Citrus Sinensis ID: 018014

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MHPSFKKVQMLESDNFITELNQPLNMATDPPFHQAYKSLIEDTSNNIFGKKLVLVEECELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADISASAAAFTTLSSTLEQFATTVAGLARKLTAILAEKLGRESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNSEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFLISH
ccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccEEEEEccccccccccccccccccccccccEEEEccccccEEEEEccEEEEcccccccEEEEcccEEHHHccccccccccccccccccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccc
cccccccHHHccccccccccccccccEEcccccccccccccccccccccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccEEEccccccEEcccccHHHccEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccEEcccHcccccccHHHHHHHHHHHcccccccccccEEEEcc
MHPSFKKVQMLESDNFitelnqplnmatdppfhQAYKSLIEDtsnnifgkKLVLVEECelplidlsrilhndnvvdesEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFkqpfdkkskedkfmnfpagsyrwgtptatclnqlswseafhipmadisaSAAAFTTLSSTLEQFATTVAGLARKLTAILAEKLgrestffqenclpstcylrmnryppcpvpsaihglmphtdsdflTILHQdevgglqlvkdgkwiavkpnpeaLIVNIGDLFQAWSNDVYKSVEhrvvtnpsterfsiayffcpsydtviqnsepsnyrkfsfrEFRLQVQEDVQKyghkvglprflish
MHPSFKKVQMLESDNFITELNQPLNMATDPPFHQAYKSLIEDTSNNIFGKKLVLVEECELPlidlsrilhndnvVDESEREECKEEIARasqqwgffqvTNHGISKDLLEKMREEQVKVfkqpfdkkskedkfmnfpagsyrwgtpTATCLNQLSWSEAFHIPMADISASAAAFTTLSSTLEQFATTVAGLARKLTAILAEKlgrestffqenCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNSEPSNYRKFSFREFRLQVQEDVqkyghkvglprflish
MHPSFKKVQMLESDNFITELNQPLNMATDPPFHQAYKSLIEDTSNNIFGKKLVLVEECELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIsasaaafttlsstlEQFATTVAGLARKLTAILAEKLGRESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNSEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFLISH
******************************PFHQAYKSLIEDTSNNIFGKKLVLVEECELPLIDLSRILHNDNVV***********IARASQQWGFFQVTNHGISKDLL***********************FMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADISASAAAFTTLSSTLEQFATTVAGLARKLTAILAEKLGRESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNSEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFL***
****FKK*********************DPPFHQAY*******************EECELPLIDLSRILHND********EECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSK********A*SYRWGTPTATCLNQLSWSEAFHIPMADISASAAAFTTLSSTLEQFATTVAGLARKLTAILAEKLGRESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNSEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFLIS*
MHPSFKKVQMLESDNFITELNQPLNMATDPPFHQAYKSLIEDTSNNIFGKKLVLVEECELPLIDLSRILHNDN**************ARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADISASAAAFTTLSSTLEQFATTVAGLARKLTAILAEKLGRESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNSEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFLISH
**************NFITELNQPLNMATDPPFHQAYKSLIEDTSN***GKKLVLVEECELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADISASAAAFTTLSSTLEQFATTVAGLARKLTAILAEKLGRESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNSEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFLI**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MHPSFKKVQMLESDNFITELNQPLNMATDPPFHQAYKSLIEDTSNNIFGKKLVLVEECELPLIDLSRILHNDxxxxxxxxxxxxxxxxxxxxxWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADISASAAAFTTLSSTLEQFATTVAGLARKLTAILAEKLGRESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNSEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFLISH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
O49561338 Gibberellin 2-beta-dioxyg yes no 0.892 0.955 0.651 1e-128
Q9C6I4336 Gibberellin 2-beta-dioxyg no no 0.911 0.982 0.422 2e-74
Q39110377 Gibberellin 20 oxidase 1 no no 0.734 0.705 0.333 2e-39
A2Z1W9322 1-aminocyclopropane-1-car N/A no 0.660 0.742 0.341 4e-38
Q0J1C1322 1-aminocyclopropane-1-car no no 0.660 0.742 0.341 5e-38
Q39224358 Protein SRG1 OS=Arabidops no no 0.754 0.762 0.318 8e-38
Q39112380 Gibberellin 20 oxidase 3 no no 0.715 0.681 0.318 2e-37
P31237319 1-aminocyclopropane-1-car N/A no 0.732 0.830 0.317 3e-37
Q84MB3365 1-aminocyclopropane-1-car no no 0.734 0.728 0.346 9e-37
Q06588323 1-aminocyclopropane-1-car no no 0.732 0.820 0.322 1e-36
>sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2 Back     alignment and function desciption
 Score =  459 bits (1181), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/341 (65%), Positives = 270/341 (79%), Gaps = 18/341 (5%)

Query: 29  DPPFHQAYKSLI--------EDTSNNIFGKKL-VLVEECELPLIDLSRILHNDNVVDESE 79
           DPPF++ Y +L+         D S   F   +  +VEE ELP+ID+SR++       E E
Sbjct: 2   DPPFNEIYNNLLYNQITKKDNDVSEIPFSFSVTAVVEEVELPVIDVSRLIDGA----EEE 57

Query: 80  REECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNFPAG 139
           RE+CKE IARAS++WGFFQV NHGIS D+LEKMR+EQ++VF++PFDKKSK +KF    AG
Sbjct: 58  REKCKEAIARASREWGFFQVINHGISMDVLEKMRQEQIRVFREPFDKKSKSEKF---SAG 114

Query: 140 SYRWGTPTATCLNQLSWSEAFHIPMADISASAAAFTTLSSTLEQFATTVAGLARKLTAIL 199
           SYRWGTP+AT + QLSWSEAFH+PM DIS +   FTTLSST+E+FA+    LA  L  +L
Sbjct: 115 SYRWGTPSATSIRQLSWSEAFHVPMTDISDNKD-FTTLSSTMEKFASESEALAYMLAEVL 173

Query: 200 AEKLGRESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQ 259
           AEK G+ S+FF+ENC+ +TCYLRMNRYPPCP PS ++GLMPHTDSDFLTIL+QD+VGGLQ
Sbjct: 174 AEKSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQ 233

Query: 260 LVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYD 319
           L+KD +WIAVKPNP+ALI+NIGDLFQAWSN +YKSVEHRV+TNP  ERFS AYF CPSYD
Sbjct: 234 LIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYD 293

Query: 320 TVIQ-NSEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFL 359
            VI+ +S+   YR FSFREFR QVQEDV+K+G KVGLPRFL
Sbjct: 294 AVIECSSDRPAYRNFSFREFRQQVQEDVKKFGFKVGLPRFL 334
Catalyzes the 2-beta-hydroxylation of gibberellins (GA) precursors, rendering them unable to be converted to active GAs. Hydroxylates the C20-GA GA12 and GA53, but is not active on C19-GAs, like GA1, GA4, GA9 and GA20.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 3
>sp|Q9C6I4|G2OX7_ARATH Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1 Back     alignment and function description
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|A2Z1W9|ACCO1_ORYSI 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|Q0J1C1|ACCO1_ORYSJ 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|Q39112|GAOX3_ARATH Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1 Back     alignment and function description
>sp|P31237|ACCO_ACTDE 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1 Back     alignment and function description
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q06588|ACCO4_ARATH 1-aminocyclopropane-1-carboxylate oxidase 4 OS=Arabidopsis thaliana GN=ACO4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
255555001331 gibberellin 20-oxidase, putative [Ricinu 0.911 0.996 0.732 1e-144
356540301339 PREDICTED: gibberellin 2-beta-dioxygenas 0.903 0.964 0.703 1e-137
357480747332 Gibberellin 2-beta-dioxygenase [Medicago 0.906 0.987 0.694 1e-136
225444393344 PREDICTED: gibberellin 2-beta-dioxygenas 0.936 0.985 0.668 1e-136
302144063421 unnamed protein product [Vitis vinifera] 0.944 0.812 0.665 1e-136
87240601339 2OG-Fe(II) oxygenase [Medicago truncatul 0.919 0.982 0.663 1e-130
297804032338 predicted protein [Arabidopsis lyrata su 0.892 0.955 0.662 1e-129
356575799366 PREDICTED: gibberellin 2-beta-dioxygenas 0.922 0.912 0.635 1e-127
145340471338 gibberellin 2-beta-dioxygenase 8 [Arabid 0.892 0.955 0.651 1e-126
116831379339 unknown [Arabidopsis thaliana] 0.892 0.952 0.651 1e-126
>gi|255555001|ref|XP_002518538.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223542383|gb|EEF43925.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/336 (73%), Positives = 284/336 (84%), Gaps = 6/336 (1%)

Query: 26  MATDPPFHQAYKSLIEDTSNNIFGKKLVLVEECELPLIDLSRILHNDNVVDESEREECKE 85
           M  DPPFH+ YK+L+   +      K  +VEECELPLIDL R+    ++ DE E+++CK+
Sbjct: 1   MDIDPPFHEIYKTLLNSKTIQESETKSSIVEECELPLIDLGRL----SMDDELEKDKCKQ 56

Query: 86  EIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNFPAGSYRWGT 145
           EIARASQ WGFFQV NHGIS+++LEKMR EQVK+FKQPF +KSKEDKF+ F AG+YRWGT
Sbjct: 57  EIARASQDWGFFQVVNHGISREILEKMRSEQVKLFKQPFYQKSKEDKFLKFSAGTYRWGT 116

Query: 146 PTATCLNQLSWSEAFHIPMADISASAAAFTTLSSTLEQFATTVAGLARKLTAILAEKLGR 205
           PTATCL+QLSWSEAFHIPM DISAS   FTT SST+EQFATTVA LA+KL  ILAEKL R
Sbjct: 117 PTATCLSQLSWSEAFHIPMTDISASNG-FTTFSSTMEQFATTVANLAQKLAGILAEKLDR 175

Query: 206 ESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGK 265
           +STFF+ENCLPSTCYLR+NRYPPCP+P  + GLMPHTDSDFLTILHQD+VGGLQLVKD K
Sbjct: 176 KSTFFEENCLPSTCYLRLNRYPPCPIPVEVCGLMPHTDSDFLTILHQDQVGGLQLVKDRK 235

Query: 266 WIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNS 325
           W AVKPNPEALI+NIGDLFQAWSNDVYKSV+HRVVTNP  ERFS AYFFCPSYDT I++ 
Sbjct: 236 WFAVKPNPEALIINIGDLFQAWSNDVYKSVQHRVVTNPGVERFSTAYFFCPSYDTEIESG 295

Query: 326 -EPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFLI 360
            EPS Y+KFSF+E+R QVQ+DVQ  GHKVGL RF++
Sbjct: 296 CEPSVYKKFSFQEYREQVQKDVQILGHKVGLLRFIV 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356540301|ref|XP_003538628.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|357480747|ref|XP_003610659.1| Gibberellin 2-beta-dioxygenase [Medicago truncatula] gi|355511994|gb|AES93617.1| Gibberellin 2-beta-dioxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|225444393|ref|XP_002268173.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302144063|emb|CBI23168.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|87240601|gb|ABD32459.1| 2OG-Fe(II) oxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297804032|ref|XP_002869900.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315736|gb|EFH46159.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356575799|ref|XP_003556024.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|145340471|ref|NP_193852.2| gibberellin 2-beta-dioxygenase 8 [Arabidopsis thaliana] gi|259016235|sp|O49561.2|G2OX8_ARATH RecName: Full=Gibberellin 2-beta-dioxygenase 8; AltName: Full=GA 2-oxidase 8; AltName: Full=Gibberellin 2-beta-hydroxylase 8; AltName: Full=Gibberellin 2-oxidase 8 gi|91806706|gb|ABE66080.1| oxidoreductase 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gi|332659020|gb|AEE84420.1| gibberellin 2-beta-dioxygenase 8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116831379|gb|ABK28642.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
TAIR|locus:2127403338 GA2OX8 "gibberellin 2-oxidase 0.892 0.955 0.630 6.6e-113
TAIR|locus:2036386336 GA2OX7 "gibberellin 2-oxidase 0.911 0.982 0.416 2.4e-67
TAIR|locus:2178783352 AT5G58660 [Arabidopsis thalian 0.480 0.494 0.423 6.6e-41
TAIR|locus:2085879349 AT3G19010 [Arabidopsis thalian 0.419 0.435 0.398 1.4e-40
TAIR|locus:2085864352 AT3G19000 [Arabidopsis thalian 0.422 0.434 0.429 1.5e-39
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.754 0.75 0.331 2.4e-37
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.701 0.727 0.365 8e-37
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.734 0.764 0.346 2.1e-36
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.765 0.746 0.333 3.5e-36
TAIR|locus:2005511377 GA20OX1 [Arabidopsis thaliana 0.734 0.705 0.329 9.2e-36
TAIR|locus:2127403 GA2OX8 "gibberellin 2-oxidase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
 Identities = 215/341 (63%), Positives = 261/341 (76%)

Query:    29 DPPFHQAYKSLI--------EDTSNNIFGKKLV-LVEECELPLIDLSRILHNDNVVDESE 79
             DPPF++ Y +L+         D S   F   +  +VEE ELP+ID+SR++  D    E E
Sbjct:     2 DPPFNEIYNNLLYNQITKKDNDVSEIPFSFSVTAVVEEVELPVIDVSRLI--DGA--EEE 57

Query:    80 REECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNFPAG 139
             RE+CKE IARAS++WGFFQV NHGIS D+LEKMR+EQ++VF++PFDKKSK +KF    AG
Sbjct:    58 REKCKEAIARASREWGFFQVINHGISMDVLEKMRQEQIRVFREPFDKKSKSEKFS---AG 114

Query:   140 SYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGLARKLTAIL 199
             SYRWGTP+AT + QLSWSEAFH+PM DI              E+FA+    LA  L  +L
Sbjct:   115 SYRWGTPSATSIRQLSWSEAFHVPMTDISDNKDFTTLSSTM-EKFASESEALAYMLAEVL 173

Query:   200 AEKLGRESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQ 259
             AEK G+ S+FF+ENC+ +TCYLRMNRYPPCP PS ++GLMPHTDSDFLTIL+QD+VGGLQ
Sbjct:   174 AEKSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQ 233

Query:   260 LVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYD 319
             L+KD +WIAVKPNP+ALI+NIGDLFQAWSN +YKSVEHRV+TNP  ERFS AYF CPSYD
Sbjct:   234 LIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYD 293

Query:   320 TVIQ-NSEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFL 359
              VI+ +S+   YR FSFREFR QVQEDV+K+G KVGLPRFL
Sbjct:   294 AVIECSSDRPAYRNFSFREFRQQVQEDVKKFGFKVGLPRFL 334
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009685 "gibberellin metabolic process" evidence=IDA
GO:0052634 "C-19 gibberellin 2-beta-dioxygenase activity" evidence=IDA
GO:0052635 "C-20 gibberellin 2-beta-dioxygenase activity" evidence=IDA
TAIR|locus:2036386 GA2OX7 "gibberellin 2-oxidase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178783 AT5G58660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085879 AT3G19010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085864 AT3G19000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005511 GA20OX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O49561G2OX8_ARATH1, ., 1, 4, ., 1, 1, ., 1, 30.65100.89220.9556yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.963
3rd Layer1.14.11.130.946
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-71
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-58
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 9e-56
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 9e-56
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-55
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 4e-52
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-51
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-50
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 5e-49
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 7e-49
PLN02216357 PLN02216, PLN02216, protein SRG1 8e-47
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 3e-44
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 4e-43
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-42
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 4e-38
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 8e-37
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 2e-35
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 7e-34
PLN02704335 PLN02704, PLN02704, flavonol synthase 5e-33
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 6e-33
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 6e-29
PLN02904357 PLN02904, PLN02904, oxidoreductase 3e-28
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-27
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 1e-25
PLN02997325 PLN02997, PLN02997, flavonol synthase 4e-21
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 4e-21
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 8e-19
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 0.002
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  226 bits (577), Expect = 2e-71
 Identities = 117/355 (32%), Positives = 180/355 (50%), Gaps = 46/355 (12%)

Query: 30  PPFHQAYKSLIEDTSNNIFGKKLVLVEECELPLIDLSRILHNDNVVDESEREECKEEIAR 89
           P F      +            L   ++ ++P+ID+  +        E  RE CK+    
Sbjct: 9   PEFRPLMSEIHGPAEGEEGTPVLDRSKDIDIPVIDMECLDM------EKLREACKD---- 58

Query: 90  ASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNFPAGSYRWGTPTAT 149
               WG F++ NHGI   L+ +++E    +   PF+  SK + F      SY WGTP  T
Sbjct: 59  ----WGIFRLENHGIPLTLMSQLKEISESLLSLPFE--SKRELFGVNSPLSYFWGTPALT 112

Query: 150 ----CLNQ------LSWSEAFHIPMADIS---ASAAAFTTLSS---TLEQFATTVAGLAR 193
                L++      ++W E F+IP++ +S     + +   L S    +E++   +  +A 
Sbjct: 113 PSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIAV 172

Query: 194 KLTAILAEKLG------RESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFL 247
            L   +A+ L       ++ ++  E    ST  +R+ RYP C   +   G+  HTDS  +
Sbjct: 173 TLFEAIAKTLSLELSGDQKMSYLSE----STGVIRVYRYPQCSNEAEAPGMEVHTDSSVI 228

Query: 248 TILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVV-TNPSTE 306
           +IL+QDEVGGL+++KDG+W  VKP    L+VN+GD+ Q  S+D YKSV HRV   N   E
Sbjct: 229 SILNQDEVGGLEVMKDGEWFNVKPIANTLVVNLGDMMQVISDDEYKSVLHRVGKRNKKKE 288

Query: 307 RFSIAYFFCPSYDTVIQNSEPSNYRKFSFREFRLQVQEDVQKYGHKVGLPRFLIS 361
           R+SI YF  P  D VI++   S Y+ F++ +F  QVQ DV+  G KVGL RF  +
Sbjct: 289 RYSICYFVFPEEDCVIKS---SKYKPFTYSDFEAQVQLDVKTLGSKVGLSRFKSN 340

Length = 341
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
PLN02276361 gibberellin 20-oxidase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216357 protein SRG1 100.0
PLN02904357 oxidoreductase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.82
PLN03176120 flavanone-3-hydroxylase; Provisional 99.75
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.62
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 96.11
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.16
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 92.96
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information 
Probab=100.00  E-value=6.9e-72  Score=542.49  Aligned_cols=281  Identities=34%  Similarity=0.606  Sum_probs=246.6

Q ss_pred             CCCCceEEcCCCcCCCCCCChHHHHHHHHHHHHHhhccceEEEEcCCCCHHHHHHHHHHHHHhhCCChhhhcccccccCC
Q 018014           57 ECELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNF  136 (362)
Q Consensus        57 ~~~lPvIDls~l~~~~~~~d~~~r~~~~~~i~~A~~~~GFF~v~nHGI~~ell~~~~~~~~~fF~lP~e~K~~~~~~~~~  136 (362)
                      ..+||+|||+.+..+    ++++|.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.   ..
T Consensus        38 ~~~iPvIDls~~~~~----~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~---~~  110 (361)
T PLN02276         38 ELAVPLIDLGGFLSG----DEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQ---RK  110 (361)
T ss_pred             CCCCCeEEChhhcCC----ChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhc---cC
Confidence            468999999998765    56788899999999999999999999999999999999999999999999999862   22


Q ss_pred             CCCCccCCCCCcc-cCcCCCccccccCCCCCc-------------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018014          137 PAGSYRWGTPTAT-CLNQLSWSEAFHIPMADI-------------SASAAAFTTLSSTLEQFATTVAGLARKLTAILAEK  202 (362)
Q Consensus       137 ~~~~~~~g~~~~~-~~~~~d~~E~f~i~~~~~-------------~~~~~~~~~fr~~~e~y~~~~~~la~~Ll~~la~~  202 (362)
                      +....||+..... .....||+|.|.++..+.             .|++ ..++||+.+++|+++|.+|+.+|+++||++
T Consensus       111 ~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~fr~~~~~y~~~~~~l~~~ll~~la~~  189 (361)
T PLN02276        111 PGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGE-DFEQFGKVYQEYCEAMKTLSLKIMELLGIS  189 (361)
T ss_pred             CCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233455443222 223578999998864211             1222 256899999999999999999999999999


Q ss_pred             cCCCchhhhhccCCCcceeEeeccCCCCCCCCCCcccCcccCCcEEEEeeCCCCceEEEeCCeEEEecCCCCcEEEeccc
Q 018014          203 LGRESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGD  282 (362)
Q Consensus       203 Lgl~~~~f~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~qd~~~GLqv~~~g~W~~V~p~pg~lvVnvGd  282 (362)
                      ||+++++|.+.+..+.+.||++|||+|+.++..+|+++|||+|+||||+||+++||||+++|+|++|+|.||++||||||
T Consensus       190 Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~Wi~V~p~pgalVVNiGD  269 (361)
T PLN02276        190 LGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGGLQVFVDNKWRSVRPRPGALVVNIGD  269 (361)
T ss_pred             cCCCHHHHHHHhcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCceEEEECCEEEEcCCCCCeEEEEcHH
Confidence            99999999999888889999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCcccCcccccccCCCCceEEEEEeeCCCCCceecC-------CCCCCcccccHHHHHHHHHHH
Q 018014          283 LFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQN-------SEPSNYRKFSFREFRLQVQED  345 (362)
Q Consensus       283 ~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~I~~-------~~p~~y~~~t~~ey~~~~~~~  345 (362)
                      +||+||||+||||+|||+.++..+|||||||++|+.|++|.|       .+|++|+++|++||++.....
T Consensus       270 ~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~~~ey~~~~~~~  339 (361)
T PLN02276        270 TFMALSNGRYKSCLHRAVVNSERERRSLAFFLCPKEDKVVRPPQELVDREGPRKYPDFTWSDLLEFTQKH  339 (361)
T ss_pred             HHHHHhCCccccccceeecCCCCCEEEEEEEecCCCCCEEeCChHhcCCCCCCcCCCCCHHHHHHHHHHh
Confidence            999999999999999999988899999999999999999998       478999999999998776653

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
1w9y_A319 The Structure Of Acc Oxidase Length = 319 6e-34
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-28
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 7e-28
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 4e-27
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 3e-15
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 2e-11
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 2e-11
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 4e-07
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 129/270 (47%), Gaps = 21/270 (7%)
Query: 60  LPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKV 119
            P+I L +       V+  ER    E I  A + WGFF++ NHGI +++ + + +     
Sbjct: 4   FPIISLDK-------VNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGH 56
Query: 120 FKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLNQLSWSEAF---HIPMADIXXXXXXXXX 176
           +K     K  E +F    A     G      +    W   F   H+P+++I         
Sbjct: 57  YK-----KCXEQRFKELVASKALEGVQAE--VTDXDWESTFFLKHLPISNISEVPDLDEE 109
Query: 177 XXXXXEQFATTVAGLARKLTAILAEKLGRESTFFQENCLPSTC---YLRMNRYPPCPVPS 233
                  FA  +  LA +L  +L E LG E  + +     S       +++ YPPCP P 
Sbjct: 110 YREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPD 169
Query: 234 AIHGLMPHTDSDFLTILHQDE-VGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVY 292
            I GL  HTD+  + +L QD+ V GLQL+KDG+WI V P   +++VN+GD  +  +N  Y
Sbjct: 170 LIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKY 229
Query: 293 KSVEHRVVTNPSTERFSIAYFFCPSYDTVI 322
           KSV HRV+      R S+A F+ P  D VI
Sbjct: 230 KSVXHRVIAQKDGARXSLASFYNPGSDAVI 259
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-101
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 9e-98
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-84
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-76
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 5e-75
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 7e-73
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  299 bits (769), Expect = e-101
 Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 31/297 (10%)

Query: 59  ELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVK 118
             P+I L ++       +  ER    E I  A + WGFF++ NHGI +++++ + +    
Sbjct: 3   NFPIISLDKV-------NGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKG 55

Query: 119 VFKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLNQLSWSEAFHI---PMADISASAAAFT 175
            +K+       E +F    A     G      +  + W   F +   P+++IS       
Sbjct: 56  HYKKCM-----EQRFKELVASKALEGVQAE--VTDMDWESTFFLKHLPISNISEVPDLDE 108

Query: 176 TLSSTLEQFATTVAGLARKLTAILAEKLGRESTFFQENCLPS---TCYLRMNRYPPCPVP 232
                +  FA  +  LA +L  +L E LG E  + +     S       +++ YPPCP P
Sbjct: 109 EYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKP 168

Query: 233 SAIHGLMPHTDSDFLTILHQD-EVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDV 291
             I GL  HTD+  + +L QD +V GLQL+KDG+WI V P   +++VN+GD  +  +N  
Sbjct: 169 DLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGK 228

Query: 292 YKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQ----------NSEPSNYRKFSFREF 338
           YKSV HRV+      R S+A F+ P  D VI                 Y KF F ++
Sbjct: 229 YKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 96.13
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.4
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.61
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 91.44
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 90.96
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-71  Score=539.41  Aligned_cols=279  Identities=30%  Similarity=0.474  Sum_probs=248.9

Q ss_pred             CCCceEEcCCCcCCCCCCChHHHHHHHHHHHHHhhccceEEEEcCCCCHHHHHHHHHHHHHhhCCChhhhcccccccCCC
Q 018014           58 CELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNFP  137 (362)
Q Consensus        58 ~~lPvIDls~l~~~~~~~d~~~r~~~~~~i~~A~~~~GFF~v~nHGI~~ell~~~~~~~~~fF~lP~e~K~~~~~~~~~~  137 (362)
                      .+||||||+.+.++    ++++|.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.   ...
T Consensus        45 ~~iPvIDls~l~~~----~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~---~~~  117 (356)
T 1gp6_A           45 PQVPTIDLKNIESD----DEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYA---NDQ  117 (356)
T ss_dssp             CCCCEEECTTTTCS----CHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGB---CBG
T ss_pred             CCCCEEEchhccCC----ChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhc---ccc
Confidence            47999999999765    57789999999999999999999999999999999999999999999999999872   221


Q ss_pred             --CCCccCCCCCcc-cCcCCCccccccCCCC------CccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCch
Q 018014          138 --AGSYRWGTPTAT-CLNQLSWSEAFHIPMA------DISASAAAFTTLSSTLEQFATTVAGLARKLTAILAEKLGREST  208 (362)
Q Consensus       138 --~~~~~~g~~~~~-~~~~~d~~E~f~i~~~------~~~~~~~~~~~fr~~~e~y~~~~~~la~~Ll~~la~~Lgl~~~  208 (362)
                        .+..||+..... ..+..||+|.|.++..      ...||.. +++||+++++|+++|.+|+.+|+++||++||++++
T Consensus       118 ~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~-~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~  196 (356)
T 1gp6_A          118 ATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT-PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPD  196 (356)
T ss_dssp             GGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS-STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             cccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence              234456544322 2356899999988642      2346554 78999999999999999999999999999999999


Q ss_pred             hhhhccC---CCcceeEeeccCCCCCCCCCCcccCcccCCcEEEEeeCCCCceEEEeCCeEEEecCCCCcEEEeccchhh
Q 018014          209 FFQENCL---PSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQ  285 (362)
Q Consensus       209 ~f~~~~~---~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~qd~~~GLqv~~~g~W~~V~p~pg~lvVnvGd~l~  285 (362)
                      +|.+.+.   ...+.||++|||||+.++...|+++|||+|+||||+||+++||||+++|+|++|+|.||++||||||+||
T Consensus       197 ~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~  276 (356)
T 1gp6_A          197 RLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLE  276 (356)
T ss_dssp             HHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHH
T ss_pred             HHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHH
Confidence            9999887   4678899999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCcccCcccccccCCCCceEEEEEeeCCCCCc-eecC-------CCCCCcccccHHHHHHHHHH
Q 018014          286 AWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDT-VIQN-------SEPSNYRKFSFREFRLQVQE  344 (362)
Q Consensus       286 ~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~-~I~~-------~~p~~y~~~t~~ey~~~~~~  344 (362)
                      +||||+||||+|||+.+++.+|||+|||++|+.|+ +|+|       .+|++|+++|++||++.++.
T Consensus       277 ~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~  343 (356)
T 1gp6_A          277 ILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLF  343 (356)
T ss_dssp             HHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHH
T ss_pred             HhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhcCCCCCccCCCccHHHHHHHHHH
Confidence            99999999999999999889999999999999999 9998       37899999999999988664
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 362
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-56
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 8e-55
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 5e-50
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-44
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  185 bits (470), Expect = 2e-56
 Identities = 81/299 (27%), Positives = 129/299 (43%), Gaps = 20/299 (6%)

Query: 59  ELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVK 118
           ++P IDL  I  +D    E  RE C EE+ +AS  WG   + NHGI  DL+E++++   +
Sbjct: 45  QVPTIDLKNIESDD----EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEE 100

Query: 119 VFKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLNQLSWSE-----AFHIPMADISASAAA 173
            F    ++K K                       QL W +     A+     D+S     
Sbjct: 101 FFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT 160

Query: 174 FTTLSSTLEQFATTVAGLARKLTAILAEKLGRESTFFQE---NCLPSTCYLRMNRYPPCP 230
            +       ++A  +  LA K+   L+  LG E    ++           +++N YP CP
Sbjct: 161 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCP 220

Query: 231 VPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSND 290
            P    G+  HTD   LT +  + V GLQL  +GKW+  K  P++++++IGD  +  SN 
Sbjct: 221 QPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNG 280

Query: 291 VYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQN--------SEPSNYRKFSFREFRLQ 341
            YKS+ HR + N    R S A F  P  D ++            P+ +   +F +    
Sbjct: 281 KYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 339
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 90.58
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 81.94
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.5e-68  Score=512.46  Aligned_cols=284  Identities=29%  Similarity=0.477  Sum_probs=242.4

Q ss_pred             cCCCCCCceEEcCCCcCCCCCCChHHHHHHHHHHHHHhhccceEEEEcCCCCHHHHHHHHHHHHHhhCCChhhhcccccc
Q 018014           54 LVEECELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKF  133 (362)
Q Consensus        54 ~~~~~~lPvIDls~l~~~~~~~d~~~r~~~~~~i~~A~~~~GFF~v~nHGI~~ell~~~~~~~~~fF~lP~e~K~~~~~~  133 (362)
                      .....+||||||+.+.++    |++.|++++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++. .
T Consensus        40 ~~~~~~IPvIDls~l~~~----d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~-~  114 (349)
T d1gp6a_          40 KEDGPQVPTIDLKNIESD----DEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYA-N  114 (349)
T ss_dssp             CCCSCCCCEEECTTTTCS----CHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGB-C
T ss_pred             cCCCCCcCeEEChhcCCC----CHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhh-c
Confidence            445678999999999877    78899999999999999999999999999999999999999999999999999972 1


Q ss_pred             cCCCCCCcc-CCCCCc-ccCcCCCccccccCC------CCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018014          134 MNFPAGSYR-WGTPTA-TCLNQLSWSEAFHIP------MADISASAAAFTTLSSTLEQFATTVAGLARKLTAILAEKLGR  205 (362)
Q Consensus       134 ~~~~~~~~~-~g~~~~-~~~~~~d~~E~f~i~------~~~~~~~~~~~~~fr~~~e~y~~~~~~la~~Ll~~la~~Lgl  205 (362)
                       ....+.++ ++.... ......+|.+.+...      .....|+.. .+.|++.+++|+++|.+|+.+|++++|++||+
T Consensus       115 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~-~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl  192 (349)
T d1gp6a_         115 -DQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT-PSDYIEATSEYAKCLRLLATKVFKALSVGLGL  192 (349)
T ss_dssp             -BGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS-STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             -ccccCCccccccccccccccccchhhhhcccccccccccccccccc-cchHHHHHHHHHHHHHHHHHhhhHHHHHHcCC
Confidence             11222333 222222 223345555543221      112234433 78999999999999999999999999999999


Q ss_pred             CchhhhhccC---CCcceeEeeccCCCCCCCCCCcccCcccCCcEEEEeeCCCCceEEEeCCeEEEecCCCCcEEEeccc
Q 018014          206 ESTFFQENCL---PSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGD  282 (362)
Q Consensus       206 ~~~~f~~~~~---~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~qd~~~GLqv~~~g~W~~V~p~pg~lvVnvGd  282 (362)
                      ++++|.+.+.   ...+.||++||||++......|+++|||+|+||||+||.++||||+++|+|++|+|.+|++|||+||
T Consensus       193 ~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD  272 (349)
T d1gp6a_         193 EPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGD  272 (349)
T ss_dssp             CTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECH
T ss_pred             CHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEeccCCcceeeecCCceEEccCCCCCeeeeHHh
Confidence            9999988774   3567899999999998888899999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCcccCcccccccCCCCceEEEEEeeCCCCCcee-cC-------CCCCCcccccHHHHHHHHHH
Q 018014          283 LFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVI-QN-------SEPSNYRKFSFREFRLQVQE  344 (362)
Q Consensus       283 ~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~I-~~-------~~p~~y~~~t~~ey~~~~~~  344 (362)
                      +||+||||+||||+|||+.+++.+||||+||++|+.|++| +|       .+|++|++||++||++++..
T Consensus       273 ~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~~~p~~y~~~t~~e~~~~rl~  342 (349)
T d1gp6a_         273 TLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLF  342 (349)
T ss_dssp             HHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHH
T ss_pred             HHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCCCCCCCCCCccHHHHHHHHHh
Confidence            9999999999999999999998999999999999999865 76       58899999999999988764
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure