=0.180  Sum_probs=45.2

Q ss_pred             CCCHHHHHHHHHcC---------CCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            7 DEHEAQIQFALERG---------IPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         7 D~~~~qvq~A~erg---------~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      |+++..++.|+++-         -.+.+...++...+   ++||+|++..      .++..++.++.|+|||||.|++..
T Consensus       101 eid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~------~dp~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          101 QADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ------EPDIHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             CSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS------CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC------CChHHHHHHHHHhcCCCcEEEEEc
Confidence            77888888887641         12444555555443   8999999862      134458999999999999999974


Q ss_pred             C
Q 017983           78 T   78 (363)
Q Consensus        78 ~   78 (363)
                      .
T Consensus       172 ~  172 (262)
T 2cmg_A          172 K  172 (262)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=96.19  E-value=0.0049  Score=58.93  Aligned_cols=45  Identities=16%  Similarity=0.187  Sum_probs=32.0

Q ss_pred             CCCCCCccEEEeCCccc--ccccCCC---chhhhhcccccCCeEEEEEeC
Q 017983           34 TFPDDAYDLIHCARCRV--HWDAQGG---KPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        34 Pfpd~sFD~v~cs~~~~--~~~~~~~---~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      .+++++||+|+|..+..  +|..+..   .+|.++.|+|||||.|++...
T Consensus       143 ~l~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~  192 (305)
T 2p41_A          143 FIPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL  192 (305)
T ss_dssp             TSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             cCCcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            34567999999965432  2221111   478999999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.7
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.68
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.67
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.65
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.62
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.59
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.58
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.57
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.56
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.54
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.53
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.52
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.52
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.52
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.5
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.49
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.49
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.47
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.46
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.45
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.44
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.39
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.39
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.38
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.37
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.36
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.34
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.29
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.29
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.27
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.26
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.25
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.23
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.19
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.19
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.17
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.13
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.13
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.12
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.1
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.07
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.06
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.05
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.04
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.03
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.94
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.93
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.93
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.92
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.91
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.91
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.87
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.86
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.85
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.81
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.76
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.67
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.59
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.58
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.57
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.53
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.52
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.52
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.5
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.47
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.42
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.41
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.38
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.33
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.31
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.29
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.29
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.27
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.25
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.22
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.21
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.16
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.16
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.16
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.13
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.1
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.05
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.01
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.01
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.0
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.87
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.86
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.85
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.85
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.85
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.84
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.79
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.77
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.76
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.74
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.72
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.71
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.71
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.7
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.7
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.66
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.65
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.59
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.59
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.53
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.49
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	97.47
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.47
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.45
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.45
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.43
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.4
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.39
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.36
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.32
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.32
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.3
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.02
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.87
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.86
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.85
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.84
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	96.76
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	96.69
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.67
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	96.62
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.53
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.48
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.47
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.46
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.42
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.33
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.29
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.27
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	96.02
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.92
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.53
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.45
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	95.45
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.14
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	95.08
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	95.04
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	94.67
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.64
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.5
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	94.46
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.69
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.54
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	93.43
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.21
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	92.75
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	92.63
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	92.38
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	92.26
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.96
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	91.93
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	91.87
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	91.85
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	91.39
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	90.42
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.42
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	89.77
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	89.43
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	88.8
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.16
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	86.3
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	86.16
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	85.67
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	85.22
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	84.93
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	84.46
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	83.64
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	83.49
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	82.59
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	82.46
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	81.56
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	81.11

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.70  E-value=9.6e-18  Score=149.99  Aligned_cols=103  Identities=20%  Similarity=0.247  Sum_probs=81.8

Q ss_pred             hhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CC
Q 017983          211 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RT  282 (363)
Q Consensus       211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~s  282 (363)
                      ++..+++++  .+|||+|||+|.++..|++.+..   |+++|.+ +|++.|.++    |.  +..+...++ .+||+ ++
T Consensus         8 l~~~~l~~~--~rVLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~-~l~~~~~~   81 (231)
T d1vl5a_           8 MQIAALKGN--EEVLDVATGGGHVANAFAPFVKK---VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE-QMPFTDER   81 (231)
T ss_dssp             HHHHTCCSC--CEEEEETCTTCHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTC
T ss_pred             HHhcCCCCc--CEEEEecccCcHHHHHHHHhCCE---EEEEECCHHHHhhhhhcccccccccccccccccc-cccccccc
Confidence            334455543  59999999999999999988654   6788888 899888665    32  334444444 48999 99


Q ss_pred             cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ||+|+|..+++|+++   ++.+|.|+.|+|||||+++|.+
T Consensus        82 fD~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          82 FHIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccccCC---HHHHHHHHHHhcCCCcEEEEEe
Confidence            999999999999864   6789999999999999999975

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=2.7e-17  Score=148.66  Aligned_cols=100  Identities=19%  Similarity=0.351  Sum_probs=81.2

Q ss_pred             cccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-CCcce
Q 017983          214 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDL  285 (363)
Q Consensus       214 l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-~sFDl  285 (363)
                      ..++++  .+|||+|||+|.++..|++++.   +|+++|.| +|+++|.++    |+  +..+...++. +||+ ++||+
T Consensus        12 ~~~~~~--~rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~   85 (234)
T d1xxla_          12 AECRAE--HRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES-LPFPDDSFDI   85 (234)
T ss_dssp             HTCCTT--CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB-CCSCTTCEEE
T ss_pred             hCCCCC--CEEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhccccccccccccccccc-ccccccccce
Confidence            345554  5999999999999999998754   57888988 899887665    22  3344444454 8999 99999


Q ss_pred             eeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          286 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       286 Vh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |+|..+++|+++   +..+|.|+.|+|||||++++.+
T Consensus        86 v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          86 ITCRYAAHHFSD---VRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             EEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeeceeecccC---HHHHHHHHHHeeCCCcEEEEEE
Confidence            999999999864   6889999999999999999975

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=6.1e-17  Score=145.00  Aligned_cols=96  Identities=20%  Similarity=0.339  Sum_probs=79.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeec-cccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSS-FLLSDVTQ  297 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~-~~l~~~~~  297 (363)
                      ..+|||+|||+|.++..|++.+.   .|+++|.+ .|++.|.+++....+...++ .+||+ ++||+|+|. .+++|+++
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~-~l~~~~~~fD~ii~~~~~~~~~~d  118 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAE-DLPFPSGAFEAVLALGDVLSYVEN  118 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTT-SCCSCTTCEEEEEECSSHHHHCSC
T ss_pred             CCEEEEECCCCchhcccccccce---EEEEeeccccccccccccccccccccccc-ccccccccccceeeecchhhhhhh
Confidence            35899999999999999998865   46788888 89999999987433332333 48999 999999985 68888864


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                         .+.+|.|+.|+|||||.++++..
T Consensus       119 ---~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         119 ---KDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             ---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---HHHHHHHHHhhcCcCcEEEEEEC
Confidence               57899999999999999999854

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=6.2e-17  Score=143.16  Aligned_cols=97  Identities=21%  Similarity=0.283  Sum_probs=79.0

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c-eeeeccccccCCCCC-CCcceeeecccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-IGMYHDWCESFNTYP-RTYDLLHSSFLLSD  294 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~  294 (363)
                      .+|||||||+|.++..|++.+..   |+++|.| +|++.|.++.    . +..+....+ .+|++ ++||+|+|..+++|
T Consensus        39 ~~ILDiGcG~G~~~~~la~~~~~---v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~-~l~~~~~~fD~I~~~~~l~~  114 (226)
T d1ve3a1          39 GKVLDLACGVGGFSFLLEDYGFE---VVGVDISEDMIRKAREYAKSRESNVEFIVGDAR-KLSFEDKTFDYVIFIDSIVH  114 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTT-SCCSCTTCEEEEEEESCGGG
T ss_pred             CEEEEECCCcchhhhhHhhhhcc---cccccccccchhhhhhhhccccccccccccccc-cccccCcCceEEEEecchhh
Confidence            48999999999999999998754   6788988 8998887762    2 222332233 48999 99999999999999


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +++. ++..+|.|+.|+|||||+++|.+.
T Consensus       115 ~~~~-d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         115 FEPL-ELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             CCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CChh-HHHHHHHHHHHHcCcCcEEEEEEc
Confidence            8643 578899999999999999998864

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.62  E-value=4.3e-16  Score=144.76  Aligned_cols=95  Identities=21%  Similarity=0.247  Sum_probs=77.0

Q ss_pred             CceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      ..+|||+|||+|.++..|+++ +.   .|+++|.+ .|++.|.++    |+   +.++...++ .+||+ ++||+|+|..
T Consensus        68 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~-~l~~~~~sfD~V~~~~  143 (282)
T d2o57a1          68 QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIPCEDNSYDFIWSQD  143 (282)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCSSCTTCEEEEEEES
T ss_pred             CCEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhcccccccccccccccccccc-cccccccccchhhccc
Confidence            459999999999999999875 43   46788888 788877765    33   334433333 48999 9999999999


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +|+|+++   +..+|.|+.|+|||||++++.+
T Consensus       144 ~l~h~~d---~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         144 AFLHSPD---KLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             CGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhccC---HHHHHHHHHHhcCCCcEEEEEE
Confidence            9999874   5789999999999999999985

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=9.1e-16  Score=135.45  Aligned_cols=89  Identities=20%  Similarity=0.246  Sum_probs=74.7

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeeccccccccccC
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRC  299 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~  299 (363)
                      .+|||+|||+|.++..|.+       ++++|.+ +|++.+.+|++.-... .++ .+|++ ++||+|+|..+|+|+++  
T Consensus        38 ~~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~~~~~~-d~~-~l~~~~~~fD~I~~~~~l~h~~d--  106 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGVFVLKG-TAE-NLPLKDESFDFALMVTTICFVDD--  106 (208)
T ss_dssp             SCEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTCEEEEC-BTT-BCCSCTTCEEEEEEESCGGGSSC--
T ss_pred             CeEEEECCCCcccccccce-------EEEEeCChhhcccccccccccccc-ccc-ccccccccccccccccccccccc--
Confidence            3899999999999998864       2466888 8999999998643333 344 48998 99999999999999964  


Q ss_pred             CHHHHHHHHhHhccCCeEEEEEc
Q 017983          300 DIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       300 ~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                       +..+|.|+.|+|||||+++|.+
T Consensus       107 -~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_         107 -PERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             -HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -cccchhhhhhcCCCCceEEEEe
Confidence             6889999999999999999986

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.58  E-value=1.2e-15  Score=136.97  Aligned_cols=102  Identities=14%  Similarity=0.131  Sum_probs=79.2

Q ss_pred             CceEEEecccccHHHHHhhcCC-CeEEEEeecCCc-chHHHHHhc----CceeeeccccccCCCCC-CCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~-v~v~~v~~~d~s-~~L~~a~~R----gl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|..+..|++.. -...+|+++|.| +|++.|.++    +....++-.+...++++ ..||+|+|..+++
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~  119 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ  119 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence            3589999999999998887631 112357889999 999999876    22222332234567888 9999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      |++ ..+...+|+||+|+|||||.+++.|.
T Consensus       120 ~~~-~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_         120 FLP-PEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             GSC-GGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccC-hhhHHHHHHHHHHhCCCCceeecccc
Confidence            875 34678999999999999999999863

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.8e-15  Score=137.62  Aligned_cols=101  Identities=15%  Similarity=0.158  Sum_probs=77.6

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCCCCc
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTY  283 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sF  283 (363)
                      .++++++  .+|||+|||+|.++..|++. ++.   |+++|.+ .|++.+.++    |+   +...+...+. ++.+++|
T Consensus        28 ~~~l~pg--~~VLDiGCG~G~~~~~la~~~~~~---v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~-~~~~~~f  101 (245)
T d1nkva_          28 VLRMKPG--TRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-YVANEKC  101 (245)
T ss_dssp             HTCCCTT--CEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-CCCSSCE
T ss_pred             HcCCCCC--CEEEEEcCCCCHHHHHHHHhcCCE---EEEEecccchhhHHHHHHHHhhccccchhhhhHHhh-ccccCce
Confidence            3556655  59999999999999999874 544   5677888 899887776    54   3333332232 4333999


Q ss_pred             ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |+|+|..+++|+++   +..+|.|+.|+|||||+++|.+
T Consensus       102 D~v~~~~~~~~~~d---~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         102 DVAACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             EEEEEESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEE
T ss_pred             eEEEEEehhhccCC---HHHHHHHHHHHcCcCcEEEEEe
Confidence            99999999999875   4789999999999999999986

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.2e-15  Score=134.13  Aligned_cols=120  Identities=17%  Similarity=0.223  Sum_probs=91.5

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------eeeeccccccCCCCC-CCcceeeeccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ...+|||+|||+|.++..|+.+...  .|+++|.+ +|++.|.++..      +..+....+. ++++ ++||+|+|..+
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~-~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD-FTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGG-CCCCSSCEEEEEEESC
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccccc-cccccccccccccccc
Confidence            4568999999999999998765432  46788988 89999988742      2233333333 7787 99999999999


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEEcCH---------------HHHHHHHHHHHhCCceeee
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL---------------EMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~---------------~~~~~i~~l~~~l~W~~~~  343 (363)
                      ++|+++. ++..+|.++.|+|||||++++.|..               ...+.++++.+.-.++..-
T Consensus       137 l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~  202 (222)
T d2ex4a1         137 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA  202 (222)
T ss_dssp             GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred             cccchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence            9999764 3568999999999999999998531               1356788888777776543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=3.9e-15  Score=134.32  Aligned_cols=98  Identities=18%  Similarity=0.260  Sum_probs=76.7

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c-eeeeccccccCCCCCCCcceeeec-ccc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-IGMYHDWCESFNTYPRTYDLLHSS-FLL  292 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l-~~~~~d~~e~~lpfp~sFDlVh~~-~~l  292 (363)
                      +..+|||+|||+|.++..|++.+.   +|+++|.+ +|++.|.++.    + +.......+ .++++++||+|+|. .++
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~-~l~~~~~fD~I~~~~~~~  116 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVL-EIAFKNEFDAVTMFFSTI  116 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGG-GCCCCSCEEEEEECSSGG
T ss_pred             CCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhh-hcccccccchHhhhhhhh
Confidence            456899999999999999999875   47788988 8999888763    2 223332233 37888999999997 467


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +|+. ..+...+|.++.|+|||||+++|..
T Consensus       117 ~~~~-~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         117 MYFD-EEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcCC-hHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            7764 3457789999999999999999864

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.53  E-value=6.7e-15  Score=132.39  Aligned_cols=95  Identities=19%  Similarity=0.291  Sum_probs=75.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc--eeeeccccccCCCCCCCcceeeeccccccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl--~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~  297 (363)
                      ..+|||+|||+|.++..|++.+..   |+++|.+ +|++.|.++..  +..++...+. ++++++||+|+|..+|+|+.+
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g~~---v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~vleh~~d   96 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKDGITYIHSRFED-AQLPRRYDNIVLTHVLEHIDD   96 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSCSCEEEEESCGGG-CCCSSCEEEEEEESCGGGCSS
T ss_pred             CCcEEEEeCCCcHHHHHHHHcCCe---EEEEeCcHHHhhhhhcccccccccccccccc-cccccccccccccceeEecCC
Confidence            358999999999999999987644   6777888 89999988743  3333332332 455699999999999999864


Q ss_pred             cCCHHHHHHHHh-HhccCCeEEEEEc
Q 017983          298 RCDIADVAVEMD-RILRPGGYVLVQD  322 (363)
Q Consensus       298 ~~~~~~~L~Em~-RVLRPGG~lii~D  322 (363)
                         ...+|.|+. |+|||||+++|..
T Consensus        97 ---~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          97 ---PVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             ---HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ---HHHHHHHHHHHhcCCCceEEEEe
Confidence               578999997 8999999999973

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.52  E-value=8e-15  Score=132.90  Aligned_cols=97  Identities=16%  Similarity=0.214  Sum_probs=77.2

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCCCCcceeeec-cccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYPRTYDLLHSS-FLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp~sFDlVh~~-~~l~  293 (363)
                      .++|||+|||+|.++..|++.+.   .|+++|.| +||+.|.+|    |+ +..+..... .++++++||+|+|. .+++
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~-~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GCCCSCCEEEEEECTTGGG
T ss_pred             CCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchh-hhcccccccccceeeeeee
Confidence            46899999999999999999875   46788999 899998876    32 333332222 24556999999986 5788


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |+.+..++..+|.++.|.|||||.+++.
T Consensus       114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         114 YIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             GCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            8877777889999999999999999974

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.52  E-value=2.6e-15  Score=129.14  Aligned_cols=107  Identities=9%  Similarity=-0.010  Sum_probs=79.9

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc------------------eeeec
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------------------IGMYH  270 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl------------------~~~~~  270 (363)
                      |+..|.+.++  .+|||+|||+|..+.+|++++..   |+++|.| +|++.|.++.-                  ...+.
T Consensus        12 ~~~~l~~~~~--~rvLd~GCG~G~~a~~la~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (201)
T d1pjza_          12 YWSSLNVVPG--ARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   86 (201)
T ss_dssp             HHHHHCCCTT--CEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHHHcCCCCC--CEEEEecCcCCHHHHHHHHcCCc---eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence            5555665554  59999999999999999998754   6788888 89999988631                  01111


Q ss_pred             cccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          271 DWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       271 d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      .......+++ .+||+|+++.+++|+.. .+...++.+|.|+|||||++++..
T Consensus        87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          87 GDFFALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             ECCSSSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccccccccccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEEE
Confidence            1112212345 89999999999999864 346789999999999999988763

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.52  E-value=7.5e-15  Score=137.06  Aligned_cols=101  Identities=14%  Similarity=0.124  Sum_probs=77.1

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCCCCcceeeecccc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYPRTYDLLHSSFLL  292 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp~sFDlVh~~~~l  292 (363)
                      .+..+|||+|||+|.++..|++.--....|+++|.+ .|++.|.++    ++ +.......+ .+|++++||+|+|..+|
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~-~~~~~~~fD~v~~~~~l  104 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EIELNDKYDIAICHAFL  104 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTT-TCCCSSCEEEEEEESCG
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccc-cccccCCceEEEEehhh
Confidence            345799999999999999998741111246778888 899888766    22 222332233 47778889999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +|+++   +..+|.++.|+|||||++++.|.
T Consensus       105 ~~~~d---~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         105 LHMTT---PETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             GGCSS---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hcCCC---HHHHHHHHHHHcCcCcEEEEEEC
Confidence            99875   57899999999999999999864

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=2.4e-14  Score=134.46  Aligned_cols=107  Identities=11%  Similarity=0.148  Sum_probs=79.4

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----CceeeeccccccCCCCCCCc
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYPRTY  283 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl~~~~~d~~e~~lpfp~sF  283 (363)
                      .++.+++++|  .+|||+|||.|+++.+++++ ++   .|++++.| ++++.|.+|    |+...+.........++++|
T Consensus        44 ~~~~l~l~~g--~~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f  118 (280)
T d2fk8a1          44 NLDKLDLKPG--MTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV  118 (280)
T ss_dssp             HHTTSCCCTT--CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred             HHHHcCCCCC--CEEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence            4556667665  59999999999999999875 54   46777888 788776665    44211111111123356999


Q ss_pred             ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |.|++..+|+|+.+. +...+++++.|+|||||.++|.+
T Consensus       119 D~i~si~~~eh~~~~-~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         119 DRIVSIEAFEHFGHE-NYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             SEEEEESCGGGTCGG-GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhhHhhHHHHhhhh-hHHHHHHHHHhccCCCceEEEEE
Confidence            999999999999754 57889999999999999999864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.49  E-value=1.2e-14  Score=134.04  Aligned_cols=120  Identities=16%  Similarity=0.175  Sum_probs=89.0

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC-CCcceeeecccc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ....+|||+|||+|.++..|+.+...  .|+++|.+ .|++.|.++.    .+..+....+ .++++ ++||+|+|..+|
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~I~~~~vl  168 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASME-TATLPPNTYDLIVIQWTA  168 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGG-GCCCCSSCEEEEEEESCG
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEcccc-ccccCCCccceEEeeccc
Confidence            34579999999999999988764322  46777888 8999998763    2333333233 36787 999999999999


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEEEcCHH----------------HHHHHHHHHHhCCceee
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE----------------MINKLKPVLHSLQWSTN  342 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~----------------~~~~i~~l~~~l~W~~~  342 (363)
                      +|+++. ++..+|.++.|+|||||+++|.|...                ....++++.+.-.+++.
T Consensus       169 ~hl~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii  233 (254)
T d1xtpa_         169 IYLTDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV  233 (254)
T ss_dssp             GGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred             cccchh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEE
Confidence            999764 46789999999999999999976311                13566777766556543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.49  E-value=9.4e-15  Score=133.59  Aligned_cols=100  Identities=16%  Similarity=0.172  Sum_probs=75.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-------eeeeccccccCCCC-C-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-------IGMYHDWCESFNTY-P-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-------~~~~~d~~e~~lpf-p-~sFDlVh~~~  290 (363)
                      ..+|||||||+|+.+..+++.+..  .|+++|.| +|++.|.+|..       +..+...+. ..++ + ++||+|+|.+
T Consensus        25 ~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~-~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          25 GDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-GRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT-TSCCCCSSCEEEEEEES
T ss_pred             cCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchh-hhcccccccceEEEEcc
Confidence            359999999999998888876543  46788998 89999987632       222332232 2444 3 8999999999


Q ss_pred             ccccccc-cCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          291 LLSDVTQ-RCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       291 ~l~~~~~-~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +++|+.+ ..++..+|.++.|+|||||+++++..
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            9999743 34567899999999999999998743

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.47  E-value=3.6e-14  Score=124.99  Aligned_cols=95  Identities=21%  Similarity=0.312  Sum_probs=74.7

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--e-eeeccccccCCCCCCCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--I-GMYHDWCESFNTYPRTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~-~~~~d~~e~~lpfp~sFDlVh~~~~l~  293 (363)
                      .+|||+|||+|.++.+|++++..   |+++|.+ .|++.+.++    |+  + ....|.  ..++++++||+|+|..+|+
T Consensus        32 grvLDiGcG~G~~~~~la~~g~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYLAANGYD---VTAWDKNPASMANLERIKAAEGLDNLQTDLVDL--NTLTFDGEYDFILSTVVMM  106 (198)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT--TTCCCCCCEEEEEEESCGG
T ss_pred             CcEEEECCCCCHHHHHHHHHhhh---hccccCcHHHHHHHHHHhhhccccchhhhheec--ccccccccccEEEEeeeee
Confidence            38999999999999999998754   6778888 788866543    33  2 223332  2356669999999999999


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |++. .....+|.++.|+|||||++++..
T Consensus       107 ~~~~-~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         107 FLEA-QTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             GSCT-THHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCH-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            9864 356789999999999999999974

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=2.2e-14  Score=133.05  Aligned_cols=93  Identities=16%  Similarity=0.276  Sum_probs=71.8

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCC-CCcceeeeccccccc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDV  295 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~  295 (363)
                      .+..+|||+|||+|.++..|++.... ..++++|.+ .|++.|.++.. +......++ .+||+ ++||+|++.++++| 
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~-  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RLPFSDTSMDAIIRIYAPCK-  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHHCTTSEEEECCTT-SCSBCTTCEEEEEEESCCCC-
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCC-CEEEEecchHhhhhhhhcccccccceeeehh-hccCCCCCEEEEeecCCHHH-
Confidence            34579999999999999999886311 136778888 89999988764 333332233 58999 99999999877664 


Q ss_pred             cccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          296 TQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       296 ~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                               +.|+.|||||||++++...
T Consensus       160 ---------~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         160 ---------AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             ---------HHHHHHHEEEEEEEEEEEE
T ss_pred             ---------HHHHHHHhCCCcEEEEEee
Confidence                     5799999999999999853

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.6e-14  Score=126.57  Aligned_cols=120  Identities=8%  Similarity=0.047  Sum_probs=86.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----e---------------------------
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----I---------------------------  266 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~---------------------------  266 (363)
                      +..+|||+|||+|.++..++..+.  ..|+++|.| +|++.|.++-.     .                           
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            356899999999999887776653  368899999 89988876521     0                           


Q ss_pred             -----eeec--cccccCCCCC-CCcceeeecccccccccc-CCHHHHHHHHhHhccCCeEEEEEcCHH------------
Q 017983          267 -----GMYH--DWCESFNTYP-RTYDLLHSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQDTLE------------  325 (363)
Q Consensus       267 -----~~~~--d~~e~~lpfp-~sFDlVh~~~~l~~~~~~-~~~~~~L~Em~RVLRPGG~lii~D~~~------------  325 (363)
                           ....  .......|++ ++||+|++.++++|+... .++..++.+|.|+|||||++++.+...            
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~  208 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS  208 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence                 0000  0011234678 999999999999998532 356789999999999999999986311            


Q ss_pred             ----HHHHHHHHHHhCCcee
Q 017983          326 ----MINKLKPVLHSLQWST  341 (363)
Q Consensus       326 ----~~~~i~~l~~~l~W~~  341 (363)
                          ..+.++++.+.-.+++
T Consensus       209 ~~~~~~~~~~~~l~~aGf~v  228 (257)
T d2a14a1         209 CVALEKGEVEQAVLDAGFDI  228 (257)
T ss_dssp             CCCCCHHHHHHHHHHTTEEE
T ss_pred             ccCCCHHHHHHHHHHCCCEE
Confidence                2567778887766653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=1e-13  Score=131.01  Aligned_cols=107  Identities=7%  Similarity=-0.019  Sum_probs=78.5

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhc----CceeeeccccccCCCCC-CC
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYP-RT  282 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~R----gl~~~~~d~~e~~lpfp-~s  282 (363)
                      .++.+++++|  .+|||+|||.|+++.++++ .++.   |++++.| ++++.+.++    |+...+..... ..+++ ++
T Consensus        53 ~~~~l~l~~G--~~VLDiGCG~G~~~~~~a~~~g~~---v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~-d~~~~~~~  126 (291)
T d1kpia_          53 ALDKLNLEPG--MTLLDIGCGWGSTMRHAVAEYDVN---VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-GWEEFDEP  126 (291)
T ss_dssp             HHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHSCCSSCEEEEEC-CGGGCCCC
T ss_pred             HHHhcCCCCC--CEEEEecCcchHHHHHHHHhcCcc---eeeccchHHHHHHHHHHHHhhccchhhhhhhh-cccccccc
Confidence            4556777765  4999999999999999986 4654   5666777 666655444    55322211111 24455 99


Q ss_pred             cceeeecccccccccc------CCHHHHHHHHhHhccCCeEEEEEc
Q 017983          283 YDLLHSSFLLSDVTQR------CDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       283 FDlVh~~~~l~~~~~~------~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ||.|++-.+|+|+.+.      .+...++++++|+|||||.+++.+
T Consensus       127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            9999999999999763      346789999999999999999864

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.4e-13  Score=128.36  Aligned_cols=99  Identities=14%  Similarity=0.267  Sum_probs=74.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc----e-----eee--cccc--ccCCCCCCCccee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----I-----GMY--HDWC--ESFNTYPRTYDLL  286 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl----~-----~~~--~d~~--e~~lpfp~sFDlV  286 (363)
                      ..+|||+|||+|.++..|++.+.   +|+++|.| +||+.|.++..    .     ..+  .++-  ...+|+.++||+|
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v  133 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  133 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence            46999999999999999999874   47888999 89998876531    0     111  1111  1124555899999


Q ss_pred             eec-cccccccccC----CHHHHHHHHhHhccCCeEEEEEc
Q 017983          287 HSS-FLLSDVTQRC----DIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       287 h~~-~~l~~~~~~~----~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +|. .+|.|+++..    +...+|+|+.|+|||||+|+|..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            985 4789986532    36779999999999999999964

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.39  E-value=4.5e-13  Score=126.12  Aligned_cols=103  Identities=13%  Similarity=0.223  Sum_probs=76.8

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhc----Cce---ee-eccccccCCCC
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR----GLI---GM-YHDWCESFNTY  279 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~R----gl~---~~-~~d~~e~~lpf  279 (363)
                      .++.+++++|  .+|||||||.|+++.++++ +++.   |+++..| ++++.|.+|    |+.   .+ ..|+    ..+
T Consensus        54 ~~~~l~l~~G--~~VLDiGCG~G~~a~~~a~~~g~~---v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~----~~~  124 (285)
T d1kpga_          54 ALGKLGLQPG--MTLLDVGCGWGATMMRAVEKYDVN---VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW----EQF  124 (285)
T ss_dssp             HHTTTTCCTT--CEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG----GGC
T ss_pred             HHHHcCCCCC--CEEEEecCcchHHHHHHHhcCCcc---eEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh----hcc
Confidence            5566777765  5999999999999999887 4544   5666776 677666554    442   22 2232    223


Q ss_pred             CCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          280 PRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       280 p~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +.+||.|++..+|+|+.+. +...+++++.|+|||||.+++.+
T Consensus       125 ~~~fD~i~si~~~eh~~~~-~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         125 DEPVDRIVSIGAFEHFGHE-RYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             CCCCSEEEEESCGGGTCTT-THHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cccccceeeehhhhhcCch-hHHHHHHHHHhhcCCCCcEEEEE
Confidence            5899999999999998653 56789999999999999999854

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.2e-13  Score=123.25  Aligned_cols=97  Identities=16%  Similarity=0.175  Sum_probs=71.9

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----e-eeeccccccCCCCC-CCcceee-----
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----I-GMYHDWCESFNTYP-RTYDLLH-----  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~-~~~~d~~e~~lpfp-~sFDlVh-----  287 (363)
                      ..+|||||||+|.++.++++.+.  -+++++|.+ .|++.|.++..     + ....++.....+++ ++||.|+     
T Consensus        54 g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~  131 (229)
T d1zx0a1          54 GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  131 (229)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             CCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence            46999999999999999998653  367888998 89999987753     1 12233322234677 8888776     


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +...+.|+.+   .+.++.|+.|+|||||.|++.+
T Consensus       132 ~~~~~~~~~~---~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         132 LSEETWHTHQ---FNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             CBGGGTTTHH---HHHHHHTHHHHEEEEEEEEECC
T ss_pred             cccccccccC---HHHHHHHHHHHcCCCcEEEEEe
Confidence            4555566543   5789999999999999998854

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.37  E-value=2.4e-13  Score=124.52  Aligned_cols=100  Identities=28%  Similarity=0.559  Sum_probs=72.9

Q ss_pred             CCCCCceEEEecccccHHHHHhhcC--CCeEEEEeecCCcchHHHHHhc----Cc---eeee-ccccccCCCCCCCccee
Q 017983          217 NWSSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GL---IGMY-HDWCESFNTYPRTYDLL  286 (363)
Q Consensus       217 ~~~~~r~VLDvGCG~G~faa~L~~~--~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~-~d~~e~~lpfp~sFDlV  286 (363)
                      .....++|||||||+|.++..|+++  .+.   ++..|.+++++.+.++    |+   +..+ +|.   +-+.|.+||+|
T Consensus        77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~---~~~~~~~~D~v  150 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVS---ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADAI  150 (253)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEEE
T ss_pred             CCccCCEEEEeCCCCCHHHHHHHHhcceeE---EEEccCHHHHHHHHHHHHHhhcccchhhccccc---hhhcccchhhe
Confidence            3455689999999999999999875  233   3445655666655543    43   3333 331   23445889999


Q ss_pred             eeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          287 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       287 h~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      +++.+|+|+++. +...+|+++.|+|||||+++|.|.
T Consensus       151 ~~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         151 ILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             EEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             eeccccccCCch-hhHHHHHHHHHhcCCCcEEEEEec
Confidence            999999999754 456789999999999999999863

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8e-13  Score=121.85  Aligned_cols=98  Identities=12%  Similarity=0.223  Sum_probs=72.5

Q ss_pred             ceEEEecccccHHHHHhhcC-----CCeEEEEeecCCc-chHHHHHhcC-----c--ee-eeccc-c-----ccCCCCC-
Q 017983          222 RNVMDMNASYGGFAAALIDQ-----PLWVMNVVPIDAP-DTLSIIFDRG-----L--IG-MYHDW-C-----ESFNTYP-  280 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~-----~v~v~~v~~~d~s-~~L~~a~~Rg-----l--~~-~~~d~-~-----e~~lpfp-  280 (363)
                      -+|||+|||+|.++..|++.     +.....++++|.+ .|++.+.++-     +  +. .++.. .     ....+++ 
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            37999999999987777542     2234567888998 8999888762     1  11 11110 0     0124677 


Q ss_pred             CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          281 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       281 ~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      ++||+|+|.++|+|+++   +..+|.++.|+|||||+++|..
T Consensus       122 ~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEEE
Confidence            99999999999999864   6889999999999999998873

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.3e-13  Score=118.89  Aligned_cols=115  Identities=12%  Similarity=-0.017  Sum_probs=84.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----------------------eeee-cccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----------------------IGMY-HDWCES  275 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----------------------~~~~-~d~~e~  275 (363)
                      ..+|||+|||+|..+.+|++++..   |+++|.| .+++.++++.-                       +..+ .|. ..
T Consensus        46 ~~rvLd~GCG~G~~a~~LA~~G~~---V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~  121 (229)
T d2bzga1          46 GLRVFFPLCGKAVEMKWFADRGHS---VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI-FD  121 (229)
T ss_dssp             SCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG-GG
T ss_pred             CCEEEEeCCCCcHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch-hh
Confidence            469999999999999999998754   6888999 89988877631                       1111 221 11


Q ss_pred             CCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH------------HHHHHHHHHHhCCcee
Q 017983          276 FNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE------------MINKLKPVLHSLQWST  341 (363)
Q Consensus       276 ~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~------------~~~~i~~l~~~l~W~~  341 (363)
                      ..+++ ++||+|+...+|+|++. ...+.++.+|.|+|||||++++.....            ..++++++... .|++
T Consensus       122 l~~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i  198 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNI  198 (229)
T ss_dssp             GGGSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred             ccccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEE
Confidence            22455 99999999999999864 467899999999999999987763210            23567777654 3554

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.29  E-value=1.3e-12  Score=120.46  Aligned_cols=103  Identities=28%  Similarity=0.448  Sum_probs=74.0

Q ss_pred             CCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhc----Cc---eeeeccccccCCCCCCCcceeeec
Q 017983          217 NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSS  289 (363)
Q Consensus       217 ~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~R----gl---~~~~~d~~e~~lpfp~sFDlVh~~  289 (363)
                      +....++|||||||+|.++..|+++.- -+.++..|.+++++.+.++    |+   +.....  ..+.|.|.+||+|++.
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~--d~~~~~p~~~D~v~~~  154 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVELAGPAERARRRFADAGLADRVTVAEG--DFFKPLPVTADVVLLS  154 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEEC--CTTSCCSCCEEEEEEE
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecChHHHHHHHHHHhhcCCcceeeeeee--eccccccccchhhhcc
Confidence            345568999999999999999998521 1134556766666555433    43   222222  1234566779999999


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      ++|||+.+. ....+|+++.|+|||||+++|.|.
T Consensus       155 ~vLh~~~d~-~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         155 FVLLNWSDE-DALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             SCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccccCcH-HHHHHHHHHHhhcCCcceeEEEEe
Confidence            999999753 456789999999999999999875

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.29  E-value=9.7e-12  Score=108.71  Aligned_cols=119  Identities=18%  Similarity=0.187  Sum_probs=85.9

Q ss_pred             hccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CC
Q 017983          212 GGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RT  282 (363)
Q Consensus       212 ~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~s  282 (363)
                      ..+++.+  ..+|||+|||+|.++.+|+.....   |+++|.+ ++++.|.++    |+   +.+++..+.. .+++ .+
T Consensus        27 ~~l~~~~--g~~VLDiGcGsG~~s~~lA~~~~~---V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~-~~~~~~~  100 (186)
T d1l3ia_          27 CLAEPGK--NDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPD  100 (186)
T ss_dssp             HHHCCCT--TCEEEEESCTTSHHHHHHHTTSSE---EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCC
T ss_pred             HhcCCCC--CCEEEEEECCeEcccccccccceE---EEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh-cccccCC
Confidence            3444544  469999999999999999887543   6777888 888887765    33   3344433332 4567 99


Q ss_pred             cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhCCceee
Q 017983          283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTN  342 (363)
Q Consensus       283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~  342 (363)
                      ||+|++.....+      +++++.++.+.|||||++++... .+....+.+..+...|+..
T Consensus       101 ~D~v~~~~~~~~------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~  155 (186)
T d1l3ia_         101 IDIAVVGGSGGE------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN  155 (186)
T ss_dssp             EEEEEESCCTTC------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred             cCEEEEeCcccc------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence            999999865543      46799999999999999999864 3455566667776666544

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.27  E-value=1.1e-11  Score=108.95  Aligned_cols=114  Identities=16%  Similarity=0.226  Sum_probs=78.4

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCCC-CCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      +..+|||+|||+|.++..|++...   +|.++|.+ .+++.+.++    ++    +...+..+  +.+++ ++||+|+|+
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~--~~~~~~~~fD~Ii~~  126 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL--YENVKDRKYNKIITN  126 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST--TTTCTTSCEEEEEEC
T ss_pred             CCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcch--hhhhccCCceEEEEc
Confidence            456999999999999999988654   46777887 788777653    22    23333222  23566 999999999


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCce
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWS  340 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~  340 (363)
                      ..+++..+  ..+.++.++.|+|||||.+++.. ....-..+...++..-++
T Consensus       127 ~p~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~  176 (194)
T d1dusa_         127 PPIRAGKE--VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGN  176 (194)
T ss_dssp             CCSTTCHH--HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSC
T ss_pred             ccEEecch--hhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCc
Confidence            88876442  24678999999999999987753 222234444545544343

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=4.6e-12  Score=117.33  Aligned_cols=113  Identities=18%  Similarity=0.170  Sum_probs=82.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      ..+|||+|||+|.++.++++.+..   |+++|.+ .|++.|+++    |+ ..+++...+  .+++ ++||+|+|+...+
T Consensus       121 g~~VLDiGcGsG~l~i~aa~~g~~---V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~--~~~~~~~fD~V~ani~~~  195 (254)
T d2nxca1         121 GDKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLE--AALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCE---EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHH--HHGGGCCEEEEEEECCHH
T ss_pred             cCEEEEcccchhHHHHHHHhcCCE---EEEEECChHHHHHHHHHHHHcCCceeEEecccc--ccccccccchhhhccccc
Confidence            459999999999999999888754   6788888 788877653    33 222222111  2466 8999999975544


Q ss_pred             cccccCCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHHHHHHHhCCceeeee
Q 017983          294 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      +      +..++.++.|+|||||++++++. .+..+.+.+.++...|+....
T Consensus       196 ~------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~  241 (254)
T d2nxca1         196 L------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             H------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred             c------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEE
Confidence            3      45689999999999999999864 234567777777777775443

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.9e-12  Score=119.29  Aligned_cols=120  Identities=17%  Similarity=0.159  Sum_probs=82.5

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----e---------------------------
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----I---------------------------  266 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~---------------------------  266 (363)
                      ..++|||+|||+|.+...++...+  .+|++.|.+ +|++.+.++--     .                           
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            457999999999988765555433  258889999 89988765310     0                           


Q ss_pred             ----eee-ccccc----cCCCCC-CCcceeeecccccccc-ccCCHHHHHHHHhHhccCCeEEEEEcCHH----------
Q 017983          267 ----GMY-HDWCE----SFNTYP-RTYDLLHSSFLLSDVT-QRCDIADVAVEMDRILRPGGYVLVQDTLE----------  325 (363)
Q Consensus       267 ----~~~-~d~~e----~~lpfp-~sFDlVh~~~~l~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D~~~----------  325 (363)
                          .+. .|-..    ...+++ ++||+|+|.++++|+. +.+++..+|.++.|+|||||++++.+...          
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~  211 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR  211 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcc
Confidence                000 11101    112344 7899999999999985 44467889999999999999999975310          


Q ss_pred             ------HHHHHHHHHHhCCcee
Q 017983          326 ------MINKLKPVLHSLQWST  341 (363)
Q Consensus       326 ------~~~~i~~l~~~l~W~~  341 (363)
                            ..+.|+++...-..++
T Consensus       212 ~~~~~~t~e~v~~~l~~aGf~v  233 (263)
T d2g72a1         212 LTVVPVSEEEVREALVRSGYKV  233 (263)
T ss_dssp             EECCCCCHHHHHHHHHHTTEEE
T ss_pred             cccCCCCHHHHHHHHHHCCCeE
Confidence                  2466777776665554

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.23  E-value=3.3e-12  Score=116.55  Aligned_cols=122  Identities=15%  Similarity=0.131  Sum_probs=83.4

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccccCCCCC-CCcce
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDL  285 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e~~lpfp-~sFDl  285 (363)
                      .+.+++|  .+|||+|||+|.++..|++..-. ..|.++|.+ .|++.+.++    .. ..+..+. ....+|. .+||+
T Consensus        69 ~l~ikpG--~~VLDlGcGsG~~~~~la~~~~~-g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~-~~~~~~~~~~~~v  144 (230)
T d1g8sa_          69 VMPIKRD--SKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDA-NKPQEYANIVEKV  144 (230)
T ss_dssp             CCCCCTT--CEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT-TCGGGGTTTCCCE
T ss_pred             hCCCCCC--CEEEEeCEEcCHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhhhcccceEEEee-ccCccccccccee
Confidence            4445554  59999999999999999974211 247888998 888877765    22 3344443 3334566 88888


Q ss_pred             eeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC----------HHHHHHHHHHHHhCCcee
Q 017983          286 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------LEMINKLKPVLHSLQWST  341 (363)
Q Consensus       286 Vh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------~~~~~~i~~l~~~l~W~~  341 (363)
                      +++...++|..   +.+.++.|+.|+|||||+++|.+.          ....+++.+.++.-..+.
T Consensus       145 ~~i~~~~~~~~---~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~i  207 (230)
T d1g8sa_         145 DVIYEDVAQPN---QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKI  207 (230)
T ss_dssp             EEEEECCCSTT---HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEE
T ss_pred             EEeeccccchH---HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEE
Confidence            87776676653   457799999999999999999742          123445555554444443

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.19  E-value=5.2e-11  Score=106.79  Aligned_cols=102  Identities=11%  Similarity=-0.010  Sum_probs=65.7

Q ss_pred             cccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----CceeeeccccccCCCCC-CCcceee
Q 017983          214 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       214 l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      +.+++|  .+|||+|||+|+++..|++.-... .|.++|.+ .|++.+.++    +.+..+...+. ..+.+ ..+|.+.
T Consensus        52 l~lkpg--~~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~-~~~~~~~~~~~vd  127 (209)
T d1nt2a_          52 LKLRGD--ERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRERNNIIPLLFDAS-KPWKYSGIVEKVD  127 (209)
T ss_dssp             CCCCSS--CEEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTT-CGGGTTTTCCCEE
T ss_pred             CCCCCC--CEEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhhccCCceEEEeecc-CccccccccceEE
Confidence            445554  599999999999999998742111 47888998 788766544    43333322222 12223 5555443


Q ss_pred             ec-cccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          288 SS-FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       288 ~~-~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +. ..+.|.   .+...++.|+.|+|||||+++|.+
T Consensus       128 ~v~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         128 LIYQDIAQK---NQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEECCCST---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEecccCh---hhHHHHHHHHHHHhccCCeEEEEE
Confidence            22 224433   345779999999999999999975

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.19  E-value=1.7e-11  Score=109.76  Aligned_cols=114  Identities=11%  Similarity=0.115  Sum_probs=78.5

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHH----HhcCc--eeeeccccccCCC--CC-CCcceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII----FDRGL--IGMYHDWCESFNT--YP-RTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a----~~Rgl--~~~~~d~~e~~lp--fp-~sFDlVh~~~~  291 (363)
                      ..|||+|||+|.++..|++..-- .+++++|.+ +++..+    .+.|+  +.+++..+.. +.  |+ ++||.|++.+.
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~-l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEESC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhh-hhcccCchhhhccccccc
Confidence            37999999999999999875311 257788887 666554    44455  3334433332 33  77 99999998877


Q ss_pred             cccccccC-----CHHHHHHHHhHhccCCeEEEE-EcCHHHHHHHHHHHHhC
Q 017983          292 LSDVTQRC-----DIADVAVEMDRILRPGGYVLV-QDTLEMINKLKPVLHSL  337 (363)
Q Consensus       292 l~~~~~~~-----~~~~~L~Em~RVLRPGG~lii-~D~~~~~~~i~~l~~~l  337 (363)
                      ..+...+.     --..+|.++.|+|||||.+.| +|...+.+.+.+.....
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~  160 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEY  160 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHC
Confidence            66433211     014799999999999999977 46677777776666543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=2.2e-11  Score=115.60  Aligned_cols=96  Identities=17%  Similarity=0.196  Sum_probs=72.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHH----HhcCc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSII----FDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a----~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..+++.++.  .|.++|.++++..+    .+.|+   +.+++...+ .+++| ++||+|++..++
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~-~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE-DVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT-TSCCSSSCEEEEEECCCB
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhCccccceEEEeehh-hccCcccceeEEEEEecc
Confidence            359999999999999988887753  25566666554444    33444   334443333 47888 999999999888


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVL  319 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~li  319 (363)
                      +++.....++.++.+++|+|||||.++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCCCeEEE
Confidence            887776778899999999999999875

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=5e-11  Score=108.51  Aligned_cols=134  Identities=13%  Similarity=0.158  Sum_probs=83.4

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-eeeeccccc-cCCCCC-CCcc
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCE-SFNTYP-RTYD  284 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~~d~~e-~~lpfp-~sFD  284 (363)
                      .+.+++|  .+|||+|||+|+++..|++.-.....|.++|.+ .|++.+.++    +. ..+..+-.. ...+.. ..+|
T Consensus        68 ~l~i~pG--~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD  145 (227)
T d1g8aa_          68 NFPIKPG--KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCCCCTT--CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             ccccCCC--CEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceE
Confidence            4556655  599999999999999998731001136677888 777766554    32 223333111 112334 7888


Q ss_pred             eeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC----------HHHHHHHHHHHHhCCceeeee--------cc
Q 017983          285 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------LEMINKLKPVLHSLQWSTNIY--------HD  346 (363)
Q Consensus       285 lVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------~~~~~~i~~l~~~l~W~~~~~--------~~  346 (363)
                      +|++.  +.|.   .....++.++.|+|||||+++|...          ..+..+++++.+. .++..-.        ++
T Consensus       146 ~i~~d--~~~~---~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~~~H  219 (227)
T d1g8aa_         146 VIFED--VAQP---TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYEKDH  219 (227)
T ss_dssp             EEEEC--CCST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTSSSE
T ss_pred             EEEEE--cccc---chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCCCce
Confidence            88765  3332   2356799999999999999999731          2345566666543 3443211        45


Q ss_pred             eEEEEEec
Q 017983          347 QFLVGKKG  354 (363)
Q Consensus       347 ~~li~~K~  354 (363)
                      -+.|++|+
T Consensus       220 ~~vv~rK~  227 (227)
T d1g8aa_         220 ALFVVRKT  227 (227)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            56777774

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.13  E-value=6.4e-11  Score=106.01  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=78.7

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCC-CC-CCcceeeecccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT-YP-RTYDLLHSSFLL  292 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lp-fp-~sFDlVh~~~~l  292 (363)
                      ..|||+|||+|.++..|+...-. .+++++|.+ +++..|.++    ++  +.+++..+...+. |+ .++|.|++.+--
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence            48999999999999999874211 246777877 667665444    44  4444443333222 67 999999976543


Q ss_pred             c-----cccccCCHHHHHHHHhHhccCCeEEEE-EcCHHHHHHHHHHHHhCCce
Q 017983          293 S-----DVTQRCDIADVAVEMDRILRPGGYVLV-QDTLEMINKLKPVLHSLQWS  340 (363)
Q Consensus       293 ~-----~~~~~~~~~~~L~Em~RVLRPGG~lii-~D~~~~~~~i~~l~~~l~W~  340 (363)
                      .     |...+---..+|.++.|+|||||.+.| +|..++.+.+.+......+.
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~  165 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMK  165 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCE
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcc
Confidence            2     211111115799999999999999987 56767766666666655554

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=1.5e-11  Score=110.50  Aligned_cols=101  Identities=15%  Similarity=0.094  Sum_probs=68.5

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c--eeeeccccccCCCCC-C
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L--IGMYHDWCESFNTYP-R  281 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l--~~~~~d~~e~~lpfp-~  281 (363)
                      .++.++++++  .+|||+|||+|.+++.|++.......|+.+|.+ ++++.|.++.    +  +...+..... .++. +
T Consensus        67 ~l~~l~l~~g--~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~-~~~~~~  143 (213)
T d1dl5a1          67 FMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY-GVPEFS  143 (213)
T ss_dssp             HHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGGGC
T ss_pred             HHHhhhcccc--ceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH-cccccc
Confidence            4555666665  599999999999999887631001135666777 7887777652    2  2222222222 3444 8


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +||+|++..+++|++         .++.|+|||||.+++-.
T Consensus       144 ~fD~I~~~~~~~~~p---------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         144 PYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEB
T ss_pred             chhhhhhhccHHHhH---------HHHHHhcCCCcEEEEEE
Confidence            999999999998764         25678999999999854

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=1.2e-10  Score=109.80  Aligned_cols=97  Identities=16%  Similarity=0.219  Sum_probs=71.0

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCcch----HHHHHhcCc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDT----LSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~----L~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..+++.+..  .|+++|.+++    .+.+...|+   +..++...+ .++++ ++||+|++..+.
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~-~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVE-EVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTT-TCCCSSSCEEEEEECCCB
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHH-HcccccceeEEEeeeeee
Confidence            358999999999999888887643  2445555522    233444454   444443333 48888 999999998887


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLV  320 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii  320 (363)
                      +++.+...++.++.+++|+|||||.++-
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            7777666789999999999999999863

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.07  E-value=7e-11  Score=105.80  Aligned_cols=71  Identities=25%  Similarity=0.489  Sum_probs=61.3

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.|+.|++.|+++    |++ +.+.+.+++.+||++++||+|+|+.+++|+. ++..+|.|+.|+|||||+++++..
T Consensus        45 D~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~~~~~~~  120 (234)
T d1xxla_          45 DATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFS-DVRKAVREVARVLKQDGRFLLVDH  120 (234)
T ss_dssp             ESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceeeccc-CHHHHHHHHHHeeCCCcEEEEEEc
Confidence            8899999998766    555 6677778999999999999999998887655 477999999999999999999754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.5e-10  Score=108.61  Aligned_cols=97  Identities=19%  Similarity=0.153  Sum_probs=70.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chH---HHHHhcCc---eeeeccccccCCCCC-CCcceeeecccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTL---SIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLL  292 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L---~~a~~Rgl---~~~~~d~~e~~lpfp-~sFDlVh~~~~l  292 (363)
                      ..+|||+|||+|.++..+++.+..  .|.++|.+ .+.   ..+.+.+.   +.+++...+ .++++ ++||+|++..+.
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~-~l~~~~~~~D~Ivse~~~  112 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIE-EVHLPVEKVDVIISEWMG  112 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT-TSCCSCSCEEEEEECCCB
T ss_pred             cCEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHH-HhcCccccceEEEEeeee
Confidence            458999999999999999887753  25566666 343   33344444   444443333 47888 999999998877


Q ss_pred             ccccccCCHHHHHHHHhHhccCCeEEEE
Q 017983          293 SDVTQRCDIADVAVEMDRILRPGGYVLV  320 (363)
Q Consensus       293 ~~~~~~~~~~~~L~Em~RVLRPGG~lii  320 (363)
                      +++.....++.++..++|+|||||+++-
T Consensus       113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         113 YFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eecccccccHHHHHHHHhcCCCCcEEec
Confidence            7766554567888889999999999874

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.05  E-value=4.1e-11  Score=106.15  Aligned_cols=71  Identities=18%  Similarity=0.332  Sum_probs=60.7

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |+|+.|++.|+++    |.+ +.+.+.+++.|||++++||+|+|..+++|+. |+..+|.|+.|+|||||+|++..+
T Consensus        44 D~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          44 DLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCHHHHhhhhhcccccccccccccccccccccccccccccccccccccccC-CHHHHHHHHHHhcCCCcEEEEEeC
Confidence            8899999998765    555 5677788999999999999999999987765 477899999999999999999754

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=7.9e-11  Score=109.58  Aligned_cols=116  Identities=16%  Similarity=0.126  Sum_probs=77.4

Q ss_pred             hhccccCCCCCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhcC------c---eeeeccccccCC
Q 017983          211 VGGLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDRG------L---IGMYHDWCESFN  277 (363)
Q Consensus       211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~Rg------l---~~~~~d~~e~~l  277 (363)
                      +..+++++|  .+|||+|||+|+++.+|+..   ...   |...|.+ ++++.|.++-      .   +...+.... ..
T Consensus        89 i~~l~i~PG--~~VLE~G~GsG~lt~~La~~vgp~G~---V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~-~~  162 (264)
T d1i9ga_          89 VHEGDIFPG--ARVLEAGAGSGALTLSLLRAVGPAGQ---VISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA-DS  162 (264)
T ss_dssp             HHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTSE---EEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG-GC
T ss_pred             HHHhCCCCC--CEEEecCcCCcHHHHHHHHhhCCCcE---EEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccc-cc
Confidence            345566665  59999999999999999863   223   5677888 8888887631      1   222222222 36


Q ss_pred             CCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC-HHH-HHHHHHHHHhCCce
Q 017983          278 TYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEM-INKLKPVLHSLQWS  340 (363)
Q Consensus       278 pfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~-~~~i~~l~~~l~W~  340 (363)
                      +|+ ++||.|++     |++++   ..++.++.|+|||||.+++... .+. ..-++.+...-.|.
T Consensus       163 ~~~~~~fDaV~l-----dlp~P---~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~  220 (264)
T d1i9ga_         163 ELPDGSVDRAVL-----DMLAP---WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  220 (264)
T ss_dssp             CCCTTCEEEEEE-----ESSCG---GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             cccCCCcceEEE-----ecCCH---HHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence            888 99999975     44543   4599999999999999988643 333 33444443344464

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=4.3e-11  Score=106.23  Aligned_cols=71  Identities=21%  Similarity=0.420  Sum_probs=61.2

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.|+.|++.|++++... +...+++.|||++++||+|+|....+||..|+..+|+|+.|+|||||.++++.+
T Consensus        71 D~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1          71 DPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             ESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecccccccccccccccc-cccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence            88999999999998655 445789999999999999999765555555677899999999999999999986

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=3.3e-10  Score=105.22  Aligned_cols=118  Identities=15%  Similarity=0.118  Sum_probs=77.4

Q ss_pred             hhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-C
Q 017983          211 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-R  281 (363)
Q Consensus       211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~  281 (363)
                      +..+++.+|  .+|||+|||+|+++.+|+..-.....|.++|.+ ++++.|.++    |+   +...+...  ...|+ .
T Consensus        96 i~~l~i~pG--~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~--~~~~~~~  171 (266)
T d1o54a_          96 AMMLDVKEG--DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI--SEGFDEK  171 (266)
T ss_dssp             HHHTTCCTT--CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG--GGCCSCC
T ss_pred             HHhhCCCCC--CEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc--ccccccc
Confidence            345667665  499999999999999998631111136677888 788877665    33   22222211  23466 7


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHHhCCce
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWS  340 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~  340 (363)
                      .||.|+     .|++++   ..+|.++.|+|||||.+++.- ..+.+.++.+.++...|.
T Consensus       172 ~~D~V~-----~d~p~p---~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~  223 (266)
T d1o54a_         172 DVDALF-----LDVPDP---WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI  223 (266)
T ss_dssp             SEEEEE-----ECCSCG---GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred             ceeeeE-----ecCCCH---HHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence            888765     455543   569999999999999998754 444555555555555664

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=1.7e-10  Score=100.95  Aligned_cols=73  Identities=29%  Similarity=0.377  Sum_probs=63.0

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|+|+.|++.|+++    +..+.....+++.|||++++||+|+|+.+++|++. +..++|+|+.|+|||||+|++..+
T Consensus        65 iD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1          65 VDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            38999999999876    56677777889999999999999999999988753 345799999999999999999865

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.93  E-value=2.4e-10  Score=105.32  Aligned_cols=72  Identities=19%  Similarity=0.230  Sum_probs=63.2

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|+|+.|++.|+++    |+.  +.+...+++.|||++++||+|+|..+++|+++ ...+|.|+.|+|||||+|+++.+
T Consensus        96 vD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d-~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1          96 LNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD-KLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             EESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccC-HHHHHHHHHHhcCCCcEEEEEEe
Confidence            48899999999876    554  56777889999999999999999999988874 67899999999999999999865

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=2.8e-10  Score=99.48  Aligned_cols=71  Identities=23%  Similarity=0.364  Sum_probs=63.4

Q ss_pred             CCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCC
Q 017983            7 DEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPV   80 (363)
Q Consensus         7 D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~   80 (363)
                      |.|+.+++.|+++++  .+.+.+++.+|+++++||+|+|+.+++|.+ ++..+|.|+.|+|||||++++..+..
T Consensus        61 D~s~~~~~~a~~~~~--~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~-d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_          61 EPSERMAEIARKRGV--FVLKGTAENLPLKDESFDFALMVTTICFVD-DPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             ESCHHHHHHHHHTTC--EEEECBTTBCCSCTTCEEEEEEESCGGGSS-CHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             eCChhhccccccccc--cccccccccccccccccccccccccccccc-ccccchhhhhhcCCCCceEEEEecCC
Confidence            789999999999964  567778999999999999999999998876 47789999999999999999998743

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.91  E-value=5.8e-10  Score=102.81  Aligned_cols=96  Identities=9%  Similarity=0.168  Sum_probs=66.8

Q ss_pred             hccccCCCCCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhc----Cc---eeee-ccccccCCCC
Q 017983          212 GGLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTY  279 (363)
Q Consensus       212 ~~l~i~~~~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~-~d~~e~~lpf  279 (363)
                      ..+++++|  .+|||+|||+|.++.+|+..   ...   |...|.+ ++++.|.++    +.   +... .|.++   .+
T Consensus        79 ~~l~i~pG--~rVLEiG~GsG~lt~~la~~v~~~g~---V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~---~~  150 (250)
T d1yb2a1          79 MRCGLRPG--MDILEVGVGSGNMSSYILYALNGKGT---LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---FI  150 (250)
T ss_dssp             --CCCCTT--CEEEEECCTTSHHHHHHHHHHTTSSE---EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---CC
T ss_pred             HHcCCCCc--CEEEEeeeeCcHHHHHHHHHhCCCcE---EEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeec---cc
Confidence            34567765  59999999999999888863   223   5677888 788888764    21   3333 33322   25


Q ss_pred             C-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          280 P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       280 p-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      + ++||+|++.     ++++   ..+|.++.|+|||||++++.-.
T Consensus       151 ~~~~fD~V~ld-----~p~p---~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         151 SDQMYDAVIAD-----IPDP---WNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             CSCCEEEEEEC-----CSCG---GGSHHHHHHTEEEEEEEEEEES
T ss_pred             ccceeeeeeec-----CCch---HHHHHHHHHhcCCCceEEEEeC
Confidence            6 999999864     3332   3589999999999999998644

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.7e-10  Score=108.45  Aligned_cols=104  Identities=7%  Similarity=0.034  Sum_probs=69.0

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc-----------C----ceeeeccc
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR-----------G----LIGMYHDW  272 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R-----------g----l~~~~~d~  272 (363)
                      .++.++++++  .+|||+|||+|.++..++.. +..  .++++|.+ .+++.|.+.           |    .+...+..
T Consensus       143 ~~~~~~l~~~--~~vlD~GcG~G~~~~~~a~~~~~~--~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         143 MIDEIKMTDD--DLFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHSCCCTT--CEEEEETCTTSHHHHHHHHHCCCS--EEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHcCCCCC--CEEEEcCCCCCHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            4445666654  49999999999988877653 332  46778887 777766543           1    13333332


Q ss_pred             cccCCCCC-CCc--ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          273 CESFNTYP-RTY--DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       273 ~e~~lpfp-~sF--DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      .. .+||. +.|  |+|+++ .+.|.+   ++...|.||.|+|||||++++.+
T Consensus       219 ~~-~~~~~~~~~~advi~~~-~~~f~~---~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         219 FL-SEEWRERIANTSVIFVN-NFAFGP---EVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             TT-SHHHHHHHHHCSEEEEC-CTTTCH---HHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cc-ccccccccCcceEEEEc-ceecch---HHHHHHHHHHHhCCCCcEEEEec
Confidence            22 25666 556  556654 444544   36789999999999999999865

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8.2e-10  Score=99.81  Aligned_cols=91  Identities=15%  Similarity=0.176  Sum_probs=61.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc-------eeeeccccccCCCCC-CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-------IGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl-------~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      ..+|||+|||+|.+++.|+........|+++|.. ++++.|.++    ++       +......+. ..+++ .+||.|+
T Consensus        77 g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~-~~~~~~~~fD~I~  155 (224)
T d1i1na_          77 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR-MGYAEEAPYDAIH  155 (224)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG-GCCGGGCCEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc-cccchhhhhhhhh
Confidence            4599999999999888777531001135666777 777766544    21       122222222 24455 8999999


Q ss_pred             eccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          288 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       288 ~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +..++++++         .++.+.|||||.+++-
T Consensus       156 ~~~~~~~ip---------~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         156 VGAAAPVVP---------QALIDQLKPGGRLILP  180 (224)
T ss_dssp             ECSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred             hhcchhhcC---------HHHHhhcCCCcEEEEE
Confidence            999988764         3577999999999985

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=7.2e-10  Score=102.09  Aligned_cols=65  Identities=26%  Similarity=0.381  Sum_probs=57.8

Q ss_pred             CCCCHHHHHHHHHcCCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALERGIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~erg~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|+|+.+++.|.++.-.+.+.+.+++.|||++++||+|+|....+        .+.|+.|||||||+|++++|
T Consensus       114 iD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~--------~~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         114 LDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC--------KAEELARVVKPGGWVITATP  178 (268)
T ss_dssp             EESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC--------CHHHHHHHEEEEEEEEEEEE
T ss_pred             ecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH--------HHHHHHHHhCCCcEEEEEee
Confidence            389999999999998778888889999999999999999865432        37899999999999999987

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.1e-09  Score=104.45  Aligned_cols=119  Identities=15%  Similarity=0.155  Sum_probs=72.0

Q ss_pred             hhccccCCCCCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHHhcC-----------------ceeee
Q 017983          211 VGGLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDRG-----------------LIGMY  269 (363)
Q Consensus       211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~Rg-----------------l~~~~  269 (363)
                      +..++|.+|.  +|||+|||+|.++.+|+..   ...   |...|.+ ++++.|.+.-                 .+...
T Consensus        91 l~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~---V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~  165 (324)
T d2b25a1          91 LSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGR---VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  165 (324)
T ss_dssp             HHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCE---EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHhCCCCCC--EEEEecccccHHHHHHHHHhCCCcE---EEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence            4456677664  9999999999999999863   223   5666877 7888776531                 12222


Q ss_pred             -ccccccCCCCC-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc-CHHHHHHHHHHHH--hCCceee
Q 017983          270 -HDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLH--SLQWSTN  342 (363)
Q Consensus       270 -~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~--~l~W~~~  342 (363)
                       .|.+.....++ .+||.|+..     ++++   ..+|.++.|+|||||.+++.- ..+.+.++-+.++  .+.|...
T Consensus       166 ~~di~~~~~~~~~~~fD~V~LD-----~p~P---~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i  235 (324)
T d2b25a1         166 HKDISGATEDIKSLTFDAVALD-----MLNP---HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE  235 (324)
T ss_dssp             ESCTTCCC-------EEEEEEC-----SSST---TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             ecchhhcccccCCCCcceEeec-----CcCH---HHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence             23332222356 899998752     3333   348999999999999998754 3443333333332  4567543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=1.6e-09  Score=97.48  Aligned_cols=71  Identities=15%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.|++.|+++    |+.  +.+...+++.+ +++++||+|+|..+++|+.+ ...+|.|+.|+|||||+++++.+
T Consensus        62 vD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~d-~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          62 IDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDVAACVGATWIAGG-FAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEEEEEESCGGGTSS-SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             EecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeEEEEEehhhccCC-HHHHHHHHHHHcCcCcEEEEEec
Confidence            38899999988877    665  56777788888 57899999999999988774 67899999999999999999865

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=1.2e-09  Score=107.23  Aligned_cols=103  Identities=8%  Similarity=0.036  Sum_probs=68.0

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCc---------------ee--eec
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL---------------IG--MYH  270 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl---------------~~--~~~  270 (363)
                      .++.++++++  .+|||+|||+|.++..++.. ++.  .++++|.+ .|++.|.++.-               ..  ...
T Consensus       208 Il~~l~Lkpg--d~fLDLGCG~G~~vl~aA~~~g~~--~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         208 VYQQCQLKKG--DTFMDLGSGVGNCVVQAALECGCA--LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHTTCCTT--CEEEEESCTTSHHHHHHHHHHCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHhCCCCC--CEEEeCCCCCcHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            4556666665  49999999999998888764 331  36778888 78888776531               00  111


Q ss_pred             cccccCCC-C--C-CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          271 DWCESFNT-Y--P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       271 d~~e~~lp-f--p-~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +...  .+ +  . ..+|+|++.. +.|.+   ++..+|.||.|+|||||+++.++
T Consensus       284 ~f~~--~~~~d~~~~~adVV~inn-~~f~~---~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         284 SFVD--NNRVAELIPQCDVILVNN-FLFDE---DLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             CSTT--CHHHHHHGGGCSEEEECC-TTCCH---HHHHHHHHHHTTCCTTCEEEESS
T ss_pred             chhh--ccccccccccceEEEEec-ccCch---HHHHHHHHHHHhcCCCcEEEEec
Confidence            1110  11 1  1 4567777653 33433   46789999999999999999876

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.67  E-value=1.4e-08  Score=91.95  Aligned_cols=95  Identities=14%  Similarity=0.143  Sum_probs=65.2

Q ss_pred             hhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC--CCc
Q 017983          211 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP--RTY  283 (363)
Q Consensus       211 ~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp--~sF  283 (363)
                      ++.+.++++  .+|||+|||+|.+++.|+.....   |+.++.. ++++.|.++.    .+.+.+...  ...++  ..|
T Consensus        63 l~~L~l~~g--~~VLdIG~GsGy~ta~La~l~~~---V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~--~~g~~~~~pf  135 (224)
T d1vbfa_          63 LDELDLHKG--QKVLEIGTGIGYYTALIAEIVDK---VVSVEINEKMYNYASKLLSYYNNIKLILGDG--TLGYEEEKPY  135 (224)
T ss_dssp             HHHTTCCTT--CEEEEECCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHHHHHTTCSSEEEEESCG--GGCCGGGCCE
T ss_pred             HHHhhhccc--ceEEEecCCCCHHHHHHHHHhcc---cccccccHHHHHHHHHHHhcccccccccCch--hhcchhhhhH
Confidence            344556654  59999999999999998876544   5566666 6666665541    133333222  23344  789


Q ss_pred             ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |.|++..++.++++         ++.+.|||||++++-
T Consensus       136 D~Iiv~~a~~~ip~---------~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         136 DRVVVWATAPTLLC---------KPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEEEESSBBSSCCH---------HHHHTEEEEEEEEEE
T ss_pred             HHHHhhcchhhhhH---------HHHHhcCCCCEEEEE
Confidence            99999988887652         345789999999884

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.59  E-value=6.4e-08  Score=84.94  Aligned_cols=121  Identities=16%  Similarity=0.145  Sum_probs=78.2

Q ss_pred             ccccchhHHHHHHHhhhhccccCCCCCceEEEecccccH----HHHHhhcC---CCeEEEEeecCCc-chHHHHHhcCc-
Q 017983          195 FNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGG----FAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDRGL-  265 (363)
Q Consensus       195 F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~----faa~L~~~---~v~v~~v~~~d~s-~~L~~a~~Rgl-  265 (363)
                      |-.+...|.....  .+.    ..+..-+|+++|||+|.    +|..|.+.   ..+-..+.+.|.+ ..|+.|.+--. 
T Consensus         5 FFRd~~~f~~L~~--~~~----~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~   78 (193)
T d1af7a2           5 FFREAHHFPILAE--HAR----RRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYR   78 (193)
T ss_dssp             TTTTTTHHHHHHH--HHH----HSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEE
T ss_pred             CcCCcHHHHHHHH--HHh----ccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCccc
Confidence            4456667765443  221    22344589999999995    44444431   1122468899998 78877752110 


Q ss_pred             ----------------e---------------------eeeccccccCCCCC-CCcceeeeccccccccccCCHHHHHHH
Q 017983          266 ----------------I---------------------GMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVE  307 (363)
Q Consensus       266 ----------------~---------------------~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~~~~~~~L~E  307 (363)
                                      .                     ...++... ..+.+ +.||+|+|.++|.++.. ....+++..
T Consensus        79 ~~~~~~~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~fDvI~CRNVLiYf~~-~~~~~vl~~  156 (193)
T d1af7a2          79 LSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE-KQYNVPGPFDAIFCRNVMIYFDK-TTQEDILRR  156 (193)
T ss_dssp             GGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTC-SSCCCCCCEEEEEECSSGGGSCH-HHHHHHHHH
T ss_pred             HHHHhhhhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhccc-cccCCCCCccEEEeehhHHhcCH-HHHHHHHHH
Confidence                            0                     01121111 12334 89999999999999864 345789999


Q ss_pred             HhHhccCCeEEEEEcC
Q 017983          308 MDRILRPGGYVLVQDT  323 (363)
Q Consensus       308 m~RVLRPGG~lii~D~  323 (363)
                      +.+.|+|||++++...
T Consensus       157 l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         157 FVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             HGGGEEEEEEEEECTT
T ss_pred             HHHHhCCCcEEEEecC
Confidence            9999999999999754

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.58  E-value=6.2e-08  Score=85.93  Aligned_cols=110  Identities=16%  Similarity=0.097  Sum_probs=79.8

Q ss_pred             CCCHHHHHHHHHcCCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhc-ccccCCeEEEEEeCCCCC--
Q 017983            7 DEHEAQIQFALERGIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELN-RILRPGGFFIWSATPVYR--   82 (363)
Q Consensus         7 D~~~~qvq~A~erg~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~-RVLrPGG~~~~s~~~~~~--   82 (363)
                      |.|+.+++.|+++... +.+...+.+.+++ +++||+|+|+.+++|.. ++..+|.|+. |+|||||+++++.|-.+.  
T Consensus        49 D~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~-d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~  126 (225)
T d2p7ia1          49 EASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID-DPVALLKRINDDWLAEGGRLFLVCPNANAVS  126 (225)
T ss_dssp             ESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS-SHHHHHHHHHHTTEEEEEEEEEEEECTTCHH
T ss_pred             eCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecC-CHHHHHHHHHHHhcCCCceEEEEeCCcccHH
Confidence            7899999999988443 4555556777776 58999999999887765 5778999997 999999999999763221  


Q ss_pred             --------------CChhhHH--------HHHHHHHHHhhcceEEEEEecCCCceeEEEEecCCCC
Q 017983           83 --------------HDDRHRS--------VWNAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSY  126 (363)
Q Consensus        83 --------------~~~e~~~--------~~~~~~~l~~~~cw~~~~~~~~~~~~~~~i~~k~~~~  126 (363)
                                    .+.+...        .+..++.+.+....+.+...        .++-||.++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~--------~~~~kp~~~  184 (225)
T d2p7ia1         127 RQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS--------GIFFKALAN  184 (225)
T ss_dssp             HHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE--------EEEECCSCH
T ss_pred             HHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE--------EEEeccccH
Confidence                          1111000        14578899999999876543        456677664

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.57  E-value=1.6e-08  Score=92.39  Aligned_cols=99  Identities=14%  Similarity=0.211  Sum_probs=67.8

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCcee-eeccccccCCCCCCCcceeeeccccccccc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIG-MYHDWCESFNTYPRTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~-~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~  297 (363)
                      ...++|||+|||+|.++.+|+++.-. +.++-.|.+..++.+....-+. +.+|.   +-|.| ..|++++.++||+|++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~-l~~~v~Dlp~vi~~~~~~~ri~~~~gd~---~~~~p-~~D~~~l~~vLh~~~d  154 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPL-IKGINFDLPQVIENAPPLSGIEHVGGDM---FASVP-QGDAMILKAVCHNWSD  154 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCCTTEEEEECCT---TTCCC-CEEEEEEESSGGGSCH
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEecchhhhhccCCCCCeEEecCCc---ccccc-cceEEEEehhhhhCCH
Confidence            45789999999999999999874211 1234445554433221111132 23442   23455 4499999999999975


Q ss_pred             cCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          298 RCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      . +...+|+.+++.|+|||.++|.|.
T Consensus       155 e-~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         155 E-KCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             H-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             H-HHHHHHHHHHHHcCCCcEEEEEEE
Confidence            3 457899999999999999999873

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.53  E-value=2.4e-08  Score=92.10  Aligned_cols=70  Identities=19%  Similarity=0.213  Sum_probs=60.5

Q ss_pred             CCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.|+.+++.|+++    +..+.+...+++.+||++ +||+|+|+.+++|.. ++..+|.++.|+|||||++++..|
T Consensus        59 D~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~-~fD~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          59 DSGETLLAEARELFRLLPYDSEFLEGDATEIELND-KYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             ECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-CEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ecchhHhhhhhcccccccccccccccccccccccC-CceEEEEehhhhcCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence            8899999999877    445667778899999974 799999999987766 467899999999999999999876

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.4e-08  Score=90.02  Aligned_cols=105  Identities=21%  Similarity=0.152  Sum_probs=76.8

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.|+.+|+.|+++    |.+ ..+.+.+++.+++++++||+|+|..+++|+++.. ..+|.++.|+|||||.++++.+.
T Consensus        89 vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~  168 (222)
T d2ex4a1          89 VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  168 (222)
T ss_dssp             EESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eecCHHHhhccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence            38999999999987    233 3567788999999999999999999998876532 46999999999999999998542


Q ss_pred             CCCC---ChhhH---HHHHHHHHHHhhcceEEEEEec
Q 017983           80 VYRH---DDRHR---SVWNAMVNLTESMCWKAVARSV  110 (363)
Q Consensus        80 ~~~~---~~e~~---~~~~~~~~l~~~~cw~~~~~~~  110 (363)
                      ....   +....   .....+..+.+...++.+....
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         169 AQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             BSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             cccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence            2110   00000   0134677777788887776543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.52  E-value=2.1e-08  Score=89.36  Aligned_cols=71  Identities=18%  Similarity=0.287  Sum_probs=59.8

Q ss_pred             CCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccccc--CCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA--QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~--~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.|++|+..|+++    +..+.+.+.+++.||++ +.||+|+|....++|.+  +...+|.++.|+|||||+|+++.+
T Consensus        70 D~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1          70 DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            8899999999876    66788899999999998 58999999876555542  235799999999999999999865

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.3e-07  Score=87.91  Aligned_cols=128  Identities=16%  Similarity=0.357  Sum_probs=84.3

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeec-cccccCCCCC-CCcceeeec--
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYH-DWCESFNTYP-RTYDLLHSS--  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~-d~~e~~lpfp-~sFDlVh~~--  289 (363)
                      ..+|||+|||+|..+..|+..... ..|+++|.+ ..++.|.+-    |+  +.+++ |+   +.+++ +.||+|+|+  
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~---~~~~~~~~fDlIvsNPP  184 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW---FSALAGQQFAMIVSNPP  184 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST---TGGGTTCCEEEEEECCC
T ss_pred             ccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccc---ccccCCCceeEEEecch
Confidence            357999999999999988763211 247888998 777766543    22  33343 43   23566 799999996  


Q ss_pred             c-----------cccccccc---------CCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCce-eeee----
Q 017983          290 F-----------LLSDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS-TNIY----  344 (363)
Q Consensus       290 ~-----------~l~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~-~~~~----  344 (363)
                      +           ++.|-+..         ..+..++.+..+.|+|||++++--.......+.+++....|. +.+.    
T Consensus       185 Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl~  264 (274)
T d2b3ta1         185 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYG  264 (274)
T ss_dssp             CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTT
T ss_pred             hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECCC
Confidence            1           11111110         123568899999999999999964444457888888888885 3333    


Q ss_pred             -cceEEEEE
Q 017983          345 -HDQFLVGK  352 (363)
Q Consensus       345 -~~~~li~~  352 (363)
                       ..+++++|
T Consensus       265 g~~R~v~~r  273 (274)
T d2b3ta1         265 DNERVTLGR  273 (274)
T ss_dssp             SSEEEEEEE
T ss_pred             CCceEEEEe
Confidence             55666654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.47  E-value=1.1e-07  Score=84.07  Aligned_cols=73  Identities=8%  Similarity=0.045  Sum_probs=58.6

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccccc-CCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDA-QGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~-~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|+.|++.|+++    +....+....+..++++.+.||+|+|+.++++++. +...+|+|+.|+|||||.|+++.+
T Consensus        71 iD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_          71 IDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             ECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence            48999999999986    44444444555667788889999999988877653 446899999999999999999865

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.42  E-value=4.4e-08  Score=89.33  Aligned_cols=103  Identities=16%  Similarity=0.202  Sum_probs=73.9

Q ss_pred             CCCHHHHHHHHHc--CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeCCCCC
Q 017983            7 DEHEAQIQFALER--GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSATPVYR   82 (363)
Q Consensus         7 D~~~~qvq~A~er--g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~~~~~   82 (363)
                      |.++.+++.|+++  +.+ +.+.+.+++.+++++++||+|+|+.+++|+++++ ..+|.++.|+|||||+++++.+....
T Consensus       123 D~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~  202 (254)
T d1xtpa_         123 EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG  202 (254)
T ss_dssp             ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--
T ss_pred             cCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCC
Confidence            7899999999988  444 3566778999999999999999999999987532 47899999999999999997542210


Q ss_pred             ----CChhhH---HHHHHHHHHHhhcceEEEEEe
Q 017983           83 ----HDDRHR---SVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        83 ----~~~e~~---~~~~~~~~l~~~~cw~~~~~~  109 (363)
                          ...++.   ...+.++.|.+.-.++++..+
T Consensus       203 ~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~  236 (254)
T d1xtpa_         203 DRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA  236 (254)
T ss_dssp             CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred             CcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence                000100   012345666666677666544

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.41  E-value=6.9e-08  Score=87.10  Aligned_cols=73  Identities=21%  Similarity=0.184  Sum_probs=59.9

Q ss_pred             CCCCHHHHHHHHHc----CC--CceeeecccCCCCC-CCCCccEEEeCCcccccccC---CCchhhhhcccccCCeEEEE
Q 017983            6 KDEHEAQIQFALER----GI--PAILSVIGTQKLTF-PDDAYDLIHCARCRVHWDAQ---GGKPLLELNRILRPGGFFIW   75 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~--p~~~~~~~~~~LPf-pd~sFD~v~cs~~~~~~~~~---~~~~l~E~~RVLrPGG~~~~   75 (363)
                      -|.|+.|++.|.+|    +.  .+.+.+.++..+++ ++++||+|+|..+++|...+   ...+|.++.|+|||||+|++
T Consensus        53 iD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~  132 (252)
T d1ri5a_          53 VDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM  132 (252)
T ss_dssp             EESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEE
Confidence            38999999999887    22  36667788877777 57899999999988887542   24699999999999999999


Q ss_pred             EeC
Q 017983           76 SAT   78 (363)
Q Consensus        76 s~~   78 (363)
                      +.|
T Consensus       133 ~~~  135 (252)
T d1ri5a_         133 TVP  135 (252)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            987

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.38  E-value=1.2e-07  Score=89.62  Aligned_cols=117  Identities=16%  Similarity=0.188  Sum_probs=72.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc--eeeecccccc---CCCCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCES---FNTYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~---~lpfp-~sFDlVh~~  289 (363)
                      ..+|||++||+|+|+.+++..   ...|+.+|.+ .+++.+.+.    |+  +.+++..+..   .++.. ++||+|++.
T Consensus       146 g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            469999999999999998753   3367888988 788766544    33  2222221111   13334 799999985


Q ss_pred             c-cccc----c-cccCCHHHHHHHHhHhccCCeEEEEEcC------HHHHHHHHHHHHhCCce
Q 017983          290 F-LLSD----V-TQRCDIADVAVEMDRILRPGGYVLVQDT------LEMINKLKPVLHSLQWS  340 (363)
Q Consensus       290 ~-~l~~----~-~~~~~~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~l~~~l~W~  340 (363)
                      - ++..    . .......+++..+.++|||||.++++.-      .++.+.+.+-+..-..+
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~  285 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRL  285 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCC
Confidence            2 1110    0 0011234688899999999999999743      23444455544444433

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.33  E-value=1.3e-07  Score=85.71  Aligned_cols=97  Identities=14%  Similarity=0.261  Sum_probs=67.3

Q ss_pred             CCCceEEEecccccHHHHHhhcC-C-CeEEEEeecCCcchHHHHHhcCce-eeeccccccCCCCCCCcceeeeccccccc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQ-P-LWVMNVVPIDAPDTLSIIFDRGLI-GMYHDWCESFNTYPRTYDLLHSSFLLSDV  295 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~-~-v~v~~v~~~d~s~~L~~a~~Rgl~-~~~~d~~e~~lpfp~sFDlVh~~~~l~~~  295 (363)
                      ...++|||+|||+|.++.+|+++ + ..   ++..|.+..++.+....-+ .+.+|.   +-|.|. .|+++..+++++|
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~---~~v~Dlp~vi~~~~~~~r~~~~~~d~---~~~~P~-ad~~~l~~vlh~~  152 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYPTIK---GINFDLPHVIEDAPSYPGVEHVGGDM---FVSIPK-ADAVFMKWICHDW  152 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCTTSE---EEEEECTTTTTTCCCCTTEEEEECCT---TTCCCC-CSCEECSSSSTTS
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCe---EEEcccHHhhhhcccCCceEEecccc---cccCCC-cceEEEEEEeecC
Confidence            34689999999999999999874 2 33   3444555444433333322 334443   234552 4667788899988


Q ss_pred             cccCCHHHHHHHHhHhccCCeEEEEEcC
Q 017983          296 TQRCDIADVAVEMDRILRPGGYVLVQDT  323 (363)
Q Consensus       296 ~~~~~~~~~L~Em~RVLRPGG~lii~D~  323 (363)
                      .+. +...+|+++.+.|+|||.++|.|.
T Consensus       153 ~d~-~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         153 SDE-HCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             CHH-HHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             CHH-HHHHHHHHHHHhcCCCceEEEEEE
Confidence            653 567899999999999999999864

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.31  E-value=1.3e-07  Score=79.76  Aligned_cols=96  Identities=17%  Similarity=0.181  Sum_probs=63.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCCC-CCcceeeeccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpfp-~sFDlVh~~~~  291 (363)
                      ..+|||+|||+|.++.+.+.+++.  .|+.+|.+ ++++.+.+-    ++   +.++...+...+..+ +.||+|++.= 
T Consensus        15 g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP-   91 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP-   91 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC-
T ss_pred             CCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech-
Confidence            469999999999999888888764  57777877 565544332    32   445555555556666 9999999862 


Q ss_pred             cccccccCCHHHHHHHH--hHhccCCeEEEEEc
Q 017983          292 LSDVTQRCDIADVAVEM--DRILRPGGYVLVQD  322 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D  322 (363)
                        .+.. ......|..+  .++|+|||.+++..
T Consensus        92 --Py~~-~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          92 --PYAK-ETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             --SSHH-HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             --hhcc-chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence              1111 1123344433  47899999999853

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.29  E-value=1.8e-07  Score=84.14  Aligned_cols=91  Identities=15%  Similarity=0.189  Sum_probs=59.3

Q ss_pred             CceEEEecccccHHHHHhhcC----CC-eEEEEeecCCc-chHHHHHhc---------Cc--eeeeccccccCCCCC-CC
Q 017983          221 VRNVMDMNASYGGFAAALIDQ----PL-WVMNVVPIDAP-DTLSIIFDR---------GL--IGMYHDWCESFNTYP-RT  282 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~----~v-~v~~v~~~d~s-~~L~~a~~R---------gl--~~~~~d~~e~~lpfp-~s  282 (363)
                      ..+|||+|||+|.+++.|+..    ++ ....|..++.. ++++.|.++         +.  +.+.+..+.. ...+ ..
T Consensus        81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~-~~~~~~~  159 (223)
T d1r18a_          81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAP  159 (223)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCS
T ss_pred             CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccc-ccccccc
Confidence            469999999999998888652    21 00124555666 566666443         11  2333333332 2223 89


Q ss_pred             cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ||.|++...+.++++         .+.+.|||||++++-
T Consensus       160 fD~Iiv~~a~~~~p~---------~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         160 YNAIHVGAAAPDTPT---------ELINQLASGGRLIVP  189 (223)
T ss_dssp             EEEEEECSCBSSCCH---------HHHHTEEEEEEEEEE
T ss_pred             eeeEEEEeechhchH---------HHHHhcCCCcEEEEE
Confidence            999999999887652         356899999999874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.29  E-value=2.9e-07  Score=79.80  Aligned_cols=71  Identities=24%  Similarity=0.375  Sum_probs=56.9

Q ss_pred             CCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |+|+.+++.|.++    |++ +.+...+...+++ +++||+|+|..+++|.++. ...+|.++.|+|||||++++...
T Consensus        59 D~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          59 DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             ESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            8899999877644    676 4556667788886 6899999999999887643 24699999999999999999743

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.27  E-value=1.4e-06  Score=79.87  Aligned_cols=133  Identities=12%  Similarity=0.126  Sum_probs=83.5

Q ss_pred             hccccchhHHHHHHHhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---
Q 017983          194 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---  265 (363)
Q Consensus       194 ~F~~~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---  265 (363)
                      .|.......+.++.. .     +++  ..+|||+|||+|.|+..++.++..  .|+++|.+ ..++.+.+.    |+   
T Consensus        89 ~f~~~~~~er~ri~~-~-----~~~--g~~VlD~~aG~G~~~l~~a~~~~~--~V~avd~n~~a~~~~~~N~~~n~l~~~  158 (260)
T d2frna1          89 MFSPANVKERVRMAK-V-----AKP--DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDR  158 (260)
T ss_dssp             CCCGGGHHHHHHHHH-H-----CCT--TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTT
T ss_pred             cEecCCHHHHHHHHh-h-----cCC--ccEEEECcceEcHHHHHHHHhCCc--EEEEecCCHHHHHHHHHHHHHhCCCce
Confidence            344555555655543 1     123  469999999999999988876531  36777877 555544332    33   


Q ss_pred             eeeeccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC-------HHHHHHHHHHHHhCC
Q 017983          266 IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-------LEMINKLKPVLHSLQ  338 (363)
Q Consensus       266 ~~~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-------~~~~~~i~~l~~~l~  338 (363)
                      +.+++..+.. ++-.+.||.|++..--       .-..+|.+..++|||||++.+-+.       .+..+.+.++++...
T Consensus       159 v~~~~~D~~~-~~~~~~~D~Ii~~~p~-------~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g  230 (260)
T d2frna1         159 MSAYNMDNRD-FPGENIADRILMGYVV-------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYG  230 (260)
T ss_dssp             EEEECSCTTT-CCCCSCEEEEEECCCS-------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTT
T ss_pred             EEEEEcchHH-hccCCCCCEEEECCCC-------chHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcC
Confidence            4455544432 2222889999865211       123488889999999999866432       224566778887777


Q ss_pred             ceeeee
Q 017983          339 WSTNIY  344 (363)
Q Consensus       339 W~~~~~  344 (363)
                      +++...
T Consensus       231 ~~v~~~  236 (260)
T d2frna1         231 YDVEKL  236 (260)
T ss_dssp             CEEEEE
T ss_pred             CceEEE
Confidence            776543

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=3.7e-07  Score=80.39  Aligned_cols=113  Identities=15%  Similarity=0.257  Sum_probs=77.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-----eeeecccccc----CCCCC-CCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCES----FNTYP-RTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-----~~~~~d~~e~----~lpfp-~sFDlVh~~  289 (363)
                      ..++||++||+|+++.++++.-.. ..|++.|.. .|++.+.++.-     +..++.....    ...+. ++||.|...
T Consensus        24 ~~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~D  102 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD  102 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeec
Confidence            459999999999999999874212 257888888 89999988632     3333332211    12466 899999988


Q ss_pred             ccccccc------ccCCHHHHHHHHhHhccCCeEEEEEcCHHHH-HHHHHHH
Q 017983          290 FLLSDVT------QRCDIADVAVEMDRILRPGGYVLVQDTLEMI-NKLKPVL  334 (363)
Q Consensus       290 ~~l~~~~------~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~l~  334 (363)
                      ..++..+      ......+.|.++.++|+|||.+++......- .-++.+.
T Consensus       103 lGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f  154 (192)
T d1m6ya2         103 LGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETF  154 (192)
T ss_dssp             CSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred             cchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHH
Confidence            7775321      2223578999999999999999888765432 2344444

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.22  E-value=4.5e-07  Score=82.43  Aligned_cols=99  Identities=14%  Similarity=0.238  Sum_probs=66.9

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCcchHHHHHhcCcee-eeccccccCCCCCCCcceeeeccccccccc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIG-MYHDWCESFNTYPRTYDLLHSSFLLSDVTQ  297 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s~~L~~a~~Rgl~~-~~~d~~e~~lpfp~sFDlVh~~~~l~~~~~  297 (363)
                      ...++|||||||+|.++..++++.-. +.++..|.++.++.+....-+. +.+|.   +-|. ..+|++++.++||+|.+
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~vi~~~~~~~rv~~~~gD~---f~~~-p~aD~~~l~~vLHdw~d  153 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPK-LKCIVFDRPQVVENLSGSNNLTYVGGDM---FTSI-PNADAVLLKYILHNWTD  153 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCBTTEEEEECCT---TTCC-CCCSEEEEESCGGGSCH
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCC-CeEEEecCHHHHHhCcccCceEEEecCc---ccCC-CCCcEEEEEeecccCCh
Confidence            34679999999999999999874211 1244456554443322222233 33442   2233 46799999999999976


Q ss_pred             cCCHHHHHHHHhHhccCC---eEEEEEcC
Q 017983          298 RCDIADVAVEMDRILRPG---GYVLVQDT  323 (363)
Q Consensus       298 ~~~~~~~L~Em~RVLRPG---G~lii~D~  323 (363)
                      . ....+|+.+.+.|+||   |.++|.|.
T Consensus       154 ~-~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         154 K-DCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             H-HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             H-HHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence            4 4568999999999999   77888763

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.21  E-value=4.6e-07  Score=80.73  Aligned_cols=72  Identities=21%  Similarity=0.339  Sum_probs=57.9

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCccccc-c--cCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHW-D--AQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~-~--~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.|++|++.|+++    |.++.+.+.++..++++ ++||+|+|....+++ .  ++...+|.++.|.|||||.|++...
T Consensus        65 vD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_          65 VDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             eccchhhhhhccccccccCccceeeccchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            38999999999876    77888888888888875 699999996544333 2  2345699999999999999998754

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7.3e-06  Score=73.23  Aligned_cols=125  Identities=15%  Similarity=0.106  Sum_probs=78.7

Q ss_pred             CCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHH----hcCc---eeeeccccccCCC-----C-CCC
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIF----DRGL---IGMYHDWCESFNT-----Y-PRT  282 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~----~Rgl---~~~~~d~~e~~lp-----f-p~s  282 (363)
                      +.++||++|||+|.-+.+|+..   +..+.   .+|.. +....|.    +.|+   +......+...++     . +++
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~---tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~  135 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVV---TCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT  135 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEE---EEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEE---EEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCC
Confidence            3579999999999988888763   33443   33443 3333332    2243   2222211111121     2 379


Q ss_pred             cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH------------H----HHHHHHHHHHhCCceeeee--
Q 017983          283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------E----MINKLKPVLHSLQWSTNIY--  344 (363)
Q Consensus       283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~----~~~~i~~l~~~l~W~~~~~--  344 (363)
                      ||+|+..    |  ++......+.++.+.|||||.+++-+..            .    +-+..+.+.+.-+|....-  
T Consensus       136 fD~ifiD----~--dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPi  209 (219)
T d2avda1         136 FDVAVVD----A--DKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL  209 (219)
T ss_dssp             EEEEEEC----S--CSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred             ccEEEEe----C--CHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeec
Confidence            9999986    2  3345677899999999999999987531            1    2233455567778887665  


Q ss_pred             cceEEEEEe
Q 017983          345 HDQFLVGKK  353 (363)
Q Consensus       345 ~~~~li~~K  353 (363)
                      .+.++|++|
T Consensus       210 gdGl~ia~K  218 (219)
T d2avda1         210 GDGLTLAFK  218 (219)
T ss_dssp             TTCEEEEEE
T ss_pred             CCeeEEEEe
Confidence            677999988

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.4e-07  Score=82.51  Aligned_cols=71  Identities=11%  Similarity=0.010  Sum_probs=54.9

Q ss_pred             CCCHHHHHHHHHc--C---CCce---eeecccC------CCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeE
Q 017983            7 DEHEAQIQFALER--G---IPAI---LSVIGTQ------KLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGF   72 (363)
Q Consensus         7 D~~~~qvq~A~er--g---~p~~---~~~~~~~------~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~   72 (363)
                      |.|+.+++.|.++  +   ++..   +....++      ..++++++||+|+|+.+++|+. ++..+|.++.|+|||||+
T Consensus        77 D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~-d~~~~l~~l~~~LkpgG~  155 (280)
T d1jqea_          77 EPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAK  155 (280)
T ss_dssp             CCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEE
T ss_pred             eCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCC-CHHHHHHHHHhhCCCCCE
Confidence            8999999999987  2   2211   1122221      3578999999999999987765 467899999999999999


Q ss_pred             EEEEeC
Q 017983           73 FIWSAT   78 (363)
Q Consensus        73 ~~~s~~   78 (363)
                      +++..+
T Consensus       156 l~i~~~  161 (280)
T d1jqea_         156 MLIIVV  161 (280)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999865

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.16  E-value=9.6e-07  Score=83.24  Aligned_cols=100  Identities=14%  Similarity=0.117  Sum_probs=64.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeecccccc---CCCCC-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCES---FNTYP-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~---~lpfp-~sFDlVh~  288 (363)
                      ..+|||++||+|+|+.+++..+..  .|+.+|.+ .+++.+.+.    |+   +.+++..+..   .++.. .+||+|++
T Consensus       146 g~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            359999999999999999887653  46777887 677665443    33   2222221211   12334 79999998


Q ss_pred             ccc-cc-ccc----ccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          289 SFL-LS-DVT----QRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       289 ~~~-l~-~~~----~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      .-- +. +-.    ......+++....++|||||.++++.
T Consensus       224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            421 11 100    00123568888999999999999975

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.13  E-value=1.3e-06  Score=78.15  Aligned_cols=96  Identities=14%  Similarity=0.194  Sum_probs=61.2

Q ss_pred             hhhccccCCCCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc--eeeeccccccCCCCC-
Q 017983          210 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-  280 (363)
Q Consensus       210 y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl--~~~~~d~~e~~lpfp-  280 (363)
                      .++.+.++++  .+|||+|||+|.+++.|+.. +..   |+.++.. ++.+.+.++    |+  +.+.+....  ..++ 
T Consensus        70 ml~~L~l~~g--~~VLeIGsGsGY~taila~l~g~~---V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~--~g~~~  142 (215)
T d1jg1a_          70 MLEIANLKPG--MNILEVGTGSGWNAALISEIVKTD---VYTIERIPELVEFAKRNLERAGVKNVHVILGDGS--KGFPP  142 (215)
T ss_dssp             HHHHHTCCTT--CCEEEECCTTSHHHHHHHHHHCSC---EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG--GCCGG
T ss_pred             HHHhhccCcc--ceEEEecCCCChhHHHHHHhhCce---eEEEeccHHHHHHHHHHHHHcCCceeEEEECccc--cCCcc
Confidence            3444556655  59999999999999888763 322   3344444 455544443    33  233333222  2234 


Q ss_pred             -CCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          281 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       281 -~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                       ..||.|++.....++++      .   +..-|||||++++-
T Consensus       143 ~~pfD~Iiv~~a~~~ip~------~---l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         143 KAPYDVIIVTAGAPKIPE------P---LIEQLKIGGKLIIP  175 (215)
T ss_dssp             GCCEEEEEECSBBSSCCH------H---HHHTEEEEEEEEEE
T ss_pred             cCcceeEEeecccccCCH------H---HHHhcCCCCEEEEE
Confidence             99999999999987763      2   33469999999874

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=2.2e-06  Score=79.25  Aligned_cols=131  Identities=13%  Similarity=0.126  Sum_probs=80.5

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeec-cccccCCCCC-CCcceeeec-
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYH-DWCESFNTYP-RTYDLLHSS-  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~-d~~e~~lpfp-~sFDlVh~~-  289 (363)
                      ..+|||+|||+|..+..++..+-.  .|+++|.+ ..++.|.+.    |+   +.+.+ +|.+ .++.. +.||+|+|+ 
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~--~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~-~~~~~~~~fDlIVsNP  187 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFKEKFASIEMILSNP  187 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGGGGTTTCCEEEECC
T ss_pred             ccEEEEeeeeeehhhhhhhhcccc--eeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccc-ccccccCcccEEEEcc
Confidence            458999999999888887764422  46788988 777766543    33   33333 3322 12223 689999987 


Q ss_pred             ------c----cccccc------ccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCceeeee-cceEEEEE
Q 017983          290 ------F----LLSDVT------QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY-HDQFLVGK  352 (363)
Q Consensus       290 ------~----~l~~~~------~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~-~~~~li~~  352 (363)
                            .    ...|-+      ..++++.+-.=+.+.|+|||++++--..+.-+.++++++...|..... .+++++.+
T Consensus       188 PYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~~kDl~g~~R~~~~~  267 (271)
T d1nv8a_         188 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDTVFLKDSAGKYRFLLLN  267 (271)
T ss_dssp             CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTCEEEECTTSSEEEEEEE
T ss_pred             cccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHHhCCEEeccCCCcEEEEEE
Confidence                  1    111111      111222221225688999999988655555567777777766633222 67899999


Q ss_pred             ec
Q 017983          353 KG  354 (363)
Q Consensus       353 K~  354 (363)
                      |+
T Consensus       268 k~  269 (271)
T d1nv8a_         268 RR  269 (271)
T ss_dssp             CC
T ss_pred             Ec
Confidence            86

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=2.2e-06  Score=76.30  Aligned_cols=114  Identities=16%  Similarity=0.192  Sum_probs=67.7

Q ss_pred             CCceEEEecccccHHHHHhhcC---CCeEEEEeecCCc-chHHHHH----hcCc---eeeeccccccCCC-----CC-CC
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIF----DRGL---IGMYHDWCESFNT-----YP-RT  282 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s-~~L~~a~----~Rgl---~~~~~d~~e~~lp-----fp-~s  282 (363)
                      +.++||++|||+|..+.+|+..   +..   |+.+|.. ++++.|.    ..|+   +..+...+...+|     +. ++
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~---v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~  132 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGAR---LLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT  132 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCE---EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccE---EEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence            3579999999999999888763   334   4455655 5665553    2354   3333222222232     55 78


Q ss_pred             cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcC-----HHHHHHHHHHHHhCCceeee
Q 017983          283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWSTNI  343 (363)
Q Consensus       283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~~~~  343 (363)
                      ||+|+....-..+    .....+.|..|.|||||.+++-|.     .+.+..|+.   .-+|....
T Consensus       133 ~D~ifiD~~~~~~----~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~  191 (214)
T d2cl5a1         133 LDMVFLDHWKDRY----LPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH  191 (214)
T ss_dssp             EEEEEECSCGGGH----HHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEE
T ss_pred             cceeeeccccccc----ccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehh
Confidence            9999986322211    123367888999999997666442     344444443   45565443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.01  E-value=2.2e-05  Score=68.78  Aligned_cols=115  Identities=8%  Similarity=0.089  Sum_probs=69.8

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----c-eeeeccccccCCCCCCCcceeeecccccc
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-IGMYHDWCESFNTYPRTYDLLHSSFLLSD  294 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l-~~~~~d~~e~~lpfp~sFDlVh~~~~l~~  294 (363)
                      ..+|||+|||+|.++.+++.++..  .|+++|.+ .+++.+.+..    . ..++.   .....++..||+|+++==+..
T Consensus        47 g~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~---~d~~~~~~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFI---GDVSEFNSRVDIVIMNPPFGS  121 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEE---SCGGGCCCCCSEEEECCCCSS
T ss_pred             CCEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCCCceEEE---CchhhhCCcCcEEEEcCcccc
Confidence            459999999999999888877643  46788888 7887776542    2 22222   122445688999998744432


Q ss_pred             ccccCCHHHHHHHHhHhccCCeEEEE--EcCHHHHHHHHHHHHhCCceeeee
Q 017983          295 VTQRCDIADVAVEMDRILRPGGYVLV--QDTLEMINKLKPVLHSLQWSTNIY  344 (363)
Q Consensus       295 ~~~~~~~~~~L~Em~RVLRPGG~lii--~D~~~~~~~i~~l~~~l~W~~~~~  344 (363)
                      .....+. ..+.   +-+.+++.++.  .........++.++....|.....
T Consensus       122 ~~~~~d~-~~l~---~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~  169 (201)
T d1wy7a1         122 QRKHADR-PFLL---KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR  169 (201)
T ss_dssp             SSTTTTH-HHHH---HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred             ccccccH-HHHH---HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEEE
Confidence            2222222 1222   22334444433  344555667888888888876543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.3e-07  Score=80.77  Aligned_cols=76  Identities=11%  Similarity=-0.039  Sum_probs=53.1

Q ss_pred             CCCCCCCCccEEEeCCccccccc---CCCchhhhhcccccCCeEEEEEeCCCCCC---Ch----hhHHHHHHHHHHHhhc
Q 017983           32 KLTFPDDAYDLIHCARCRVHWDA---QGGKPLLELNRILRPGGFFIWSATPVYRH---DD----RHRSVWNAMVNLTESM  101 (363)
Q Consensus        32 ~LPfpd~sFD~v~cs~~~~~~~~---~~~~~l~E~~RVLrPGG~~~~s~~~~~~~---~~----e~~~~~~~~~~l~~~~  101 (363)
                      ..|+++++||+|+|..|++|.+.   +...++.++.|+|||||+|+++.......   ..    ...-....+.++.+..
T Consensus       145 ~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  224 (257)
T d2a14a1         145 LAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDA  224 (257)
T ss_dssp             TTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHT
T ss_pred             cccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHC
Confidence            35899999999999999988763   23468999999999999999986532100   00    0000134567777888


Q ss_pred             ceEEEE
Q 017983          102 CWKAVA  107 (363)
Q Consensus       102 cw~~~~  107 (363)
                      .++.+.
T Consensus       225 Gf~v~~  230 (257)
T d2a14a1         225 GFDIEQ  230 (257)
T ss_dssp             TEEEEE
T ss_pred             CCEEEE
Confidence            887554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.00  E-value=3.6e-06  Score=79.22  Aligned_cols=100  Identities=15%  Similarity=0.182  Sum_probs=61.1

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCCC---C-CCcceee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNTY---P-RTYDLLH  287 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lpf---p-~sFDlVh  287 (363)
                      .++|||+.||+|+|+.+++..+..  .|+.+|.+ ..++.+.+.    |+    +.++...+...+..   . +.||+|+
T Consensus       145 g~~VLdlf~~~G~~sl~aa~~ga~--~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii  222 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  222 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceeecCCCCcHHHHHHHhCCCc--eEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence            369999999999999888776642  24556766 556554432    33    22233223222322   2 6899999


Q ss_pred             ec---cccc--cc-cccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          288 SS---FLLS--DV-TQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       288 ~~---~~l~--~~-~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      +.   +.-+  .. .-..+..+++....++|+|||.++++.
T Consensus       223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            84   1111  00 000124568888999999999999974

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=5.5e-06  Score=73.27  Aligned_cols=72  Identities=13%  Similarity=-0.043  Sum_probs=57.2

Q ss_pred             CCCCHHHHHHHHHcC----------------------CCceeeecccCCC-CCCCCCccEEEeCCcccccccC-CCchhh
Q 017983            6 KDEHEAQIQFALERG----------------------IPAILSVIGTQKL-TFPDDAYDLIHCARCRVHWDAQ-GGKPLL   61 (363)
Q Consensus         6 ~D~~~~qvq~A~erg----------------------~p~~~~~~~~~~L-Pfpd~sFD~v~cs~~~~~~~~~-~~~~l~   61 (363)
                      -|.|+.+|+.|.++.                      ..+.+.+.+...| ++++++||+|..+.+++|.+.+ ...++.
T Consensus        73 vD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~  152 (229)
T d2bzga1          73 VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYAD  152 (229)
T ss_dssp             ECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHH
T ss_pred             EeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHH
Confidence            389999999998762                      2345556666566 5788999999999999888654 357999


Q ss_pred             hhcccccCCeEEEEEe
Q 017983           62 ELNRILRPGGFFIWSA   77 (363)
Q Consensus        62 E~~RVLrPGG~~~~s~   77 (363)
                      ++.|+|||||++++..
T Consensus       153 ~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         153 TMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             HHHHTEEEEEEEEEEE
T ss_pred             HHHhhcCCcceEEEEE
Confidence            9999999999988873

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.86  E-value=2.1e-05  Score=69.19  Aligned_cols=64  Identities=16%  Similarity=0.081  Sum_probs=45.7

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc-eeeeccccccCCCCCCCcceeeec
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYPRTYDLLHSS  289 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl-~~~~~d~~e~~lpfp~sFDlVh~~  289 (363)
                      .++|||+|||+|.++..++..+..  .|+++|.+ .+++.|++... +.+.....   ..+++.||+|+++
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~~~~~~~~D~---~~l~~~fD~Vi~N  114 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVADV---SEISGKYDTWIMN  114 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECCG---GGCCCCEEEEEEC
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccccccEEEEeh---hhcCCcceEEEeC
Confidence            469999999999998888777644  47788888 78888776532 23332212   2246889999997

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.85  E-value=1.1e-05  Score=74.05  Aligned_cols=87  Identities=17%  Similarity=0.200  Sum_probs=65.2

Q ss_pred             CCCCHHHHHHHHHc------C-C-CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER------G-I-PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er------g-~-p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.++.+++.|+++      + . ...+.+.+....+|++++||+|++.     .+ ++..++.++.|+|||||++++..
T Consensus       127 ~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ld-----lp-~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         127 YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD-----ML-APWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE-----SS-CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEEe-----cC-CHHHHHHHHHhccCCCCEEEEEe
Confidence            38899999999863      1 1 3455666788889999999999873     33 35679999999999999999988


Q ss_pred             CCCCCCChhhHHHHHHHHHHHhhcceEE
Q 017983           78 TPVYRHDDRHRSVWNAMVNLTESMCWKA  105 (363)
Q Consensus        78 ~~~~~~~~e~~~~~~~~~~l~~~~cw~~  105 (363)
                      |-+.       +.++.++.|...-.|..
T Consensus       201 P~i~-------Qv~~~~~~l~~~~~f~~  221 (264)
T d1i9ga_         201 ATVT-------QLSRIVEALRAKQCWTE  221 (264)
T ss_dssp             SSHH-------HHHHHHHHHHHHSSBCC
T ss_pred             CccC-------hHHHHHHHHHHcCCeec
Confidence            8432       56677777754545643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.3e-06  Score=77.73  Aligned_cols=69  Identities=19%  Similarity=0.110  Sum_probs=50.3

Q ss_pred             CCCHHHHHHHHHcC----CCceeeeccc--CCCCCCCCCccEEEe-----CCcccccccCCCchhhhhcccccCCeEEEE
Q 017983            7 DEHEAQIQFALERG----IPAILSVIGT--QKLTFPDDAYDLIHC-----ARCRVHWDAQGGKPLLELNRILRPGGFFIW   75 (363)
Q Consensus         7 D~~~~qvq~A~erg----~p~~~~~~~~--~~LPfpd~sFD~v~c-----s~~~~~~~~~~~~~l~E~~RVLrPGG~~~~   75 (363)
                      |+|+.+++.|+++.    ..+.+...++  ...++++++||.|+.     ....+|+.+ ...++.|+.|+|||||.|++
T Consensus        83 d~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~-~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1          83 ECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQ-FNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             ECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHH-HHHHHHTHHHHEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccccccccccccC-HHHHHHHHHHHcCCCcEEEE
Confidence            78999999999873    2233333333  345889999999874     445555443 45799999999999999988


Q ss_pred             E
Q 017983           76 S   76 (363)
Q Consensus        76 s   76 (363)
                      .
T Consensus       162 ~  162 (229)
T d1zx0a1         162 C  162 (229)
T ss_dssp             C
T ss_pred             E
Confidence            5

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.85  E-value=6.7e-06  Score=76.47  Aligned_cols=70  Identities=14%  Similarity=0.062  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCC--------CchhhhhcccccCCeEEE
Q 017983            7 DEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG--------GKPLLELNRILRPGGFFI   74 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~--------~~~l~E~~RVLrPGG~~~   74 (363)
                      ++|+.|+..|.++    |+...+.. .....++++++||.|+|-..+.|+.+..        ..+++++.|+|||||.|+
T Consensus        91 t~s~~q~~~a~~~~~~~~l~~~v~~-~~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~  169 (291)
T d1kpia_          91 TLSENQYAHDKAMFDEVDSPRRKEV-RIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRML  169 (291)
T ss_dssp             ESCHHHHHHHHHHHHHSCCSSCEEE-EECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEE
T ss_pred             cchHHHHHHHHHHHHhhccchhhhh-hhhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceE
Confidence            6899999888776    65533322 2334578899999999999999987521        368999999999999999


Q ss_pred             EEe
Q 017983           75 WSA   77 (363)
Q Consensus        75 ~s~   77 (363)
                      +.+
T Consensus       170 l~~  172 (291)
T d1kpia_         170 LHT  172 (291)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            863

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.84  E-value=3.5e-06  Score=72.17  Aligned_cols=94  Identities=15%  Similarity=0.208  Sum_probs=57.5

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cce-eeeccccccCC---CCC-CCcceeeeccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-GMYHDWCESFN---TYP-RTYDLLHSSFL  291 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl~-~~~~d~~e~~l---pfp-~sFDlVh~~~~  291 (363)
                      .+|||+|||+|.++.+.+.++..   ++.+|.+ .+++.+.+-    |+. .+....+..++   ... ..||+|++.  
T Consensus        43 ~~vLDl~~G~G~~~i~a~~~ga~---vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D--  117 (171)
T d1ws6a1          43 GRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA--  117 (171)
T ss_dssp             CEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC--
T ss_pred             CeEEEeccccchhhhhhhhccch---hhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc--
Confidence            48999999999999988888865   4467877 666655432    331 12211122122   234 789999985  


Q ss_pred             cccccccCCHHHHHHHH--hHhccCCeEEEEEcC
Q 017983          292 LSDVTQRCDIADVAVEM--DRILRPGGYVLVQDT  323 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D~  323 (363)
                       ..+..  +....+.++  ...|+|||.+++...
T Consensus       118 -PPY~~--~~~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         118 -PPYAM--DLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             -CCTTS--CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             -ccccc--CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence             21111  122344444  358999999988643

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.3e-05  Score=69.24  Aligned_cols=94  Identities=9%  Similarity=0.079  Sum_probs=60.9

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh---c-Cc--eeeeccccccCCCCC-CCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD---R-GL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~---R-gl--~~~~~d~~e~~lpfp-~sFDlVh~~~~l~  293 (363)
                      .+|||++||+|.++.+.+.+++.  .|+.+|.+ +.++.+.+   + +.  ..++...+..++.-. ..||+|++.   .
T Consensus        45 ~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~D---P  119 (183)
T d2fpoa1          45 AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVD---P  119 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEEC---C
T ss_pred             hhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEc---C
Confidence            48999999999999988888865  35666766 55544332   2 22  223333233345445 899999997   3


Q ss_pred             cccccCCHHHHHHHHh--HhccCCeEEEEE
Q 017983          294 DVTQRCDIADVAVEMD--RILRPGGYVLVQ  321 (363)
Q Consensus       294 ~~~~~~~~~~~L~Em~--RVLRPGG~lii~  321 (363)
                      .+.. ...+.++.-+.  .+|+|+|.+++-
T Consensus       120 PY~~-~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         120 PFRR-GLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             SSST-TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cccc-chHHHHHHHHHHCCCCCCCeEEEEE
Confidence            3322 23455555554  479999999984

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.77  E-value=9e-06  Score=71.74  Aligned_cols=71  Identities=15%  Similarity=0.207  Sum_probs=54.4

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCC--CCCCCccEEEeCCcccccccCC--------CchhhhhcccccCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT--FPDDAYDLIHCARCRVHWDAQG--------GKPLLELNRILRPG   70 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~~~~~--------~~~l~E~~RVLrPG   70 (363)
                      -|++..+|+.|.++    |+. +.+...++..|+  |++++||.|++... .||+...        ..+|.++.|+||||
T Consensus        59 iD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp-~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg  137 (204)
T d2fcaa1          59 IELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS-DPWPKKRHEKRRLTYSHFLKKYEEVMGKG  137 (204)
T ss_dssp             ECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-CCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             eecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc-cccchhhhcchhhhHHHHHHHHHHhCCCC
Confidence            47888888877654    776 555666788886  99999999987543 4665422        25899999999999


Q ss_pred             eEEEEEe
Q 017983           71 GFFIWSA   77 (363)
Q Consensus        71 G~~~~s~   77 (363)
                      |.|.+.+
T Consensus       138 G~l~i~T  144 (204)
T d2fcaa1         138 GSIHFKT  144 (204)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            9999875

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.76  E-value=0.00016  Score=65.37  Aligned_cols=149  Identities=15%  Similarity=0.211  Sum_probs=86.3

Q ss_pred             cchhHHHHHHHhhhhccccCCCCCceEEEeccccc--HHHHHhhcCCCeEEEEeecCCc----chHHHHHhc-Cc--eee
Q 017983          198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYG--GFAAALIDQPLWVMNVVPIDAP----DTLSIIFDR-GL--IGM  268 (363)
Q Consensus       198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G--~faa~L~~~~v~v~~v~~~d~s----~~L~~a~~R-gl--~~~  268 (363)
                      ....|.+.+.+...-..-+......+|+|+|+|.|  |...++......   ++-+|..    ..|+.+..+ |+  +.+
T Consensus        48 ~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~---v~Lves~~KK~~FL~~v~~~L~L~n~~i  124 (239)
T d1xdza_          48 KKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLH---VTIVDSLNKRITFLEKLSEALQLENTTF  124 (239)
T ss_dssp             HHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCE---EEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred             HHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCcc---ceeecchHHHHHHHHHHHHHhCCCCcEE
Confidence            34667665554211001122123468999999999  444444433332   3444544    355544444 55  345


Q ss_pred             eccccccCC---CCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH---HHHHHHHHHHhCCceee
Q 017983          269 YHDWCESFN---TYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE---MINKLKPVLHSLQWSTN  342 (363)
Q Consensus       269 ~~d~~e~~l---pfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~l~~~l~W~~~  342 (363)
                      ++...|...   .+...||+|+|. +|.      .+..++.=....|+|||.+++.-...   .++..++..+.+.++..
T Consensus       125 ~~~R~E~~~~~~~~~~~~D~v~sR-Ava------~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~  197 (239)
T d1xdza_         125 CHDRAETFGQRKDVRESYDIVTAR-AVA------RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE  197 (239)
T ss_dssp             EESCHHHHTTCTTTTTCEEEEEEE-CCS------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred             EeehhhhccccccccccceEEEEh-hhh------CHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEE
Confidence            565555422   234789999986 444      35668888999999999999985544   45555555666666643


Q ss_pred             ee----------cceEEEEEeccC
Q 017983          343 IY----------HDQFLVGKKGFW  356 (363)
Q Consensus       343 ~~----------~~~~li~~K~~w  356 (363)
                      ..          ...+++.+|.-=
T Consensus       198 ~v~~~~lp~~~~~r~lv~i~K~~~  221 (239)
T d1xdza_         198 NIHSFKLPIEESDRNIMVIRKIKN  221 (239)
T ss_dssp             EEEEEECTTTCCEEEEEEEEECSC
T ss_pred             EEEEEeCCCCCCCEEEEEEEECCC
Confidence            21          235777877543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.74  E-value=1.1e-05  Score=75.82  Aligned_cols=99  Identities=18%  Similarity=0.116  Sum_probs=62.9

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCC---CC-CCccee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNT---YP-RTYDLL  286 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lp---fp-~sFDlV  286 (363)
                      ...+|||+.||+|+|+.+++..+..   |+.+|.+ .+++.|.+-    |+    +..+...+..++.   .. +.||+|
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA~---V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGAE---VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCE---EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCCe---EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            3469999999999999999988754   6677888 777776543    32    2233332322222   13 789999


Q ss_pred             eec---cccc----cccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          287 HSS---FLLS----DVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       287 h~~---~~l~----~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++.   +.-.    .+.-...+..++..+.++|+|||.+++.
T Consensus       209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~  250 (309)
T d2igta1         209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL  250 (309)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred             EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence            984   2211    0111112344667788999999976654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=1.1e-05  Score=74.28  Aligned_cols=70  Identities=10%  Similarity=-0.079  Sum_probs=52.3

Q ss_pred             CCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEe
Q 017983            7 DEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      |+|+.|++.|++|    |+...+........ ..+++||.|++..+++|+... -..+++++.|+|||||.+++..
T Consensus        82 ~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~-~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1          82 TLSKNQHARCEQVLASIDTNRSRQVLLQGWE-DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             ESCHHHHHHHHHHHHTSCCSSCEEEEESCGG-GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cchHHHHHHHHHHHHhhccccchhhhhhhhh-hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            7899999999887    55433332222111 234799999999999998642 2579999999999999999975

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=8.5e-06  Score=74.48  Aligned_cols=72  Identities=17%  Similarity=0.359  Sum_probs=48.3

Q ss_pred             CCCCHHHHHHHHHc----CCCce-----eeeccc----CCCCCCCCCccEEEeCC-cccccccC------CCchhhhhcc
Q 017983            6 KDEHEAQIQFALER----GIPAI-----LSVIGT----QKLTFPDDAYDLIHCAR-CRVHWDAQ------GGKPLLELNR   65 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~-----~~~~~~----~~LPfpd~sFD~v~cs~-~~~~~~~~------~~~~l~E~~R   65 (363)
                      -|.|+.+|+.|+++    +....     +..++.    ..+|+ .++||+|+|.. ++.|..+.      ...+|+++.|
T Consensus        84 vD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  162 (292)
T d1xvaa_          84 VDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS  162 (292)
T ss_dssp             EESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHH
Confidence            38999999999875    32211     222222    12344 47899999965 45555431      2258999999


Q ss_pred             cccCCeEEEEEeC
Q 017983           66 ILRPGGFFIWSAT   78 (363)
Q Consensus        66 VLrPGG~~~~s~~   78 (363)
                      +|||||+|++...
T Consensus       163 ~LkpgG~li~~~~  175 (292)
T d1xvaa_         163 MVRPGGLLVIDHR  175 (292)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             HcCcCcEEEEeec
Confidence            9999999999754

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=5.6e-06  Score=75.10  Aligned_cols=76  Identities=13%  Similarity=0.034  Sum_probs=51.6

Q ss_pred             CCCCCCCCccEEEeCCcccccccC---CCchhhhhcccccCCeEEEEEeCCCCCC-------ChhhHHHHHHHHHHHhhc
Q 017983           32 KLTFPDDAYDLIHCARCRVHWDAQ---GGKPLLELNRILRPGGFFIWSATPVYRH-------DDRHRSVWNAMVNLTESM  101 (363)
Q Consensus        32 ~LPfpd~sFD~v~cs~~~~~~~~~---~~~~l~E~~RVLrPGG~~~~s~~~~~~~-------~~e~~~~~~~~~~l~~~~  101 (363)
                      ..+++.++||+|+|+.|++|.+.+   ...+|+++.|+|||||+|+++++.....       +.-..-..+.|.++.+..
T Consensus       150 ~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~a  229 (263)
T d2g72a1         150 AGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRS  229 (263)
T ss_dssp             SSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHT
T ss_pred             cCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHC
Confidence            356778899999999999888643   3578999999999999999986532210       000000124566667777


Q ss_pred             ceEEEE
Q 017983          102 CWKAVA  107 (363)
Q Consensus       102 cw~~~~  107 (363)
                      ..+.+.
T Consensus       230 Gf~v~~  235 (263)
T d2g72a1         230 GYKVRD  235 (263)
T ss_dssp             TEEEEE
T ss_pred             CCeEEE
Confidence            666544

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=0.00011  Score=64.97  Aligned_cols=128  Identities=11%  Similarity=0.089  Sum_probs=75.5

Q ss_pred             cchhHHHHHHHhhhhccccCCCCCceEEEeccccc--HHHHHhhcCCCeEEEEeecCCc----chHHH-HHhcCc--eee
Q 017983          198 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYG--GFAAALIDQPLWVMNVVPIDAP----DTLSI-IFDRGL--IGM  268 (363)
Q Consensus       198 ~~~~W~~~~~~~y~~~l~i~~~~~r~VLDvGCG~G--~faa~L~~~~v~v~~v~~~d~s----~~L~~-a~~Rgl--~~~  268 (363)
                      ....|.+.+.+...-...++   ..+|+|+|+|.|  |+..++......   ++-+|..    ..|+. +.+=|+  +.+
T Consensus        46 ~~~~~~rHi~DSl~~~~~~~---~~~ilDiGsGaG~PGi~laI~~p~~~---~~Lves~~KK~~FL~~~~~~L~L~nv~v  119 (207)
T d1jsxa_          46 PNEMLVRHILDSIVVAPYLQ---GERFIDVGTGPGLPGIPLSIVRPEAH---FTLLDSLGKRVRFLRQVQHELKLENIEP  119 (207)
T ss_dssp             --CHHHHHHHHHHHHGGGCC---SSEEEEETCTTTTTHHHHHHHCTTSE---EEEEESCHHHHHHHHHHHHHTTCSSEEE
T ss_pred             HHHHHHHHhcchHhhhhhhc---CCceeeeeccCCceeeehhhhcccce---EEEEecchHHHHHHHHHHHHcCCcceee
Confidence            34567665554221111122   248999999999  444444443333   3444544    34544 344355  456


Q ss_pred             eccccccCCCCCCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCcee
Q 017983          269 YHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST  341 (363)
Q Consensus       269 ~~d~~e~~lpfp~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~  341 (363)
                      +++..|. +....+||+|+|. +|.      .+..++.-+...|+|||.+++.-.....++++.+-  ..|+.
T Consensus       120 ~~~R~E~-~~~~~~fD~V~sR-A~~------~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~  182 (207)
T d1jsxa_         120 VQSRVEE-FPSEPPFDGVISR-AFA------SLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQV  182 (207)
T ss_dssp             EECCTTT-SCCCSCEEEEECS-CSS------SHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEE
T ss_pred             eccchhh-hccccccceehhh-hhc------CHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEE
Confidence            6666554 2222789998765 444      35668888899999999999987655555665543  35553

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.70  E-value=3.1e-06  Score=71.09  Aligned_cols=71  Identities=8%  Similarity=-0.089  Sum_probs=54.4

Q ss_pred             CCCHHHHHHHHHcC-----------------CCceeeecccCCCC-CCCCCccEEEeCCcccccccC-CCchhhhhcccc
Q 017983            7 DEHEAQIQFALERG-----------------IPAILSVIGTQKLT-FPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRIL   67 (363)
Q Consensus         7 D~~~~qvq~A~erg-----------------~p~~~~~~~~~~LP-fpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVL   67 (363)
                      |+|+.+|+.|+++.                 ....+...+...|+ ++..+||+|+|+.++++..++ ...++.++.|+|
T Consensus        49 D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~L  128 (201)
T d1pjza_          49 ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALM  128 (201)
T ss_dssp             EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhc
Confidence            89999999999872                 12234444555664 567899999999888776542 357999999999


Q ss_pred             cCCeEEEEEe
Q 017983           68 RPGGFFIWSA   77 (363)
Q Consensus        68 rPGG~~~~s~   77 (363)
                      ||||++++..
T Consensus       129 kpgG~l~l~~  138 (201)
T d1pjza_         129 PQACSGLLIT  138 (201)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            9999988863

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.66  E-value=6.8e-06  Score=75.02  Aligned_cols=92  Identities=11%  Similarity=0.077  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHHc----CCCceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCCCC
Q 017983            6 KDEHEAQIQFALER----GIPAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      -|+++.+++.|+++    |+...+...+... ++++++||+|+|.....+    ...++.++.|+|||||+|++|+-.. 
T Consensus       148 vDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~~----l~~l~~~~~~~LkpGG~lilSgil~-  221 (254)
T d2nxca1         148 VDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL----HAALAPRYREALVPGGRALLTGILK-  221 (254)
T ss_dssp             EESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH----HHHHHHHHHHHEEEEEEEEEEEEEG-
T ss_pred             EECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhcccccc----HHHHHHHHHHhcCCCcEEEEEecch-
Confidence            37888888888753    7887777666543 577899999999754433    2358899999999999999996521 


Q ss_pred             CCChhhHHHHHHHHHHHhhcceEEEEEec
Q 017983           82 RHDDRHRSVWNAMVNLTESMCWKAVARSV  110 (363)
Q Consensus        82 ~~~~e~~~~~~~~~~l~~~~cw~~~~~~~  110 (363)
                          +   .-..+.+..+...|+.+....
T Consensus       222 ----~---~~~~v~~~~~~~Gf~~~~~~~  243 (254)
T d2nxca1         222 ----D---RAPLVREAMAGAGFRPLEEAA  243 (254)
T ss_dssp             ----G---GHHHHHHHHHHTTCEEEEEEE
T ss_pred             ----h---hHHHHHHHHHHCCCEEEEEEE
Confidence                1   123566667777888776543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.65  E-value=0.00014  Score=65.09  Aligned_cols=127  Identities=10%  Similarity=0.092  Sum_probs=75.6

Q ss_pred             CCceEEEecccccHHHHHhhc---CCCeEEEEeecCCcchHHHH----HhcCc---eeeeccccccCCC-------CCCC
Q 017983          220 SVRNVMDMNASYGGFAAALID---QPLWVMNVVPIDAPDTLSII----FDRGL---IGMYHDWCESFNT-------YPRT  282 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~---~~v~v~~v~~~d~s~~L~~a----~~Rgl---~~~~~d~~e~~lp-------fp~s  282 (363)
                      +.++||.+|+++|.-+.+|+.   .+..+..+...+  +..+.|    .+-|+   +......+...++       ..++
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~--~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINK--ENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCC--HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccc--hhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            357999999999988877774   234443333322  333333    23344   3333322222232       1368


Q ss_pred             cceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEcCH--------------H----HHHHHHH----HHHhCCce
Q 017983          283 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL--------------E----MINKLKP----VLHSLQWS  340 (363)
Q Consensus       283 FDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--------------~----~~~~i~~----l~~~l~W~  340 (363)
                      ||+|+...      +.......+..+.+.|||||.+++-+..              .    ..+.|++    +...=+|.
T Consensus       137 fD~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~  210 (227)
T d1susa1         137 YDFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIE  210 (227)
T ss_dssp             BSEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBC
T ss_pred             eeEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            99999862      2345677889999999999999886531              1    1122333    33344566


Q ss_pred             eeee--cceEEEEEec
Q 017983          341 TNIY--HDQFLVGKKG  354 (363)
Q Consensus       341 ~~~~--~~~~li~~K~  354 (363)
                      ..+.  .+.++|++|-
T Consensus       211 ~~llPigDGl~i~~K~  226 (227)
T d1susa1         211 ICMLPVGDGITICRRI  226 (227)
T ss_dssp             CEEECSTTCEEEECBC
T ss_pred             EEEeecCCeeEEEEEC
Confidence            5554  6789999883

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.59  E-value=2.4e-05  Score=67.61  Aligned_cols=95  Identities=13%  Similarity=0.154  Sum_probs=61.4

Q ss_pred             CceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc---eeeeccccccCCCC---C-CCcceeee
Q 017983          221 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTY---P-RTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~d~~e~~lpf---p-~sFDlVh~  288 (363)
                      ..+|||+.||+|.++.+.+.+|+.  .|+.+|.+ ..++.+.+-    +.   +.++...+...+..   . ..||+|++
T Consensus        42 ~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          42 GGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence            459999999999999988888864  35666766 555554332    22   33333333333332   3 57999998


Q ss_pred             ccccccccccCCHHHHHHHHh--HhccCCeEEEEE
Q 017983          289 SFLLSDVTQRCDIADVAVEMD--RILRPGGYVLVQ  321 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~--RVLRPGG~lii~  321 (363)
                      .   ..+. .......|..+.  .+|+|+|.+++-
T Consensus       120 D---PPY~-~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         120 D---PPYA-KQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             C---CCGG-GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             c---hhhh-hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            6   3332 234566777764  479999988874

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=97.59  E-value=4.6e-05  Score=68.75  Aligned_cols=68  Identities=19%  Similarity=0.245  Sum_probs=46.7

Q ss_pred             HHHHHHHHHc----CCCceeeecc-cCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeC
Q 017983           10 EAQIQFALER----GIPAILSVIG-TQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        10 ~~qvq~A~er----g~p~~~~~~~-~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      ..+++.|+++    |+...+.... ...-|.| .+||+|+++.++|+|.+.. ..+|+++.|+|||||+|++...
T Consensus       114 p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         114 AGPAERARRRFADAGLADRVTVAEGDFFKPLP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hHHHHHHHHHHhhcCCcceeeeeeeecccccc-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            3455555433    5543333222 2223555 4699999999999998643 4679999999999999999865

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.53  E-value=2.4e-05  Score=67.44  Aligned_cols=71  Identities=14%  Similarity=0.046  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHHc----CCC---ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP---AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p---~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.+++.|+++    ++.   +.+...+... ++++++||+|+|....++..+....++.++.|+|||||.+++...
T Consensus        81 D~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  158 (194)
T d1dusa_          81 DINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             ESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence            8899999999874    443   3444455544 788999999999877654433224689999999999999988754

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=5.3e-05  Score=69.99  Aligned_cols=67  Identities=12%  Similarity=0.100  Sum_probs=51.9

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      ++|+.|++.|.+|    |..  +.+...+...+|   ++||.|++-...+|+... ...+++++.|+|||||.+++.
T Consensus        92 t~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_          92 TLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             ESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             eccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence            5789999999876    333  344455555554   689999999999998642 257999999999999999985

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.47  E-value=2.8e-05  Score=69.72  Aligned_cols=65  Identities=17%  Similarity=0.231  Sum_probs=45.4

Q ss_pred             HHHHHHH----cCCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeC
Q 017983           12 QIQFALE----RGIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        12 qvq~A~e----rg~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      +++.|++    .|+.  +.+...+... +.| .+||+|+++.++|||++.. ..+|+++.|+|||||+|++...
T Consensus       115 ~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         115 TVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             HHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHhhcccchhhccccchh-hcc-cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            4444443    3554  3333334322 333 5799999999999997542 4689999999999999999754

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.47  E-value=0.00012  Score=67.87  Aligned_cols=99  Identities=12%  Similarity=0.152  Sum_probs=61.1

Q ss_pred             CCceEEEecccccHHHHHhhc----CCCeEEEEeecCCc-chHHHHHhc----Cc-eeee-ccccccCCCCC-CCcceee
Q 017983          220 SVRNVMDMNASYGGFAAALID----QPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMY-HDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~----~~v~v~~v~~~d~s-~~L~~a~~R----gl-~~~~-~d~~e~~lpfp-~sFDlVh  287 (363)
                      ...+|||.+||+|+|..++.+    +...-..+.++|.. .++..|...    +. .... ++   .....+ ..||+|+
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d---~~~~~~~~~fD~vi  193 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD---GLANLLVDPVDVVI  193 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESC---TTSCCCCCCEEEEE
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccc---cccccccccccccc
Confidence            456899999999999887753    23334467888877 566655433    21 2222 23   123345 8999999


Q ss_pred             eccccccccc--------------cCCH-HHHHHHHhHhccCCeEEEEE
Q 017983          288 SSFLLSDVTQ--------------RCDI-ADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       288 ~~~~l~~~~~--------------~~~~-~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++==+.....              ..+. ..++..+.+.|+|||++++-
T Consensus       194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I  242 (328)
T d2f8la1         194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  242 (328)
T ss_dssp             EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEE
Confidence            9833321100              0011 22577899999999987665

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.45  E-value=2.4e-05  Score=69.01  Aligned_cols=72  Identities=10%  Similarity=-0.079  Sum_probs=48.5

Q ss_pred             CCCCHHHHHHHHHc--CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            6 KDEHEAQIQFALER--GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         6 ~D~~~~qvq~A~er--g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      -|.|+.+++.|+++  ..+ +.....++...++++..||.|.+..+.++.+.+...++.|+.|+|||||+|+++.
T Consensus        86 vDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_          86 VEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             ECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            38999999988766  233 3444455666666666666554433323333335679999999999999999974

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00041  Score=62.50  Aligned_cols=120  Identities=10%  Similarity=0.004  Sum_probs=73.4

Q ss_pred             CCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhc----Cc---eeeec-cccccC----CCCC-CCc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYH-DWCESF----NTYP-RTY  283 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~R----gl---~~~~~-d~~e~~----lpfp-~sF  283 (363)
                      ....+|||+|||+|..+..|+.+ +-+  +++++|.+ +++++|.+-    ++   +..++ ++-...    .... .+|
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~--~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~f  137 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGW--YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIY  137 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCc--cccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCce
Confidence            44579999999999988888764 222  57888988 778776554    22   22232 111111    1123 689


Q ss_pred             ceeeeccccccccc--------------c------------------CCHHHHHHHHhHhccCCeEEEEEcC-HHHHHHH
Q 017983          284 DLLHSSFLLSDVTQ--------------R------------------CDIADVAVEMDRILRPGGYVLVQDT-LEMINKL  330 (363)
Q Consensus       284 DlVh~~~~l~~~~~--------------~------------------~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i  330 (363)
                      |+|+|+==+..-.+              +                  .-+.+++.|..+.++..|++...-. .+.+..|
T Consensus       138 D~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i  217 (250)
T d2h00a1         138 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPL  217 (250)
T ss_dssp             SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHH
T ss_pred             eEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHH
Confidence            99999732221000              0                  0145677888899999998854332 3456677


Q ss_pred             HHHHHhCCce
Q 017983          331 KPVLHSLQWS  340 (363)
Q Consensus       331 ~~l~~~l~W~  340 (363)
                      +++++.....
T Consensus       218 ~~~L~~~g~~  227 (250)
T d2h00a1         218 KEELRIQGVP  227 (250)
T ss_dssp             HHHHHHTTCS
T ss_pred             HHHHHHcCCC
Confidence            7777776653

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.43  E-value=0.0002  Score=62.76  Aligned_cols=72  Identities=24%  Similarity=0.364  Sum_probs=54.2

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCC--CCCCCccEEEeCCcccccccCC--------CchhhhhcccccCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLT--FPDDAYDLIHCARCRVHWDAQG--------GKPLLELNRILRPG   70 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LP--fpd~sFD~v~cs~~~~~~~~~~--------~~~l~E~~RVLrPG   70 (363)
                      -|.++..+..|.++    |++ +.+...++..|+  |+++++|.|++.. -.||+...        ..+|.++.|+||||
T Consensus        61 id~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f-PdPw~K~~h~krRl~~~~~l~~~~~~Lkpg  139 (204)
T d1yzha1          61 IDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF-SDPWPKKRHEKRRLTYKTFLDTFKRILPEN  139 (204)
T ss_dssp             EESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-CCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred             EeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc-cccccchhhhhhhhhHHHHHHHHHHhCCCC
Confidence            47788888877654    777 555666687776  8999999998754 44665321        35899999999999


Q ss_pred             eEEEEEeC
Q 017983           71 GFFIWSAT   78 (363)
Q Consensus        71 G~~~~s~~   78 (363)
                      |.|.+.+.
T Consensus       140 G~l~i~TD  147 (204)
T d1yzha1         140 GEIHFKTD  147 (204)
T ss_dssp             CEEEEEES
T ss_pred             cEEEEEEC
Confidence            99998754

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.40  E-value=3e-05  Score=66.90  Aligned_cols=98  Identities=17%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeecccccccc-
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT-  296 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~-  296 (363)
                      ...+|||.|||+|+|..++.+......++.+.|.. ..+..+.  ...-...+..   ...+ ..||+|+++--+.... 
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~--~~~~~~~~~~---~~~~~~~fd~ii~npP~~~~~~   93 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--WAEGILADFL---LWEPGEAFDLILGNPPYGIVGE   93 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--TEEEEESCGG---GCCCSSCEEEEEECCCCCCBSC
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc--cceeeeeehh---ccccccccceecccCccccccc
Confidence            34699999999999988887531111134445544 2221111  1111122321   2223 8999999875543211 


Q ss_pred             ------------------------ccCCH-HHHHHHHhHhccCCeEEEEEc
Q 017983          297 ------------------------QRCDI-ADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       297 ------------------------~~~~~-~~~L~Em~RVLRPGG~lii~D  322 (363)
                                              ...++ ..++....+.|||||++++--
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~  144 (223)
T d2ih2a1          94 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV  144 (223)
T ss_dssp             TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence                                    01111 245677889999999987753

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.39  E-value=0.0002  Score=66.83  Aligned_cols=134  Identities=14%  Similarity=0.193  Sum_probs=77.8

Q ss_pred             CCCceEEEecccccHHHHHhhcCC-CeEEEEeecCCc-chHHHHHhc------Cc-----eeeeccccccCCCCC-CCcc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDR------GL-----IGMYHDWCESFNTYP-RTYD  284 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~-v~v~~v~~~d~s-~~L~~a~~R------gl-----~~~~~d~~e~~lpfp-~sFD  284 (363)
                      ...++||.+|.|.|+.+.++.+.. +.  .|+.++.. +.++++.+.      +.     +.++.+.+-.++.-. +.||
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~--~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVE--KAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCC--EEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcc--eEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            346899999999999999998753 32  34555555 566666543      11     233333333333323 8899


Q ss_pred             eeeeccccccccc---cCC--HHHHHHHHhHhccCCeEEEEEc------CHHHHHHHHHHHHhCCceeeee-------c-
Q 017983          285 LLHSSFLLSDVTQ---RCD--IADVAVEMDRILRPGGYVLVQD------TLEMINKLKPVLHSLQWSTNIY-------H-  345 (363)
Q Consensus       285 lVh~~~~l~~~~~---~~~--~~~~L~Em~RVLRPGG~lii~D------~~~~~~~i~~l~~~l~W~~~~~-------~-  345 (363)
                      +|++... ..+..   ...  -.++++.+.|.|||||.++..-      ..++...+.+..++.=..+...       . 
T Consensus       154 vIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~  232 (312)
T d1uira_         154 VVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFL  232 (312)
T ss_dssp             EEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTE
T ss_pred             EEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCC
Confidence            9996532 11110   001  1578999999999999998742      2234555655444433333332       1 


Q ss_pred             -ceEEEEEecc
Q 017983          346 -DQFLVGKKGF  355 (363)
Q Consensus       346 -~~~li~~K~~  355 (363)
                       -.++++.|..
T Consensus       233 ~w~f~~aS~~~  243 (312)
T d1uira_         233 NFGFLLASDAF  243 (312)
T ss_dssp             EEEEEEEESSS
T ss_pred             CCEeEEEeCCC
Confidence             2367777753

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.36  E-value=4.1e-05  Score=65.56  Aligned_cols=68  Identities=18%  Similarity=0.135  Sum_probs=56.1

Q ss_pred             CCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++.+++.|+++    |+.  +.+...++..++++..+||+|+|.....++    ..++.++.++|||||+++++..
T Consensus        62 D~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~~~----~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          62 DRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL----QEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTTCH----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccccc----hHHHHHHHHHhCcCCEEEEEee
Confidence            7899999999875    663  566777788889999999999998765443    3589999999999999999865

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.32  E-value=0.00016  Score=65.48  Aligned_cols=84  Identities=12%  Similarity=0.203  Sum_probs=57.9

Q ss_pred             CCCCHHHHHHHHHc-----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER-----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er-----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.++..++.|+++     +.. +.+...+.... +++++||+|++.     .+ ++..+|.++.|+|||||+|++..|-
T Consensus       116 vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld-----~p-~p~~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         116 VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD-----IP-DPWNHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC-----CS-CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             EECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec-----CC-chHHHHHHHHHhcCCCceEEEEeCC
Confidence            37889999999875     222 44555555444 678999999974     22 3457999999999999999999883


Q ss_pred             CCCCChhhHHHHHHHHHHHhhcceE
Q 017983           80 VYRHDDRHRSVWNAMVNLTESMCWK  104 (363)
Q Consensus        80 ~~~~~~e~~~~~~~~~~l~~~~cw~  104 (363)
                      +       .+..+.++.|.+ -.|.
T Consensus       189 i-------~Qv~~~~~~l~~-~gf~  205 (250)
T d1yb2a1         189 F-------DQSEKTVLSLSA-SGMH  205 (250)
T ss_dssp             H-------HHHHHHHHHSGG-GTEE
T ss_pred             c-------ChHHHHHHHHHH-CCCc
Confidence            2       244455555543 3454

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.32  E-value=0.00013  Score=65.04  Aligned_cols=101  Identities=11%  Similarity=0.148  Sum_probs=65.8

Q ss_pred             CCCHHHHHHHHHc--CCCceeeecc--cCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC--C
Q 017983            7 DEHEAQIQFALER--GIPAILSVIG--TQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP--V   80 (363)
Q Consensus         7 D~~~~qvq~A~er--g~p~~~~~~~--~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~--~   80 (363)
                      |.|+.+++.|.++  ..++...+.+  ....+|.+..||++++.. .+++.++...++.++.|+|||||+++++...  .
T Consensus       105 DiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~-~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~  183 (230)
T d1g8sa_         105 EYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYE-DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI  183 (230)
T ss_dssp             ESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEE-CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGT
T ss_pred             eCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeec-cccchHHHHHHHHHHHHhcccCceEEEEeecccc
Confidence            8899999999887  3343333333  333467888888876643 3444445667899999999999999998331  1


Q ss_pred             CCCChhhHHHHHHHHHHHhhcceEEEEEe
Q 017983           81 YRHDDRHRSVWNAMVNLTESMCWKAVARS  109 (363)
Q Consensus        81 ~~~~~e~~~~~~~~~~l~~~~cw~~~~~~  109 (363)
                      .... ......+...+..+.-..+.+...
T Consensus       184 d~~~-~~~~~~~e~~~~L~~aGF~ive~i  211 (230)
T d1g8sa_         184 DVTK-DPKEIFKEQKEILEAGGFKIVDEV  211 (230)
T ss_dssp             CSSS-CHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             CCCC-CHHHHHHHHHHHHHHcCCEEEEEe
Confidence            1111 122445566666667778777543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=7.9e-05  Score=65.57  Aligned_cols=66  Identities=15%  Similarity=0.030  Sum_probs=49.9

Q ss_pred             CCCCHHHHHHHHHc----CCCce-eeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            6 KDEHEAQIQFALER----GIPAI-LSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p~~-~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      -|.++.+++.|.++    ++... +...++...++.+++||+|+|..+..+.       ..++.|+|||||++++...
T Consensus       106 id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~-------p~~l~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         106 VEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEV-------PETWFTQLKEGGRVIVPIN  176 (213)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSCC-------CHHHHHHEEEEEEEEEEBC
T ss_pred             eecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhccHHHh-------HHHHHHhcCCCcEEEEEEC
Confidence            37888999999876    55544 4444577788888999999998766543       3467899999999998643

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=4.9e-05  Score=65.68  Aligned_cols=95  Identities=17%  Similarity=0.175  Sum_probs=50.2

Q ss_pred             CceEEEecccccHHHHHhhcC---CCeEEEEeecCCcchHHHHHhcCce---eeecccc---ccCCCCC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAPDTLSIIFDRGLI---GMYHDWC---ESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~~---~v~v~~v~~~d~s~~L~~a~~Rgl~---~~~~d~~---e~~lpfp-~sFDlVh~~~  290 (363)
                      ..+|||+||++|+|..++.++   ...++   ++|...|-.   -.|..   +.+.+..   ....-+. ..||+|++..
T Consensus        23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~---~vDl~~~~~---i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~   96 (180)
T d1ej0a_          23 GMTVVDLGAAPGGWSQYVVTQIGGKGRII---ACDLLPMDP---IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM   96 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEE---EEESSCCCC---CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEEeccCCcceEEEEeeccccceEE---Eeecccccc---cCCceEeecccccchhhhhhhhhccCcceeEEEecc
Confidence            469999999999999887753   12232   223221100   01110   0000000   0000123 6799999886


Q ss_pred             ccccc--------cccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          291 LLSDV--------TQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       291 ~l~~~--------~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +..--        ....-...+|.=..++|||||.+++-
T Consensus        97 ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_          97 APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence            65421        11111234555668999999999984

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.87  E-value=0.00052  Score=62.75  Aligned_cols=100  Identities=14%  Similarity=0.124  Sum_probs=61.5

Q ss_pred             CCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc-----C-----------ceeeeccccccCCCCCC
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR-----G-----------LIGMYHDWCESFNTYPR  281 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R-----g-----------l~~~~~d~~e~~lpfp~  281 (363)
                      .+.++||-+|+|.|+.+.++.+++..-  |+.++.. ++++++.+-     +           -+.++.+.+...+.=.+
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~--v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDE--VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSE--EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCce--EEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            446899999999999999988876532  4444554 566666531     1           02223222222221127


Q ss_pred             CcceeeeccccccccccCC--HHHHHHHHhHhccCCeEEEEE
Q 017983          282 TYDLLHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +||+|++.. +........  -..+++.+.|.|+|||.++..
T Consensus       149 ~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         149 GFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             CEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            899999753 332211111  157899999999999999884

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=6.6e-05  Score=70.31  Aligned_cols=70  Identities=11%  Similarity=0.038  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHHc--------------CCCceeeecccCCCCCCCCCcc--EEEeCCcccccccCCCchhhhhcccccCC
Q 017983            7 DEHEAQIQFALER--------------GIPAILSVIGTQKLTFPDDAYD--LIHCARCRVHWDAQGGKPLLELNRILRPG   70 (363)
Q Consensus         7 D~~~~qvq~A~er--------------g~p~~~~~~~~~~LPfpd~sFD--~v~cs~~~~~~~~~~~~~l~E~~RVLrPG   70 (363)
                      |.++.+++.|.+.              ..++.+...++..+||.+..||  +|++. ...++. +...+|.|+.|+||||
T Consensus       182 d~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~-~~~f~~-~~~~~l~e~~r~LKpG  259 (328)
T d1nw3a_         182 EKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVN-NFAFGP-EVDHQLKERFANMKEG  259 (328)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEEC-CTTTCH-HHHHHHHHHHTTCCTT
T ss_pred             eCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccCcceEEEEc-ceecch-HHHHHHHHHHHhCCCC
Confidence            5677777777542              2346778888999999998885  45553 444544 3457999999999999


Q ss_pred             eEEEEEeC
Q 017983           71 GFFIWSAT   78 (363)
Q Consensus        71 G~~~~s~~   78 (363)
                      |+++.+.+
T Consensus       260 g~iv~~~~  267 (328)
T d1nw3a_         260 GRIVSSKP  267 (328)
T ss_dssp             CEEEESSC
T ss_pred             cEEEEecc
Confidence            99987643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0013  Score=61.45  Aligned_cols=89  Identities=8%  Similarity=0.005  Sum_probs=57.1

Q ss_pred             CCCCHHHHHHHHHc--------------C--CCceeeecccCCC--CCCCCCccEEEeCCcccccccCCCchhhhhcccc
Q 017983            6 KDEHEAQIQFALER--------------G--IPAILSVIGTQKL--TFPDDAYDLIHCARCRVHWDAQGGKPLLELNRIL   67 (363)
Q Consensus         6 ~D~~~~qvq~A~er--------------g--~p~~~~~~~~~~L--Pfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVL   67 (363)
                      -|.++.+++.|++.              +  -.+.+...+....  .+++.+||.|+.-     .+ ++..+|.++.|+|
T Consensus       129 ~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD-----~p-~P~~~l~~~~~~L  202 (324)
T d2b25a1         129 FEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALD-----ML-NPHVTLPVFYPHL  202 (324)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEEC-----SS-STTTTHHHHGGGE
T ss_pred             ecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEeec-----Cc-CHHHHHHHHHHhc
Confidence            47888899988764              1  1133444444444  3578899999863     22 2446999999999


Q ss_pred             cCCeEEEEEeCCCCCCChhhHHHHHHHHHHHh-hcceEEEE
Q 017983           68 RPGGFFIWSATPVYRHDDRHRSVWNAMVNLTE-SMCWKAVA  107 (363)
Q Consensus        68 rPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~-~~cw~~~~  107 (363)
                      ||||.|++-.|-+.       ++++.++.|-. .+.|..+.
T Consensus       203 KpGG~lv~~~P~i~-------Qv~~~~~~l~~~~~~f~~i~  236 (324)
T d2b25a1         203 KHGGVCAVYVVNIT-------QVIELLDGIRTCELALSCEK  236 (324)
T ss_dssp             EEEEEEEEEESSHH-------HHHHHHHHHHHHTCCEEEEE
T ss_pred             cCCCEEEEEeCCHH-------HHHHHHHHHHHcCCCceeeE
Confidence            99999999888543       66676776643 56786654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.84  E-value=0.00081  Score=61.15  Aligned_cols=68  Identities=13%  Similarity=0.107  Sum_probs=50.4

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeCC
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSATP   79 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~~   79 (363)
                      -|.|+.+++.|++.    |+. ......+--...|+...||.|+..     .+ ++..+|.++.|+|||||.|++..|-
T Consensus       134 vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d-----~p-~p~~~l~~~~~~LKpGG~lv~~~P~  206 (266)
T d1o54a_         134 YEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLD-----VP-DPWNYIDKCWEALKGGGRFATVCPT  206 (266)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEEC-----CS-CGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             EeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEec-----CC-CHHHHHHHHHhhcCCCCEEEEEeCc
Confidence            48899999999876    543 333333333456888999999753     33 3567999999999999999998883

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.76  E-value=0.0012  Score=56.84  Aligned_cols=123  Identities=14%  Similarity=0.144  Sum_probs=79.0

Q ss_pred             ccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCc--eeeecccccc---CC-CCC-CCcc
Q 017983          213 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCES---FN-TYP-RTYD  284 (363)
Q Consensus       213 ~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl--~~~~~d~~e~---~l-pfp-~sFD  284 (363)
                      .|.+.++  .+++|..+|.|+.+.+|++.+..   |.+.|.. .++..+.++-.  +..++..+..   .+ .+. +.+|
T Consensus        13 ~l~~~~g--~~~vD~T~G~GGhs~~iL~~~~~---viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vd   87 (182)
T d1wg8a2          13 LLAVRPG--GVYVDATLGGAGHARGILERGGR---VIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVD   87 (182)
T ss_dssp             HHTCCTT--CEEEETTCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred             hcCCCCC--CEEEEeCCCCcHHHHHHhcccCc---EEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccC
Confidence            3444444  58999999999999999987654   5677766 67877776532  3344432221   12 245 7899


Q ss_pred             eeeecccccccc--ccC----CHHHHHHHHhHhccCCeEEEEEcCHHH-HHHHHHHHHhCCce
Q 017983          285 LLHSSFLLSDVT--QRC----DIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLHSLQWS  340 (363)
Q Consensus       285 lVh~~~~l~~~~--~~~----~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~~l~W~  340 (363)
                      .|+....++..+  +..    .....|.....+|+|||.+++...... -..++.+.+.-.++
T Consensus        88 gIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k  150 (182)
T d1wg8a2          88 GILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLK  150 (182)
T ss_dssp             EEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSE
T ss_pred             EEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccce
Confidence            999988777432  111    234567777899999999998865442 23455555443343

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=96.69  E-value=0.0011  Score=56.48  Aligned_cols=94  Identities=10%  Similarity=0.087  Sum_probs=57.0

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc----Cc----eeeeccccccCCC--CC-CCcceeeec
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IGMYHDWCESFNT--YP-RTYDLLHSS  289 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R----gl----~~~~~d~~e~~lp--fp-~sFDlVh~~  289 (363)
                      .+|||+-||+|.++.+.+.+|+.  .|+-+|.+ +.+..+.+-    +.    ..+..+.+...+-  .. ..||+|++.
T Consensus        45 ~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD  122 (183)
T d2ifta1          45 SECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  122 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             ceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence            48999999999999999999875  35666766 444333321    22    1112121222232  33 569999986


Q ss_pred             cccccccccCCHHHHHHHHh--HhccCCeEEEEE
Q 017983          290 FLLSDVTQRCDIADVAVEMD--RILRPGGYVLVQ  321 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~--RVLRPGG~lii~  321 (363)
                         ..+.. ...+.+|.-+.  .+|+|+|.+++-
T Consensus       123 ---PPY~~-~~~~~~l~~l~~~~~L~~~~liiiE  152 (183)
T d2ifta1         123 ---PPFHF-NLAEQAISLLCENNWLKPNALIYVE  152 (183)
T ss_dssp             ---CCSSS-CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ---hhHhh-hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence               33322 12344554443  589999999884

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.00057  Score=63.29  Aligned_cols=102  Identities=7%  Similarity=0.006  Sum_probs=61.6

Q ss_pred             CCCceEEEecccccHHHHHhhcCC-CeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCCCCC-CCcce
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFNTYP-RTYDL  285 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~-v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~lpfp-~sFDl  285 (363)
                      .+.++||=+|.|.|+.+.++.+++ +.-  |+.++.. .+++++.+--      +    +.++.+.+..++--. +.||+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~--i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEK--AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSE--EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCce--EEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            346899999999999999999864 433  3344444 4555554421      1    223333233333323 88999


Q ss_pred             eeeccccccccccC--CHHHHHHHHhHhccCCeEEEEEc
Q 017983          286 LHSSFLLSDVTQRC--DIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       286 Vh~~~~l~~~~~~~--~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      |++...-.......  --..++..+.|.|+|||.++..-
T Consensus       166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            99763221111101  12579999999999999999853

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00057  Score=60.45  Aligned_cols=65  Identities=20%  Similarity=0.182  Sum_probs=48.7

Q ss_pred             CCCHHHHHHHHHc----CC------CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFALER----GI------PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A~er----g~------p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      |.++..++.|+++    +.      ...+...++..++++++.||+|++..+..+       ...++.++|||||++++.
T Consensus       108 e~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~-------ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         108 DHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPV-------VPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             ESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSS-------CCHHHHHTEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhhhhcchhh-------cCHHHHhhcCCCcEEEEE
Confidence            6788888888654    21      234455667788899999999999866543       345788999999999996


Q ss_pred             eC
Q 017983           77 AT   78 (363)
Q Consensus        77 ~~   78 (363)
                      ..
T Consensus       181 v~  182 (224)
T d1i1na_         181 VG  182 (224)
T ss_dssp             ES
T ss_pred             Ec
Confidence            54

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.53  E-value=0.0038  Score=55.25  Aligned_cols=98  Identities=9%  Similarity=0.057  Sum_probs=60.8

Q ss_pred             CCCCHHHHHHHHHc--CCCceee-ecc---cCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC-
Q 017983            6 KDEHEAQIQFALER--GIPAILS-VIG---TQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT-   78 (363)
Q Consensus         6 ~D~~~~qvq~A~er--g~p~~~~-~~~---~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~-   78 (363)
                      -|.++.+++.|+++  ..+.... ..+   .+.+++....||+|++..   +.+++...++.++.|+|||||+++++.. 
T Consensus       104 VD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~---~~~~~~~~~l~~~~~~LkpgG~lvi~~ka  180 (227)
T d1g8aa_         104 IEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV---AQPTQAKILIDNAEVYLKRGGYGMIAVKS  180 (227)
T ss_dssp             EESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC---CSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             EeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEc---cccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence            37899999998876  3343332 223   244566678899998752   2233345799999999999999999742 


Q ss_pred             -CCCCCChhhHHHHHHHHHHHhhcceEEEEE
Q 017983           79 -PVYRHDDRHRSVWNAMVNLTESMCWKAVAR  108 (363)
Q Consensus        79 -~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~  108 (363)
                       ... ...+...+.+.++.+.+. .++.+..
T Consensus       181 ~~~~-~~~~~~~v~~~v~~l~~~-gf~iie~  209 (227)
T d1g8aa_         181 RSID-VTKEPEQVFREVERELSE-YFEVIER  209 (227)
T ss_dssp             GGTC-TTSCHHHHHHHHHHHHHT-TSEEEEE
T ss_pred             CccC-CCCCHHHHHHHHHHHHHc-CCEEEEE
Confidence             111 111122445566666544 5666543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.48  E-value=0.00094  Score=62.33  Aligned_cols=100  Identities=10%  Similarity=0.087  Sum_probs=60.7

Q ss_pred             CCCceEEEecccccHHHHHhhcCC-CeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCCCCC-CCcce
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFNTYP-RTYDL  285 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~~-v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~lpfp-~sFDl  285 (363)
                      .+.++||-+|-|.|+.++++.+++ +.  .|+.++.. +.++++.+--      +    +.++.+.+..++--. +.||+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~--~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDv  182 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVE--KVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV  182 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCC--EEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcc--eEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence            346899999999999999999864 33  35555555 5666665421      0    222222222223223 88999


Q ss_pred             eeeccccccccccCC--HHHHHHHHhHhccCCeEEEEE
Q 017983          286 LHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       286 Vh~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |++...-. ......  -..++..+.|.|+|||.++..
T Consensus       183 II~D~~dp-~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         183 IITDSSDP-VGPAESLFGQSYYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             EEECCC--------------HHHHHHHHEEEEEEEEEE
T ss_pred             EEEcCCCC-CCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence            99863322 111111  156889999999999999986

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.47  E-value=0.0014  Score=59.46  Aligned_cols=109  Identities=15%  Similarity=0.085  Sum_probs=60.5

Q ss_pred             ceEEEecccccHHHHHhhcCCCeEEEEeecCC----c--chHHHHHhcCceeeeccccccCCC-CC-CCcceeeeccccc
Q 017983          222 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDA----P--DTLSIIFDRGLIGMYHDWCESFNT-YP-RTYDLLHSSFLLS  293 (363)
Q Consensus       222 r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~----s--~~L~~a~~Rgl~~~~~d~~e~~lp-fp-~sFDlVh~~~~l~  293 (363)
                      .+|+|+|||.|+++-.++.+. .++.+.+.+.    +  .+....+.-+++....   +...- .+ ...|+|+|..+-+
T Consensus        68 ~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~---~~dv~~l~~~~~D~vlcDm~es  143 (257)
T d2p41a1          68 GKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQS---GVDVFFIPPERCDTLLCDIGES  143 (257)
T ss_dssp             EEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEEC---SCCTTTSCCCCCSEEEECCCCC
T ss_pred             CeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccchh---hhhHHhcCCCcCCEEEeeCCCC
Confidence            479999999999999998763 2334444433    2  1111111112222111   11122 24 8899999986532


Q ss_pred             ccccc----CCHHHHHHHHhHhccCCeEEEEEc----CHHHHHHHHHHHH
Q 017983          294 DVTQR----CDIADVAVEMDRILRPGGYVLVQD----TLEMINKLKPVLH  335 (363)
Q Consensus       294 ~~~~~----~~~~~~L~Em~RVLRPGG~lii~D----~~~~~~~i~~l~~  335 (363)
                       -.+.    ....++|.=+.+.|+|||.|++--    ..++++.++.+-.
T Consensus       144 -s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~  192 (257)
T d2p41a1         144 -SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR  192 (257)
T ss_dssp             -CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred             -CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHH
Confidence             1111    011245555568899999998863    3456666655543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00092  Score=61.49  Aligned_cols=99  Identities=14%  Similarity=0.164  Sum_probs=60.9

Q ss_pred             CCceEEEecccccHHHHHhhcCC-CeEEEEeecCCc-chHHHHHhcC----------ceeeeccccccCCCCC-CCccee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDRG----------LIGMYHDWCESFNTYP-RTYDLL  286 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~-v~v~~v~~~d~s-~~L~~a~~Rg----------l~~~~~d~~e~~lpfp-~sFDlV  286 (363)
                      ..++||=+|-|.|+.+..+.+++ +.  .++.++.. +.++++.+--          -+.++.+.+..++--. ++||+|
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~--~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVE--SVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcc--eeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            45899999999999999999863 43  34444444 4566554321          1233333333333323 889999


Q ss_pred             eeccccccccccCCH--HHHHHHHhHhccCCeEEEEE
Q 017983          287 HSSFLLSDVTQRCDI--ADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       287 h~~~~l~~~~~~~~~--~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++.. +........+  ..+++.+.|.|+|||.+++.
T Consensus       156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         156 ITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             EEEC-C-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            9863 3322111111  35799999999999999985

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.025  Score=52.00  Aligned_cols=111  Identities=21%  Similarity=0.286  Sum_probs=69.1

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHh----cCc--eeeeccccccCCC---CC-CCcceeee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IGMYHDWCESFNT---YP-RTYDLLHS  288 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~----Rgl--~~~~~d~~e~~lp---fp-~sFDlVh~  288 (363)
                      +..+|||+-||+|.|+..|+++...|   ++++.+ .+++.|.+    -|+  +..++...+..++   .. ..||+|+.
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~~~~V---~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vil  288 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQAASV---VGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  288 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTSSEE---EEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             CCceEEEecccccccchhccccccEE---EeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEe
Confidence            34699999999999999999876554   455555 44443332    243  2233332333333   33 77999887


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH-HHHHHHHHHHhCCcee
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWST  341 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~  341 (363)
                      .      +.+.++..++.++.+ ++|.-.++||=... ....++.|.+. .|+.
T Consensus       289 D------PPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~~~-gy~l  334 (358)
T d1uwva2         289 D------PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKA-GYTI  334 (358)
T ss_dssp             C------CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHHT-TCEE
T ss_pred             C------CCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHC-CCeE
Confidence            5      345555667777776 48999999984444 44556665543 3543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.33  E-value=0.00055  Score=59.04  Aligned_cols=45  Identities=18%  Similarity=0.351  Sum_probs=37.7

Q ss_pred             CCCCCCccEEEeCCcccccccC-CCchhhhhcccccCCeEEEEEeC
Q 017983           34 TFPDDAYDLIHCARCRVHWDAQ-GGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        34 Pfpd~sFD~v~cs~~~~~~~~~-~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      +.+.+.||+|.|.-+++.+... ..+++..+.+.|+|||+|++...
T Consensus       127 ~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         127 YNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             CCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             cCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            4456899999999999988753 25789999999999999998744

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.29  E-value=0.0014  Score=59.83  Aligned_cols=100  Identities=14%  Similarity=0.184  Sum_probs=62.4

Q ss_pred             CCceEEEecccccHHHHHhhcC-CCeEEEEeecCCcchHHHHHhc-----Cc-----eeeeccccccCCCCC-CCcceee
Q 017983          220 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDR-----GL-----IGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s~~L~~a~~R-----gl-----~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      ..++||-+|-|.|+.++++.++ ++.-+.++-+|. +.++++.+-     +.     +.++.+.+..++--. +.||+|+
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~-~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDG-KVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCH-HHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCH-HHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            4579999999999999999986 444333444442 355554332     11     233333333333334 8899999


Q ss_pred             eccccccccccCC--HHHHHHHHhHhccCCeEEEEE
Q 017983          288 SSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       288 ~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ... .........  -.++.+.+.|.|+|||.++..
T Consensus       154 ~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         154 VDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             ESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             EcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence            763 222211111  256899999999999999985

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.27  E-value=0.0025  Score=58.57  Aligned_cols=100  Identities=14%  Similarity=0.142  Sum_probs=62.2

Q ss_pred             CCCceEEEecccccHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcC------c----eeeeccccccCC-CCC-CCcc
Q 017983          219 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG------L----IGMYHDWCESFN-TYP-RTYD  284 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rg------l----~~~~~d~~e~~l-pfp-~sFD  284 (363)
                      .+.++||=+|-|.|+.+.++.++ ++..  ++.++.. +.++++.+--      .    +.++...+-.++ -.+ ++||
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~--i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQ--IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCE--EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCcceEEecCCchHHHHHHHhccccee--eEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence            34689999999999999999986 4433  3444444 4555554421      1    222222222233 245 7999


Q ss_pred             eeeeccccccccccCC--HHHHHHHHhHhccCCeEEEEE
Q 017983          285 LLHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       285 lVh~~~~l~~~~~~~~--~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +|+.. ++........  -..+++.+.|.|+|||.++..
T Consensus       157 vIi~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  194 (290)
T d1xj5a_         157 AVIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  194 (290)
T ss_dssp             EEEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence            99975 2222111111  156899999999999999996

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.0033  Score=57.94  Aligned_cols=61  Identities=15%  Similarity=0.061  Sum_probs=43.1

Q ss_pred             HHHcCCC--ceeeecccCCCCCCCCCccEEEeCCccccccc--CCCchhhhhcccccCCeEEEEE
Q 017983           16 ALERGIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDA--QGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus        16 A~erg~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~--~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      +.+.|..  +.+...+.+.+++|+++||+|+|.....+...  ....++.++.|+|||||.++=+
T Consensus        80 ~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~  144 (328)
T d1g6q1_          80 VELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             HHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             HHHhCccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEee
Confidence            3444654  45556678999999999999999654433322  1235788889999999998643

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.92  E-value=0.0036  Score=54.31  Aligned_cols=41  Identities=15%  Similarity=-0.038  Sum_probs=28.4

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR  263 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R  263 (363)
                      ....|||-=||+|+.+.+-.+.+-   ..++++.. +-.++|.+|
T Consensus       212 ~gd~VlDpF~GSGTT~~aa~~~~R---~~ig~El~~~y~~~a~~R  253 (256)
T d1g60a_         212 PNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFV  253 (256)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEECCCCchHHHHHHHHcCC---eEEEEeCCHHHHHHHHHH
Confidence            346999999999987666555442   24556666 667777766

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0056  Score=55.75  Aligned_cols=70  Identities=17%  Similarity=0.080  Sum_probs=45.8

Q ss_pred             CCCHHHHHHH---HHcCCC--ceeeecccCCCCCCCCCccEEEeCCcccccccC--CCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFA---LERGIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ--GGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A---~erg~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~--~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      |.|+.+++.+   .+.|..  +.+...+.+.+++++++||+|+|....++....  ...++...+|+|||||.++-+
T Consensus        65 d~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1          65 DQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             ESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             eCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence            4555554332   333433  556666789999999999999986433332221  124666678999999999754

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.45  E-value=0.0078  Score=55.08  Aligned_cols=63  Identities=11%  Similarity=0.107  Sum_probs=44.4

Q ss_pred             HHHHHcCCC--ceeeecccCCCCCCCCCccEEEeCCcccccccC--CCchhhhhcccccCCeEEEEE
Q 017983           14 QFALERGIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQ--GGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus        14 q~A~erg~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~--~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      +.+...|..  +.+...+++.++++.++||+|+|..........  ...++.++.|+|||||.++-+
T Consensus        73 ~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~  139 (316)
T d1oria_          73 KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  139 (316)
T ss_dssp             HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             hHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEee
Confidence            334445665  556667799999999999999986443332221  235788899999999998743

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.034  Score=50.31  Aligned_cols=119  Identities=16%  Similarity=0.166  Sum_probs=62.7

Q ss_pred             CCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc----chHHHHHhc-Cc--eeeeccccccCC-CCCCCcceeee
Q 017983          217 NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP----DTLSIIFDR-GL--IGMYHDWCESFN-TYPRTYDLLHS  288 (363)
Q Consensus       217 ~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s----~~L~~a~~R-gl--~~~~~d~~e~~l-pfp~sFDlVh~  288 (363)
                      ......+|||++||.|+=+..|++.... ..|++.|.+    .++....+| |+  +.+..+...... ..+..||.|.+
T Consensus        99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~  177 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL  177 (284)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEE
Confidence            3344569999999999876666542111 124455554    233333333 44  222222110001 12378999985


Q ss_pred             c------ccccccc------ccCCH-------HHHHHHHhHhccCCeEEEEEc----CHHHHHHHHHHHHh
Q 017983          289 S------FLLSDVT------QRCDI-------ADVAVEMDRILRPGGYVLVQD----TLEMINKLKPVLHS  336 (363)
Q Consensus       289 ~------~~l~~~~------~~~~~-------~~~L~Em~RVLRPGG~lii~D----~~~~~~~i~~l~~~  336 (363)
                      .      ..+..-+      +..++       .++|....+.|||||+++.+.    ..+.-+.|+.++++
T Consensus       178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~  248 (284)
T d1sqga2         178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR  248 (284)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHh
Confidence            2      3332111      01111       467788889999999999984    22333455555543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.14  E-value=0.016  Score=53.46  Aligned_cols=117  Identities=17%  Similarity=0.165  Sum_probs=63.1

Q ss_pred             CCCceEEEecccccHHHHHhh---cCCCeEEEEeecCCc-c---hHHHHHhc-Cc--eeeeccccccCCCCC-CCcceee
Q 017983          219 SSVRNVMDMNASYGGFAAALI---DQPLWVMNVVPIDAP-D---TLSIIFDR-GL--IGMYHDWCESFNTYP-RTYDLLH  287 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~---~~~v~v~~v~~~d~s-~---~L~~a~~R-gl--~~~~~d~~e~~lpfp-~sFDlVh  287 (363)
                      ....+|||++||.|+=+..|+   .....   +++.|.+ +   .+....+| |.  +..+++... .++.. ..||.|.
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~---i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~-~~~~~~~~fD~IL  190 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGV---IYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL-HIGELNVEFDKIL  190 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSE---EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG-GGGGGCCCEEEEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccc---eeeeccCHHHHHHHHHHHHHHHhhcccccccccc-ccccccccccEEE
Confidence            344699999999998544444   33333   4555665 3   33333333 43  222333222 23333 8899998


Q ss_pred             ec------ccccccc------ccCCH-------HHHHHHHhHhccCCeEEEEEc----CHHHHHHHHHHHHhCCc
Q 017983          288 SS------FLLSDVT------QRCDI-------ADVAVEMDRILRPGGYVLVQD----TLEMINKLKPVLHSLQW  339 (363)
Q Consensus       288 ~~------~~l~~~~------~~~~~-------~~~L~Em~RVLRPGG~lii~D----~~~~~~~i~~l~~~l~W  339 (363)
                      +.      .++..-+      ...++       .++|....+.|||||+++.+.    ..+.-..|+.+++...+
T Consensus       191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~  265 (313)
T d1ixka_         191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDV  265 (313)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSE
T ss_pred             EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCC
Confidence            62      2222100      00111       457788889999999999983    22333455555555443

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=95.08  E-value=0.0031  Score=56.59  Aligned_cols=66  Identities=11%  Similarity=0.144  Sum_probs=43.3

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC----ceeeeccccccCCCCC-CCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg----l~~~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      +..+||++|||+|.++..|++.+..   |.+++.. ++++...++.    -+.+++..+. .++++ ..++.|+++
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~~~~~~---v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l-~~~~~~~~~~~vv~N  100 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLAKISKQ---VTSIELDSHLFNLSSEKLKLNTRVTLIHQDIL-QFQFPNKQRYKIVGN  100 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHSSE---EEESSSSCSSSSSSSCTTTTCSEEEECCSCCT-TTTCCCSSEEEEEEE
T ss_pred             CCCeEEEECCCccHHHHHHHhhcCc---eeEeeecccchhhhhhhhhhccchhhhhhhhh-ccccccceeeeEeee
Confidence            4579999999999999999987654   4555555 5555555552    2445554333 24566 666767765

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=95.04  E-value=0.034  Score=49.09  Aligned_cols=42  Identities=14%  Similarity=0.256  Sum_probs=31.9

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhcC
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG  264 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rg  264 (363)
                      ...+||++|||+|.++..|++.+..   |++++.. ++.+...++.
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~~~~---v~avE~D~~l~~~l~~~~   63 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQRCNF---VTAIEIDHKLCKTTENKL   63 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSSE---EEEECSCHHHHHHHHHHT
T ss_pred             CCCeEEEECCCchHHHHHHHhCcCc---eEEEeeccchHHHHHHHh
Confidence            4569999999999999999987654   4555665 5666666653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=94.67  E-value=0.013  Score=51.56  Aligned_cols=64  Identities=16%  Similarity=0.081  Sum_probs=43.8

Q ss_pred             CCCHHHHHHHHHc--CCC-ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEe
Q 017983            7 DEHEAQIQFALER--GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSA   77 (363)
Q Consensus         7 D~~~~qvq~A~er--g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~   77 (363)
                      |.++..++.|.++  ... +.+...+...-..+.+.||+|++..+..+.       ..++.+.|||||++++-.
T Consensus        99 E~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~i-------p~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_          99 EINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTL-------LCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             ESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSC-------CHHHHHTEEEEEEEEEEE
T ss_pred             cccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchhhh-------hHHHHHhcCCCCEEEEEE
Confidence            6788888988877  333 444444444434456789999998665442       345567899999999853

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.64  E-value=0.059  Score=46.15  Aligned_cols=41  Identities=12%  Similarity=-0.130  Sum_probs=31.1

Q ss_pred             HHHHHHHHhHhccCCeEEEEEcCHHHHHHHHHHHHhCCcee
Q 017983          301 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST  341 (363)
Q Consensus       301 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~  341 (363)
                      +...+.|+.|||||||.+++.-.......+........|..
T Consensus        53 ~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~~   93 (256)
T d1g60a_          53 TYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIF   93 (256)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHhhhccccCcccccccCchhhhhhhhhhhccccee
Confidence            45688999999999999987766666666666666666654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.50  E-value=0.013  Score=50.10  Aligned_cols=103  Identities=15%  Similarity=-0.039  Sum_probs=61.4

Q ss_pred             ccCCCCCceEEEecccccH-HHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeecccccc------CCCCCCCcce
Q 017983          215 AINWSSVRNVMDMNASYGG-FAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCES------FNTYPRTYDL  285 (363)
Q Consensus       215 ~i~~~~~r~VLDvGCG~G~-faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~------~lpfp~sFDl  285 (363)
                      ++++|  .+||-+|||..+ +++.+++ .+..  .|+.+|.+ +.++.+.+.|...++..-.+.      .++-..-+|+
T Consensus        22 ~v~~G--~tVlV~GaG~vGl~a~~~ak~~ga~--~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~   97 (195)
T d1kola2          22 GVGPG--STVYVAGAGPVGLAAAASARLLGAA--VVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC   97 (195)
T ss_dssp             TCCTT--CEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred             CCCCC--CEEEEECcCHHHHHHHHHHHhhccc--ceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEE
Confidence            35554  599999999854 5555554 3442  24555666 789999999874433210010      0111245788


Q ss_pred             eeeccccc------cccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          286 LHSSFLLS------DVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       286 Vh~~~~l~------~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      ++-.-.+.      +..........|.++.+++||||++++.
T Consensus        98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             EEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            77443211      1111112346899999999999999876

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=94.46  E-value=0.014  Score=55.51  Aligned_cols=104  Identities=15%  Similarity=0.091  Sum_probs=57.2

Q ss_pred             CCCCceEEEecccccHHHHHhhcC----CCe--------EEEEeecCCc-chHHHHHh----cCc----eeeeccccccC
Q 017983          218 WSSVRNVMDMNASYGGFAAALIDQ----PLW--------VMNVVPIDAP-DTLSIIFD----RGL----IGMYHDWCESF  276 (363)
Q Consensus       218 ~~~~r~VLDvGCG~G~faa~L~~~----~v~--------v~~v~~~d~s-~~L~~a~~----Rgl----~~~~~d~~e~~  276 (363)
                      +....+|+|-.||+|+|.....++    ...        -.++.+.+.. .+..++.-    +|.    ....+   +..
T Consensus       160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~---~d~  236 (425)
T d2okca1         160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVC---EDS  236 (425)
T ss_dssp             CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEE---CCT
T ss_pred             CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeec---Cch
Confidence            344579999999999998776542    100        0113444544 33333322    222    11222   122


Q ss_pred             CC-CC-CCcceeeecccccccc-------------ccCCH-HHHHHHHhHhccCCeEEEEEcCH
Q 017983          277 NT-YP-RTYDLLHSSFLLSDVT-------------QRCDI-ADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       277 lp-fp-~sFDlVh~~~~l~~~~-------------~~~~~-~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      +. .+ ..||+|+++==|..-.             ...+. ..++.-+...|+|||.+++--..
T Consensus       237 l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~  300 (425)
T d2okca1         237 LEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  300 (425)
T ss_dssp             TTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             hhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence            33 45 8999999873332100             00111 24788899999999987776443

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.69  E-value=0.085  Score=46.42  Aligned_cols=41  Identities=7%  Similarity=-0.017  Sum_probs=31.3

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR  263 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R  263 (363)
                      ....|||.=||+|+.+++-.+.+-   ..++.+.+ +..++|.+|
T Consensus       250 ~gdiVlDpF~GSGTT~~AA~~lgR---~~Ig~El~~~y~~~a~~R  291 (320)
T d1booa_         250 PDDLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFR  291 (320)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGG
T ss_pred             CCCEEEecCCCCcHHHHHHHHcCC---cEEEEeCCHHHHHHHHHH
Confidence            346999999999998776665543   34566777 788889888

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.54  E-value=0.027  Score=49.09  Aligned_cols=48  Identities=31%  Similarity=0.538  Sum_probs=32.8

Q ss_pred             CCCCCCccEEEeCC----cccccccC------CCchhhhhcccccCCeEEEEEeCCCC
Q 017983           34 TFPDDAYDLIHCAR----CRVHWDAQ------GGKPLLELNRILRPGGFFIWSATPVY   81 (363)
Q Consensus        34 Pfpd~sFD~v~cs~----~~~~~~~~------~~~~l~E~~RVLrPGG~~~~s~~~~~   81 (363)
                      -+||+|+|+|+++-    ..-.|...      ....+.|+.|||||||.+++.....+
T Consensus        18 ~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~   75 (279)
T d1eg2a_          18 KLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQY   75 (279)
T ss_dssp             TSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCC
T ss_pred             hCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccc
Confidence            36799999999853    11122111      12467899999999999999765433

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=93.43  E-value=0.16  Score=45.64  Aligned_cols=99  Identities=11%  Similarity=0.034  Sum_probs=62.6

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeecccCCCCCCCCCccEEEeCCccccc---------cc-CC--------------
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGTQKLTFPDDAYDLIHCARCRVHW---------DA-QG--------------   56 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~---------~~-~~--------------   56 (363)
                      -|+|+..++.|++.    |+. +.+...+.. -+++++.||+|+|.-=.++-         .. ++              
T Consensus       138 vDis~~Al~~A~~Na~~~~~~~v~~~~~d~~-~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~  216 (274)
T d2b3ta1         138 VDRMPDAVSLAQRNAQHLAIKNIHILQSDWF-SALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADI  216 (274)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCCSEEEECCSTT-GGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHH
T ss_pred             ccchhHHHhHHHHHHHHhCcccceeeecccc-cccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHH
Confidence            48888888888754    665 444444432 26778899999995322110         00 01              


Q ss_pred             CchhhhhcccccCCeEEEEEeCCCCCCChhhHHHHHHHHHHHhhcceEEEEEecCCCc
Q 017983           57 GKPLLELNRILRPGGFFIWSATPVYRHDDRHRSVWNAMVNLTESMCWKAVARSVDSNR  114 (363)
Q Consensus        57 ~~~l~E~~RVLrPGG~~~~s~~~~~~~~~e~~~~~~~~~~l~~~~cw~~~~~~~~~~~  114 (363)
                      .+++.++.+.|+|||.+++-...-.         .+.+..+++...|..+.-..|..|
T Consensus       217 ~~i~~~a~~~L~~~G~l~lEig~~q---------~~~v~~~l~~~gf~~i~~~kDl~g  265 (274)
T d2b3ta1         217 VHIIEQSRNALVSGGFLLLEHGWQQ---------GEAVRQAFILAGYHDVETCRDYGD  265 (274)
T ss_dssp             HHHHHHHGGGEEEEEEEEEECCSSC---------HHHHHHHHHHTTCTTCCEEECTTS
T ss_pred             HHHHHHHHHhcCCCCEEEEEECchH---------HHHHHHHHHHCCCCeEEEEECCCC
Confidence            1367888999999999999754211         246778888888875544444333

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.21  E-value=0.028  Score=46.26  Aligned_cols=95  Identities=12%  Similarity=0.014  Sum_probs=55.2

Q ss_pred             ccCCCCCceEEEeccc-ccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeec--cccccCCCCCCCcceeeec
Q 017983          215 AINWSSVRNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYH--DWCESFNTYPRTYDLLHSS  289 (363)
Q Consensus       215 ~i~~~~~r~VLDvGCG-~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~--d~~e~~lpfp~sFDlVh~~  289 (363)
                      +++++  .+||-+|+| .|.+++.+++ .++.+   +.++.+ +.++.+++-|...++.  +..+..-...+.||.|+..
T Consensus        24 ~~~~g--~~vlI~GaG~vG~~a~q~ak~~G~~v---i~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~   98 (168)
T d1piwa2          24 GCGPG--KKVGIVGLGGIGSMGTLISKAMGAET---YVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC   98 (168)
T ss_dssp             TCSTT--CEEEEECCSHHHHHHHHHHHHHTCEE---EEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred             CcCCC--CEEEEECCCCcchhHHHHhhhccccc---cccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence            34444  589999998 5556666654 45544   344545 6788888877533332  1100001123789987653


Q ss_pred             cccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          290 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       290 ~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      -.-.+  .     ..+....++|||||++++.
T Consensus        99 ~~~~~--~-----~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          99 ASSLT--D-----IDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             CSCST--T-----CCTTTGGGGEEEEEEEEEC
T ss_pred             ecCCc--c-----chHHHHHHHhhccceEEEe
Confidence            21111  1     0345678999999999886

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.093  Score=47.46  Aligned_cols=68  Identities=13%  Similarity=0.180  Sum_probs=36.5

Q ss_pred             CCCceEEEecccccHHHHHhhc---CCCeEEEEeecCCc-c---hHHHHHhc-Cc--eeeeccccccCCC-CC--CCcce
Q 017983          219 SSVRNVMDMNASYGGFAAALID---QPLWVMNVVPIDAP-D---TLSIIFDR-GL--IGMYHDWCESFNT-YP--RTYDL  285 (363)
Q Consensus       219 ~~~r~VLDvGCG~G~faa~L~~---~~v~v~~v~~~d~s-~---~L~~a~~R-gl--~~~~~d~~e~~lp-fp--~sFDl  285 (363)
                      ....+|||++||.|+=+..|++   ....   |++.|.+ +   .+....+| |+  +.+.+.......+ .+  ..||.
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~---i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~  169 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGK---IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHY  169 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCce---EeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeE
Confidence            3456899999999996666654   2233   4555655 3   23322233 43  2233322222222 22  67999


Q ss_pred             eeec
Q 017983          286 LHSS  289 (363)
Q Consensus       286 Vh~~  289 (363)
                      |.+.
T Consensus       170 VL~D  173 (293)
T d2b9ea1         170 ILLD  173 (293)
T ss_dssp             EEEC
T ss_pred             Eeec
Confidence            9863

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=92.63  E-value=0.15  Score=44.68  Aligned_cols=99  Identities=17%  Similarity=0.211  Sum_probs=50.4

Q ss_pred             CceEEEecccccHHHHHhhc------CCCeEEEEeecCCcchHHHHHhcCceeeeccccccCCC---CC-CCcceeeecc
Q 017983          221 VRNVMDMNASYGGFAAALID------QPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNT---YP-RTYDLLHSSF  290 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~~------~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~d~~e~~lp---fp-~sFDlVh~~~  290 (363)
                      ..+||.+|++.|+-+..+++      .+..+.++...........-.... +..+...+.....   +. ..||+|+...
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~-I~~i~gDs~~~~~~~~l~~~~~dlIfID~  159 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMEN-ITLHQGDCSDLTTFEHLREMAHPLIFIDN  159 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTT-EEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccc-eeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence            46999999999986554432      233333332211110000001111 2223221211111   23 5789998765


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEEcCHH
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE  325 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~  325 (363)
                      . |+..+  .+  .-.+....|+|||+++|-|...
T Consensus       160 ~-H~~~~--v~--~~~~~~~lLk~GG~iIveD~i~  189 (232)
T d2bm8a1         160 A-HANTF--NI--MKWAVDHLLEEGDYFIIEDMIP  189 (232)
T ss_dssp             S-CSSHH--HH--HHHHHHHTCCTTCEEEECSCHH
T ss_pred             C-cchHH--HH--HHHHHhcccCcCCEEEEEcCCc
Confidence            4 43211  11  2225678999999999999864

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.38  E-value=0.019  Score=55.00  Aligned_cols=70  Identities=9%  Similarity=-0.043  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHcCC--------------Cceee-ecccCCCCCCCC---CccEEEeCCcccccccCCCchhhhhccccc
Q 017983            7 DEHEAQIQFALERGI--------------PAILS-VIGTQKLTFPDD---AYDLIHCARCRVHWDAQGGKPLLELNRILR   68 (363)
Q Consensus         7 D~~~~qvq~A~erg~--------------p~~~~-~~~~~~LPfpd~---sFD~v~cs~~~~~~~~~~~~~l~E~~RVLr   68 (363)
                      |.++.|++.|.++.-              ...+. ..+....++.+.   .+|+|++. +.++.. +...+|.|+.|+||
T Consensus       247 DiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~in-n~~f~~-~l~~~L~ei~r~LK  324 (406)
T d1u2za_         247 EIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVN-NFLFDE-DLNKKVEKILQTAK  324 (406)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEEC-CTTCCH-HHHHHHHHHHTTCC
T ss_pred             eCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccccccceEEEEe-cccCch-HHHHHHHHHHHhcC
Confidence            678889888876521              11111 111222232222   35677764 333333 35679999999999


Q ss_pred             CCeEEEEEeC
Q 017983           69 PGGFFIWSAT   78 (363)
Q Consensus        69 PGG~~~~s~~   78 (363)
                      |||.++.+.+
T Consensus       325 PGGrIVs~~~  334 (406)
T d1u2za_         325 VGCKIISLKS  334 (406)
T ss_dssp             TTCEEEESSC
T ss_pred             CCcEEEEecc
Confidence            9999988643

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=92.26  E-value=0.11  Score=48.69  Aligned_cols=17  Identities=35%  Similarity=0.653  Sum_probs=15.3

Q ss_pred             CC-CCcceeeeccccccc
Q 017983          279 YP-RTYDLLHSSFLLSDV  295 (363)
Q Consensus       279 fp-~sFDlVh~~~~l~~~  295 (363)
                      || +|.|++|++.++|-+
T Consensus       135 fP~~Slh~~~Ss~alHWL  152 (359)
T d1m6ex_         135 FPRNTLHFIHSSYSLMWL  152 (359)
T ss_dssp             SCTTCBSCEEEESCTTBC
T ss_pred             CCCCceEEeeehhhhhhh
Confidence            89 999999999998854

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.96  E-value=0.36  Score=38.91  Aligned_cols=93  Identities=13%  Similarity=0.043  Sum_probs=56.0

Q ss_pred             ccCCCCCceEEEeccc-ccHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeee-cccccc-------C--CCCCC
Q 017983          215 AINWSSVRNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMY-HDWCES-------F--NTYPR  281 (363)
Q Consensus       215 ~i~~~~~r~VLDvGCG-~G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~-~d~~e~-------~--lpfp~  281 (363)
                      +++++  .+||=+||| .|.+++.+++ .+..   |+.++.+ +-++.+++-|....+ .+-...       .  ..+.+
T Consensus        23 ~~~~g--~~vlV~G~G~vG~~~~~~ak~~Ga~---vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          23 GVQLG--TTVLVIGAGPIGLVSVLAAKAYGAF---VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             TCCTT--CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCCC--CEEEEEcccccchhhHhhHhhhccc---ccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccccc
Confidence            34444  589999998 4455655555 4544   4555666 678888887753222 110000       0  01234


Q ss_pred             CcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          282 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       282 sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      -+|+|+-.-.         -...+.+..+.|||||++++.
T Consensus        98 g~D~vid~~g---------~~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          98 LPNVTIDCSG---------NEKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             CCSEEEECSC---------CHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCceeeecCC---------ChHHHHHHHHHHhcCCceEEE
Confidence            5787764311         135788899999999999986

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=91.93  E-value=0.013  Score=53.91  Aligned_cols=73  Identities=15%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             CCCCHHHHHHHHHc----CCC-ceeeeccc----CCCCCCCCCccEEEeCC-ccccccc-------CCCchhhhhccccc
Q 017983            6 KDEHEAQIQFALER----GIP-AILSVIGT----QKLTFPDDAYDLIHCAR-CRVHWDA-------QGGKPLLELNRILR   68 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p-~~~~~~~~----~~LPfpd~sFD~v~cs~-~~~~~~~-------~~~~~l~E~~RVLr   68 (363)
                      -|.|+..++.|++.    |+. ..+...++    +.++...+.||+|++.- |...=..       +...++..+.++||
T Consensus       173 vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLk  252 (318)
T d1wxxa2         173 VDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLK  252 (318)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE
T ss_pred             ecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcC
Confidence            47888888888755    664 45555553    33667788999999842 1100000       01136778899999


Q ss_pred             CCeEEEEEeC
Q 017983           69 PGGFFIWSAT   78 (363)
Q Consensus        69 PGG~~~~s~~   78 (363)
                      |||.+++++-
T Consensus       253 pGG~Lv~~sc  262 (318)
T d1wxxa2         253 EGGILATASC  262 (318)
T ss_dssp             EEEEEEEEEC
T ss_pred             CCCEEEEEeC
Confidence            9999999865

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.87  E-value=0.056  Score=47.19  Aligned_cols=65  Identities=17%  Similarity=0.165  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHHc---------CC-CceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            7 DEHEAQIQFALER---------GI-PAILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         7 D~~~~qvq~A~er---------g~-p~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      |.++..+.+|.++         ++ .+.+...+......+.+.||.|++..+..+.       -..+.+.|||||++++.
T Consensus       117 E~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~-------p~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         117 EHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDT-------PTELINQLASGGRLIVP  189 (223)
T ss_dssp             ESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSC-------CHHHHHTEEEEEEEEEE
T ss_pred             ecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccceeeEEEEeechhc-------hHHHHHhcCCCcEEEEE
Confidence            5677777777654         22 3455556677777778899999997665332       23567899999999886


Q ss_pred             eC
Q 017983           77 AT   78 (363)
Q Consensus        77 ~~   78 (363)
                      ..
T Consensus       190 vg  191 (223)
T d1r18a_         190 VG  191 (223)
T ss_dssp             ES
T ss_pred             Ee
Confidence            43

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.85  E-value=0.067  Score=49.04  Aligned_cols=74  Identities=16%  Similarity=0.197  Sum_probs=47.8

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeeccc----CCCCCCCCCccEEEeCC-ccccccc-------CCCchhhhhcccc
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGT----QKLTFPDDAYDLIHCAR-CRVHWDA-------QGGKPLLELNRIL   67 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~----~~LPfpd~sFD~v~cs~-~~~~~~~-------~~~~~l~E~~RVL   67 (363)
                      -|.++..++.|++.    |+.  +.+...++    ..++.....||+|++.- +...-..       +-..++..+.++|
T Consensus       174 vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll  253 (324)
T d2as0a2         174 IDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLV  253 (324)
T ss_dssp             EESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTE
T ss_pred             ecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            37888888888664    664  34445553    33566789999999842 1110000       0013678888999


Q ss_pred             cCCeEEEEEeCC
Q 017983           68 RPGGFFIWSATP   79 (363)
Q Consensus        68 rPGG~~~~s~~~   79 (363)
                      ||||.|++++-.
T Consensus       254 ~pGG~lv~~s~s  265 (324)
T d2as0a2         254 KDGGILVTCSCS  265 (324)
T ss_dssp             EEEEEEEEEECC
T ss_pred             CCCcEEEEEeCC
Confidence            999999998653

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.39  E-value=0.02  Score=50.78  Aligned_cols=43  Identities=19%  Similarity=0.233  Sum_probs=35.9

Q ss_pred             CCCCCCccEEEeCCcccccccCC-CchhhhhcccccCCeEEEEEeC
Q 017983           34 TFPDDAYDLIHCARCRVHWDAQG-GKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus        34 Pfpd~sFD~v~cs~~~~~~~~~~-~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.|  ..|+++++.++|+|+++. ..+|+.+++.|+|||.+++...
T Consensus       136 ~~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         136 SVP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             CCC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            455  349999999999998653 4689999999999999999853

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=90.42  E-value=0.072  Score=51.93  Aligned_cols=44  Identities=14%  Similarity=0.103  Sum_probs=27.7

Q ss_pred             CCcceeeecccccc----------ccccCCH-HHHHHHHhHhccCCeEEEEEcCH
Q 017983          281 RTYDLLHSSFLLSD----------VTQRCDI-ADVAVEMDRILRPGGYVLVQDTL  324 (363)
Q Consensus       281 ~sFDlVh~~~~l~~----------~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~  324 (363)
                      ..||+|+++==|..          .....+. .-++.-+.+.|+|||++++--..
T Consensus       255 ~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~  309 (524)
T d2ar0a1         255 PKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  309 (524)
T ss_dssp             CCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence            67999998732211          0001112 23788899999999998776443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.42  E-value=0.25  Score=40.61  Aligned_cols=90  Identities=20%  Similarity=0.148  Sum_probs=55.4

Q ss_pred             CceEEEecccc-cHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccc---------cCCCCCCCcceeee
Q 017983          221 VRNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCE---------SFNTYPRTYDLLHS  288 (363)
Q Consensus       221 ~r~VLDvGCG~-G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e---------~~lpfp~sFDlVh~  288 (363)
                      ..+||-+|||. |.++..+++ .+..  .|+.++.+ +.++.+.+-|...++....+         ..++.++-||+|+-
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid  106 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE  106 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             CCEEEEECCCccchhheecccccccc--cccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEee
Confidence            36999999984 556666665 4542  34555655 67888888775322211000         01222356898774


Q ss_pred             ccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          289 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       289 ~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      .-.     .    ...+.+..+.|||||++++.
T Consensus       107 ~vG-----~----~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         107 ATG-----D----SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             CSS-----C----TTHHHHHHHHEEEEEEEEEC
T ss_pred             cCC-----c----hhHHHHHHHHhcCCCEEEEE
Confidence            311     1    22788889999999999875

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.77  E-value=0.14  Score=48.09  Aligned_cols=93  Identities=15%  Similarity=0.081  Sum_probs=57.9

Q ss_pred             CceEEEecccccHHHHHhh-cCCCeEEEEeecCCc-chHHHHHhcC----c-----------------eeeeccccccCC
Q 017983          221 VRNVMDMNASYGGFAAALI-DQPLWVMNVVPIDAP-DTLSIIFDRG----L-----------------IGMYHDWCESFN  277 (363)
Q Consensus       221 ~r~VLDvGCG~G~faa~L~-~~~v~v~~v~~~d~s-~~L~~a~~Rg----l-----------------~~~~~d~~e~~l  277 (363)
                      ..+|||..||+|.++...+ +.++.  .|+..|.+ +.++.+.+.-    .                 +...+..+...+
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~--~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAE--EVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCS--EEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCC--EEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            3589999999999998544 44542  46677877 5666554321    1                 111111111111


Q ss_pred             CC-CCCcceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEEc
Q 017983          278 TY-PRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD  322 (363)
Q Consensus       278 pf-p~sFDlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~D  322 (363)
                      .- ...||+|...-    +   .....+|.-.-|-+|.||.+.++-
T Consensus       124 ~~~~~~fDvIDiDP----f---Gs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         124 AERHRYFHFIDLDP----F---GSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HHSTTCEEEEEECC----S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhcCcCCcccCCC----C---CCcHHHHHHHHHHhccCCEEEEEe
Confidence            11 15699988762    2   223558999999999999999984

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.43  E-value=0.16  Score=43.99  Aligned_cols=65  Identities=22%  Similarity=0.266  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHc----CCCc-eeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEEeC
Q 017983            7 DEHEAQIQFALER----GIPA-ILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWSAT   78 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p~-~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s~~   78 (363)
                      |.++..+++|+++    |+.. .+...+......+.+.||.|++..+..+.+    ..   +..-|||||++++..-
T Consensus       108 e~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip----~~---l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         108 ERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIP----EP---LIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSCC----HH---HHHTEEEEEEEEEEEC
T ss_pred             eccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccccCC----HH---HHHhcCCCCEEEEEEc
Confidence            5567777777765    6664 444455555556689999999976554422    22   3456999999998643

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=88.80  E-value=0.28  Score=43.53  Aligned_cols=99  Identities=14%  Similarity=0.067  Sum_probs=59.7

Q ss_pred             hccccchhHHHHHH----HhhhhccccCCCCCceEEEecccccHHHHHhhcCCCeEEEEeecCCc----chHHHHHhcCc
Q 017983          194 AFNKDTTHWYALVS----DVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP----DTLSIIFDRGL  265 (363)
Q Consensus       194 ~F~~~~~~W~~~~~----~~y~~~l~i~~~~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s----~~L~~a~~Rgl  265 (363)
                      +|......|+..-.    +....-++++.+...+|||+-||.|.-+..|+..+..|   +.+..+    .+++-+.+|..
T Consensus        58 dF~~g~~~~R~~~~~~~~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V---~~iEr~p~l~~ll~d~l~r~~  134 (250)
T d2oyra1          58 DFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRV---RMLERNPVVAALLDDGLARGY  134 (250)
T ss_dssp             CSSSHHHHHHHHHSCGGGSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCE---EEEECCHHHHHHHHHHHHHHH
T ss_pred             ECCCcHHHHhhhccCcchhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEE---EEEccCHHHHHHHHHHHHHHH
Confidence            47777778877532    11233355565555689999999999888888766543   333333    23443333321


Q ss_pred             ------------eeeeccccccCCCCC-CCcceeeeccccccc
Q 017983          266 ------------IGMYHDWCESFNTYP-RTYDLLHSSFLLSDV  295 (363)
Q Consensus       266 ------------~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~  295 (363)
                                  +.+++..+...+.-. ..||+|...=+|.+-
T Consensus       135 ~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         135 ADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             HCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEEECCCCCCC
T ss_pred             hCchhHHHHhhhheeecCcHHHHHhccCCCCCEEEECCCCccc
Confidence                        233443333345434 789999999888753

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.16  E-value=0.35  Score=39.25  Aligned_cols=94  Identities=15%  Similarity=-0.001  Sum_probs=56.9

Q ss_pred             ccCCCCCceEEEecccccHHHH-Hhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeecccccc--------CCCCCCCc
Q 017983          215 AINWSSVRNVMDMNASYGGFAA-ALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCES--------FNTYPRTY  283 (363)
Q Consensus       215 ~i~~~~~r~VLDvGCG~G~faa-~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~--------~lpfp~sF  283 (363)
                      +++++  .+||=+|||..++.+ .+++ .+..  +|+.+|.+ +-++.+.+-|....+..-.+.        ...++..|
T Consensus        23 ~~~~g--d~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          23 GVTLG--HKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             TCCTT--CEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred             CCCCC--CEEEEECCCccHHHHHHHHHHcCCc--eEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCc
Confidence            34444  589999998776543 4443 3442  35556666 678888887753222210000        01123568


Q ss_pred             ceeeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          284 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       284 DlVh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |+|+-...         -...+......|||||++++.
T Consensus        99 Dvvid~~G---------~~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          99 EVTIECTG---------AEASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             SEEEECSC---------CHHHHHHHHHHSCTTCEEEEC
T ss_pred             eEEEeccC---------CchhHHHHHHHhcCCCEEEEE
Confidence            88775421         134788899999999999986

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.30  E-value=0.27  Score=42.35  Aligned_cols=43  Identities=21%  Similarity=0.311  Sum_probs=28.8

Q ss_pred             CC-CCcceeeecc----cccccccc----CCHHHHHHHHhHhccCCeEEEEE
Q 017983          279 YP-RTYDLLHSSF----LLSDVTQR----CDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       279 fp-~sFDlVh~~~----~l~~~~~~----~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      +| +|+|+|+++=    .+..+...    ..+...+.|+.|||||||.+++.
T Consensus        19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_          19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            56 7888887751    11111111    12567889999999999999985

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=0.5  Score=42.38  Aligned_cols=64  Identities=11%  Similarity=0.173  Sum_probs=38.3

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc---C----ceeeeccccccCCCCC-CCcceeeec
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---G----LIGMYHDWCESFNTYP-RTYDLLHSS  289 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R---g----l~~~~~d~~e~~lpfp-~sFDlVh~~  289 (363)
                      ...+||++|+|+|.++..|++.+..+   +.+... ++++...++   .    .+.+++.   +.+-+. ..++.|+++
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll~~~~~v---~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~---D~l~~~~~~~~~vV~N   93 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLLEKAKKV---VACELDPRLVAELHKRVQGTPVASKLQVLVG---DVLKTDLPFFDTCVAN   93 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHSSEE---EEEESCHHHHHHHHHHHTTSTTGGGEEEEES---CTTTSCCCCCSEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHhcCCcE---EEEEEccchhHHHHHHHhhhccccchhhhHH---HHhhhhhhhhhhhhcc
Confidence            34699999999999999999876543   333333 344333322   1    1333432   235555 556677765

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.67  E-value=0.15  Score=43.86  Aligned_cols=65  Identities=20%  Similarity=0.363  Sum_probs=40.3

Q ss_pred             CCCHHHHHHHHH----cCCC--ceeeecccC----CC--CCCCCCccEEEeCCcccccccC--CCchhhhhcccccCCeE
Q 017983            7 DEHEAQIQFALE----RGIP--AILSVIGTQ----KL--TFPDDAYDLIHCARCRVHWDAQ--GGKPLLELNRILRPGGF   72 (363)
Q Consensus         7 D~~~~qvq~A~e----rg~p--~~~~~~~~~----~L--Pfpd~sFD~v~cs~~~~~~~~~--~~~~l~E~~RVLrPGG~   72 (363)
                      |.++..++.|++    .|+.  +.+...++.    .|  .+..+.||+|+.-    |+.+.  ....+.|..|+|||||.
T Consensus        88 d~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD----~~~~~~~~~~~l~~~~~lLkpGGv  163 (214)
T d2cl5a1          88 EMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLD----HWKDRYLPDTLLLEKCGLLRKGTV  163 (214)
T ss_dssp             ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEEC----SCGGGHHHHHHHHHHTTCEEEEEE
T ss_pred             eccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceeeec----ccccccccHHHHHHHhCccCCCcE
Confidence            556666676653    3764  444444432    22  3677899999975    23221  12357888999999997


Q ss_pred             EEE
Q 017983           73 FIW   75 (363)
Q Consensus        73 ~~~   75 (363)
                      +++
T Consensus       164 Iv~  166 (214)
T d2cl5a1         164 LLA  166 (214)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.22  E-value=0.58  Score=37.91  Aligned_cols=89  Identities=15%  Similarity=0.184  Sum_probs=54.3

Q ss_pred             CceEEEecc--cccHHHHHhhc-CCCeEEEEeecCCcchHHHHHhcCceeeec--c--cccc--CCCCCCCcceeeeccc
Q 017983          221 VRNVMDMNA--SYGGFAAALID-QPLWVMNVVPIDAPDTLSIIFDRGLIGMYH--D--WCES--FNTYPRTYDLLHSSFL  291 (363)
Q Consensus       221 ~r~VLDvGC--G~G~faa~L~~-~~v~v~~v~~~d~s~~L~~a~~Rgl~~~~~--d--~~e~--~lpfp~sFDlVh~~~~  291 (363)
                      ..+||-.|+  |.|.++..+++ .+..++.++.  ..+.++.+.+-|...++.  +  +-+.  .++-++.||+|+....
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~--~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g  106 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAG--TEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA  106 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH
T ss_pred             CCEEEEEeccccccccccccccccCcccccccc--cccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc
Confidence            459999997  45666666665 4555433332  225678888888643331  1  0000  0111267998886421


Q ss_pred             cccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          292 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       292 l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                                ...+.+..++|||||.++..
T Consensus       107 ----------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         107 ----------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             ----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             ----------HHHHHHHHhccCCCCEEEEE
Confidence                      23678888999999999974

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=84.93  E-value=0.33  Score=42.92  Aligned_cols=41  Identities=5%  Similarity=0.087  Sum_probs=30.6

Q ss_pred             CCceEEEecccccHHHHHhhcCCCeEEEEeecCCc-chHHHHHhc
Q 017983          220 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR  263 (363)
Q Consensus       220 ~~r~VLDvGCG~G~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~R  263 (363)
                      ..+.||.+|||+|.++..|++.+..   |.+++.. .+++...++
T Consensus        21 ~~d~vlEIGpG~G~LT~~Ll~~~~~---v~aiEiD~~l~~~L~~~   62 (252)
T d1qyra_          21 KGQAMVEIGPGLAALTEPVGERLDQ---LTVIELDRDLAARLQTH   62 (252)
T ss_dssp             TTCCEEEECCTTTTTHHHHHTTCSC---EEEECCCHHHHHHHHTC
T ss_pred             CCCEEEEECCCchHHHHHHHccCCc---eEEEEeccchhHHHHHH
Confidence            3569999999999999999987654   4555655 566655554

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=84.46  E-value=0.96  Score=36.97  Aligned_cols=94  Identities=11%  Similarity=0.022  Sum_probs=55.9

Q ss_pred             ccCCCCCceEEEecccc-cHHHHHhhcC-CCeEEEEeecCCc-chHHHHHhcCceeeecccccc------CCCCCCCcce
Q 017983          215 AINWSSVRNVMDMNASY-GGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCES------FNTYPRTYDL  285 (363)
Q Consensus       215 ~i~~~~~r~VLDvGCG~-G~faa~L~~~-~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~------~lpfp~sFDl  285 (363)
                      +++++  .+||=+|||. |.+++.+++. +..  .|+.+|.+ +-++.+.+-|...++..--+.      .++-..-||+
T Consensus        24 ~~~~g--~~VlI~GaG~vGl~~~q~ak~~Ga~--~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~   99 (174)
T d1jqba2          24 DIEMG--SSVVVIGIGAVGLMGIAGAKLRGAG--RIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDR   99 (174)
T ss_dssp             TCCTT--CCEEEECCSHHHHHHHHHHHTTTCS--CEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEE
T ss_pred             CCCCC--CEEEEEcCCcchhhhhhhhhccccc--ccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcce
Confidence            34544  4888899986 6667666663 332  24455665 668888887753322110000      1111245888


Q ss_pred             eeeccccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          286 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       286 Vh~~~~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      |+-.-.     .    ...+.+..+.|||||.+++.
T Consensus       100 vid~~g-----~----~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2         100 VIMAGG-----G----SETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             EEECSS-----C----TTHHHHHHHHEEEEEEEEEC
T ss_pred             EEEccC-----C----HHHHHHHHHHHhcCCEEEEE
Confidence            764321     1    12678888999999999985

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=83.64  E-value=0.8  Score=36.88  Aligned_cols=93  Identities=9%  Similarity=0.062  Sum_probs=54.3

Q ss_pred             ccCCCCCceEEEecccc-cHHHHHhhc-CCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeecc
Q 017983          215 AINWSSVRNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSF  290 (363)
Q Consensus       215 ~i~~~~~r~VLDvGCG~-G~faa~L~~-~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~  290 (363)
                      +++++  .+||=+|||. |.++..+++ .+..++   ..+.+ +-++.+.+-|...++....+...... +.||.++-.-
T Consensus        27 ~~~~G--~~VlI~GaG~vG~~a~qlak~~Ga~~i---~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~  101 (168)
T d1uufa2          27 QAGPG--KKVGVVGIGGLGHMGIKLAHAMGAHVV---AFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV  101 (168)
T ss_dssp             TCCTT--CEEEEECCSHHHHHHHHHHHHTTCEEE---EEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECC
T ss_pred             CCCCC--CEEEEeccchHHHHHHHHhhcccccch---hhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeee
Confidence            34544  5888899874 456666665 455543   33333 56777877776333321111111122 6799877542


Q ss_pred             ccccccccCCHHHHHHHHhHhccCCeEEEEE
Q 017983          291 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQ  321 (363)
Q Consensus       291 ~l~~~~~~~~~~~~L~Em~RVLRPGG~lii~  321 (363)
                      .-.         ..+....++|+|||.+++.
T Consensus       102 g~~---------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2         102 AAP---------HNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             SSC---------CCHHHHHTTEEEEEEEEEC
T ss_pred             ecc---------hhHHHHHHHHhcCCEEEEe
Confidence            211         1466777899999999986

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.49  E-value=0.81  Score=40.26  Aligned_cols=65  Identities=11%  Similarity=0.126  Sum_probs=46.6

Q ss_pred             CCCCHHHHHHHHHc----CCC--ceeeecccCCCCCCCCCccEEEeCCcccccccCCCchhhhhcccccCCeEEEEE
Q 017983            6 KDEHEAQIQFALER----GIP--AILSVIGTQKLTFPDDAYDLIHCARCRVHWDAQGGKPLLELNRILRPGGFFIWS   76 (363)
Q Consensus         6 ~D~~~~qvq~A~er----g~p--~~~~~~~~~~LPfpd~sFD~v~cs~~~~~~~~~~~~~l~E~~RVLrPGG~~~~s   76 (363)
                      -|.++..++.|.+.    |+.  +.+...|+..++- .+.||.|+...  .+   ....++.++.++|+|||.+.+.
T Consensus       136 vd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~--p~---~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         136 IEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY--VV---RTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             ECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC--CS---SGGGGHHHHHHHEEEEEEEEEE
T ss_pred             ecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECC--CC---chHHHHHHHHhhcCCCCEEEEE
Confidence            37788888888654    665  4556677776654 58899998642  11   2346899999999999998664

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.59  E-value=2.6  Score=37.22  Aligned_cols=63  Identities=14%  Similarity=0.138  Sum_probs=39.4

Q ss_pred             cCCCceeeecccCCC--CCCCCCccEEEe----CCcccccccCCC------------------chhhhhcccccCCeEEE
Q 017983           19 RGIPAILSVIGTQKL--TFPDDAYDLIHC----ARCRVHWDAQGG------------------KPLLELNRILRPGGFFI   74 (363)
Q Consensus        19 rg~p~~~~~~~~~~L--Pfpd~sFD~v~c----s~~~~~~~~~~~------------------~~l~E~~RVLrPGG~~~   74 (363)
                      .|+.+...+......  +...+.||.|.+    |-.. .+..++.                  ..|..+.+.|||||+++
T Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G-~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lv  227 (284)
T d1sqga2         149 LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATG-VIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLV  227 (284)
T ss_dssp             TTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGG-GTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             ccccceeeeccccccchhcccccccEEEEeccccccC-ccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEE
Confidence            388766655543332  245578999985    3211 1111111                  36778889999999999


Q ss_pred             EEeCCCCC
Q 017983           75 WSATPVYR   82 (363)
Q Consensus        75 ~s~~~~~~   82 (363)
                      +|+=.+..
T Consensus       228 YsTCS~~~  235 (284)
T d1sqga2         228 YATCSVLP  235 (284)
T ss_dssp             EEESCCCG
T ss_pred             EeeecCch
Confidence            99776553

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.46  E-value=2.1  Score=33.95  Aligned_cols=102  Identities=20%  Similarity=0.226  Sum_probs=64.2

Q ss_pred             eEEEecccc-c-HHHHHhhcCCCeEEEEeecCCc-chHHHHHhcCceeeeccccccCCCCC-CCcceeeecccccccccc
Q 017983          223 NVMDMNASY-G-GFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR  298 (363)
Q Consensus       223 ~VLDvGCG~-G-~faa~L~~~~v~v~~v~~~d~s-~~L~~a~~Rgl~~~~~d~~e~~lpfp-~sFDlVh~~~~l~~~~~~  298 (363)
                      +|+=+|||. | ++|..|.+.+. ...|.+.|.+ +.++.+.+.|.+......   ..... ...|+|+..-=      .
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~dlIila~p------~   72 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDLGIIDEGTTS---IAKVEDFSPDFVMLSSP------V   72 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHTTSCSEEESC---GGGGGGTCCSEEEECSC------H
T ss_pred             EEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECChHHHHHHHHhhcchhhhhh---hhhhhccccccccccCC------c
Confidence            577789985 4 47778877653 1246777877 789999999875433221   11123 56788876521      1


Q ss_pred             CCHHHHHHHHhHhccCCeEEEEEcC--HHHHHHHHHHH
Q 017983          299 CDIADVAVEMDRILRPGGYVLVQDT--LEMINKLKPVL  334 (363)
Q Consensus       299 ~~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~l~  334 (363)
                      .....++.|+...++++-.++-.-.  ....+.+++..
T Consensus        73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~  110 (171)
T d2g5ca2          73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL  110 (171)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred             hhhhhhhhhhhccccccccccccccccHHHHHHHHHhh
Confidence            2357799999999998865543332  34555565544

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.56  E-value=1.6  Score=39.24  Aligned_cols=80  Identities=15%  Similarity=0.226  Sum_probs=49.5

Q ss_pred             CCCCHHHHHHHHH---c-CCCcee-eecccCCCCCCCCCccEEEe----CCcccccccCCC------------------c
Q 017983            6 KDEHEAQIQFALE---R-GIPAIL-SVIGTQKLTFPDDAYDLIHC----ARCRVHWDAQGG------------------K   58 (363)
Q Consensus         6 ~D~~~~qvq~A~e---r-g~p~~~-~~~~~~~LPfpd~sFD~v~c----s~~~~~~~~~~~------------------~   58 (363)
                      .|.++.-++...+   | |+...+ ...++..++..+..||.|.+    |... .+..++.                  .
T Consensus       147 ~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPCSg~G-~~~r~p~~~~~~~~~~~~~l~~~Q~~  225 (313)
T d1ixka_         147 FDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSG-TIHKNPERKWNRTMDDIKFCQGLQMR  225 (313)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTT-TCC--------CCHHHHHHHHHHHHH
T ss_pred             eccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEccccccCC-ceeeccchhhhhhhhHHHHHHHHHHH
Confidence            4666666655443   3 776444 44456677778899999986    3211 0111110                  3


Q ss_pred             hhhhhcccccCCeEEEEEeCCCCCCChh
Q 017983           59 PLLELNRILRPGGFFIWSATPVYRHDDR   86 (363)
Q Consensus        59 ~l~E~~RVLrPGG~~~~s~~~~~~~~~e   86 (363)
                      .|..+.+.|||||++++|+=.++....|
T Consensus       226 iL~~a~~~lk~gG~lVYsTCSl~~eENE  253 (313)
T d1ixka_         226 LLEKGLEVLKPGGILVYSTCSLEPEENE  253 (313)
T ss_dssp             HHHHHHHHEEEEEEEEEEESCCCGGGTH
T ss_pred             HHHhhhheeCCCcEEEEeeccCChHhHH
Confidence            6677889999999999997766543333

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=81.11  E-value=0.42  Score=43.49  Aligned_cols=72  Identities=19%  Similarity=0.163  Sum_probs=42.7

Q ss_pred             CCCHHHHHHHHHc----CCC---ceeeeccc----CCCCCCCCCccEEEeCC---cc-----cccccCCCchhhhhcccc
Q 017983            7 DEHEAQIQFALER----GIP---AILSVIGT----QKLTFPDDAYDLIHCAR---CR-----VHWDAQGGKPLLELNRIL   67 (363)
Q Consensus         7 D~~~~qvq~A~er----g~p---~~~~~~~~----~~LPfpd~sFD~v~cs~---~~-----~~~~~~~~~~l~E~~RVL   67 (363)
                      |.++..++.|.+.    |+.   ..+...++    +.+.-..+.||+|++--   ..     ..-..+-...+..+.++|
T Consensus       174 D~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll  253 (317)
T d2b78a2         174 DLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEIL  253 (317)
T ss_dssp             ESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTE
T ss_pred             cCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHc
Confidence            6666666666644    553   34555554    22333567899999831   10     000000113677788999


Q ss_pred             cCCeEEEEEeC
Q 017983           68 RPGGFFIWSAT   78 (363)
Q Consensus        68 rPGG~~~~s~~   78 (363)
                      +|||.|++++-
T Consensus       254 ~pgG~l~~~sc  264 (317)
T d2b78a2         254 SENGLIIASTN  264 (317)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCCCEEEEEeC
Confidence            99999999865