Citrus Sinensis ID: 018010

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQVSS
ccccHHHHHHHHHHHHHHcccEEEEEEcEEEEEcccccccEEEccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccEEEcEEEEcHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcHHccccccccHHHHHHHHHHHHcccHHHHcccccccccccccHHHHHHHHHHccc
cccHHHHEEEEHHHHHHHHHccEEEEcccEEEEcHHHHccccHHHHHcccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHcccEEEEEEcccccccEEccccccccccccccccEEEcEEEEEccHHHHHHHHHHcccEEEEEEEcccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccEEEccEEEEEEccccccccHHHHHHccccccEcccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHccccHHHHHHHHHHccccHHHHHHHccccccccccHHHHHHHHHHHcc
MREKLGFLVGILFLLCGLSfgrfvveknslkvtspekikGVYECaignfgvpqyggtligtvvypkanqkackgfdevdlsfksrpgglptfllvdrgdcyfTLKAWNAQKGGAAAILvaddkteplitmdtpeeenadaeylqnitipsALISKSLGDSIKkslsggemvnmnldwtealphpderveyefwtnsndecgpkceSQIDFVKNFKGAAQILEQrgytqftphyitwycpeafilSKQCKsqcinhgrycapdpeqdfsrgydgkdVVVQNLRQACFFKVanesrkpwlwwDYVTDFaircpmkekkyTKECAEQVIKSLGVDlkkvdecvgdpeadvdnqvlkteqdaqvss
MREKLGFLVGILFLLCGLSFGRFVVEKnslkvtspekIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFkvanesrkpwlwwDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDEcvgdpeadvdnqvlkteqdaqvss
MREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQVSS
****LGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKT**L**************YLQNITIPSALIS***************MVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVG*********************
**EKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDA****
MREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLK*********
**EKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQVS*
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQVSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
P93026 623 Vacuolar-sorting receptor yes no 0.986 0.573 0.784 1e-169
O22925 625 Vacuolar-sorting receptor no no 0.994 0.576 0.718 1e-161
Q56ZQ3 628 Vacuolar-sorting receptor no no 0.939 0.541 0.738 1e-157
O80977 628 Vacuolar-sorting receptor no no 0.939 0.541 0.741 1e-157
P93484 623 Vacuolar-sorting receptor N/A no 0.977 0.568 0.714 1e-157
Q8L7E3 625 Vacuolar-sorting receptor no no 0.977 0.566 0.580 1e-126
Q9FYH7 631 Vacuolar-sorting receptor no no 0.966 0.554 0.568 1e-124
O64758 618 Vacuolar-sorting receptor no no 0.966 0.566 0.536 1e-115
Q4V3B8 540 Signal peptide peptidase- no no 0.201 0.135 0.405 2e-05
Q8W469 540 Signal peptide peptidase- no no 0.212 0.142 0.325 4e-05
>sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2 Back     alignment and function desciption
 Score =  594 bits (1531), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 280/357 (78%), Positives = 325/357 (91%)

Query: 4   KLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVV 63
           KLG       L+  L+ GRFVVEKN+LKVTSP+ IKG+YECAIGNFGVPQYGGTL+GTVV
Sbjct: 2   KLGLFTLSFLLILNLAMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVV 61

Query: 64  YPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDK 123
           YPK+NQKACK + + D+SFKS+PG LPTF+L+DRGDCYFTLKAW AQ+ GAAAILVAD K
Sbjct: 62  YPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSK 121

Query: 124 TEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPH 183
            EPLITMDTPEE+ +DA+YLQNITIPSALI+K+LGDSIK +LSGG+MVNM LDWTE++PH
Sbjct: 122 AEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPH 181

Query: 184 PDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFI 243
           PDERVEYE WTNSNDECG KC++QI+F+KNFKGAAQILE+ G+TQFTPHYITWYCPEAF 
Sbjct: 182 PDERVEYELWTNSNDECGKKCDTQIEFLKNFKGAAQILEKGGHTQFTPHYITWYCPEAFT 241

Query: 244 LSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYV 303
           LSKQCKSQCINHGRYCAPDPEQDF++GYDGKDVVVQNLRQAC ++V N++ KPW+WWDYV
Sbjct: 242 LSKQCKSQCINHGRYCAPDPEQDFTKGYDGKDVVVQNLRQACVYRVMNDTGKPWVWWDYV 301

Query: 304 TDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQV 360
           TDFAIRCPMKEKKYTKECA+ +IKSLG+DLKKVD+C+GDPEADV+N VLK EQ++Q+
Sbjct: 302 TDFAIRCPMKEKKYTKECADGIIKSLGIDLKKVDKCIGDPEADVENPVLKAEQESQI 358
Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles. Required for the sorting of 12S globulin, 2S albumin and maybe other seed storage proteins to protein storage vacuoles (PSVs) in seeds. May also be implicated in targeting N-terminal propeptide containing proteins to lytic vacuoles.
Arabidopsis thaliana (taxid: 3702)
>sp|O22925|VSR2_ARATH Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1 Back     alignment and function description
>sp|Q56ZQ3|VSR4_ARATH Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2 Back     alignment and function description
>sp|O80977|VSR3_ARATH Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1 Back     alignment and function description
>sp|P93484|VSR1_PEA Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1 Back     alignment and function description
>sp|Q8L7E3|VSR7_ARATH Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2 Back     alignment and function description
>sp|Q9FYH7|VSR6_ARATH Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=3 Back     alignment and function description
>sp|O64758|VSR5_ARATH Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1 Back     alignment and function description
>sp|Q4V3B8|SIPL3_ARATH Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1 Back     alignment and function description
>sp|Q8W469|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
224091118 625 predicted protein [Populus trichocarpa] 0.994 0.576 0.880 0.0
255575588 625 Vacuolar sorting receptor 1 precursor, p 0.994 0.576 0.880 0.0
359481218 624 PREDICTED: vacuolar-sorting receptor 1-l 0.994 0.576 0.852 0.0
83284015 621 vacuolar sorting receptor protein PV72-l 0.986 0.574 0.826 1e-180
147828306 625 hypothetical protein VITISV_015390 [Viti 0.972 0.563 0.831 1e-177
7484768 624 vacuolar sorting receptor protein homolo 0.994 0.576 0.8 1e-176
449439799 624 PREDICTED: vacuolar-sorting receptor 1-l 0.994 0.576 0.783 1e-173
297816574 623 hypothetical protein ARALYDRAFT_906663 [ 0.986 0.573 0.795 1e-169
242069735 627 hypothetical protein SORBIDRAFT_05g00116 0.980 0.566 0.778 1e-169
218186303 626 hypothetical protein OsI_37233 [Oryza sa 0.950 0.549 0.797 1e-169
>gi|224091118|ref|XP_002309184.1| predicted protein [Populus trichocarpa] gi|222855160|gb|EEE92707.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/360 (88%), Positives = 346/360 (96%)

Query: 1   MREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIG 60
           MREKLGFLVG+  LLCG  FGRFVVEKN+LK+TSP+ +KGVYECAIGNFGVPQYGGTL+G
Sbjct: 1   MREKLGFLVGVWLLLCGFCFGRFVVEKNNLKLTSPDSLKGVYECAIGNFGVPQYGGTLVG 60

Query: 61  TVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVA 120
           TV+YPKANQKACKGFD VD+SFKSRPGGLPTF+LVDRGDCYFTLKAWNAQ GGAAAILVA
Sbjct: 61  TVIYPKANQKACKGFDGVDISFKSRPGGLPTFVLVDRGDCYFTLKAWNAQNGGAAAILVA 120

Query: 121 DDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEA 180
           DDK EPLITMDTPEEENADA+YLQNITIPSALISKSLGDSIKK++S GEMVNMNLDWTEA
Sbjct: 121 DDKDEPLITMDTPEEENADADYLQNITIPSALISKSLGDSIKKAISNGEMVNMNLDWTEA 180

Query: 181 LPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPE 240
           LPHPDERVEYEFWTNSNDECGPKC+SQI+F+KNFKGAAQILEQ+GYTQFTPHYITWYCPE
Sbjct: 181 LPHPDERVEYEFWTNSNDECGPKCDSQIEFIKNFKGAAQILEQKGYTQFTPHYITWYCPE 240

Query: 241 AFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWW 300
           AF+LSKQCKSQCINHGRYCAPDPEQDFS+GYDGKDVVVQNLRQACF+KVANES+KPWLWW
Sbjct: 241 AFVLSKQCKSQCINHGRYCAPDPEQDFSKGYDGKDVVVQNLRQACFYKVANESKKPWLWW 300

Query: 301 DYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQV 360
           DYVTDF+IRCPMKEKKYTKECA+QVI+S+GVDLKK+D C+GD EADV+N+VLK EQ  Q+
Sbjct: 301 DYVTDFSIRCPMKEKKYTKECADQVIQSIGVDLKKIDICIGDHEADVENEVLKAEQHVQI 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255575588|ref|XP_002528694.1| Vacuolar sorting receptor 1 precursor, putative [Ricinus communis] gi|223531866|gb|EEF33683.1| Vacuolar sorting receptor 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359481218|ref|XP_002267833.2| PREDICTED: vacuolar-sorting receptor 1-like [Vitis vinifera] gi|297735537|emb|CBI18031.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|83284015|gb|ABC01915.1| vacuolar sorting receptor protein PV72-like protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|147828306|emb|CAN66483.1| hypothetical protein VITISV_015390 [Vitis vinifera] Back     alignment and taxonomy information
>gi|7484768|pir||T00044 vacuolar sorting receptor protein homolog PV72 - cucurbit gi|2943792|dbj|BAA25079.1| PV72 [Cucurbita cv. Kurokawa Amakuri] Back     alignment and taxonomy information
>gi|449439799|ref|XP_004137673.1| PREDICTED: vacuolar-sorting receptor 1-like [Cucumis sativus] gi|449497165|ref|XP_004160331.1| PREDICTED: vacuolar-sorting receptor 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297816574|ref|XP_002876170.1| hypothetical protein ARALYDRAFT_906663 [Arabidopsis lyrata subsp. lyrata] gi|297322008|gb|EFH52429.1| hypothetical protein ARALYDRAFT_906663 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|242069735|ref|XP_002450144.1| hypothetical protein SORBIDRAFT_05g001160 [Sorghum bicolor] gi|241935987|gb|EES09132.1| hypothetical protein SORBIDRAFT_05g001160 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|218186303|gb|EEC68730.1| hypothetical protein OsI_37233 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
TAIR|locus:2085136 623 VSR1 "vacuolar sorting recepto 0.986 0.573 0.784 1.3e-164
TAIR|locus:2046911 628 VSR3 "vaculolar sorting recept 0.983 0.566 0.719 1.1e-149
TAIR|locus:2046931 628 VSR4 "vacuolar sorting recepto 0.994 0.573 0.710 3e-149
TAIR|locus:2015726 631 VSR6 "VACUOLAR SORTING RECEPTO 0.966 0.554 0.577 1.1e-117
TAIR|locus:2044782 618 VSR5 "VACUOLAR SORTING RECEPTO 0.930 0.545 0.563 9e-109
TIGR_CMR|SO_3800 1215 SO_3800 "serine protease, subt 0.259 0.077 0.336 2.1e-06
TAIR|locus:2198733 536 SPPL5 "SIGNAL PEPTIDE PEPTIDAS 0.254 0.171 0.37 2.5e-05
TAIR|locus:2040971 540 SPPL3 "SIGNAL PEPTIDE PEPTIDAS 0.201 0.135 0.405 8.9e-05
UNIPROTKB|C9J8T4163 RNF13 "E3 ubiquitin-protein li 0.281 0.625 0.339 0.00027
UNIPROTKB|C9JYN7165 RNF13 "E3 ubiquitin-protein li 0.281 0.618 0.339 0.00031
TAIR|locus:2085136 VSR1 "vacuolar sorting receptor homolog 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1602 (569.0 bits), Expect = 1.3e-164, P = 1.3e-164
 Identities = 280/357 (78%), Positives = 325/357 (91%)

Query:     4 KLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVV 63
             KLG       L+  L+ GRFVVEKN+LKVTSP+ IKG+YECAIGNFGVPQYGGTL+GTVV
Sbjct:     2 KLGLFTLSFLLILNLAMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVV 61

Query:    64 YPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDK 123
             YPK+NQKACK + + D+SFKS+PG LPTF+L+DRGDCYFTLKAW AQ+ GAAAILVAD K
Sbjct:    62 YPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSK 121

Query:   124 TEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPH 183
              EPLITMDTPEE+ +DA+YLQNITIPSALI+K+LGDSIK +LSGG+MVNM LDWTE++PH
Sbjct:   122 AEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPH 181

Query:   184 PDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFI 243
             PDERVEYE WTNSNDECG KC++QI+F+KNFKGAAQILE+ G+TQFTPHYITWYCPEAF 
Sbjct:   182 PDERVEYELWTNSNDECGKKCDTQIEFLKNFKGAAQILEKGGHTQFTPHYITWYCPEAFT 241

Query:   244 LSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYV 303
             LSKQCKSQCINHGRYCAPDPEQDF++GYDGKDVVVQNLRQAC ++V N++ KPW+WWDYV
Sbjct:   242 LSKQCKSQCINHGRYCAPDPEQDFTKGYDGKDVVVQNLRQACVYRVMNDTGKPWVWWDYV 301

Query:   304 TDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQV 360
             TDFAIRCPMKEKKYTKECA+ +IKSLG+DLKKVD+C+GDPEADV+N VLK EQ++Q+
Sbjct:   302 TDFAIRCPMKEKKYTKECADGIIKSLGIDLKKVDKCIGDPEADVENPVLKAEQESQI 358
GO:0005509 "calcium ion binding" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005887 "integral to plasma membrane" evidence=ISS
GO:0006623 "protein targeting to vacuole" evidence=IGI;ISS;IMP;TAS
GO:0005886 "plasma membrane" evidence=ISS;IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA;TAS
GO:0009940 "amino-terminal vacuolar sorting propeptide binding" evidence=IDA
GO:0017119 "Golgi transport complex" evidence=IPI
GO:0007034 "vacuolar transport" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0006896 "Golgi to vacuole transport" evidence=ISS;IDA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2046911 VSR3 "vaculolar sorting receptor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046931 VSR4 "vacuolar sorting receptor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015726 VSR6 "VACUOLAR SORTING RECEPTOR 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044782 VSR5 "VACUOLAR SORTING RECEPTOR 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3800 SO_3800 "serine protease, subtilase family" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TAIR|locus:2198733 SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040971 SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|C9J8T4 RNF13 "E3 ubiquitin-protein ligase RNF13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JYN7 RNF13 "E3 ubiquitin-protein ligase RNF13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93026VSR1_ARATHNo assigned EC number0.78430.98610.5730yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
cd02125127 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) 7e-71
cd00538126 cd00538, PA, PA: Protease-associated (PA) domain 2e-17
cd02123153 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a 2e-16
cd04818118 cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas 2e-14
cd02132139 cd02132, PA_GO-like, PA_GO-like: Protease-associat 1e-13
pfam0222596 pfam02225, PA, PA domain 1e-11
cd04813117 cd04813, PA_1, PA_1: Protease-associated (PA) doma 2e-09
cd02129120 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as 3e-07
cd02127118 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease- 2e-06
cd02133143 cd02133, PA_C5a_like, PA_C5a_like: Protease-associ 6e-05
cd02126126 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as 7e-05
cd04816122 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease- 2e-04
cd02122138 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a 5e-04
>gnl|CDD|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information 
 Score =  216 bits (553), Expect = 7e-71
 Identities = 79/128 (61%), Positives = 97/128 (75%), Gaps = 1/128 (0%)

Query: 48  NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAW 107
           NFG+PQYGGTL G VVYPK N+  CK FD      KS PG  P  LL+DRG C+FTLKAW
Sbjct: 1   NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAW 60

Query: 108 NAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSG 167
           NAQ+ GAAA+LVAD+  EPL+TMDTPEE    A+Y++ ITIPSALI+K+ G+ +KK++S 
Sbjct: 61  NAQQAGAAAVLVADNVDEPLLTMDTPEES-GSADYIEKITIPSALITKAFGEKLKKAISN 119

Query: 168 GEMVNMNL 175
           GEMV + L
Sbjct: 120 GEMVVIKL 127

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 127
>gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain Back     alignment and domain information
>gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>gnl|CDD|216938 pfam02225, PA, PA domain Back     alignment and domain information
>gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>gnl|CDD|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>gnl|CDD|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>gnl|CDD|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
cd02125127 PA_VSR PA_VSR: Protease-associated (PA) domain-con 99.96
cd02123153 PA_C_RZF_like PA_C-RZF_ like: Protease-associated 99.89
cd02122138 PA_GRAIL_like PA _GRAIL_like: Protease-associated 99.89
cd02126126 PA_EDEM3_like PA_EDEM3_like: protease associated d 99.88
cd02127118 PA_hPAP21_like PA_hPAP21_like: Protease-associated 99.88
cd02132139 PA_GO-like PA_GO-like: Protease-associated domain 99.87
cd04813117 PA_1 PA_1: Protease-associated (PA) domain subgrou 99.83
cd02129120 PA_hSPPL_like PA_hSPPL_like: Protease-associated d 99.8
KOG3920193 consensus Uncharacterized conserved protein, conta 99.78
cd04816122 PA_SaNapH_like PA_SaNapH_like: Protease-associated 99.78
cd02130122 PA_ScAPY_like PA_ScAPY_like: Protease-associated d 99.77
cd04818118 PA_subtilisin_1 PA_subtilisin_1: Protease-associat 99.75
cd02124129 PA_PoS1_like PA_PoS1_like: Protease-associated (PA 99.69
cd04817139 PA_VapT_like PA_VapT_like: Protease-associated dom 99.66
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 99.65
cd00538126 PA PA: Protease-associated (PA) domain. The PA dom 99.55
PF02225101 PA: PA domain; InterPro: IPR003137 The PA (Proteas 99.55
KOG2442 541 consensus Uncharacterized conserved protein, conta 99.49
cd02133143 PA_C5a_like PA_C5a_like: Protease-associated domai 99.43
cd04819127 PA_2 PA_2: Protease-associated (PA) domain subgrou 99.36
cd04815134 PA_M28_2 PA_M28_2: Protease-associated (PA) domain 99.22
cd02120126 PA_subtilisin_like PA_subtilisin_like: Protease-as 99.15
cd02128183 PA_TfR PA_TfR: Protease-associated domain containi 98.91
cd02121220 PA_GCPII_like PA_GCPII_like: Protease-associated d 98.35
cd04822151 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do 98.22
cd04814142 PA_M28_1 PA_M28_1: Protease-associated (PA) domain 98.19
cd04820137 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do 98.07
cd02131153 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso 97.99
KOG2195 702 consensus Transferrin receptor and related protein 95.04
cd04821157 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do 93.78
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information 
Probab=99.96  E-value=3e-29  Score=214.23  Aligned_cols=127  Identities=62%  Similarity=1.063  Sum_probs=106.9

Q ss_pred             cCCCCCCCCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCc
Q 018010           48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPL  127 (362)
Q Consensus        48 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l  127 (362)
                      |||.|+||++++|.|+||+++.+||++++....+.+..+..+++|+||+||+|+|.+|++|||++||++|||||+.++++
T Consensus         1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~   80 (127)
T cd02125           1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL   80 (127)
T ss_pred             CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence            79999999999999999999999999987632122223457799999999999999999999999999999999988878


Q ss_pred             eecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEE
Q 018010          128 ITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL  175 (362)
Q Consensus       128 ~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l  175 (362)
                      ++|..|+++. ..++..+++||+++|++++|+.|++.+.+|..|+++|
T Consensus        81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~  127 (127)
T cd02125          81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL  127 (127)
T ss_pred             ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence            8887655421 1134467899999999999999999999999998875

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00538 PA PA: Protease-associated (PA) domain Back     alignment and domain information
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] Back     alignment and domain information
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 Back     alignment and domain information
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 Back     alignment and domain information
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases Back     alignment and domain information
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) Back     alignment and domain information
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like Back     alignment and domain information
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 Back     alignment and domain information
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 Back     alignment and domain information
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 Back     alignment and domain information
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) Back     alignment and domain information
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] Back     alignment and domain information
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 2e-19
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 4e-06
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 Back     alignment and structure
 Score = 84.1 bits (207), Expect = 2e-19
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 12/137 (8%)

Query: 44  CAIGNFGVPQYGGTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFL-LVDRGD- 99
              G +G       + G +V P       AC       +          ++L L+ RG  
Sbjct: 56  SEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGG 115

Query: 100 CYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGD 159
           C F  K   A + GA+  ++ +        +           +   + I + +I    G 
Sbjct: 116 CTFADKIHLAYERGASGAVIFNFPGTRNEVIPMS--------HPGAVDIVAIMIGNLKGT 167

Query: 160 SIKKSLSGGEMVNMNLD 176
            I +S+  G  V M ++
Sbjct: 168 KILQSIQRGIQVTMVIE 184
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 99.91
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 99.24
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 99.1
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 98.96
3kas_A 640 Transferrin receptor protein 1; transferrin recept 98.79
3i6s_A 649 Subtilisin-like protease; PA-domain, FN3-domain, h 98.08
1y9z_A441 Alkaline serine protease; subtilisin-like alpha/be 97.97
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 97.81
3vta_A621 Cucumisin; subtilisin-like fold, serine protease, 89.15
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
Probab=99.91  E-value=3.2e-23  Score=187.33  Aligned_cols=127  Identities=21%  Similarity=0.303  Sum_probs=104.0

Q ss_pred             ecceeccCCCCCCCCceeEEEeccC--CCccCCCCCCCCCCccC-CCCCCCCeEEEEecCC-CCHHHHHHHHHhcCCcEE
Q 018010           42 YECAIGNFGVPQYGGTLIGTVVYPK--ANQKACKGFDEVDLSFK-SRPGGLPTFLLVDRGD-CYFTLKAWNAQKGGAAAI  117 (362)
Q Consensus        42 ~~~~~a~FG~~~yg~~l~G~lv~~~--~~~~gC~~~~~~~~~~~-~~~~~~~~IvLV~RG~-CsF~~Kv~nAq~aGA~av  117 (362)
                      .....|+||...+.+.++|.|+++.  ++.+||++.+++..+.. .....+++|+||+||+ |+|.+|++|||++||+||
T Consensus        54 ~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~av  133 (194)
T 3icu_A           54 ELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGA  133 (194)
T ss_dssp             EEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEE
T ss_pred             ecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEE
Confidence            5567999999999999999999886  47899999876431110 0112468999999999 999999999999999999


Q ss_pred             EEEeCCC--CCceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEEEec
Q 018010          118 LVADDKT--EPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWT  178 (362)
Q Consensus       118 II~dn~~--~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~~~  178 (362)
                      ||||+..  +.+++|..++          ..+||++||++++|+.|+++|++|.+|+++|...
T Consensus       134 IIyNn~~~g~~~~~m~~~~----------~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg  186 (194)
T 3icu_A          134 VIFNFPGTRNEVIPMSHPG----------AVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVG  186 (194)
T ss_dssp             EEECCTTCTTCCCCCCCTT----------CCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEeCCCCCCceeeecCCC----------CCceeEEEECHHHHHHHHHHHHCCCeEEEEEECC
Confidence            9999852  3456886432          3579999999999999999999999999988873
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Back     alignment and structure
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Back     alignment and structure
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Back     alignment and structure
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
d1de4c2193 Transferrin receptor ectodomain, apical domain {Hu 98.78
d3bi1a2233 Glutamate carboxypeptidase II {Human (Homo sapiens 98.43
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=6.7e-09  Score=91.20  Aligned_cols=104  Identities=17%  Similarity=0.128  Sum_probs=68.7

Q ss_pred             CCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC--------
Q 018010           55 GGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP--------  126 (362)
Q Consensus        55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~--------  126 (362)
                      .++++|.+||.-   . +...+..  .+  ..+++|+|+|++||.++|.+|++|||++||+|||||.+..+.        
T Consensus        36 ~G~v~g~lVy~n---~-G~~~Df~--~L--~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~  107 (193)
T d1de4c2          36 AATVTGKLVHAN---F-GTKKDFE--DL--YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELS  107 (193)
T ss_dssp             CEEEEECEEECS---T-TCHHHHH--TC--SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCC
T ss_pred             CCceeEEEEEcc---C-CCHHHHH--Hh--ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccc
Confidence            358999999852   2 2221111  11  135689999999999999999999999999999999864320        


Q ss_pred             ce--ecCCCCcc-----cccc-------cccCCccceEEEEehHhHHHHHHHhh
Q 018010          127 LI--TMDTPEEE-----NADA-------EYLQNITIPSALISKSLGDSIKKSLS  166 (362)
Q Consensus       127 l~--tM~~p~~~-----~~~~-------~~~~~i~IPsv~Isk~~G~~L~~~l~  166 (362)
                      ..  ....++|-     ++.+       ....-.+||+.-||..+++.|++.|.
T Consensus       108 ~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         108 FFGHAHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             CCEECCSSSSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             cccccccCCCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence            00  00011210     0000       01123479999999999999999995
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure