Citrus Sinensis ID: 018016
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| 297742494 | 361 | unnamed protein product [Vitis vinifera] | 0.955 | 0.958 | 0.845 | 1e-173 | |
| 359473999 | 371 | PREDICTED: transmembrane protein 120 hom | 0.936 | 0.913 | 0.848 | 1e-170 | |
| 449456299 | 365 | PREDICTED: transmembrane protein 120 hom | 0.955 | 0.947 | 0.84 | 1e-164 | |
| 359806628 | 354 | uncharacterized protein LOC100789483 [Gl | 0.961 | 0.983 | 0.787 | 1e-164 | |
| 356576897 | 354 | PREDICTED: transmembrane protein 120 hom | 0.939 | 0.960 | 0.799 | 1e-162 | |
| 255646863 | 354 | unknown [Glycine max] | 0.939 | 0.960 | 0.796 | 1e-162 | |
| 255555863 | 360 | conserved hypothetical protein [Ricinus | 0.930 | 0.936 | 0.850 | 1e-160 | |
| 224117700 | 363 | predicted protein [Populus trichocarpa] | 0.908 | 0.906 | 0.815 | 1e-158 | |
| 224056717 | 345 | predicted protein [Populus trichocarpa] | 0.917 | 0.962 | 0.811 | 1e-157 | |
| 18413335 | 347 | TMPIT-like protein [Arabidopsis thaliana | 0.947 | 0.988 | 0.76 | 1e-151 |
| >gi|297742494|emb|CBI34643.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust.
Identities = 296/350 (84%), Positives = 320/350 (91%), Gaps = 4/350 (1%)
Query: 13 EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNL 72
+E+V VVE+AKELQ+AA++ I+RTS EEQ+LR+ ALSLDSNI RLRSL+ S N +
Sbjct: 15 DEQVSGVVEQAKELQDAASSHISRTSVEEQALRKSALSLDSNIHRLRSLIDSL--HRNKI 72
Query: 73 LRFDSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKV 132
L D KLADKL+EDLQ+A+C++ DGDAS+FLP AQG F++MF+GPINV A+RKDVQLKV
Sbjct: 73 L--DPKLADKLDEDLQRARCILVDGDASSFLPGNAQGGFLRMFLGPINVHATRKDVQLKV 130
Query: 133 KEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENIL 192
KEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLP FPVQLYQAWLLFLYTGLALRENIL
Sbjct: 131 KEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPTFPVQLYQAWLLFLYTGLALRENIL 190
Query: 193 RINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ 252
R+NGSDIRPWWIYHHYCAM+MALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ
Sbjct: 191 RVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ 250
Query: 253 NRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTAL 312
NRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTA
Sbjct: 251 NRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTAF 310
Query: 313 VGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMKKSKSKPEF 362
VGVV EWQV FCG LLVLMAVGNF NTVQTLM KSRFKAKMK+SKSK E
Sbjct: 311 VGVVSEWQVVFCGVLLVLMAVGNFANTVQTLMVKSRFKAKMKRSKSKQEL 360
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473999|ref|XP_002276903.2| PREDICTED: transmembrane protein 120 homolog isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449456299|ref|XP_004145887.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] gi|449524416|ref|XP_004169219.1| PREDICTED: transmembrane protein 120 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|359806628|ref|NP_001241531.1| uncharacterized protein LOC100789483 [Glycine max] gi|255639685|gb|ACU20136.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356576897|ref|XP_003556566.1| PREDICTED: transmembrane protein 120 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255646863|gb|ACU23902.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255555863|ref|XP_002518967.1| conserved hypothetical protein [Ricinus communis] gi|223541954|gb|EEF43500.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224117700|ref|XP_002317646.1| predicted protein [Populus trichocarpa] gi|222860711|gb|EEE98258.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224056717|ref|XP_002298988.1| predicted protein [Populus trichocarpa] gi|222846246|gb|EEE83793.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|18413335|ref|NP_567356.1| TMPIT-like protein [Arabidopsis thaliana] gi|42572865|ref|NP_974529.1| TMPIT-like protein [Arabidopsis thaliana] gi|16648995|gb|AAL24349.1| putative protein [Arabidopsis thaliana] gi|20259956|gb|AAM13325.1| putative protein [Arabidopsis thaliana] gi|332657481|gb|AEE82881.1| TMPIT-like protein [Arabidopsis thaliana] gi|332657482|gb|AEE82882.1| TMPIT-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| TAIR|locus:2127701 | 347 | AT4G10430 "AT4G10430" [Arabido | 0.861 | 0.899 | 0.705 | 1.8e-119 | |
| TAIR|locus:2196668 | 347 | AT1G33230 "AT1G33230" [Arabido | 0.861 | 0.899 | 0.692 | 3.8e-117 | |
| DICTYBASE|DDB_G0288699 | 368 | tmem120 "TMPIT-like family pro | 0.624 | 0.614 | 0.323 | 1.2e-28 | |
| RGD|1311474 | 343 | Tmem120a "transmembrane protei | 0.685 | 0.723 | 0.308 | 2e-24 | |
| UNIPROTKB|F1P7N5 | 408 | F1P7N5 "Uncharacterized protei | 0.685 | 0.607 | 0.308 | 2.6e-24 | |
| UNIPROTKB|Q9BXJ8 | 343 | TMEM120A "Transmembrane protei | 0.685 | 0.723 | 0.308 | 2.6e-24 | |
| MGI|MGI:2686991 | 343 | Tmem120a "transmembrane protei | 0.685 | 0.723 | 0.308 | 2.6e-24 | |
| UNIPROTKB|Q05B45 | 343 | TMEM120A "Transmembrane protei | 0.685 | 0.723 | 0.308 | 4.2e-24 | |
| ZFIN|ZDB-GENE-070424-21 | 341 | tmem120a "transmembrane protei | 0.690 | 0.733 | 0.278 | 2.6e-22 | |
| ZFIN|ZDB-GENE-041010-17 | 337 | zgc:103681 "zgc:103681" [Danio | 0.627 | 0.673 | 0.302 | 5.5e-22 |
| TAIR|locus:2127701 AT4G10430 "AT4G10430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
Identities = 225/319 (70%), Positives = 252/319 (78%)
Query: 26 LQEAAATLINRTSSEEQSLRQRALSLDXXXXXXXXXXXXXXXXXXXXXRFDSKLADKLEE 85
L ++AA+ I+ +S +E SLRQ+A ++D D KL +KLEE
Sbjct: 17 LHDSAASFISSSSQQELSLRQKASAVDSSIRRLHSTIVSNK-------NLDPKLVEKLEE 69
Query: 86 DLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTAX 145
DL +A+C++ DG+ S+FLPSK QG FV+MF GP+NVRA RKDVQLKVKEEYN YRD+TA
Sbjct: 70 DLHRARCMLVDGETSSFLPSKPQGRFVRMFCGPVNVRALRKDVQLKVKEEYNRYRDKTAL 129
Query: 146 XXXXXXXXXXXXRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIY 205
RS+ W GCLPAFPVQLY+AWLLFLY GLA+RENILR NGSDIRPWW+Y
Sbjct: 130 LFLFFPATLLILRSYYWGGCLPAFPVQLYEAWLLFLYAGLAMRENILRANGSDIRPWWLY 189
Query: 206 HHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIA 265
HHYCAM MALVSLTWEIKGQPNC QKQRGV LFLQWAMMQGVAMLLQNRYQRQRLYTRIA
Sbjct: 190 HHYCAMAMALVSLTWEIKGQPNCVQKQRGVHLFLQWAMMQGVAMLLQNRYQRQRLYTRIA 249
Query: 266 LGKAKRMDVVWGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCG 325
LGKAKRMDVVWGETAGVDGQLWLLCPILFILQ FEAYVGLLLL+ + GVV EWQV CG
Sbjct: 250 LGKAKRMDVVWGETAGVDGQLWLLCPILFILQVFEAYVGLLLLRKTVTGVVNEWQVMVCG 309
Query: 326 ALLVLMAVGNFINTVQTLM 344
LLV+MAVGNFINTV+TLM
Sbjct: 310 ILLVVMAVGNFINTVETLM 328
|
|
| TAIR|locus:2196668 AT1G33230 "AT1G33230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0288699 tmem120 "TMPIT-like family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| RGD|1311474 Tmem120a "transmembrane protein 120A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P7N5 F1P7N5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9BXJ8 TMEM120A "Transmembrane protein 120A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2686991 Tmem120a "transmembrane protein 120A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q05B45 TMEM120A "Transmembrane protein 120A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-070424-21 tmem120a "transmembrane protein 120A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041010-17 zgc:103681 "zgc:103681" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 362 | |||
| pfam07851 | 330 | pfam07851, TMPIT, TMPIT-like protein | 1e-112 |
| >gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein | Back alignment and domain information |
|---|
Score = 330 bits (847), Expect = e-112
Identities = 105/343 (30%), Positives = 171/343 (49%), Gaps = 16/343 (4%)
Query: 13 EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNL 72
EEE + + +E ++LQE + E+ Q ++ +RL+ L+ S +L
Sbjct: 3 EEEWKELEKEFQQLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIVSLKKLKKSL 62
Query: 73 LRFDSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKV 132
DS+L ++LEE +++ + +D ++ FLP K G ++++ +G +NV K +
Sbjct: 63 TPEDSELVEQLEEQIKERKNQFFDMES--FLPKK-NGLYLRLVLGNVNVTLLSKQAKFAY 119
Query: 133 KEEYNSYRDRTALLFLLFPSTLLILRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENIL 192
K+EY ++ ++ LL T L L ++ L+ L++ Y L +RE+IL
Sbjct: 120 KDEYEKFKLYLTVILLLLAFTCLFLLNY-------RVLDALFNFLLVWYYCTLTIRESIL 172
Query: 193 RINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ 252
+NGS I+ WW++HHY + ++ V LTW P+ Q FL ++M Q + LQ
Sbjct: 173 IVNGSRIKGWWVFHHYISTALSGVMLTW-----PDGEMYQLFRNQFLYFSMYQSLVQFLQ 227
Query: 253 NRYQRQRLYTRIALGKAKRMDVVW-GETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTA 311
N YQ LY ALG+ MD+ G + + L L P LF Q F+ Y L + A
Sbjct: 228 NYYQSGCLYRLRALGERHNMDLTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAWTLFRLA 287
Query: 312 LVGVVPEWQVSFCGALLVLMAVGNFINTVQTLMTKSRFKAKMK 354
EWQV CG L +++ +GNF T+ + K R +AKMK
Sbjct: 288 RHPECKEWQVFVCGLLFLVLFLGNFFTTLMVVYQKFRNQAKMK 330
|
A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. Length = 330 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| PF07851 | 330 | TMPIT: TMPIT-like protein; InterPro: IPR012926 A n | 100.0 | |
| KOG4758 | 220 | consensus Predicted membrane protein [General func | 100.0 | |
| KOG4758 | 220 | consensus Predicted membrane protein [General func | 99.6 | |
| PF07851 | 330 | TMPIT: TMPIT-like protein; InterPro: IPR012926 A n | 94.11 |
| >PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-127 Score=928.41 Aligned_cols=312 Identities=35% Similarity=0.615 Sum_probs=295.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhhhhccccccccccccCHHHHHHHHHHHHH
Q 018016 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQK 89 (362)
Q Consensus 10 ~~~~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 89 (362)
++...+-.+|+||+.++|+.|+++|+||+ +|+++++++|++|+++++. ++++.+++++++|++
T Consensus 17 qethr~Y~qKleel~~lQ~~C~ssI~~Qk-------krLk~L~~sLk~~~~~~~~----------e~~~~i~~L~~~Ik~ 79 (330)
T PF07851_consen 17 QETHRSYKQKLEELSKLQDKCSSSISHQK-------KRLKELKKSLKRCKKSLSA----------EERELIEKLEEDIKE 79 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCCCh----------hHHHHHHHHHHHHHH
Confidence 34445678899999999999999999997 5999999999999854331 278999999999999
Q ss_pred HhcccccchhhhcCCCCCCCccceeecccceeeeccccccccchhhhhhhHHHHHHHHHHHHHHHHHH-HHHhhcCCCCC
Q 018016 90 AQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTALLFLLFPSTLLIL-RSWIWDGCLPA 168 (362)
Q Consensus 90 ~~~~~~~~dme~~LP~k~nG~yL~liLG~vNVtll~k~~kf~yKdEYEkFKl~~t~i~ll~~~~ll~~-~~~~~d~~~~~ 168 (362)
|+++++ |||++||+| ||+||+++||||||+++++++||+|||||||||+++|++++++|++|+++ ++++.|
T Consensus 80 r~~~l~--DmEa~LPkk-NGlyL~liLGnVNVsll~k~~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r~~d----- 151 (330)
T PF07851_consen 80 RRCQLF--DMEAFLPKK-NGLYLRLILGNVNVSLLSKQAKFKYKDEYEKFKLYLTIILLLFAVALLFLLNYRVLD----- 151 (330)
T ss_pred HHhhHH--HHHhhCCCC-CCcccceecccccceecccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcChHHHH-----
Confidence 999999 999999975 99999999999999999999999999999999999999999999988875 455555
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHhhhhhhcccccCCCcchhhhhhhhHHHHHHHHHHHH
Q 018016 169 FPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVA 248 (362)
Q Consensus 169 ~~~~~~~flLvwyYcTLtiREsIL~vNGSrIkgWWv~HHY~S~~lsgv~LtWp~~~~p~~~~~~~f~~qFl~fs~yqs~V 248 (362)
++|+|||||||||||||||||+||||||||||+.|||+||++||||||| |||..||+||+||+.||+|||+|
T Consensus 152 ---~~~~f~lvwyY~tLtiRE~IL~~NGS~Ik~WW~~HHy~s~~~s~v~Ltw-----p~~~~~~~fr~~fl~f~~~~~~v 223 (330)
T PF07851_consen 152 ---QLFNFLLVWYYCTLTIRESILIVNGSRIKGWWVFHHYISTFLSGVMLTW-----PDGEAYQKFRPQFLLFSLYQSVV 223 (330)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHhccccC-----CCcHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHhCCCCccccc-ccCCcccccchHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHH
Q 018016 249 MLLQNRYQRQRLYTRIALGKAKRMDVV-WGETAGVDGQLWLLCPILFILQGFEAYVGLLLLKTALVGVVPEWQVSFCGAL 327 (362)
Q Consensus 249 Q~lQ~~YQrgcLYrl~ALGe~~~MDvt-~g~~~~v~ggLtfLlPfLf~g~~fQlYna~tL~~~s~~~~~~EWQV~~~~ll 327 (362)
|+||||||||||||||||||||+|||| +|++|||.||||||+||||+||+||+||||+||+++++|+|+||||+|||++
T Consensus 224 q~lQ~~YQ~~~Ly~l~AlG~~~~mdvt~eG~~s~~~~~L~fLlPfLf~~~~~q~yn~~~l~~~~~~~~~~ewqv~~~~~~ 303 (330)
T PF07851_consen 224 QFLQYRYQRGCLYRLRALGKRHNMDVTVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAYTLFELSYHPECREWQVFVCGLL 303 (330)
T ss_pred HHHHHHHHHhHHHHHHHhccCccceeeecccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHH
Confidence 999999999999999999999999999 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 018016 328 LVLMAVGNFINTVQTLMTKSRFKAKMK 354 (362)
Q Consensus 328 flil~~GNf~TTl~vv~~K~~~~~~~~ 354 (362)
|++||+|||+||++|+++|+|+++|||
T Consensus 304 f~~l~~gN~~tt~~v~~~K~~~~~~~~ 330 (330)
T PF07851_consen 304 FLILFLGNFFTTLKVVHQKLKKKAKMK 330 (330)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999986
|
; GO: 0016021 integral to membrane |
| >KOG4758 consensus Predicted membrane protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4758 consensus Predicted membrane protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 362 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-09 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 8e-09
Identities = 59/380 (15%), Positives = 117/380 (30%), Gaps = 110/380 (28%)
Query: 8 CEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSIS 67
K +EE V++ VEE L+ L++ +E+ RQ ++ I + R L++
Sbjct: 72 LSK-QEEMVQKFVEEV--LRINYKFLMSPIKTEQ---RQPSMMTRMYIEQ-RDRLYNDNQ 124
Query: 68 --STNNLLRFD--SKLADKLEEDLQKAQCLIYDGD---------ASAFLPSKAQGAFV-K 113
+ N+ R KL L E L+ A+ ++ DG L K Q K
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 114 MF---IGPIN------------------VRASRKDVQLKVKEEYNSYRDRTALLFLL--F 150
+F + N SR D +K +S + L +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 151 PSTLLILR----SWIWDGCLPAFPVQ--------------------LYQAWLLFLYTGLA 186
+ LL+L + W+ AF + L L
Sbjct: 244 ENCLLVLLNVQNAKAWN----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 187 LRE------NILRINGSDIRPWWIYHH--YCAMLMALVS---LTWEIKGQPNCAQKQRGV 235
E L D+ + + +++ + TW+ NC + +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 236 QLFLQWAMMQGVAMLLQNRYQRQRLYTRIALG------KAKRMDVVWGETAGVDGQLWLL 289
+ L + + ++++ R+++ + ++W + D +
Sbjct: 360 ESSLN----------VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV--- 406
Query: 290 CPILFILQGFEAYVGLLLLK 309
++ Y L+ K
Sbjct: 407 -----VVNKLHKY--SLVEK 419
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00