Citrus Sinensis ID: 018016


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MDEKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMKKSKSKPEF
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccEEEccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccEEEEEEEccEEEEEcccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
mdekrsncekvEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQKAQCLiydgdasaflpskaQGAFVKMFIGpinvrasrkDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWiwdgclpafpVQLYQAWLLFLYTGLALRENIlringsdirpwwIYHHYCAMLMALVSLTWeikgqpncaqkQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGkakrmdvvwgetagvdgqlWLLCPILFILQGFEAYVGLLLLKTALvgvvpewqVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKmkkskskpef
mdekrsncekveeeeVERVVEEAKELQEAAATlinrtsseeqslRQRALSLDSNIRRLRSLLhssisstnnlLRFDSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPinvrasrkdvqLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIalgkakrmDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMtksrfkakmkkskskpef
MDEKRSNCekveeeevervveeakeLQEAAATLINRTSSEEQSLRQRALSLDsnirrlrsllhssisstnnllRFDSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTAllfllfpstllilRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTksrfkakmkkskskPEF
***********************************************************************LLRFDSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMT*****************
*************EEVERVVEEAKELQEAA************************************************************************LPSKAQGAFVKMFIGPINVRASRKD**LKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLM******************
**********************AKELQEAAATLINR***********ALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKS***************
****RSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKM*********
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MDEKRSNCxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMKKSKSKPEF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
Q54IK2368 Transmembrane protein 120 yes no 0.574 0.565 0.337 1e-23
A6QPF8339 Transmembrane protein 120 yes no 0.842 0.899 0.263 3e-23
A0PK00339 Transmembrane protein 120 yes no 0.859 0.917 0.252 3e-23
Q3TA38339 Transmembrane protein 120 yes no 0.911 0.973 0.255 5e-23
A3KNK1341 Transmembrane protein 120 no no 0.825 0.876 0.264 3e-21
Q1LY80337 Transmembrane protein 120 no no 0.867 0.931 0.256 5e-20
Q9U1M2387 Transmembrane protein 120 yes no 0.712 0.666 0.277 1e-19
Q5FWV6336 Transmembrane protein 120 yes no 0.856 0.922 0.267 3e-19
A1L2R7336 Transmembrane protein 120 N/A no 0.850 0.916 0.266 9e-19
Q8C1E7343 Transmembrane protein 120 no no 0.665 0.702 0.268 1e-17
>sp|Q54IK2|TM120_DICDI Transmembrane protein 120 homolog OS=Dictyostelium discoideum GN=tmem120 PE=3 SV=1 Back     alignment and function desciption
 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 122/243 (50%), Gaps = 35/243 (14%)

Query: 101 AFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRT-------ALLFLLFPST 153
           +F P      FV++F+G +NV+  R++ + ++K+EY  ++ +T        +L LL+P +
Sbjct: 119 SFTPETG-SIFVRLFLGQVNVKHMRENEKFRLKQEYEKFKKKTNPQFILFVVLLLLYPQS 177

Query: 154 LLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLM 213
             +  SW              Q WLL+ Y  LALRENIL +NGS I+PWWI HHY ++  
Sbjct: 178 SFVTTSW--------------QIWLLYYYITLALRENILLVNGSSIKPWWIMHHYLSIAG 223

Query: 214 ALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMD 273
           +L +L + +    +    Q  V  F   +  QG+  +L NRYQ+ RLY  +A+GKA  +D
Sbjct: 224 SLTNLLFPLSESFSYFLPQ--VTYF---SGCQGLVQILTNRYQQGRLYKLVAMGKANIID 278

Query: 274 VV-----WGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTAL--VGVVPEWQVSFCGA 326
           V      WG   G       L P L  +Q F+ Y        A    G V EWQV  CG 
Sbjct: 279 VTGESEGWGNDPGWTPSALFLFPFLLFVQFFQLYNSFSFFAFAYQRSGYV-EWQVFSCGF 337

Query: 327 LLV 329
           + +
Sbjct: 338 IFL 340





Dictyostelium discoideum (taxid: 44689)
>sp|A6QPF8|T120B_BOVIN Transmembrane protein 120B OS=Bos taurus GN=TMEM120B PE=2 SV=1 Back     alignment and function description
>sp|A0PK00|T120B_HUMAN Transmembrane protein 120B OS=Homo sapiens GN=TMEM120B PE=2 SV=1 Back     alignment and function description
>sp|Q3TA38|T120B_MOUSE Transmembrane protein 120B OS=Mus musculus GN=Tmem120b PE=2 SV=1 Back     alignment and function description
>sp|A3KNK1|T120A_DANRE Transmembrane protein 120A OS=Danio rerio GN=tmem120a PE=2 SV=1 Back     alignment and function description
>sp|Q1LY80|T120B_DANRE Transmembrane protein 120B OS=Danio rerio GN=tmem120b PE=2 SV=1 Back     alignment and function description
>sp|Q9U1M2|TM120_DROME Transmembrane protein 120 homolog OS=Drosophila melanogaster GN=CG32795 PE=1 SV=1 Back     alignment and function description
>sp|Q5FWV6|T120A_XENTR Transmembrane protein 120A OS=Xenopus tropicalis GN=tmem120a PE=2 SV=2 Back     alignment and function description
>sp|A1L2R7|T120A_XENLA Transmembrane protein 120A OS=Xenopus laevis GN=tmem120a PE=2 SV=1 Back     alignment and function description
>sp|Q8C1E7|T120A_MOUSE Transmembrane protein 120A OS=Mus musculus GN=Tmem120a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
297742494361 unnamed protein product [Vitis vinifera] 0.955 0.958 0.845 1e-173
359473999371 PREDICTED: transmembrane protein 120 hom 0.936 0.913 0.848 1e-170
449456299365 PREDICTED: transmembrane protein 120 hom 0.955 0.947 0.84 1e-164
359806628354 uncharacterized protein LOC100789483 [Gl 0.961 0.983 0.787 1e-164
356576897354 PREDICTED: transmembrane protein 120 hom 0.939 0.960 0.799 1e-162
255646863354 unknown [Glycine max] 0.939 0.960 0.796 1e-162
255555863360 conserved hypothetical protein [Ricinus 0.930 0.936 0.850 1e-160
224117700363 predicted protein [Populus trichocarpa] 0.908 0.906 0.815 1e-158
224056717345 predicted protein [Populus trichocarpa] 0.917 0.962 0.811 1e-157
18413335347 TMPIT-like protein [Arabidopsis thaliana 0.947 0.988 0.76 1e-151
>gi|297742494|emb|CBI34643.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/350 (84%), Positives = 320/350 (91%), Gaps = 4/350 (1%)

Query: 13  EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNL 72
           +E+V  VVE+AKELQ+AA++ I+RTS EEQ+LR+ ALSLDSNI RLRSL+ S     N +
Sbjct: 15  DEQVSGVVEQAKELQDAASSHISRTSVEEQALRKSALSLDSNIHRLRSLIDSL--HRNKI 72

Query: 73  LRFDSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKV 132
           L  D KLADKL+EDLQ+A+C++ DGDAS+FLP  AQG F++MF+GPINV A+RKDVQLKV
Sbjct: 73  L--DPKLADKLDEDLQRARCILVDGDASSFLPGNAQGGFLRMFLGPINVHATRKDVQLKV 130

Query: 133 KEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENIL 192
           KEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLP FPVQLYQAWLLFLYTGLALRENIL
Sbjct: 131 KEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPTFPVQLYQAWLLFLYTGLALRENIL 190

Query: 193 RINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ 252
           R+NGSDIRPWWIYHHYCAM+MALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ
Sbjct: 191 RVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ 250

Query: 253 NRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTAL 312
           NRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTA 
Sbjct: 251 NRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTAF 310

Query: 313 VGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMKKSKSKPEF 362
           VGVV EWQV FCG LLVLMAVGNF NTVQTLM KSRFKAKMK+SKSK E 
Sbjct: 311 VGVVSEWQVVFCGVLLVLMAVGNFANTVQTLMVKSRFKAKMKRSKSKQEL 360




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473999|ref|XP_002276903.2| PREDICTED: transmembrane protein 120 homolog isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449456299|ref|XP_004145887.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] gi|449524416|ref|XP_004169219.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|359806628|ref|NP_001241531.1| uncharacterized protein LOC100789483 [Glycine max] gi|255639685|gb|ACU20136.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356576897|ref|XP_003556566.1| PREDICTED: transmembrane protein 120 homolog [Glycine max] Back     alignment and taxonomy information
>gi|255646863|gb|ACU23902.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255555863|ref|XP_002518967.1| conserved hypothetical protein [Ricinus communis] gi|223541954|gb|EEF43500.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224117700|ref|XP_002317646.1| predicted protein [Populus trichocarpa] gi|222860711|gb|EEE98258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056717|ref|XP_002298988.1| predicted protein [Populus trichocarpa] gi|222846246|gb|EEE83793.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18413335|ref|NP_567356.1| TMPIT-like protein [Arabidopsis thaliana] gi|42572865|ref|NP_974529.1| TMPIT-like protein [Arabidopsis thaliana] gi|16648995|gb|AAL24349.1| putative protein [Arabidopsis thaliana] gi|20259956|gb|AAM13325.1| putative protein [Arabidopsis thaliana] gi|332657481|gb|AEE82881.1| TMPIT-like protein [Arabidopsis thaliana] gi|332657482|gb|AEE82882.1| TMPIT-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
TAIR|locus:2127701347 AT4G10430 "AT4G10430" [Arabido 0.861 0.899 0.705 1.8e-119
TAIR|locus:2196668347 AT1G33230 "AT1G33230" [Arabido 0.861 0.899 0.692 3.8e-117
DICTYBASE|DDB_G0288699368 tmem120 "TMPIT-like family pro 0.624 0.614 0.323 1.2e-28
RGD|1311474343 Tmem120a "transmembrane protei 0.685 0.723 0.308 2e-24
UNIPROTKB|F1P7N5408 F1P7N5 "Uncharacterized protei 0.685 0.607 0.308 2.6e-24
UNIPROTKB|Q9BXJ8343 TMEM120A "Transmembrane protei 0.685 0.723 0.308 2.6e-24
MGI|MGI:2686991343 Tmem120a "transmembrane protei 0.685 0.723 0.308 2.6e-24
UNIPROTKB|Q05B45343 TMEM120A "Transmembrane protei 0.685 0.723 0.308 4.2e-24
ZFIN|ZDB-GENE-070424-21341 tmem120a "transmembrane protei 0.690 0.733 0.278 2.6e-22
ZFIN|ZDB-GENE-041010-17337 zgc:103681 "zgc:103681" [Danio 0.627 0.673 0.302 5.5e-22
TAIR|locus:2127701 AT4G10430 "AT4G10430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
 Identities = 225/319 (70%), Positives = 252/319 (78%)

Query:    26 LQEAAATLINRTSSEEQSLRQRALSLDXXXXXXXXXXXXXXXXXXXXXRFDSKLADKLEE 85
             L ++AA+ I+ +S +E SLRQ+A ++D                       D KL +KLEE
Sbjct:    17 LHDSAASFISSSSQQELSLRQKASAVDSSIRRLHSTIVSNK-------NLDPKLVEKLEE 69

Query:    86 DLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTAX 145
             DL +A+C++ DG+ S+FLPSK QG FV+MF GP+NVRA RKDVQLKVKEEYN YRD+TA 
Sbjct:    70 DLHRARCMLVDGETSSFLPSKPQGRFVRMFCGPVNVRALRKDVQLKVKEEYNRYRDKTAL 129

Query:   146 XXXXXXXXXXXXRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIY 205
                         RS+ W GCLPAFPVQLY+AWLLFLY GLA+RENILR NGSDIRPWW+Y
Sbjct:   130 LFLFFPATLLILRSYYWGGCLPAFPVQLYEAWLLFLYAGLAMRENILRANGSDIRPWWLY 189

Query:   206 HHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIA 265
             HHYCAM MALVSLTWEIKGQPNC QKQRGV LFLQWAMMQGVAMLLQNRYQRQRLYTRIA
Sbjct:   190 HHYCAMAMALVSLTWEIKGQPNCVQKQRGVHLFLQWAMMQGVAMLLQNRYQRQRLYTRIA 249

Query:   266 LGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCG 325
             LGKAKRMDVVWGETAGVDGQLWLLCPILFILQ FEAYVGLLLL+  + GVV EWQV  CG
Sbjct:   250 LGKAKRMDVVWGETAGVDGQLWLLCPILFILQVFEAYVGLLLLRKTVTGVVNEWQVMVCG 309

Query:   326 ALLVLMAVGNFINTVQTLM 344
              LLV+MAVGNFINTV+TLM
Sbjct:   310 ILLVVMAVGNFINTVETLM 328




GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016021 "integral to membrane" evidence=IEA
TAIR|locus:2196668 AT1G33230 "AT1G33230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288699 tmem120 "TMPIT-like family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1311474 Tmem120a "transmembrane protein 120A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7N5 F1P7N5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BXJ8 TMEM120A "Transmembrane protein 120A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2686991 Tmem120a "transmembrane protein 120A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q05B45 TMEM120A "Transmembrane protein 120A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070424-21 tmem120a "transmembrane protein 120A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-17 zgc:103681 "zgc:103681" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
pfam07851330 pfam07851, TMPIT, TMPIT-like protein 1e-112
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein Back     alignment and domain information
 Score =  330 bits (847), Expect = e-112
 Identities = 105/343 (30%), Positives = 171/343 (49%), Gaps = 16/343 (4%)

Query: 13  EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNL 72
           EEE + + +E ++LQE       +    E+   Q   ++    +RL+ L+ S      +L
Sbjct: 3   EEEWKELEKEFQQLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIVSLKKLKKSL 62

Query: 73  LRFDSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKV 132
              DS+L ++LEE +++ +   +D ++  FLP K  G ++++ +G +NV    K  +   
Sbjct: 63  TPEDSELVEQLEEQIKERKNQFFDMES--FLPKK-NGLYLRLVLGNVNVTLLSKQAKFAY 119

Query: 133 KEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENIL 192
           K+EY  ++    ++ LL   T L L ++            L+   L++ Y  L +RE+IL
Sbjct: 120 KDEYEKFKLYLTVILLLLAFTCLFLLNY-------RVLDALFNFLLVWYYCTLTIRESIL 172

Query: 193 RINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ 252
            +NGS I+ WW++HHY +  ++ V LTW     P+    Q     FL ++M Q +   LQ
Sbjct: 173 IVNGSRIKGWWVFHHYISTALSGVMLTW-----PDGEMYQLFRNQFLYFSMYQSLVQFLQ 227

Query: 253 NRYQRQRLYTRIALGKAKRMDVVW-GETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTA 311
           N YQ   LY   ALG+   MD+   G  + +   L  L P LF  Q F+ Y    L + A
Sbjct: 228 NYYQSGCLYRLRALGERHNMDLTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAWTLFRLA 287

Query: 312 LVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMK 354
                 EWQV  CG L +++ +GNF  T+  +  K R +AKMK
Sbjct: 288 RHPECKEWQVFVCGLLFLVLFLGNFFTTLMVVYQKFRNQAKMK 330


A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. Length = 330

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
PF07851330 TMPIT: TMPIT-like protein; InterPro: IPR012926 A n 100.0
KOG4758220 consensus Predicted membrane protein [General func 100.0
KOG4758220 consensus Predicted membrane protein [General func 99.6
PF07851330 TMPIT: TMPIT-like protein; InterPro: IPR012926 A n 94.11
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this Back     alignment and domain information
Probab=100.00  E-value=6.8e-127  Score=928.41  Aligned_cols=312  Identities=35%  Similarity=0.615  Sum_probs=295.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhhhhccccccccccccCHHHHHHHHHHHHH
Q 018016           10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQK   89 (362)
Q Consensus        10 ~~~~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~   89 (362)
                      ++...+-.+|+||+.++|+.|+++|+||+       +|+++++++|++|+++++.          ++++.+++++++|++
T Consensus        17 qethr~Y~qKleel~~lQ~~C~ssI~~Qk-------krLk~L~~sLk~~~~~~~~----------e~~~~i~~L~~~Ik~   79 (330)
T PF07851_consen   17 QETHRSYKQKLEELSKLQDKCSSSISHQK-------KRLKELKKSLKRCKKSLSA----------EERELIEKLEEDIKE   79 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCCCh----------hHHHHHHHHHHHHHH
Confidence            34445678899999999999999999997       5999999999999854331          278999999999999


Q ss_pred             HhcccccchhhhcCCCCCCCccceeecccceeeeccccccccchhhhhhhHHHHHHHHHHHHHHHHHH-HHHhhcCCCCC
Q 018016           90 AQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLIL-RSWIWDGCLPA  168 (362)
Q Consensus        90 ~~~~~~~~dme~~LP~k~nG~yL~liLG~vNVtll~k~~kf~yKdEYEkFKl~~t~i~ll~~~~ll~~-~~~~~d~~~~~  168 (362)
                      |+++++  |||++||+| ||+||+++||||||+++++++||+|||||||||+++|++++++|++|+++ ++++.|     
T Consensus        80 r~~~l~--DmEa~LPkk-NGlyL~liLGnVNVsll~k~~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r~~d-----  151 (330)
T PF07851_consen   80 RRCQLF--DMEAFLPKK-NGLYLRLILGNVNVSLLSKQAKFKYKDEYEKFKLYLTIILLLFAVALLFLLNYRVLD-----  151 (330)
T ss_pred             HHhhHH--HHHhhCCCC-CCcccceecccccceecccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcChHHHH-----
Confidence            999999  999999975 99999999999999999999999999999999999999999999988875 455555     


Q ss_pred             chHHHHHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHhhhhhhcccccCCCcchhhhhhhhHHHHHHHHHHHH
Q 018016          169 FPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVA  248 (362)
Q Consensus       169 ~~~~~~~flLvwyYcTLtiREsIL~vNGSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~f~~qFl~fs~yqs~V  248 (362)
                         ++|+|||||||||||||||||+||||||||||+.|||+||++|||||||     |||..||+||+||+.||+|||+|
T Consensus       152 ---~~~~f~lvwyY~tLtiRE~IL~~NGS~Ik~WW~~HHy~s~~~s~v~Ltw-----p~~~~~~~fr~~fl~f~~~~~~v  223 (330)
T PF07851_consen  152 ---QLFNFLLVWYYCTLTIRESILIVNGSRIKGWWVFHHYISTFLSGVMLTW-----PDGEAYQKFRPQFLLFSLYQSVV  223 (330)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHhccccC-----CCcHHHHHHHHHHHHHHHHHHHH
Confidence               5999999999999999999999999999999999999999999999999     79999999999999999999999


Q ss_pred             HHHHHHhhhhhhHHHHHhCCCCccccc-ccCCcccccchHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHH
Q 018016          249 MLLQNRYQRQRLYTRIALGKAKRMDVV-WGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGAL  327 (362)
Q Consensus       249 Q~lQ~~YQrgcLYrl~ALGe~~~MDvt-~g~~~~v~ggLtfLlPfLf~g~~fQlYna~tL~~~s~~~~~~EWQV~~~~ll  327 (362)
                      |+||||||||||||||||||||+|||| +|++|||.||||||+||||+||+||+||||+||+++++|+|+||||+|||++
T Consensus       224 q~lQ~~YQ~~~Ly~l~AlG~~~~mdvt~eG~~s~~~~~L~fLlPfLf~~~~~q~yn~~~l~~~~~~~~~~ewqv~~~~~~  303 (330)
T PF07851_consen  224 QFLQYRYQRGCLYRLRALGKRHNMDVTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAYTLFELSYHPECREWQVFVCGLL  303 (330)
T ss_pred             HHHHHHHHHhHHHHHHHhccCccceeeecccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHH
Confidence            999999999999999999999999999 7999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 018016          328 LVLMAVGNFINTVQTLMTKSRFKAKMK  354 (362)
Q Consensus       328 flil~~GNf~TTl~vv~~K~~~~~~~~  354 (362)
                      |++||+|||+||++|+++|+|+++|||
T Consensus       304 f~~l~~gN~~tt~~v~~~K~~~~~~~~  330 (330)
T PF07851_consen  304 FLILFLGNFFTTLKVVHQKLKKKAKMK  330 (330)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhccC
Confidence            999999999999999999999999986



; GO: 0016021 integral to membrane

>KOG4758 consensus Predicted membrane protein [General function prediction only] Back     alignment and domain information
>KOG4758 consensus Predicted membrane protein [General function prediction only] Back     alignment and domain information
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.4 bits (135), Expect = 8e-09
 Identities = 59/380 (15%), Positives = 117/380 (30%), Gaps = 110/380 (28%)

Query: 8   CEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSIS 67
             K +EE V++ VEE   L+     L++   +E+   RQ ++     I + R  L++   
Sbjct: 72  LSK-QEEMVQKFVEEV--LRINYKFLMSPIKTEQ---RQPSMMTRMYIEQ-RDRLYNDNQ 124

Query: 68  --STNNLLRFD--SKLADKLEEDLQKAQCLIYDGD---------ASAFLPSKAQGAFV-K 113
             +  N+ R     KL   L E L+ A+ ++ DG              L  K Q     K
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 114 MF---IGPIN------------------VRASRKDVQLKVKEEYNSYRDRTALLFLL--F 150
           +F   +   N                     SR D    +K   +S +     L     +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 151 PSTLLILR----SWIWDGCLPAFPVQ--------------------LYQAWLLFLYTGLA 186
            + LL+L     +  W+    AF +                          L      L 
Sbjct: 244 ENCLLVLLNVQNAKAWN----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 187 LRE------NILRINGSDIRPWWIYHH--YCAMLMALVS---LTWEIKGQPNCAQKQRGV 235
             E        L     D+    +  +    +++   +     TW+     NC +    +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 236 QLFLQWAMMQGVAMLLQNRYQRQRLYTRIALG------KAKRMDVVWGETAGVDGQLWLL 289
           +  L           +    + ++++ R+++           + ++W +    D  +   
Sbjct: 360 ESSLN----------VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV--- 406

Query: 290 CPILFILQGFEAYVGLLLLK 309
                ++     Y   L+ K
Sbjct: 407 -----VVNKLHKY--SLVEK 419


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00