Citrus Sinensis ID: 017992

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MRSSLVLCFVVLVAFGFVVHGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTSAPHY
cccccEEEcEEEccccccccccccccEEEEEEEEcccEEEEEEEcccEEEEEEEEccccccccEEEccccHHcccccccccccccccccccccccEEEEccEEEEEEccccccccccccccccEEcEEEEEEEccccccEEEEEEEcccccccccccEEEEEEEEEccccEEEEEEEEEEccccccccccccccccccccccccccccEEEEEcccEEEccccccccccccccccccccccccccccHHHccccccccccEEEcccccccEEEEEEEEccccccEEEEEEcccEEEEEccccccccccccccEEcccEEEEEcccccccccccccccccEEccccEEEEEEEEEEEEEcccc
ccEEEEEEEEEEHHccccccccccccEEEEEEEEcccEEEEEEEccEEEEEEEEcccccccccEEcccccHHHHHHcccccccEEccEccEEHHHEEEEccEEEEccccEccEEEccccccHHHcEcEEEEEcccccccEEEEEEEcccccccccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEcccEEEEcccccccccccEEEEEEccccccccccccccccEcccccccccccccccHHHHHHHccccccccEEEccccccccEEEEEEEccccccEEEEEEccccEEEEEccccccccccccEEEccccEEEEccccccccccccccccEEEccccEEEEEEEEEEEEccccc
MRSSLVLCFVVLVAFGFVVHgsvasnavgvydlkkgnfsvkltNWGATLISVvlpdkhgklIDVALgydsvndykndssyigATVGRVanriggaqftLDGIHYKLVAnegknmlhggkigFSDVVWKVEKyqneghaphVIFAYhsydgeqgfpgdlsVTVGYTLVGDKQLRVTMKAKAlnkatpvnlaqhtywnlgghnsgdiLSEEIQIFASyftpvdsqliptghivsvkgtpydflkphtvggridklphgydinyvleagsgnkmKKVAVVHDKKSGIVMKlttnqpgvqfytanslkdvkgkggfvyqphaalcletqafpdsvnhpnfpstivnpgetykhhmvfkfstsaphy
MRSSLVLCFVVLVAFGFVVHGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVleagsgnkmKKVAVVHDKKSGIVMKlttnqpgvqfYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTSAPHY
MRSSLVLCFVVLVAFGFVVHGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTSAPHY
****LVLCFVVLVAFGFVVHGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFK********
***SLVLCFVVLVAFGFVVHGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTSA***
MRSSLVLCFVVLVAFGFVVHGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTSAPHY
MRSSLVLCFVVLVAFGFVVHGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTSA***
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRSSLVLCFVVLVAFGFVVHGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTSAPHY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
Q5EA79342 Aldose 1-epimerase OS=Bos yes no 0.900 0.953 0.439 5e-70
Q66HG4342 Aldose 1-epimerase OS=Rat yes no 0.933 0.988 0.424 1e-68
Q9GKX6342 Aldose 1-epimerase OS=Sus yes no 0.933 0.988 0.415 2e-67
Q8K157342 Aldose 1-epimerase OS=Mus yes no 0.933 0.988 0.421 3e-67
Q96C23342 Aldose 1-epimerase OS=Hom yes no 0.878 0.929 0.425 3e-65
Q5R8U1342 Aldose 1-epimerase OS=Pon yes no 0.878 0.929 0.419 7e-65
P05149381 Aldose 1-epimerase OS=Aci yes no 0.903 0.858 0.383 6e-57
P0A9C4346 Aldose 1-epimerase OS=Shi yes no 0.853 0.893 0.349 3e-50
P0A9C3346 Aldose 1-epimerase OS=Esc N/A no 0.853 0.893 0.349 3e-50
P21955348 Aldose 1-epimerase OS=Str yes no 0.853 0.887 0.323 5e-44
>sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1 Back     alignment and function desciption
 Score =  265 bits (677), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/339 (43%), Positives = 200/339 (58%), Gaps = 13/339 (3%)

Query: 23  VASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIG 82
           + +  V  + L+     V + +WG T+ ++ + D+ G+  DV LG+D +  Y     Y G
Sbjct: 14  LGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFDELEGYLQKQPYFG 73

Query: 83  ATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVI 142
           A VGRVANRI    FTLDG  YKL  N G N LHGG  GF  V+W      N      V 
Sbjct: 74  AVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVKGFDKVLWTPRVLSN-----GVE 128

Query: 143 FAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNS 202
           F+  S DGE+G+PG+L V V YTL G  +L V  +A+A ++ TPVNL  H+Y+NL G  S
Sbjct: 129 FSRVSPDGEEGYPGELKVWVMYTLDGG-ELVVNYRAQA-SQTTPVNLTNHSYFNLAGQGS 186

Query: 203 GDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKL-PHGYDINY 261
            +I   E+ I A  F PVD  LIPTG I SV+GT +D  KP  +G  + +   +G+D N+
Sbjct: 187 PNIYDHEVTIEADAFLPVDEVLIPTGEIASVQGTAFDLRKPVELGKHLQEFHVNGFDHNF 246

Query: 262 VLEAGSGNKMKK-VAVVHDKKSGIVMKLTTNQPGVQFYTANSLK-DVKGKGGFVYQPHAA 319
            L+   G+K K+  A VH   SG V+++ T QPGVQFYT N L   +KGK G  Y  H+ 
Sbjct: 247 CLK---GSKEKRFCARVHHAGSGRVLEVYTTQPGVQFYTGNFLDGTLKGKSGAGYPKHSG 303

Query: 320 LCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTS 358
            CLETQ++PD+VN P+FP  ++ PGE Y H   FKFS +
Sbjct: 304 FCLETQSWPDAVNQPHFPPVLLKPGEEYDHTTWFKFSVA 342
Mutarotase converts alpha-aldose to the beta-anomer. It is active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose.
Bos taurus (taxid: 9913)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 3
>sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1 Back     alignment and function description
>sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1 Back     alignment and function description
>sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1 Back     alignment and function description
>sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1 Back     alignment and function description
>sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1 Back     alignment and function description
>sp|P05149|GALM_ACICA Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1 Back     alignment and function description
>sp|P0A9C4|GALM_SHIFL Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1 Back     alignment and function description
>sp|P0A9C3|GALM_ECOLI Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1 Back     alignment and function description
>sp|P21955|GALM_STRTR Aldose 1-epimerase OS=Streptococcus thermophilus GN=galM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
224077612358 predicted protein [Populus trichocarpa] 0.977 0.988 0.709 1e-150
296082878 1699 unnamed protein product [Vitis vinifera] 0.969 0.206 0.697 1e-143
225452739359 PREDICTED: aldose 1-epimerase isoform 1 0.977 0.986 0.694 1e-142
449459464360 PREDICTED: aldose 1-epimerase-like [Cucu 0.969 0.975 0.671 1e-140
225452733359 PREDICTED: aldose 1-epimerase [Vitis vin 0.977 0.986 0.686 1e-139
255552888357 aldose-1-epimerase, putative [Ricinus co 0.983 0.997 0.682 1e-139
356531788371 PREDICTED: aldose 1-epimerase-like [Glyc 0.986 0.962 0.655 1e-138
224140955359 predicted protein [Populus trichocarpa] 0.980 0.988 0.638 1e-136
357501747362 Aldose 1-epimerase [Medicago truncatula] 0.975 0.975 0.658 1e-135
388506504372 unknown [Lotus japonicus] 0.983 0.956 0.657 1e-134
>gi|224077612|ref|XP_002305327.1| predicted protein [Populus trichocarpa] gi|222848291|gb|EEE85838.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/355 (70%), Positives = 300/355 (84%), Gaps = 1/355 (0%)

Query: 2   RSSLVLCFVVLVAFGFVVHGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKL 61
           +  ++LCF +L+ FGF   GS     +G+Y+LKKGNFSVKLTN+GA +IS++LPDK+GK+
Sbjct: 3   KFCVLLCFSLLLIFGFPAIGSATKEEIGMYELKKGNFSVKLTNYGAHIISLLLPDKYGKV 62

Query: 62  IDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIG 121
            D+ LGYD++ +YKNDSS  GATVGRVANRI GAQFTL+G  YKLVANEGKNMLHGG+ G
Sbjct: 63  ADIVLGYDTIKEYKNDSSNFGATVGRVANRIAGAQFTLNGTLYKLVANEGKNMLHGGRKG 122

Query: 122 FSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKAL 181
           FS VVWKV+KY  EG  P ++FAYHS+DGE+GFPGDL V VGY L+GD +LR+TMKAKAL
Sbjct: 123 FSTVVWKVKKYSPEGRTPCIVFAYHSFDGEEGFPGDLHVIVGYKLLGDNKLRITMKAKAL 182

Query: 182 NKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFL 241
           NKATPVNL  H YWNLGGHNSGDILSEEIQIFAS++TPVDSQLIPTG IV+VKGTPYDFL
Sbjct: 183 NKATPVNLVNHAYWNLGGHNSGDILSEEIQIFASHYTPVDSQLIPTGEIVTVKGTPYDFL 242

Query: 242 KPHTVGGRIDKLPHGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTAN 301
           KP+T+G +I+KL +GYDINY L+    +K+KKVA+V DKKSG +M++ TNQPGVQFYT+N
Sbjct: 243 KPNTIGSKINKLTNGYDINYALDGSGNDKLKKVAIVRDKKSGRMMEILTNQPGVQFYTSN 302

Query: 302 SLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFS 356
           +L   KGKGGFVY+P+AALCLETQ FPDSVNHPNFPS IVNPG  YKH M+ KFS
Sbjct: 303 TLYQ-KGKGGFVYEPYAALCLETQGFPDSVNHPNFPSQIVNPGTYYKHQMLIKFS 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082878|emb|CBI22179.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452739|ref|XP_002282868.1| PREDICTED: aldose 1-epimerase isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459464|ref|XP_004147466.1| PREDICTED: aldose 1-epimerase-like [Cucumis sativus] gi|449520918|ref|XP_004167479.1| PREDICTED: aldose 1-epimerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225452733|ref|XP_002282831.1| PREDICTED: aldose 1-epimerase [Vitis vinifera] gi|296082873|emb|CBI22174.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552888|ref|XP_002517487.1| aldose-1-epimerase, putative [Ricinus communis] gi|223543498|gb|EEF45029.1| aldose-1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356531788|ref|XP_003534458.1| PREDICTED: aldose 1-epimerase-like [Glycine max] Back     alignment and taxonomy information
>gi|224140955|ref|XP_002323842.1| predicted protein [Populus trichocarpa] gi|222866844|gb|EEF03975.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357501747|ref|XP_003621162.1| Aldose 1-epimerase [Medicago truncatula] gi|355496177|gb|AES77380.1| Aldose 1-epimerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388506504|gb|AFK41318.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
TAIR|locus:2150886490 AT5G15140 [Arabidopsis thalian 0.906 0.669 0.617 2.6e-109
TAIR|locus:2100352358 AT3G47800 [Arabidopsis thalian 0.900 0.910 0.583 7.5e-105
TAIR|locus:2088555341 AT3G17940 [Arabidopsis thalian 0.919 0.976 0.485 4.3e-86
TAIR|locus:2100257426 AT3G01260 [Arabidopsis thalian 0.859 0.730 0.459 1.8e-76
UNIPROTKB|Q5EA79342 GALM "Aldose 1-epimerase" [Bos 0.900 0.953 0.442 5.6e-68
UNIPROTKB|E2QWA2342 GALM "Uncharacterized protein" 0.930 0.985 0.428 5.1e-67
RGD|1359459342 Galm "galactose mutarotase (al 0.933 0.988 0.427 1.3e-66
UNIPROTKB|Q9GKX6342 GALM "Aldose 1-epimerase" [Sus 0.914 0.967 0.424 2e-65
MGI|MGI:2442420342 Galm "galactose mutarotase" [M 0.933 0.988 0.424 2.5e-65
UNIPROTKB|Q48IT0382 galM "Aldose 1-epimerase" [Pse 0.897 0.850 0.425 1.4e-64
TAIR|locus:2150886 AT5G15140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
 Identities = 203/329 (61%), Positives = 245/329 (74%)

Query:    28 VGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGR 87
             +G+Y+LKKGN +VK TNWGA++IS+  PDK+GK+ D+ LGYDSV  YK D  Y GATVGR
Sbjct:   160 IGLYELKKGNLTVKFTNWGASIISLHFPDKNGKMDDIVLGYDSVKTYKTDKVYFGATVGR 219

Query:    88 VANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHS 147
             VANRIG  +F L+G  YK   N+GKN LHGGK GF DVVW V K+Q +G  PH++F + S
Sbjct:   220 VANRIGKGKFKLNGKEYKTSVNDGKNTLHGGKKGFGDVVWAVAKHQYDGKKPHIVFTHTS 279

Query:   148 YDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILS 207
              DG+QGFPG+LSVTV Y LV D +L V M+AK  +KATPVNLA H+YWNLGGHNSGDILS
Sbjct:   280 PDGDQGFPGELSVTVTYKLVKDNELSVVMEAKPKDKATPVNLAHHSYWNLGGHNSGDILS 339

Query:   208 EEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGS 267
             EEIQI  S +TPVD +LIPTG I  VKGT YDFL+   +   +  L  GYDINY L+ G 
Sbjct:   340 EEIQILGSGYTPVDGELIPTGKINPVKGTAYDFLQLRPIKDNMKDLKTGYDINYCLD-GK 398

Query:   268 GNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAF 327
               KM+K+  + DKKSG  M+L+ NQ G+QFYT   LKDVKGK G VYQ    LCLETQ++
Sbjct:   399 AKKMRKIVELVDKKSGRKMELSGNQAGLQFYTGGMLKDVKGKNGAVYQAFGGLCLETQSY 458

Query:   328 PDSVNHPNFPSTIVNPGETYKHHMVFKFS 356
             PD++NHP FPS IV PG+ YKH M+FKFS
Sbjct:   459 PDALNHPKFPSQIVEPGKKYKHTMLFKFS 487
GO:0003824 "catalytic activity" evidence=IEA
GO:0004034 "aldose 1-epimerase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006012 "galactose metabolic process" evidence=ISS
GO:0016853 "isomerase activity" evidence=IEA
GO:0019318 "hexose metabolic process" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2100352 AT3G47800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088555 AT3G17940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100257 AT3G01260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5EA79 GALM "Aldose 1-epimerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWA2 GALM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1359459 Galm "galactose mutarotase (aldose 1-epimerase)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GKX6 GALM "Aldose 1-epimerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2442420 Galm "galactose mutarotase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q48IT0 galM "Aldose 1-epimerase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R8U1GALM_PONAB5, ., 1, ., 3, ., 30.41990.87840.9298yesno
P05149GALM_ACICA5, ., 1, ., 3, ., 30.38300.90330.8582yesno
P31765GALM_HAEIN5, ., 1, ., 3, ., 30.34350.84530.9yesno
Q5EA79GALM_BOVIN5, ., 1, ., 3, ., 30.43950.90050.9532yesno
P21955GALM_STRTR5, ., 1, ., 3, ., 30.32380.85350.8879yesno
Q9GKX6GALM_PIG5, ., 1, ., 3, ., 30.41590.93370.9883yesno
P0A9C4GALM_SHIFL5, ., 1, ., 3, ., 30.34980.85350.8930yesno
Q66HG4GALM_RAT5, ., 1, ., 3, ., 30.42450.93370.9883yesno
Q8K157GALM_MOUSE5, ., 1, ., 3, ., 30.42160.93370.9883yesno
Q96C23GALM_HUMAN5, ., 1, ., 3, ., 30.42590.87840.9298yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.1.3.30.914
3rd Layer5.1.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.IV.4373.1
aldose 1-epimerase (EC-5.1.3.3) (330 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_LG_I000617
hexokinase (508 aa)
     •  0.899
fgenesh4_pg.C_LG_VII001238
hexokinase (EC-2.7.1.2) (502 aa)
     •  0.899
fgenesh4_pg.C_LG_IX001086
hexokinase (508 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_XVIII0751
hexokinase (EC-2.7.1.1) (498 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_V1520
hexokinase/glucokinase (EC-2.7.1.4) (467 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_I1452
hexokinase (EC-2.7.1.1) (495 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
PLN00194337 PLN00194, PLN00194, aldose 1-epimerase; Provisiona 0.0
cd09019326 cd09019, galactose_mutarotase_like, galactose muta 1e-160
pfam01263301 pfam01263, Aldose_epim, Aldose 1-epimerase 1e-102
PRK11055342 PRK11055, galM, galactose-1-epimerase; Provisional 1e-101
TIGR02636336 TIGR02636, galM_Leloir, galactose mutarotase 1e-100
COG2017308 COG2017, GalM, Galactose mutarotase and related en 1e-63
PTZ00485376 PTZ00485, PTZ00485, aldolase 1-epimerase; Provisio 5e-39
cd01081284 cd01081, Aldose_epim, aldose 1-epimerase superfami 3e-31
cd09022284 cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, 1e-17
cd09021273 cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, 4e-06
PRK15172300 PRK15172, PRK15172, putative aldose-1-epimerase; P 3e-04
>gnl|CDD|215098 PLN00194, PLN00194, aldose 1-epimerase; Provisional Back     alignment and domain information 
 Score =  592 bits (1528), Expect = 0.0
 Identities = 218/337 (64%), Positives = 255/337 (75%), Gaps = 1/337 (0%)

Query: 21  GSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSY 80
            S A    G+Y+LK GN SVKLTN+GAT+ S++LPDK+GKL DV LG+DSV  YKNDS Y
Sbjct: 2   ASAAEEKPGIYELKNGNISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDSPY 61

Query: 81  IGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPH 140
            GA VGRVANRI GA+FTL+G+ YKL  N G N LHGG  GFS VVW+V KY+  G  P 
Sbjct: 62  FGAIVGRVANRIKGAKFTLNGVTYKLPPNNGPNSLHGGPKGFSKVVWEVAKYKK-GEKPS 120

Query: 141 VIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGH 200
           + F YHS+DGE+GFPGDLSVTV YTL+    LR+ M+AK LNKATPVNLAQHTYWNL GH
Sbjct: 121 ITFKYHSFDGEEGFPGDLSVTVTYTLLSSNTLRLDMEAKPLNKATPVNLAQHTYWNLAGH 180

Query: 201 NSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDIN 260
           NSGDILS +IQIF S+ TPVD  LIPTG I+ VKGTP+DF  P  +G RI++LP GYD N
Sbjct: 181 NSGDILSHKIQIFGSHITPVDENLIPTGEILPVKGTPFDFTTPKKIGSRINELPKGYDHN 240

Query: 261 YVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAAL 320
           YVL+      +KK A V D KSG V++L TN PG+QFYT+N +  VKGKGG VY  HA L
Sbjct: 241 YVLDGEEKEGLKKAAKVKDPKSGRVLELWTNAPGMQFYTSNYVNGVKGKGGAVYGKHAGL 300

Query: 321 CLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFST 357
           CLETQ FPD+VN PNFPS +VNPGE YKH M+F+FS 
Sbjct: 301 CLETQGFPDAVNQPNFPSVVVNPGEKYKHTMLFEFSA 337

Length = 337
>gnl|CDD|185696 cd09019, galactose_mutarotase_like, galactose mutarotase_like Back     alignment and domain information
>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase Back     alignment and domain information
>gnl|CDD|182931 PRK11055, galM, galactose-1-epimerase; Provisional Back     alignment and domain information
>gnl|CDD|233958 TIGR02636, galM_Leloir, galactose mutarotase Back     alignment and domain information
>gnl|CDD|224928 COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|240435 PTZ00485, PTZ00485, aldolase 1-epimerase; Provisional Back     alignment and domain information
>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily Back     alignment and domain information
>gnl|CDD|185699 cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>gnl|CDD|185698 cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>gnl|CDD|237918 PRK15172, PRK15172, putative aldose-1-epimerase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
PRK11055342 galM galactose-1-epimerase; Provisional 100.0
PLN00194337 aldose 1-epimerase; Provisional 100.0
PTZ00485376 aldolase 1-epimerase; Provisional 100.0
TIGR02636335 galM_Leloir galactose mutarotase. Members of this 100.0
KOG1604353 consensus Predicted mutarotase [Carbohydrate trans 100.0
cd09019326 galactose_mutarotase_like galactose mutarotase_lik 100.0
PRK15172300 putative aldose-1-epimerase; Provisional 100.0
COG2017308 GalM Galactose mutarotase and related enzymes [Car 100.0
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 100.0
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 100.0
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 100.0
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 100.0
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 100.0
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 100.0
cd09020269 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- 100.0
KOG1594305 consensus Uncharacterized enzymes related to aldos 99.92
COG0676287 Uncharacterized enzymes related to aldose 1-epimer 99.89
cd09023284 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t 99.85
cd09269293 deoxyribose_mutarotase deoxyribose mutarotase_like 99.23
PF14486302 DUF4432: Domain of unknown function (DUF4432); PDB 99.1
PF14315274 DUF4380: Domain of unknown function (DUF4380) 98.14
PRK01318 521 membrane protein insertase; Provisional 96.52
PF14849270 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_ 94.89
TIGR03593366 yidC_nterm membrane protein insertase, YidC/Oxa1 f 94.74
PF02929276 Bgal_small_N: Beta galactosidase small chain; Inte 85.41
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.5e-75  Score=556.21  Aligned_cols=328  Identities=38%  Similarity=0.687  Sum_probs=297.2

Q ss_pred             CCceEEEEEEEe-CCEEEEEeCcCceEEEEEeecCCCceeeEEecCCCcccccCCCCceeeeeecCCCcccCCEEEECCE
Q 017992           24 ASNAVGVYDLKK-GNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGI  102 (362)
Q Consensus        24 ~~~~~~~~~L~n-~~~~v~i~~~Ga~i~s~~~~~~~G~~~~vl~g~~~~~~y~~~~~~~G~~l~p~anRI~~g~~~~~G~  102 (362)
                      +|+.+..|+|+| ++++|+|+++||+|++|.++|++|+++|||+||++.++|..++.++|++|+||||||++|+|+++|+
T Consensus         5 ~g~~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~~~~~Ga~iGr~anRI~~g~f~~~G~   84 (342)
T PRK11055          5 DGQPYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQAAYLGASVGRYANRIANSRFTLDGE   84 (342)
T ss_pred             CCCeEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccCceeCCcCCcccCCEEEECCE
Confidence            678899999998 4799999999999999999998898899999999999998888899999999999999999999999


Q ss_pred             EEEeecCCCCCCcCCCCCCCCccceEEEEeecCCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEEeCC
Q 017992          103 HYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALN  182 (362)
Q Consensus       103 ~y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vty~L~~~~~L~i~~~~~n~~  182 (362)
                      +|+|++|+++|+|||+..||+++.|+++...    .++|+|++.++++++||||+++++|+|+|+++++|+|++++++ +
T Consensus        85 ~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~----~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a~~-d  159 (342)
T PRK11055         85 TYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN----DRQVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRATV-D  159 (342)
T ss_pred             EEEcccCCCCcccCCCCcccCCcEEEEEEcc----CCEEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEEEc-C
Confidence            9999999999999999999999999997754    4689999999988999999999999999986679999999998 9


Q ss_pred             cceeeeecccceeecCCC-CCCCccceEEEEeCCeEEeeCCCCCCCcceeccCCCCcCCCCCeecCcccccC-----CCc
Q 017992          183 KATPVNLAQHTYWNLGGH-NSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKL-----PHG  256 (362)
Q Consensus       183 ~~~p~~lg~HpYFnl~~~-~~~~i~~~~L~i~a~~~~~~d~~~lPtG~~~~~~~t~~df~~~~~l~~~~~~~-----~~~  256 (362)
                      ++||||+|+||||||++. ...++.+|.|+|+|++++++|+++||||++.++++++|||++++.|++.+.+.     ..+
T Consensus       160 ~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~i~a~~~~~~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~~~~~~~~~~g  239 (342)
T PRK11055        160 KPCPVNLTNHAYFNLDGAEEGSDVRNHKLQINADEYLPVDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFLADDDQQKVKG  239 (342)
T ss_pred             CCeEEeccccceEECCCCCCCCCccceEEEEecCCEEEECcccCccCcEeccCCCcccccCCcCcCcccccchhcccCCC
Confidence            999999999999999874 23579999999999999999999999999999999999999999998865211     147


Q ss_pred             ceeeEEeecCCCCcceeEEEEEeCCCCcEEEEEEcCCEEEEEcCCCCCccCCCCCccccCceEEEEccCCCCCCCCCCCC
Q 017992          257 YDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNF  336 (362)
Q Consensus       257 ~D~~f~l~~~~~~~~~~~a~l~~~~~g~~l~v~t~~p~~vvyt~~~~~~~~~~~~~~~~~~~~vciEP~~~pda~n~~~~  336 (362)
                      +||+|+++... +..+++|+|.++.++++|+|++++|++||||+++++...++.|..|.++.+||||||.+|||+|++.|
T Consensus       240 ~D~~fvl~~~~-~~~~~~a~l~~~~sg~~l~v~t~~p~lqvYT~n~~~~~~~~~g~~~~~~~gialE~q~~Pda~n~~~f  318 (342)
T PRK11055        240 YDHAFLLQAKG-DGKKPAAHLWSPDEKLQMKVYTTAPALQFYSGNFLAGTPSRGGGPYADYAGLALESQFLPDSPNHPEW  318 (342)
T ss_pred             cceEEEECCCC-cccceeEEEEcCCCCeEEEEEcCCCEEEEecCCccCCccCCCCcEeCCCceEEEEcccCCCcccccCC
Confidence            99999986421 12355799999999999999999999999999988654466788888999999999999999999999


Q ss_pred             C--CeEECCCCEEEEEEEEEEEe
Q 017992          337 P--STIVNPGETYKHHMVFKFST  357 (362)
Q Consensus       337 ~--~~~L~pGe~~~~~~~~~f~~  357 (362)
                      +  .++|+|||+|+++|+|+|++
T Consensus       319 ~~~~~~L~pg~~y~~~t~y~f~~  341 (342)
T PRK11055        319 PQPDCILKPGEEYRSLTEYQFIA  341 (342)
T ss_pred             CCCCeEECCCCEEEEEEEEEEEe
Confidence            6  89999999999999999976

>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like Back     alignment and domain information
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 Back     alignment and domain information
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like Back     alignment and domain information
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A Back     alignment and domain information
>PF14315 DUF4380: Domain of unknown function (DUF4380) Back     alignment and domain information
>PRK01318 membrane protein insertase; Provisional Back     alignment and domain information
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B Back     alignment and domain information
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain Back     alignment and domain information
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
1snz_A344 Crystal Structure Of Apo Human Galactose Mutarotase 2e-66
1lur_A339 Crystal Structure Of The GalmALDOSE EPIMERASE HOMOL 1e-38
1z45_A699 Crystal Structure Of The Gal10 Fusion Protein Galac 5e-29
1l7j_A347 X-Ray Structure Of Galactose Mutarotase From Lactoc 2e-25
1ns0_A347 Crystal Structure Of Galactose Mutarotase From Lact 4e-25
1ns8_A347 Crystal Structure Of Galactose Mutarotase From Lact 6e-25
1ns2_A347 Crystal Structure Of Galactose Mutarotase From Lact 8e-25
1nsu_A347 Crystal Structure Of Galactose Mutarotase From Lact 9e-25
1nsx_A347 Crystal Structure Of Galactose Mutarotase From Lact 9e-25
1nsm_A347 Crystal Structure Of Galactose Mutarotase From Lact 1e-24
1yga_A342 Crystal Structure Of Saccharomyces Cerevisiae Yn9a 2e-24
3imh_A338 Crystal Structure Of Galactose 1-Epimerase From Lac 5e-24
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase Length = 344 Back     alignment and structure 
Iteration: 1

 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/331 (42%), Positives = 191/331 (57%), Gaps = 13/331 (3%)
Query: 31  YDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVAN 90
           + L+     V + +WG T+ ++ + D+ G+  DV LG+  +  Y     Y GA +GRVAN
Sbjct: 24  FQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVAN 83
Query: 91  RIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDG 150
           RI    F +DG  Y L  N+  N LHGG  GF  V+W      N      V F+  S DG
Sbjct: 84  RIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSN-----GVQFSRISPDG 138
Query: 151 EQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEI 210
           E+G+PG+L V V YTL G  +L V  +A+A ++ATPVNL  H+Y+NL G  S +I   E+
Sbjct: 139 EEGYPGELKVWVTYTLDGG-ELIVNYRAQA-SQATPVNLTNHSYFNLAGQASPNINDHEV 196
Query: 211 QIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKL-PHGYDINYVLEAGSGN 269
            I A  + PVD  LIPTG +  V+GT +D  KP  +G  +     +G+D N+ L+   G+
Sbjct: 197 TIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLK---GS 253
Query: 270 KMKK-VAVVHDKKSGIVMKLTTNQPGVQFYTANSLK-DVKGKGGFVYQPHAALCLETQAF 327
           K K   A VH   SG V+++ T QPGVQFYT N L   +KGK G VY  H+  CLETQ +
Sbjct: 254 KEKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNW 313
Query: 328 PDSVNHPNFPSTIVNPGETYKHHMVFKFSTS 358
           PD+VN P FP  ++ PGE Y H   FKFS +
Sbjct: 314 PDAVNQPRFPPVLLRPGEEYDHTTWFKFSVA 344
>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE From C. Elegans, Northeast Structural Genomics Target Wr66 Length = 339 Back     alignment and structure
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 Back     alignment and structure
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus Lactis (Apo) Length = 347 Back     alignment and structure
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant E304q Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant D243n Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NS2|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant E304a Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant H96n Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant H170n Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant D243a Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a Protein, New York Structural Genomics Consortium Length = 342 Back     alignment and structure
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From Lactobacillus Acidophilus Ncfm Length = 338 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 1e-178
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 1e-176
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 1e-166
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 1e-157
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 1e-155
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 4e-71
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 4e-58
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 4e-50
3os7_A341 Galactose mutarotase-like protein; structural geno 7e-42
3q1n_A294 Galactose mutarotase related enzyme; structural ge 2e-13
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 7e-11
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 2e-06
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Length = 344 Back     alignment and structure
 Score =  498 bits (1284), Expect = e-178
 Identities = 142/346 (41%), Positives = 193/346 (55%), Gaps = 14/346 (4%)

Query: 15  FGFVVHGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDY 74
           FG +  G      V  + L+     V + +WG T+ ++ + D+ G+  DV LG+  +  Y
Sbjct: 11  FGELPSGG---GTVEKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGY 67

Query: 75  KNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQN 134
                Y GA +GRVANRI    F +DG  Y L  N+  N LHGG  GF  V+W      N
Sbjct: 68  LQKQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSN 127

Query: 135 EGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTY 194
                 V F+  S DGE+G+PG+L V V YTL G  +L V  +A+A ++ATPVNL  H+Y
Sbjct: 128 -----GVQFSRISPDGEEGYPGELKVWVTYTLDGG-ELIVNYRAQA-SQATPVNLTNHSY 180

Query: 195 WNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLP 254
           +NL G  S +I   E+ I A  + PVD  LIPTG +  V+GT +D  KP  +G  +    
Sbjct: 181 FNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFH 240

Query: 255 -HGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKD-VKGKGGF 312
            +G+D N+ L+     +    A VH   SG V+++ T QPGVQFYT N L   +KGK G 
Sbjct: 241 LNGFDHNFCLK--GSKEKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGA 298

Query: 313 VYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTS 358
           VY  H+  CLETQ +PD+VN P FP  ++ PGE Y H   FKFS +
Sbjct: 299 VYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSVA 344
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Length = 339 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Length = 347 Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Length = 338 Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Length = 342 Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341 Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 100.0
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 100.0
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 100.0
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 100.0
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 100.0
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 100.0
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 100.0
3os7_A341 Galactose mutarotase-like protein; structural geno 100.0
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 100.0
3q1n_A294 Galactose mutarotase related enzyme; structural ge 100.0
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 100.0
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 100.0
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 100.0
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 100.0
1jov_A270 HI1317; hypothetical protein, structure 2 function 99.97
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 99.88
3bs6_A280 Inner membrane protein OXAA; YIDC/OXA1/ALB3 family 93.33
3blc_A330 Inner membrane protein OXAA; YIDC, membrane assemb 89.54
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
Probab=100.00  E-value=7.2e-72  Score=533.03  Aligned_cols=312  Identities=27%  Similarity=0.475  Sum_probs=281.6

Q ss_pred             CCceEEEEEEEeC-CEEEEEeCcCceEEEEEeecCCCceeeEEecCCCcccccCCCCceeeeeecCCCcccCCEEEECCE
Q 017992           24 ASNAVGVYDLKKG-NFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGI  102 (362)
Q Consensus        24 ~~~~~~~~~L~n~-~~~v~i~~~Ga~i~s~~~~~~~G~~~~vl~g~~~~~~y~~~~~~~G~~l~p~anRI~~g~~~~~G~  102 (362)
                      .|+.+..|+|+|+ +++|+|.++||+|+||.++   |  +||||++++.++|..++.++|++||||||||++|+|+++|+
T Consensus        14 ~g~~v~~~tL~n~~g~~v~i~~~GA~l~sl~~~---~--~dvvlg~~~~~~y~~~~~~~G~~lgp~anRI~~g~f~~~G~   88 (338)
T 3imh_A           14 DNKDLCEITLENDAGMAVKVLNYGATLEKVLLD---G--ENMILSLNSPEDYSKERNFLGGTVGRIAGRVRAGQWKHGNE   88 (338)
T ss_dssp             TTEEEEEEEEECSSSEEEEEETBTTEEEEEEET---T--EECBCCCSSGGGGGTSCCCTTCEECSBCSEEGGGEEEETTE
T ss_pred             CCeEEEEEEEECCCcEEEEEecCCcEEEEEEEC---C--EEEEecCCChHHhccCCCeEeeEEEeeCCEecCCEEEECCE
Confidence            7889999999998 5999999999999999995   3  69999999999998888899999999999999999999999


Q ss_pred             EEEeecCCCCCCcCCCCCCCCccceEEEEeecCCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEEeCC
Q 017992          103 HYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALN  182 (362)
Q Consensus       103 ~y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vty~L~~~~~L~i~~~~~n~~  182 (362)
                      +|+|++|+++|+|||++ ||+++.|+++... +.++++|+|++.+++++++|||+++++|+|+|+++++|+|+|+++. +
T Consensus        89 ~y~L~~N~g~n~LHGg~-g~~~~~W~v~~~~-~~~~~~v~l~l~s~d~~~gyPg~~~~~vtY~L~~~~~L~i~~~a~~-d  165 (338)
T 3imh_A           89 IHQLPLNDGDNHIHGGI-GTDMHVWDFRPSC-DSEHARVDLTLFDPDGNNDYPGNLKLHARYELDNENNLHYLLEAVS-D  165 (338)
T ss_dssp             EEECCCCBTTBEETTSS-CGGGSBCEEEEEE-CSSEEEEEEEEEECTTGGGCCSCEEEEEEEEEETTSEEEEEEEEEE-S
T ss_pred             EEECCCCCCCcCCCCCC-CcCCceEEEEeee-ecCCCEEEEEEECCccccCCCeEEEEEEEEEEecCCeEEEEEEEec-C
Confidence            99999999999999999 9999999996532 1235789999999888899999999999999996679999999998 9


Q ss_pred             cceeeeecccceeecCCCCCCCccceEEEEeCCeEEeeCCCCCCCcceeccCCCCcCCCCCeecCcccccCC------Cc
Q 017992          183 KATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLP------HG  256 (362)
Q Consensus       183 ~~~p~~lg~HpYFnl~~~~~~~i~~~~L~i~a~~~~~~d~~~lPtG~~~~~~~t~~df~~~~~l~~~~~~~~------~~  256 (362)
                      ++||||+|+||||||++    ++.+|+|+|+|++++++|+++||||++++|++|+|||+.++.|++.+.+..      +|
T Consensus       166 ~~tp~nlg~HpYFnL~g----~i~~~~L~i~a~~~~~~d~~~iPTG~~~~v~gt~~DFr~~~~ig~~~~~~~~q~~~~~g  241 (338)
T 3imh_A          166 KLTIFNPVNHTYFNLGE----RAEDLNLQMNADYYLPVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKLRNG  241 (338)
T ss_dssp             SSEECBCEECCEECTTS----CGGGCEEEECEEEECCBCTTSSBSSCCEECTTSTTCCSSCEEHHHHHTSCCHHHHHHTS
T ss_pred             CCeEEEEeeCCEEeCCC----CcCCeEEEEEcCcEEEeCCccCCcCceecCCCCcccCCCCeEcchhhhccchhhcccCC
Confidence            99999999999999986    699999999999999999999999999999999999999999988764322      47


Q ss_pred             ceeeEEeecCCCCcceeEEEEEeCCCCcEEEEEEcCCEEEEEcCCCCCccCCCCCccccCceEEEEccCCCCCCCCCCCC
Q 017992          257 YDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNF  336 (362)
Q Consensus       257 ~D~~f~l~~~~~~~~~~~a~l~~~~~g~~l~v~t~~p~~vvyt~~~~~~~~~~~~~~~~~~~~vciEP~~~pda~n~~~~  336 (362)
                      |||||++++.     +++|+|.+  +|++|+|++++|++||||+++++.. + .|..|.++.+||||||++|  +|+++|
T Consensus       242 ~Dh~f~l~~~-----~~~a~l~~--sg~~l~v~t~~p~~q~YTgn~l~~~-g-~g~~~~~~~g~clE~q~~P--~n~~~f  310 (338)
T 3imh_A          242 LDHPFILNGN-----NPAALLSS--NKHRLIVKTNAPALVLYAGNHFNHT-G-IVNNIGQYDGITFEAQCPP--AEGNDL  310 (338)
T ss_dssp             CEEEEEECSC-----SCSEEEEC--SSEEEEEEESSSEEEEECCTTCCSB-T-TBTTCCTTSCEECEEESCC--CSSSCC
T ss_pred             CCCceeecCC-----ceEEEEEC--CCeEEEEEeCCCEEEEeCCCCcCCC-C-CCcccCccCEEEEEccCCC--CCCCCC
Confidence            9999998542     34678864  8999999999999999999988654 4 5677888899999999988  899999


Q ss_pred             CCeEECCCCEEEEEEEEEEEee
Q 017992          337 PSTIVNPGETYKHHMVFKFSTS  358 (362)
Q Consensus       337 ~~~~L~pGe~~~~~~~~~f~~~  358 (362)
                      +.++|+|||+|+++++|+|..-
T Consensus       311 ~~~vL~pGe~y~~~t~y~f~~~  332 (338)
T 3imh_A          311 GQITLLPFEKFKRTVDWKFEEG  332 (338)
T ss_dssp             GGGEECTTCCEEEEEEEEEEEC
T ss_pred             CCeEECCCCEEEEEEEEEECCc
Confidence            9999999999999999999754
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} Back     alignment and structure
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 362
d1nsza_340 b.30.5.4 (A:) Galactose mutarotase {Lactococcus la 4e-97
d1lura_329 b.30.5.4 (A:) Aldose 1-epimerase homologue {Nemato 5e-94
d1so0a_344 b.30.5.4 (A:) Galactose mutarotase {Human (Homo sa 1e-92
d1z45a1342 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's 9e-88
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Length = 340 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Aldose 1-epimerase (mutarotase)
domain: Galactose mutarotase
species: Lactococcus lactis [TaxId: 1358]

 Score =  290 bits (742), Expect = 4e-97
 Identities = 87/338 (25%), Positives = 139/338 (41%), Gaps = 19/338 (5%)

Query: 28  VGVYDLK-KGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVG 86
             +  L  K   ++  TN GA ++      K      + LG+DS  +Y    +Y GATVG
Sbjct: 11  SDLISLTNKAGVTISFTNLGARIVDWQKDGK-----HLILGFDSAKEYLEKDAYPGATVG 65

Query: 87  RVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYH 146
             A RI      + G  Y L  NEG   LHGG+      +W  E     G    V F+  
Sbjct: 66  PTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDL-GAEVQVKFSLV 124

Query: 147 SYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDIL 206
           S DG  G+PG + ++V ++   D + ++  +A + +K T  N   + Y+NL G  S  + 
Sbjct: 125 SNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGNVYFNLNGDASESVE 183

Query: 207 SEEIQIFASYFTPV-DSQLIPTGHIVSVKGTPYDFLKPHTVGGRID------KLPHGYDI 259
           +  +++ AS F P+ D   I  G IV +K T  DF +   +    +      +L  G D 
Sbjct: 184 NHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDH 243

Query: 260 NYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAA 319
            ++L+    +K               + + T+QP +  +TAN               H  
Sbjct: 244 PFLLDQLGLDK----EQARLTLDDTSISVFTDQPSIVIFTANFGDLGTLYHEKKQVHHGG 299

Query: 320 LCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFST 357
           +  E Q  P S   P      +  GE Y+   ++   T
Sbjct: 300 ITFECQVSPGSEQIPELGDISLKAGEKYQATTIYSLHT 337
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 329 Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Length = 344 Back     information, alignment and structure
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
d1lura_329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 100.0
d1nsza_340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 100.0
d1so0a_344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 100.0
d1z45a1342 Galactose mutarotase {Baker's yeast (Saccharomyces 100.0
d1jova_269 Hypothetical protein HI1317 {Haemophilus influenza 99.97
d1k1xa2275 4-alpha-glucanotransferase, C-terminal domain {Arc 86.59
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Aldose 1-epimerase (mutarotase)
domain: Aldose 1-epimerase homologue
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.8e-72  Score=534.48  Aligned_cols=321  Identities=31%  Similarity=0.553  Sum_probs=291.1

Q ss_pred             EEEEEeC-CEEEEEeCcCceEEEEEeecCCCceeeEEecCCCcccccCCCCceeeeeecCCCcccCCEEEECCEEEEeec
Q 017992           30 VYDLKKG-NFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVA  108 (362)
Q Consensus        30 ~~~L~n~-~~~v~i~~~Ga~i~s~~~~~~~G~~~~vl~g~~~~~~y~~~~~~~G~~l~p~anRI~~g~~~~~G~~y~l~~  108 (362)
                      .|+|+|+ +++|+|.++||+|++|.+++++|+.+|||+||++.++|..++.++|++|+||||||++|+|+++|++|+|++
T Consensus         4 ~i~l~N~~g~~v~i~~~GA~i~~l~~pd~~g~~~~vvlg~d~~~~Y~~~~~~~Ga~igr~aNRI~~g~f~~~G~~y~L~~   83 (329)
T d1lura_           4 FIEIANKQGLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEKDAASIGKTVGRVANRIKNSTLHFDGKQYTMTP   83 (329)
T ss_dssp             CEEEECSSSCEEEEETBTTEEEEEEEECTTSCEEECBCCCSSHHHHHHCSSCTTCEECSBCSEEGGGEEEETTEEEECCC
T ss_pred             EEEEECCCCcEEEEECCCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCccCcEecCcCCeeeCCeEEECCEEEEecc
Confidence            5899996 699999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCCCCCcCCCCCCCCccceEEEEeecCCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEEeCCcceeee
Q 017992          109 NEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVN  188 (362)
Q Consensus       109 n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vty~L~~~~~L~i~~~~~n~~~~~p~~  188 (362)
                      |+++|+|||+..||+.+.|+++...    .++++|++.+++++.||||+++++|+|+|++++.|+|+++++. ++++|+|
T Consensus        84 N~~~n~lHGg~~g~~~~~w~v~~~~----~~~v~~~~~~~~~~~GyPg~l~~~vtY~L~~~~~l~i~~~a~~-d~~tp~n  158 (329)
T d1lura_          84 NNGPHYLHGGPNGLGYRKWEVVRHA----PESVSFSVRANEQDDGLPGDAKIDVTYTVNDRNQLIIEHHATC-DTPGLLA  158 (329)
T ss_dssp             SBTTBEETTCTTSGGGSBCEEEEEE----TTEEEEEEEEEHHHHSSSSEEEEEEEEEECTTSEEEEEEEEEC-SSCEECB
T ss_pred             CCCCcccccCCCCcceEEEEEEeec----CceeEEEEEecCCccCcccceEEEEEEEEccCCEEEEEEEEee-ccccccc
Confidence            9999999999999999999998765    5799999999888889999999999999997788999999998 9999999


Q ss_pred             ecccceeecCCCCCCCccceEEEEeCCeEEeeCCCCCCCcceeccCCCCcCCCCCeecCcccccC--CCcceeeEEeecC
Q 017992          189 LAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKL--PHGYDINYVLEAG  266 (362)
Q Consensus       189 lg~HpYFnl~~~~~~~i~~~~L~i~a~~~~~~d~~~lPtG~~~~~~~t~~df~~~~~l~~~~~~~--~~~~D~~f~l~~~  266 (362)
                      +|+||||||++.  .++.+|.|+++|++++++|+++||||++.+++++++||+.++.|++.+.+.  ..++|++|++...
T Consensus       159 lt~H~YFnL~~~--~~i~~h~L~i~a~~~l~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~~~~~~~d~~~~~~~~  236 (329)
T d1lura_         159 LTNHAYWNLDGS--DTVAEHFLEMEADEFVEVDDTFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLDLDNDLVITKK  236 (329)
T ss_dssp             CEECCEECSSCC--SCSTTCEEEECEEEEEEECTTSCEEEEEEECTTSTTCCTTCEETTCSCCCSSCCCCCEEEEEECCC
T ss_pred             ccccceeecccc--ccccCeEEEeCcCeEEEeCccccccccccccccccccccccccccccccccccceecCCCEEEeec
Confidence            999999999863  579999999999999999999999999999999999999999999876543  2479999987643


Q ss_pred             C-CCcceeEEEEEeCCCCcEEEEEEcCCEEEEEcCCCCCccCCCCCccccCceEEEEccCCCCCCCCCCCCCCeEECCCC
Q 017992          267 S-GNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGE  345 (362)
Q Consensus       267 ~-~~~~~~~a~l~~~~~g~~l~v~t~~p~~vvyt~~~~~~~~~~~~~~~~~~~~vciEP~~~pda~n~~~~~~~~L~pGe  345 (362)
                      . .......++|.++.+|++|+|++++|++||||+++++. +++.|..+.++.+||||||++|||+|+++|+.++|+|||
T Consensus       237 ~~~~~~~~~~~l~~~~sg~~l~v~t~~p~~qvYT~~~l~~-~~~~g~~~~~~~gi~lEpq~~PdA~N~~~f~~~~L~pge  315 (329)
T d1lura_         237 TPPSTPSTYLRFWSEKSGIELSITTSYPVIHLYASKFLDC-KGKKGEHYKANKALAIEPQFHSAAPNFDHFPDVSLRPGD  315 (329)
T ss_dssp             CC----CCCEEEECTTTCEEEEEEESSSEEEEECCTTCCE-ECGGGCEECTTCCEEEEEESCTTGGGCTTSCCCEECTTC
T ss_pred             ccCCCcceeEEEeCCCCceEEEEeCCCCEEEEeCCCCcCC-CCCCCCCcCCCCEEEEEccCCCCccccCCCCCeEECCCC
Confidence            1 11123358999999999999999999999999998863 567778888899999999999999999999999999999


Q ss_pred             EEEEEEEEEEEee
Q 017992          346 TYKHHMVFKFSTS  358 (362)
Q Consensus       346 ~~~~~~~~~f~~~  358 (362)
                      +|++++.|+|+..
T Consensus       316 ~y~~~~~y~Fs~~  328 (329)
T d1lura_         316 HYCQEIVYTFSHV  328 (329)
T ss_dssp             CEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEecC
Confidence            9999999999864
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1k1xa2 b.30.5.8 (A:385-659) 4-alpha-glucanotransferase, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure