Citrus Sinensis ID: 017999

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--

MIFESVGPLKGSLGMRACGGCRRFLFFLPLVFFLPYLLSVLELHEKSVVEDLPRKNRQKFDHLILGPAAGQRLPNRLQCQDSRASNMVTVGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFFSSSSDISDMLCLILMSGRTKYDF

cccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEcccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccEEEEcccHHHHcccccccEEEEEEcccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccccccccEEcccccEEEEEEcccccccccccccccccccccEEEEEEEcccHHHcHHHHHHHcccccccccHHHHcccccccccc

ccEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccccccEEccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccEEEEccHHHHHHcccccEEEEEEEcccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHccccEEEEEcccEEcccccccccccccccccEEEEEEcccHHHHHHHHHHHHcccccHHHHHHHHHHcccccccc

mifesvgplkgslgmracggcrrflfflpLVFFLPYLLSVLELHEksvvedlprknrqkfdhlilgpaagqrlpnrlqcqdsrasnmvtvgnasysktERSMAILNVFINFIqvtmpksdvfiltdpasdlsmprkgvtiypihgeysrDKLMLQRIRSYITFLERRIREhsqgqghinhyvftdsdiavvdDLGHIFHDYQNFHLALTfrnnkdqplnsgfiavrgtpdgISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVkshpsfdarrftkaqpfveDIIGASVLflpcatynwtppegagqfhgmpldvKVVHFKGSRKRLMLEswnffssssdiSDMLCLILMsgrtkydf

mifesvgplkgslgMRACGGCRRFLFFLPLVFFLPYLLSVLELHEKSVVEDLPRKNRQKFDHLilgpaagqrlpNRLQCQDSRASNMVTVGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTdpasdlsmprkgvtiypihgeysrdklmLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFfssssdisdMLCLILMsgrtkydf

MIFESVGPLKGSLGMRACGGCRRflfflplvfflpyllsvlELHEKSVVEDLPRKNRQKFDHLILGPAAGQRLPNRLQCQDSRASNMVTVGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNffssssdisdMLCLILMSGRTKYDF

**********GSLGMRACGGCRRFLFFLPLVFFLPYLLSVLELHEKSVVEDLP****QKFDHLILGPA**************************Y**TERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFFSSSSDISDMLCLILMS*******

******GPLKGSLGMRACGGCRRFLFFLPLVFFLPYLLSVLEL*******************LILGPA**************RASNMVTVGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIRE****QGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDA**********EDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFFSSSSDISDMLCLILMSGR*****

****SV*PLKGSLGMRACGGCRRFLFFLPLVFFLPYLLSVLELHEKSVVEDLPR*NRQKFDHLILGPAAGQRLPNRLQCQDSRASNMVTVGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFFSSSSDISDMLCLILMSGRT****

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iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		362
225454022		388	PREDICTED: uncharacterized protein LOC10	0.961	0.896	0.711	1e-159
224129974		369	predicted protein [Populus trichocarpa]	0.908	0.891	0.719	1e-150
255562808		388	conserved hypothetical protein [Ricinus	0.953	0.889	0.682	1e-148
255541282		388	conserved hypothetical protein [Ricinus	0.953	0.889	0.680	1e-147
356545145		432	PREDICTED: uncharacterized protein LOC10	0.961	0.805	0.656	1e-141
449432261		387	PREDICTED: uncharacterized protein LOC10	0.856	0.801	0.68	1e-134
357471691		350	hypothetical protein MTR_4g053430 [Medic	0.842	0.871	0.700	1e-133
356517294		352	PREDICTED: uncharacterized protein LOC10	0.867	0.892	0.673	1e-131
297828243		391	hypothetical protein ARALYDRAFT_903971 [	0.953	0.882	0.618	1e-127
30689992		392	uncharacterized protein [Arabidopsis tha	0.953	0.880	0.608	1e-127

>gi\|225454022\|ref\|XP_002281030.1\| PREDICTED: uncharacterized protein LOC100259142 [Vitis vinifera] gi\|296089202\|emb\|CBI38905.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 276/388 (71%), Positives = 306/388 (78%), Gaps = 40/388 (10%)

Query: 15  MRACGGCRRFLFFLPLVFFLPYLLSVLELHEKSVVEDLPRKNRQKFDHLILGPAAGQRLP 74
           MR C G RR L+ LP V F+PY LSVLELH+ S +E   +K+ +KFDHL+LGPAAGQ L 
Sbjct: 1   MRVCSGWRRRLYCLPFVLFIPYFLSVLELHQSSTIEGSQKKHSKKFDHLVLGPAAGQGLH 60

Query: 75  NRLQCQ----------------------------------------DSRASNMVTVGNAS 94
           +RLQCQ                                        D R+S++VTVGNAS
Sbjct: 61  DRLQCQGTKALNKTHIATSSHESNFGESIALITVFTIYNSSLALHADGRSSDLVTVGNAS 120

Query: 95  YSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLML 154
           YSK ERSMAILNVFINFIQ TMP+S+V ILTDPAS+ S+ R  VTIYPI GEYSRDKLML
Sbjct: 121 YSKMERSMAILNVFINFIQATMPQSNVIILTDPASEFSLHRDRVTIYPIQGEYSRDKLML 180

Query: 155 QRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNK 214
           QRIRSYI FLE ++ EHSQG GHINHY+FTDSDIAVVDDLG IF  + NFH+ALTFRNNK
Sbjct: 181 QRIRSYIVFLETKLEEHSQGHGHINHYIFTDSDIAVVDDLGQIFQSHPNFHVALTFRNNK 240

Query: 215 DQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFD 274
           +QPLNSGFIAVRGTPDGI RAK+FL+EVL+VYSS++MNASRMLGDQLALAWVVKSHP FD
Sbjct: 241 EQPLNSGFIAVRGTPDGILRAKLFLQEVLKVYSSRFMNASRMLGDQLALAWVVKSHPYFD 300

Query: 275 ARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLE 334
            +RF+K Q F+EDI G SVLFLPCA YNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLE
Sbjct: 301 TKRFSKPQAFLEDIGGTSVLFLPCAIYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLE 360

Query: 335 SWNFFSSSSDISDMLCLILMSGRTKYDF 362
           SWNFF SSSDISDMLCLILMSGRTKYDF
Sbjct: 361 SWNFFISSSDISDMLCLILMSGRTKYDF 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224129974\|ref\|XP_002320717.1\| predicted protein [Populus trichocarpa] gi\|222861490\|gb\|EEE99032.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255562808\|ref\|XP_002522409.1\| conserved hypothetical protein [Ricinus communis] gi\|223538294\|gb\|EEF39901.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|255541282\|ref\|XP_002511705.1\| conserved hypothetical protein [Ricinus communis] gi\|223548885\|gb\|EEF50374.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356545145\|ref\|XP_003541005.1\| PREDICTED: uncharacterized protein LOC100785469 [Glycine max]	Back alignment and taxonomy information

>gi\|449432261\|ref\|XP_004133918.1\| PREDICTED: uncharacterized protein LOC101215082 [Cucumis sativus] gi\|449480062\|ref\|XP_004155788.1\| PREDICTED: uncharacterized protein LOC101230110 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357471691\|ref\|XP_003606130.1\| hypothetical protein MTR_4g053430 [Medicago truncatula] gi\|355507185\|gb\|AES88327.1\| hypothetical protein MTR_4g053430 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356517294\|ref\|XP_003527323.1\| PREDICTED: uncharacterized protein LOC100794487 [Glycine max]	Back alignment and taxonomy information

>gi\|297828243\|ref\|XP_002882004.1\| hypothetical protein ARALYDRAFT_903971 [Arabidopsis lyrata subsp. lyrata] gi\|297327843\|gb\|EFH58263.1\| hypothetical protein ARALYDRAFT_903971 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30689992\|ref\|NP_850432.1\| uncharacterized protein [Arabidopsis thaliana] gi\|330255444\|gb\|AEC10538.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		362
TAIR\|locus:2050911		392	AT2G45320 "AT2G45320" [Arabido	0.765	0.706	0.722	4.2e-115

TAIR\|locus:2050911 AT2G45320 "AT2G45320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1050 (374.7 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
 Identities = 203/281 (72%), Positives = 232/281 (82%)

Query:    83 RASNMVTV-GNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIY 141
             ++SN V+V GN +YSK ERSMA+LN F NFIQVTMPKS+V ILTDPASDLS+ +  V + 
Sbjct:   115 KSSNPVSVVGNVTYSKPERSMAVLNAFANFIQVTMPKSNVVILTDPASDLSIQQSNVILQ 174

Query:   142 PIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDY 201
             P+ G+YSR  LMLQRIRSYITFLE ++ ++   +G INHY+FTDSDIAVVDD+G IF  +
Sbjct:   175 PVQGDYSRGNLMLQRIRSYITFLEMKLEKN---EGGINHYIFTDSDIAVVDDVGTIFDKH 231

Query:   202 QNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQL 261
              +FHLALTFRNNKDQPLNSGFIAVRGT +GI RAK+FLEEVL+ Y +KYM ASRMLGDQL
Sbjct:   232 SSFHLALTFRNNKDQPLNSGFIAVRGTREGILRAKVFLEEVLKAYKTKYMKASRMLGDQL 291

Query:   262 ALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKV 321
             AL  VVKSH SFDA+RFTK Q F E+I GASVLFLPCA YNWTPPEGAGQFHGMPLDVK+
Sbjct:   292 ALVSVVKSHASFDAKRFTKPQAFTEEIAGASVLFLPCALYNWTPPEGAGQFHGMPLDVKI 351

Query:   322 VHFKGSRKRLMLESWNXXXXXXXXXXMLCLILMSGRTKYDF 362
             VHFKGSRKRLMLE+WN          MLCL+L SGRTKYDF
Sbjct:   352 VHFKGSRKRLMLEAWNFYKSTSNIPDMLCLVLGSGRTKYDF 392

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026413001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (388 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		362
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	99.29
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	99.25
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	99.15
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	99.1
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	98.83
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	98.75
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	98.71
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	98.64
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	98.61
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	98.51
PLN00176		333	galactinol synthase	98.47
PLN02769		629	Probable galacturonosyltransferase	98.14
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	98.02
PLN02718		603	Probable galacturonosyltransferase	97.92
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	97.8
PLN02523		559	galacturonosyltransferase	97.78
PLN02870		533	Probable galacturonosyltransferase	97.68
PLN02659		534	Probable galacturonosyltransferase	97.68
PLN02867		535	Probable galacturonosyltransferase	97.55
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	97.48
PLN02829		639	Probable galacturonosyltransferase	97.33
PF05637		239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	97.09
PLN02742		534	Probable galacturonosyltransferase	96.84
PF03414		337	Glyco_transf_6: Glycosyltransferase family 6; Inte	92.44
cd02515		271	Glyco_transf_6 Glycosyltransferase family 6 compri	92.11
PF05704		276	Caps_synth: Capsular polysaccharide synthesis prot	87.05

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

Probab=99.29  E-value=3.8e-11  Score=108.06  Aligned_cols=190  Identities=23%  Similarity=0.311  Sum_probs=119.6

Q ss_pred             HHHHHHHHhhCC-CccEEEEeCCCCCC---CC------CCCCeEEEecCCccCchhH---HHHHHHHHHHHHHHHHHHhc
Q 017999          106 NVFINFIQVTMP-KSDVFILTDPASDL---SM------PRKGVTIYPIHGEYSRDKL---MLQRIRSYITFLERRIREHS  172 (362)
Q Consensus       106 ~~Fi~sirvsmP-~snVVILTD~~T~~---sl------~~~r~~v~pi~g~YSR~~L---mlQRi~sYi~fLkT~i~e~~  172 (362)
                      -+=|.||...++ .-++.||||.-++-   .+      .+.++++++++.......-   ..-...+|.++.   |.++-
T Consensus        17 ~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~---i~~ll   93 (246)
T cd00505          17 IVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLH---LPNLV   93 (246)
T ss_pred             HHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccccceeHHHH---HHHHh
Confidence            445678877776 46899999875541   11      1235688888532221100   011223445543   33331


Q ss_pred             cCCCccccEEEeecCeeeecCchhhhccC-CCeeEEEe-----------eec-----CCCCcCcceEEEEeCCCCchhHH
Q 017999          173 QGQGHINHYVFTDSDIAVVDDLGHIFHDY-QNFHLALT-----------FRN-----NKDQPLNSGFIAVRGTPDGISRA  235 (362)
Q Consensus       173 ~~~~~i~dfIFiDsDiaVvDdLg~IFk~~-PdFHvALT-----------fRn-----nkdqPiNSGfIfVRgt~d~~~~A  235 (362)
                         ...+-+|++|+||+|.+||.++|+.- .+..+|..           ++.     ..+..+||||+.+.  .+ .-+-
T Consensus        94 ---p~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsGVmlin--l~-~~r~  167 (246)
T cd00505          94 ---PDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSGVFVVN--LS-KERR  167 (246)
T ss_pred             ---hccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeeeeEEEe--ch-HHHH
Confidence               14789999999999999999999972 33455542           000     12357999999996  33 2223


Q ss_pred             HHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCCCCCCCCcccc-
Q 017999          236 KIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHG-  314 (362)
Q Consensus       236 ~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtppegaGQfhg-  314 (362)
                      .++.+++++.|...-  .+-..+||-+|+.+.+.++                   ..+..|||. ||+.+.   +.+.. 
T Consensus       168 ~~~~~~~~~~~~~~~--~~~~~~DQd~LN~~~~~~~-------------------~~i~~L~~~-wN~~~~---~~~~~~  222 (246)
T cd00505         168 NQLLKVALEKWLQSL--SSLSGGDQDLLNTFFKQVP-------------------FIVKSLPCI-WNVRLT---GCYRSL  222 (246)
T ss_pred             HHHHHHHHHHHHhhc--ccCccCCcHHHHHHHhcCC-------------------CeEEECCCe-eeEEec---Cccccc
Confidence            567777777665431  3457799999999886432                   568999986 999843   22211 


Q ss_pred             -----CCcceeEEeeeccch
Q 017999          315 -----MPLDVKVVHFKGSRK  329 (362)
Q Consensus       315 -----mPldvKVlHFKGsRK  329 (362)
                           ...+.|||||-|+.|
T Consensus       223 ~~~~~~~~~~~iiHy~g~~K  242 (246)
T cd00505         223 NCFKAFVKNAKVIHFNGPTK  242 (246)
T ss_pred             cchhhhcCCCEEEEeCCCCC
Confidence                 344899999999866

Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens	Back alignment and domain information

>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		362
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 54/361 (14%), Positives = 108/361 (29%), Gaps = 92/361 (25%)

Query: 33  FLPYLLSVLELHEKSVVEDLPRK--NRQKFDHLILGPAAGQRLPNRLQCQDSRASNMV-- 88
           F    +   +  +   V+D+P+   ++++ DH+I+   A            S+   MV  
Sbjct: 25  FEDAFVDNFDCKD---VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 89  ---TVGNASYS---------------KTERSMAILNVFINFIQVTMPKSDVFI------L 124
               V   +Y                 T   +   +   N  QV   K +V        L
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKL 140

Query: 125 TDPASDLSMPRKGVTIYPIHGEYSRDK--LMLQRIRSYITFLERRIREHSQGQGH---IN 179
                +L  P K V    I G     K  + L    SY      +++     +     + 
Sbjct: 141 RQALLELR-PAKNVL---IDGVLGSGKTWVALDVCLSY------KVQCKMDFKIFWLNLK 190

Query: 180 HYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFL 239
           +    ++ + ++  L +      N+       +N    ++             +  +  L
Sbjct: 191 NCNSPETVLEMLQKLLYQID--PNWTSRSDHSSNIKLRIH----------SIQAELRRLL 238

Query: 240 EE--------VLR-VYSSKYMNA----SRML------GDQLALAWVVKSHPSFDARR--F 278
           +         VL  V ++K  NA     ++L           L+    +H S D      
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 279 TKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNF 338
           T  +  V+ ++    L          P E        P  + ++       R  L +W+ 
Sbjct: 299 TPDE--VKSLL-LKYLDCRPQD---LPREVLT---TNPRRLSII---AESIRDGLATWDN 346

Query: 339 F 339
           +
Sbjct: 347 W 347

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		362
3tzt_A		276	Glycosyl transferase family 8; structural genomics	99.23
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	99.06
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	99.04
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	98.88
3ioh_A		298	Histo-blood group ABO system transferase; GTA, cis	91.95
1o7q_A		289	N-acetyllactosaminide alpha-1,3- galactosyltransfe	90.79
4ayl_A		246	BOGT-metal-independent glycosyltransferase; histo-	87.08

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Probab=99.23  E-value=5.1e-11  Score=108.72  Aligned_cols=209  Identities=16%  Similarity=0.201  Sum_probs=114.1

Q ss_pred             cceEecccccccchhhhHHHHHHHHHHHhhCCC--ccEEEEeCCCCCCCC---------CCCCeEEEecCCccCchhHHH
Q 017999           86 NMVTVGNASYSKTERSMAILNVFINFIQVTMPK--SDVFILTDPASDLSM---------PRKGVTIYPIHGEYSRDKLML  154 (362)
Q Consensus        86 ~~v~vg~~~y~k~~r~~avl~~Fi~sirvsmP~--snVVILTD~~T~~sl---------~~~r~~v~pi~g~YSR~~Lml  154 (362)
                      +.+...+..|-      .-+-+-|.||...+|+  -.+.||+|.-++-..         .+-.+.++.++.+.=+..-..
T Consensus         7 ~I~~~~d~~Y~------~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (276)
T 3tzt_A            7 ALLLTLDENYI------PQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFAKVT   80 (276)
T ss_dssp             EEEEECCGGGH------HHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC----------
T ss_pred             EEEEEeCHhHH------HHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcCccc
Confidence            44566677773      2345567899999994  466789987664321         122456676664221111112


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhcc-CCCeeEEEe--ee-------------cCCCCcC
Q 017999          155 QRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHD-YQNFHLALT--FR-------------NNKDQPL  218 (362)
Q Consensus       155 QRi~sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~-~PdFHvALT--fR-------------nnkdqPi  218 (362)
                      +|+ +...|.+-.+.++-  ++..+-.|++|+|++|.+||.++|+. ..+..+|..  ..             +..+..+
T Consensus        81 ~~~-s~~~~~rl~~~~l~--p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yf  157 (276)
T 3tzt_A           81 DRY-PKEMYYRLLAGEFL--PENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYY  157 (276)
T ss_dssp             ----CHHHHHHHTHHHHS--CTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CE
T ss_pred             ccc-CHHHHHHHHHHHHc--ccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeE
Confidence            232 23445444455441  12468999999999999999999996 222234442  00             0123679


Q ss_pred             cceEEEEeCCCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeec
Q 017999          219 NSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPC  298 (362)
Q Consensus       219 NSGfIfVRgt~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC  298 (362)
                      ||||+.+-  .+ .-|...+.+++++... ++- .+-.+|||-.|+.+.+.                      .+..|||
T Consensus       158 NsGV~lin--l~-~~R~~~~~~~~~~~~~-~~~-~~~~~~DQd~LN~~f~~----------------------~~~~Lp~  210 (276)
T 3tzt_A          158 NSGLLLIN--LK-RAREEIDPDEIFSFVE-DNH-MNLLLPDQDILNAMYGD----------------------RIYPLDD  210 (276)
T ss_dssp             EEEEEEEE--HH-HHHHHCCHHHHHHHHH-HC---------CHHHHHHHGG----------------------GEEEEEH
T ss_pred             EeeEEEEE--HH-HHHhhhHHHHHHHHHH-hcc-ccccCCChhHHHHHHhC----------------------CEEECCc
Confidence            99999995  22 1122334555544322 221 23457999999977631                      3899999


Q ss_pred             ccccCCCCCC-------CCcc--ccCCcceeEEeeeccchh
Q 017999          299 ATYNWTPPEG-------AGQF--HGMPLDVKVVHFKGSRKR  330 (362)
Q Consensus       299 ~~YNwtppeg-------aGQf--hgmPldvKVlHFKGsRKr  330 (362)
                      ..|||.+-..       +++.  .-.-.+.+||||-|+.|=
T Consensus       211 ~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KP  251 (276)
T 3tzt_A          211 LIYNYDARNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKP  251 (276)
T ss_dssp             HHHSEETTCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCT
T ss_pred             hheeeecccchhhhccccchhhhhhhccCCeEEEECCCCCC
Confidence            9999985211       1110  001236899999998773

PyMOL of 3tzt

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...	Back alignment and structure

>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...	Back alignment and structure

>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		362
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	99.04
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	98.81
d1lzia_		283	Glycosyltransferase A catalytic domain {Human (Hom	95.14
d1o7qa_		287	alpha-1,3-galactosyltransferase catalytic domain {	91.79

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=99.04  E-value=2.1e-10  Score=99.81  Aligned_cols=156  Identities=16%  Similarity=0.205  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHHhhCCCc--cEEEEeCCCCCCCC---------CCCCeEEEecCCc-cCchhHHHHH--HHHHHHHHHHH
Q 017999          102 MAILNVFINFIQVTMPKS--DVFILTDPASDLSM---------PRKGVTIYPIHGE-YSRDKLMLQR--IRSYITFLERR  167 (362)
Q Consensus       102 ~avl~~Fi~sirvsmP~s--nVVILTD~~T~~sl---------~~~r~~v~pi~g~-YSR~~LmlQR--i~sYi~fLkT~  167 (362)
                      ..-+.+-|.||...+|+.  ++.||+|.-++...         .+-.+.++++..+ ....+....+  ...|.+++   
T Consensus        12 ~~~~~~~i~SL~~~~~~~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~---   88 (282)
T d1ga8a_          12 AAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRHISITTYARLK---   88 (282)
T ss_dssp             HHHHHHHHHHHHHHCTTSCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGTTSCCCCTTCCGGGGGGGG---
T ss_pred             HHHHHHHHHHHHHHCcCCCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhccccccccccCHHHHHHHH---
Confidence            445677889999999987  46788887554321         1235677776422 1110111112  22344433   


Q ss_pred             HHHhccCCCccccEEEeecCeeeecCchhhhcc-CCCeeEEEe---ee------------cCCCCcCcceEEEEeCCCCc
Q 017999          168 IREHSQGQGHINHYVFTDSDIAVVDDLGHIFHD-YQNFHLALT---FR------------NNKDQPLNSGFIAVRGTPDG  231 (362)
Q Consensus       168 i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~-~PdFHvALT---fR------------nnkdqPiNSGfIfVRgt~d~  231 (362)
                      |.++   ....+.+|++|+||+|.+||.++|+. ..+..+|..   +.            .+.+..+||||+.+-  .+ 
T Consensus        89 l~~~---lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGVml~n--~~-  162 (282)
T d1ga8a_          89 LGEY---IADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLIN--LK-  162 (282)
T ss_dssp             HHHH---CCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEEEC--HH-
T ss_pred             Hhhh---CCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhhhHHHhCCCCCCceeecceeeec--hh-
Confidence            3443   12357899999999999999999985 455556662   11            123456899999992  11 


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhh
Q 017999          232 ISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVK  268 (362)
Q Consensus       232 ~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk  268 (362)
                      .-+...+.+++.+...+.  ...-.++||-.|+.+.+
T Consensus       163 ~~r~~~~~~~~~~~~~~~--~~~~~~~DQd~LN~~f~  197 (282)
T d1ga8a_         163 KWRRHDIFKMSSEWVEQY--KDVMQYQDQDILNGLFK  197 (282)
T ss_dssp             HHTTSCHHHHHHHHHHHH--TTTCSSTHHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHHHHhc--ccCcccCchhHHHHHhc
Confidence            111223455555544332  13345799999998874

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure