Citrus Sinensis ID: 018019

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTQLA
Secondary Structure (PSIPRED)
ccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHccccccccEEEEEEEccccccHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccccccccEEEEcccccEEEEEEccccccccHHHHHHHHHcccEEEEEcccEEEEEEEEcHHHHHHHHccccccccccccHHHHHHHcccccccEEccccccccccccccHHHHHHHHHHccccccccccccccccccccccEEEEEEEEccccEEEEEEccccccEEEccEEEccccEEEcccEEEEccEEccccEEccccEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHccccccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEccEEccccHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccHccEEEEcccccEEEEEEcccccccccEEEEEEEEccccEEEEcccEccEEEEEcHHHHHHcccccccccccHHHHHHHHHHcccEEEEEEcccccccccHHccccHHHHHHHHcccccHHccccccccccccccccccccEEEEccccEEcccEEEcccEEEcccEEEccccEEEcccEEEcccEEcccEEEcccccccc
Coil and Loop (DISEMBL)
MDFQVVVLaggtskklvplvskevpkallpvanrpVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVatvpedvgtAGALRAIAHHLTAKDVLVvsgdlvsdvppgavtaahRRHDAVVTAMICSvpvsglseagssgakdktkkpgryniigmdptKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKseilingapqgqqakengndkvSYRIlanastpsfhelyalgpngsapvrrthKCCVYIASNSKYCVRLNSIQAFMDINRDVIGeanhlsgynfsaqnniihpsaelgskttqla
Flexible Loop (DISEMBL)
mdfqvvvlaggtskklvplvskevpkallpvanRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVsglseagssgakdktkkpgryniigmdptKQFLLHIATgaelekdtriRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILingapqgqqakengNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNniihpsaelgskttqla
Low Complexity Region (SEG)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKdvlvvsgdlvsdvPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTQLA
Disordered region (IsUnstruct)
***QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVP*********************YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILIN****************SYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNII**************
Disordered Region (DISOPRED)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV****************KPGRYNIIGMDPTKQFLLHIATGA*****TRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTQL*
Disordered Region (DISEMBL)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSG*************KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAEL********
Disordered Region (DISPRO)
*DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS*************TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTQLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
Q54FQ8	440	Translation initiation fa	yes	no	0.930	0.765	0.260	1e-28
P70541	452	Translation initiation fa	yes	no	0.928	0.743	0.291	2e-28
Q4R6T3	452	Translation initiation fa	N/A	no	0.928	0.743	0.3	7e-27
A5PJI7	452	Translation initiation fa	yes	no	0.928	0.743	0.296	2e-26
Q9NR50	452	Translation initiation fa	no	no	0.947	0.758	0.275	2e-25
P56288	458	Probable translation init	yes	no	0.662	0.524	0.291	2e-21
P80361	404	Probable translation init	yes	no	0.646	0.579	0.245	1e-09
P56287	678	Probable translation init	no	no	0.632	0.337	0.216	4e-08
Q5B1J4	364	Mannose-1-phosphate guany	yes	no	0.566	0.563	0.239	1e-07
Q4I1Y5	364	Mannose-1-phosphate guany	yes	no	0.555	0.552	0.224	2e-07

>sp|Q54FQ8|EI2BG_DICDI Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 183/365 (50%), Gaps = 28/365 (7%)

Query: 3   FQVVVLA---GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIK---DLIVVV 56
           FQVV+LA      + KL P +   +P +LLP+ANRP++SY LE LE +  +   + +++V
Sbjct: 6   FQVVILATDKASGNSKLEP-IDATIPHSLLPIANRPLISYQLEFLEKAGFETKSEPVIIV 64

Query: 57  EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV-S 115
               +  ++  ++S  Y  ++ VE   + + + T   L  I   +  +  +V++ +LV  
Sbjct: 65  VNETSQEKIKQYVSEIYKGKIEVEFFVLKDQLATCEILYRIRDKIRLEYFMVLNANLVLE 124

Query: 116 DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY-NIIGMDPTKQF 174
           D     +   HR+ ++ +T ++   P   + + G    +  TK+   + + I ++   Q 
Sbjct: 125 DTFIRQMADLHRKEESSLTVLL-KPPTPKVEQKGKGATETSTKQDKLFTDYIALEEKSQK 183

Query: 175 LLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL-DQKDK---F 230
           ++ +    E+E+D    KS+L+    + I  +L D  +Y F+R VL  ++ DQK+K   F
Sbjct: 184 IVMMEPATEVEEDLNFNKSLLKYFPNVTIYTNLQDTQLYIFSRWVLDLIIEDQKEKYPLF 243

Query: 231 QSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP--SFHELYAL 288
             +K+ ++PYL+  Q+ +       P    +  N N  +S + +++ ++P   F EL   
Sbjct: 244 FDIKKHLIPYLLSCQIPNIKRKRALP---ASAFNQNQTLS-QTMSSTTSPFDQFSEL--- 296

Query: 289 GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSGYNFSAQNNI 347
               +A   +T KC  ++     YC+ +N+I+ +  INRD+  G+  +L     S +N  
Sbjct: 297 ----NAQKNKTIKCFAHLLKKEGYCMNVNTIKNYQQINRDIAKGDLQYLPNEPKSEKNFF 352

Query: 348 IHPSA 352
           I P+A
Sbjct: 353 IDPTA 357

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Dictyostelium discoideum (taxid: 44689)

>sp|P70541|EI2BG_RAT Translation initiation factor eIF-2B subunit gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 180/370 (48%), Gaps = 34/370 (9%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVV----- 54

Query: 61  AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
               V   + A +  +L  ++  +P+  D+GTA +LR I   L   DVLV+  DL++DV 
Sbjct: 55  TTKDVQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKT-DVLVLGCDLITDVA 113

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
              V    R +DA +  ++        S     G K K K   + + IG+D T + LL +
Sbjct: 114 LHEVVDLFRAYDASLAMLMRK---GQESTEPVPGQKGKKKTVEQRDFIGVDSTGKRLLFM 170

Query: 179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
           A  A+L+++  I+ SIL+   ++  +  L+DAH+Y   + V+  +++ K    S++ +++
Sbjct: 171 ANEADLDEELVIKGSILQKHPRIHFQTGLVDAHLYCLKKYVVDFLMENK-SITSIRSELI 229

Query: 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA--PV 296
           PYLVR Q  S      + Q Q+ KE    K   + L   S         L P  +     
Sbjct: 230 PYLVRKQFSSA----SSQQRQEDKEEDLKKKEPKSLDIYSFIKKDNTLTLAPYDACWNAF 285

Query: 297 RRTH---------KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
           RR           +C V+I      C R++++  +M+ NR V    + L       + ++
Sbjct: 286 RRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSVL-----CPEESM 339

Query: 348 IHPSAELGSK 357
           IHPSA++ +K
Sbjct: 340 IHPSAQIANK 349

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Rattus norvegicus (taxid: 10116)

>sp|Q4R6T3|EI2BG_MACFA Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1

 Score =  121 bits (304), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 180/370 (48%), Gaps = 34/370 (9%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLP  N+P++ Y L  LE    +++IVV     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPAGNKPLIWYPLNLLERVGFEEVIVV----- 54

Query: 61  AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
               V   + A +  ++  ++  +P+D  +GTA +LR +   L   DVLV+S DL++DV 
Sbjct: 55  TTRDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKT-DVLVLSCDLITDVA 113

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
              V    R +DA + AM+       L      G K K K   + + IG+D T + LL +
Sbjct: 114 LHEVVDLFRAYDASL-AMLMRKGQDSLEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query: 179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
           A  A+L+++  I+ SIL+   ++    DL+DAH+Y   + V+ + L +     S++ +++
Sbjct: 171 ANEADLDEELVIKGSILQKYPRIRFHTDLVDAHLYCLKKYVV-DFLMENGSITSIRSELI 229

Query: 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
           PYLVR Q  S      + QGQ+ KE    K        Y  L  A+T +     A     
Sbjct: 230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFLKEANTLNLAPYDACWNAC 285

Query: 289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
            G       R   +C V+I      C R++++  +M+ NR V      LS      +  +
Sbjct: 286 RGDRWEDLPRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSA--LCPEEPL 339

Query: 348 IHPSAELGSK 357
           +H SA++ SK
Sbjct: 340 VHSSAQIVSK 349

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Macaca fascicularis (taxid: 9541)

>sp|A5PJI7|EI2BG_BOVIN Translation initiation factor eIF-2B subunit gamma OS=Bos taurus GN=EIF2B3 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 185/371 (49%), Gaps = 35/371 (9%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IV+     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTS-SIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVI----- 54

Query: 61  AALRVGGWISAAYVD-RLHVEVATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDV 117
               V   + A +   ++ +++  +P+  D+GTA +LR I   L   DVLV+S DL++DV
Sbjct: 55  TTKDVQKALCADFNKMKMKLDIVCIPDEADMGTADSLRHIYQKLKT-DVLVLSCDLITDV 113

Query: 118 PPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLH 177
               V    R HDA + AM+       L      G K K K   + + +G+D T + LL 
Sbjct: 114 ALHEVVDLFRAHDASL-AMLMRKGQESLEPV--PGQKGKKKAVEQRDFVGVDSTGKRLLF 170

Query: 178 IATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDV 237
           +A  A+L+++  I+ SIL+   ++     L+DAH+Y   + V+  +++ K    S++ ++
Sbjct: 171 MANEADLDEELIIKGSILQKHPRIRFHTGLVDAHLYCLKKYVVDFLMENK-SITSIRSEL 229

Query: 238 LPYLVRSQLKSEILINGAPQGQQAKENGN--------DKVSYRILANASTPSFHELY--- 286
           +PYLVR Q  S      + QGQ+ KE           D  S+   AN  T + ++     
Sbjct: 230 IPYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLTLAPYDTCWNA 285

Query: 287 ALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNN 346
             G +     R   +C V+I      C R++++  +M+ NR V   +  L       + +
Sbjct: 286 CRGDSWEGLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---SKLLP--VICPEES 339

Query: 347 IIHPSAELGSK 357
           +IH SA++ SK
Sbjct: 340 LIHSSAQIVSK 350

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Bos taurus (taxid: 9913)

>sp|Q9NR50|EI2BG_HUMAN Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 183/385 (47%), Gaps = 42/385 (10%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV     
Sbjct: 1   MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVV----- 54

Query: 61  AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
               V   + A +  ++  ++  +P+D  +GTA +LR I   L   DVLV+S DL++DV 
Sbjct: 55  TTRDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKT-DVLVLSCDLITDVA 113

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
              V    R +DA + AM+       +      G K K K   + + IG+D T + LL +
Sbjct: 114 LHEVVDLFRAYDASL-AMLMRKGQDSIEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query: 179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
           A  A+L+++  I+ SIL+   ++     L+DAH+Y   + ++ + L +     S++ +++
Sbjct: 171 ANEADLDEELVIKGSILQKHPRIRFHTGLVDAHLYCLKKYIV-DFLMENGSITSIRSELI 229

Query: 239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
           PYLVR Q  S      + QGQ+ KE    K        Y  +  A+T +     A     
Sbjct: 230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNAC 285

Query: 289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-------------IGEAN 334
            G       R   +C V+I      C R++++  +M+ NR V             +  + 
Sbjct: 286 RGDRWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSA 344

Query: 335 HLSGYNFSAQNNIIHPSAELGSKTT 359
            +   +    +++I P  ++G K++
Sbjct: 345 QIVSKHLVGVDSLIGPETQIGEKSS 369

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Homo sapiens (taxid: 9606)

>sp|P56288|EI2BG_SCHPO Probable translation initiation factor eIF-2B subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif223 PE=1 SV=2

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 132/257 (51%), Gaps = 17/257 (6%)

Query: 1   MDFQVVVLAGGTSKKLVPLV-SKEVPKALLPVANRPVLSYVLEQLELSNIKD-LIVVVEG 58
           ++FQ VV AG     L PL  S  +PKALLP+ N+P+L Y L  LE +     +++ +E 
Sbjct: 37  IEFQAVVFAG-FGNSLYPLTGSDALPKALLPIGNKPMLHYPLYWLEAAGFTSAILICMEE 95

Query: 59  ADAALRVGGWISAAYVD--RLHVEVATVPEDV-GTAGALRAIAHHLTAKDVLVVSGDLVS 115
           A+A   +  W+ + Y    R+HVE  T+ +D   +A ALRA++ HL   D + +S D + 
Sbjct: 96  AEA--HINAWLRSGYEGHMRIHVEAPTILDDSKSSADALRAVS-HLIKNDFVCLSCDSIV 152

Query: 116 DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFL 175
            +PP       R  +   +A+    PV       S   +   K+     +IG++     L
Sbjct: 153 GLPPIYGLDKFRLDNP--SALAVYSPVLKYEHITSQSKEIDAKQ-----LIGIEEKTSRL 205

Query: 176 LHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ 235
           L+  + A++  D   R S+L    ++ +  +L DAH++ F   V+ +++ +K+   S++ 
Sbjct: 206 LYAKSSADVGSDFTFRMSLLWKHPRVTLNTNLSDAHIFVFKHWVI-DLIREKESISSIRG 264

Query: 236 DVLPYLVRSQLKSEILI 252
           D++PYLV+ Q +    +
Sbjct: 265 DLIPYLVKCQYQKSFTV 281

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P80361|EI2BG_CAEEL Probable translation initiation factor eIF-2B subunit gamma OS=Caenorhabditis elegans GN=ppp-1 PE=2 SV=3

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 14/248 (5%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           +++ +GG ++  +P++++ V K LLPV   P+  Y L  L  + I D+ + V        
Sbjct: 7   ILLCSGGGTR--MPVLTRHVQKCLLPVVGVPMFLYPLSSLLRTGITDIKIFVREVLQLTL 64

Query: 65  VGGWISAAYVDRL--HVEVATV-PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGA 121
                 +  +++   H+E   V  ED GTA  L+   H    KD L+VS D +SD     
Sbjct: 65  EKEVKKSKLLEKYPAHIEYICVNQEDFGTADLLKN-HHSKITKDALIVSCDFISDASLIP 123

Query: 122 VTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATG 181
           +    R  ++ + A+I    V+    A + G+  K+KKP   +++ +  +   L  +   
Sbjct: 124 LVDFFRATNSTLVALIADTCVN----APAPGS--KSKKPKATDVMAIVESTGQLAFLCGD 177

Query: 182 AELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYL 241
            + +    + KS L+    + + +   D H+YA    VL   L +     S K D +P L
Sbjct: 178 DDFDAPLVMEKS-LKIFPSIKLTSKYNDCHVYAIRHKVLLN-LSKSKHISSFKADFVPLL 235

Query: 242 VRSQLKSE 249
           +  Q + +
Sbjct: 236 IDKQFEPD 243

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Caenorhabditis elegans (taxid: 6239)

>sp|P56287|EI2BE_SCHPO Probable translation initiation factor eIF-2B subunit epsilon OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif225 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 110/254 (43%), Gaps = 25/254 (9%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
            Q +VL+   + +  PL + + P+ LLP+AN P++ Y  E L L+ ++++ V        
Sbjct: 18  LQAIVLSDSYNYRFRPL-TLDKPRCLLPLANTPLIEYTFEFLALAGVQEVYVFCCAHAGQ 76

Query: 63  LRVGGWISAAYVDRLHVEVATVPEDVGT---------AGALRAI-AHHLTAKDVLVVSGD 112
           +R        Y+++    + + P  V T           ALR + +  L   D ++VSGD
Sbjct: 77  IR-------EYIEKSKWNLPSSPFSVNTIVSRESLSVGDALRELDSKQLITSDFILVSGD 129

Query: 113 LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTK 172
           +VS+VP   V   HR+        I ++ V   S    + A+ ++      ++  +D   
Sbjct: 130 VVSNVPLNEVLKEHRKRREDDKNAIMTMVVREASPFHRTRARTES------SVFVIDKKT 183

Query: 173 QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQS 232
              +H       +    +   I     ++++R DL+D  +   +  V     +  D +Q 
Sbjct: 184 SQCVHYQANERGKHYVSMDPEIFNEHEELEVRNDLIDCQIDICSNDVPALFTENFD-YQD 242

Query: 233 LKQDVLPYLVRSQL 246
           +++D +  ++ S L
Sbjct: 243 IRKDFVYGVLTSDL 256

Subunit of the guanine nucleotide exchange factor for eIF-2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5B1J4|MPG1_EMENI Mannose-1-phosphate guanyltransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mpg1 PE=3 SV=2

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 111/251 (44%), Gaps = 46/251 (18%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVE-GADA 61
            + ++L GG   +L PL +  +PK L+   NRP++ + +E L  + + D+++ V    D 
Sbjct: 1   MKALILVGGFGTRLRPL-TLTLPKPLVEFGNRPMILHQVESLAAAGVTDIVLAVNYRPDV 59

Query: 62  ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD---VLVVSGDLVSDVP 118
            +         Y  ++   V T P  +GTAG L+ +A  + AKD     V++ D++ D P
Sbjct: 60  MVSALKKYEEQYNVKIEFSVETEP--LGTAGPLK-LAESILAKDDSPFFVLNSDVICDYP 116

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
              +   H+RH    T ++                  K  +P +Y ++   P        
Sbjct: 117 FQQLAEFHKRHGDEGTIVVT-----------------KVDEPSKYGVVVHKPNHP----- 154

Query: 179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
                    +RI + + + V   +   + ++A MY  N SVL+ +   + +  S++Q+  
Sbjct: 155 ---------SRIDRFVEKPV---EFVGNRINAGMYILNPSVLKRI---ELRPTSIEQETF 199

Query: 239 PYLVR-SQLKS 248
           P +VR  QL S
Sbjct: 200 PAIVRDGQLHS 210

Involved in cell wall synthesis where it is required for glycosylation. Involved in cell cycle progression through cell-size checkpoint.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q4I1Y5|MPG1_GIBZE Mannose-1-phosphate guanyltransferase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=MPG1 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 115/249 (46%), Gaps = 48/249 (19%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           ++L GG   +L PL +  VPK L+  AN+P++ + +E L  + + D+++ V      +  
Sbjct: 4   LILVGGYGTRLRPL-TLSVPKPLVEFANKPMIVHQIEALVAAGVTDIVLAVNYRPEVMEK 62

Query: 66  GGWISAAYVDR--LHVEVATVPEDVGTAGALRAIAHHLTAKD---VLVVSGDLVSDVPPG 120
                A Y ++  +++E +   E + TAG L+ +A  + AKD     V++ D++ D P  
Sbjct: 63  ---FLAEYEEKFGINIEFSVETEPLDTAGPLK-LAERILAKDDSPFFVLNSDVICDFPFE 118

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
            + A H+ H    T ++                  K ++P +Y ++   P  + L+    
Sbjct: 119 DLLAFHKSHGNEGTIVVT-----------------KVEEPSKYGVVVHQPGHRSLI---- 157

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
                 D  + K +       +   + ++A +Y FN S+L  +   + +  S++++  P 
Sbjct: 158 ------DRFVEKPV-------EFVGNRINAGLYIFNTSILDRI---ELRPTSIEKETFPA 201

Query: 241 LVR-SQLKS 248
           +V+ +QL S
Sbjct: 202 MVKDNQLHS 210

Involved in cell wall synthesis where it is required for glycosylation. Involved in cell cycle progression through cell-size checkpoint.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
224103999	458	predicted protein [Populus trichocarpa]	0.980	0.775	0.787	1e-167
296082668	461	unnamed protein product [Vitis vinifera]	0.983	0.772	0.817	1e-166
359494464	463	PREDICTED: translation initiation factor	0.983	0.768	0.817	1e-166
356525249	459	PREDICTED: translation initiation factor	0.983	0.775	0.768	1e-161
356512489	468	PREDICTED: translation initiation factor	0.988	0.764	0.754	1e-158
224059672	508	predicted protein [Populus trichocarpa]	0.980	0.698	0.695	1e-157
357518837	565	Translation initiation factor eIF-2B sub	0.983	0.630	0.743	1e-155
449452670	461	PREDICTED: translation initiation factor	0.983	0.772	0.746	1e-152
79328173	456	translation initiation factor eIF-2B gam	0.980	0.778	0.698	1e-139
297812131	456	acyltransferase [Arabidopsis lyrata subs	0.980	0.778	0.698	1e-138

>gi|224103999|ref|XP_002313277.1| predicted protein [Populus trichocarpa] gi|222849685|gb|EEE87232.1| predicted protein [Populus trichocarpa]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 289/367 (78%), Positives = 324/367 (88%), Gaps = 12/367 (3%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGT KKL+PLVSK+VPKALLPVANRPVLSYVLEQLELSN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGTCKKLLPLVSKDVPKALLPVANRPVLSYVLEQLELSNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL VGGWIS AYVDRLHVEVA VPEDVGTAGALRAIAHHLTA D+LVVSGDLVSD+PPG
Sbjct: 61  AALHVGGWISNAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVSDIPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           A+ A HR+HDAVVT M+CS PVSG +E+GSSG KDK KKP R+NIIG+DP+KQFLLHIAT
Sbjct: 121 ALAAVHRQHDAVVTTMLCSAPVSGPTESGSSGGKDKIKKPRRHNIIGLDPSKQFLLHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EK+ RI+KSILRAV QM+IRADLMDAHMYAF RSVLQEVLD+KDKF+SLK+D+LPY
Sbjct: 181 GAEVEKEIRIQKSILRAVDQMEIRADLMDAHMYAFKRSVLQEVLDEKDKFRSLKEDMLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQ+KSE+L+NGAPQ +    NGN+KVS         RIL NASTPSFH+LYA   N 
Sbjct: 241 LVRSQMKSEVLLNGAPQAK----NGNEKVSSQNNQAVVSRILTNASTPSFHDLYASSNND 296

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S+ VRR HKCC YIAS S+YC RLNSIQAF DINRDVIG+A+HLSGY+FS+ NNIIHPSA
Sbjct: 297 SSLVRRIHKCCAYIASESRYCQRLNSIQAFSDINRDVIGDASHLSGYSFSSHNNIIHPSA 356

Query: 353 ELGSKTT 359
           +LGS+TT
Sbjct: 357 QLGSRTT 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082668|emb|CBI21673.3| unnamed protein product [Vitis vinifera]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 300/367 (81%), Positives = 324/367 (88%), Gaps = 11/367 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLE LE SN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLELLEHSNLKDLIVVVEGQD 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AALRVGGWIS AYVDRLHVEVA VPEDVGTAGALRAIAHHLTA D+LVVSGDLV DV PG
Sbjct: 61  AALRVGGWISGAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVCDVSPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV AAHRRH A VTAM+CSVPVSG  E+GSS  KDKTKKPG  NIIG+DPTKQFLL+IAT
Sbjct: 121 AVAAAHRRHGAAVTAMLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           G E+E+D R++KSILRAVGQM+IRADLMDAH+YAF R+VLQEVLDQKD FQSL+QDVLPY
Sbjct: 181 GPEIERDIRVQKSILRAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQL+SE+ +NGAP     +ENG+DKV          ++LA  STPSFHELYA+GPNG
Sbjct: 241 LVRSQLRSELSLNGAP---HTEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           SAPVRRTHKCCVYIAS  KYC RLNSIQAF DINRDVIGEA+HLSGY+FSAQNNIIHPSA
Sbjct: 298 SAPVRRTHKCCVYIASQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSA 357

Query: 353 ELGSKTT 359
           ELGSKTT
Sbjct: 358 ELGSKTT 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494464|ref|XP_002266884.2| PREDICTED: translation initiation factor eIF-2B subunit gamma [Vitis vinifera]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 300/367 (81%), Positives = 324/367 (88%), Gaps = 11/367 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLE LE SN+KDLIVVVEG D
Sbjct: 3   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLELLEHSNLKDLIVVVEGQD 62

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AALRVGGWIS AYVDRLHVEVA VPEDVGTAGALRAIAHHLTA D+LVVSGDLV DV PG
Sbjct: 63  AALRVGGWISGAYVDRLHVEVAAVPEDVGTAGALRAIAHHLTANDILVVSGDLVCDVSPG 122

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV AAHRRH A VTAM+CSVPVSG  E+GSS  KDKTKKPG  NIIG+DPTKQFLL+IAT
Sbjct: 123 AVAAAHRRHGAAVTAMLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIAT 182

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           G E+E+D R++KSILRAVGQM+IRADLMDAH+YAF R+VLQEVLDQKD FQSL+QDVLPY
Sbjct: 183 GPEIERDIRVQKSILRAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPY 242

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQL+SE+ +NGAP     +ENG+DKV          ++LA  STPSFHELYA+GPNG
Sbjct: 243 LVRSQLRSELSLNGAP---HTEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNG 299

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           SAPVRRTHKCCVYIAS  KYC RLNSIQAF DINRDVIGEA+HLSGY+FSAQNNIIHPSA
Sbjct: 300 SAPVRRTHKCCVYIASQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSA 359

Query: 353 ELGSKTT 359
           ELGSKTT
Sbjct: 360 ELGSKTT 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525249|ref|XP_003531239.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Glycine max]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 282/367 (76%), Positives = 314/367 (85%), Gaps = 11/367 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVL GG SKKL+PLVS+E+P ALLPVANRPVLSYVLE LELSN+KDLIVVVEG +
Sbjct: 1   MDFQVVVLGGGLSKKLLPLVSQELPNALLPVANRPVLSYVLEYLELSNLKDLIVVVEGEE 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           A L VG WIS AY DRLHVEVA VPEDVGTAGA+RAI+HHLTAKD+LVVSGDLV+DVP G
Sbjct: 61  AVLHVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDAVVTAM+CS PVSG SE+ SSG KDK KKPGRY++IG+DPTKQFL+HIAT
Sbjct: 121 AVAATHRRHDAVVTAMLCSAPVSGPSESVSSGGKDKIKKPGRYDLIGLDPTKQFLVHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD RI+KS+L AVGQ++IRADLMDAH+YAF RSVLQEVLDQK  F SLK DVLPY
Sbjct: 181 GAEVEKDLRIQKSMLPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQLKSE+L+NG P   QA+ENG +KV          +ILANAS P FH   ALGP+G
Sbjct: 241 LVRSQLKSEVLLNGMP---QAEENGTEKVISQSNQQMLSQILANASEPIFHLRNALGPHG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S   RRTHKCCVYIA +SKYC RLNSIQA+ DINRDV GEA+HLSGY+FSAQNNIIHPSA
Sbjct: 298 STSDRRTHKCCVYIAGSSKYCARLNSIQAYSDINRDVTGEASHLSGYSFSAQNNIIHPSA 357

Query: 353 ELGSKTT 359
           ELG+KTT
Sbjct: 358 ELGAKTT 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512489|ref|XP_003524951.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Glycine max]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 274/363 (75%), Positives = 311/363 (85%), Gaps = 5/363 (1%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVL GG SKKL+PLVS+E+P ALLP+ANRPVLSYVLE LELSN+KDLIVVVEG +
Sbjct: 1   MDFQVVVLGGGVSKKLIPLVSQELPNALLPLANRPVLSYVLEYLELSNLKDLIVVVEGEE 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL VG WIS AY DRLHVEVA VPEDVGTAGA+RAI+HHLTAKD+LVVSGDLV+DVP G
Sbjct: 61  AALHVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDAVVTAM+CS PVSG  E+ SSG KDKTKKPGRY++IG+DPTKQFL+HIAT
Sbjct: 121 AVAATHRRHDAVVTAMLCSAPVSGPLESVSSGGKDKTKKPGRYDLIGLDPTKQFLVHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD RI+KS+L AVGQ++IRADLMDAH+YAF RSVLQEVLDQK  F SLK DVLPY
Sbjct: 181 GAEVEKDLRIQKSMLPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAK-----ENGNDKVSYRILANASTPSFHELYALGPNGSAP 295
           LVRSQLKSE+L+NG PQ ++ +        N ++  +ILANAS P+FH  +ALGP GS  
Sbjct: 241 LVRSQLKSEVLLNGIPQAEENRTEKVISQSNQQMLSQILANASEPTFHLRHALGPYGSTF 300

Query: 296 VRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELG 355
            RRTHKCCVYIA +SKYC RLNSIQA+ DINRDVIGEA+ LSGY+FS  NNIIHPSAELG
Sbjct: 301 DRRTHKCCVYIAGSSKYCARLNSIQAYTDINRDVIGEASRLSGYSFSTLNNIIHPSAELG 360

Query: 356 SKT 358
           +KT
Sbjct: 361 AKT 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059672|ref|XP_002299963.1| predicted protein [Populus trichocarpa] gi|222847221|gb|EEE84768.1| predicted protein [Populus trichocarpa]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/417 (69%), Positives = 324/417 (77%), Gaps = 62/417 (14%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSKKL+PLVSKEVPKALLPVANRPVLSYVLEQLELSN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGTSKKLLPLVSKEVPKALLPVANRPVLSYVLEQLELSNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVE-------------------------------------VAT 83
           AA+ VGGWIS AYVDRLHVE                                     VA 
Sbjct: 61  AAIHVGGWISNAYVDRLHVEQQNGNKHRVHICSVKSCNLGFEKLMPCKIPKCYITLQVAA 120

Query: 84  VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS 143
           V EDVGTAGALRAIAHHLTA D+LVVSGDLV DVPPGA+ AAHR+H+AVVT M+C  PVS
Sbjct: 121 VHEDVGTAGALRAIAHHLTANDILVVSGDLVFDVPPGALAAAHRKHNAVVTTMLCPAPVS 180

Query: 144 GLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDI 203
           G +E+GSSG KDK KKP RYNIIG+DP+KQFLLHIATGAE+EK+ RI+KSILRAVGQM+I
Sbjct: 181 GPTESGSSGGKDKIKKPRRYNIIGLDPSKQFLLHIATGAEVEKEIRIQKSILRAVGQMEI 240

Query: 204 RADLMDAHMYAFN-------------RSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEI 250
           RADLMDAHMYAF              RSVLQEVLD+KD+FQSLK+DVLPYLVRSQLKSE+
Sbjct: 241 RADLMDAHMYAFKRCSLSSPSLSISFRSVLQEVLDEKDEFQSLKEDVLPYLVRSQLKSEL 300

Query: 251 LINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNGSAPVRRTHKC 302
           L NG P   QA+E+GN+KV          +I+ANASTPSFHEL + G +GS  VRR HKC
Sbjct: 301 LFNGVP---QAEESGNEKVGSQNNQAVVSQIMANASTPSFHELSS-GNSGSTHVRRIHKC 356

Query: 303 CVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTT 359
           C YIAS S+YC RLNSIQAF DINRDVIG+A+HLSGY+FS+ NNIIHPSA+LGS+TT
Sbjct: 357 CAYIASESRYCQRLNSIQAFSDINRDVIGDASHLSGYSFSSHNNIIHPSAQLGSRTT 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518837|ref|XP_003629707.1| Translation initiation factor eIF-2B subunit gamma [Medicago truncatula] gi|355523729|gb|AET04183.1| Translation initiation factor eIF-2B subunit gamma [Medicago truncatula]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/367 (74%), Positives = 310/367 (84%), Gaps = 11/367 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGG SKKL+PLVS E+P ALLPVANRPVLSYV+E LELSN+KDLIVVVEG D
Sbjct: 1   MDFQVVVLAGGVSKKLLPLVSHELPNALLPVANRPVLSYVVELLELSNLKDLIVVVEGKD 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
            AL VG WIS AY DRLHVEVA VPEDVGTAGA+RAIA HL AKD+L+VSGDLVSDVP G
Sbjct: 61  TALNVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAIARHLYAKDILIVSGDLVSDVPIG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDAVVTA++C+ PVSG  E+ SSG KDK KKPGRY++IG+DPTKQFLLHIAT
Sbjct: 121 AVAATHRRHDAVVTALLCNTPVSGPLESVSSGGKDKAKKPGRYDLIGLDPTKQFLLHIAT 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD RI+KSILR+VGQ++IRADLMDAH+YAF RSVL EVLDQ  +F SLK DVLPY
Sbjct: 181 GAEVEKDLRIQKSILRSVGQVEIRADLMDAHLYAFKRSVLLEVLDQNGEFHSLKHDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQLKSE+L+NG P   QA+ENG +KV          +ILANAS P+FH  + L  NG
Sbjct: 241 LVRSQLKSEVLLNGTP---QAEENGTEKVISQSNQQMLSQILANASEPTFHLRHELSTNG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S  VRRTHKCCVYIA ++KYC RLNS+QA+ DINRDVIGEA+HLSGY+FS+ NNII P+A
Sbjct: 298 SDSVRRTHKCCVYIAGSNKYCARLNSLQAYNDINRDVIGEASHLSGYSFSSHNNIIDPTA 357

Query: 353 ELGSKTT 359
           ELG+KTT
Sbjct: 358 ELGAKTT 364

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452670|ref|XP_004144082.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Cucumis sativus] gi|449493530|ref|XP_004159334.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Cucumis sativus]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 274/367 (74%), Positives = 316/367 (86%), Gaps = 11/367 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVVVLAGGTSK LVPLVSKE+PKALLPVANRPVLSYVLE LELSN+KD+IVV EG D
Sbjct: 1   MDFQVVVLAGGTSKNLVPLVSKELPKALLPVANRPVLSYVLELLELSNLKDIIVVAEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
            ALR+G WIS AY +RL VEV +VPEDVGTAGALRAI+ HLTA D+LVVSGDLVSDVPPG
Sbjct: 61  VALRIGSWISGAYDERLRVEVTSVPEDVGTAGALRAISRHLTANDILVVSGDLVSDVPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRR+ AVVTAM+CSVPVSG SE+GS+G KDKTKK   +NI+G+DPTKQFLL+IA+
Sbjct: 121 AVAATHRRNGAVVTAMLCSVPVSGSSESGSAGGKDKTKKAVIHNIVGLDPTKQFLLYIAS 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE+EKD +I+KSILRAVGQMDIRADLMDA+MYAF RS LQ+VLDQKD F+SL+QDVLPY
Sbjct: 181 GAEIEKDYKIQKSILRAVGQMDIRADLMDAYMYAFKRSALQKVLDQKDTFRSLRQDVLPY 240

Query: 241 LVRSQLKSEILINGAPQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNG 292
           LVRSQL+SE+L+NG P   + +ENG +KV          +IL+N+S  SFH+LYA G +G
Sbjct: 241 LVRSQLRSEVLLNGTP---RTEENGLEKVGSHKIQVLLSQILSNSSATSFHDLYASGADG 297

Query: 293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSA 352
           S PVR+THKCCVYI  +S YC RL SIQ++ DINRDVIGEA+HLSGY+FSAQNNIIHPSA
Sbjct: 298 SIPVRKTHKCCVYIPPSSNYCARLFSIQSYSDINRDVIGEASHLSGYSFSAQNNIIHPSA 357

Query: 353 ELGSKTT 359
           +LGSKTT
Sbjct: 358 QLGSKTT 364

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79328173|ref|NP_001031908.1| translation initiation factor eIF-2B gamma subunit [Arabidopsis thaliana] gi|98961849|gb|ABF59254.1| unknown protein [Arabidopsis thaliana] gi|332005333|gb|AED92716.1| translation initiation factor eIF-2B gamma subunit [Arabidopsis thaliana]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/365 (69%), Positives = 301/365 (82%), Gaps = 10/365 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVV+LAGG S  LVPLV+KEVPKALLPVANRPVLSYVL+ LE SN+KDLIVVVEG D
Sbjct: 1   MDFQVVILAGGFSSYLVPLVAKEVPKALLPVANRPVLSYVLDLLESSNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL+VGGWIS+A VDRLHVEVA V E+VGTAGALRAIAHHLTAKD+L+VSGD+VSD+PPG
Sbjct: 61  AALKVGGWISSACVDRLHVEVAAVAENVGTAGALRAIAHHLTAKDILIVSGDIVSDIPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDA VT M+C+ PVSG SE+G SG KDKTKKP   +IIG+D  KQFLL+IA 
Sbjct: 121 AVAATHRRHDAAVTVMLCAQPVSGPSESGGSGGKDKTKKPACDDIIGLDSLKQFLLYIAK 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           G E++KDTR++KSIL A G+M+IR+DLMD+H+YAF R+VLQEVLDQK  F+SLKQDVLPY
Sbjct: 181 GTEIKKDTRVKKSILCAAGKMEIRSDLMDSHIYAFKRAVLQEVLDQKPAFRSLKQDVLPY 240

Query: 241 LVRSQLKSEILINGA------PQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA 294
           LVR+QL+S++  + +          +     N+ V  +IL+NAS PSFH++Y  G     
Sbjct: 241 LVRTQLRSDVFSDQSNVEENGNGNGKNNMQNNEVVLSQILSNASMPSFHQVYESGLG--- 297

Query: 295 PVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAEL 354
             R+THKCCVYIA  SKY VRLNSIQAFMD+NRDVIGE+NHLSGY+FSA +NI+HPSAEL
Sbjct: 298 -TRKTHKCCVYIADESKYFVRLNSIQAFMDVNRDVIGESNHLSGYSFSAHHNIVHPSAEL 356

Query: 355 GSKTT 359
           GSKTT
Sbjct: 357 GSKTT 361

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812131|ref|XP_002873949.1| acyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297319786|gb|EFH50208.1| acyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 255/365 (69%), Positives = 302/365 (82%), Gaps = 10/365 (2%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           MDFQVV+LAGG S  LVPLVSKEVPKALLPVANRPVLSYVL+ LE +N+KDLIVVVEG D
Sbjct: 1   MDFQVVILAGGFSSNLVPLVSKEVPKALLPVANRPVLSYVLDLLESNNLKDLIVVVEGED 60

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
           AAL+VGGWIS+A VDRLHVEVA V E+VGTAGALRAIAHHLTAKD+L+VSGD+VSD+PPG
Sbjct: 61  AALKVGGWISSACVDRLHVEVAAVAENVGTAGALRAIAHHLTAKDILIVSGDIVSDIPPG 120

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
           AV A HRRHDA VT M+C+ PVSG SE+G SG KDKTKKP   +IIG+D  KQFLL+IA 
Sbjct: 121 AVAATHRRHDAAVTVMLCAQPVSGPSESGGSGGKDKTKKPACDDIIGLDSLKQFLLYIAK 180

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
           GAE++KDTR++KSIL A G+++IR+DLMD+H+YAF RSVLQEVLDQK  F+SLK+DVLPY
Sbjct: 181 GAEIKKDTRVKKSILCAAGKIEIRSDLMDSHIYAFKRSVLQEVLDQKPAFRSLKEDVLPY 240

Query: 241 LVRSQLKSEILIN------GAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA 294
           LVR+QL+SEI  +            +     N+ V  +IL+NAS PSFH++Y  G +   
Sbjct: 241 LVRTQLRSEIFSDQNNVEENGNGNGKNNMQNNEVVLSQILSNASLPSFHQVYESGLDS-- 298

Query: 295 PVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAEL 354
             R+T+KCCVYIA  SK+ VRLNSIQAFMD+NRDVIG+ANHLSGY+FSA +NI+HPSAEL
Sbjct: 299 --RKTNKCCVYIADESKFFVRLNSIQAFMDVNRDVIGDANHLSGYSFSAHHNIVHPSAEL 356

Query: 355 GSKTT 359
           GSKTT
Sbjct: 357 GSKTT 361

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
TAIR|locus:1009023495	456	AT5G19485 [Arabidopsis thalian	0.977	0.776	0.683	2.6e-125
DICTYBASE|DDB_G0290693	440	eif2b3 "eukaryotic translation	0.939	0.772	0.251	3.5e-27
UNIPROTKB|F1P4Z9	437	EIF2B3 "Uncharacterized protei	0.867	0.718	0.287	4e-25
UNIPROTKB|F1NBJ8	418	EIF2B3 "Uncharacterized protei	0.872	0.755	0.284	4.6e-25
UNIPROTKB|A5PJI7	452	EIF2B3 "Translation initiation	0.930	0.745	0.270	4.4e-24
UNIPROTKB|Q4R6T3	452	EIF2B3 "Translation initiation	0.928	0.743	0.278	5.8e-24
ZFIN|ZDB-GENE-040426-1039	453	eif2b3 "eukaryotic translation	0.966	0.772	0.266	5.8e-24
RGD|620821	452	Eif2b3 "eukaryotic translation	0.928	0.743	0.278	4.7e-23
UNIPROTKB|P70541	452	Eif2b3 "Translation initiation	0.928	0.743	0.278	4.7e-23
UNIPROTKB|Q9NR50	452	EIF2B3 "Translation initiation	0.928	0.743	0.272	1.3e-22

TAIR|locus:1009023495 AT5G19485 [Arabidopsis thaliana (taxid:3702)]

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 250/366 (68%), Positives = 291/366 (79%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             MDFQVV+LAGG S  LVPLV+KEVPKALLPVANRPVLSYVL+ LE SN+KDLIVVVEG D
Sbjct:     1 MDFQVVILAGGFSSYLVPLVAKEVPKALLPVANRPVLSYVLDLLESSNLKDLIVVVEGED 60

Query:    61 AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPG 120
             AAL+VGGWIS+A VDRLHVEVA V E+VGTAGALRAIAHHLTAK             PPG
Sbjct:    61 AALKVGGWISSACVDRLHVEVAAVAENVGTAGALRAIAHHLTAKDILIVSGDIVSDIPPG 120

Query:   121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
             AV A HRRHDA VT M+C+ PVSG SE+G SG KDKTKKP   +IIG+D  KQFLL+IA 
Sbjct:   121 AVAATHRRHDAAVTVMLCAQPVSGPSESGGSGGKDKTKKPACDDIIGLDSLKQFLLYIAK 180

Query:   181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
             G E++KDTR++KSIL A G+M+IR+DLMD+H+YAF R+VLQEVLDQK  F+SLKQDVLPY
Sbjct:   181 GTEIKKDTRVKKSILCAAGKMEIRSDLMDSHIYAFKRAVLQEVLDQKPAFRSLKQDVLPY 240

Query:   241 LVRSQLKSEILI-------NGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGS 293
             LVR+QL+S++         NG   G+   +N N+ V  +IL+NAS PSFH++Y  G    
Sbjct:   241 LVRTQLRSDVFSDQSNVEENGNGNGKNNMQN-NEVVLSQILSNASMPSFHQVYESGLG-- 297

Query:   294 APVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAE 353
                R+THKCCVYIA  SKY VRLNSIQAFMD+NRDVIGE+NHLSGY+FSA +NI+HPSAE
Sbjct:   298 --TRKTHKCCVYIADESKYFVRLNSIQAFMDVNRDVIGESNHLSGYSFSAHHNIVHPSAE 355

Query:   354 LGSKTT 359
             LGSKTT
Sbjct:   356 LGSKTT 361

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0290693 eif2b3 "eukaryotic translation initiation factor 2B, subunit 3 gamma" [Dictyostelium discoideum (taxid:44689)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 92/366 (25%), Positives = 177/366 (48%)

Query:     3 FQVVVLA----GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIK---DLIVV 55
             FQVV+LA     G SK L P +   +P +LLP+ANRP++SY LE LE +  +   + +++
Sbjct:     6 FQVVILATDKASGNSK-LEP-IDATIPHSLLPIANRPLISYQLEFLEKAGFETKSEPVII 63

Query:    56 VEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXX 115
             V    +  ++  ++S  Y  ++ VE   + + + T   L  I   +  +           
Sbjct:    64 VVNETSQEKIKQYVSEIYKGKIEVEFFVLKDQLATCEILYRIRDKIRLEYFMVLNANLVL 123

Query:   116 XXP-PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY-NIIGMDPTKQ 173
                    +   HR+ ++ +T ++   P   + + G    +  TK+   + + I ++   Q
Sbjct:   124 EDTFIRQMADLHRKEESSLTVLL-KPPTPKVEQKGKGATETSTKQDKLFTDYIALEEKSQ 182

Query:   174 FLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL-DQKDK--- 229
              ++ +    E+E+D    KS+L+    + I  +L D  +Y F+R VL  ++ DQK+K   
Sbjct:   183 KIVMMEPATEVEEDLNFNKSLLKYFPNVTIYTNLQDTQLYIFSRWVLDLIIEDQKEKYPL 242

Query:   230 FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALG 289
             F  +K+ ++PYL+  Q+ +       P    +  N N  +S + +++ ++P F +   L 
Sbjct:   243 FFDIKKHLIPYLLSCQIPNIKRKRALPA---SAFNQNQTLS-QTMSSTTSP-FDQFSEL- 296

Query:   290 PNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSGYNFSAQNNII 348
                +A   +T KC  ++     YC+ +N+I+ +  INRD+  G+  +L     S +N  I
Sbjct:   297 ---NAQKNKTIKCFAHLLKKEGYCMNVNTIKNYQQINRDIAKGDLQYLPNEPKSEKNFFI 353

Query:   349 HPSAEL 354
              P+A +
Sbjct:   354 DPTANV 359

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006413 "translational initiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|F1P4Z9 EIF2B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 287 (106.1 bits), Expect = 4.0e-25, P = 4.0e-25
 Identities = 98/341 (28%), Positives = 158/341 (46%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV NRP+L Y L  LE +  +++IV+     
Sbjct:     1 MEFQAVVMAAGGGSRMTDLTSS-IPKPLLPVGNRPLLWYPLNLLERAGFEEVIVITRK-- 57

Query:    61 AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPG 120
                 +   +S     +L     +   D+GTA +LR I H                     
Sbjct:    58 ---EIQKMLSLDTKMKLDFVYISDNVDMGTADSLRHI-HQKIKTDVLVLSCDLITDVDLY 113

Query:   121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
              V    R HDA ++ ++   P    +E  + G K K K   + + IG+D T + LL +A 
Sbjct:   114 KVVDLFRTHDATLSMLMKKAPEP--TEV-APGQKGKKKPVEQRDFIGVDDTGKRLLFMAN 170

Query:   181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
              A+L+++  I++SIL+   +M IR  LMDAH+Y   + V+  +++ +    SL+ +++P+
Sbjct:   171 EADLDEELVIKRSILQKHPRMHIRTGLMDAHLYCLKKYVVDFLVENRT-ITSLRSELIPH 229

Query:   241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANAS-TPSFHELYALGPNGSA----- 294
             LVR Q  S   +     G   KE G  K     L   S     + L    P+ S      
Sbjct:   230 LVRKQFSSPTSLQ---HGLDNKEEGRKKKEQASLDIYSFIKEDNSLLKPAPDNSCWNDHR 286

Query:   295 -PVRRT-H----KCCVYIASNSKYCVRLNSIQAFMDINRDV 329
               +  T H    +C V+I      C R+N++  +++ NR V
Sbjct:   287 GDMNETLHEGKVRCYVHIMKEG-LCCRVNTLALYIEANRQV 326

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=IEA

GO:0014003 "oligodendrocyte development" evidence=IEA

GO:0051716 "cellular response to stimulus" evidence=IEA

UNIPROTKB|F1NBJ8 EIF2B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 97/341 (28%), Positives = 154/341 (45%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV NRP+L Y L  LE +  +++IV+     
Sbjct:     3 MEFQAVVMAAGGGSRMTDLTSS-IPKPLLPVGNRPLLWYPLNLLERAGFEEVIVITRK-- 59

Query:    61 AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPPG 120
                 +   +S     +L     +   D+GTA +LR I H                     
Sbjct:    60 ---EIQKMLSLDTKMKLDFVYISDNVDMGTADSLRHI-HQKIKTDVLVLSCDLITDVDLY 115

Query:   121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
              V    R HDA ++ ++   P       G  G K       R + IG+D T + LL +A 
Sbjct:   116 KVVDLFRTHDATLSMLMKKAPEPTEVAPGQKGKKKPASVEQR-DFIGVDDTGKRLLFMAN 174

Query:   181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY 240
              A+L+++  I++SIL+   +M IR  LMDAH+Y   + V+  +++ +    SL+ +++P+
Sbjct:   175 EADLDEELVIKRSILQKHPRMHIRTGLMDAHLYCLKKYVVDFLVENRT-ITSLRSELIPH 233

Query:   241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANAS-TPSFHELYALGPNGSA----- 294
             LVR Q  S   +     G   KE G  K     L   S     + L    P+ S      
Sbjct:   234 LVRKQFSSPTSLQ---HGLDNKEEGRKKKEQASLDIYSFIKEDNSLLKPAPDNSCWNDHR 290

Query:   295 -PVRRT-H----KCCVYIASNSKYCVRLNSIQAFMDINRDV 329
               +  T H    +C V+I      C R+N++  +++ NR V
Sbjct:   291 GDMNETLHEGKVRCYVHIMKEG-LCCRVNTLALYIEANRQV 330

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|A5PJI7 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 4.4e-24, P = 4.4e-24
 Identities = 100/370 (27%), Positives = 172/370 (46%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IV+    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITT-KD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 +    +     ++ +++  +P+  D+GTA +LR I   L                 
Sbjct:    59 VQKALCADFNKM---KMKLDIVCIPDEADMGTADSLRHIYQKLKTDVLVLSCDLITDVAL 115

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R HDA + AM+       L      G K K K   + + +G+D T + LL +
Sbjct:   116 HEVVDL-FRAHDASL-AMLMRKGQESLEPV--PGQKGKKKAVEQRDFVGVDSTGKRLLFM 171

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++     L+DAH+Y   + V+  +++ K    S++ +++
Sbjct:   172 ANEADLDEELIIKGSILQKHPRIRFHTGLVDAHLYCLKKYVVDFLMENKS-ITSIRSELI 230

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRIL--------ANASTPSFHELY---A 287
             PYLVR Q  S      + QGQ+ KE    K   + L        AN  T + ++      
Sbjct:   231 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLTLAPYDTCWNAC 286

Query:   288 LGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
              G +     R   +C V+I      C R++++  +M+ NR V    + L       + ++
Sbjct:   287 RGDSWEGLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV----SKLLPV-ICPEESL 340

Query:   348 IHPSAELGSK 357
             IH SA++ SK
Sbjct:   341 IHSSAQIVSK 350

GO:0006413 "translational initiation" evidence=ISS

GO:0014003 "oligodendrocyte development" evidence=ISS

GO:0051716 "cellular response to stimulus" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|Q4R6T3 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Macaca fascicularis (taxid:9541)]

 Score = 278 (102.9 bits), Expect = 5.8e-24, P = 5.8e-24
 Identities = 103/370 (27%), Positives = 169/370 (45%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLP  N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPAGNKPLIWYPLNLLERVGFEEVIVVTT-RD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  ++  ++  +P+D  +GTA +LR +   L                 
Sbjct:    59 ----VQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKTDVLVLSCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA + AM+       L      G K K K   + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASL-AMLMRKGQDSLEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++    DL+DAH+Y   + V+ + L +     S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKYPRIRFHTDLVDAHLYCLKKYVV-DFLMENGSITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
             PYLVR Q  S      + QGQ+ KE    K        Y  L  A+T +     A     
Sbjct:   230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFLKEANTLNLAPYDACWNAC 285

Query:   289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
              G       R   +C V+I      C R++++  +M+ NR V      LS      +  +
Sbjct:   286 RGDRWEDLPRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSA--LCPEEPL 339

Query:   348 IHPSAELGSK 357
             +H SA++ SK
Sbjct:   340 VHSSAQIVSK 349

GO:0005737 "cytoplasm" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0014003 "oligodendrocyte development" evidence=ISS

GO:0051716 "cellular response to stimulus" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

ZFIN|ZDB-GENE-040426-1039 eif2b3 "eukaryotic translation initiation factor 2B, subunit 3 gamma" [Danio rerio (taxid:7955)]

 Score = 278 (102.9 bits), Expect = 5.8e-24, P = 5.8e-24
 Identities = 101/379 (26%), Positives = 174/379 (45%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGA 59
             M+ Q V++A G   +++ L +   PK LLPV N+P++ Y L  LE    +++IV+  +  
Sbjct:     1 MELQAVLMAAGGGSRMMDL-TYNTPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTKEV 59

Query:    60 DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKXXXXXXXXXXXXXPP 119
               AL     +      +L V       D+GTA ALR I   +                  
Sbjct:    60 QKALSTDQRLKTDVKMKLDVVCIQEEADMGTADALRHIQQKIKTDILVLSCDLITDVALH 119

Query:   120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIA 179
               V    R H+A ++ M+ S  V   +E    G K K K   + + +G+D T + LL +A
Sbjct:   120 EVVDL-FRAHNATLS-MLMS-KVHEFTET-VPGQKGKKKAGEQRDFVGVDVTGKRLLFMA 175

Query:   180 TGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 239
               A+LE+   +RKSI+R   +M I+  L+DAH+Y   RSV+  ++  K    S++ +++P
Sbjct:   176 NEADLEEGLVLRKSIMRKHPRMFIKTGLLDAHLYCLKRSVVDFLVHNKS-VTSIRGELVP 234

Query:   240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA----- 294
             YLVR Q    +  N     + +++N   + ++  +   ST     L  L    S      
Sbjct:   235 YLVRKQFSKSL--NSQHVTEDSEKNQKQQEAHINMDLLSTSKDEALLQLARERSCWNDHR 292

Query:   295 -PVRRTH-----KCCVYIASNSKYCVRLNSIQAFMDINRDV--------IGEANHLSGYN 340
               +   +     +C V+I  +   C R+N++ A+++ NR V        I     +S  +
Sbjct:   293 GDMSEAYHGGKIRCYVHIMEDGM-CYRVNTLAAYIEANRVVPKLFEEPPIHPTAVVSERS 351

Query:   341 FSAQNNIIHPSAELGSKTT 359
                 ++II PS ++  KT+
Sbjct:   352 LVGSDSIIGPSCQISDKTS 370

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

RGD|620821 Eif2b3 "eukaryotic translation initiation factor 2B, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 270 (100.1 bits), Expect = 4.7e-23, P = 4.7e-23
 Identities = 103/370 (27%), Positives = 172/370 (46%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT-KD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  +L  ++  +P+  D+GTA +LR I   L                 
Sbjct:    59 ----VQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKTDVLVLGCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA +  ++     S     G  G K KT +  + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASLAMLMRKGQESTEPVPGQKGKK-KTVE--QRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++  +  L+DAH+Y   + V+  +++ K    S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKHPRIHFQTGLVDAHLYCLKKYVVDFLMENKS-ITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA--PV 296
             PYLVR Q  S      + Q Q+ KE    K   + L   S         L P  +     
Sbjct:   230 PYLVRKQFSSA----SSQQRQEDKEEDLKKKEPKSLDIYSFIKKDNTLTLAPYDACWNAF 285

Query:   297 RRTH---------KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
             RR           +C V+I      C R++++  +M+ NR V      LS      + ++
Sbjct:   286 RRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSV--LCPEESM 339

Query:   348 IHPSAELGSK 357
             IHPSA++ +K
Sbjct:   340 IHPSAQIANK 349

GO:0003743 "translation initiation factor activity" evidence=ISO;ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO;IGI;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISO;ISS;IDA;IPI

GO:0006412 "translation" evidence=TAS

GO:0006413 "translational initiation" evidence=ISO;ISS

GO:0006417 "regulation of translation" evidence=IMP

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISO;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009408 "response to heat" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=IDA

GO:0014003 "oligodendrocyte development" evidence=ISO;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0032057 "negative regulation of translational initiation in response to stress" evidence=IMP

GO:0043434 "response to peptide hormone stimulus" evidence=IDA

GO:0051716 "cellular response to stimulus" evidence=ISO;ISS

UNIPROTKB|P70541 Eif2b3 "Translation initiation factor eIF-2B subunit gamma" [Rattus norvegicus (taxid:10116)]

 Score = 270 (100.1 bits), Expect = 4.7e-23, P = 4.7e-23
 Identities = 103/370 (27%), Positives = 172/370 (46%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT-KD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPE--DVGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  +L  ++  +P+  D+GTA +LR I   L                 
Sbjct:    59 ----VQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKTDVLVLGCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA +  ++     S     G  G K KT +  + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASLAMLMRKGQESTEPVPGQKGKK-KTVE--QRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++  +  L+DAH+Y   + V+  +++ K    S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKHPRIHFQTGLVDAHLYCLKKYVVDFLMENKS-ITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA--PV 296
             PYLVR Q  S      + Q Q+ KE    K   + L   S         L P  +     
Sbjct:   230 PYLVRKQFSSA----SSQQRQEDKEEDLKKKEPKSLDIYSFIKKDNTLTLAPYDACWNAF 285

Query:   297 RRTH---------KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
             RR           +C V+I      C R++++  +M+ NR V      LS      + ++
Sbjct:   286 RRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSV--LCPEESM 339

Query:   348 IHPSAELGSK 357
             IHPSA++ +K
Sbjct:   340 IHPSAQIANK 349

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|Q9NR50 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 101/370 (27%), Positives = 168/370 (45%)

Query:     1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
             M+FQ VV+A G   ++  L S  +PK LLPV N+P++ Y L  LE    +++IVV    D
Sbjct:     1 MEFQAVVMAVGGGSRMTDLTSS-IPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT-RD 58

Query:    61 AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKXXXXXXXXXXXXXP 118
                 V   + A +  ++  ++  +P+D  +GTA +LR I   L                 
Sbjct:    59 ----VQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVAL 114

Query:   119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHI 178
                V    R +DA + AM+       +      G K K K   + + IG+D T + LL +
Sbjct:   115 HEVVDL-FRAYDASL-AMLMRKGQDSIEPV--PGQKGKKKAVEQRDFIGVDSTGKRLLFM 170

Query:   179 ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL 238
             A  A+L+++  I+ SIL+   ++     L+DAH+Y   + ++ + L +     S++ +++
Sbjct:   171 ANEADLDEELVIKGSILQKHPRIRFHTGLVDAHLYCLKKYIV-DFLMENGSITSIRSELI 229

Query:   239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVS------YRILANASTPSFHELYAL---- 288
             PYLVR Q  S      + QGQ+ KE    K        Y  +  A+T +     A     
Sbjct:   230 PYLVRKQFSSA----SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNAC 285

Query:   289 -GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNI 347
              G       R   +C V+I      C R++++  +M+ NR V      LS      +   
Sbjct:   286 RGDRWEDLSRSQVRCYVHIMKEG-LCSRVSTLGLYMEANRQV---PKLLSA--LCPEEPP 339

Query:   348 IHPSAELGSK 357
             +H SA++ SK
Sbjct:   340 VHSSAQIVSK 349

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0006413 "translational initiation" evidence=IDA;TAS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=IDA

GO:0009408 "response to heat" evidence=ISS;TAS

GO:0014003 "oligodendrocyte development" evidence=IMP

GO:0032057 "negative regulation of translational initiation in response to stress" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=IDA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0051716 "cellular response to stimulus" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=ISS

GO:0043434 "response to peptide hormone stimulus" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	362
cd04198	214	cd04198, eIF-2B_gamma_N, The N-terminal domain of	4e-65
cd02507	216	cd02507, eIF-2B_gamma_N_like, The N-terminal of eI	3e-50
cd04181	217	cd04181, NTP_transferase, NTP_transferases catalyz	6e-25
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	2e-24
cd06915	223	cd06915, NTP_transferase_WcbM_like, WcbM_like is a	2e-18
cd04197	217	cd04197, eIF-2B_epsilon_N, The N-terminal domain o	4e-16
pfam00483	247	pfam00483, NTP_transferase, Nucleotidyl transferas	1e-13
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	4e-13
COG1209	286	COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel	3e-11
cd06422	221	cd06422, NTP_transferase_like_1, NTP_transferase_l	6e-11
cd06425	233	cd06425, M1P_guanylylT_B_like_N, N-terminal domain	7e-11
cd06426	220	cd06426, NTP_transferase_like_2, NTP_trnasferase_l	3e-10
cd04189	236	cd04189, G1P_TT_long, G1P_TT_long represents the l	6e-09
cd06428	257	cd06428, M1P_guanylylT_A_like_N, N-terminal domain	9e-09
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	2e-08
cd02523	229	cd02523, PC_cytidylyltransferase, Phosphocholine c	3e-07
pfam12804	178	pfam12804, NTP_transf_3, MobA-like NTP transferase	4e-07
cd02540	229	cd02540, GT2_GlmU_N_bac, N-terminal domain of bact	4e-07
PRK14353	446	PRK14353, glmU, bifunctional N-acetylglucosamine-1	6e-07
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	8e-07
COG1213	239	COG1213, COG1213, Predicted sugar nucleotidyltrans	2e-06
COG4750	231	COG4750, LicC, CTP:phosphocholine cytidylyltransfe	3e-06
cd02538	240	cd02538, G1P_TT_short, G1P_TT_short is the short f	6e-06
COG0746	192	COG0746, MobA, Molybdopterin-guanine dinucleotide	8e-06
cd02503	181	cd02503, MobA, MobA catalyzes the formation of mol	1e-05
cd02516	218	cd02516, CDP-ME_synthetase, CDP-ME synthetase is i	2e-05
TIGR01208	353	TIGR01208, rmlA_long, glucose-1-phosphate thymidyl	2e-05
PRK15480	292	PRK15480, PRK15480, glucose-1-phosphate thymidylyl	4e-05
TIGR01207	286	TIGR01207, rmlA, glucose-1-phosphate thymidylyltra	7e-05
TIGR02623	254	TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti	7e-05
cd02541	267	cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca	1e-04
cd04182	186	cd04182, GT_2_like_f, GT_2_like_f is a subfamily o	1e-04
COG1210	291	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell	1e-04
TIGR00453	217	TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phospha	3e-04
PRK00155	227	PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphat	5e-04
PRK14358	481	PRK14358, glmU, bifunctional N-acetylglucosamine-1	6e-04
PRK09382	378	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythri	7e-04
COG1211	230	COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erith	9e-04
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	0.001
TIGR01105	297	TIGR01105, galF, UTP-glucose-1-phosphate uridylylt	0.001
COG2068	199	COG2068, COG2068, Uncharacterized MobA-related pro	0.002
cd02524	253	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr	0.004

>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score =  205 bits (523), Expect = 4e-65
 Identities = 86/220 (39%), Positives = 126/220 (57%), Gaps = 8/220 (3%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
           FQ V+LAGG   +L PL    +PKALLPVAN+P++ Y L+ LE +  +D+IVVV   + A
Sbjct: 1   FQAVILAGGGGSRLYPLTDN-IPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQA 59

Query: 63  LRVGGWISA--AYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
                  S       +L      + ED+GTA +LR I   +  KD LV+S DL++D+P  
Sbjct: 60  EISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKIK-KDFLVLSCDLITDLPLI 118

Query: 121 AVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIAT 180
            +   HR HDA +T ++   PVS   +    G K K+KK    ++IG+D   Q LL I +
Sbjct: 119 ELVDLHRSHDASLTVLLYPPPVSSEQK----GGKGKSKKADERDVIGLDEKTQRLLFITS 174

Query: 181 GAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220
             +L++D  +RKS+L+   ++ I   L+DAH+Y F R VL
Sbjct: 175 EEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214

>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

 Score =  167 bits (424), Expect = 3e-50
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 22/228 (9%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
           FQ VVLA G   + +PL + ++PKALLPVAN P++ Y LE LE + ++++ VV      A
Sbjct: 1   FQAVVLADGFGSRFLPL-TSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQA 59

Query: 63  LRVGGWISAAYVDRLHVEVATVP----EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
           +      S        + V  +     E  G A  LR I   +   D L++S DLVS++P
Sbjct: 60  IIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIR-SDFLLLSCDLVSNIP 118

Query: 119 PGAVTAA----HRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF 174
              +        +   A +T ++ S PVS           +++KK    ++I +D   Q 
Sbjct: 119 LSELLEERRKKDKNAIATLTVLLASPPVS----------TEQSKKTEEEDVIAVDSKTQR 168

Query: 175 LLHIATGAELEKDTR--IRKSILRAVGQMDIRADLMDAHMYAFNRSVL 220
           LL +    +L++D    IRKS+L     + IR DL+D H+Y  +  VL
Sbjct: 169 LLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216

>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

 Score =  100 bits (251), Expect = 6e-25
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 49/245 (20%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGADAAL 63
            V+LA G   +L PL +   PK LLP+A +P+L Y++E+L  + I ++I+VV    +   
Sbjct: 1   AVILAAGKGTRLRPL-TDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQ-- 57

Query: 64  RVGGWISAAYVD--RLHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGDLVSDVPP 119
                I   + D  +  V +  V ++   GTAGA+R     L   D LVV+GD+++D+  
Sbjct: 58  -----IEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLDL 112

Query: 120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIA 179
             +   HR   A  T  +  V                   P RY ++ +D   + +    
Sbjct: 113 SELLRFHREKGADATIAVKEVED-----------------PSRYGVVELDDDGR-VTRF- 153

Query: 180 TGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 239
               +EK T + +S            +L +A +Y F   +L  + +   + +    D +P
Sbjct: 154 ----VEKPT-LPES------------NLANAGIYIFEPEILDYIPEILPRGEDELTDAIP 196

Query: 240 YLVRS 244
            L+  
Sbjct: 197 LLIEE 201

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score =  102 bits (255), Expect = 2e-24
 Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 46/244 (18%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + V+LAGG   +L PL + + PK LLP+A +P++ YVLE L  + ++++++VV       
Sbjct: 3   KAVILAGGYGTRLRPL-TDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVG------ 55

Query: 64  RVGGWISAAYVDR--LHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGDLVSDVPP 119
            +G  I   + D   L V +  V E    GTAGAL+     L   D LV++GD+++D+  
Sbjct: 56  YLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLDL 115

Query: 120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIA 179
             +   H++  A+ T  I    V   SE G                              
Sbjct: 116 SELLEFHKKKGALAT--IALTRVLDPSEFG------------------------------ 143

Query: 180 TGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 239
                + D R+ +   +   + +  ++L++A +Y F+  V  + +++ ++F   ++++LP
Sbjct: 144 VVETDDGDGRVVEFREKPGPE-EPPSNLINAGIYIFDPEVF-DYIEKGERF-DFEEELLP 200

Query: 240 YLVR 243
            L  
Sbjct: 201 ALAA 204

Length = 358

>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases

 Score = 82.6 bits (205), Expect = 2e-18
 Identities = 68/249 (27%), Positives = 97/249 (38%), Gaps = 58/249 (23%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLI--------VVV 56
            V+LAGG   +L  +V K++PK L PVA RP L Y+LE L    I  ++         + 
Sbjct: 1   AVILAGGLGTRLRSVV-KDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIE 59

Query: 57  EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD 116
           E      R G  I   YV          PE +GT GA++     L     LV++GD   D
Sbjct: 60  EYFGDGYRGG--IRIYYVIE--------PEPLGTGGAIKNALPKLPEDQFLVLNGDTYFD 109

Query: 117 VPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLL 176
           V   A+ AA R   A  T M     V   S  G+                          
Sbjct: 110 VDLLALLAALRASGADAT-MAL-RRVPDASRYGN-------------------------- 141

Query: 177 HIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD 236
                  ++ D R+   + +  G       L++  +Y   + +L E+    D F SL+ D
Sbjct: 142 -----VTVDGDGRVIAFVEKGPGA---APGLINGGVYLLRKEILAEI--PADAF-SLEAD 190

Query: 237 VLPYLVRSQ 245
           VLP LV+  
Sbjct: 191 VLPALVKRG 199

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223

>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score = 75.7 bits (187), Expect = 4e-16
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 27/231 (11%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAA 62
            Q VVLA   +++  PL +KE P+ LLP+AN P++ Y LE L L+ ++++ V    + + 
Sbjct: 1   LQAVVLADSFNRRFRPL-TKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFC-CSHSD 58

Query: 63  -----LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAI-AHHLTAKDVLVVSGDLVSD 116
                +    W        + V +    +      ALR + A  L   D ++VSGD+VS+
Sbjct: 59  QIKEYIEKSKWSKPKS-SLMIVIIIMSEDCRSLGDALRDLDAKGLIRGDFILVSGDVVSN 117

Query: 117 VPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT 171
           +    +   H+       +A++T ++         EA       +T +     +I +DP 
Sbjct: 118 IDLKEILEEHKERRKKDKNAIMTMVL--------KEASPPHRTRRTGEEF---VIAVDPK 166

Query: 172 KQFLLHIATGAELEKDTRIR--KSILRAVGQMDIRADLMDAHMYAFNRSVL 220
              LLH       +  +       +L +  +++IR DL+D H+   +  VL
Sbjct: 167 TSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217

>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase

 Score = 69.5 bits (171), Expect = 1e-13
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 11/157 (7%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           ++LAGG+  +L PL ++ + K L+PV ++ P++ Y L +L  + I++ IV+    +    
Sbjct: 3   IILAGGSGTRLWPL-TRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVIC-TQEHRFL 60

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD---VLVVSGDLVSDVPPGA 121
           V   +       L V  A  PE  GTA A+   A  L   D   VLV+ GD +  +    
Sbjct: 61  VAEQLGDGSKFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDFEE 120

Query: 122 VTAAHRRHDAVVTAMICSVPVS-----GLSEAGSSGA 153
                R   A  T     VPV      G+ E   +G 
Sbjct: 121 AVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGR 157

This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 69.5 bits (171), Expect = 4e-13
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 4/115 (3%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + V+LA G   ++ PL     PK +LPVA +P+L +++E L  + I D + VV      +
Sbjct: 2   KAVILAAGKGTRMRPLTET-RPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
           R   +        + +E     E +GTA AL +   ++  +  LV++GD++ D  
Sbjct: 61  R--EYFGDGSRGGVPIEYVVQEEQLGTADALGSAKEYVDDE-FLVLNGDVLLDSD 112

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 63.0 bits (154), Expect = 3e-11
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 6/109 (5%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV--EGADAAL 63
           V+LAGG+  +L PL ++ VPK LLPV ++P++ Y LE L L+ I+D+++VV  E      
Sbjct: 4   VILAGGSGTRLRPL-TRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFK 62

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD 112
            + G  S   VD   +  A  PE  G A A+      +   D ++  GD
Sbjct: 63  ELLGDGSDFGVD---ITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYLGD 108

Length = 286

>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family

 Score = 61.0 bits (149), Expect = 6e-11
 Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 20/140 (14%)

Query: 7   VLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVG 66
           +LA G   ++ PL +   PK L+PVA +P++ + L++L  + I+ ++V            
Sbjct: 4   ILAAGLGTRMRPL-TDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNT---------- 52

Query: 67  GWISAAYVDRLH-----VEVATVPEDV---GTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
             ++      L      + +    E      T G ++     L  +  LVV+GD++ D  
Sbjct: 53  HHLADQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGD 112

Query: 119 PGAVTAAHR-RHDAVVTAMI 137
              +   H  R DA++  + 
Sbjct: 113 LAPLLLLHAWRMDALLLLLP 132

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221

>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 49/246 (19%), Positives = 99/246 (40%), Gaps = 48/246 (19%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGADAAL 63
            ++L GG   +L PL    VPK L+   N+P++ + +E L  + +K++I+ V    +  +
Sbjct: 3   ALILVGGYGTRLRPLTLT-VPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMV 61

Query: 64  RVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLT--AKDVLVVSGDLVSDVPP 119
                    Y  +L +++    E   +GTAG L      L    +   V++ D++ D P 
Sbjct: 62  P----FLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFPL 117

Query: 120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIA 179
             +   H++H A  T ++                  K + P +Y ++  D          
Sbjct: 118 AELLDFHKKHGAEGTILV-----------------TKVEDPSKYGVVVHD---------- 150

Query: 180 TGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 239
                E   RI + + +         + ++A +Y  N SVL  +     +  S+++++ P
Sbjct: 151 -----ENTGRIERFVEKPK---VFVGNKINAGIYILNPSVLDRI---PLRPTSIEKEIFP 199

Query: 240 YLVRSQ 245
            +    
Sbjct: 200 KMASEG 205

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233

>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 16/136 (11%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV----EGAD 60
           VV++AGG   +L PL ++  PK +L V  +P+L  ++++      ++  + V    E  +
Sbjct: 1   VVIMAGGKGTRLRPL-TENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIE 59

Query: 61  AALRVGGWISAAYVDRLHVEVATVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP 118
                G         +  V ++ V ED  +GTAGAL  +    T    LV++GD+++++ 
Sbjct: 60  DYFGDG--------SKFGVNISYVREDKPLGTAGALSLLPEKPTD-PFLVMNGDILTNLN 110

Query: 119 PGAVTAAHRRHDAVVT 134
              +   H+ ++A  T
Sbjct: 111 YEHLLDFHKENNADAT 126

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220

>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LAGG   +L PL +   PK L+PVA +P++ Y +E L  + I+D+ +VV
Sbjct: 4  LILAGGKGTRLRPL-TYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVV 53

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236

>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 5   VVVLAGGTSK--KLVPLVSKEVPKALLPVANRPVLSYVLEQL-ELSNIKDLIVVVEGADA 61
            V+L GG  K  +  PL S +VPK L PVA +P++ + +E   ++ ++K+++++    ++
Sbjct: 1   AVILVGGPQKGTRFRPL-SLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPES 59

Query: 62  ALRVGGWISAAYVD-RLHVEVATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDV 117
                 +IS A  +  + +      + +GTAG L      + A       V++ D+  D 
Sbjct: 60  VFS--DFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDF 117

Query: 118 PPGAVTAAHRRHDAVVTAM 136
           P   +   H++H A  T +
Sbjct: 118 PLQELLEFHKKHGASGTIL 136

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 17/140 (12%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGA 59
           M    V+LA G   ++      ++PK L PVA +P+L +V++        D++VVV  GA
Sbjct: 1   MSLSAVILAAGKGTRM----KSDLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGA 56

Query: 60  DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA---KDVLVVSGD--LV 114
           +        +  A  +R  VE     E +GT  A+      L      DVLV+ GD  L+
Sbjct: 57  EQ-------VREALAERDDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLI 109

Query: 115 SDVPPGAVTAAHRRHDAVVT 134
           +      + AAH  H A  T
Sbjct: 110 TAETLEELLAAHPAHGAAAT 129

Length = 460

>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 18/116 (15%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++LA G   +L PL +++ PK LL +  +P+L   +E L+ + I D+++V         
Sbjct: 1   AIILAAGRGSRLRPL-TEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVT-------- 51

Query: 65  VGGWISAAYVDRL--HVEVATV----PEDVGTAGALRAIAHHLTAKDVLVVSGDLV 114
             G+      + L  +  +  V      +     +L  +A     +D L++ GD+V
Sbjct: 52  --GYKKEQIEELLKKYPNIKFVYNPDYAETNNIYSL-YLARDFLDEDFLLLEGDVV 104

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229

>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            V+LAGG S ++         KALLP+  +P+L  VL++  L    D +VVV        
Sbjct: 1   GVILAGGRSSRM------GGDKALLPLGGKPLLERVLDR--LRPAGDEVVVVTNRPEI-- 50

Query: 65  VGGWISAAYVDRLHVEVATVP-EDVGTAGALRAIAHHLTAKD-VLVVSGDLVSDVPPGAV 122
                 AA +  L V V   P    G    L A        D VLV++ D+   + P  +
Sbjct: 51  ------AAALAGLGVPVVPDPDPGQGPLAGLAAGLRAAPDADAVLVLACDMP-FLTPDLL 103

Query: 123 T---AAHRRHDAVVTA 135
               AA     A +  
Sbjct: 104 RRLLAALEASGADIAV 119

This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178

>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 5   VVVLAGG--T---SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EG 58
            V+LA G  T   S           PK L P+A +P+L +VL+         ++VVV  G
Sbjct: 1   AVILAAGKGTRMKSDL---------PKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHG 51

Query: 59  ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT--AKDVLVVSGD--LV 114
           A+             +   +VE     E +GT  A++     L     DVLV+ GD  L+
Sbjct: 52  AEQV--------KKALANPNVEFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLI 103

Query: 115 SDVPPGAVTAAHRRHDAVVT 134
           +      +  AHR   A VT
Sbjct: 104 TPETLQRLLEAHREAGADVT 123

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229

>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 17/134 (12%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           ++LA G   ++       +PK L PVA RP+L++VL          + VVV G  A    
Sbjct: 9   IILAAGEGTRM----KSSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVV-GPGAEA-- 61

Query: 66  GGWISAAYVDRLHVEVATV--PEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPP 119
                AA   ++  +       E +GTA A+ A    L     DVLV+ GD  L++    
Sbjct: 62  ----VAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETL 117

Query: 120 GAVTAAHRRHDAVV 133
             +         VV
Sbjct: 118 ARLRERLADGADVV 131

Length = 446

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 50.2 bits (121), Expect = 8e-07
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 16/115 (13%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EGA 59
           M+   ++LA G   ++    SK +PK L  V  +P++ +V++ ++ + I  ++ VV  GA
Sbjct: 1   MNRYAIILAAGKGTRMK---SK-LPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGA 56

Query: 60  DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD--VLVVSGD 112
           +    V G       DR   E A   E +GT  A+      L  K+   LV+ GD
Sbjct: 57  EEVKEVLG-------DR--SEFALQEEQLGTGHAVMQAEEFLADKEGTTLVICGD 102

Length = 458

>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEG 58
           V+LA G   +L P    ++PKAL+ V  R ++   +E L  + I + +VV  G
Sbjct: 6  AVILAAGFGSRLGP----DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNG 55

Length = 239

>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LA G   + VPL ++  PK+LL V   P++   +EQL  + I D+ +VV
Sbjct: 4  IILAAGLGSRFVPL-TQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVV 53

Length = 231

>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 20/116 (17%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           ++LAGG+  +L PL +K V K LLPV ++P++ Y L  L L+ I++++++    D  L  
Sbjct: 4   IILAGGSGTRLYPL-TKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPL-- 60

Query: 66  GGWISAAYVDRL--------HVEVATVPEDVGTAGALRAIAHHLTAKD-VLVVSGD 112
                  + + L         +  A  P+  G A A   I       D V ++ GD
Sbjct: 61  -------FKELLGDGSDLGIRITYAVQPKPGGLAQAF-IIGEEFIGDDPVCLILGD 108

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240

>gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 23/139 (16%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
                V+LAGG S+++         KALLP+  RP++ +V+++L       +I       
Sbjct: 3   TPMTGVILAGGKSRRMRD-------KALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQG 55

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPG 120
                G          L V V       G    + A   H   + VLV+  D+   +PP 
Sbjct: 56  RYAEFG----------LPV-VPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPF-IPPE 103

Query: 121 AV----TAAHRRHDAVVTA 135
            V    +A  +   A+V A
Sbjct: 104 LVERLLSAFKQTGAAIVPA 122

Length = 192

>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 24/133 (18%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           V+LAGG S+++         KALL +  +P+L +VLE+L+   + D +V+    D     
Sbjct: 4   VILAGGKSRRM------GGDKALLELGGKPLLEHVLERLK--PLVDEVVISANRD----- 50

Query: 66  GGWISAAYVDRLHVEVAT-VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAV-- 122
                      L V V    P   G    + A      A  VLV++ D+   +PP  +  
Sbjct: 51  -----QERYALLGVPVIPDEPPGKGPLAGILAALRAAPADWVLVLACDMP-FLPPELLER 104

Query: 123 --TAAHRRHDAVV 133
              AA    DAVV
Sbjct: 105 LLAAAEEGADAVV 117

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. Length = 181

>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 39/155 (25%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLE-LSNIKDLIVVVEGADAAL 63
            ++LA G+  ++      ++PK  L +  +PVL + LE       I +++VVV   D   
Sbjct: 3   AIILAAGSGSRM----GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDID- 57

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALR------AIAHHLTAKD--VLV------- 108
                        L   V  V       GA R       +     A    VL+       
Sbjct: 58  ----LAKELAKYGLSKVVKIVE-----GGATRQDSVLNGLKALPDADPDIVLIHDAARPF 108

Query: 109 VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS 143
           VS +L+  +    + A  + + A + A    VPV+
Sbjct: 109 VSPELIDRL----IDAL-KEYGAAIPA----VPVT 134

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218

>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LA G   +L PL     PK L+PVAN+P+L Y +E L  + I D+ +VV
Sbjct: 3  LILAAGKGTRLRPLTFTR-PKQLIPVANKPILQYAIEDLAEAGITDIGIVV 52

The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353

>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++    D   R 
Sbjct: 7   IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTP-RF 64

Query: 66  GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV---SDVPPGAV 122
              +       L+++    P   G A A       +   D  +V GD +    D+P    
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLME 124

Query: 123 TAAHRRHDAVVTA 135
            A ++   A V A
Sbjct: 125 AAVNKESGATVFA 137

Length = 292

>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL-- 63
           ++LAGG+  +L P +++ V K LLP+ ++P++ Y L  L L+ I+D++++    D     
Sbjct: 3   IILAGGSGTRLYP-ITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQ 61

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV---SDVPPG 120
           ++ G  S   V+   +  A  P   G A A       +      +V GD +    D+   
Sbjct: 62  QLLGDGSQWGVN---LSYAVQPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDL 118

Query: 121 AVTAAHRRHDAVVTA 135
              AA R   A V A
Sbjct: 119 LKRAAARESGATVFA 133

Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286

>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 36/160 (22%)

Query: 4   QVVVLAGGTSKKLVPLVSKEV---PKALLPVANRPVLSYVLEQLELSNIKDLIVV----- 55
           + V+LAGG   ++    S+E    PK ++ +  +P+L ++++      I D I+      
Sbjct: 1   KAVILAGGLGTRI----SEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKG 56

Query: 56  -----------VEGADAALRVGGWISAAYVDRLHVE---VATVPEDVG----TAGALRAI 97
                      +  +D    +    +   V    VE   V  V  D G    T G L+ +
Sbjct: 57  YVIKEYFANYFLHMSDVTFHMAD--NTMEVHHKRVEPWRVTLV--DTGESTQTGGRLKRV 112

Query: 98  AHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHD--AVVTA 135
             +L  +      GD V+D+   A+ A HR+H   A VTA
Sbjct: 113 REYLDDEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTA 152

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 4  QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          + V+ A G   + +P  +K +PK +LP+ ++PV+ Y++E+   + I+D+I+V 
Sbjct: 2  KAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVT 53

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267

>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 24/135 (17%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++LA G S ++         K LLP+  +P+L + L+    + +  +IVV+     A+R
Sbjct: 3   AIILAAGRSSRM------GGNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVR 56

Query: 65  VGGWISAAYVDRLHVEVATVP---EDVGT--AGALRAIAHHLTAKDVLVVSGDLVSDVPP 119
                  A +  L V V   P   E + +  A  L A+     A  VL++  D    V  
Sbjct: 57  -------AALAGLPVVVVINPDWEEGMSSSLAAGLEALPADADA--VLILLADQP-LVTA 106

Query: 120 G---AVTAAHRRHDA 131
               A+  A R   A
Sbjct: 107 ETLRALIDAFREDGA 121

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 186

>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          V+ A G   + +P  +K +PK +LP+ ++P++ Y++E+   + I+++++V 
Sbjct: 8  VIPAAGLGTRFLP-ATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVT 57

Length = 291

>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
           V+ A G   +        VPK  L +  RP+L + L+        D +VVV
Sbjct: 2  AVIPAAGRGTRF----GSGVPKQYLELGGRPLLEHALDAFLAHPAIDEVVVV 49

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 217

>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          M    ++ A G   ++      + PK  LP+  +P+L + LE        D I+VV
Sbjct: 2  MMVYAIIPAAGKGSRM----GADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVV 53

Length = 227

>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 23/147 (15%)

Query: 3   FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV----EG 58
             VV+LA G   ++       +PK L PVA RP++++ ++       + ++VV     E 
Sbjct: 8   LDVVILAAGQGTRM----KSALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQ 63

Query: 59  ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK--DVLVVSGD--LV 114
            +AAL+  G           V  A   + +GT  A  + A  LT    D+LV+ GD  L+
Sbjct: 64  VEAALQGSG-----------VAFARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLL 112

Query: 115 SDVPPGAVTAAHRRHDAVVTAMICSVP 141
                 A+ A HR   + +T +   +P
Sbjct: 113 RPDTLRALVADHRAQGSAMTILTGELP 139

Length = 481

>gnl|CDD|236492 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQL-ELSNIKDLIVVVEGA 59
           D  +V++A G S +     S EV K  L +  +P+  +VLE L      K+++VV+   
Sbjct: 4  SDISLVIVAAGRSTRF----SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPD 59

Query: 60 DAAL 63
          D A 
Sbjct: 60 DIAY 63

Length = 378

>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 25/153 (16%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQ-LELSNIKDLIVVVEGA 59
           M    V+LA G   ++       VPK  L +  RP+L + LE  LE   I +++VVV   
Sbjct: 3   MMVSAVILAAGFGSRM----GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPE 58

Query: 60  DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--- 116
           D                    V  V        ++      L+  D   V   LV D   
Sbjct: 59  DDPY-----FEKLPKLSADKRVEVVKGGATRQESVYNGLQALSKYDSDWV---LVHDAAR 110

Query: 117 --VPPGAVT---AAHRRHDAVVTAMICSVPVSG 144
             + P  +        ++ A + A    +PV+ 
Sbjct: 111 PFLTPKLIKRLIELADKYGAAILA----LPVTD 139

Length = 230

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 12/109 (11%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           VV+LA G   ++      ++PK L P+A +P+L +V++       + + VV  G  A   
Sbjct: 3   VVILAAGKGTRM----KSDLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVY-GHGAEQ- 56

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD 112
               +  A  +R  V      E +GT  A+      L    DVLV+ GD
Sbjct: 57  ----VRKALANR-DVNWVLQAEQLGTGHAVLQALPFLPDDGDVLVLYGD 100

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 14/63 (22%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           + + V+   G    ++P  +K +PK +LP+ ++P++ Y+++++  + IK++++V   + 
Sbjct: 2  TNLKAVIPVAGLGMHMLP-ATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASK 60

Query: 61 AAL 63
           A+
Sbjct: 61 NAV 63

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose [Regulatory functions, Protein interactions]. Length = 297

>gnl|CDD|224979 COG2068, COG2068, Uncharacterized MobA-related protein [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            VVLA G S ++        PK L P+  +P++    E    + +  +IVV     A   
Sbjct: 8   AVVLAAGRSSRM------GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVA--- 58

Query: 65  VGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHLTAKD--VLVVSGDLVSDVPPGA 121
                  A + +L V V   P+   G + +L+A      A+   V+++ GD+     P  
Sbjct: 59  ---EAVEALLAQLGVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDM-----PQV 110

Query: 122 VTAAHRR 128
             A  RR
Sbjct: 111 TPATVRR 117

Length = 199

>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 41/160 (25%)

Query: 5   VVVLAGGTSKKLVPLVSKE---VPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADA 61
           VV+LAGG   +L    S+E    PK ++ +  RP+L ++++        D I+       
Sbjct: 1   VVILAGGLGTRL----SEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFIL------- 49

Query: 62  ALRVGGWISAAY------------VDRLHVEV---ATVPE-------DVG----TAGALR 95
            L   G +   Y            +D     +    +  E       D G    T G L+
Sbjct: 50  CLGYKGHVIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLK 109

Query: 96  AIAHHL-TAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVT 134
            +  +L   +  ++  GD VSDV   A+   HR H  + T
Sbjct: 110 RVRRYLGDDETFMLTYGDGVSDVNINALIEFHRSHGKLAT 149

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
KOG1462	433	consensus Translation initiation factor 2B, gamma	100.0
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	100.0
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	100.0
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	100.0
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PLN02241	436	glucose-1-phosphate adenylyltransferase	100.0
KOG1461	673	consensus Translation initiation factor 2B, epsilo	100.0
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	100.0
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	100.0
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	100.0
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	100.0
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	100.0
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	100.0
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	100.0
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	100.0
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	100.0
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	100.0
PRK10122	297	GalU regulator GalF; Provisional	100.0
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	100.0
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	100.0
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	100.0
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	100.0
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	100.0
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	100.0
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	100.0
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	99.98
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	99.98
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	99.97
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	99.97
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	99.97
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	99.97
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	99.97
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	99.97
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.96
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.96
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.96
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.95
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.95
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.94
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.94
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.94
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.93
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	99.93
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.92
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.9
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.86
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.86
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.85
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.82
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.74
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	99.74
PLN02917	293	CMP-KDO synthetase	99.71
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	99.69
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	99.68
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	99.65
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	99.64
COG4750	231	LicC CTP:phosphocholine cytidylyltransferase invol	99.63
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	99.57
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	99.56
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.56
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	99.56
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	99.53
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	99.51
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	99.5
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.49
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.48
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	99.47
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	99.45
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.45
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	99.45
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	99.42
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	99.42
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	99.39
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.32
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	99.32
COG2068	199	Uncharacterized MobA-related protein [General func	99.31
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	99.3
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	99.25
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	99.23
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	99.17
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	99.17
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	99.13
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	99.04
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	98.94
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	98.87
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	98.82
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	98.72
COG1861	241	SpsF Spore coat polysaccharide biosynthesis protei	98.66
PTZ00339	482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	98.52
cd00897	300	UGPase_euk Eukaryotic UGPase catalyses the synthes	98.1
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	97.94
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	97.93
PF01704	420	UDPGP: UTP--glucose-1-phosphate uridylyltransferas	97.52
COG4284	472	UDP-glucose pyrophosphorylase [Carbohydrate transp	97.42
PLN02435	493	probable UDP-N-acetylglucosamine pyrophosphorylase	97.33
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	97.21
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	96.86
cd06424	315	UGGPase UGGPase catalyzes the synthesis of UDP-Glu	96.74
PLN02830	615	UDP-sugar pyrophosphorylase	96.7
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	96.15
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	93.7
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	93.46
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	93.24
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	92.48
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	92.46
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	92.3
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	92.05
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	91.65
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	91.64
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	91.16
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	91.06
PRK10073	328	putative glycosyl transferase; Provisional	90.86
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	89.81
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	89.63
PRK14583	444	hmsR N-glycosyltransferase; Provisional	88.85
PRK10018	279	putative glycosyl transferase; Provisional	87.68
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	87.64
PRK11204	420	N-glycosyltransferase; Provisional	86.79
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	86.63
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	86.44
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	85.16
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	84.74
KOG2978	238	consensus Dolichol-phosphate mannosyltransferase [	83.77
KOG2388	477	consensus UDP-N-acetylglucosamine pyrophosphorylas	83.73
PTZ00260	333	dolichyl-phosphate beta-glucosyltransferase; Provi	83.42
cd02511	229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	82.23
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	82.21
cd06438	183	EpsO_like EpsO protein participates in the methano	82.2
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	82.19
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	81.64
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	81.64
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	81.0
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	80.6

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.8e-47  Score=343.64  Aligned_cols=295  Identities=32%  Similarity=0.518  Sum_probs=227.9

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |+|||||+|||.||||..+ +...|||||||+|+|||+|+|++|.++|+++|+|++...+ .+.++.++.+.+.-++...
T Consensus         8 ~efqavV~a~~ggt~~p~~-~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e-~~~i~~al~~~~~l~~~~~   85 (433)
T KOG1462|consen    8 SEFQAVVLAGGGGTRMPEV-TSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDE-KLDIESALGSNIDLKKRPD   85 (433)
T ss_pred             HHhhhheeecCCceechhh-hhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHH-HHHHHHHHhcCCccccccc
Confidence            4689999999999999777 9999999999999999999999999999999999998533 3467777765332222211


Q ss_pred             EEEc----CCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019           81 VATV----PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (362)
Q Consensus        81 i~~~----~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (362)
                      ++..    .+..||+++|+.+...+..+||||++||+|++.++..+++.++..++...|++.....    +...+|.+.+
T Consensus        86 ~v~ip~~~~~d~gtadsLr~Iy~kikS~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s----~~~~pgqk~k  161 (433)
T KOG1462|consen   86 YVEIPTDDNSDFGTADSLRYIYSKIKSEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALS----EVPIPGQKGK  161 (433)
T ss_pred             EEEeecccccccCCHHHHhhhhhhhccCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccc----cccccCcccc
Confidence            2221    2358999999999999977799999999999999999999999988877777663221    1112333333


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhh
Q 018019          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD  236 (362)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d  236 (362)
                      .  .+...++.++++++++.+.....+.++++.|++++||+||++++.++|.|+|+|+|++|+++ ++.++....||+.+
T Consensus       162 ~--k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d-~l~~~~sisSfk~~  238 (433)
T KOG1462|consen  162 K--KQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVID-LLSEKESISSFKAD  238 (433)
T ss_pred             c--ccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHH-HHhcCCcceeeccc
Confidence            2  35668899999998888877777889999999999999999999999999999999999996 55777789999999


Q ss_pred             hhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCc-ccccccCCCCCCCCCCceeeEEEEEecCCceEEE
Q 018019          237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS-FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVR  315 (362)
Q Consensus       237 ~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~r  315 (362)
                      |+|+|+++|+++........+              ..|.   +|. ++.+      +...+.++.|||+|..+.++-|.|
T Consensus       239 f~P~lvkkQ~q~~~~~~~~~~--------------~~l~---t~~~~~~d------~~~~~~d~ik~y~~~~p~e~~~~r  295 (433)
T KOG1462|consen  239 FLPYLVKKQFQKNPPLKKNET--------------SILP---TPNLNNPD------GIHSPDDRIKCYAYILPTESLFVR  295 (433)
T ss_pred             ccchhhhhhhhcCCCcccccc--------------cccC---CccccCcc------cccCcccceeeeEEEccCccceEE
Confidence            999999999976433211111              0000   111 1111      111122469999999998889999


Q ss_pred             eCCHHHHHHHhH
Q 018019          316 LNSIQAFMDINR  327 (362)
Q Consensus       316 in~~~~Y~~~n~  327 (362)
                      +||+.+|+++||
T Consensus       296 aNtL~~y~eiN~  307 (433)
T KOG1462|consen  296 ANTLLSYMEINR  307 (433)
T ss_pred             ecchHHHHhhhH
Confidence            999999999995

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=8.2e-40  Score=291.42  Aligned_cols=231  Identities=23%  Similarity=0.432  Sum_probs=189.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      .|+|+||.||.||||+|| |..+|||++||+++|||+|++++|.++|+++|+++++++.  +++..|+...+..++++++
T Consensus         9 ~vkaiILvGG~GTRLrPL-T~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s--~sl~~~~~k~y~~~lgVei   85 (371)
T KOG1322|consen    9 SVKAIILVGGYGTRLRPL-TLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNS--ESLNRHLSKAYGKELGVEI   85 (371)
T ss_pred             ceeEEEEecCCCceeece-eccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCc--HHHHHHHHHHhhhccceEE
Confidence            478999999999999999 9999999999999999999999999999999999999874  4577777665666678877


Q ss_pred             EE--cCCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019           82 AT--VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (362)
Q Consensus        82 ~~--~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (362)
                      ..  +.++.|+++.+..+++++-   +.+|+|++||+++..++.+|++.|+++++++|++++++.               
T Consensus        86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd---------------  150 (371)
T KOG1322|consen   86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD---------------  150 (371)
T ss_pred             EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc---------------
Confidence            65  4556666666666665553   337999999999999999999999999999999998764               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhh
Q 018019          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQD  236 (362)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d  236 (362)
                        ++++||++.+|+++.++..|.     ||+.             ...++.+|+|+|+|++++|+.++. .  -.|+..+
T Consensus       151 --epSkyGvv~~d~~~grV~~F~-----EKPk-------------d~vsnkinaGiYi~~~~vL~ri~~-~--ptSiekE  207 (371)
T KOG1322|consen  151 --EPSKYGVVVIDEDTGRVIRFV-----EKPK-------------DLVSNKINAGIYILNPEVLDRILL-R--PTSIEKE  207 (371)
T ss_pred             --CccccceEEEecCCCceeEeh-----hCch-------------hhhhccccceEEEECHHHHhHhhh-c--ccchhhh
Confidence              378899999999444456776     4543             234678899999999999998863 2  3669999


Q ss_pred             hhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEe
Q 018019          237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL  316 (362)
Q Consensus       237 ~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri  316 (362)
                      ++|.+++.                                                       .+.|||.+  +|||..|
T Consensus       208 ifP~~a~~-------------------------------------------------------~~l~a~~l--~gfWmDI  230 (371)
T KOG1322|consen  208 IFPAMAEE-------------------------------------------------------HQLYAFDL--PGFWMDI  230 (371)
T ss_pred             hhhhhhhc-------------------------------------------------------CceEEEec--Cchhhhc
Confidence            99987643                                                       34589999  8999999


Q ss_pred             CCHHHHHHHhHHHh
Q 018019          317 NSIQAFMDINRDVI  330 (362)
Q Consensus       317 n~~~~Y~~~n~~~l  330 (362)
                      .++++|++.=.-.+
T Consensus       231 Gqpkdf~~g~~~Yl  244 (371)
T KOG1322|consen  231 GQPKDFLTGFSFYL  244 (371)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999943333

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-40  Score=306.76  Aligned_cols=238  Identities=22%  Similarity=0.360  Sum_probs=197.3

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHh---hhcCC-
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA---AYVDR-   76 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~---~~~~~-   76 (362)
                      ++.|+|||||.|+||.|| |..|+||.+||||| +||||+|++|.++|+++|.|++.++.+  ++.+|++.   |.+++ 
T Consensus         5 ~~laiILaGg~G~rL~~L-T~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~--SL~~Hi~~G~~w~l~~~   81 (393)
T COG0448           5 NVLAIILAGGRGSRLSPL-TKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSH--SLNDHIGRGWPWDLDRK   81 (393)
T ss_pred             ceEEEEEcCCCCCccchh-hhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchh--HHHHHhhCCCccccccc
Confidence            467999999999999999 99999999999999 999999999999999999999998864  89999985   43433 


Q ss_pred             -cceEEEEc----C---CCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 018019           77 -LHVEVATV----P---EDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (362)
Q Consensus        77 -~~i~i~~~----~---~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~  145 (362)
                       .++.++..    .   ...||++|+++.+..+.   .+++++++||+|+++|+.++++.|++++|++|+++.+++..  
T Consensus        82 ~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~--  159 (393)
T COG0448          82 NGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPRE--  159 (393)
T ss_pred             cCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChH--
Confidence             24555432    1   23799999999877664   47899999999999999999999999999999999988742  


Q ss_pred             cccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                                   +.++||++.+|+++++ ..+.+++..+.                ....++++|+|+|++++|..++.
T Consensus       160 -------------eas~fGim~~D~~~~i-~~F~eKp~~~~----------------~~~~laSMgiYIf~~~~L~~~L~  209 (393)
T COG0448         160 -------------EASRFGVMNVDENGRI-IEFVEKPADGP----------------PSNSLASMGIYIFNTDLLKELLE  209 (393)
T ss_pred             -------------hhhhcCceEECCCCCE-EeeeeccCcCC----------------cccceeeeeeEEEcHHHHHHHHH
Confidence                         2678899999999986 45664332100                12238999999999999999986


Q ss_pred             cC----cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceee
Q 018019          226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (362)
Q Consensus       226 ~~----~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (362)
                      +.    ....+|.+|+||.++...                                                       .
T Consensus       210 ~~~~~~~~~~DfgkdiIp~~~~~~-------------------------------------------------------~  234 (393)
T COG0448         210 EDAKDPNSSHDFGKDIIPKLLERG-------------------------------------------------------K  234 (393)
T ss_pred             HHhcccCccccchHHHHHHHHhcC-------------------------------------------------------C
Confidence            42    346788899999977442                                                       2


Q ss_pred             EEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 018019          302 CCVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       302 ~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~  331 (362)
                      ++||.+  +|||..|.|+.+||++|||+|+
T Consensus       235 v~AY~f--~gYw~dVgTi~syy~aNmdLl~  262 (393)
T COG0448         235 VYAYEF--SGYWRDVGTIDSYYEANMDLLS  262 (393)
T ss_pred             EEEEec--cchhhhcccHHHHHHhhHHhcC
Confidence            699999  8899999999999999999997

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.3e-38  Score=296.61  Aligned_cols=236  Identities=23%  Similarity=0.455  Sum_probs=194.6

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      .|+|||||||+||||+|| |..+||||+||+|||||+|+|++|..+|+++|+|++++.  .+++.+++.+.......+.+
T Consensus         1 ~mkavILagG~GtRLrPl-T~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~--~~~i~~~~~d~~~~~~~I~y   77 (358)
T COG1208           1 PMKAVILAGGYGTRLRPL-TDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYL--GEQIEEYFGDGEGLGVRITY   77 (358)
T ss_pred             CceEEEEeCCcccccccc-ccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccc--hHHHHHHHhcccccCCceEE
Confidence            379999999999999999 999999999999999999999999999999999999876  46888888763222356777


Q ss_pred             EEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCC
Q 018019           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (362)
                      +.+..+.||+++|+.+.+++..++|++++||.+++.|+..+++.|+++++.+|++.....                 .+.
T Consensus        78 ~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~-----------------~~~  140 (358)
T COG1208          78 VVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL-----------------DPS  140 (358)
T ss_pred             EecCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC-----------------CCC
Confidence            777788999999999999997689999999999999999999999999888888776543                 145


Q ss_pred             cceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhhhhhHH
Q 018019          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYL  241 (362)
Q Consensus       162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d~ip~l  241 (362)
                      .|+++..++++..+..+.+     |+.. .          ...++++++|+|+|++++|+.+ .. ....++..+++|.|
T Consensus       141 ~~Gvv~~~~~~~~v~~f~e-----kp~~-~----------~~~~~~in~Giyi~~~~v~~~i-~~-~~~~~~~~~~~~~l  202 (358)
T COG1208         141 EFGVVETDDGDGRVVEFRE-----KPGP-E----------EPPSNLINAGIYIFDPEVFDYI-EK-GERFDFEEELLPAL  202 (358)
T ss_pred             cCceEEecCCCceEEEEEe-----cCCC-C----------CCCCceEEeEEEEECHHHhhhc-cc-CCcccchhhHHHHH
Confidence            7898888855445567764     3310 0          2356899999999999999734 32 24566777999998


Q ss_pred             HHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHH
Q 018019          242 VRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQA  321 (362)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~  321 (362)
                      ++.+.                                                      .+++|.+  +|||..|.++++
T Consensus       203 ~~~~~------------------------------------------------------~v~~~~~--~g~W~dig~p~d  226 (358)
T COG1208         203 AAKGE------------------------------------------------------DVYGYVF--EGYWLDIGTPED  226 (358)
T ss_pred             HhCCC------------------------------------------------------cEEEEEe--CCeEEeCCCHHH
Confidence            86532                                                      3588888  789999999999


Q ss_pred             HHHHhHHHhh
Q 018019          322 FMDINRDVIG  331 (362)
Q Consensus       322 Y~~~n~~~l~  331 (362)
                      |.++|..+++
T Consensus       227 ~~~a~~~~~~  236 (358)
T COG1208         227 LLEANELLLR  236 (358)
T ss_pred             HHHHHHHHHh
Confidence            9999999996

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=1.4e-36  Score=296.06  Aligned_cols=253  Identities=22%  Similarity=0.352  Sum_probs=197.4

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh-cCCc--
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRL--   77 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~~~--   77 (362)
                      +++|||||||.||||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|++++.  .+.+.+|+.+.+ ....  
T Consensus         3 ~~~AVILAaG~GtRL~PL-T~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~--~~~i~~~l~~~~~~~~~~~   79 (429)
T PRK02862          3 RVLAIILGGGAGTRLYPL-TKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFN--SASLNRHISQTYNFDGFSG   79 (429)
T ss_pred             cEEEEEECCCCCCcchhh-hcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCC--HHHHHHHHhcCcCccccCC
Confidence            368999999999999999 99999999999999 9999999999999999999999975  358888887422 1111  


Q ss_pred             c-eEEEE--c--CC---CCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCc
Q 018019           78 H-VEVAT--V--PE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLS  146 (362)
Q Consensus        78 ~-i~i~~--~--~~---~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~  146 (362)
                      + +.+..  +  .+   ..||+++++.+++++.   .++|+|++||.+++.|+.++++.|++.++++|+++.+.+..   
T Consensus        80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~---  156 (429)
T PRK02862         80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEK---  156 (429)
T ss_pred             CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChh---
Confidence            2 22222  1  11   2799999999998885   26799999999999999999999999999999988654311   


Q ss_pred             ccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCccc--ccccccchHHHhhcCc-eeeecCceeceEEeeCHHHHHHH
Q 018019          147 EAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAEL--EKDTRIRKSILRAVGQ-MDIRADLMDAHMYAFNRSVLQEV  223 (362)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~--ek~~~i~~~~l~~~~~-~~~~~~l~~~giYi~s~~vl~~~  223 (362)
                                  .+..|+++.+|+++++ ..+.++++.  .+.+.++.++|...+. .....+++++|+|+|++++|..+
T Consensus       157 ------------~~~~yG~i~~d~~g~V-~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~  223 (429)
T PRK02862        157 ------------DASGFGLMKTDDDGRI-TEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDL  223 (429)
T ss_pred             ------------hcccceEEEECCCCcE-EEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHH
Confidence                        2557899999987765 566655432  1234566666655442 22345689999999999999877


Q ss_pred             HhcCcccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEE
Q 018019          224 LDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC  303 (362)
Q Consensus       224 ~~~~~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (362)
                      +++..++.++.+|+||++++.                                                       .+++
T Consensus       224 l~~~~~~~~~~~dil~~l~~~-------------------------------------------------------~~v~  248 (429)
T PRK02862        224 LNKNPEYTDFGKEIIPEAIRD-------------------------------------------------------YKVQ  248 (429)
T ss_pred             HHHCCChhhhHHHHHHHHhcc-------------------------------------------------------CcEE
Confidence            766545667888999987522                                                       3468


Q ss_pred             EEEecCCceEEEeCCHHHHHHHhHHHh
Q 018019          304 VYIASNSKYCVRLNSIQAFMDINRDVI  330 (362)
Q Consensus       304 ~~~~~~~~y~~rin~~~~Y~~~n~~~l  330 (362)
                      +|.+  +|||.+++|+.+|+++|++++
T Consensus       249 ~~~~--~g~w~digt~~~y~~an~~l~  273 (429)
T PRK02862        249 SYLF--DGYWEDIGTIEAFYEANLALT  273 (429)
T ss_pred             EEEe--CCEEEeCCCHHHHHHHHHHHH
Confidence            8877  789999999999999999999

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=2.8e-36  Score=292.45  Aligned_cols=245  Identities=22%  Similarity=0.321  Sum_probs=186.3

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHh-hhcCCcce
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA-AYVDRLHV   79 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~-~~~~~~~i   79 (362)
                      +|+|||||||.||||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++.  .+++.+|+.. |...+..+
T Consensus         5 ~~~avILAaG~GtRl~PL-T~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~   81 (407)
T PRK00844          5 KVLAIVLAGGEGKRLMPL-TADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYK--SHSLDRHISQTWRLSGLLG   81 (407)
T ss_pred             ceEEEEECCCCCCccchh-hcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHHhCcCccccCC
Confidence            389999999999999999 99999999999999 9999999999999999999999976  4588999864 32222222


Q ss_pred             EEEEc----C-----CCCCHHHHHHHHHHhcCC---CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcc
Q 018019           80 EVATV----P-----EDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSE  147 (362)
Q Consensus        80 ~i~~~----~-----~~~gt~~al~~~~~~i~~---~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~  147 (362)
                      .++..    .     ...||++|++.+++++.+   ++|+|++||.+++.++.++++.|+++++++|+++...+..    
T Consensus        82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~----  157 (407)
T PRK00844         82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPRE----  157 (407)
T ss_pred             CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchH----
Confidence            23221    1     148999999999998853   3499999999999999999999999999999888754321    


Q ss_pred             cCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc-
Q 018019          148 AGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ-  226 (362)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~-  226 (362)
                                 .+..|+++.+|++|++ ..+.+++......  +         ....+.++++|+|+|++++|..+++. 
T Consensus       158 -----------~~~~~Gvv~~d~~g~v-~~~~eKp~~~~~~--~---------~~~~~~~~~~Giyi~~~~~l~~~l~~~  214 (407)
T PRK00844        158 -----------EASAFGVIEVDPDGRI-RGFLEKPADPPGL--P---------DDPDEALASMGNYVFTTDALVDALRRD  214 (407)
T ss_pred             -----------HcccCCEEEECCCCCE-EEEEECCCCcccc--c---------CCCCCcEEEeEEEEEeHHHHHHHHHHh
Confidence                       2567899999987764 5666432111000  0         01124789999999999998665553 


Q ss_pred             ---CcccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEE
Q 018019          227 ---KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC  303 (362)
Q Consensus       227 ---~~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (362)
                         .....++..|++|.|++++                                                       +++
T Consensus       215 ~~~~~~~~~~~~dii~~l~~~~-------------------------------------------------------~v~  239 (407)
T PRK00844        215 AADEDSSHDMGGDIIPRLVERG-------------------------------------------------------RAY  239 (407)
T ss_pred             hcCCcccccchhhHHHHHhccC-------------------------------------------------------eEE
Confidence               1234567789999988653                                                       234


Q ss_pred             EEEe----------cCCceEEEeCCHHHHHHHhHHHhh
Q 018019          304 VYIA----------SNSKYCVRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       304 ~~~~----------~~~~y~~rin~~~~Y~~~n~~~l~  331 (362)
                      +|.+          ..+|||.+|+++++|+++||++|+
T Consensus       240 ~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~  277 (407)
T PRK00844        240 VYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLS  277 (407)
T ss_pred             EEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhC
Confidence            4433          125899999999999999999996

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=7.6e-36  Score=291.63  Aligned_cols=256  Identities=19%  Similarity=0.325  Sum_probs=192.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh-cC----
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VD----   75 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~----   75 (362)
                      +|+|||||||+|+||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|++++..  +++.+|+++.+ .+    
T Consensus         3 ~~~aIIlA~G~gtRl~Pl-T~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~--~~i~~~l~~~~~~~~~~~   79 (436)
T PLN02241          3 SVAAIILGGGAGTRLFPL-TKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNS--ASLNRHLSRAYNFGNGGN   79 (436)
T ss_pred             ceEEEEEeCCCCCcchhh-hcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCH--HHHHHHHhccCCCCCCcc
Confidence            489999999999999999 99999999999997 99999999999999999999999763  58999997522 11    


Q ss_pred             --CcceEEEE--cC-----CCCCHHHHHHHHHHhcC------CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeee
Q 018019           76 --RLHVEVAT--VP-----EDVGTAGALRAIAHHLT------AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSV  140 (362)
Q Consensus        76 --~~~i~i~~--~~-----~~~gt~~al~~~~~~i~------~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~  140 (362)
                        ...+.+..  +.     .+.||+++++.++.++.      .++|+|++||.+++.|+.++++.|+++++++|+++.+.
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v  159 (436)
T PLN02241         80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPV  159 (436)
T ss_pred             cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEec
Confidence              01133332  21     25899999998876653      36899999999999999999999999999999988765


Q ss_pred             ccCCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCccccc--ccccchHHHhhcC-ceeeecCceeceEEeeCH
Q 018019          141 PVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVG-QMDIRADLMDAHMYAFNR  217 (362)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek--~~~i~~~~l~~~~-~~~~~~~l~~~giYi~s~  217 (362)
                      +..               ++..|+++.+|+++++ ..+.+++....  ..+++.++|...+ .+....+++++|+|+|++
T Consensus       160 ~~~---------------~~~~ygvv~~d~~~~v-~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~  223 (436)
T PLN02241        160 DES---------------RASDFGLMKIDDTGRI-IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKK  223 (436)
T ss_pred             chh---------------hcCcceEEEECCCCCE-EEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEH
Confidence            421               2567899999887764 57765432211  1122322222111 122235799999999999


Q ss_pred             HHHHHHHhcCc-ccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCC
Q 018019          218 SVLQEVLDQKD-KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPV  296 (362)
Q Consensus       218 ~vl~~~~~~~~-~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (362)
                      ++|..++++.. ...++..|++|.+++++                                                   
T Consensus       224 ~~l~~ll~~~~~~~~~~~~dil~~l~~~g---------------------------------------------------  252 (436)
T PLN02241        224 DVLLKLLRWRFPTANDFGSEIIPGAIKEG---------------------------------------------------  252 (436)
T ss_pred             HHHHHHHHhhcccccchhHHHHHHHhhcC---------------------------------------------------
Confidence            99977765432 22355677888876432                                                   


Q ss_pred             CceeeEEEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 018019          297 RRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (362)
Q Consensus       297 ~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~~  332 (362)
                         .++++|.+  +|||.+|+++.+|+++||++|..
T Consensus       253 ---~~v~~~~~--~gyw~dIg~~~~y~~a~~~~l~~  283 (436)
T PLN02241        253 ---YNVQAYLF--DGYWEDIGTIKSFYEANLALTKQ  283 (436)
T ss_pred             ---CeEEEEee--CCEEEECCCHHHHHHHHHHHhcC
Confidence               46788988  78999999999999999999963

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-35  Score=283.73  Aligned_cols=261  Identities=25%  Similarity=0.415  Sum_probs=214.6

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHh--hhcCC-cce
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA--AYVDR-LHV   79 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~--~~~~~-~~i   79 (362)
                      +|||++|..+.+||.|+ |..+|++|||++|.|||+|+|++|..+|+.+|+|+|+.+  +.++.+|++.  |+... +.+
T Consensus        25 LqAIllaDsf~trF~Pl-t~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~--~~qi~e~i~~sew~~~~~~~v  101 (673)
T KOG1461|consen   25 LQAILLADSFETRFRPL-TLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAH--AAQIIEYIEKSEWYLPMSFIV  101 (673)
T ss_pred             eEEEEEeccchhccccc-ccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEeccc--HHHHHHHHhhccccccccceE
Confidence            69999999999999999 999999999999999999999999999999999999855  3589999974  54322 223


Q ss_pred             EEEEcCCCCCHHHHHHHH-HHhcCCCcEEEEeCCcccCCChHHHHHHHHhc-----CCeEEEEEeeeccCCCcccCCCCC
Q 018019           80 EVATVPEDVGTAGALRAI-AHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRH-----DAVVTAMICSVPVSGLSEAGSSGA  153 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~-~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~-----~a~~t~l~~~~~~~~~~~~~~~~~  153 (362)
                      ..+..++....||++|.. .+.+..++|++++||++++.+|.+++++|+++     ++.|||++.+...           
T Consensus       102 ~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st-----------  170 (673)
T KOG1461|consen  102 VTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESST-----------  170 (673)
T ss_pred             EEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEecccc-----------
Confidence            333334568899999998 45566799999999999999999999999653     6789999876421           


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccc
Q 018019          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSL  233 (362)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~  233 (362)
                          +....-.++++|..+.+++++......+....++++++..++.+.++.++.+++|-|||+.++..| .+|++|+ .
T Consensus       171 ----~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF-~dNFDyq-~  244 (673)
T KOG1461|consen  171 ----RETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLF-TDNFDYQ-T  244 (673)
T ss_pred             ----ccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHh-hhcccce-e
Confidence                012344678899988888888642222335688999999999999999999999999999999766 6778999 8


Q ss_pred             hhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceE
Q 018019          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC  313 (362)
Q Consensus       234 ~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  313 (362)
                      +.||+..++..++.                                                   ..+||+|+.+...|+
T Consensus       245 r~DfV~GvL~~dil---------------------------------------------------g~kI~~~~~~~~~yA  273 (673)
T KOG1461|consen  245 RDDFVRGVLVDDIL---------------------------------------------------GYKIHVHVLSSIDYA  273 (673)
T ss_pred             hhhhhhhhhhhhhc---------------------------------------------------CCeEEEEEcChhhhh
Confidence            88888877755442                                                   279999999877799


Q ss_pred             EEeCCHHHHHHHhHHHhhhhc
Q 018019          314 VRLNSIQAFMDINRDVIGEAN  334 (362)
Q Consensus       314 ~rin~~~~Y~~~n~~~l~~~~  334 (362)
                      +||+++++|..+|+|+|++|.
T Consensus       274 ~rv~n~~syd~vSkDiI~RW~  294 (673)
T KOG1461|consen  274 ARVENLRSYDLVSKDIIQRWT  294 (673)
T ss_pred             hhhcccHHHHHHHHHHHHhhc
Confidence            999999999999999998763

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=2.3e-35  Score=287.14  Aligned_cols=245  Identities=20%  Similarity=0.284  Sum_probs=186.0

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcc-hHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhc-CC--c
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRP-VLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR--L   77 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~p-lI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~--~   77 (362)
                      +++|||||||.||||+|| |..+||||+||+|+| ||+|+|++|.++|+++|+|++++.  .+.+.+|+.+.+. .+  .
T Consensus        15 ~~~aVILAaG~GtRl~pL-T~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~--~~~i~~~~~~~~~~~~~~~   91 (425)
T PRK00725         15 DTLALILAGGRGSRLKEL-TDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYK--AHSLIRHIQRGWSFFREEL   91 (425)
T ss_pred             ceEEEEECCCCCCcchhh-hCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCC--HHHHHHHHHhhhcccccCC
Confidence            588999999999999999 999999999999996 999999999999999999999976  3588888875221 11  1


Q ss_pred             c--eEEEE-------cCCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 018019           78 H--VEVAT-------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (362)
Q Consensus        78 ~--i~i~~-------~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~  145 (362)
                      .  +.+..       ++...||++|++.+++++.   +++|+|++||.+++.++.++++.|+++++++|+++.+.+..  
T Consensus        92 ~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~--  169 (425)
T PRK00725         92 GEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPRE--  169 (425)
T ss_pred             CCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchh--
Confidence            1  22221       1224899999999999885   35799999999999999999999999999999988764321  


Q ss_pred             cccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                                   ++..||++.+|+++++ ..+.+++....  ..+         ....+.++++|+|+|++++|..+++
T Consensus       170 -------------~~~~yG~v~~d~~~~V-~~~~EKp~~~~--~~~---------~~~~~~l~n~GIYi~~~~~L~~~L~  224 (425)
T PRK00725        170 -------------EASAFGVMAVDENDRI-TAFVEKPANPP--AMP---------GDPDKSLASMGIYVFNADYLYELLE  224 (425)
T ss_pred             -------------hcccceEEEECCCCCE-EEEEECCCCcc--ccc---------cCccceEEEeeEEEEeHHHHHHHHH
Confidence                         2568899999987764 56664321110  000         0112478999999999999876654


Q ss_pred             cC----cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceee
Q 018019          226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (362)
Q Consensus       226 ~~----~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (362)
                      +.    ....++..|++|.+++++                                                       +
T Consensus       225 ~~~~~~~~~~~~~~dii~~l~~~~-------------------------------------------------------~  249 (425)
T PRK00725        225 EDAEDPNSSHDFGKDIIPKIVEEG-------------------------------------------------------K  249 (425)
T ss_pred             HhhcCCCccchhhHHHHHHHhccC-------------------------------------------------------c
Confidence            31    123456678888887542                                                       3


Q ss_pred             EEEEEecC---------CceEEEeCCHHHHHHHhHHHhh
Q 018019          302 CCVYIASN---------SKYCVRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       302 ~~~~~~~~---------~~y~~rin~~~~Y~~~n~~~l~  331 (362)
                      +++|.+.+         +|||.+|+|+.+|+++||++|.
T Consensus       250 v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~  288 (425)
T PRK00725        250 VYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLAS  288 (425)
T ss_pred             EEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcC
Confidence            46665532         5899999999999999999985

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=2.6e-35  Score=283.83  Aligned_cols=237  Identities=22%  Similarity=0.366  Sum_probs=185.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhh---hcCC-
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAA---YVDR-   76 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~---~~~~-   76 (362)
                      +|+|||||||+||||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++.  .+.+.+|+++.   -.+. 
T Consensus         3 ~m~avILAaG~GtRl~pl-T~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~   79 (380)
T PRK05293          3 EMLAMILAGGQGTRLGKL-TKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQ--PLELNNHIGIGSPWDLDRI   79 (380)
T ss_pred             cEEEEEECCCCCcccchh-hcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCC--HHHHHHHHhCCCcccccCC
Confidence            399999999999999999 99999999999999 9999999999999999999999976  45888888642   1111 


Q ss_pred             -cceEEE--E--cCC---CCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 018019           77 -LHVEVA--T--VPE---DVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (362)
Q Consensus        77 -~~i~i~--~--~~~---~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~  145 (362)
                       .++.+.  .  +.+   ..||+++++.+++++.   .++|+|++||.+++.++.++++.|+++++++|+++...+..  
T Consensus        80 ~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~--  157 (380)
T PRK05293         80 NGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWE--  157 (380)
T ss_pred             CCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchh--
Confidence             123332  2  222   3899999999999885   25799999999999999999999999889988887654321  


Q ss_pred             cccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                                   ++..|+++.+|+++++ ..+.+     |+.             ...+++.++|+|+|++++|..+++
T Consensus       158 -------------~~~~yG~v~~d~~g~V-~~~~e-----Kp~-------------~~~~~~~~~Giyi~~~~~l~~~l~  205 (380)
T PRK05293        158 -------------EASRFGIMNTDENMRI-VEFEE-----KPK-------------NPKSNLASMGIYIFNWKRLKEYLI  205 (380)
T ss_pred             -------------hccccCEEEECCCCcE-EEEEe-----CCC-------------CCCcceeeeEEEEEcHHHHHHHHH
Confidence                         2567899999877764 56653     321             112478899999999999977765


Q ss_pred             cC----cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceee
Q 018019          226 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (362)
Q Consensus       226 ~~----~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (362)
                      +.    ....++..|+++.+++++                                                      .+
T Consensus       206 ~~~~~~~~~~~~~~d~i~~l~~~~------------------------------------------------------~~  231 (380)
T PRK05293        206 EDEKNPNSSHDFGKNVIPLYLEEG------------------------------------------------------EK  231 (380)
T ss_pred             HHhhcCCchhhhHHHHHHHHhhcC------------------------------------------------------Ce
Confidence            32    123455578888877442                                                      35


Q ss_pred             EEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 018019          302 CCVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       302 ~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~  331 (362)
                      +++|..  +|||..++++.+|+++|++++.
T Consensus       232 v~~~~~--~g~w~digt~~~~~~a~~~~l~  259 (380)
T PRK05293        232 LYAYPF--KGYWKDVGTIESLWEANMELLR  259 (380)
T ss_pred             EEEEEe--CCEEEeCCCHHHHHHHHHHHcC
Confidence            688877  7899999999999999999986

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=100.00  E-value=2.9e-34  Score=262.06  Aligned_cols=231  Identities=24%  Similarity=0.379  Sum_probs=179.5

Q ss_pred             EEEEeCC--CCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHh-CCCCeEEEEccCcchHHHHHHHHHhhhc-CCcceE
Q 018019            5 VVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYV-DRLHVE   80 (362)
Q Consensus         5 avIlA~G--~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~~~i~   80 (362)
                      |||||||  +||||+|+ |..+||||+||+|||||+|+|++|.+ +|+++|+|++++.  .+.+.+|+++... ....+.
T Consensus         1 ~iIla~G~~~GtRl~pl-t~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~--~~~i~~~l~~~~~~~~~~i~   77 (257)
T cd06428           1 AVILVGGPQKGTRFRPL-SLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYP--ESVFSDFISDAQQEFNVPIR   77 (257)
T ss_pred             CEEEccCCCCCcccCCc-cCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCC--HHHHHHHHHhcccccCceEE
Confidence            6999999  89999999 99999999999999999999999999 6999999999875  3578888875311 112344


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCC
Q 018019           81 VATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (362)
                      ++.+.+..||+++++.+.+++.   .++|+|++||++++.++..+++.|+++++++|+++.+.+..              
T Consensus        78 ~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~--------------  143 (257)
T cd06428          78 YLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASRE--------------  143 (257)
T ss_pred             EecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcccc--------------
Confidence            4445567999999999998874   36799999999999999999999999999999888764311              


Q ss_pred             CCCCcceEEEEc-CCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcC---------
Q 018019          158 KKPGRYNIIGMD-PTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK---------  227 (362)
Q Consensus       158 ~~~~~~~~v~~d-~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~---------  227 (362)
                       .+..|+++.+| ++++ +..+.+     |+.             ...++++++|+|+|++++|..+.+..         
T Consensus       144 -~~~~yg~v~~d~~~g~-v~~~~E-----kp~-------------~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~  203 (257)
T cd06428         144 -QASNYGCIVEDPSTGE-VLHYVE-----KPE-------------TFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQL  203 (257)
T ss_pred             -ccccccEEEEeCCCCe-EEEEEe-----CCC-------------CcccceEEEEEEEECHHHHHHHhhhcccccccccc
Confidence             25678999988 5565 467764     321             12347899999999999996654311         


Q ss_pred             ---------cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCc
Q 018019          228 ---------DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR  298 (362)
Q Consensus       228 ---------~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (362)
                               ..+.++..|+++.++++                                                      
T Consensus       204 ~~~~~~~~~~~~~~~~~d~~~~l~~~------------------------------------------------------  229 (257)
T cd06428         204 GDDNNREGRAEVIRLEQDVLTPLAGS------------------------------------------------------  229 (257)
T ss_pred             ccccccccccceeeehhhhhhHHhcc------------------------------------------------------
Confidence                     12234445677766532                                                      


Q ss_pred             eeeEEEEEecCCceEEEeCCHHHHHHHhHHH
Q 018019          299 THKCCVYIASNSKYCVRLNSIQAFMDINRDV  329 (362)
Q Consensus       299 ~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~  329 (362)
                       .++++|++  +|||..|.|+.+|+++|+.+
T Consensus       230 -~~v~~~~~--~g~w~dig~~~~~~~a~~~~  257 (257)
T cd06428         230 -GKLYVYKT--DDFWSQIKTAGSAIYANRLY  257 (257)
T ss_pred             -CCEEEecC--CCeeecCCCHHHHHhHhhcC
Confidence             35688888  89999999999999999864

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=100.00  E-value=6.4e-34  Score=256.09  Aligned_cols=228  Identities=21%  Similarity=0.401  Sum_probs=184.8

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |++||||||.|+||+|+ |.++||+|+|++|+|||+|++++|.++|+++|+|++++..  +.+.+|+..+ ..+.++.++
T Consensus         1 m~~iIlAaG~g~R~~~l-t~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~--~~~~~~l~~~-~~~~~~~i~   76 (233)
T cd06425           1 MKALILVGGYGTRLRPL-TLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRP--EDMVPFLKEY-EKKLGIKIT   76 (233)
T ss_pred             CcEEEecCCCccccCcc-ccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCH--HHHHHHHhcc-cccCCeEEE
Confidence            68999999999999999 9999999999999999999999999999999999999763  4788888754 223455555


Q ss_pred             E--cCCCCCHHHHHHHHHHhcCC--CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019           83 T--VPEDVGTAGALRAIAHHLTA--KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (362)
Q Consensus        83 ~--~~~~~gt~~al~~~~~~i~~--~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (362)
                      .  +.+..|++++++.+.+++..  ++++|++||++++.++.++++.|+++++++|+++.+.+                 
T Consensus        77 ~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  139 (233)
T cd06425          77 FSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE-----------------  139 (233)
T ss_pred             eccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC-----------------
Confidence            4  45578999999999998864  67999999999999999999999999999999887542                 


Q ss_pred             CCCcceEEEEcC-CCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhhh
Q 018019          159 KPGRYNIIGMDP-TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDV  237 (362)
Q Consensus       159 ~~~~~~~v~~d~-~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d~  237 (362)
                      .+..|+++.+|+ +++ +..+.+     |+.             ...++++++|+|+|++++|..+.+   ...++..|+
T Consensus       140 ~~~~~g~v~~d~~~~~-v~~~~e-----kp~-------------~~~~~~~~~Giyi~~~~~l~~l~~---~~~~~~~~~  197 (233)
T cd06425         140 DPSKYGVVVHDENTGR-IERFVE-----KPK-------------VFVGNKINAGIYILNPSVLDRIPL---RPTSIEKEI  197 (233)
T ss_pred             CccccCeEEEcCCCCE-EEEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHHhccc---Ccccchhhh
Confidence            145789999987 565 456653     321             112578999999999999976533   234566788


Q ss_pred             hhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeC
Q 018019          238 LPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLN  317 (362)
Q Consensus       238 ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin  317 (362)
                      ++.++++                                                       .++++|.+  +|||..|.
T Consensus       198 ~~~l~~~-------------------------------------------------------~~v~~~~~--~g~w~dig  220 (233)
T cd06425         198 FPKMASE-------------------------------------------------------GQLYAYEL--PGFWMDIG  220 (233)
T ss_pred             HHHHHhc-------------------------------------------------------CCEEEEee--CCEEEcCC
Confidence            9988753                                                       24688888  78999999


Q ss_pred             CHHHHHHHhHHHh
Q 018019          318 SIQAFMDINRDVI  330 (362)
Q Consensus       318 ~~~~Y~~~n~~~l  330 (362)
                      |+.+|+++|+.+|
T Consensus       221 t~~~~~~a~~~~l  233 (233)
T cd06425         221 QPKDFLKGMSLYL  233 (233)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998765

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=100.00  E-value=1.4e-34  Score=256.83  Aligned_cols=211  Identities=39%  Similarity=0.653  Sum_probs=171.9

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh-cCCcceE-
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-VDRLHVE-   80 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~~~~~i~-   80 (362)
                      |+|||||||.|+||+|+ |...||+|+|++|+|||+|+++++.++|+++|+|++++.. .+.+++++.... ..+.... 
T Consensus         1 ~~aVILAgG~g~R~~pl-t~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~-~~~i~~~l~~~~~~~~~~~~~   78 (214)
T cd04198           1 FQAVILAGGGGSRLYPL-TDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEE-QAEISTYLRSFPLNLKQKLDE   78 (214)
T ss_pred             CEEEEEeCCCCCcCCcc-ccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHH-HHHHHHHHHhcccccCcceeE
Confidence            68999999999999999 9999999999999999999999999999999999998543 245677776431 1111222 


Q ss_pred             -EEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019           81 -VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (362)
Q Consensus        81 -i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (362)
                       +.......|++++++.+.+.+ .++|+|++||++++.++..+++.|+++++.+|+++.+....+..    .+++++.+.
T Consensus        79 ~~~~~~~~~gt~~al~~~~~~i-~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~----~~~~~~~~~  153 (214)
T cd04198          79 VTIVLDEDMGTADSLRHIRKKI-KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQ----KGGKGKSKK  153 (214)
T ss_pred             EEecCCCCcChHHHHHHHHhhc-CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccc----cCCcccccC
Confidence             222355799999999999887 57899999999999999999999999999999998875532111    111223344


Q ss_pred             CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHH
Q 018019          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL  220 (362)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl  220 (362)
                      ...+.++++|+++++++++.+..+.++...++++++++||++.+++++.|+|||+|++|+|
T Consensus       154 ~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~  214 (214)
T cd04198         154 ADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL  214 (214)
T ss_pred             CCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence            5678899999988888898876677778889999999999999999999999999999975

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=100.00  E-value=3.2e-34  Score=260.21  Aligned_cols=236  Identities=28%  Similarity=0.557  Sum_probs=183.5

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      +|||||||+||||+|+ |..+||||+|++|+ |||+|+|++|.++|++++++++.... .+.+.+++++.......+.++
T Consensus         1 kavIla~G~GtRl~pl-t~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~-~~~i~~~~~~~~~~~~~i~~i   78 (248)
T PF00483_consen    1 KAVILAGGKGTRLRPL-TDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYK-EEQIEEHLGSGYKFGVKIEYI   78 (248)
T ss_dssp             EEEEEEESCCGGGTTT-TTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTT-HHHHHHHHTTSGGGTEEEEEE
T ss_pred             CEEEECCCCCccCchh-hhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecc-cccccccccccccccccceee
Confidence            6999999999999999 99999999999999 99999999999999999666655332 357888887642112347777


Q ss_pred             EcCCCCCHHHHHHHHHHhcCCCc----EEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019           83 TVPEDVGTAGALRAIAHHLTAKD----VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~----~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (362)
                      .++...||+++|+.+.+.+..++    |+|++||++++.++.++++.|+++++++++++...+..               
T Consensus        79 ~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------  143 (248)
T PF00483_consen   79 VQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE---------------  143 (248)
T ss_dssp             EESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS---------------
T ss_pred             ecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhcccccccccccccccc---------------
Confidence            78888999999999999887554    99999999999999999999999988543333333211               


Q ss_pred             CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeee-cCceeceEEeeCHHHHHHHHh---cCcccccch
Q 018019          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIR-ADLMDAHMYAFNRSVLQEVLD---QKDKFQSLK  234 (362)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~-~~l~~~giYi~s~~vl~~~~~---~~~~~~s~~  234 (362)
                      .++.||++.+|+++++ ..+.+     |+-             ... +.++++|+|+|++++|..+++   +......+.
T Consensus       144 ~~~~~g~v~~d~~~~V-~~~~E-----KP~-------------~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l  204 (248)
T PF00483_consen  144 DPSRYGVVEVDEDGRV-IRIVE-----KPD-------------NPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFL  204 (248)
T ss_dssp             GGGGSEEEEEETTSEE-EEEEE-----SCS-------------SHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHH
T ss_pred             ccccceeeeeccceeE-EEEec-----cCc-------------ccccceeccCceEEEcchHHHHHhhhhhccchhhhHH
Confidence            2678999999988865 56664     432             111 579999999999999987743   333344556


Q ss_pred             hhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCc--e
Q 018019          235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK--Y  312 (362)
Q Consensus       235 ~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--y  312 (362)
                      .|+++.++++.                                                      ....+|..  +|  |
T Consensus       205 ~d~i~~~~~~~------------------------------------------------------~~~~~~~~--~~~~~  228 (248)
T PF00483_consen  205 TDAIPKLLEQG------------------------------------------------------KKVYAFIF--EGNAY  228 (248)
T ss_dssp             HHHHHHHHHTT------------------------------------------------------CEEEEEEH--SSEE-
T ss_pred             HHHHHHHHHcC------------------------------------------------------CceEEEEe--cCCeE
Confidence            78888877653                                                      23466666  55  8


Q ss_pred             EEEeCCHHHHHHHhHHHhh
Q 018019          313 CVRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       313 ~~rin~~~~Y~~~n~~~l~  331 (362)
                      |..|.|+.+|+++|+++++
T Consensus       229 w~dig~~~~~~~a~~~~~~  247 (248)
T PF00483_consen  229 WIDIGTPEDYLEANMDLLN  247 (248)
T ss_dssp             EEETSSHHHHHHHHHHHHS
T ss_pred             EEECCCHHHHHHHHHHHhc
Confidence            9999999999999999985

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=100.00  E-value=2.3e-33  Score=259.52  Aligned_cols=234  Identities=15%  Similarity=0.319  Sum_probs=178.2

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh--------
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------   73 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~--------   73 (362)
                      +|+|||||||.||||+|+ |..+||||+||+|||||+|+|++|.++|+++|+|++++.  .+.+.+|+...+        
T Consensus         3 ~mkavILAaG~GTRL~Pl-T~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~--~~~i~~~~~~~~~~~~~~~~   79 (297)
T TIGR01105         3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ   79 (297)
T ss_pred             ceEEEEECCCCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCC--hHHHHHHHhchHHHHHHHHH
Confidence            589999999999999999 999999999999999999999999999999999999975  357888875321        


Q ss_pred             --------------cCCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccC--------CChHHHHHHHHhcCC
Q 018019           74 --------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA  131 (362)
Q Consensus        74 --------------~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--------~~l~~~l~~h~~~~a  131 (362)
                                    .....+.++.++++.|||+|++.+.+++.+++|+|++||.+++        .++.++++.|.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~  159 (297)
T TIGR01105        80 RVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGR  159 (297)
T ss_pred             hcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCC
Confidence                          0012356677788899999999999999767899999998876        589999999987777


Q ss_pred             eEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEc----CCCcE--EEEeecCcccccccccchHHHhhcCceeeec
Q 018019          132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQF--LLHIATGAELEKDTRIRKSILRAVGQMDIRA  205 (362)
Q Consensus       132 ~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~~--l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~  205 (362)
                      .++++.. .+ .               ++.+||++.++    ++|++  +..+.     ||+....          ...+
T Consensus       160 ~~~~~~~-~~-~---------------~~~~yGvv~~~~~~d~~g~v~~I~~~~-----EKP~~~~----------~~~s  207 (297)
T TIGR01105       160 SQVLAKR-MP-G---------------DLSEYSVIQTKEPLDREGKVSRIVEFI-----EKPDQPQ----------TLDS  207 (297)
T ss_pred             cEEEEEE-cC-C---------------CCccceEEEecccccCCCCeeeEeEEE-----ECCCCcc----------cCCc
Confidence            6644432 21 1               25689999984    44543  34554     3432100          1246


Q ss_pred             CceeceEEeeCHHHHHHHHhcCcc----cccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCc
Q 018019          206 DLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS  281 (362)
Q Consensus       206 ~l~~~giYi~s~~vl~~~~~~~~~----~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (362)
                      +++++|+|+|++++|..+ +....    -.++ .|+++.|+++                                     
T Consensus       208 ~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~~l-td~i~~l~~~-------------------------------------  248 (297)
T TIGR01105       208 DLMAVGRYVLSADIWAEL-ERTEPGAWGRIQL-TDAIAELAKK-------------------------------------  248 (297)
T ss_pred             CEEEEEEEEECHHHHHHH-hcCCCCCCCeeeH-HHHHHHHHhc-------------------------------------
Confidence            899999999999999755 43211    0112 2777777642                                     


Q ss_pred             ccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHH
Q 018019          282 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  329 (362)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~  329 (362)
                                        -++++|.+  +|+|.-|.++.+|.++|.++
T Consensus       249 ------------------~~v~~~~~--~g~w~DiG~p~~~~~a~~~~  276 (297)
T TIGR01105       249 ------------------QSVDAMLM--TGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             ------------------CCEEEEEe--ccEEECCCCHHHHHHHHHHH
Confidence                              24688888  78999999999999999886

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.1e-33  Score=245.15  Aligned_cols=234  Identities=22%  Similarity=0.376  Sum_probs=187.4

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |+|||||||.||||+|+ |...||+|+||.+||||+|+|+.|..+||++|.|++++++. ..+.+++.+-..-...+++.
T Consensus         1 mKgiILAgG~GTRL~Pl-T~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~-~~~~~llGdgs~~gv~itY~   78 (286)
T COG1209           1 MKGVILAGGSGTRLRPL-TRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDK-PTFKELLGDGSDFGVDITYA   78 (286)
T ss_pred             CCcEEecCcCccccccc-cccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCch-hhhhhhhcCccccCcceEEE
Confidence            68999999999999999 99999999999999999999999999999999999997653 46666665411012457778


Q ss_pred             EcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCc
Q 018019           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (362)
                      .|+++.|-|+|+..+.+++.+++|+++.||.++..++.++++.+.+.+++++++..++.                 +|++
T Consensus        79 ~Q~~p~GlA~Av~~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~-----------------dP~r  141 (286)
T COG1209          79 VQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD-----------------DPSR  141 (286)
T ss_pred             ecCCCCcHHHHHHHHHhhcCCCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC-----------------Cccc
Confidence            89999999999999999998899999999977766999999999988889999988865                 3889


Q ss_pred             ceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcC-cc-cccch-hhhhh
Q 018019          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-DK-FQSLK-QDVLP  239 (362)
Q Consensus       163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~-~~-~~s~~-~d~ip  239 (362)
                      ||++.+|++++ +..+.     |||.             .+.|+|+-+|+|+|++.+++.+ +.- +. -..++ .|.+.
T Consensus       142 fGV~e~d~~~~-v~~l~-----EKP~-------------~P~SNlAvtGlY~~d~~Vf~~~-~~ikPS~RGElEITd~i~  201 (286)
T COG1209         142 YGVVEFDEDGK-VIGLE-----EKPK-------------EPKSNLAVTGLYFYDPSVFEAI-KQIKPSARGELEITDAID  201 (286)
T ss_pred             ceEEEEcCCCc-EEEeE-----ECCC-------------CCCCceeEEEEEEeChHHHHHH-HcCCCCCCCceEehHHHH
Confidence            99999999885 46776     4554             4568999999999999999644 432 21 11111 35555


Q ss_pred             HHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCH
Q 018019          240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI  319 (362)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~  319 (362)
                      +++++.                                                      ...++...  .|+|..+.+.
T Consensus       202 ~~i~~G------------------------------------------------------~~~~~~~~--~G~WlDtGt~  225 (286)
T COG1209         202 LYIEKG------------------------------------------------------YLVVAILI--RGWWLDTGTP  225 (286)
T ss_pred             HHHHcC------------------------------------------------------cEEEEEEc--cceEEecCCh
Confidence            555432                                                      22244444  6799999999


Q ss_pred             HHHHHHhHHHhh
Q 018019          320 QAFMDINRDVIG  331 (362)
Q Consensus       320 ~~Y~~~n~~~l~  331 (362)
                      .+|.++|+-++.
T Consensus       226 ~slleA~~~i~~  237 (286)
T COG1209         226 ESLLEANNFVRT  237 (286)
T ss_pred             hhHHHHHHHHHH
Confidence            999999998886

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=1.4e-33  Score=270.06  Aligned_cols=241  Identities=22%  Similarity=0.356  Sum_probs=181.2

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhc-CC---cce
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DR---LHV   79 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~---~~i   79 (362)
                      |||||||.||||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|++++..  +++.+|+.+.+. .+   ..+
T Consensus         1 aiILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~   77 (361)
T TIGR02091         1 AMVLAGGRGSRLSPL-TKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKS--HSLNRHIQRGWDFDGFIDGFV   77 (361)
T ss_pred             CEEeCCCCCCccchh-hhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccCh--HHHHHHHHhccCccCccCCCE
Confidence            699999999999999 99999999999999 89999999999999999999999763  478888874221 11   123


Q ss_pred             EEEEc-------CCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccC
Q 018019           80 EVATV-------PEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAG  149 (362)
Q Consensus        80 ~i~~~-------~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~  149 (362)
                      ++...       +...||+++++.+...+.   .++|++++||++++.++.++++.|+++++++|+++...+..      
T Consensus        78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~------  151 (361)
T TIGR02091        78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRK------  151 (361)
T ss_pred             EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChH------
Confidence            33211       124799999999988774   36799999999999999999999998888888887654311      


Q ss_pred             CCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcC--
Q 018019          150 SSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK--  227 (362)
Q Consensus       150 ~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~--  227 (362)
                               ++..|+++.+|+++++ ..+.+     |+.... +. ...    ....++++|+|+|++++|..+++..  
T Consensus       152 ---------~~~~~g~v~~d~~~~v-~~~~e-----kp~~~~-~~-~~~----~~~~~~~~Giyi~~~~~l~~~l~~~~~  210 (361)
T TIGR02091       152 ---------EASRFGVMQVDEDGRI-VDFEE-----KPANPP-SI-PGM----PDFALASMGIYIFDKDVLKELLEEDAD  210 (361)
T ss_pred             ---------hcccccEEEECCCCCE-EEEEE-----CCCCcc-cc-ccc----ccccEEeeeEEEEcHHHHHHHHHHHhh
Confidence                     2567899999887764 56653     321100 00 000    0113789999999999986665531  


Q ss_pred             --cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEE
Q 018019          228 --DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVY  305 (362)
Q Consensus       228 --~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (362)
                        ....++..|+++.|++++                                                       +|++|
T Consensus       211 ~~~~~~~~~~d~l~~l~~~~-------------------------------------------------------~v~~~  235 (361)
T TIGR02091       211 DPESSHDFGKDIIPRALEEG-------------------------------------------------------SVQAY  235 (361)
T ss_pred             cCCcccccHHHHHHHHhhcC-------------------------------------------------------ceEEE
Confidence              123455678888877432                                                       46888


Q ss_pred             EecCCceEEEeCCHHHHHHHhHHHhhh
Q 018019          306 IASNSKYCVRLNSIQAFMDINRDVIGE  332 (362)
Q Consensus       306 ~~~~~~y~~rin~~~~Y~~~n~~~l~~  332 (362)
                      .+  ++||..|+|+.+|+++|+++|..
T Consensus       236 ~~--~~~w~digt~~~~~~a~~~~l~~  260 (361)
T TIGR02091       236 LF--SGYWRDVGTIDSFWEANMDLVSV  260 (361)
T ss_pred             ee--CCEEEECCCHHHHHHHHHHHhCC
Confidence            88  68999999999999999999973

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=100.00  E-value=2.9e-33  Score=249.08  Aligned_cols=203  Identities=27%  Similarity=0.454  Sum_probs=161.5

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCC-----c
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDR-----L   77 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~-----~   77 (362)
                      ++|||+|||.|+||+|| |..+||||+||+|+|||+|+|++|.++|+++|+|++++.  .+.+.+|+++.....     .
T Consensus         1 ~~aiIla~G~g~Rl~pl-t~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~--~~~i~~~l~~~~~~~~~~~~~   77 (217)
T cd04197           1 LQAVVLADSFNRRFRPL-TKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSH--SDQIKEYIEKSKWSKPKSSLM   77 (217)
T ss_pred             CeEEEEcCCCccccccc-ccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCC--HHHHHHHHhhccccccccCcc
Confidence            68999999999999999 999999999999999999999999999999999999965  358999998632111     2


Q ss_pred             ceEEEEcCCCCCHHHHHHHH--HHhcCCCcEEEEeCCcccCCChHHHHHHHHh-----cCCeEEEEEeeeccCCCcccCC
Q 018019           78 HVEVATVPEDVGTAGALRAI--AHHLTAKDVLVVSGDLVSDVPPGAVTAAHRR-----HDAVVTAMICSVPVSGLSEAGS  150 (362)
Q Consensus        78 ~i~i~~~~~~~gt~~al~~~--~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~-----~~a~~t~l~~~~~~~~~~~~~~  150 (362)
                      .+.++.+++..|++++++..  ...+ .++|++++||++++.++.++++.|++     +++++|+++.+.+..+      
T Consensus        78 ~i~~~~~~~~~~~~~al~~~~~~~~~-~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~------  150 (217)
T cd04197          78 IVIIIMSEDCRSLGDALRDLDAKGLI-RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPH------  150 (217)
T ss_pred             eEEEEeCCCcCccchHHHHHhhcccc-CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCcc------
Confidence            35555556678899998765  3334 57899999999999999999999987     4889999887654211      


Q ss_pred             CCCccCCCCCCcceEEEEcCCCcEEEEeecCccccc--ccccchHHHhhcCceeeecCceeceEEeeCHHHH
Q 018019          151 SGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEK--DTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL  220 (362)
Q Consensus       151 ~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek--~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl  220 (362)
                           +.+....++++.+|+++.+++.+.+++...+  ...++++++.+++.+.++++++|+|+|+|++++|
T Consensus       151 -----~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl  217 (217)
T cd04197         151 -----RTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL  217 (217)
T ss_pred             -----ccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence                 0011234678888877334568877654322  3468999999999999999999999999999975

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=100.00  E-value=2.9e-32  Score=260.11  Aligned_cols=233  Identities=20%  Similarity=0.316  Sum_probs=180.9

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (362)
Q Consensus         4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~   83 (362)
                      +|||||||.|+||+|+ |..+||||+||+|+|||+|+|++|.++|+++|+|++++.. .+.+.+++.+.......+.++.
T Consensus         1 kaiIlAaG~gtRl~pl-t~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~i~~~~~~~~~~~~~~~~~~   78 (353)
T TIGR01208         1 KALILAAGKGTRLRPL-TFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVT-GEEIKEIVGEGERFGAKITYIV   78 (353)
T ss_pred             CEEEECCcCcCccCcc-ccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCC-HHHHHHHHhcccccCceEEEEE
Confidence            5899999999999999 9999999999999999999999999999999999998732 3588888864211112344555


Q ss_pred             cCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcc
Q 018019           84 VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRY  163 (362)
Q Consensus        84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (362)
                      +....|++++++.+++++.+++|++++||.+++.++.++++.|+++++++|+++.+..                 ++..|
T Consensus        79 ~~~~~G~~~al~~a~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~-----------------~~~~~  141 (353)
T TIGR01208        79 QGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR-----------------DPTAF  141 (353)
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC-----------------ChhhC
Confidence            5667999999999999887678999999999999999999999999999998876532                 24568


Q ss_pred             eEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc----ccccchhhhhh
Q 018019          164 NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLP  239 (362)
Q Consensus       164 ~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~----~~~s~~~d~ip  239 (362)
                      +++.++++++ +..+.+     |+.             ...+++.++|+|+|++.+++.+ ++..    +..+ -.|+++
T Consensus       142 g~~~~~~~~~-v~~~~e-----kp~-------------~~~~~~~~~Giy~~~~~l~~~l-~~~~~~~~~e~~-l~d~l~  200 (353)
T TIGR01208       142 GVAVLEDGKR-ILKLVE-----KPK-------------EPPSNLAVVGLYMFRPLIFEAI-KNIKPSWRGELE-ITDAIQ  200 (353)
T ss_pred             eEEEEcCCCc-EEEEEE-----CCC-------------CCCccceEEEEEEECHHHHHHH-HhcCCCCCCcEE-HHHHHH
Confidence            8888865444 456653     321             1124788999999999877655 3211    1111 246666


Q ss_pred             HHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCH
Q 018019          240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI  319 (362)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~  319 (362)
                      .|++++                                                      .++++|.+  +|||..|+|+
T Consensus       201 ~l~~~g------------------------------------------------------~~v~~~~~--~g~w~digt~  224 (353)
T TIGR01208       201 WLIEKG------------------------------------------------------YKVGGSKV--TGWWKDTGKP  224 (353)
T ss_pred             HHHHcC------------------------------------------------------CeEEEEEe--CcEEEeCCCH
Confidence            665432                                                      45788888  7899999999


Q ss_pred             HHHHHHhHHHhhh
Q 018019          320 QAFMDINRDVIGE  332 (362)
Q Consensus       320 ~~Y~~~n~~~l~~  332 (362)
                      .+|+++|+.+|+.
T Consensus       225 ~dl~~a~~~ll~~  237 (353)
T TIGR01208       225 EDLLDANRLILDE  237 (353)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999974

Alternate name: dTDP-D-glucose synthase

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=100.00  E-value=1.7e-33  Score=270.11  Aligned_cols=237  Identities=16%  Similarity=0.269  Sum_probs=172.7

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      +|+|||||||+|+||+|| |..+||||+||+|| |||+|+|++|.++|+++|+|++++.. .+++++|+.+..  .+++.
T Consensus         2 ~~~avila~g~gtRL~PL-T~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~-~~~I~~~l~~~~--~~~~~   77 (369)
T TIGR02092         2 KMSAIINLTESSKNLSPL-TKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE-RQSLFDHLGSGR--EWDLH   77 (369)
T ss_pred             cEEEEEECCCCCcccccc-ccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCc-HHHHHHHHhCCC--CCCcc
Confidence            589999999999999999 99999999999999 99999999999999999999999753 137889886411  11211


Q ss_pred             --------EEEcCC-CC--CHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCc
Q 018019           81 --------VATVPE-DV--GTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLS  146 (362)
Q Consensus        81 --------i~~~~~-~~--gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~  146 (362)
                              ++.++. ..  |++++++.+++++.   .++|+|++||++++.++.++++.|+++++++|+++.+.+..   
T Consensus        78 ~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~---  154 (369)
T TIGR02092        78 RKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPA---  154 (369)
T ss_pred             cccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHH---
Confidence                    223333 22  56667888888774   36799999999999999999999999999999988764310   


Q ss_pred             ccCCCCCccCCCCCCcc-eEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          147 EAGSSGAKDKTKKPGRY-NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       147 ~~~~~~~~~~~~~~~~~-~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                                  .+..| +++..+++++ +..+..    +++.              .....+++|+|+|++++|..+++
T Consensus       155 ------------~~~~~g~vv~~~~~g~-v~~~~~----~~~~--------------~~~~~~~~Giyi~~~~~l~~~l~  203 (369)
T TIGR02092       155 ------------DASEYDTILRFDESGK-VKSIGQ----NLNP--------------EEEENISLDIYIVSTDLLIELLY  203 (369)
T ss_pred             ------------HccccCcEEEEcCCCC-EEeccc----cCCC--------------CCcceeeeeEEEEEHHHHHHHHH
Confidence                        13455 4556776664 344421    1110              01245689999999998866654


Q ss_pred             cCc--ccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEE
Q 018019          226 QKD--KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC  303 (362)
Q Consensus       226 ~~~--~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (362)
                      +..  .....-.|+++.+++.                                                       .+++
T Consensus       204 ~~~~~~~~~~~~d~i~~~~~~-------------------------------------------------------~~v~  228 (369)
T TIGR02092       204 ECIQRGKLTSLEELIRENLKE-------------------------------------------------------LNIN  228 (369)
T ss_pred             HHhhcCccccHHHHHHHHhcc-------------------------------------------------------CcEE
Confidence            321  1112233556655421                                                       2458


Q ss_pred             EEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 018019          304 VYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (362)
Q Consensus       304 ~~~~~~~~y~~rin~~~~Y~~~n~~~l~~~  333 (362)
                      +|..  +|||..|+|+.+|.++|+++|+.+
T Consensus       229 ~~~~--~g~w~dIgt~~~l~~a~~~~l~~~  256 (369)
T TIGR02092       229 AYEY--TGYLANINSVKSYYKANMDLLDPQ  256 (369)
T ss_pred             EEec--CCceeEcCCHHHHHHHHHHHhCCc
Confidence            8877  789999999999999999999754

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK10122 GalU regulator GalF; Provisional

Probab=100.00  E-value=8.8e-32  Score=249.48  Aligned_cols=237  Identities=15%  Similarity=0.281  Sum_probs=178.9

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHh-hhc------
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISA-AYV------   74 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~-~~~------   74 (362)
                      +|+|||+|||.||||+|+ |..+||||+||+|||||+|++++|.++|+++|+|++++.  .+.+.+|+.. |.+      
T Consensus         3 ~mkavIlAaG~GtRl~Pl-T~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~--~~~i~~~~~~~~~l~~~~~~   79 (297)
T PRK10122          3 NLKAVIPVAGLGMHMLPA-TKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHAS--KNAVENHFDTSYELESLLEQ   79 (297)
T ss_pred             ceEEEEECCcCCcccCcc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCC--hHHHHHHHhcchhHHHHHhh
Confidence            489999999999999999 999999999999999999999999999999999999875  3578888853 110      


Q ss_pred             ---------------CCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccC--------CChHHHHHHHHhcCC
Q 018019           75 ---------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD--------VPPGAVTAAHRRHDA  131 (362)
Q Consensus        75 ---------------~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--------~~l~~~l~~h~~~~a  131 (362)
                                     ....+.++.++++.||++|++.+++++.+++|+|+.||.+++        .|+.++++.|.++++
T Consensus        80 ~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~  159 (297)
T PRK10122         80 RVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGR  159 (297)
T ss_pred             cchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHhCC
Confidence                           012356677778899999999999999667899999998765        589999999988887


Q ss_pred             eEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEc----CCCc--EEEEeecCcccccccccchHHHhhcCceeeec
Q 018019          132 VVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQ--FLLHIATGAELEKDTRIRKSILRAVGQMDIRA  205 (362)
Q Consensus       132 ~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~--~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~  205 (362)
                      +++++. ... .               .+..||++.+|    +++.  .+..+.+     |+....          ...+
T Consensus       160 ~~~~~~-~~~-~---------------~~~~yGvv~~d~~~~~~g~v~~I~~~~E-----Kp~~~~----------~~~s  207 (297)
T PRK10122        160 SQVLAK-RMP-G---------------DLSEYSVIQTKEPLDREGKVSRIVEFIE-----KPDQPQ----------TLDS  207 (297)
T ss_pred             cEEEEE-ECC-C---------------CCCCceEEEecCcccCCCCeeeEEEEEE-----CCCCcc----------cCCc
Confidence            755443 221 0               25688999986    3453  2445553     432100          1235


Q ss_pred             CceeceEEeeCHHHHHHHHhcCc---ccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcc
Q 018019          206 DLMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF  282 (362)
Q Consensus       206 ~l~~~giYi~s~~vl~~~~~~~~---~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (362)
                      +++++|+|+|++++|..+.+...   +...+ .|+++.+++.                                      
T Consensus       208 ~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~l-td~i~~l~~~--------------------------------------  248 (297)
T PRK10122        208 DLMAVGRYVLSADIWPELERTEPGAWGRIQL-TDAIAELAKK--------------------------------------  248 (297)
T ss_pred             cEEEEEEEEECHHHHHHHHhCCCCCCCeeeH-HHHHHHHHhC--------------------------------------
Confidence            78999999999999987744111   11112 3666666532                                      


Q ss_pred             cccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHH-hh
Q 018019          283 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV-IG  331 (362)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~-l~  331 (362)
                                       .++++|.+  +|+|..|.++.+|.++|.++ |.
T Consensus       249 -----------------~~v~~~~~--~G~w~DiG~p~~~~~a~~~~~~~  279 (297)
T PRK10122        249 -----------------QSVDAMLM--TGDSYDCGKKMGYMQAFVKYGLR  279 (297)
T ss_pred             -----------------CCEEEEEe--CCEEEcCCCHHHHHHHHHHHHhc
Confidence                             24688888  78999999999999999998 54

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=100.00  E-value=5.7e-32  Score=246.21  Aligned_cols=226  Identities=19%  Similarity=0.328  Sum_probs=179.2

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcC--Cc----
Q 018019            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVD--RL----   77 (362)
Q Consensus         4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~--~~----   77 (362)
                      +|||||||.|+||+|+ |..+||||+||+|||||+|+|++|.++|+++|+|++++..  +.+.+++.+....  .+    
T Consensus         1 kavilaaG~gtRl~~~-t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~   77 (254)
T TIGR02623         1 KAVILAGGLGTRISEE-THLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKG--YVIKEYFANYFLHMSDVTFHM   77 (254)
T ss_pred             CEEEEcCccccccCcc-ccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCH--HHHHHHHHhhhhcccCeeEEe
Confidence            5899999999999999 9999999999999999999999999999999999999763  5788888653210  11    


Q ss_pred             ---------------ceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeecc
Q 018019           78 ---------------HVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV  142 (362)
Q Consensus        78 ---------------~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~  142 (362)
                                     .+.+..+.+..||+++++.+++++.+++|+|++||++++.++.++++.|.+.++++|+++..   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~---  154 (254)
T TIGR02623        78 ADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ---  154 (254)
T ss_pred             cccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec---
Confidence                           12233334568999999999999866789999999999999999999999999999876542   


Q ss_pred             CCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHH
Q 018019          143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE  222 (362)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~  222 (362)
                                      ++..||++.+|+ + .+..+.     ||+.              ..++++++|+|+|++++|. 
T Consensus       155 ----------------~~~~yG~v~~d~-~-~V~~~~-----Ekp~--------------~~~~~i~~Giyi~~~~il~-  196 (254)
T TIGR02623       155 ----------------PPGRFGALDLEG-E-QVTSFQ-----EKPL--------------GDGGWINGGFFVLNPSVLD-  196 (254)
T ss_pred             ----------------CCCcccEEEECC-C-eEEEEE-----eCCC--------------CCCCeEEEEEEEEcHHHHh-
Confidence                            145689998885 4 456776     3432              1136889999999999995 


Q ss_pred             HHhcCcccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeE
Q 018019          223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC  302 (362)
Q Consensus       223 ~~~~~~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (362)
                      +++..  ..++..|+++.++++                                                       .++
T Consensus       197 ~l~~~--~~~~~~d~i~~l~~~-------------------------------------------------------~~v  219 (254)
T TIGR02623       197 LIDGD--ATVWEQEPLETLAQR-------------------------------------------------------GEL  219 (254)
T ss_pred             hcccc--CchhhhhHHHHHHhC-------------------------------------------------------CCE
Confidence            54432  235677899888743                                                       245


Q ss_pred             EEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 018019          303 CVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (362)
Q Consensus       303 ~~~~~~~~~y~~rin~~~~Y~~~n~~~l~~  332 (362)
                      ++|.+  +||+..|+|+.+|.+++...-..
T Consensus       220 ~~~~~--~g~w~dIgt~~~~~~~~~~~~~~  247 (254)
T TIGR02623       220 SAYEH--SGFWQPMDTLRDKNYLEELWESG  247 (254)
T ss_pred             EEEeC--CCEEecCCchHHHHHHHHHHHcC
Confidence            88888  79999999999999998877653

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=100.00  E-value=6.9e-32  Score=243.91  Aligned_cols=231  Identities=21%  Similarity=0.314  Sum_probs=174.0

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcc--eE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH--VE   80 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~--i~   80 (362)
                      |+|||||||.|+||+|+ |..+||+|+||+|+|||+|+|++|.++|+++|+|++++.. .+.+.+|+.+.  ..++  +.
T Consensus         1 m~~iIlAaG~gtRl~pl-t~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~-~~~~~~~l~~~--~~~~~~i~   76 (240)
T cd02538           1 MKGIILAGGSGTRLYPL-TKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPED-LPLFKELLGDG--SDLGIRIT   76 (240)
T ss_pred             CeEEEEcCcCcccCCcc-ccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcch-HHHHHHHHhcc--cccCceEE
Confidence            58999999999999999 9999999999999999999999999999999999887543 35777888642  1233  43


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (362)
                      +..++...|++++++.+.+++..++++|++||. +.+.++.++++.|.++++++|+++.+..                 +
T Consensus        77 ~~~~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~  139 (240)
T cd02538          77 YAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN-----------------D  139 (240)
T ss_pred             EeeCCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC-----------------c
Confidence            444455689999999999988767799999995 5577899999999888888888876542                 1


Q ss_pred             CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc--ccccc-hhh
Q 018019          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD--KFQSL-KQD  236 (362)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~--~~~s~-~~d  236 (362)
                      +..|+++.+|++|++ ..+.+     |+.             ...++++++|+|+|++++|+.+ ++..  +..++ -.|
T Consensus       140 ~~~~g~v~~d~~g~v-~~~~e-----kp~-------------~~~~~~~~~Giyi~~~~~l~~l-~~~~~~~~~~~~l~d  199 (240)
T cd02538         140 PERYGVVEFDENGRV-LSIEE-----KPK-------------KPKSNYAVTGLYFYDNDVFEIA-KQLKPSARGELEITD  199 (240)
T ss_pred             hhcCceEEecCCCcE-EEEEE-----CCC-------------CCCCCeEEEEEEEECHHHHHHH-HhcCCCCCCeEEhHH
Confidence            457899999987764 56663     321             1224688999999999999644 4221  11111 237


Q ss_pred             hhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEe
Q 018019          237 VLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRL  316 (362)
Q Consensus       237 ~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ri  316 (362)
                      +++.++++.                                                       ++.+|.++.+|||..|
T Consensus       200 ~~~~l~~~g-------------------------------------------------------~~~~~~~~~~g~w~di  224 (240)
T cd02538         200 VNNEYLEKG-------------------------------------------------------KLSVELLGRGFAWLDT  224 (240)
T ss_pred             HHHHHHHhC-------------------------------------------------------CeEEEEeCCCcEEEeC
Confidence            777776432                                                       1234444325899999


Q ss_pred             CCHHHHHHHhHHH
Q 018019          317 NSIQAFMDINRDV  329 (362)
Q Consensus       317 n~~~~Y~~~n~~~  329 (362)
                      +|+.+|+++|+.+
T Consensus       225 gt~~~~~~a~~~~  237 (240)
T cd02538         225 GTHESLLEASNFV  237 (240)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999999854

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=100.00  E-value=9.3e-32  Score=248.19  Aligned_cols=234  Identities=18%  Similarity=0.302  Sum_probs=178.8

Q ss_pred             CC-ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MD-FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~-~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |. |+|||||||.||||+|+ |..+||||+||+|||||+|+|++|..+|+++|+|++.+.. .+.+.+++++...-...+
T Consensus         1 m~~~kaIILAgG~GtRL~Pl-T~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~-~~~~~~~l~~g~~~g~~i   78 (292)
T PRK15480          1 MKTRKGIILAGGSGTRLYPV-TMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGLNL   78 (292)
T ss_pred             CCceEEEEECCCcccccCcc-cCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCc-hHHHHHHHcCccccCcee
Confidence            65 89999999999999999 9999999999999999999999999999999998876443 346778876421002345


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019           80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (362)
                      .++.++.+.|+++|+..+.+++.+++++++.||. +++.++.++++.|.++++++|+++..++                 
T Consensus        79 ~y~~q~~~~Gta~Al~~a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~-----------------  141 (292)
T PRK15480         79 QYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN-----------------  141 (292)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC-----------------
Confidence            6677777899999999999998666788899994 5689999999999888888888876543                 


Q ss_pred             CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcC-c---ccccch
Q 018019          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-D---KFQSLK  234 (362)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~-~---~~~s~~  234 (362)
                      ++.+||++.+|++|++ ..+.     ||+.             ...++++++|+|+|++++++.+ +.. +   +-.++ 
T Consensus       142 ~p~~yGvv~~d~~g~v-~~i~-----EKP~-------------~p~s~~a~~GiY~~~~~v~~~~-~~~~~~~~ge~~i-  200 (292)
T PRK15480        142 DPERYGVVEFDQNGTA-ISLE-----EKPL-------------QPKSNYAVTGLYFYDNDVVEMA-KNLKPSARGELEI-  200 (292)
T ss_pred             CcccCcEEEECCCCcE-EEEE-----ECCC-------------CCCCCEEEEEEEEEChHHHHHH-hhcCCCCCCeeEh-
Confidence            2678999999987765 4666     4432             1346899999999999998654 321 1   11123 


Q ss_pred             hhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCc-eE
Q 018019          235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK-YC  313 (362)
Q Consensus       235 ~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~  313 (362)
                      .|+++.+++++.                                                      ...++..  +| +|
T Consensus       201 td~~~~~l~~g~------------------------------------------------------~~~~~~~--~g~~W  224 (292)
T PRK15480        201 TDINRIYMEQGR------------------------------------------------------LSVAMMG--RGYAW  224 (292)
T ss_pred             HHHHHHHHhcCC------------------------------------------------------eEEEEec--CCcEE
Confidence            366666654321                                                      1133333  56 59


Q ss_pred             EEeCCHHHHHHHhHHHh
Q 018019          314 VRLNSIQAFMDINRDVI  330 (362)
Q Consensus       314 ~rin~~~~Y~~~n~~~l  330 (362)
                      .-++|+.+|.++|+.+-
T Consensus       225 ~DiGt~~~l~~a~~~~~  241 (292)
T PRK15480        225 LDTGTHQSLIEASNFIA  241 (292)
T ss_pred             ECCCCHHHHHHHHHHHH
Confidence            99999999999998775

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-33  Score=247.39  Aligned_cols=289  Identities=21%  Similarity=0.367  Sum_probs=206.3

Q ss_pred             CCceEEEEeCC--CCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHh-CCCCeEEEEccCcchHHHHHHHHHhhhcC-C
Q 018019            1 MDFQVVVLAGG--TSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVD-R   76 (362)
Q Consensus         1 M~~~avIlA~G--~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~~-~   76 (362)
                      |.+.||||.||  +||||+|| +.+.||||.|++|+|||+|.++.+.+ .|..+|+++.-+.+  +.+.+++...... +
T Consensus         1 ~~~~AVIlVGGP~kGTRFRPL-Sf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e--~~f~~fis~~~~e~~   77 (407)
T KOG1460|consen    1 MKVKAVILVGGPQKGTRFRPL-SFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEE--RVFTDFISAIQQEFK   77 (407)
T ss_pred             CceEEEEEecCCCCCcccccc-ccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccc--hHHHHHHHHHHhhcc
Confidence            78999999999  69999999 99999999999999999999999977 58999999976653  3666776542111 2


Q ss_pred             cceEEEEcCCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCC
Q 018019           77 LHVEVATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (362)
Q Consensus        77 ~~i~i~~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (362)
                      ..+.+..++.+.||+++|++.++.|-   .+.++|++||+.+++++.+|++.|+..++.+|++..++...          
T Consensus        78 ~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e----------  147 (407)
T KOG1460|consen   78 VPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSRE----------  147 (407)
T ss_pred             cchhhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHh----------
Confidence            34556666778999999999988774   35699999999999999999999999999999998876531          


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccc
Q 018019          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSL  233 (362)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~  233 (362)
                           +..+||.++-|++...++++.     ||+.             +.-++.+++|+|+|++++|..+.+-   | ..
T Consensus       148 -----~asnfG~lV~dP~t~evlHYv-----eKPs-------------TfvSd~InCGvYlF~~eif~~i~~v---~-~q  200 (407)
T KOG1460|consen  148 -----QASNFGCLVEDPSTGEVLHYV-----EKPS-------------TFVSDIINCGVYLFTPEIFNAIAEV---Y-RQ  200 (407)
T ss_pred             -----HhhccCeeeecCCcCceEEee-----cCcc-------------hhhhcccceeEEEecHHHHHHHHHH---H-HH
Confidence                 257899999998777778887     4543             3457999999999999999766331   1 22


Q ss_pred             hhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceE
Q 018019          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC  313 (362)
Q Consensus       234 ~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  313 (362)
                      ++|+....  +++    ...|+-   +.|+        -.|++.-++.+        .+      .-.+|+|+.  ++||
T Consensus       201 ~~~~~~~~--~~~----~~l~~g---~~d~--------irLeqDvlspL--------ag------~k~lY~y~t--~~fW  247 (407)
T KOG1460|consen  201 RQDLLEVE--KDL----PLLQPG---PADF--------IRLEQDVLSPL--------AG------SKQLYAYET--TDFW  247 (407)
T ss_pred             HHhhhhhh--hcc----cccCCC---ccce--------EEeechhhhhh--------cC------CCceEEEec--ccHH
Confidence            22211110  011    001100   0000        00111111111        11      246799987  7899


Q ss_pred             EEeCCHHHHHHHhHHHhhhh---------------cccCCCCCCCCCCccCCCceecccccccC
Q 018019          314 VRLNSIQAFMDINRDVIGEA---------------NHLSGYNFSAQNNIIHPSAELGSKTTQLA  362 (362)
Q Consensus       314 ~rin~~~~Y~~~n~~~l~~~---------------~~~~~~~~~~~~~~i~~~~~i~~k~~i~~  362 (362)
                      ..|.|..+=..+|+-.|+.-               ..+-|..|+..+..+||+++|||+++|||
T Consensus       248 ~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga  311 (407)
T KOG1460|consen  248 SQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGA  311 (407)
T ss_pred             HHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecC
Confidence            99999988888888877621               01234556667777778888888888876

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=100.00  E-value=3.2e-31  Score=243.32  Aligned_cols=236  Identities=17%  Similarity=0.283  Sum_probs=174.4

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh-c-------
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V-------   74 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~-------   74 (362)
                      |+|||+|||.|+||+|+ |..+||||+||+|||||+|+|++|.++|+++|+|++++..  +++.+|+...+ .       
T Consensus         1 mkaiIlAaG~gtRl~pl-t~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~   77 (267)
T cd02541           1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGK--RAIEDHFDRSYELEETLEKK   77 (267)
T ss_pred             CeEEEEcCCCCccCCCc-ccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCch--HHHHHHhCCcHHHHHHHHhc
Confidence            58999999999999999 9999999999999999999999999999999999999764  47888885311 0       


Q ss_pred             -------------CCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEEe
Q 018019           75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC  138 (362)
Q Consensus        75 -------------~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~~  138 (362)
                                   ....+.++.++...|++++++.+++++..++|+|++||.++..   ++.++++.|++.++++ +++.
T Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~  156 (267)
T cd02541          78 GKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVE  156 (267)
T ss_pred             ccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEE
Confidence                         0123445556667999999999999987678999999976543   4999999998877764 4444


Q ss_pred             eeccCCCcccCCCCCccCCCCCCcceEEEEcCC-C--cEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEee
Q 018019          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPT-K--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF  215 (362)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~  215 (362)
                      ..+..               .+..|+++.+|++ +  ..+..+.+++..++                ..+.++++|+|+|
T Consensus       157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~----------------~~~~~~~~Giyi~  205 (267)
T cd02541         157 EVPPE---------------DVSKYGIVKGEKIDGDVFKVKGLVEKPKPEE----------------APSNLAIVGRYVL  205 (267)
T ss_pred             EcChh---------------cCccceEEEeecCCCCceEEeEEEECCCCCC----------------CCCceEEEEEEEc
Confidence            33211               2457899999862 2  24566664322111                2347889999999


Q ss_pred             CHHHHHHHHhcCcc--cccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCC
Q 018019          216 NRSVLQEVLDQKDK--FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGS  293 (362)
Q Consensus       216 s~~vl~~~~~~~~~--~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (362)
                      ++++|..+.+...+  -...-.|+++.+++.                                                 
T Consensus       206 ~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~-------------------------------------------------  236 (267)
T cd02541         206 TPDIFDILENTKPGKGGEIQLTDAIAKLLEE-------------------------------------------------  236 (267)
T ss_pred             CHHHHHHHHhCCCCCCCcEEHHHHHHHHHhc-------------------------------------------------
Confidence            99999766431111  011123666666632                                                 


Q ss_pred             CCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHHh
Q 018019          294 APVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI  330 (362)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l  330 (362)
                            .++++|.+  +|||..|+|+.+|+++||++.
T Consensus       237 ------~~v~~~~~--~g~w~digt~~~y~~a~~~~~  265 (267)
T cd02541         237 ------EPVYAYVF--EGKRYDCGNKLGYLKATVEFA  265 (267)
T ss_pred             ------CCEEEEEe--eeEEEeCCCHHHHHHHHHHHh
Confidence                  25688888  689999999999999999874

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=100.00  E-value=1e-30  Score=240.95  Aligned_cols=232  Identities=19%  Similarity=0.313  Sum_probs=174.8

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (362)
Q Consensus         4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~   83 (362)
                      +|||||||.||||+|+ |..+||+|+||+|||||+|+|++|..+|+++|+|++.+.. .+.+.+++.+...-...+.++.
T Consensus         1 kaIILAgG~GtRL~pl-T~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~-~~~~~~~lg~g~~~g~~i~~~~   78 (286)
T TIGR01207         1 KGIILAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQD-TPRFQQLLGDGSQWGVNLSYAV   78 (286)
T ss_pred             CEEEECCCCCccCCcc-cCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCc-HHHHHHHhccccccCceEEEEE
Confidence            5899999999999999 9999999999999999999999999999999998876433 3467777764210012455566


Q ss_pred             cCCCCCHHHHHHHHHHhcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCc
Q 018019           84 VPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (362)
Q Consensus        84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (362)
                      ++++.|++++++.+.+++..++++++.||. +++.++.++++.|.+.++++|+++.+++                 ++.+
T Consensus        79 q~~~~Gta~al~~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~-----------------~p~~  141 (286)
T TIGR01207        79 QPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS-----------------DPER  141 (286)
T ss_pred             ccCCCCHHHHHHHHHHHhCCCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc-----------------CHHH
Confidence            677899999999999999767888999994 5688999999999888888888877653                 2668


Q ss_pred             ceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcc--cccc-hhhhhh
Q 018019          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK--FQSL-KQDVLP  239 (362)
Q Consensus       163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~--~~s~-~~d~ip  239 (362)
                      ||++.+|+++++ ..+.     ||+.             ...++++++|+|+|++++++.+ +....  ..++ -.|+++
T Consensus       142 yGvv~~d~~g~V-~~i~-----EKp~-------------~~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~ge~eitdv~~  201 (286)
T TIGR01207       142 YGVVEFDSNGRA-ISIE-----EKPA-------------QPKSNYAVTGLYFYDNRVVEIA-RQLKPSARGELEITDLNR  201 (286)
T ss_pred             CceEEECCCCeE-EEEE-----ECCC-------------CCCCCEEEEEEEEEchHHHHHH-hhcCCCCCCcEeHHHHHH
Confidence            999999987764 5666     3432             1235789999999999998544 32210  1111 136666


Q ss_pred             HHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCce-EEEeCC
Q 018019          240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY-CVRLNS  318 (362)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~rin~  318 (362)
                      .++++..                                                     +.++.+  . +|| |..|.|
T Consensus       202 ~~l~~g~-----------------------------------------------------l~v~~~--~-~g~~W~DiGt  225 (286)
T TIGR01207       202 VYLEEGR-----------------------------------------------------LSVELL--G-RGYAWLDTGT  225 (286)
T ss_pred             HHHHcCC-----------------------------------------------------cEEEEe--c-CCCEEEeCCC
Confidence            6664321                                                     223333  2 466 999999


Q ss_pred             HHHHHHHhHHHh
Q 018019          319 IQAFMDINRDVI  330 (362)
Q Consensus       319 ~~~Y~~~n~~~l  330 (362)
                      ..+|+++|..+-
T Consensus       226 ~~~l~~A~~~~~  237 (286)
T TIGR01207       226 HDSLLEASNFIQ  237 (286)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987663

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=100.00  E-value=8.1e-31  Score=239.74  Aligned_cols=230  Identities=16%  Similarity=0.259  Sum_probs=170.3

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh-c-------
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V-------   74 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~-------   74 (362)
                      |+|||||||.||||+|+ |..+||||+||+|+|||+|+|++|.++|+++|+|++++..  +++.+|++..+ .       
T Consensus         1 m~avIlAaG~gtRl~pl-t~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~--~~i~~~~~~~~~~~~~~~~~   77 (260)
T TIGR01099         1 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGK--RAIEDHFDTSYELEHQLEKR   77 (260)
T ss_pred             CeEEEEcccCcccCCCc-ccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcH--HHHHHHhcccHHHHHHHHhh
Confidence            57999999999999999 9999999999999999999999999999999999999763  57888886311 0       


Q ss_pred             -------------CCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEEe
Q 018019           75 -------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC  138 (362)
Q Consensus        75 -------------~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~~  138 (362)
                                   ....+.+..+....|++++++.+.+++..++|+|++||.++..   ++.++++.|+++++++ +++.
T Consensus        78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~  156 (260)
T TIGR01099        78 GKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVE  156 (260)
T ss_pred             hhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEE
Confidence                         0112334445567999999999999886678999999976543   7999999999888876 4444


Q ss_pred             eeccCCCcccCCCCCccCCCCCCcceEEEEcC---CCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEee
Q 018019          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP---TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF  215 (362)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~---~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~  215 (362)
                      ..+..               .+..|+++.+|.   ++..+..+.+++..+                ...++++++|+|+|
T Consensus       157 ~~~~~---------------~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----------------~~~~~~~~~Giyi~  205 (260)
T TIGR01099       157 EVPKE---------------EVSKYGVIDGEGVEEGLYEIKDMVEKPKPE----------------EAPSNLAIVGRYVL  205 (260)
T ss_pred             ECChh---------------hcccCceEEeccccCCceeEEEEEECCCCC----------------CCCCceEEEEEEEC
Confidence            33211               256789998863   322456776432111                11346899999999


Q ss_pred             CHHHHHHHHhcCcc---cccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCC
Q 018019          216 NRSVLQEVLDQKDK---FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNG  292 (362)
Q Consensus       216 s~~vl~~~~~~~~~---~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (362)
                      ++++|..+.+....   ..++ .|+++.++++                                                
T Consensus       206 ~~~~~~~l~~~~~~~~~~~~l-~d~i~~l~~~------------------------------------------------  236 (260)
T TIGR01099       206 TPDIFDLLEETPPGAGGEIQL-TDALRKLLEK------------------------------------------------  236 (260)
T ss_pred             CHHHHHHHHhCCCCCCCceeH-HHHHHHHHhc------------------------------------------------
Confidence            99999877543221   1122 3666666532                                                


Q ss_pred             CCCCCceeeEEEEEecCCceEEEeCCHHHHHHH
Q 018019          293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDI  325 (362)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~  325 (362)
                             .++++|++  +|||..|.|+.+|+++
T Consensus       237 -------~~v~~~~~--~g~w~digs~~~y~~a  260 (260)
T TIGR01099       237 -------ETVYAYKF--KGKRYDCGSKLGYLKA  260 (260)
T ss_pred             -------CCEEEEEc--ceEEEeCCCHHHHhhC
Confidence                   24688888  7899999999999974

Built to distinquish between the highly similar genes galU and galF

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=99.98  E-value=2.7e-30  Score=232.83  Aligned_cols=232  Identities=20%  Similarity=0.342  Sum_probs=179.1

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |+|||+|||.|+||+|+ |..+||+|+||+|+|||+|++++|.++|+++|+|++++.  .+.+.+++++...-...+.++
T Consensus         1 m~avIlAaG~g~Rl~pl-t~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~--~~~~~~~~~~~~~~~~~i~~~   77 (236)
T cd04189           1 MKGLILAGGKGTRLRPL-TYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPT--GEEIKEALGDGSRFGVRITYI   77 (236)
T ss_pred             CeEEEECCCcccccccc-ccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCC--HHHHHHHhcchhhcCCeEEEE
Confidence            68999999999999999 999999999999999999999999999999999999874  357888886521111234455


Q ss_pred             EcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCc
Q 018019           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (362)
                      .+....|++++++.+..++..+++++++||.+++.++.++++.|..+++++++++.+.+                 .+..
T Consensus        78 ~~~~~~g~~~sl~~a~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~  140 (236)
T cd04189          78 LQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE-----------------DPRR  140 (236)
T ss_pred             ECCCCCChHHHHHHHHHhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC-----------------Cccc
Confidence            55667899999999999886578999999999999999999999988888888876532                 1456


Q ss_pred             ceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcc---cccchhhhhh
Q 018019          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK---FQSLKQDVLP  239 (362)
Q Consensus       163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~---~~s~~~d~ip  239 (362)
                      |+++.+|+ + .+..+.+     |+.             ...+.+.++|+|+|++++|..+......   -.++ .|+++
T Consensus       141 ~g~~~~d~-~-~v~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~d~~~  199 (236)
T cd04189         141 FGVAVVDD-G-RIVRLVE-----KPK-------------EPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TDAIQ  199 (236)
T ss_pred             ceEEEEcC-C-eEEEEEE-----CCC-------------CCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH-HHHHH
Confidence            78888875 4 4456553     321             1124678999999999999765321111   1112 46777


Q ss_pred             HHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCH
Q 018019          240 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI  319 (362)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~  319 (362)
                      .+++.+                                                      .++++|.+  +|||..|+|+
T Consensus       200 ~~i~~g------------------------------------------------------~~v~~~~~--~~~~~~i~t~  223 (236)
T cd04189         200 WLIDRG------------------------------------------------------RRVGYSIV--TGWWKDTGTP  223 (236)
T ss_pred             HHHHcC------------------------------------------------------CcEEEEEc--CceEEeCCCH
Confidence            766432                                                      35678877  7899999999


Q ss_pred             HHHHHHhHHHhh
Q 018019          320 QAFMDINRDVIG  331 (362)
Q Consensus       320 ~~Y~~~n~~~l~  331 (362)
                      ..|.++|+.+|+
T Consensus       224 ~dl~~a~~~~l~  235 (236)
T cd04189         224 EDLLEANRLLLD  235 (236)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999985

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=99.98  E-value=3.8e-31  Score=235.15  Aligned_cols=206  Identities=33%  Similarity=0.506  Sum_probs=157.4

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh----cCCcc
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY----VDRLH   78 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~----~~~~~   78 (362)
                      |+|||+|||.|+||.|+ |...||+|+|++|+|||+|++++|.++|+++|+|++++..  +.+.+++.+..    ....+
T Consensus         1 ~~avIlagg~g~rl~pl-t~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~--~~~~~~~~~~~~~~~~~~~~   77 (216)
T cd02507           1 FQAVVLADGFGSRFLPL-TSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHS--QAIIEHLLKSKWSSLSSKMI   77 (216)
T ss_pred             CeEEEEeCCCccccCcc-ccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcH--HHHHHHHHhcccccccCCce
Confidence            68999999999999999 9999999999999999999999999999999999999764  36667765421    11123


Q ss_pred             eEEEE--cCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHH--HHhcCCeEEEEEeeeccCCCcccCCCCCc
Q 018019           79 VEVAT--VPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAA--HRRHDAVVTAMICSVPVSGLSEAGSSGAK  154 (362)
Q Consensus        79 i~i~~--~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~--h~~~~a~~t~l~~~~~~~~~~~~~~~~~~  154 (362)
                      +.+..  +.+..|++++++.+.+.+ .++|+|++||++++.++..+++.  +...++++|+++..........       
T Consensus        78 v~~~~~~~~~~~Gta~~l~~~~~~i-~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~-------  149 (216)
T cd02507          78 VDVITSDLCESAGDALRLRDIRGLI-RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTE-------  149 (216)
T ss_pred             EEEEEccCCCCCccHHHHHHHhhcC-CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCcc-------
Confidence            33333  245799999999999888 57899999999999999999965  4445666666665543211100       


Q ss_pred             cCCCCCCcceEEEEcCCC--cEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHH
Q 018019          155 DKTKKPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL  220 (362)
Q Consensus       155 ~~~~~~~~~~~v~~d~~~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl  220 (362)
                       ..+....++++++|+++  .+++++.+..+..+...+++++++++|++.++++++|+|||+|++|+|
T Consensus       150 -~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl  216 (216)
T cd02507         150 -QSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL  216 (216)
T ss_pred             -ccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence             01235678999999986  334444443333333456999999999999999999999999999975

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=99.97  E-value=4.8e-30  Score=233.64  Aligned_cols=224  Identities=18%  Similarity=0.306  Sum_probs=173.9

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE---
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV---   81 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i---   81 (362)
                      |||||||.|+||+|+ |..+||||+||+|+|||+|+++++.++|+++|+|++++.  .+.+.+++.+......++.+   
T Consensus         1 aiilaaG~g~Rl~pl-t~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~~~~~~   77 (253)
T cd02524           1 VVILAGGLGTRLSEE-TELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYK--GHVIKEYFLNYFLHNSDVTIDLG   77 (253)
T ss_pred             CEEEecCCccccCCc-cCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCC--HHHHHHHHHhhhhhcCceeEeec
Confidence            699999999999999 999999999999999999999999999999999999976  35888888753211111111   


Q ss_pred             ------E------------EcCCCCCHHHHHHHHHHhcCC-CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeecc
Q 018019           82 ------A------------TVPEDVGTAGALRAIAHHLTA-KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV  142 (362)
Q Consensus        82 ------~------------~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~  142 (362)
                            .            .+....||+++++.+++++.. ++|++++||++++.++..+++.|...++++|+++.. + 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~-~-  155 (253)
T cd02524          78 TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH-P-  155 (253)
T ss_pred             ccceeeecccccccceeecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec-C-
Confidence                  1            112246799999999999865 789999999999999999999999999999987643 1 


Q ss_pred             CCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHH
Q 018019          143 SGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQE  222 (362)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~  222 (362)
                                       +..|+++.+|++|++ ..+.+     |+.              ..+.++++|+|+|++++|..
T Consensus       156 -----------------~~~~g~v~~d~~g~V-~~~~e-----kp~--------------~~~~~i~~Giyi~~~~l~~~  198 (253)
T cd02524         156 -----------------PGRFGELDLDDDGQV-TSFTE-----KPQ--------------GDGGWINGGFFVLEPEVFDY  198 (253)
T ss_pred             -----------------CCcccEEEECCCCCE-EEEEE-----CCC--------------CCCceEEEEEEEECHHHHHh
Confidence                             346788999988765 56653     321              11357899999999999865


Q ss_pred             HHhcCcccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeE
Q 018019          223 VLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC  302 (362)
Q Consensus       223 ~~~~~~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (362)
                      +...   ..++..|+++.|+++                                                       .++
T Consensus       199 l~~~---~~~~~~d~l~~li~~-------------------------------------------------------~~v  220 (253)
T cd02524         199 IDGD---DTVFEREPLERLAKD-------------------------------------------------------GEL  220 (253)
T ss_pred             hccc---cchhhHHHHHHHHhc-------------------------------------------------------CCE
Confidence            5332   233446788877743                                                       245


Q ss_pred             EEEEecCCceEEEeCCHHHHHHHhHHHh
Q 018019          303 CVYIASNSKYCVRLNSIQAFMDINRDVI  330 (362)
Q Consensus       303 ~~~~~~~~~y~~rin~~~~Y~~~n~~~l  330 (362)
                      ++|.+  +|||..|+|+.+|.+++..+-
T Consensus       221 ~~~~~--~g~w~~I~t~~~~~~~~~~~~  246 (253)
T cd02524         221 MAYKH--TGFWQCMDTLRDKQTLEELWN  246 (253)
T ss_pred             EEEec--CCEEEeCcCHHHHHHHHHHHH
Confidence            78887  789999999999999996653

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=99.97  E-value=3.3e-30  Score=230.04  Aligned_cols=216  Identities=15%  Similarity=0.244  Sum_probs=168.2

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE-
Q 018019            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA-   82 (362)
Q Consensus         4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~-   82 (362)
                      +|||||||.|+||+|+ |..+||||+|++|+|||+|+|++|.++|+++|+|++++.  .+++.+|+.+   ..+++.+. 
T Consensus         1 kaiIlaaG~g~Rl~pl-t~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~---~~~~~~i~~   74 (221)
T cd06422           1 KAMILAAGLGTRMRPL-TDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHL--ADQIEAHLGD---SRFGLRITI   74 (221)
T ss_pred             CEEEEcCCCCCccccc-cCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCC--HHHHHHHHhc---ccCCceEEE
Confidence            5899999999999999 999999999999999999999999999999999999865  3588888875   12344443 


Q ss_pred             -EcC-CCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHH--hcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019           83 -TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHR--RHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (362)
Q Consensus        83 -~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~--~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (362)
                       .+. +..|++++++.+++++..++|+|++||++++.++.++++.|+  ..++.+|+...+.+                 
T Consensus        75 ~~~~~~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  137 (221)
T cd06422          75 SDEPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP-----------------  137 (221)
T ss_pred             ecCCCcccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC-----------------
Confidence             333 468999999999998866789999999999999999999998  45666776654432                 


Q ss_pred             CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhhhh
Q 018019          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVL  238 (362)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d~i  238 (362)
                      ....++++.+|+++++ ..+.     +++                ..+++++|+|+|++++|..+.+.   .. .-.|++
T Consensus       138 ~~~~~g~v~~d~~~~v-~~~~-----~~~----------------~~~~~~~Giyi~~~~~l~~l~~~---~~-~~~d~~  191 (221)
T cd06422         138 GHNGVGDFSLDADGRL-RRGG-----GGA----------------VAPFTFTGIQILSPELFAGIPPG---KF-SLNPLW  191 (221)
T ss_pred             CCCCcceEEECCCCcE-eecc-----cCC----------------CCceEEEEEEEEcHHHHhhCCcC---cc-cHHHHH
Confidence            1456788889887754 4443     232                12678999999999999766432   11 224777


Q ss_pred             hHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCC
Q 018019          239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS  318 (362)
Q Consensus       239 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~  318 (362)
                      +.++++                                                       .++++|.+  +|||..|+|
T Consensus       192 ~~l~~~-------------------------------------------------------~~~~~~~~--~g~w~di~t  214 (221)
T cd06422         192 DRAIAA-------------------------------------------------------GRLFGLVY--DGLWFDVGT  214 (221)
T ss_pred             HHHHHc-------------------------------------------------------CCeEEEec--CCEEEcCCC
Confidence            777643                                                       13477776  799999999


Q ss_pred             HHHHHHH
Q 018019          319 IQAFMDI  325 (362)
Q Consensus       319 ~~~Y~~~  325 (362)
                      +.+|.++
T Consensus       215 ~~~~~~a  221 (221)
T cd06422         215 PERLLAA  221 (221)
T ss_pred             HHHHhhC
Confidence            9999864

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=99.97  E-value=1.8e-29  Score=234.47  Aligned_cols=232  Identities=12%  Similarity=0.225  Sum_probs=174.3

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh--c---C--
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--V---D--   75 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~--~---~--   75 (362)
                      |+|||+|||.|+||+|+ |..+||+|+||+|||||+|+|++|.++|+++|+|++++..  +.+.+|+...+  .   +  
T Consensus         9 ~~aiIlaaG~g~Rl~~~-t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~~~~~~~~~~~l~~~   85 (302)
T PRK13389          9 KKAVIPVAGLGTRMLPA-TKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSK--NSIENHFDTSFELEAMLEKR   85 (302)
T ss_pred             eEEEEECCcCCccCCCc-cCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCH--HHHHHHHccchhhhhhhhhh
Confidence            68999999999999999 9999999999999999999999999999999999999763  57888886411  0   0  


Q ss_pred             ---------------CcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCccc--------CCChHHHHHHHHhcCCe
Q 018019           76 ---------------RLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVS--------DVPPGAVTAAHRRHDAV  132 (362)
Q Consensus        76 ---------------~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~--------~~~l~~~l~~h~~~~a~  132 (362)
                                     ...+.++.+.+..||++|++.+.+++.+++|+|++||.++        +.++.++++.|.+++++
T Consensus        86 ~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~  165 (302)
T PRK13389         86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS  165 (302)
T ss_pred             hhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence                           1123344456679999999999998866789999999765        37999999999888776


Q ss_pred             EEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcC----CC--cEEEEeecCcccccccccchHHHhhcCceeeecC
Q 018019          133 VTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP----TK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRAD  206 (362)
Q Consensus       133 ~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~----~~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~  206 (362)
                       |+++...+                 .+..||++.+++    .+  ..+..+.+++..+                ...++
T Consensus       166 -tl~~~~~~-----------------~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~----------------~~~s~  211 (302)
T PRK13389        166 -QIMVEPVA-----------------DVTAYGVVDCKGVELAPGESVPMVGVVEKPKAD----------------VAPSN  211 (302)
T ss_pred             -EEEEEEcc-----------------cCCcceEEEecCcccccCCcceEEEEEECCCCC----------------CCCcc
Confidence             56655432                 256789998864    11  2345666432111                01247


Q ss_pred             ceeceEEeeCHHHHHHHHhcCc---ccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCccc
Q 018019          207 LMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH  283 (362)
Q Consensus       207 l~~~giYi~s~~vl~~~~~~~~---~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (362)
                      ++++|+|+|++++|+ +++...   .....-.|+++.++++                                       
T Consensus       212 ~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~---------------------------------------  251 (302)
T PRK13389        212 LAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEK---------------------------------------  251 (302)
T ss_pred             EEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHc---------------------------------------
Confidence            899999999999995 444321   1111224777776642                                       


Q ss_pred             ccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHH
Q 018019          284 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  329 (362)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~  329 (362)
                                      .++++|.+  +|||..|.|+..|.++|++.
T Consensus       252 ----------------~~v~~~~~--~G~w~DIGtpe~~~~a~~~~  279 (302)
T PRK13389        252 ----------------ETVEAYHM--KGKSHDCGNKLGYMQAFVEY  279 (302)
T ss_pred             ----------------CCEEEEEe--eeEEEeCCCHHHHHHHHHHH
Confidence                            24688888  78999999999999999986

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=99.97  E-value=1.4e-28  Score=218.56  Aligned_cols=199  Identities=29%  Similarity=0.494  Sum_probs=154.5

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~   84 (362)
                      |||||||.|+||+|+ |..+||+|+|++|+|||+|++++|.++|+++|+|++++.  .+.+.+++.+.......+.++.+
T Consensus         1 aiIlaaG~g~R~~~~-t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~--~~~i~~~~~~~~~~~~~i~~~~~   77 (217)
T cd04181           1 AVILAAGKGTRLRPL-TDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYL--GEQIEEYFGDGSKFGVNIEYVVQ   77 (217)
T ss_pred             CEEecCCcccccccc-ccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHcChhhcCceEEEEeC
Confidence            699999999999999 999999999999999999999999999999999999865  35778887642111123555555


Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcce
Q 018019           85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN  164 (362)
Q Consensus        85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (362)
                      +...|++++++.+++++..++|+|++||++++.++.++++.|+++++++|+++.+.+                 .+..|+
T Consensus        78 ~~~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~  140 (217)
T cd04181          78 EEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE-----------------DPSRYG  140 (217)
T ss_pred             CCCCccHHHHHHhhhhcCCCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC-----------------CCCcce
Confidence            566899999999999886678999999999999999999999999999998876542                 255789


Q ss_pred             EEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc-ccccchhhhhhHHHH
Q 018019          165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-KFQSLKQDVLPYLVR  243 (362)
Q Consensus       165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~-~~~s~~~d~ip~l~~  243 (362)
                      ++.+|+++++ ..+.+     |+.             .....++++|+|+|++++|+. +++.. .-.++..|+++.+++
T Consensus       141 ~v~~d~~~~v-~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~  200 (217)
T cd04181         141 VVELDDDGRV-TRFVE-----KPT-------------LPESNLANAGIYIFEPEILDY-IPEILPRGEDELTDAIPLLIE  200 (217)
T ss_pred             EEEEcCCCcE-EEEEE-----CCC-------------CCCCCEEEEEEEEECHHHHHh-hhhcCCcccccHHHHHHHHHh
Confidence            9999987764 56653     321             011378899999999999854 44332 123344566666664

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=99.97  E-value=1.7e-28  Score=218.75  Aligned_cols=222  Identities=27%  Similarity=0.448  Sum_probs=171.7

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~   84 (362)
                      |||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++|+|++++..  +.+.+++.....-...+.+..+
T Consensus         1 aiIlaaG~g~R~~~~-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~--~~i~~~~~~~~~~~~~~~~~~~   77 (223)
T cd06915           1 AVILAGGLGTRLRSV-VKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLA--EQIEEYFGDGYRGGIRIYYVIE   77 (223)
T ss_pred             CEEecCCcccccCcc-cCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCH--HHHHHHHcCccccCceEEEEEC
Confidence            699999999999999 9999999999999999999999999999999999998653  4677777642100122334444


Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcce
Q 018019           85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN  164 (362)
Q Consensus        85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (362)
                      ....|++++++.+++++..+++++++||.+++.++.++++.|++.++++++++.+..                 ....++
T Consensus        78 ~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~  140 (223)
T cd06915          78 PEPLGTGGAIKNALPKLPEDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVP-----------------DASRYG  140 (223)
T ss_pred             CCCCcchHHHHHHHhhcCCCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECC-----------------CCCcce
Confidence            567999999999999886678999999998899999999999888888888776532                 134678


Q ss_pred             EEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhhhhhHHHHh
Q 018019          165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS  244 (362)
Q Consensus       165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d~ip~l~~~  244 (362)
                      ++.+|+++++ ..+.+     ++.             ...+.++++|+|+|++++|..+...  . .++..|+++.++++
T Consensus       141 ~v~~d~~~~v-~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~l~~~~~~--~-~~~~~~~~~~l~~~  198 (223)
T cd06915         141 NVTVDGDGRV-IAFVE-----KGP-------------GAAPGLINGGVYLLRKEILAEIPAD--A-FSLEADVLPALVKR  198 (223)
T ss_pred             eEEECCCCeE-EEEEe-----CCC-------------CCCCCcEEEEEEEECHHHHhhCCcc--C-CChHHHHHHHHHhc
Confidence            8888887654 56652     221             0135788999999999999765332  1 23456777776632


Q ss_pred             hhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHH
Q 018019          245 QLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMD  324 (362)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~  324 (362)
                                                                             -++++|++  +|++..|+|..+|++
T Consensus       199 -------------------------------------------------------~~v~~~~~--~~~~~dI~t~~dl~~  221 (223)
T cd06915         199 -------------------------------------------------------GRLYGFEV--DGYFIDIGIPEDYAR  221 (223)
T ss_pred             -------------------------------------------------------CcEEEEec--CCeEEecCCHHHHHh
Confidence                                                                   14688888  689999999999998


Q ss_pred             H
Q 018019          325 I  325 (362)
Q Consensus       325 ~  325 (362)
                      +
T Consensus       222 a  222 (223)
T cd06915         222 A  222 (223)
T ss_pred             h
Confidence            7

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=99.97  E-value=2.7e-28  Score=217.37  Aligned_cols=220  Identities=21%  Similarity=0.409  Sum_probs=168.3

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~   84 (362)
                      +||||||.|+||+|+ |.++||+|+|++|+|||+|+|++|.++|+++|+|++++.  .+.+.+++.........+.++.+
T Consensus         1 ~vIlaaG~g~R~~pl-t~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~~~~~~~~i~~~~~   77 (220)
T cd06426           1 VVIMAGGKGTRLRPL-TENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYL--AEMIEDYFGDGSKFGVNISYVRE   77 (220)
T ss_pred             CEEecCCCccccCcc-cCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccC--HHHHHHHHCCccccCccEEEEEC
Confidence            689999999999999 999999999999999999999999999999999999865  34677777642100123444444


Q ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcce
Q 018019           85 PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYN  164 (362)
Q Consensus        85 ~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (362)
                      +...|++++++.+.+.. .++|+|++||++++.++..+++.|+..++++++++....                 ....|+
T Consensus        78 ~~~~g~~~~l~~~~~~~-~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~g  139 (220)
T cd06426          78 DKPLGTAGALSLLPEKP-TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE-----------------VQVPYG  139 (220)
T ss_pred             CCCCcchHHHHHHHhhC-CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC-----------------CCCcce
Confidence            56789999998777655 578999999999999999999999988888888775532                 134578


Q ss_pred             EEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhhhhhHHHHh
Q 018019          165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRS  244 (362)
Q Consensus       165 ~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d~ip~l~~~  244 (362)
                      ++..|+ ++ +..+.     |++.               .+.++++|+|+|++.++..+ .+.. +.++ .++++.++++
T Consensus       140 ~~~~d~-~~-v~~~~-----ek~~---------------~~~~~~~Giy~~~~~~~~~i-~~~~-~~~l-~~~~~~~i~~  194 (220)
T cd06426         140 VVETEG-GR-ITSIE-----EKPT---------------HSFLVNAGIYVLEPEVLDLI-PKNE-FFDM-PDLIEKLIKE  194 (220)
T ss_pred             EEEECC-CE-EEEEE-----ECCC---------------CCCeEEEEEEEEcHHHHhhc-CCCC-CcCH-HHHHHHHHHC
Confidence            888885 54 45665     3321               13678999999999998655 3322 2223 3667766643


Q ss_pred             hhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHH
Q 018019          245 QLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMD  324 (362)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~  324 (362)
                      +                                                      .++++|.+  +|+|..|+|+.+|.+
T Consensus       195 ~------------------------------------------------------~~i~~~~~--~~~w~~igt~~dl~~  218 (220)
T cd06426         195 G------------------------------------------------------KKVGVFPI--HEYWLDIGRPEDYEK  218 (220)
T ss_pred             C------------------------------------------------------CcEEEEEe--CCeEEeCCCHHHHHh
Confidence            2                                                      34688888  689999999999999


Q ss_pred             Hh
Q 018019          325 IN  326 (362)
Q Consensus       325 ~n  326 (362)
                      +|
T Consensus       219 a~  220 (220)
T cd06426         219 AN  220 (220)
T ss_pred             hC
Confidence            86

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.96  E-value=5e-28  Score=238.63  Aligned_cols=232  Identities=19%  Similarity=0.304  Sum_probs=174.1

Q ss_pred             CC-ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MD-FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~-~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |+ +.|||||||.|+||    ...+||+|+|++|+|||+|+|++|.++|++++++++++..  +++.+++.+    ...+
T Consensus         1 m~~~~avIlAaG~g~Rl----~~~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~--~~i~~~~~~----~~~i   70 (459)
T PRK14355          1 MNNLAAIILAAGKGTRM----KSDLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQA--EKVREHFAG----DGDV   70 (459)
T ss_pred             CCcceEEEEcCCCCccc----CCCCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCH--HHHHHHhcc----CCce
Confidence            44 78999999999999    4578999999999999999999999999999999998653  467777753    1245


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhcCC--CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCcc
Q 018019           80 EVATVPEDVGTAGALRAIAHHLTA--KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD  155 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~  155 (362)
                      .++.++...|++++++.+++++.+  ++|++++||.  +.+.++..+++.|...+++++++..+..              
T Consensus        71 ~~~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~--------------  136 (459)
T PRK14355         71 SFALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE--------------  136 (459)
T ss_pred             EEEecCCCCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC--------------
Confidence            566667779999999999998853  6799999995  6678899999999888888888765432              


Q ss_pred             CCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc-----cc
Q 018019          156 KTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-----KF  230 (362)
Q Consensus       156 ~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~-----~~  230 (362)
                         .+..|+.+.+|+++++ ..+.+     |+..-+.         ...++++++|+|+|++++|...++...     ..
T Consensus       137 ---~~~~~g~v~~d~~g~v-~~~~e-----k~~~~~~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e  198 (459)
T PRK14355        137 ---NPFGYGRIVRDADGRV-LRIVE-----EKDATPE---------ERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGE  198 (459)
T ss_pred             ---CCCcCCEEEEcCCCCE-EEEEE-----cCCCChh---------HhhccEEEEEEEEEeHHHHHHHHHHcCccccCCc
Confidence               1456788888887764 56653     2210000         012468899999999997656554211     11


Q ss_pred             ccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCC
Q 018019          231 QSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNS  310 (362)
Q Consensus       231 ~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (362)
                      .+ -.|+++.|++++                                                      .++++|.+  +
T Consensus       199 ~~-~~d~i~~l~~~g------------------------------------------------------~~v~~~~~--~  221 (459)
T PRK14355        199 YY-LTDIVAMAAAEG------------------------------------------------------LRCLAFPV--A  221 (459)
T ss_pred             ee-HHHHHHHHHHCC------------------------------------------------------CeEEEEEc--C
Confidence            12 246777766432                                                      46788888  5


Q ss_pred             ce--EEEeCCHHHHHHHhHHHhh
Q 018019          311 KY--CVRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       311 ~y--~~rin~~~~Y~~~n~~~l~  331 (362)
                      +|  |..++|+.+|+++++.++.
T Consensus       222 ~~~~~~~i~~~~~~~~a~~~l~~  244 (459)
T PRK14355        222 DPDEIMGVNDRAQLAEAARVLRR  244 (459)
T ss_pred             CHHHhcCCCCHHHHHHHHHHHHH
Confidence            66  8999999999999886664

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.96  E-value=4.3e-28  Score=239.75  Aligned_cols=231  Identities=20%  Similarity=0.261  Sum_probs=172.1

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |.|+|||||||+|+||++    .+||+|+|++|+|||+|+|++|.++|+++|+|++++.  .+.+.+++.     ..++.
T Consensus         6 ~~~~avILAaG~gtRl~~----~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~--~~~i~~~~~-----~~~i~   74 (481)
T PRK14358          6 RPLDVVILAAGQGTRMKS----ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHG--AEQVEAALQ-----GSGVA   74 (481)
T ss_pred             CCceEEEECCCCCCcCCC----CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhc-----cCCcE
Confidence            678999999999999954    5899999999999999999999999999999999865  346777664     23577


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019           81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (362)
                      ++.++...|++++++.+++++.  +++|++++||.  +.+.++.++++.|+++++++|+++...+               
T Consensus        75 ~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~---------------  139 (481)
T PRK14358         75 FARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP---------------  139 (481)
T ss_pred             EecCCCcCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC---------------
Confidence            7766677899999999988874  35699999995  7788899999999999999998876543               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHH---HHHHHhcCc-cccc
Q 018019          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSV---LQEVLDQKD-KFQS  232 (362)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~v---l~~~~~~~~-~~~s  232 (362)
                        ++..|+++.+|+++++ ..+.++++...      +        ....+++++|+|+|++++   +..+..... +..+
T Consensus       140 --~~~~yG~v~~d~~g~v-~~~~Ek~~~~~------~--------~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~  202 (481)
T PRK14358        140 --DATGYGRIVRGADGAV-ERIVEQKDATD------A--------EKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYY  202 (481)
T ss_pred             --CCCCceEEEECCCCCE-EEEEECCCCCh------h--------HhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEE
Confidence              1456899999988764 56664221100      0        011356899999999655   432211111 1223


Q ss_pred             chhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCce
Q 018019          233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY  312 (362)
Q Consensus       233 ~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  312 (362)
                      + .|+++.++++.                                                      .++++|.+  ++|
T Consensus       203 l-~d~i~~~~~~g------------------------------------------------------~~i~~~~~--~~~  225 (481)
T PRK14358        203 L-TDLLGLYRAGG------------------------------------------------------AQVRAFKL--SDP  225 (481)
T ss_pred             H-HHHHHHHHHCC------------------------------------------------------CeEEEEec--CCH
Confidence            3 37777776432                                                      35677777  678


Q ss_pred             EEEeCCHHHHHHHhHH-Hhh
Q 018019          313 CVRLNSIQAFMDINRD-VIG  331 (362)
Q Consensus       313 ~~rin~~~~Y~~~n~~-~l~  331 (362)
                      +.-++...+|+.+|++ +|+
T Consensus       226 ~~~i~~~~~~~l~~~~~~l~  245 (481)
T PRK14358        226 DEVLGANDRAGLAQLEATLR  245 (481)
T ss_pred             HHhcCCCCHHHHHHHHHHHH
Confidence            8888988999999986 664

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=1.4e-27  Score=220.66  Aligned_cols=202  Identities=27%  Similarity=0.382  Sum_probs=166.0

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |.+.+||||+|+||||    .+..||-|.|++||||++|+++.+...+.+++++++++.  .+.+++.+.+.    ..+.
T Consensus         1 ~~~~~vILAAGkGTRM----kS~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~--ae~V~~~~~~~----~~v~   70 (460)
T COG1207           1 MSLSAVILAAGKGTRM----KSDLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHG--AEQVREALAER----DDVE   70 (460)
T ss_pred             CCceEEEEecCCCccc----cCCCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCC--HHHHHHHhccc----cCce
Confidence            6789999999999999    788999999999999999999999999999999999976  46787777642    2588


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCcc
Q 018019           81 VATVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD  155 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~  155 (362)
                      ++.|.++.||++|+.++++++.   +.++||++||  +|+...|+.+++.|...++.+|+++...+              
T Consensus        71 ~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~--------------  136 (460)
T COG1207          71 FVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELD--------------  136 (460)
T ss_pred             EEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcC--------------
Confidence            9999999999999999999993   2469999999  68888899999999999999999988754              


Q ss_pred             CCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchh
Q 018019          156 KTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQ  235 (362)
Q Consensus       156 ~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~  235 (362)
                         +|..||.+..+++|.+ ..+.|    +|+.+-...          .-..+++|+|+|+...|..++..-.+-+...+
T Consensus       137 ---dP~GYGRIvr~~~g~V-~~IVE----~KDA~~eek----------~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgE  198 (460)
T COG1207         137 ---DPTGYGRIVRDGNGEV-TAIVE----EKDASEEEK----------QIKEINTGIYAFDGAALLRALPKLSNNNAQGE  198 (460)
T ss_pred             ---CCCCcceEEEcCCCcE-EEEEE----cCCCCHHHh----------cCcEEeeeEEEEcHHHHHHHHHHhccccccCc
Confidence               3789999999988865 57775    333211111          11578999999999988888876444456678


Q ss_pred             hhhhHHHHh
Q 018019          236 DVLPYLVRS  244 (362)
Q Consensus       236 d~ip~l~~~  244 (362)
                      .+|++++.-
T Consensus       199 YYLTDvI~i  207 (460)
T COG1207         199 YYLTDVIAI  207 (460)
T ss_pred             EeHHHHHHH
Confidence            888888754

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.95  E-value=3.5e-26  Score=226.72  Aligned_cols=233  Identities=23%  Similarity=0.293  Sum_probs=169.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      .+.|||||||.|+||++    .+||+|+|++|+|||+|+|++|.++|+++++|++++..  +.+.+++...   ...+.+
T Consensus         4 ~~~avILAaG~gtRm~~----~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~---~~~~~~   74 (482)
T PRK14352          4 PTAVIVLAAGAGTRMRS----DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDR--ERVAPAVAEL---APEVDI   74 (482)
T ss_pred             CceEEEEcCCCCCcCCC----CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCH--HHHHHHhhcc---CCccEE
Confidence            35799999999999953    68999999999999999999999999999999998653  4677776542   123555


Q ss_pred             EEcCCCCCHHHHHHHHHHhcCC---CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019           82 ATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~---~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (362)
                      +.++...|++++++.+++++..   ++++|++||.  +.+.++.++++.|++.+++++++..+..               
T Consensus        75 ~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~---------------  139 (482)
T PRK14352         75 AVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD---------------  139 (482)
T ss_pred             EeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC---------------
Confidence            6666778999999999988752   5699999995  5677899999999888888887655432               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc-----ccc
Q 018019          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-----KFQ  231 (362)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~-----~~~  231 (362)
                        .+..|+.+..++++++ ..+.++++...      +        ....+++++|+|+|++++|..++++..     +..
T Consensus       140 --~p~~yg~~~~~~~g~V-~~~~EKp~~~~------~--------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~  202 (482)
T PRK14352        140 --DPTGYGRILRDQDGEV-TAIVEQKDATP------S--------QRAIREVNSGVYAFDAAVLRSALARLSSDNAQGEL  202 (482)
T ss_pred             --CCCCCCEEEECCCCCE-EEEEECCCCCH------H--------HhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence              2557888888877764 56664221100      0        012356899999999999977654321     111


Q ss_pred             cchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCc
Q 018019          232 SLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK  311 (362)
Q Consensus       232 s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (362)
                      . -.|+++++++.+                                                      .++++|.+  +|
T Consensus       203 ~-l~d~i~~l~~~g------------------------------------------------------~~V~~~~~--~g  225 (482)
T PRK14352        203 Y-LTDVLAIAREAG------------------------------------------------------HRVGAHHA--DD  225 (482)
T ss_pred             e-HHHHHHHHHHCC------------------------------------------------------CeEEEEec--CC
Confidence            1 246777766432                                                      35688877  78


Q ss_pred             eEEEeCCHHHH------HHHhHHHhhh
Q 018019          312 YCVRLNSIQAF------MDINRDVIGE  332 (362)
Q Consensus       312 y~~rin~~~~Y------~~~n~~~l~~  332 (362)
                      ||.-+.....|      ..+|+++|+.
T Consensus       226 ~w~~~g~~~~~~~~~a~~~~~~~~~~~  252 (482)
T PRK14352        226 SAEVAGVNDRVQLAALGAELNRRIVEA  252 (482)
T ss_pred             cceEEcCCCHHHHHHHHHHHHHHHHHH
Confidence            99888866666      5667777764

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.95  E-value=4.9e-26  Score=224.39  Aligned_cols=197  Identities=16%  Similarity=0.249  Sum_probs=143.1

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |.|++||||||.|+||+    ..+||+|+|++|+|||+|++++|.++|++++++++++.  .+.+.+++..     .++.
T Consensus         4 ~~~~aiIlAaG~gtRl~----~~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~--~~~i~~~~~~-----~~~~   72 (456)
T PRK09451          4 SAMSVVILAAGKGTRMY----SDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHG--GDLLKQTLAD-----EPLN   72 (456)
T ss_pred             CCceEEEEcCCCCCcCC----CCCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhhcc-----CCcE
Confidence            46899999999999995    46899999999999999999999999999999999865  3466666642     2466


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCC
Q 018019           81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (362)
                      ++.++...|++++++.+++++. .+++++++||.  +.+.++..+++.|.+.+  +++++.+..                
T Consensus        73 ~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~----------------  134 (456)
T PRK09451         73 WVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLD----------------  134 (456)
T ss_pred             EEECCCCCCcHHHHHHHHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcC----------------
Confidence            7767777999999999988875 36799999995  67788999998886544  344443322                


Q ss_pred             CCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc-----cccc
Q 018019          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD-----KFQS  232 (362)
Q Consensus       158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~-----~~~s  232 (362)
                       ++..|+++.. ++++ +..+.+++....      .        ...++++++|+|+|++++|.++++...     +...
T Consensus       135 -~~~~yG~v~~-~~g~-V~~~~EKp~~~~------~--------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~  197 (456)
T PRK09451        135 -NPTGYGRITR-ENGK-VVGIVEQKDATD------E--------QRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYY  197 (456)
T ss_pred             -CCCCceEEEe-cCCe-EEEEEECCCCCh------H--------HhhccEEEEEEEEEEHHHHHHHHHhcCCccccCcee
Confidence             2456888744 4564 567764321100      0        112367899999999999977665321     1122


Q ss_pred             chhhhhhHHHHh
Q 018019          233 LKQDVLPYLVRS  244 (362)
Q Consensus       233 ~~~d~ip~l~~~  244 (362)
                      + .|+++.++++
T Consensus       198 l-~d~i~~~i~~  208 (456)
T PRK09451        198 I-TDIIALAHQE  208 (456)
T ss_pred             H-HHHHHHHHHC
Confidence            3 4788887754

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.94  E-value=5.4e-25  Score=197.69  Aligned_cols=178  Identities=18%  Similarity=0.267  Sum_probs=133.5

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcch-HHHHHHHHHhhhcCCcceEEE-
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADA-ALRVGGWISAAYVDRLHVEVA-   82 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~-~~~i~~~~~~~~~~~~~i~i~-   82 (362)
                      +||||||+|+||+|+ |..+||||+|++|+|||+|+|++|.++|+++++|+++.... .+.+..++...   ..++.++ 
T Consensus         1 ~iIlAaG~g~Rl~pl-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~---~~~~~i~~   76 (231)
T cd04183           1 IIIPMAGLGSRFKKA-GYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL---APNATVVE   76 (231)
T ss_pred             CEEECCcCCcccccc-CCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh---CCCCEEEE
Confidence            489999999999999 99999999999999999999999999999999999873211 11222222211   1234433 


Q ss_pred             EcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCC
Q 018019           83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (362)
                      .+....|++++++.++..+. .++|+|++||++++.++..++..|.+.+++.++++....                  ..
T Consensus        77 ~~~~~~g~~~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~  138 (231)
T cd04183          77 LDGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS------------------HP  138 (231)
T ss_pred             eCCCCCcHHHHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC------------------CC
Confidence            34567999999999999885 478999999999999999999988877777776655421                  34


Q ss_pred             cceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHH-HHHHHHh
Q 018019          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS-VLQEVLD  225 (362)
Q Consensus       162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~-vl~~~~~  225 (362)
                      .|+++.+|+++++ ..+.+     |+               ..+.+.++|+|+|+++ .|...++
T Consensus       139 ~~~~v~~d~~~~v-~~~~e-----k~---------------~~~~~~~~Giy~~~~~~~~~~~l~  182 (231)
T cd04183         139 RWSYVKLDENGRV-IETAE-----KE---------------PISDLATAGLYYFKSGSLFVEAAK  182 (231)
T ss_pred             CeEEEEECCCCCE-EEeEE-----cC---------------CCCCccEeEEEEECcHHHHHHHHH
Confidence            6788989887764 45542     31               1246789999999997 5544443

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.94  E-value=7.7e-26  Score=198.75  Aligned_cols=129  Identities=22%  Similarity=0.327  Sum_probs=107.0

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhh--h-cC--Ccc
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAA--Y-VD--RLH   78 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~--~-~~--~~~   78 (362)
                      |||||||.|+||+|+ |.++||+|+||+|+ |||+|+++++..+|+++++|++++..  +.+.+++.+.  + .+  ..+
T Consensus         1 avILAaG~gtRl~pl-t~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~--~~i~~~~~~~~~~~~~~~~~~   77 (200)
T cd02508           1 AIILAGGEGTRLSPL-TKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKS--RSLNDHLGSGKEWDLDRKNGG   77 (200)
T ss_pred             CEEeCCCCCcccchh-hcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCCh--HHHHHHHhCCCcccCCCCCCC
Confidence            699999999999999 99999999999998 99999999999999999999999763  5788888641  1 11  112


Q ss_pred             eEEEE------cCCCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEE
Q 018019           79 VEVAT------VPEDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAM  136 (362)
Q Consensus        79 i~i~~------~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l  136 (362)
                      +.++.      ++...||+++++.+.+++.   .++|+|++||.+++.++.++++.|+++++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~  144 (200)
T cd02508          78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVV  144 (200)
T ss_pred             EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEE
Confidence            44443      2346999999999998884   3679999999999999999999998887777654

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.94  E-value=4.6e-25  Score=197.91  Aligned_cols=176  Identities=19%  Similarity=0.246  Sum_probs=131.5

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~   84 (362)
                      |||||||.|+||+|+ |..+||+|+|++|+|||+|++++|.++|+++|+|++++.  .+.+.+|+++.    .++.++..
T Consensus         1 aiIlAaG~g~Rl~~l-t~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~~~~~----~~~~~~~~   73 (229)
T cd02523           1 AIILAAGRGSRLRPL-TEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYK--KEQIEELLKKY----PNIKFVYN   73 (229)
T ss_pred             CEEEeccCccccchh-hCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccC--HHHHHHHHhcc----CCeEEEeC
Confidence            699999999999999 999999999999999999999999999999999999975  35788887642    35666665


Q ss_pred             CC--CCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCc
Q 018019           85 PE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGR  162 (362)
Q Consensus        85 ~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (362)
                      +.  ..|++++++.+++++ .+++++++||++++.   ++++.|.+.++++|+++.+...  .             ....
T Consensus        74 ~~~~~~g~~~s~~~~~~~~-~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~  134 (229)
T cd02523          74 PDYAETNNIYSLYLARDFL-DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTK--E-------------WEDE  134 (229)
T ss_pred             cchhhhCcHHHHHHHHHHc-CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcc--c-------------cccc
Confidence            43  589999999999988 578999999998754   5677788888888888765211  0             1223


Q ss_pred             ceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          163 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       163 ~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                      +++...|+ +++ ..+.     +++..            .....+.++|+|+|+++++..+.+
T Consensus       135 ~~~~~~~~-~~v-~~~~-----~k~~~------------~~~~~~~~~Giy~~~~~~~~~l~~  178 (229)
T cd02523         135 YVKDLDDA-GVL-LGII-----SKAKN------------LEEIQGEYVGISKFSPEDADRLAE  178 (229)
T ss_pred             ceeeecCc-cce-Eeec-----ccCCC------------cchhceEEEeEEEECHHHHHHHHH
Confidence            33333332 333 3443     22210            012367899999999999876643

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=2.5e-24  Score=212.54  Aligned_cols=181  Identities=22%  Similarity=0.360  Sum_probs=137.5

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |+++|||||||.|+||    ...+||+|+|++|+|||+|+|++|.++|+++++|++++..  +++.+++..      ++.
T Consensus         1 m~~~avIlAaG~g~Rl----~~~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~--~~i~~~~~~------~~~   68 (458)
T PRK14354          1 MNRYAIILAAGKGTRM----KSKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGA--EEVKEVLGD------RSE   68 (458)
T ss_pred             CCceEEEEeCCCCccc----CCCCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCH--HHHHHHhcC------CcE
Confidence            8999999999999999    4579999999999999999999999999999999988653  466666543      244


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcCC--CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019           81 VATVPEDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (362)
                      ++.+++..|++++++.+++++..  ++++++.||  ++.+.++.++++.|++.++++|+++....               
T Consensus        69 ~~~~~~~~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~---------------  133 (458)
T PRK14354         69 FALQEEQLGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE---------------  133 (458)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC---------------
Confidence            55566678999999999998853  569999999  46678899999999888888888765432               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                        ++..|+++..|+++++ ..+.+     ++. ....        .....++++|+|+|+++.|...++
T Consensus       134 --~~~~~g~v~~d~~~~V-~~~~e-----k~~-~~~~--------~~~~~~~~~Giy~f~~~~l~~~l~  185 (458)
T PRK14354        134 --NPTGYGRIIRNENGEV-EKIVE-----QKD-ATEE--------EKQIKEINTGTYCFDNKALFEALK  185 (458)
T ss_pred             --CCCCceEEEEcCCCCE-EEEEE-----CCC-CChH--------HhcCcEEEEEEEEEEHHHHHHHHH
Confidence              1445788888877764 45553     211 0000        012357899999999986655543

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=6.9e-25  Score=215.84  Aligned_cols=176  Identities=22%  Similarity=0.399  Sum_probs=134.4

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |+|||||||.|+||    ...+||+|+|++|||||+|+|++|.+.+ ++++|++++..  +.+.+++..      ++.++
T Consensus         1 m~avIlA~G~gtRl----~~~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~--~~i~~~~~~------~~~~~   67 (448)
T PRK14357          1 MRALVLAAGKGTRM----KSKIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEA--ELVKKLLPE------WVKIF   67 (448)
T ss_pred             CeEEEECCCCCccC----CCCCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCH--HHHHHhccc------ccEEE
Confidence            68999999999999    4578999999999999999999999875 88999988653  466666542      34566


Q ss_pred             EcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019           83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (362)
                      .++...|++++++.+++++. .++|++++||.  +.+.++.++++.|+++++++|+++.+..                 +
T Consensus        68 ~~~~~~g~~~ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~-----------------~  130 (448)
T PRK14357         68 LQEEQLGTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE-----------------D  130 (448)
T ss_pred             ecCCCCChHHHHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC-----------------C
Confidence            66677899999999999885 47899999995  7778899999999988999998876543                 2


Q ss_pred             CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                      +..|+++.++ +++ + .+.+     ++. .+..        ....+++++|+|+|++++|..+++
T Consensus       131 ~~~~g~v~~d-~g~-v-~~~e-----~~~-~~~~--------~~~~~~~~~GiYv~~~~~l~~~~~  179 (448)
T PRK14357        131 PTGYGRIIRD-GGK-Y-RIVE-----DKD-APEE--------EKKIKEINTGIYVFSGDFLLEVLP  179 (448)
T ss_pred             CCCcEEEEEc-CCe-E-EEEE-----CCC-CChH--------HhcCcEEEeEEEEEEHHHHHHHHH
Confidence            5578888777 454 3 3432     211 0000        011257899999999999877654

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.93  E-value=4e-24  Score=210.66  Aligned_cols=227  Identities=21%  Similarity=0.306  Sum_probs=162.3

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |+|||||||.|+||++    .+||+|+|++|+|||+|++++|.++|+++++|++++.  .+.+.+++.++     ++.++
T Consensus         1 m~aiIlAaG~g~R~~~----~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~--~~~i~~~~~~~-----~i~~~   69 (451)
T TIGR01173         1 LSVVILAAGKGTRMKS----DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHG--AEQVRKALANR-----DVNWV   69 (451)
T ss_pred             CeEEEEcCCCCcccCC----CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhcCC-----CcEEE
Confidence            6899999999999953    6899999999999999999999999999999998865  34677777642     46666


Q ss_pred             EcCCCCCHHHHHHHHHHhcCC-CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019           83 TVPEDVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (362)
                      .+....|++++++.+++++.. ++|+++.||.  +.+.++..+++.|.+.  .+++++.+..                 .
T Consensus        70 ~~~~~~G~~~ai~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~-----------------~  130 (451)
T TIGR01173        70 LQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP-----------------D  130 (451)
T ss_pred             EcCCCCchHHHHHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC-----------------C
Confidence            666678999999999998853 5799999996  6677899999988764  3555554431                 1


Q ss_pred             CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcc----cccchh
Q 018019          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQ  235 (362)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~----~~s~~~  235 (362)
                      +..|+.+.+|+++++ ..+.+++...     +.+         ....++++|+|+|++++|..+++....    ....-.
T Consensus       131 ~~~~g~v~~d~~g~v-~~~~ek~~~~-----~~~---------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~  195 (451)
T TIGR01173       131 PTGYGRIIRENDGKV-TAIVEDKDAN-----AEQ---------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLT  195 (451)
T ss_pred             CCCCCEEEEcCCCCE-EEEEEcCCCC-----hHH---------hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHH
Confidence            445788888877764 4555321110     000         012568999999999997666543211    011123


Q ss_pred             hhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCce--E
Q 018019          236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY--C  313 (362)
Q Consensus       236 d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~  313 (362)
                      ++++.|++++                                                      .++++|.+  +||  +
T Consensus       196 ~~~~~l~~~g------------------------------------------------------~~v~~~~~--~~~~~~  219 (451)
T TIGR01173       196 DVIALAVADG------------------------------------------------------ETVRAVQV--DDSDEV  219 (451)
T ss_pred             HHHHHHHHCC------------------------------------------------------CeEEEEEc--CChhhe
Confidence            6666665432                                                      35577776  677  7


Q ss_pred             EEeCCHHHHHHHhHHHh
Q 018019          314 VRLNSIQAFMDINRDVI  330 (362)
Q Consensus       314 ~rin~~~~Y~~~n~~~l  330 (362)
                      ..+++...|.+++..+.
T Consensus       220 ~~i~t~~dl~~~~~~l~  236 (451)
T TIGR01173       220 LGVNDRLQLAQLERILQ  236 (451)
T ss_pred             ecCCCHHHHHHHHHHHH
Confidence            88999888888776554

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=5.8e-24  Score=209.74  Aligned_cols=231  Identities=17%  Similarity=0.210  Sum_probs=161.9

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      +.|||||||+|+||    ...+||+|+|++|+|||+|++++|...++++++|++++.  .+.+.+++..     .++.++
T Consensus         6 ~~aiILAaG~gtR~----~~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~-----~~~~~v   74 (456)
T PRK14356          6 TGALILAAGKGTRM----HSDKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHR--ADMVRAAFPD-----EDARFV   74 (456)
T ss_pred             eeEEEEcCCCCccC----CCCCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhccc-----cCceEE
Confidence            67999999999999    567999999999999999999999999999999998865  2455555432     356677


Q ss_pred             EcCCCCCHHHHHHHHHHhcC---CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCC
Q 018019           83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (362)
                      .++...|++++++.+++++.   .+++++++||.  +...++..+++.|+  +++++++....+                
T Consensus        75 ~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~----------------  136 (456)
T PRK14356         75 LQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP----------------  136 (456)
T ss_pred             EcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC----------------
Confidence            77777999999999988875   36799999996  56678899998875  566777765543                


Q ss_pred             CCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccc----cc
Q 018019          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ----SL  233 (362)
Q Consensus       158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~----s~  233 (362)
                       ++..|+++.. ++|+ +..+.++++.....            ....++++++|+|+|++++|..+++......    ..
T Consensus       137 -~~~~~g~v~~-~~g~-V~~~~ek~~~~~~~------------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~  201 (456)
T PRK14356        137 -DPGAYGRVVR-RNGH-VAAIVEAKDYDEAL------------HGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYY  201 (456)
T ss_pred             -CCCCceEEEE-cCCe-EEEEEECCCCChHH------------hhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEE
Confidence             2456788766 4565 45665422111000            0112467899999999999876654321111    11


Q ss_pred             hhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceE
Q 018019          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC  313 (362)
Q Consensus       234 ~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  313 (362)
                      ..|+++.+++..                                                      .++++|...+..++
T Consensus       202 ltd~i~~~~~~g------------------------------------------------------~~v~~~~~~~~~~~  227 (456)
T PRK14356        202 ITDLVGLAVAEG------------------------------------------------------MNVLGVNCGEDPNL  227 (456)
T ss_pred             HHHHHHHHHHCC------------------------------------------------------CeEEEEEcCCcCeE
Confidence            235555544321                                                      35577766333357


Q ss_pred             EEeCCHHHHHHHhHHHhh
Q 018019          314 VRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       314 ~rin~~~~Y~~~n~~~l~  331 (362)
                      ..|||...|.+++..+.+
T Consensus       228 ~~I~tp~dl~~a~~~l~~  245 (456)
T PRK14356        228 LGVNTPAELVRSEELLRA  245 (456)
T ss_pred             ecCcCHHHHHHHHHHHHH
Confidence            899999999988765554

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.93  E-value=6.4e-24  Score=186.67  Aligned_cols=237  Identities=15%  Similarity=0.262  Sum_probs=174.8

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh---------
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY---------   73 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~---------   73 (362)
                      .+|||+|+|.||||.|. |...||-||||.+||+|+|+++.+..+||+++++|++...+  .+++|+...+         
T Consensus         5 rKAViPaAGlGTRfLPA-TKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~--~IeDhFD~s~ELE~~L~~~   81 (291)
T COG1210           5 RKAVIPAAGLGTRFLPA-TKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKR--AIEDHFDTSYELENTLEKR   81 (291)
T ss_pred             cEEEEEccCcccccccc-cccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcc--hHHHhCcCcHHHHHHHHHh
Confidence            68999999999999999 99999999999999999999999999999999999986643  6777765311         


Q ss_pred             ------------cCCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCeEEEEEe
Q 018019           74 ------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDV---PPGAVTAAHRRHDAVVTAMIC  138 (362)
Q Consensus        74 ------------~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~---~l~~~l~~h~~~~a~~t~l~~  138 (362)
                                  .....+.++.|.++.|.|+|++.|.+++.+++|.|+.+|.+...   .+..+++.+.+.+..+..+ .
T Consensus        82 ~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v-~  160 (291)
T COG1210          82 GKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGV-E  160 (291)
T ss_pred             CHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEE-E
Confidence                        01234667888999999999999999999999999999965543   3788999998888765443 3


Q ss_pred             eeccCCCcccCCCCCccCCCCCCcceEEE----EcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEe
Q 018019          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIG----MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYA  214 (362)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi  214 (362)
                      +++.+               +..+||++.    .+.+-..+..+.+++..+                ..+|++.-.|-|+
T Consensus       161 ev~~e---------------~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~----------------~APSnlai~GRYi  209 (291)
T COG1210         161 EVPPE---------------DVSKYGVIDPGEPVEKGVYKVKGMVEKPKPE----------------EAPSNLAIVGRYV  209 (291)
T ss_pred             ECCHH---------------HCcccceEecCccccCCeEEEEEEEECCCCC----------------CCCcceeeeeeee
Confidence            44311               267899987    232212345565433222                3568999999999


Q ss_pred             eCHHHHHHHHhcCcc-cccc-hhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCC
Q 018019          215 FNRSVLQEVLDQKDK-FQSL-KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNG  292 (362)
Q Consensus       215 ~s~~vl~~~~~~~~~-~~s~-~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (362)
                      +++++|+.+-....+ -..+ -.|-|-.|++.                                                
T Consensus       210 l~p~IFd~L~~~~~G~ggEiQLTDai~~L~~~------------------------------------------------  241 (291)
T COG1210         210 LTPEIFDILEETKPGAGGEIQLTDAIKKLLKK------------------------------------------------  241 (291)
T ss_pred             cCHHHHHHHhhCCCCCCCEeeHHHHHHHHHhh------------------------------------------------
Confidence            999999755332111 1111 23444444433                                                


Q ss_pred             CCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 018019          293 SAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~  331 (362)
                             -.+++|.+  +|=.-.+.+...|.++|.++.-
T Consensus       242 -------~~v~a~~~--~GkryD~G~k~Gyi~a~v~~~l  271 (291)
T COG1210         242 -------EPVLAYVF--EGKRYDCGSKLGYIKANVEFAL  271 (291)
T ss_pred             -------CcEEEEEe--cccEEccCCcccHHHHHHHHHh
Confidence                   24588888  6777788999999999988763

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.92  E-value=7.5e-24  Score=194.69  Aligned_cols=192  Identities=21%  Similarity=0.241  Sum_probs=140.3

Q ss_pred             ceEEEEeCCCCCCCCCCCCC-CCCeeeeeeCC-cchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            3 FQVVVLAGGTSKKLVPLVSK-EVPKALLPVAN-RPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~-~~pK~llpv~g-~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++||||||.||||+|| |. .+||+|+|++| +|||+|++++|... ++++|+|++++... +.+.+++...   ..++
T Consensus         1 m~~vILAgG~GtRl~Pl-S~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~-~~v~~~l~~~---~~~~   75 (274)
T cd02509           1 IYPVILAGGSGTRLWPL-SRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYR-FLVREQLPEG---LPEE   75 (274)
T ss_pred             CEEEEEcccccccCCcC-CCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHH-HHHHHHHhhc---CCCc
Confidence            57999999999999999 64 79999999999 89999999999998 49999999985432 3455566431   1356


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhcC----CCcEEEEeCCcccC--CChHHHHHHHHh---cCCeEEEEEeeeccCCCcccCC
Q 018019           80 EVATVPEDVGTAGALRAIAHHLT----AKDVLVVSGDLVSD--VPPGAVTAAHRR---HDAVVTAMICSVPVSGLSEAGS  150 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~----~~~~lv~~~D~i~~--~~l~~~l~~h~~---~~a~~t~l~~~~~~~~~~~~~~  150 (362)
                      .++.++...||++++..+...+.    ++.++|++||+++.  .++.++++.+.+   .++.+|+.+.+..         
T Consensus        76 ~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~---------  146 (274)
T cd02509          76 NIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTR---------  146 (274)
T ss_pred             eEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecC---------
Confidence            77777888999999998877764    35689999997665  456667765543   5677887765432         


Q ss_pred             CCCccCCCCCCcceEEEEcCCC-c---EEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019          151 SGAKDKTKKPGRYNIIGMDPTK-Q---FLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       151 ~~~~~~~~~~~~~~~v~~d~~~-~---~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                              ....||++..+++. .   .+..+.++++.++.    .+.+      .-...++++|+|+|++++|...++.
T Consensus       147 --------~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a----~~~~------~~g~~~wNsGiyi~~~~~l~~~l~~  208 (274)
T cd02509         147 --------PETGYGYIEAGEKLGGGVYRVKRFVEKPDLETA----KEYL------ESGNYLWNSGIFLFRAKTFLEELKK  208 (274)
T ss_pred             --------CCCCeEEEEeCCcCCCCceEEeEEEECcChHHH----HHHh------hcCCeEEECceeeeeHHHHHHHHHH
Confidence                    14689999998653 1   45677755443221    1111      1123588999999999988777653

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=7.7e-23  Score=200.33  Aligned_cols=229  Identities=19%  Similarity=0.294  Sum_probs=157.0

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |.++|||||||.|+||+    ..+||+|+|++|+|||+|+++.|..+ +++++|++++.  .+.+.+++.+.+   .++.
T Consensus         1 m~~~aiIlAaG~GtRl~----~~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~--~~~i~~~~~~~~---~~v~   70 (430)
T PRK14359          1 MKLSIIILAAGKGTRMK----SSLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQ--KERIKEAVLEYF---PGVI   70 (430)
T ss_pred             CCccEEEEcCCCCccCC----CCCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCC--HHHHHHHHHhcC---CceE
Confidence            88999999999999995    47999999999999999999999887 78899988865  357888876532   2566


Q ss_pred             EEEcCC--CCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019           81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (362)
Q Consensus        81 i~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (362)
                      ++.+++  ..||+++++.+..  ..++|++++||...-  ....++.+.+.++++++.+.+.+                 
T Consensus        71 ~~~~~~~~~~gt~~al~~~~~--~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~-----------------  129 (430)
T PRK14359         71 FHTQDLENYPGTGGALMGIEP--KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLA-----------------  129 (430)
T ss_pred             EEEecCccCCCcHHHHhhccc--CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcC-----------------
Confidence            766543  4799999987432  257899999996321  22445556666777777765532                 


Q ss_pred             CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcc----cccch
Q 018019          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQSLK  234 (362)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~----~~s~~  234 (362)
                      ++..|+.+..+ +++ +..+.++....+.              ....++.++|+|+|++++|..+.+....    ....-
T Consensus       130 ~~~~~g~v~~d-~g~-v~~i~e~~~~~~~--------------~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l  193 (430)
T PRK14359        130 DPKGYGRVVIE-NGQ-VKKIVEQKDANEE--------------ELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYL  193 (430)
T ss_pred             CCccCcEEEEc-CCe-EEEEEECCCCCcc--------------cccceEEEeEEEEEEHHHHHHHHHhcCcccccCceeh
Confidence            14457777665 454 4566532111000              0123678999999999999877543211    11112


Q ss_pred             hhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEE
Q 018019          235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCV  314 (362)
Q Consensus       235 ~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~  314 (362)
                      .|+++.+++.+                                                      .++++|..+ .+||.
T Consensus       194 ~d~i~~l~~~g------------------------------------------------------~~v~~~~~~-~~~w~  218 (430)
T PRK14359        194 TDIIALAIEKG------------------------------------------------------ETIKAVFVD-EENFM  218 (430)
T ss_pred             hhHHHHHHHcC------------------------------------------------------CeEEEEEcC-CCEEe
Confidence            35555554321                                                      456777763 36899


Q ss_pred             EeCCHHHHHHHhHHHhh
Q 018019          315 RLNSIQAFMDINRDVIG  331 (362)
Q Consensus       315 rin~~~~Y~~~n~~~l~  331 (362)
                      .|++..+|+++++.+.+
T Consensus       219 dI~t~~dl~~a~~~l~~  235 (430)
T PRK14359        219 GVNSKFELAKAEEIMQE  235 (430)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999865554

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=1.6e-23  Score=206.34  Aligned_cols=182  Identities=24%  Similarity=0.365  Sum_probs=140.6

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      +.+||||||.|+||+    ..+||+|+|++|+|||+|+|++|.++|+.+++|++++..  +.+.+++...    .++.++
T Consensus         2 ~~~iIlAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~~~----~~i~~v   71 (450)
T PRK14360          2 LAVAILAAGKGTRMK----SSLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQA--EEVEQSLAHL----PGLEFV   71 (450)
T ss_pred             ceEEEEeCCCCccCC----CCCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCH--HHHHHHhccc----CCeEEE
Confidence            679999999999994    478999999999999999999999999999999988653  4677766531    246676


Q ss_pred             EcCCCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019           83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (362)
                      .++...|++++++.+++++.  .++++|++||.  +.+.++..+++.|++.+++++++..+..                 
T Consensus        72 ~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~-----------------  134 (450)
T PRK14360         72 EQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP-----------------  134 (450)
T ss_pred             EeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC-----------------
Confidence            66667899999999988875  35799999996  7778899999999988888887655432                 


Q ss_pred             CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                      ++..|+.+.+|+++++ ..+.+++...     +.         ...++++++|+|+|++++|..++++
T Consensus       135 ~~~~~g~~~~d~~g~v-~~~~ek~~~~-----~~---------~~~~~~~~~Giy~f~~~~l~~~~~~  187 (450)
T PRK14360        135 NPKGYGRVFCDGNNLV-EQIVEDRDCT-----PA---------QRQNNRINAGIYCFNWPALAEVLPK  187 (450)
T ss_pred             CCCCccEEEECCCCCE-EEEEECCCCC-----hh---------HhcCcEEEEEEEEEEHHHHHHHHhh
Confidence            2456888888888765 5665322110     00         1235789999999999988877654

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=5e-23  Score=202.56  Aligned_cols=229  Identities=21%  Similarity=0.229  Sum_probs=158.0

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.|||||||.|+||+    ..+||+|+|++|||||+|++++|.++|+++++|++++.  .+.+.+++....   ..+.
T Consensus         4 ~~~~aiILAaG~gsR~~----~~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~--~~~i~~~~~~~~---~~~~   74 (446)
T PRK14353          4 RTCLAIILAAGEGTRMK----SSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPG--AEAVAAAAAKIA---PDAE   74 (446)
T ss_pred             ccceEEEEcCCCCCccC----CCCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCC--HHHHHHHhhccC---CCce
Confidence            45789999999999994    46899999999999999999999999999999999865  346777765421   1344


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019           81 VATVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (362)
                      ++.+....|++++++.+++++.  .+++++++||.  +...++..+++. .+.+++++++..+..               
T Consensus        75 ~~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~-~~~~~~~~i~~~~~~---------------  138 (446)
T PRK14353         75 IFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRER-LADGADVVVLGFRAA---------------  138 (446)
T ss_pred             EEEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHh-HhcCCcEEEEEEEeC---------------
Confidence            5555667899999999988874  46799999995  556678888874 455677777655432               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcc----ccc
Q 018019          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK----FQS  232 (362)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~----~~s  232 (362)
                        ++..|+.+.. ++++ +..+.+++..+.     .         .....+.++|+|+|+++.|..++++...    -..
T Consensus       139 --~~~~~g~~~~-~~g~-v~~~~ek~~~~~-----~---------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~  200 (446)
T PRK14353        139 --DPTGYGRLIV-KGGR-LVAIVEEKDASD-----E---------ERAITLCNSGVMAADGADALALLDRVGNDNAKGEY  200 (446)
T ss_pred             --CCCcceEEEE-CCCe-EEEEEECCCCCh-----H---------HhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcE
Confidence              2456777776 4454 456653221100     0         0112578899999999877666543211    001


Q ss_pred             chhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCce
Q 018019          233 LKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKY  312 (362)
Q Consensus       233 ~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  312 (362)
                      .-.|.++.+++.+                                                      .++++|..+ .++
T Consensus       201 ~~~d~~~~l~~~g------------------------------------------------------~~v~~~~~~-~~~  225 (446)
T PRK14353        201 YLTDIVAIARAEG------------------------------------------------------LRVAVVEAP-EDE  225 (446)
T ss_pred             eHHHHHHHHHHCC------------------------------------------------------CeEEEEecC-hhh
Confidence            1235556655432                                                      356777653 257


Q ss_pred             EEEeCCHHHHHHHhH
Q 018019          313 CVRLNSIQAFMDINR  327 (362)
Q Consensus       313 ~~rin~~~~Y~~~n~  327 (362)
                      |..|.++..|.+++.
T Consensus       226 ~~~I~t~~dl~~a~~  240 (446)
T PRK14353        226 VRGINSRAELAEAEA  240 (446)
T ss_pred             cccCCCHHHHHHHHH
Confidence            899999999988874

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.90  E-value=4.5e-22  Score=178.29  Aligned_cols=179  Identities=28%  Similarity=0.408  Sum_probs=135.5

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~   84 (362)
                      |||||||.|+||+    ..+||+|+|++|+|||+|++++|.++|+++|+|++++.  .+.+.+++..     .++.++.+
T Consensus         1 aiIlaaG~g~R~~----~~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~--~~~i~~~~~~-----~~~~~~~~   69 (229)
T cd02540           1 AVILAAGKGTRMK----SDLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHG--AEQVKKALAN-----PNVEFVLQ   69 (229)
T ss_pred             CEEEeCCCCccCC----CCCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhCC-----CCcEEEEC
Confidence            6999999999995    36899999999999999999999999999999999865  3467666653     45667766


Q ss_pred             CCCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCC
Q 018019           85 PEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (362)
Q Consensus        85 ~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (362)
                      +...|++++++.++..+.  .++|+++.||.  +...++..+++.|.+.++++++++.+..                 .+
T Consensus        70 ~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-----------------~p  132 (229)
T cd02540          70 EEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE-----------------DP  132 (229)
T ss_pred             CCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC-----------------CC
Confidence            667899999999999886  46799999996  5577899999999887777777655432                 14


Q ss_pred             CcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                      ..|+.+..++++++ ..+.+     ++. ....        .....++++|+|+|+++.|..+++.
T Consensus       133 ~~~~~~~~~~~~~v-~~~~e-----k~~-~~~~--------~~~~~~~~~giy~~~~~~~~~~l~~  183 (229)
T cd02540         133 TGYGRIIRDGNGKV-LRIVE-----EKD-ATEE--------EKAIREVNAGIYAFDAEFLFEALPK  183 (229)
T ss_pred             CCccEEEEcCCCCE-EEEEE-----CCC-CChH--------HHhhceEEeEEEEEEHHHHHHHHHH
Confidence            56777777776764 45543     211 0000        0113678999999999877666654

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.86  E-value=1.2e-20  Score=185.36  Aligned_cols=191  Identities=21%  Similarity=0.220  Sum_probs=132.6

Q ss_pred             ceEEEEeCCCCCCCCCCCCCC-CCeeeeeeCC-cchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcc-e
Q 018019            3 FQVVVLAGGTSKKLVPLVSKE-VPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH-V   79 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~-~pK~llpv~g-~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~-i   79 (362)
                      |.+||||||.||||+|| |.. +||+|+|+.| +|||+|+++.|...++++++|+++..+ ...+.+.+...   ... .
T Consensus         1 ~~~vILAgG~GtRl~Pl-S~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~-~~~~~~~l~~~---~~~~~   75 (468)
T TIGR01479         1 IIPVILAGGSGTRLWPL-SRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEH-RFIVAEQLREI---GKLAS   75 (468)
T ss_pred             CEEEEecCcccccCCcc-ccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHH-HHHHHHHHHHc---CCCcc
Confidence            57999999999999999 664 8999999977 899999999999999999999988432 22444445432   112 3


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhc----CCC-cEEEEeCCccc-C-CChHHHHHHH---HhcCCeEEEEEeeeccCCCcccC
Q 018019           80 EVATVPEDVGTAGALRAIAHHL----TAK-DVLVVSGDLVS-D-VPPGAVTAAH---RRHDAVVTAMICSVPVSGLSEAG  149 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i----~~~-~~lv~~~D~i~-~-~~l~~~l~~h---~~~~a~~t~l~~~~~~~~~~~~~  149 (362)
                      .++.++...|||+++..+...+    ..+ .++|++||.+. + .+|.++++.+   .+.++.+|+...+..        
T Consensus        76 ~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~--------  147 (468)
T TIGR01479        76 NIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTH--------  147 (468)
T ss_pred             eEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCC--------
Confidence            4677788899999988765555    323 48999999544 3 3588887765   344566666554321        


Q ss_pred             CCCCccCCCCCCcceEEEEcCC----C-cEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHH
Q 018019          150 SSGAKDKTKKPGRYNIIGMDPT----K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (362)
Q Consensus       150 ~~~~~~~~~~~~~~~~v~~d~~----~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~  224 (362)
                               ....||++..++.    + ..+..+.++++.+..    ...+      ...+.++|+|||+|+.+.|...+
T Consensus       148 ---------p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a----~~~l------~~g~~~wNsGif~~~~~~ll~~l  208 (468)
T TIGR01479       148 ---------PETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATA----QAYL------ESGDYYWNSGMFLFRASRYLAEL  208 (468)
T ss_pred             ---------CCCCceEEEeCCccCCCCceEEeEEEECCChHHH----HHHH------hcCCeEEEeeEEEEEHHHHHHHH
Confidence                     2468999998842    1 245677765443221    1111      11236899999999999887666


Q ss_pred             h
Q 018019          225 D  225 (362)
Q Consensus       225 ~  225 (362)
                      .
T Consensus       209 ~  209 (468)
T TIGR01479       209 K  209 (468)
T ss_pred             H
Confidence            4

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.86  E-value=7.1e-20  Score=165.92  Aligned_cols=186  Identities=18%  Similarity=0.261  Sum_probs=125.2

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.+||||+|.|+||    .   +|+|+|++|+|||+|+++.|..+|+++|+|++++    +.+.+++..     .++.
T Consensus         1 m~~~~iIlA~g~S~R~----~---~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~----~~i~~~~~~-----~~~~   64 (245)
T PRK05450          1 MKFLIIIPARYASTRL----P---GKPLADIGGKPMIVRVYERASKAGADRVVVATDD----ERIADAVEA-----FGGE   64 (245)
T ss_pred             CceEEEEecCCCCCCC----C---CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc----HHHHHHHHH-----cCCE
Confidence            8899999999999999    3   5999999999999999999999999999998863    356666643     2344


Q ss_pred             EEE--cCCCCCHHHHHHHHHHhc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCC
Q 018019           81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (362)
Q Consensus        81 i~~--~~~~~gt~~al~~~~~~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (362)
                      ++.  ++...|++.... +...+   ..+.++++.||.  +...++..+++.|+.+++++++++.+..  ++..      
T Consensus        65 v~~~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~--~~~~------  135 (245)
T PRK05450         65 VVMTSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIH--DAEE------  135 (245)
T ss_pred             EEECCCcCCCchHHHHH-HHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecC--CHHH------
Confidence            443  233467765443 33333   234588899995  5667899999998877667666655431  1111      


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeecCcccc-cccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELE-KDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~e-k~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                         ...++.++++ +|++|++ ..+.+++..+ +..         .+.-...+++.++|+|+|++++|..+.+
T Consensus       136 ---~~~~~~~~v~-~d~~g~v-~~~~e~~~~~~~~~---------~~~~~~~~~~~~~Giy~~~~~~l~~~~~  194 (245)
T PRK05450        136 ---AFNPNVVKVV-LDADGRA-LYFSRAPIPYGRDA---------FADSAPTPVYRHIGIYAYRRGFLRRFVS  194 (245)
T ss_pred             ---hcCcCCCEEE-eCCCCcE-EEecCCCCCCCCCc---------cccccCccccEEEEEEecCHHHHHHHHh
Confidence               1125566655 8887775 4565332111 000         0000013589999999999999987764

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.85  E-value=1.2e-19  Score=163.90  Aligned_cols=180  Identities=19%  Similarity=0.261  Sum_probs=123.9

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      +.+||||+|.|+||    .   ||+|+|++|+|||+|++++|..+ |+++|+|++++    +.+.+++..     .++.+
T Consensus         2 ~~~iIlA~g~s~R~----~---~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~----~~i~~~~~~-----~~~~~   65 (239)
T cd02517           2 VIVVIPARYASSRL----P---GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD----ERIADAVES-----FGGKV   65 (239)
T ss_pred             EEEEEecCCCCCCC----C---CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHHH-----cCCEE
Confidence            57899999999999    3   69999999999999999999998 89999998873    356666653     24555


Q ss_pred             EEcC--CCCCHHHHHHHHHHhcCC--CcEEEEeCC--cccCCChHHHHHHHHhc-CCeEEEEEeeeccCCCcccCCCCCc
Q 018019           82 ATVP--EDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSGAK  154 (362)
Q Consensus        82 ~~~~--~~~gt~~al~~~~~~i~~--~~~lv~~~D--~i~~~~l~~~l~~h~~~-~a~~t~l~~~~~~~~~~~~~~~~~~  154 (362)
                      +...  ...|+++ +..+...+..  +.+++++||  ++...++..+++.|... ++++++++.+..  ++...      
T Consensus        66 ~~~~~~~~~gt~~-~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~------  136 (239)
T cd02517          66 VMTSPDHPSGTDR-IAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPIS--DEEEL------  136 (239)
T ss_pred             EEcCcccCchhHH-HHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcC--CHHHc------
Confidence            5433  3467775 5556565653  669999999  56678899999988766 677887776542  11100      


Q ss_pred             cCCCCCCcceEEEEcCCCcEEEEeecCc--ccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          155 DKTKKPGRYNIIGMDPTKQFLLHIATGA--ELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~--~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                         .....++ +.++++|++ ..+.+++  +.+++            . ...+.+.++|+|+|++++|..+..
T Consensus       137 ---~~~~~~~-v~~~~~~~v-~~~~~~~~~~~~~~------------~-~~~~~~~~~Giy~~~~~~~~~~~~  191 (239)
T cd02517         137 ---FNPNVVK-VVLDKDGYA-LYFSRSPIPYPRDS------------S-EDFPYYKHIGIYAYRRDFLLRFAA  191 (239)
T ss_pred             ---cCCCCCE-EEECCCCCE-EEecCCCCCCCCCC------------C-CCCceeEEEEEEEECHHHHHHHHh
Confidence               0122333 456766764 4554211  10110            0 112468999999999999987754

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.82  E-value=1.8e-18  Score=155.96  Aligned_cols=181  Identities=21%  Similarity=0.293  Sum_probs=121.4

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++.|||||+|.|+||    .   +|+|+|++|+|||+|+++.+.++ ++++|+|++++    +.+.+++..+     ++
T Consensus         1 m~~~aiIlA~g~s~R~----~---~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~----~~i~~~~~~~-----~~   64 (238)
T PRK13368          1 MKVVVVIPARYGSSRL----P---GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD----QRIEDAVEAF-----GG   64 (238)
T ss_pred             CcEEEEEecCCCCCCC----C---CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh----HHHHHHHHHc-----CC
Confidence            7888999999999999    3   39999999999999999999998 89999999873    3566666542     34


Q ss_pred             EEEEcC--CCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCC-eEEEEEeeeccCCCcccCCCCCc
Q 018019           80 EVATVP--EDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA-VVTAMICSVPVSGLSEAGSSGAK  154 (362)
Q Consensus        80 ~i~~~~--~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a-~~t~l~~~~~~~~~~~~~~~~~~  154 (362)
                      .++...  ...|++ .+..+...+..+.|+++.||  ++.+.++..+++.|...+. ++++++...+.  +..       
T Consensus        65 ~v~~~~~~~~~g~~-~~~~a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~-------  134 (238)
T PRK13368         65 KVVMTSDDHLSGTD-RLAEVMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPIST--EEE-------  134 (238)
T ss_pred             eEEecCccCCCccH-HHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCC--HHH-------
Confidence            444432  335666 46667666655679999999  6878899999999876543 55555543321  000       


Q ss_pred             cCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHH
Q 018019          155 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (362)
Q Consensus       155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~  223 (362)
                        ...+..+++ .++++|++ ..+.+     ++...+++     +  ...+.+.++|+|+|++++|..+
T Consensus       135 --~~~p~~~~~-~~~~~g~v-~~~~~-----~~~~~~~~-----~--~~~~~~~n~giy~~~~~~l~~~  187 (238)
T PRK13368        135 --FESPNVVKV-VVDKNGDA-LYFSR-----SPIPSRRD-----G--ESARYLKHVGIYAFRRDVLQQF  187 (238)
T ss_pred             --hcCcCCCEE-EECCCCCE-EEeeC-----CCCCCCCC-----C--CCCceeEEEEEEEeCHHHHHHH
Confidence              001333344 44566764 45542     11100000     0  0113578999999999999865

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.74  E-value=6.1e-17  Score=158.05  Aligned_cols=194  Identities=20%  Similarity=0.202  Sum_probs=130.1

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCC-CCeeeeeeCC-cchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcc
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKE-VPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~-~pK~llpv~g-~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~   78 (362)
                      |.|.+||||||.||||+|+ +.. .||+|+|++| +|||+++++++...++.+.+|+++..+ .+.+.+.+... . ...
T Consensus         4 ~~~~~vIlaGG~GtRlwPl-S~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~-~~~v~~ql~~~-~-~~~   79 (478)
T PRK15460          4 SKLYPVVMAGGSGSRLWPL-SRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQH-RFIVAEQLRQL-N-KLT   79 (478)
T ss_pred             CceEEEEECCCCccccccC-CCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHH-HHHHHHHHHhc-C-Ccc
Confidence            6789999999999999999 554 7999999966 699999999999888888878887543 34555555431 0 012


Q ss_pred             eEEEEcCCCCCHHHHHHHHHHhcC------CCcEEEEeCCccc-CC-ChHHHHHHHH---hcCCeEEEEEeeeccCCCcc
Q 018019           79 VEVATVPEDVGTAGALRAIAHHLT------AKDVLVVSGDLVS-DV-PPGAVTAAHR---RHDAVVTAMICSVPVSGLSE  147 (362)
Q Consensus        79 i~i~~~~~~~gt~~al~~~~~~i~------~~~~lv~~~D~i~-~~-~l~~~l~~h~---~~~a~~t~l~~~~~~~~~~~  147 (362)
                      ..++.++..++|+.++..+...+.      +.-++|+++|.+. +. .|.+.++...   +.+.-+|+-..+..      
T Consensus        80 ~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~------  153 (478)
T PRK15460         80 ENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDL------  153 (478)
T ss_pred             ccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCC------
Confidence            357778888999988876644442      2347899999654 42 2444444332   23555555443321      


Q ss_pred             cCCCCCccCCCCCCcceEEEEcCC-------C-cEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHH
Q 018019          148 AGSSGAKDKTKKPGRYNIIGMDPT-------K-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSV  219 (362)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~v~~d~~-------~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~v  219 (362)
                                 ..+.||++..++.       + ..+..|.++++.+..    +.++.      -...++|+|||+|+.++
T Consensus       154 -----------PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA----~~yl~------~G~y~WNsGiF~~~a~~  212 (478)
T PRK15460        154 -----------PETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETA----QAYVA------SGEYYWNSGMFLFRAGR  212 (478)
T ss_pred             -----------CCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHH----HHHHH------cCCEEEecceeheeHHH
Confidence                       2568999987642       1 245677766655432    22221      13468999999999988


Q ss_pred             HHHHHh
Q 018019          220 LQEVLD  225 (362)
Q Consensus       220 l~~~~~  225 (362)
                      |..-++
T Consensus       213 ~l~~~~  218 (478)
T PRK15460        213 YLEELK  218 (478)
T ss_pred             HHHHHH
Confidence            865554

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.74  E-value=8.2e-17  Score=145.13  Aligned_cols=194  Identities=24%  Similarity=0.260  Sum_probs=132.7

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCC-cchHHHHHHHHHh-CCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g-~plI~~~l~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |..||||||.||||+||+...+||+++.+.| +.|+..++.++.. .+.++++|+|+..+. ..+.+.+.+.......- 
T Consensus         2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~-f~v~eql~e~~~~~~~~-   79 (333)
T COG0836           2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYR-FIVKEQLPEIDIENAAG-   79 (333)
T ss_pred             ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHH-HHHHHHHhhhhhccccc-
Confidence            6899999999999999998999999999965 8999999999988 678999999995543 45555555321111122 


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcCC----CcEEEEeCCcccCC--ChHHHHHHHH---hcCCeEEEEEeeeccCCCcccCCC
Q 018019           81 VATVPEDVGTAGALRAIAHHLTA----KDVLVVSGDLVSDV--PPGAVTAAHR---RHDAVVTAMICSVPVSGLSEAGSS  151 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~----~~~lv~~~D~i~~~--~l~~~l~~h~---~~~a~~t~l~~~~~~~~~~~~~~~  151 (362)
                      ++.++..+.|+.|+..+.-.+..    .-++|+++|++...  .+.+.++...   +.+.-+|....+..          
T Consensus        80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~----------  149 (333)
T COG0836          80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTR----------  149 (333)
T ss_pred             eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCC----------
Confidence            77778889999999877544432    23889999975543  2544444332   34555555443321          


Q ss_pred             CCccCCCCCCcceEEEEcC-----CCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          152 GAKDKTKKPGRYNIIGMDP-----TKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       152 ~~~~~~~~~~~~~~v~~d~-----~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                             ..+.||+|...+     .+..+-.+.++++.+..    ++.+.      -...++|+|+|+|+..++..-++
T Consensus       150 -------PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA----~~yv~------sG~y~WNSGmF~Fra~~~l~e~~  211 (333)
T COG0836         150 -------PETGYGYIETGESIAENGVYKVDRFVEKPDLETA----KKYVE------SGEYLWNSGMFLFRASVFLEELK  211 (333)
T ss_pred             -------CccCcceeecCcccccCCceEeeeeeeCCCHHHH----HHHHH------cCceEeeccceEEEHHHHHHHHH
Confidence                   256899998754     34456677766655442    22222      23479999999999988754443

>PLN02917 CMP-KDO synthetase

Probab=99.71  E-value=2.2e-15  Score=139.41  Aligned_cols=200  Identities=13%  Similarity=0.128  Sum_probs=126.2

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCC-CeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNI-KDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++.+||+|+|.|+||    .   +|+|+|++|+|||+|+++.+..++. +.|+|.+.    .+.+.+++..     .++
T Consensus        46 ~~i~aIIpA~G~SsR~----~---~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~----~e~I~~~~~~-----~~v  109 (293)
T PLN02917         46 SRVVGIIPARFASSRF----E---GKPLVHILGKPMIQRTWERAKLATTLDHIVVATD----DERIAECCRG-----FGA  109 (293)
T ss_pred             CcEEEEEecCCCCCCC----C---CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECC----hHHHHHHHHH-----cCC
Confidence            6678999999999999    3   3999999999999999999998764 55444433    2466666653     245


Q ss_pred             EEEEc--CCCCCHHHHHHHHHHhcC--CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCC
Q 018019           80 EVATV--PEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (362)
Q Consensus        80 ~i~~~--~~~~gt~~al~~~~~~i~--~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (362)
                      .++..  ....||+++ ..+.+.+.  .+.++++.||  ++....+..+++.+.+. ++++++..-.+. ++        
T Consensus       110 ~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~-~~--------  178 (293)
T PLN02917        110 DVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSL-KP--------  178 (293)
T ss_pred             EEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeec-CH--------
Confidence            55543  334677765 56777774  3568999999  68888899999988654 333332221111 11        


Q ss_pred             ccCCCCCCcceEEE--EcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccc
Q 018019          154 KDKTKKPGRYNIIG--MDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQ  231 (362)
Q Consensus       154 ~~~~~~~~~~~~v~--~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~  231 (362)
                          +++..|+.+.  .|++|+.+++.+.-...+++....          .-.-.+.++|||+|+++.|..+ ..-..-.
T Consensus       179 ----~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~----------~~~i~~~n~Giy~f~~~~L~~l-~~l~~~n  243 (293)
T PLN02917        179 ----EDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVN----------PQFPYLLHLGIQSYDAKFLKIY-PELPPTP  243 (293)
T ss_pred             ----HHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccc----------cccceEEEEEEEEeCHHHHHHH-HcCCCCc
Confidence                1256677774  687787554432211112221000          0112578999999999999855 4322223


Q ss_pred             cchhhhhhHHH
Q 018019          232 SLKQDVLPYLV  242 (362)
Q Consensus       232 s~~~d~ip~l~  242 (362)
                      .-++..|+.|+
T Consensus       244 ~e~e~yLtdl~  254 (293)
T PLN02917        244 LQLEEDLEQLK  254 (293)
T ss_pred             ccchhccHHHH
Confidence            34566677765

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.69  E-value=4.5e-16  Score=134.92  Aligned_cols=108  Identities=23%  Similarity=0.374  Sum_probs=87.8

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |+|||||||.|+||.|    +.||||+.++||++|+|++++|.++|+++++||+.... .+-+.++++.+   .+...++
T Consensus         4 ~kavILAAG~GsRlg~----~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~-~~lve~~l~~~---~~~~~iv   75 (239)
T COG1213           4 MKAVILAAGFGSRLGP----DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYR-ADLVEEFLKKY---PFNAKIV   75 (239)
T ss_pred             eeEEEEecccccccCC----CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccch-HHHHHHHHhcC---CcceEEE
Confidence            7899999999999954    79999999999999999999999999999999994332 45666766653   2356666


Q ss_pred             EcCC--CCCHHHHHHHHHHhcCCCcEEEEeCCcccCCCh
Q 018019           83 TVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPP  119 (362)
Q Consensus        83 ~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l  119 (362)
                      +.+.  ..+++.+|..+.+++. +.|++++||+++...+
T Consensus        76 ~N~~y~ktN~~~Sl~~akd~~~-~~fii~~sD~vye~~~  113 (239)
T COG1213          76 INSDYEKTNTGYSLLLAKDYMD-GRFILVMSDHVYEPSI  113 (239)
T ss_pred             eCCCcccCCceeEEeeehhhhc-CcEEEEeCCEeecHHH
Confidence            6544  3566899999999985 5699999999887553

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=99.68  E-value=3e-16  Score=132.65  Aligned_cols=119  Identities=28%  Similarity=0.437  Sum_probs=96.6

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~   84 (362)
                      |||||||.|+||      +.||+|+|++|+|||+|+++.+..+++++|+|++++.    .+..++.     +.++.++..
T Consensus         1 ~vILa~G~s~Rm------g~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~~----~~~~~~~-----~~~~~~v~~   65 (160)
T PF12804_consen    1 AVILAAGKSSRM------GGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGEE----EIYEYLE-----RYGIKVVVD   65 (160)
T ss_dssp             EEEEESSSCGGG------TSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEESTH----HHHHHHT-----TTTSEEEE-
T ss_pred             CEEECCcCcccC------CCCccceeECCccHHHHHHHHhhccCCceEEEecChH----HHHHHHh-----ccCceEEEe
Confidence            799999999999      3499999999999999999999999999999999852    4444443     346777765


Q ss_pred             C-CCCCHHHHHHHHHHhc-CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEe
Q 018019           85 P-EDVGTAGALRAIAHHL-TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMIC  138 (362)
Q Consensus        85 ~-~~~gt~~al~~~~~~i-~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~  138 (362)
                      + ...|++++++.+...+ ..++|++++||+  +....+..+++.+.+.+++++++..
T Consensus        66 ~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~  123 (160)
T PF12804_consen   66 PEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF  123 (160)
T ss_dssp             STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             ccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence            4 3589999999999988 678899999997  4466789999998877777766543

...

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=99.65  E-value=3.6e-15  Score=128.72  Aligned_cols=122  Identities=21%  Similarity=0.269  Sum_probs=94.1

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |.|||||||+|+||.     ..||+|+|++|+|||+|+++++..+++++|+|++++.  .+.+..++...     ...+.
T Consensus         1 m~aIILAgG~gsRmg-----~~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~--~~~~~~~l~~~-----~~~~~   68 (183)
T TIGR00454         1 MDALIMAGGKGTRLG-----GVEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPH--TPKTEEYINSA-----YKDYK   68 (183)
T ss_pred             CeEEEECCccCccCC-----CCCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCC--HHHHHHHHhhc-----CcEEE
Confidence            579999999999993     2789999999999999999999999999999999864  24566666542     12222


Q ss_pred             EcCCCCCHHHHHHHHHHhcC-CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEE
Q 018019           83 TVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMI  137 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~  137 (362)
                       .....|...++..+++.+. .++|+++.||  ++....+..+++.+...+.....++
T Consensus        69 -~~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~  125 (183)
T TIGR00454        69 -NASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVM  125 (183)
T ss_pred             -ecCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence             2456788888888877543 5789999999  4678889999998876554444433

At this time this gene appears to be present only in Archea

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=99.64  E-value=2e-14  Score=129.47  Aligned_cols=184  Identities=16%  Similarity=0.195  Sum_probs=116.9

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~   84 (362)
                      +||+|+|.|+||    .   +|+|++++|+|||.|+++++..+++++|+|++..    +.+.+++..     .++.++..
T Consensus         2 ~iIpA~g~s~R~----~---~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~----~~i~~~~~~-----~g~~~v~~   65 (238)
T TIGR00466         2 VIIPARLASSRL----P---GKPLEDIFGKPMIVHVAENANESGADRCIVATDD----ESVAQTCQK-----FGIEVCMT   65 (238)
T ss_pred             EEEecCCCCCCC----C---CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH----HHHHHHHHH-----cCCEEEEe
Confidence            799999999999    3   5999999999999999999998899999999873    355555543     24444442


Q ss_pred             C--CCCCHHHHHHHHHHhc---CCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCC
Q 018019           85 P--EDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (362)
Q Consensus        85 ~--~~~gt~~al~~~~~~i---~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (362)
                      .  ...|+ +.+..+...+   ..+.++++.||  ++.+..+..+++.+.+.+.+++.+..+..  ++.+..        
T Consensus        66 ~~~~~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~--d~~~~~--------  134 (238)
T TIGR00466        66 SKHHNSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIH--DAEEAF--------  134 (238)
T ss_pred             CCCCCChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecC--CHHHcc--------
Confidence            2  22343 3444444433   23457889999  68888899999988655566665555432  221111        


Q ss_pred             CCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHh--hcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILR--AVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~--~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                        ..+...++.|.+|+.+++.+.      .+...++.++  ..|..  ...+.+.|||.|+++.|..|..
T Consensus       135 --~p~~vk~v~~~~g~alyfsr~------~ip~~R~~~~~~~tpq~--~~~~~h~Giy~~~~~~L~~~~~  194 (238)
T TIGR00466       135 --NPNAVKVVLDSQGYALYFSRS------LIPFDRDFFAKRQTPVG--DNLLRHIGIYGYRAGFIEEYVA  194 (238)
T ss_pred             --CCCceEEEeCCCCeEEEecCC------CCCCCCCcccccccccc--cceeEEEEEEeCCHHHHHHHHh
Confidence              112233455777766544332      1111111111  11211  1257799999999999998865

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=7e-16  Score=128.35  Aligned_cols=104  Identities=23%  Similarity=0.410  Sum_probs=86.5

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |.|||||||.||||.|| |..+||+|+.|.|+|||++.++.|.++||++|+||+++..  +++ +++++    +.++.++
T Consensus         1 ~nAIIlAAG~gsR~~pl-T~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlk--E~F-eYLkd----Ky~vtLv   72 (231)
T COG4750           1 MNAIILAAGLGSRFVPL-TQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLK--EQF-EYLKD----KYDVTLV   72 (231)
T ss_pred             CceEEEecccccccccc-cccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehH--HHH-HHHHH----hcCeEEE
Confidence            57999999999999999 9999999999999999999999999999999999999652  233 55654    4578888


Q ss_pred             EcCCC--CCHHHHHHHHHHhcCCCcEEEEeCCcccC
Q 018019           83 TVPED--VGTAGALRAIAHHLTAKDVLVVSGDLVSD  116 (362)
Q Consensus        83 ~~~~~--~gt~~al~~~~~~i~~~~~lv~~~D~i~~  116 (362)
                      ..+..  ....-++..+++++.  +..|+.+|....
T Consensus        73 yN~kY~~yNn~ySlyla~d~l~--ntYiidsDnyl~  106 (231)
T COG4750          73 YNPKYREYNNIYSLYLARDFLN--NTYIIDSDNYLT  106 (231)
T ss_pred             eCchHHhhhhHHHHHHHHHHhc--ccEEeccchHhh
Confidence            76653  566788999999985  456779996543

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=99.57  E-value=3.8e-14  Score=117.29  Aligned_cols=110  Identities=26%  Similarity=0.424  Sum_probs=89.5

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |.+||+|||+|+||.    . .-|||++++|||||+|+++.|.+ .+++++++++.+.  ..++.++.++     +++++
T Consensus         1 m~~iiMAGGrGtRmg----~-~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~t--p~t~~~~~~~-----gv~vi   67 (177)
T COG2266           1 MMAIIMAGGRGTRMG----R-PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHT--PKTKEYLESV-----GVKVI   67 (177)
T ss_pred             CceEEecCCcccccC----C-CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCC--HhHHHHHHhc-----CceEE
Confidence            569999999999994    2 34999999999999999999988 7899999998663  4677777753     56676


Q ss_pred             EcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHH
Q 018019           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHR  127 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~  127 (362)
                      ..+ ..|-..-++.+.+.+. .++|++++|+  +.+..+..+++.+.
T Consensus        68 ~tp-G~GYv~Dl~~al~~l~-~P~lvvsaDLp~l~~~~i~~vi~~~~  112 (177)
T COG2266          68 ETP-GEGYVEDLRFALESLG-TPILVVSADLPFLNPSIIDSVIDAAA  112 (177)
T ss_pred             EcC-CCChHHHHHHHHHhcC-CceEEEecccccCCHHHHHHHHHHHh
Confidence            543 4678899999999985 4999999995  44566788888776

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=1e-13  Score=118.81  Aligned_cols=188  Identities=19%  Similarity=0.215  Sum_probs=131.9

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.+||+|.-.+|||    ..   |||-.|+|+|||.|+.++..++|.++|+|.+.+    +++.+.+..     .|.+
T Consensus         2 ~~~~viIPAR~~STRL----pg---KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd----e~I~~av~~-----~G~~   65 (247)
T COG1212           2 MKFVVIIPARLASTRL----PG---KPLADIGGKPMIVRVAERALKSGADRVVVATDD----ERIAEAVQA-----FGGE   65 (247)
T ss_pred             CceEEEEecchhcccC----CC---CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC----HHHHHHHHH-----hCCE
Confidence            7788999999999999    44   999999999999999999999999999999984    467777764     3566


Q ss_pred             EEEcCCCCCHH-HHHHHHHHhcC-C--CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCc
Q 018019           81 VATVPEDVGTA-GALRAIAHHLT-A--KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAK  154 (362)
Q Consensus        81 i~~~~~~~gt~-~al~~~~~~i~-~--~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~  154 (362)
                      .+.......+| +.+.++.+.+. .  +.++-+.||  +|.+..+..+++...+.+++|..+..+..  ++.+..     
T Consensus        66 avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~--~~ee~~-----  138 (247)
T COG1212          66 AVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKIT--DEEEAF-----  138 (247)
T ss_pred             EEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecC--CHHHhc-----
Confidence            66655444333 67777766664 2  346667799  67778888898888877777655554432  233321     


Q ss_pred             cCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc
Q 018019          155 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD  228 (362)
Q Consensus       155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~  228 (362)
                           ..+-.-++.|.+|+.|++.++......+      .  .    .....+...|||.|++.+|..|..-.+
T Consensus       139 -----nPN~VKvV~d~~g~ALYFSRs~iP~~rd------~--~----~~~p~l~HIGIYayr~~~L~~f~~~~p  195 (247)
T COG1212         139 -----NPNVVKVVLDKEGYALYFSRAPIPYGRD------N--F----GGTPFLRHIGIYAYRAGFLERFVALKP  195 (247)
T ss_pred             -----CCCcEEEEEcCCCcEEEEEcCCCCCccc------c--c----CCcchhheeehHHhHHHHHHHHHhcCC
Confidence                 2233446788888887666542211110      0  0    002367789999999999998876443

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.56  E-value=3.4e-13  Score=119.84  Aligned_cols=115  Identities=23%  Similarity=0.304  Sum_probs=86.2

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~   83 (362)
                      |||||||.|+||    ....||+|++++|+|||+|+++++..+ ++++++|++++... +.+...+..    ...+.++.
T Consensus         2 aiIlAaG~s~R~----~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~-~~~~~~~~~----~~~~~~~~   72 (217)
T TIGR00453         2 AVIPAAGRGTRF----GSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQ-EFFQKYLVA----RAVPKIVA   72 (217)
T ss_pred             EEEEcCcccccC----CCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHH-HHHHHHhhc----CCcEEEeC
Confidence            799999999999    445799999999999999999999998 79999999985321 233332321    11233332


Q ss_pred             cCCCCCHHHHHHHHHHhc-CCCcEEEEeCC--cccCCChHHHHHHHHhcC
Q 018019           84 VPEDVGTAGALRAIAHHL-TAKDVLVVSGD--LVSDVPPGAVTAAHRRHD  130 (362)
Q Consensus        84 ~~~~~gt~~al~~~~~~i-~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~  130 (362)
                        ...+..++++.++..+ ..+.++++.||  ++....+..+++.+.+.+
T Consensus        73 --~~~~~~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~  120 (217)
T TIGR00453        73 --GGDTRQDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKAG  120 (217)
T ss_pred             --CCchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence              2234668899888877 45679999999  577888999999886643

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=99.56  E-value=6.4e-14  Score=121.05  Aligned_cols=118  Identities=27%  Similarity=0.345  Sum_probs=90.0

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      +.+||||||.|+||.      .||+|+|++|+|||+|+++.+...++++|+|+++...  ..+.+++.     ..++.++
T Consensus         1 ~~~vIlAgG~s~R~g------~~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~--~~~~~~~~-----~~~~~~~   67 (186)
T cd04182           1 IAAIILAAGRSSRMG------GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEA--DAVRAALA-----GLPVVVV   67 (186)
T ss_pred             CeEEEECCCCCCCCC------CCceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcH--HHHHHHhc-----CCCeEEE
Confidence            358999999999993      2899999999999999999999989999999998542  23333332     2345444


Q ss_pred             EcC-CCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeE
Q 018019           83 TVP-EDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV  133 (362)
Q Consensus        83 ~~~-~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~  133 (362)
                      ..+ ...|++++++.+++.+.  .+.++++.||+  +....+..+++.+...++++
T Consensus        68 ~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~  123 (186)
T cd04182          68 INPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGI  123 (186)
T ss_pred             eCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence            433 34799999999988886  56799999995  66677888888876555443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=99.53  E-value=1.2e-13  Score=119.76  Aligned_cols=120  Identities=16%  Similarity=0.245  Sum_probs=90.5

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV   84 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~   84 (362)
                      +||||||.|+||      +.||+|+|++|+|||+|+++.+.++++++|+|++++..  +.+...+.    ...++.++..
T Consensus         2 ~iIla~G~s~R~------g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~--~~~~~~~~----~~~~v~~v~~   69 (188)
T TIGR03310         2 AIILAAGLSSRM------GQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEA--DELVALLA----NHSNITLVHN   69 (188)
T ss_pred             eEEECCCCcccC------CCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcH--HHHHHHhc----cCCCeEEEEC
Confidence            799999999999      35899999999999999999999889999999998653  22222222    1245666654


Q ss_pred             CC-CCCHHHHHHHHHH-hcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEE
Q 018019           85 PE-DVGTAGALRAIAH-HLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAM  136 (362)
Q Consensus        85 ~~-~~gt~~al~~~~~-~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l  136 (362)
                      .. ..|++++++.+++ ....+.++++.||.  +....+..+++.+...+..+++.
T Consensus        70 ~~~~~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~  125 (188)
T TIGR03310        70 PQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP  125 (188)
T ss_pred             cChhcCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence            33 3688999998887 23346799999995  66677899998887666555443

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=99.51  E-value=4.1e-13  Score=119.68  Aligned_cols=123  Identities=13%  Similarity=0.161  Sum_probs=90.7

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      +.+||||||.|+||    .   +|+|+|++|+|||+|+++.+..++ +++|+|++..    +.+.+++...   ...+.+
T Consensus         2 ~~~iIlA~G~s~R~----~---~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~----~~i~~~~~~~---~~~~~~   67 (223)
T cd02513           2 ILAIIPARGGSKGI----P---GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDD----EEIAEVARKY---GAEVPF   67 (223)
T ss_pred             eEEEEecCCCCCCC----C---CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHHHh---CCCcee
Confidence            57999999999999    3   399999999999999999999887 7888887652    2455554432   111122


Q ss_pred             EEc----CCCCCHHHHHHHHHHhcCC-----CcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 018019           82 ATV----PEDVGTAGALRAIAHHLTA-----KDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (362)
Q Consensus        82 ~~~----~~~~gt~~al~~~~~~i~~-----~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (362)
                      ...    .+..|+.++++.+++.+..     +.++++.||  ++...++..+++.+...+++.++.+..
T Consensus        68 ~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~  136 (223)
T cd02513          68 LRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE  136 (223)
T ss_pred             eCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            221    2335788999988876642     579999999  488889999999998777775555443

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=99.50  E-value=6.6e-13  Score=117.98  Aligned_cols=123  Identities=20%  Similarity=0.279  Sum_probs=88.3

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      .+||||||.|+||    ....||+|+|++|+|||+|+++++..++ +++|+|++++...  .....+.... ....+.++
T Consensus         2 ~~vILAaG~s~R~----~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~--~~~~~~~~~~-~~~~~~~~   74 (218)
T cd02516           2 AAIILAAGSGSRM----GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDI--DLAKELAKYG-LSKVVKIV   74 (218)
T ss_pred             EEEEECCcccccC----CCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHH--HHHHHHHhcc-cCCCeEEE
Confidence            5899999999999    4347999999999999999999999876 8999999885421  2222221111 11233333


Q ss_pred             EcCCCCCHHHHHHHHHHhcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 018019           83 TVPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~  135 (362)
                        ....+..++++.+++.+.   .+.++++.||  ++....+..+++.+.+.++.+++
T Consensus        75 --~~~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~  130 (218)
T cd02516          75 --EGGATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPA  130 (218)
T ss_pred             --CCchHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEE
Confidence              223456788999988873   4568888999  67778899999988766543333

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=99.49  E-value=4e-13  Score=120.53  Aligned_cols=128  Identities=18%  Similarity=0.288  Sum_probs=92.5

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |.+.+||||||.|+||    ..+.||+|++++|+|||.|+++++..++ +++|+|+++.... ..+.+++..+......+
T Consensus         1 ~~~~~iIlAaG~g~R~----g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~-~~~~~~~~~~~~~~~~~   75 (230)
T PRK13385          1 MNYELIFLAAGQGKRM----NAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQER-KHVQDLMKQLNVADQRV   75 (230)
T ss_pred             CceEEEEECCeecccc----CCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhH-HHHHHHHHhcCcCCCce
Confidence            7788999999999999    6678999999999999999999998764 8999999875321 23444444321111123


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhcCCC-cEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 018019           80 EVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~~-~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~  135 (362)
                      .++  ....+..++++.+++.+... .++++.||  ++....+..+++.+.+.++.+.+
T Consensus        76 ~~v--~~g~~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~  132 (230)
T PRK13385         76 EVV--KGGTERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICA  132 (230)
T ss_pred             EEc--CCCchHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEE
Confidence            333  33345568999998877543 46777899  67778899999988776654444

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=99.48  E-value=5.9e-13  Score=119.18  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=89.8

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |.+.+||||||.|+||    +...||+|++++|+|||+|+++++..++ +++|+|+++.... +.+......   ....+
T Consensus         2 ~~~~~iILAaG~s~R~----g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~-~~~~~~~~~---~~~~~   73 (227)
T PRK00155          2 MMVYAIIPAAGKGSRM----GADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDR-PDFAELLLA---KDPKV   73 (227)
T ss_pred             CceEEEEEcCcccccc----CCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHH-HHHHHHhhc---cCCce
Confidence            6788999999999999    6668999999999999999999999865 8999999985421 122221111   10123


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhcC-CCcEEEEeCC--cccCCChHHHHHHHHhcCC
Q 018019           80 EVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a  131 (362)
                      .++  ....+.+++++.+++.+. .+.++++.||  ++....+..+++.+...++
T Consensus        74 ~~~--~~~~~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~  126 (227)
T PRK00155         74 TVV--AGGAERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETGA  126 (227)
T ss_pred             EEe--CCcchHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCCC
Confidence            333  233467899999988873 4568888899  6778889999998876643

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=99.47  E-value=4e-13  Score=115.91  Aligned_cols=113  Identities=27%  Similarity=0.341  Sum_probs=86.8

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      +.+||||||.|+||    .  .||+++|++|+|||+|+++.+... +++|+|+++....  .    ..     ..++.++
T Consensus         1 ~~~iILAgG~s~Rm----g--~~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~--~----~~-----~~~~~~v   62 (181)
T cd02503           1 ITGVILAGGKSRRM----G--GDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQE--R----YA-----LLGVPVI   62 (181)
T ss_pred             CcEEEECCCccccC----C--CCceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChH--H----Hh-----hcCCcEe
Confidence            46899999999999    3  389999999999999999999887 8999999985421  1    11     1245555


Q ss_pred             EcC-CCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEE
Q 018019           83 TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVT  134 (362)
Q Consensus        83 ~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t  134 (362)
                      ..+ ...|+.++++.++..+..+.++++.||+  +....+..+++.+ ..+.+++
T Consensus        63 ~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~  116 (181)
T cd02503          63 PDEPPGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA-EEGADAV  116 (181)
T ss_pred             eCCCCCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEE
Confidence            433 3578999999998888667899999995  6666788888776 3344443

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=99.45  E-value=1.3e-12  Score=113.69  Aligned_cols=120  Identities=19%  Similarity=0.267  Sum_probs=86.9

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (362)
Q Consensus         4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~   83 (362)
                      .+||||||.|+||      +.+|.|++++|+|||+|+++.+...++++++|+++...  +.+ .++........++.++.
T Consensus         2 ~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~--~~~-~~~~~~~~~~~~~~~~~   72 (190)
T TIGR03202         2 VAIYLAAGQSRRM------GENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKY--AHL-SWLDPYLLADERIMLVC   72 (190)
T ss_pred             eEEEEcCCccccC------CCCceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCcc--chh-hhhhHhhhcCCCeEEEE
Confidence            5899999999999      34799999999999999999888889999999998542  111 11221111123455554


Q ss_pred             cCC-CCCHHHHHHHHHHhcC---CCcEEEEeCC--cccCCChHHHHHHHHhcCCe
Q 018019           84 VPE-DVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (362)
Q Consensus        84 ~~~-~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~  132 (362)
                      ..+ ..|.+.+++.+++.+.   .+.++++.||  ++....+..+++........
T Consensus        73 ~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~  127 (190)
T TIGR03202        73 CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDD  127 (190)
T ss_pred             CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence            333 4688899999988763   4679999999  57677788888876554443

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.45  E-value=9.2e-13  Score=119.17  Aligned_cols=121  Identities=22%  Similarity=0.317  Sum_probs=88.3

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      +.+||||||.|+||    +...||++++++|+|||+|+++.+... ++++|+|+++.... +.+.+.+..     .+..+
T Consensus        25 i~aIILAAG~gsRm----g~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~-~~~~~~~~~-----~~~~i   94 (252)
T PLN02728         25 VSVILLAGGVGKRM----GANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYR-DVFEEAVEN-----IDVPL   94 (252)
T ss_pred             eEEEEEcccccccC----CCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHH-HHHHHHHHh-----cCCce
Confidence            56899999999999    667899999999999999999999884 89999999985421 233333332     12223


Q ss_pred             EEcCCCCCHHHHHHHHHHhcCCCcEEEEeCC----cccCCChHHHHHHHHhcCCeE
Q 018019           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGD----LVSDVPPGAVTAAHRRHDAVV  133 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D----~i~~~~l~~~l~~h~~~~a~~  133 (362)
                      .......+..++++.++..+..+..+|+.+|    ++....+..+++...+.++.+
T Consensus        95 ~~v~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i  150 (252)
T PLN02728         95 KFALPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAAV  150 (252)
T ss_pred             EEcCCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEE
Confidence            2233445667889999888754455667777    566667888888887776543

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=99.45  E-value=1.1e-12  Score=114.45  Aligned_cols=114  Identities=23%  Similarity=0.304  Sum_probs=85.8

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |.+.+||||||.|+||    . +.||+++|++|+|||+|+++.+. .++++|+|+++...  +.    +..     .++.
T Consensus         2 ~~~~~vILA~G~s~Rm----~-~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~--~~----~~~-----~~~~   64 (193)
T PRK00317          2 PPITGVILAGGRSRRM----G-GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNL--AR----YAA-----FGLP   64 (193)
T ss_pred             CCceEEEEcCCCcccC----C-CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCCh--HH----HHh-----cCCc
Confidence            5789999999999999    3 47899999999999999999998 77999999987431  11    111     1334


Q ss_pred             EEEcCC--CCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCC
Q 018019           81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDA  131 (362)
Q Consensus        81 i~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a  131 (362)
                      ++....  ..|+.++++.+++....+.++++.||.  +....+..+++.+.+.+.
T Consensus        65 ~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~  119 (193)
T PRK00317         65 VIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDA  119 (193)
T ss_pred             EEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCC
Confidence            443322  368889999888876667799999994  666678888887654433

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=99.42  E-value=2.3e-12  Score=111.68  Aligned_cols=118  Identities=21%  Similarity=0.291  Sum_probs=86.9

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      +.+||||||.|+||    . .+||+|++++|+|||+|+++.+.. ++++|+|++....   .  .+...    ..++.++
T Consensus         1 ~~~iILAgG~s~Rm----g-~~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~---~--~~~~~----~~~~~~i   65 (186)
T TIGR02665         1 ISGVILAGGRARRM----G-GRDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNP---E--RYAQA----GFGLPVV   65 (186)
T ss_pred             CeEEEEcCCccccC----C-CCCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCH---H--HHhhc----cCCCcEE
Confidence            35899999999999    3 359999999999999999999975 5899998887431   1  11111    1234444


Q ss_pred             Ec--CCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEE
Q 018019           83 TV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus        83 ~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~  135 (362)
                      ..  +...|++++++.+++.+..+.++++.||.  +....+..+++.+.+.++.+++
T Consensus        66 ~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  122 (186)
T TIGR02665        66 PDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEASDADIAV  122 (186)
T ss_pred             ecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence            43  23489999999999888667899999994  6666678888876554444433

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.42  E-value=2.6e-12  Score=112.74  Aligned_cols=112  Identities=18%  Similarity=0.181  Sum_probs=85.4

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.+||||||.|+||      +.+|++++++|+|||+|+++.+... +++|+|+++..   +......      ..++.
T Consensus         6 ~~~~~vILAgG~s~Rm------g~~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~---~~~~~~~------~~~~~   69 (200)
T PRK02726          6 NNLVALILAGGKSSRM------GQDKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP---ERYQSLL------PPGCH   69 (200)
T ss_pred             CCceEEEEcCCCcccC------CCCceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH---HHHHhhc------cCCCe
Confidence            5678999999999999      3479999999999999999999754 78899988732   1222211      12355


Q ss_pred             EEEcC-CCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHh
Q 018019           81 VATVP-EDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRR  128 (362)
Q Consensus        81 i~~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~  128 (362)
                      ++... ...|...+++.++..+..+.++|+.||  ++....+..+++.+..
T Consensus        70 ~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726         70 WLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             EecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence            55433 347999999999998876789999999  4667778888887643

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=99.39  E-value=5.3e-12  Score=120.51  Aligned_cols=125  Identities=22%  Similarity=0.320  Sum_probs=91.6

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcc-
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLH-   78 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~-   78 (362)
                      |++.+||||||.|+||    +...||+++|++|+|||+|+++.+..++ +++|+|++++... +....+..     ... 
T Consensus         4 m~v~aIILAAG~GsRm----g~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~-~~~~~~~~-----~~~~   73 (378)
T PRK09382          4 SDISLVIVAAGRSTRF----SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDI-AYMKKALP-----EIKF   73 (378)
T ss_pred             CcceEEEECCCCCccC----CCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHH-HHHHHhcc-----cCCe
Confidence            5678999999999999    6678999999999999999999999987 7999999885421 11221111     111 


Q ss_pred             eEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 018019           79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (362)
Q Consensus        79 i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (362)
                      +.+  .....+..++++.+++.+..+.++|..||  ++....+..+++...+.+  .++...+
T Consensus        74 v~~--v~gG~~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~~~--a~i~~~p  132 (378)
T PRK09382         74 VTL--VTGGATRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDKAD--CVLPALP  132 (378)
T ss_pred             EEE--eCCCchHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhcCC--eEEEEEE
Confidence            222  23445678999999988866678888999  677777888888776543  3444433

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=99.32  E-value=1.5e-11  Score=108.81  Aligned_cols=120  Identities=26%  Similarity=0.382  Sum_probs=84.8

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      +.+||+|||.|+||    ..+.||++++++|+|+|.|+|+.+.+. .+++|+|++...+ .+.+++.+..     ..+.+
T Consensus         1 V~aIilAaG~G~R~----g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~-~~~~~~~~~~-----~~v~i   70 (221)
T PF01128_consen    1 VAAIILAAGSGSRM----GSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPED-IDYVEELLSK-----KKVKI   70 (221)
T ss_dssp             EEEEEEESS-STCC----TSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGG-HHHHHHHHHH-----TTEEE
T ss_pred             CEEEEeCCccchhc----CcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchh-HHHHHHhhcC-----CCEEE
Confidence            35899999999999    778999999999999999999999885 5899999998554 2455555543     23444


Q ss_pred             EEcCCCCCHHHHHHHHHHhcCCC--cEEEEeCC--cccCCChHHHHHHHHh-cCCeEE
Q 018019           82 ATVPEDVGTAGALRAIAHHLTAK--DVLVVSGD--LVSDVPPGAVTAAHRR-HDAVVT  134 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~--~~lv~~~D--~i~~~~l~~~l~~h~~-~~a~~t  134 (362)
                      +  .......++++.++..+...  .++|-.|=  ++....+.++++..++ .++.+.
T Consensus        71 v--~GG~tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~  126 (221)
T PF01128_consen   71 V--EGGATRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAIP  126 (221)
T ss_dssp             E--E--SSHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEE
T ss_pred             e--cCChhHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEE
Confidence            4  45567789999998887643  33443333  6666678888988876 555443

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=99.32  E-value=7.2e-11  Score=105.17  Aligned_cols=119  Identities=15%  Similarity=0.214  Sum_probs=89.5

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~   83 (362)
                      |||+|+|.|+||    .   .|.++|++|+|||.|+++.+.+++ +++|+|.+..    +.+.+....+     +..+..
T Consensus         2 aiIpArG~Skr~----~---~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~----~~i~~~a~~~-----g~~v~~   65 (222)
T TIGR03584         2 AIIPARGGSKRI----P---RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD----EEIAEVAKSY-----GASVPF   65 (222)
T ss_pred             EEEccCCCCCCC----C---CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC----HHHHHHHHHc-----CCEeEE
Confidence            799999999999    3   399999999999999999999987 6778776653    3455555432     333321


Q ss_pred             --c----CCCCCHHHHHHHHHHhcC----CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 018019           84 --V----PEDVGTAGALRAIAHHLT----AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (362)
Q Consensus        84 --~----~~~~gt~~al~~~~~~i~----~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (362)
                        .    .+..|+.++++.+++.+.    .+.++++.||  ++...++..+++.+.+.+++..+.+.+
T Consensus        66 ~r~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~  133 (222)
T TIGR03584        66 LRPKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTS  133 (222)
T ss_pred             eChHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeec
Confidence              1    335788899999987663    3558999999  677889999999998766776555544

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=99.31  E-value=3.3e-11  Score=102.74  Aligned_cols=117  Identities=27%  Similarity=0.363  Sum_probs=94.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      .+-+||||+|+|+||      +.+|.|+|+.|+||++++++....+++++++|++++.. .+......     ...++.+
T Consensus         5 ~v~~VvLAAGrssRm------G~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~-~~~~~a~~-----~~~~~~~   72 (199)
T COG2068           5 TVAAVVLAAGRSSRM------GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRV-AEAVEALL-----AQLGVTV   72 (199)
T ss_pred             ceEEEEEcccccccC------CCcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcch-hhHHHhhh-----ccCCeEE
Confidence            357899999999999      47899999999999999999999999999999999752 11222211     2356777


Q ss_pred             EEcCC-CCCHHHHHHHHHHhcCCC--cEEEEeCC--cccCCChHHHHHHHHhcC
Q 018019           82 ATVPE-DVGTAGALRAIAHHLTAK--DVLVVSGD--LVSDVPPGAVTAAHRRHD  130 (362)
Q Consensus        82 ~~~~~-~~gt~~al~~~~~~i~~~--~~lv~~~D--~i~~~~l~~~l~~h~~~~  130 (362)
                      +..++ ..|.+.+++.+......+  .++++.||  .++..++..+++.+..++
T Consensus        73 v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~  126 (199)
T COG2068          73 VVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRARG  126 (199)
T ss_pred             EeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhccccC
Confidence            76655 589999999998888644  68999999  488889999999988773

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=99.30  E-value=3.6e-11  Score=105.93  Aligned_cols=126  Identities=25%  Similarity=0.291  Sum_probs=88.1

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |.+.+||+|||.|+||    +.+.||.+++++|+|||+|+|+.+.... +++|+|+++... ...+.++..  ......+
T Consensus         3 ~~~~~vilAaG~G~R~----~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~-~~~~~~~~~--~~~~~~v   75 (230)
T COG1211           3 MMVSAVILAAGFGSRM----GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPED-DPYFEKLPK--LSADKRV   75 (230)
T ss_pred             ceEEEEEEcCcccccc----CCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhh-hHHHHHhhh--hccCCeE
Confidence            4578999999999999    7799999999999999999999998875 799999998532 234444432  1111223


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhcCC--Cc-EEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 018019           80 EVATVPEDVGTAGALRAIAHHLTA--KD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~--~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~  135 (362)
                      .+  ..+.....++++.+++.+..  ++ +||-.+-  +++...+.++++.....++.+++
T Consensus        76 ~~--v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~a  134 (230)
T COG1211          76 EV--VKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILA  134 (230)
T ss_pred             EE--ecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEE
Confidence            33  35567788999999988862  33 3333333  56666788888555445554443

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=99.25  E-value=7.7e-11  Score=112.76  Aligned_cols=119  Identities=19%  Similarity=0.270  Sum_probs=87.8

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      +.+||||||.|+||    . +.||+|+|++|+|||+|+++.+.. .+++|+|++....  +.+.+++.       ++.++
T Consensus         6 i~~VILAgG~s~Rm----g-g~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~--~~~~~~~~-------~~~~i   70 (366)
T PRK14489          6 IAGVILAGGLSRRM----N-GRDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDP--ARYQDLFP-------GLPVY   70 (366)
T ss_pred             ceEEEEcCCcccCC----C-CCCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCH--HHHHhhcc-------CCcEE
Confidence            57999999999999    3 478999999999999999999975 4899998776432  23322211       12233


Q ss_pred             Ec--CCCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEE
Q 018019           83 TV--PEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAM  136 (362)
Q Consensus        83 ~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l  136 (362)
                      ..  ....|..++++.+++.+..+.++|+.||  ++....+..+++.+...++++.+.
T Consensus        71 ~d~~~g~~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~  128 (366)
T PRK14489         71 PDILPGFQGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP  128 (366)
T ss_pred             ecCCCCCCChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence            22  2236888999999888866779999999  466667888888776666665543

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=99.23  E-value=6.5e-11  Score=102.54  Aligned_cols=111  Identities=22%  Similarity=0.334  Sum_probs=81.5

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |.|.+||||||+|+|| .      +|+|++++|+|||+|+++.|....- .++|+.... .  .  .+.      ..+++
T Consensus         3 ~~~~~vILAGG~srRm-~------dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~-~--~--~~~------~~g~~   63 (192)
T COG0746           3 TPMTGVILAGGKSRRM-R------DKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRN-Q--G--RYA------EFGLP   63 (192)
T ss_pred             CCceEEEecCCccccc-c------ccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCc-h--h--hhh------ccCCc
Confidence            4688999999999999 2      4999999999999999999987644 455554422 1  1  111      23466


Q ss_pred             EEEcCCCC-CHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 018019           81 VATVPEDV-GTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHD  130 (362)
Q Consensus        81 i~~~~~~~-gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~  130 (362)
                      ++....+. |...+++.+++....+.+++++||+  +...-+..+.....+.+
T Consensus        64 vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~  116 (192)
T COG0746          64 VVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG  116 (192)
T ss_pred             eeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence            66544443 9999999999998878899999995  55555676766665544

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=99.17  E-value=3.2e-10  Score=101.93  Aligned_cols=118  Identities=23%  Similarity=0.297  Sum_probs=83.4

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~   83 (362)
                      |||||||.|+||    .   +|+|++++|+|||+|+++.+..++ +++++|+++.....+.+.+++..     .++.++.
T Consensus         2 aiIlA~G~S~R~----~---~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-----~~v~~v~   69 (233)
T cd02518           2 AIIQARMGSTRL----P---GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-----LGVKVFR   69 (233)
T ss_pred             EEEeeCCCCCCC----C---CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-----cCCeEEE
Confidence            799999999999    3   399999999999999999999987 89999998854211344444432     2455554


Q ss_pred             cCCCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 018019           84 VPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus        84 ~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~  135 (362)
                      .+. .+.......+......+.++++.||  ++....+..+++.++..+.++++
T Consensus        70 ~~~-~~~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~  122 (233)
T cd02518          70 GSE-EDVLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTS  122 (233)
T ss_pred             CCc-hhHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            332 2222223333333334679999999  57778899999988876666554

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.17  E-value=3e-10  Score=99.28  Aligned_cols=101  Identities=20%  Similarity=0.257  Sum_probs=73.6

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCC-cchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g-~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++.+||||||.|+||      +.+|+++|++| +|||+|+++++... +++|+|+++..    ..    .      ..+
T Consensus         7 ~~i~~vILAgG~s~Rm------G~~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~----~~----~------~~~   65 (196)
T PRK00560          7 DNIPCVILAGGKSSRM------GENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK----KF----E------FNA   65 (196)
T ss_pred             cCceEEEECCcccccC------CCCceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch----hc----c------cCC
Confidence            4578999999999999      46899999999 99999999999876 88899888731    11    0      122


Q ss_pred             EEEEc--CCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHH
Q 018019           80 EVATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAV  122 (362)
Q Consensus        80 ~i~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~  122 (362)
                      .++..  ....|+..++..++.....+.++|+.||+  +....+..+
T Consensus        66 ~~v~d~~~~~~gpl~gi~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l  112 (196)
T PRK00560         66 PFLLEKESDLFSPLFGIINAFLTLQTPEIFFISVDTPFVSFESIKKL  112 (196)
T ss_pred             cEEecCCCCCCCcHHHHHHHHHhcCCCeEEEEecCcCcCCHHHHHHH
Confidence            33332  22357777777776655567899999995  444445555

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=99.13  E-value=4.3e-10  Score=107.87  Aligned_cols=107  Identities=21%  Similarity=0.302  Sum_probs=79.0

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      .+.+||||||+|+||      +.+|+|+|++|+|||+|+++.+.. .+++|+|+++..    .... +..     .++.+
T Consensus       174 ~i~~iILAGG~SsRm------G~~K~ll~~~Gk~ll~~~l~~l~~-~~~~vvV~~~~~----~~~~-~~~-----~~v~~  236 (369)
T PRK14490        174 PLSGLVLAGGRSSRM------GSDKALLSYHESNQLVHTAALLRP-HCQEVFISCRAE----QAEQ-YRS-----FGIPL  236 (369)
T ss_pred             CceEEEEcCCccccC------CCCcEEEEECCccHHHHHHHHHHh-hCCEEEEEeCCc----hhhH-Hhh-----cCCcE
Confidence            457999999999999      358999999999999999999976 478888877643    1111 111     24555


Q ss_pred             EEcCC-CCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHH
Q 018019           82 ATVPE-DVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAA  125 (362)
Q Consensus        82 ~~~~~-~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~  125 (362)
                      +.... ..|...++..+++....+.++++.||+  +....+..+++.
T Consensus       237 i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~DmP~i~~~~i~~L~~~  283 (369)
T PRK14490        237 ITDSYLDIGPLGGLLSAQRHHPDAAWLVVACDLPFLDEATLQQLVEG  283 (369)
T ss_pred             EeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence            54333 468788888887766667899999994  666667777664

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=99.04  E-value=1.8e-09  Score=101.93  Aligned_cols=107  Identities=21%  Similarity=0.271  Sum_probs=79.1

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      +.+||||||+|+||      +.+|+|+|+.|+||++|+++.+... +++|+|+++..    .... ..     ...+.++
T Consensus       161 i~~IILAGGkSsRM------G~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~----~~~~-~~-----~~~v~~I  223 (346)
T PRK14500        161 LYGLVLTGGKSRRM------GKDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPS----QWQG-TP-----LENLPTL  223 (346)
T ss_pred             ceEEEEeccccccC------CCCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCch----Hhhh-cc-----ccCCeEE
Confidence            56899999999999      4689999999999999999998754 88898887632    1111 00     0123444


Q ss_pred             Ec-CCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHH
Q 018019           83 TV-PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAH  126 (362)
Q Consensus        83 ~~-~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h  126 (362)
                      .. ....|...+|+.+++....++++++.||+  +....+..+++.+
T Consensus       224 ~D~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~  270 (346)
T PRK14500        224 PDRGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHY  270 (346)
T ss_pred             eCCCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhh
Confidence            32 23479999999998877656889999995  5555677777765

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=98.94  E-value=1.1e-09  Score=99.96  Aligned_cols=129  Identities=16%  Similarity=0.181  Sum_probs=78.9

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHh--------CCCCeEEEEccCcchHHHHHHHHHhh
Q 018019            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLEL--------SNIKDLIVVVEGADAALRVGGWISAA   72 (362)
Q Consensus         4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~--------~gi~~v~vv~~~~~~~~~i~~~~~~~   72 (362)
                      .+||||||.||||    +...||+|+||+   |+|+|++.++++..        .+|..+++...+  ..+.+.+++++.
T Consensus         2 a~viLaGG~GtRL----g~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~--t~~~t~~~l~~~   75 (266)
T cd04180           2 AVVLLAGGLGTRL----GKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKY--THEKTQCYFEKI   75 (266)
T ss_pred             EEEEECCCCcccc----CCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCch--hHHHHHHHHHHc
Confidence            5799999999999    789999999999   99999999999976        235444444332  245788888764


Q ss_pred             hcCCcceEEEEcC---------------------CCCCHHHHHHHH-----HHhcC---CCcEEEEeCCc-ccCC-ChHH
Q 018019           73 YVDRLHVEVATVP---------------------EDVGTAGALRAI-----AHHLT---AKDVLVVSGDL-VSDV-PPGA  121 (362)
Q Consensus        73 ~~~~~~i~i~~~~---------------------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~-i~~~-~l~~  121 (362)
                      ......+.+..|+                     .+.|.|+.+...     ++.+.   .+++.|.+.|. +... |.. 
T Consensus        76 ~~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~-  154 (266)
T cd04180          76 NQKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPL-  154 (266)
T ss_pred             CCCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHH-
Confidence            3111122222111                     134555543322     22221   34567777774 3333 444 


Q ss_pred             HHHHHHhcCCeEEEEEee
Q 018019          122 VTAAHRRHDAVVTAMICS  139 (362)
Q Consensus       122 ~l~~h~~~~a~~t~l~~~  139 (362)
                      ++-.+...++++.+-+.+
T Consensus       155 ~lG~~~~~~~~~~~kvv~  172 (266)
T cd04180         155 FIGIAIQNRKAINQKVVP  172 (266)
T ss_pred             HHHHHHHcCCCEEEEEEE
Confidence            556666667776665444

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=98.87  E-value=2.7e-08  Score=85.19  Aligned_cols=125  Identities=12%  Similarity=0.116  Sum_probs=86.2

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |+..|||+|.|.++|. |.      |.+.+++|+|||.|+++.+.+++ |++|+|.+.+    +.+.+....+.   ..+
T Consensus         2 ~~~iAiIpAR~gSKgI-~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs----~~Il~~A~~yg---ak~   67 (228)
T COG1083           2 MKNIAIIPARGGSKGI-KN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDS----EEILEEAKKYG---AKV   67 (228)
T ss_pred             cceEEEEeccCCCCcC-Cc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCCc----HHHHHHHHHhC---ccc
Confidence            5678999999999999 33      99999999999999999999998 7888888763    35555444331   122


Q ss_pred             EEEEcC----CCCCHHHHHHHHHHhcC-CCc-EEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 018019           80 EVATVP----EDVGTAGALRAIAHHLT-AKD-VLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (362)
Q Consensus        80 ~i~~~~----~~~gt~~al~~~~~~i~-~~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (362)
                      .+....    +...|.+++.++.+.+. .++ ++.+.+-  +.+..+++..++.+.+.+.+-.+.+++
T Consensus        68 ~~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e  135 (228)
T COG1083          68 FLKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVE  135 (228)
T ss_pred             cccCChhhccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEee
Confidence            223221    22344456666666544 233 5666554  788899999999998876654444433

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=98.82  E-value=3.8e-08  Score=87.31  Aligned_cols=113  Identities=20%  Similarity=0.322  Sum_probs=78.7

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      .|||+|.|.++|+    ..   |.|.+++|+|||+|+++++.+++ +++|+|.|..    +.+.+.+.++     ++.+.
T Consensus         1 iaiIpAR~gS~rl----p~---Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~----~~i~~~~~~~-----g~~v~   64 (217)
T PF02348_consen    1 IAIIPARGGSKRL----PG---KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD----EEIDDIAEEY-----GAKVI   64 (217)
T ss_dssp             EEEEEE-SSSSSS----TT---GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS----HHHHHHHHHT-----TSEEE
T ss_pred             CEEEecCCCCCCC----Cc---chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC----HHHHHHHHHc-----CCeeE
Confidence            3899999999999    33   99999999999999999999986 7999999884    3566666553     23344


Q ss_pred             EcCCC-CCHHHHHHHHHHhcCCC---cEEEEeCC--cccCCChHHHHHHHHhcCCe
Q 018019           83 TVPED-VGTAGALRAIAHHLTAK---DVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (362)
Q Consensus        83 ~~~~~-~gt~~al~~~~~~i~~~---~~lv~~~D--~i~~~~l~~~l~~h~~~~a~  132 (362)
                      .-+.. ...-+....+......+   .++.+.||  ++.+..+..+++.+.+...+
T Consensus        65 ~~~~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~  120 (217)
T PF02348_consen   65 FRRGSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED  120 (217)
T ss_dssp             E--TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred             EcChhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence            33332 22234444444433333   67888889  56677899999999888765

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=98.72  E-value=2.2e-06  Score=80.43  Aligned_cols=131  Identities=20%  Similarity=0.266  Sum_probs=86.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHhCC------------CCeEEEEccCcchHHHHH
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELSN------------IKDLIVVVEGADAALRVG   66 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~~g------------i~~v~vv~~~~~~~~~i~   66 (362)
                      ++.+||||||.||||    +...||+|+||+   |+|++++.++.+...+            + .++|.++... .+.+.
T Consensus        15 ~va~viLaGG~GTRL----g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t-~~~t~   88 (323)
T cd04193          15 KVAVLLLAGGQGTRL----GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEAT-HEETR   88 (323)
T ss_pred             CEEEEEECCCccccc----CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhH-hHHHH
Confidence            467899999999999    889999999998   6999999999998742            3 3556666332 35788


Q ss_pred             HHHHh--hhc-CCcceEEEEcC---------------------CCCCHHHHHHHH-----HHhcC---CCcEEEEeCCcc
Q 018019           67 GWISA--AYV-DRLHVEVATVP---------------------EDVGTAGALRAI-----AHHLT---AKDVLVVSGDLV  114 (362)
Q Consensus        67 ~~~~~--~~~-~~~~i~i~~~~---------------------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i  114 (362)
                      +++++  ++. .+..+.+..|+                     .+.|.|+-....     ++.+.   .+++.+.+.|.+
T Consensus        89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~  168 (323)
T cd04193          89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI  168 (323)
T ss_pred             HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence            88875  221 11123222220                     135666543322     23232   367888888963


Q ss_pred             -c-CCChHHHHHHHHhcCCeEEEEEee
Q 018019          115 -S-DVPPGAVTAAHRRHDAVVTAMICS  139 (362)
Q Consensus       115 -~-~~~l~~~l~~h~~~~a~~t~l~~~  139 (362)
                       . ..|. .++-.+..+++++.+-+.+
T Consensus       169 L~~~~Dp-~~lG~~~~~~~~~~~kvv~  194 (323)
T cd04193         169 LVKVADP-VFIGFCISKGADVGAKVVR  194 (323)
T ss_pred             cccccCH-HHhHHHHHcCCceEEEEEE
Confidence             3 3444 3677888889998876554

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

Probab=98.66  E-value=2.1e-07  Score=80.09  Aligned_cols=121  Identities=20%  Similarity=0.260  Sum_probs=85.2

Q ss_pred             CCceEEEE-eCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcc
Q 018019            1 MDFQVVVL-AGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (362)
Q Consensus         1 M~~~avIl-A~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~   78 (362)
                      |.+.++|+ |.-.+|||    ..   |.|+|++|+|||+++|+++..+. +++++|.++.....+.+.+++.+     .|
T Consensus         1 ~~~I~~IiQARmgStRL----pg---KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~-----~G   68 (241)
T COG1861           1 MSMILVIIQARMGSTRL----PG---KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS-----HG   68 (241)
T ss_pred             CCcEEEEeeecccCccC----Cc---chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH-----cC
Confidence            55555555 55456788    33   99999999999999999998886 78899999866555677777764     24


Q ss_pred             eEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEE
Q 018019           79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVT  134 (362)
Q Consensus        79 i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t  134 (362)
                      +.+.. .....-.+....+.+....+.++=+.||  ++.+.-+..+++.|.++|++-+
T Consensus        69 ~~vfr-Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~  125 (241)
T COG1861          69 FYVFR-GSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV  125 (241)
T ss_pred             eeEec-CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence            54431 1112222334455666656678889999  5666667889999999988743

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional

Probab=98.52  E-value=1.4e-05  Score=78.43  Aligned_cols=131  Identities=18%  Similarity=0.280  Sum_probs=81.3

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHhC------------C-CCeEEEEccCcchHHHH
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS------------N-IKDLIVVVEGADAALRV   65 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~~------------g-i~~v~vv~~~~~~~~~i   65 (362)
                      ++.+||||||.||||    +...||+|+||+   |+|++++.++++...            + .-.++|+++... .+.+
T Consensus       106 kvavViLAGG~GTRL----g~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t-~~~t  180 (482)
T PTZ00339        106 EVAVLILAGGLGTRL----GSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFN-HDQT  180 (482)
T ss_pred             CeEEEEECCCCcCcC----CCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcch-HHHH
Confidence            467999999999999    778999999994   899999999999764            1 124566665433 3578


Q ss_pred             HHHHHhh--hc-CCcceEEEEc--------C--------------CCCCHHHHHHHH-----HHhcC---CCcEEEEeCC
Q 018019           66 GGWISAA--YV-DRLHVEVATV--------P--------------EDVGTAGALRAI-----AHHLT---AKDVLVVSGD  112 (362)
Q Consensus        66 ~~~~~~~--~~-~~~~i~i~~~--------~--------------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D  112 (362)
                      .+++.+.  +. +...+.+..|        .              .+.|.|+-....     ++.+.   -+++.|.+.|
T Consensus       181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD  260 (482)
T PTZ00339        181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID  260 (482)
T ss_pred             HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence            8888742  21 1111221111        0              134665543322     22222   3578888888


Q ss_pred             cc-c-CCChHHHHHHHHhcCC-eEEEEEe
Q 018019          113 LV-S-DVPPGAVTAAHRRHDA-VVTAMIC  138 (362)
Q Consensus       113 ~i-~-~~~l~~~l~~h~~~~a-~~t~l~~  138 (362)
                      .+ . ..|. .++-.+...++ ++...+.
T Consensus       261 N~L~k~~DP-~flG~~~~~~~~~~~~kvv  288 (482)
T PTZ00339        261 NILAKVLDP-EFIGLASSFPAHDVLNKCV  288 (482)
T ss_pred             cccccccCH-HHhHHHHHCCchhheeeee
Confidence            54 3 3343 36677777777 6554433

>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose

Probab=98.10  E-value=0.00084  Score=62.14  Aligned_cols=190  Identities=14%  Similarity=0.132  Sum_probs=108.7

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC-CcchHHHHHHHHHh----CCCC-eEEEEccCcchHHHHHHHHHhhhcCC
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR   76 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~-g~plI~~~l~~l~~----~gi~-~v~vv~~~~~~~~~i~~~~~~~~~~~   76 (362)
                      +.+|+||||.||||    +.+.||.++||. |+.+++..++++..    .|.. -.+|.++... .+...++++++....
T Consensus         4 vavl~LaGG~GTRL----G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~~~~~~~   78 (300)
T cd00897           4 LVVLKLNGGLGTSM----GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNT-DEDTKKILKKYAGVN   78 (300)
T ss_pred             EEEEEecCCccccc----CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcc-hHHHHHHHHHcCCCc
Confidence            46789999999999    889999999995 56999999998854    3432 3555555443 356778887642111


Q ss_pred             cceEEEEc-------------------C-----CCCCHHH---HHHHH--HHhcC---CCcEEEEeCCcccC-CChHHHH
Q 018019           77 LHVEVATV-------------------P-----EDVGTAG---ALRAI--AHHLT---AKDVLVVSGDLVSD-VPPGAVT  123 (362)
Q Consensus        77 ~~i~i~~~-------------------~-----~~~gt~~---al~~~--~~~i~---~~~~lv~~~D~i~~-~~l~~~l  123 (362)
                      ..+.+..|                   .     .+.|.|+   +|+..  ++.+.   .+++.+.+.|.+.. .|.. ++
T Consensus        79 ~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~-~l  157 (300)
T cd00897          79 VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLR-IL  157 (300)
T ss_pred             cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHH-HH
Confidence            12221111                   0     1234443   33321  22222   36789999996543 4544 77


Q ss_pred             HHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcE-EEEeecCcccccccccchHHHhhcCcee
Q 018019          124 AAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF-LLHIATGAELEKDTRIRKSILRAVGQMD  202 (362)
Q Consensus       124 ~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-l~~~~~~~~~ek~~~i~~~~l~~~~~~~  202 (362)
                      ..|..+++++++=+.+..  .+              .+.-|++... +|+. ++.+.         .++.+....... .
T Consensus       158 g~~~~~~~~~~~evv~Kt--~~--------------dek~G~l~~~-~g~~~vvEys---------e~p~e~~~~~~~-~  210 (300)
T cd00897         158 NHMVDNKAEYIMEVTDKT--RA--------------DVKGGTLIQY-EGKLRLLEIA---------QVPKEHVDEFKS-I  210 (300)
T ss_pred             HHHHhcCCceEEEEeecC--CC--------------CCcccEEEEE-CCEEEEEEec---------cCCHHHHHhhcC-c
Confidence            888889999887444322  11              1223444432 3432 22222         223222211110 1


Q ss_pred             eecCceeceEEeeCHHHHHHHHh
Q 018019          203 IRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       203 ~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                      ....+.+++.+.|+-+.|..+++
T Consensus       211 ~~~~~~nt~n~~~~l~~L~~~~~  233 (300)
T cd00897         211 KKFKIFNTNNLWVNLKAVKRVVE  233 (300)
T ss_pred             ccceEEEEeEEEEEHHHHHHHHH
Confidence            12356788888999988887764

UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=97.94  E-value=7.6e-05  Score=64.07  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=62.8

Q ss_pred             CCCeeeeeeCC--cchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc-CCCCCHHHHHHHHHH
Q 018019           23 EVPKALLPVAN--RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATV-PEDVGTAGALRAIAH   99 (362)
Q Consensus        23 ~~pK~llpv~g--~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~-~~~~gt~~al~~~~~   99 (362)
                      +.+|+|++++|  +|||+|+++.+. ..+++|+|+++...   ..    .     ..++.++.. ....|...++..++.
T Consensus         2 G~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~~---~~----~-----~~~~~~i~d~~~g~gpl~~~~~gl~   68 (178)
T PRK00576          2 GRDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPGQ---PL----P-----ELPAPVLRDELRGLGPLPATGRGLR   68 (178)
T ss_pred             CCCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCCc---cc----c-----cCCCCEeccCCCCCCcHHHHHHHHH
Confidence            46899999999  999999999876 46899999987431   11    1     123334432 223566665554443


Q ss_pred             hc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 018019          100 HL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHD  130 (362)
Q Consensus       100 ~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~  130 (362)
                      ..   ..++++|+.||+  +....+..+++.+...+
T Consensus        69 ~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~  104 (178)
T PRK00576         69 AAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTD  104 (178)
T ss_pred             HHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCC
Confidence            32   357899999995  65566777777654433

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=97.93  E-value=0.0019  Score=63.12  Aligned_cols=190  Identities=12%  Similarity=0.111  Sum_probs=108.7

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC-CcchHHHHHHHHHh----CCCCe-EEEEccCcchHHHHHHHHHhhhcCC
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNIKD-LIVVVEGADAALRVGGWISAAYVDR   76 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~-g~plI~~~l~~l~~----~gi~~-v~vv~~~~~~~~~i~~~~~~~~~~~   76 (362)
                      +.+|.||||.||||    +...||.++|+. |+.+++..++++..    .|..= .+|.++... .+...++++++-..+
T Consensus        80 ~avlkLnGGlGTrm----G~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T-~~~T~~~l~k~~~~~  154 (469)
T PLN02474         80 LVVLKLNGGLGTTM----GCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNT-HDDTQKIVEKYTNSN  154 (469)
T ss_pred             EEEEEecCCccccc----CCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCch-hHHHHHHHHHcCCCc
Confidence            45789999999999    889999999995 57999988888754    34432 355555433 356777777532111


Q ss_pred             cceEEEEc----------------C--------CCCCHHH---HHHHH--HHhcC---CCcEEEEeCCcccC-CChHHHH
Q 018019           77 LHVEVATV----------------P--------EDVGTAG---ALRAI--AHHLT---AKDVLVVSGDLVSD-VPPGAVT  123 (362)
Q Consensus        77 ~~i~i~~~----------------~--------~~~gt~~---al~~~--~~~i~---~~~~lv~~~D~i~~-~~l~~~l  123 (362)
                      ..+.+..|                .        .+.|-|+   +|+..  ++.+.   .+++.|.+.|.+.. .|.. ++
T Consensus       155 ~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~-~l  233 (469)
T PLN02474        155 IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK-IL  233 (469)
T ss_pred             cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH-HH
Confidence            22222211                0        1234443   33322  23222   36889999997543 4554 77


Q ss_pred             HHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcE-EEEeecCcccccccccchHHHhhcCcee
Q 018019          124 AAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF-LLHIATGAELEKDTRIRKSILRAVGQMD  202 (362)
Q Consensus       124 ~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-l~~~~~~~~~ek~~~i~~~~l~~~~~~~  202 (362)
                      ..|..+++++++=+.+...  +              ...-|.+.. .+|+. ++.+.+         ++.+....... .
T Consensus       234 g~~~~~~~e~~~ev~~Kt~--~--------------d~kgG~l~~-~dgk~~lvEysq---------vp~e~~~~f~~-~  286 (469)
T PLN02474        234 NHLIQNKNEYCMEVTPKTL--A--------------DVKGGTLIS-YEGKVQLLEIAQ---------VPDEHVNEFKS-I  286 (469)
T ss_pred             HHHHhcCCceEEEEeecCC--C--------------CCCccEEEE-ECCEEEEEEEec---------CCHHHHHhhcc-c
Confidence            8888889888775543221  1              111244432 23432 233322         23322221111 1


Q ss_pred             eecCceeceEEeeCHHHHHHHHh
Q 018019          203 IRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       203 ~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                      ....+.+++.+.|+-+.|..+++
T Consensus       287 ~kf~~fNtnn~w~~L~~l~~~~~  309 (469)
T PLN02474        287 EKFKIFNTNNLWVNLKAIKRLVE  309 (469)
T ss_pred             ccceeeeeeeEEEEHHHHHHHhh
Confidence            23467788999999999988764

>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2

Probab=97.52  E-value=0.006  Score=59.32  Aligned_cols=192  Identities=17%  Similarity=0.228  Sum_probs=106.1

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCC-cchHHHHHHHHHh----CCCC-eEEEEccCcchHHHHHHHHHhhhcCC
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLEL----SNIK-DLIVVVEGADAALRVGGWISAAYVDR   76 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g-~plI~~~l~~l~~----~gi~-~v~vv~~~~~~~~~i~~~~~~~~~~~   76 (362)
                      +.+|+||||.||||    +...||.++||.. +.+++..++++..    .|.. -.+|.++... .+...+++++++.-.
T Consensus        57 vavl~LaGGlGTrl----G~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T-~~~T~~~l~kyfg~~  131 (420)
T PF01704_consen   57 VAVLKLAGGLGTRL----GCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNT-HEDTRKFLEKYFGLD  131 (420)
T ss_dssp             EEEEEEEESBSGCC----TESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTT-HHHHHHHHHHGCGSS
T ss_pred             EEEEEEcCcccCcc----CCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCccc-HHHHHHHHHHhcCCC
Confidence            45688999999999    8899999999954 5899988888765    2432 3566666443 357888888744322


Q ss_pred             cceEEEEc----------------C-------C---CCCHHHHHHHH-----HHhcC---CCcEEEEeCCcccC-CChHH
Q 018019           77 LHVEVATV----------------P-------E---DVGTAGALRAI-----AHHLT---AKDVLVVSGDLVSD-VPPGA  121 (362)
Q Consensus        77 ~~i~i~~~----------------~-------~---~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~~-~~l~~  121 (362)
                      ..+.+..|                +       .   +.|.|+.....     ++.+.   .+++.|.+.|.+.. .|. .
T Consensus       132 ~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp-~  210 (420)
T PF01704_consen  132 VDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP-V  210 (420)
T ss_dssp             CCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H-H
T ss_pred             cceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH-H
Confidence            22222211                0       0   22555432221     22221   36899999997543 444 3


Q ss_pred             HHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCce
Q 018019          122 VTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQM  201 (362)
Q Consensus       122 ~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~  201 (362)
                      ++..+.++++++.+-+.+...  +              .+.-|++... +|+.  .+.|-      ..++..........
T Consensus       211 ~lG~~~~~~~~~~~evv~Kt~--~--------------dek~Gvl~~~-~G~~--~vvEy------sqip~~~~~~~~~~  265 (420)
T PF01704_consen  211 FLGYMIEKNADFGMEVVPKTS--P--------------DEKGGVLCRY-DGKL--QVVEY------SQIPKEHMAEFKDI  265 (420)
T ss_dssp             HHHHHHHTT-SEEEEEEE-CS--T--------------TTSSEEEEEE-TTEE--EEEEG------GGS-HHGHHHHTST
T ss_pred             HHHHHHhccchhheeeeecCC--C--------------CCceeEEEEe-CCcc--EEEEe------ccCCHHHHHhhhcc
Confidence            788888889998876655321  1              1223555433 3432  22221      12333322211110


Q ss_pred             eeecCceeceEEeeCHHHHHHHHhc
Q 018019          202 DIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       202 ~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                      . ...+.+++--.|+-..|..+++.
T Consensus       266 ~-~~~~FntnNi~~~l~~l~~~~~~  289 (420)
T PF01704_consen  266 K-GFLLFNTNNIWFSLDFLKRLLER  289 (420)
T ss_dssp             T-TSBEEEEEEEEEEHHHHHHHHHT
T ss_pred             c-cceEEEeceeeEEHHHHHHHHHh
Confidence            0 12344677668999999887654

7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....

>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.011  Score=57.12  Aligned_cols=130  Identities=18%  Similarity=0.221  Sum_probs=78.6

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC-CcchHHHHHHHHHhC----CCC-eEEEEccCcchHHHHHHHHHh--hhc
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELS----NIK-DLIVVVEGADAALRVGGWISA--AYV   74 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~-g~plI~~~l~~l~~~----gi~-~v~vv~~~~~~~~~i~~~~~~--~~~   74 (362)
                      +.+|+||||.||||    ....||.+++|. |+++++.+.+.+..+    +++ ..++.++-..  ++-..++..  ++.
T Consensus       106 lAvl~LaGGqGtrl----G~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt--~~t~s~f~~~~Y~~  179 (472)
T COG4284         106 LAVLKLAGGQGTRL----GCDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNT--EETDSYFKSNDYFG  179 (472)
T ss_pred             eEEEEecCCccccc----ccCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCc--HHHHHHHhhhhhcC
Confidence            45789999999999    888999999999 889999988887553    443 2455555322  233333332  211


Q ss_pred             -CCcceEEEEc------------------CC-----CCCHH---HHHHH--HHHhc-C--CCcEEEEeCCc-ccCCChHH
Q 018019           75 -DRLHVEVATV------------------PE-----DVGTA---GALRA--IAHHL-T--AKDVLVVSGDL-VSDVPPGA  121 (362)
Q Consensus        75 -~~~~i~i~~~------------------~~-----~~gt~---~al~~--~~~~i-~--~~~~lv~~~D~-i~~~~l~~  121 (362)
                       ++..|.+..|                  +.     +.|.|   .+|..  ..+.+ .  .+++.|.+.|. ....|+. 
T Consensus       180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~-  258 (472)
T COG4284         180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLK-  258 (472)
T ss_pred             CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHH-
Confidence             1112222111                  11     23444   44443  22222 2  36788888995 4456765 


Q ss_pred             HHHHHHhcCCeEEEEEee
Q 018019          122 VTAAHRRHDAVVTAMICS  139 (362)
Q Consensus       122 ~l~~h~~~~a~~t~l~~~  139 (362)
                      ++..+..++.++++=++.
T Consensus       259 ~lg~~~~~~~e~~~e~t~  276 (472)
T COG4284         259 FLGFMAETNYEYLMETTD  276 (472)
T ss_pred             HHHHHHhcCcceeEEEee
Confidence            678888888888775544

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase

Probab=97.33  E-value=0.035  Score=54.86  Aligned_cols=131  Identities=14%  Similarity=0.192  Sum_probs=80.8

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHhC--------------CCC-eEEEEccCcchHHH
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------------NIK-DLIVVVEGADAALR   64 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~~--------------gi~-~v~vv~~~~~~~~~   64 (362)
                      +-+|+||||.||||    +...||.+++|+   |+.+++...+++...              ++. ..+|.++... .+.
T Consensus       117 vavvlLAGGqGTRL----G~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T-~~~  191 (493)
T PLN02435        117 LAVVLLSGGQGTRL----GSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFT-DEA  191 (493)
T ss_pred             EEEEEeCCCccccc----CCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcch-hHH
Confidence            45788899999999    889999999885   789999988876331              121 2466666443 357


Q ss_pred             HHHHHHhh--hc-CCcceEEEEc---------------------CCCCCHHHHHHHH-----HHhcC---CCcEEEEeCC
Q 018019           65 VGGWISAA--YV-DRLHVEVATV---------------------PEDVGTAGALRAI-----AHHLT---AKDVLVVSGD  112 (362)
Q Consensus        65 i~~~~~~~--~~-~~~~i~i~~~---------------------~~~~gt~~al~~~-----~~~i~---~~~~lv~~~D  112 (362)
                      ..+++++.  ++ ....+.+..|                     -.+.|.|+.....     ++.+.   -+++.+.+.|
T Consensus       192 T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD  271 (493)
T PLN02435        192 TRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVD  271 (493)
T ss_pred             HHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecc
Confidence            77888752  21 1122333222                     1135665533322     23332   3577888888


Q ss_pred             cc-c-CCChHHHHHHHHhcCCeEEEEEee
Q 018019          113 LV-S-DVPPGAVTAAHRRHDAVVTAMICS  139 (362)
Q Consensus       113 ~i-~-~~~l~~~l~~h~~~~a~~t~l~~~  139 (362)
                      .+ . ..|. .++-.+..+++++.+-+.+
T Consensus       272 N~L~~~~DP-~flG~~~~~~~d~~~kVv~  299 (493)
T PLN02435        272 NALVRVADP-TFLGYFIDKGVASAAKVVR  299 (493)
T ss_pred             cccccccCH-HHHHHHHhcCCceEEEeee
Confidence            63 3 3443 4778888889988775443

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=97.21  E-value=0.0019  Score=56.15  Aligned_cols=84  Identities=21%  Similarity=0.174  Sum_probs=61.6

Q ss_pred             cchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC--CcEEEEeC
Q 018019           34 RPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA--KDVLVVSG  111 (362)
Q Consensus        34 ~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~  111 (362)
                      +|||.|+++.+..+++.+++|+++..    .+..+...     .++.++..+. .|.+.+++.+.+++..  +.++++.|
T Consensus        30 ~~ll~~~l~~l~~~~~~~vvvv~~~~----~~~~~~~~-----~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~   99 (195)
T TIGR03552        30 LAMLRDVITALRGAGAGAVLVVSPDP----ALLEAARN-----LGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMA   99 (195)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCH----HHHHHHHh-----cCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeC
Confidence            79999999999998888888887732    33333322     3566665443 4899999999877643  36999999


Q ss_pred             C--cccCCChHHHHHHHH
Q 018019          112 D--LVSDVPPGAVTAAHR  127 (362)
Q Consensus       112 D--~i~~~~l~~~l~~h~  127 (362)
                      |  ++....+..+++.+.
T Consensus       100 D~P~l~~~~i~~l~~~~~  117 (195)
T TIGR03552       100 DLPLLTPRELKRLLAAAT  117 (195)
T ss_pred             CCCCCCHHHHHHHHHhcc
Confidence            9  477778888888664

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=96.86  E-value=0.036  Score=44.48  Aligned_cols=97  Identities=21%  Similarity=0.132  Sum_probs=65.5

Q ss_pred             eeeeCCc-chHHHHHHHHHhCC--CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019           28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~  104 (362)
                      ++|..|+ +++.++++++.+.+  ..+++|+.+...  +...+.+.+.......+.........|.+.++..+.+....+
T Consensus         2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d   79 (156)
T cd00761           2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGST--DGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARGE   79 (156)
T ss_pred             EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCC--ccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhcCC
Confidence            4677776 99999999999987  778888877543  234444443321112234444556789999999888877667


Q ss_pred             cEEEEeCCcccCCC-hHHHHHHH
Q 018019          105 DVLVVSGDLVSDVP-PGAVTAAH  126 (362)
Q Consensus       105 ~~lv~~~D~i~~~~-l~~~l~~h  126 (362)
                      .++++.+|.+...+ +..++..+
T Consensus        80 ~v~~~d~D~~~~~~~~~~~~~~~  102 (156)
T cd00761          80 YILFLDADDLLLPDWLERLVAEL  102 (156)
T ss_pred             EEEEECCCCccCccHHHHHHHHH
Confidence            89999999877665 44443443

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose

Probab=96.74  E-value=0.0097  Score=55.42  Aligned_cols=131  Identities=14%  Similarity=0.163  Sum_probs=78.8

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCeeeeee---CCcchHHHHHHHHHhC--------CC-CeEEEEccCcchHHHHHHHHHh
Q 018019            4 QVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLELS--------NI-KDLIVVVEGADAALRVGGWISA   71 (362)
Q Consensus         4 ~avIlA~G~gtrl~pl~t~~~pK~llpv---~g~plI~~~l~~l~~~--------gi-~~v~vv~~~~~~~~~i~~~~~~   71 (362)
                      .+|+||||.||||    +...||.++||   .|+.++++.++++...        +. -..+|.++... .+...+++++
T Consensus         2 a~vllaGG~GTRL----G~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~T-h~~T~~~fe~   76 (315)
T cd06424           2 VFVLVAGGLGERL----GYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDT-HSKTLKLLEE   76 (315)
T ss_pred             EEEEecCCCcccc----CCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCch-hHHHHHHHHH
Confidence            4689999999999    88999999999   4889999999888552        22 23566666443 3577788874


Q ss_pred             --hhc-CCcceEE--------EE---------c--C-----CCCCHHHHHHHH-----HHhcC---CCcEEEEeCCc-cc
Q 018019           72 --AYV-DRLHVEV--------AT---------V--P-----EDVGTAGALRAI-----AHHLT---AKDVLVVSGDL-VS  115 (362)
Q Consensus        72 --~~~-~~~~i~i--------~~---------~--~-----~~~gt~~al~~~-----~~~i~---~~~~lv~~~D~-i~  115 (362)
                        ++. ++..+.+        +.         .  +     .+.|.|+-....     ++.+.   .+++.+..-|. +.
T Consensus        77 n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~  156 (315)
T cd06424          77 NNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALA  156 (315)
T ss_pred             CCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhh
Confidence              221 1112221        11         0  0     134555433322     22222   25666666673 33


Q ss_pred             CCChHHHHHHHHhcCCeEEEEEee
Q 018019          116 DVPPGAVTAAHRRHDAVVTAMICS  139 (362)
Q Consensus       116 ~~~l~~~l~~h~~~~a~~t~l~~~  139 (362)
                      ....-.++-.+..++++++..+.+
T Consensus       157 ~~adP~fiG~~~~~~~d~~~k~v~  180 (315)
T cd06424         157 FKAIPAVLGVSATKSLDMNSLTVP  180 (315)
T ss_pred             hccChhhEEEEecCCCceEeEEEe
Confidence            333344666677778888776554

UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f

>PLN02830 UDP-sugar pyrophosphorylase

Probab=96.70  E-value=0.04  Score=56.05  Aligned_cols=133  Identities=14%  Similarity=0.117  Sum_probs=81.7

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHhC-----------CC-CeEEEEccCcchHHHHHH
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS-----------NI-KDLIVVVEGADAALRVGG   67 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~~-----------gi-~~v~vv~~~~~~~~~i~~   67 (362)
                      +.+|+||||.||||    +...||.++|++   |+++++..++++...           ++ --.+|.++... .+...+
T Consensus       129 vavllLaGGlGTRL----G~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T-~~~T~~  203 (615)
T PLN02830        129 AAFVLVAGGLGERL----GYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDT-HARTLK  203 (615)
T ss_pred             EEEEEecCCccccc----CCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcch-hHHHHH
Confidence            45788999999999    888999999984   789999999987543           11 13566666443 357778


Q ss_pred             HHHh--hhc-CCcceEEEEc----------------C--------CCCCHHHHHHHH-----HHhcC---CCcEEEEeCC
Q 018019           68 WISA--AYV-DRLHVEVATV----------------P--------EDVGTAGALRAI-----AHHLT---AKDVLVVSGD  112 (362)
Q Consensus        68 ~~~~--~~~-~~~~i~i~~~----------------~--------~~~gt~~al~~~-----~~~i~---~~~~lv~~~D  112 (362)
                      ++++  ++. .+..+.+..|                +        .+.|.|+-....     ++.+.   .+++.+.+.|
T Consensus       204 ~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vD  283 (615)
T PLN02830        204 LLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDT  283 (615)
T ss_pred             HHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEecc
Confidence            8875  221 1112222111                1        123444432222     22222   3577888888


Q ss_pred             c-ccCCChHHHHHHHHhcCCeEEEEEeee
Q 018019          113 L-VSDVPPGAVTAAHRRHDAVVTAMICSV  140 (362)
Q Consensus       113 ~-i~~~~l~~~l~~h~~~~a~~t~l~~~~  140 (362)
                      . +.....-.++-.+..+++++.+.+.+.
T Consensus       284 N~L~~~Adp~flG~~~~~~~d~~~kvv~K  312 (615)
T PLN02830        284 NGLVFKAIPAALGVSATKGFDMNSLAVPR  312 (615)
T ss_pred             chhhhcccHHHhHHHHhcCCceEEEEEEC
Confidence            4 222223667888888899988876653

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=96.15  E-value=0.11  Score=42.61  Aligned_cols=108  Identities=18%  Similarity=0.166  Sum_probs=73.4

Q ss_pred             eeeeCCc-chHHHHHHHHHhC--CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019           28 LLPVANR-PVLSYVLEQLELS--NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~--gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~  104 (362)
                      .+|.-|+ ..|..+|+.+.+.  ...+|+|+-+...  +...+.+.++......+.++..+...|.+.++..+.+....+
T Consensus         3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~   80 (169)
T PF00535_consen    3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGST--DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGE   80 (169)
T ss_dssp             EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S--SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SS
T ss_pred             EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccc--ccccccccccccccccccccccccccccccccccccccccee
Confidence            4677777 7889999988776  3456777765431  233444444322235688888777789899999998888778


Q ss_pred             cEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEEE
Q 018019          105 DVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAMI  137 (362)
Q Consensus       105 ~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l~  137 (362)
                      .++++.+|.+...+ +..+++.+.+.+.++.+..
T Consensus        81 ~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~  114 (169)
T PF00535_consen   81 YILFLDDDDIISPDWLEELVEALEKNPPDVVIGS  114 (169)
T ss_dssp             EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence            89999999655544 8889998888777655443

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=93.70  E-value=1  Score=37.93  Aligned_cols=105  Identities=18%  Similarity=0.136  Sum_probs=64.9

Q ss_pred             eeeCCc-chHHHHHHHHHhC----CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019           29 LPVANR-PVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (362)
Q Consensus        29 lpv~g~-plI~~~l~~l~~~----gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~  103 (362)
                      +|..+. ..|..+|+.+.+.    ...+|+|+-+...  +...+.+.++......+.++..+...|.+.++..+.+....
T Consensus         3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~--d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~g   80 (185)
T cd04179           3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGST--DGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAARG   80 (185)
T ss_pred             ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCC--CChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhcC
Confidence            455555 5677777887665    2567777755332  23333343321111234556566678888998888887766


Q ss_pred             CcEEEEeCCccc-CCChHHHHHHHHhcCCeEEE
Q 018019          104 KDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus       104 ~~~lv~~~D~i~-~~~l~~~l~~h~~~~a~~t~  135 (362)
                      +.++++.+|... +..+..+++.....+.++.+
T Consensus        81 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~  113 (185)
T cd04179          81 DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVI  113 (185)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence            789999999544 44478888875555655543

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=93.46  E-value=2.2  Score=37.95  Aligned_cols=103  Identities=21%  Similarity=0.253  Sum_probs=67.8

Q ss_pred             CCCCCe--eeeeeCCc-chHHHHHHHHHhCCC----CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHH
Q 018019           21 SKEVPK--ALLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGA   93 (362)
Q Consensus        21 t~~~pK--~llpv~g~-plI~~~l~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~a   93 (362)
                      ....|+  -++|..|. ..|...|+.+.....    -+++|+.....  +...+.+.+.. .. .+.++..+...|-+.+
T Consensus        25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~-~~-~v~~i~~~~~~g~~~a  100 (251)
T cd06439          25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGST--DGTAEIAREYA-DK-GVKLLRFPERRGKAAA  100 (251)
T ss_pred             CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC--ccHHHHHHHHh-hC-cEEEEEcCCCCChHHH
Confidence            455666  56788887 678888888866532    25777665332  23344444321 12 4666666666888889


Q ss_pred             HHHHHHhcCCCcEEEEeCCcccCCC-hHHHHHHHH
Q 018019           94 LRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHR  127 (362)
Q Consensus        94 l~~~~~~i~~~~~lv~~~D~i~~~~-l~~~l~~h~  127 (362)
                      +..+.+....+.++++.+|.+...+ +..+++...
T Consensus       101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~  135 (251)
T cd06439         101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFA  135 (251)
T ss_pred             HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhc
Confidence            8888887777789999999766544 777777764

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=93.24  E-value=2.3  Score=34.68  Aligned_cols=97  Identities=15%  Similarity=0.104  Sum_probs=64.6

Q ss_pred             eeeeCCc-chHHHHHHHHHhCC--CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019           28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~  104 (362)
                      ++|.-++ .++..+++++.+..  ..+++|+.....  +...+.+....   ..+.++..+...|.+.++..+.+....+
T Consensus         2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~--~~~~~~~~~~~---~~~~~~~~~~~~g~~~a~n~~~~~~~~~   76 (166)
T cd04186           2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNAST--DGSVELLRELF---PEVRLIRNGENLGFGAGNNQGIREAKGD   76 (166)
T ss_pred             EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCC--chHHHHHHHhC---CCeEEEecCCCcChHHHhhHHHhhCCCC
Confidence            4566676 78999999997763  456777765432  23344444332   1355666566789999999888888767


Q ss_pred             cEEEEeCCcccCCC-hHHHHHHHHhc
Q 018019          105 DVLVVSGDLVSDVP-PGAVTAAHRRH  129 (362)
Q Consensus       105 ~~lv~~~D~i~~~~-l~~~l~~h~~~  129 (362)
                      .++++..|.+...+ +..+++.+...
T Consensus        77 ~i~~~D~D~~~~~~~l~~~~~~~~~~  102 (166)
T cd04186          77 YVLLLNPDTVVEPGALLELLDAAEQD  102 (166)
T ss_pred             EEEEECCCcEECccHHHHHHHHHHhC
Confidence            78888888655444 67777665443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=92.48  E-value=0.068  Score=47.84  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=20.0

Q ss_pred             EEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 018019          304 VYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (362)
Q Consensus       304 ~~~~~~~~y~~rin~~~~Y~~~n~~~l~~  332 (362)
                      +|.+  +|||.-|   .+|.++|+++|+.
T Consensus        42 ~~~~--~gyW~Di---~~yl~an~diL~~   65 (231)
T TIGR03532        42 SGVL--FGEWEDI---EPFIEANKDKIKD   65 (231)
T ss_pred             cEEE--EEeHHHH---HHHHHHhHhhhcc
Confidence            4555  7888777   9999999999975

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=92.46  E-value=3.8  Score=34.89  Aligned_cols=99  Identities=17%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             eeeeCCcc---hHHHHHHHHHhCC--CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcC
Q 018019           28 LLPVANRP---VLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT  102 (362)
Q Consensus        28 llpv~g~p---lI~~~l~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~  102 (362)
                      ++|+.++.   .|..+|+.+....  ..+++|+-.... .+...+.+..+. .+.++.++..+...|.+.+...+.....
T Consensus         3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss-~d~t~~~~~~~~-~~~~i~~i~~~~n~G~~~a~N~g~~~a~   80 (201)
T cd04195           3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPV-TQSLNEVLEEFK-RKLPLKVVPLEKNRGLGKALNEGLKHCT   80 (201)
T ss_pred             EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCC-chhHHHHHHHHH-hcCCeEEEEcCccccHHHHHHHHHHhcC
Confidence            56777653   8999999997754  246666644321 234444444332 1234666655566899999888887776


Q ss_pred             CCcEEEEeCCccc-CCChHHHHHHHHh
Q 018019          103 AKDVLVVSGDLVS-DVPPGAVTAAHRR  128 (362)
Q Consensus       103 ~~~~lv~~~D~i~-~~~l~~~l~~h~~  128 (362)
                      .+.++++.+|.+. +.-+..+++...+
T Consensus        81 gd~i~~lD~Dd~~~~~~l~~~~~~~~~  107 (201)
T cd04195          81 YDWVARMDTDDISLPDRFEKQLDFIEK  107 (201)
T ss_pred             CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence            6778899999644 4457777776644

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=92.30  E-value=1.8  Score=37.74  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=64.0

Q ss_pred             eeeeCCc-chHHHHHHHHHhCC---CCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019           28 LLPVANR-PVLSYVLEQLELSN---IKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~g---i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~  103 (362)
                      ++|.-+. ..|..+|+.+.+.-   .-+|+||-+...  +...+.++++......+.++......|-+.++..+.+....
T Consensus         2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~--d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a~g   79 (224)
T cd06442           2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSP--DGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAARG   79 (224)
T ss_pred             eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--CChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHcCC
Confidence            4566666 67788888886643   245666654321  22233333321111234555556678999999888887777


Q ss_pred             CcEEEEeCCcccCC-ChHHHHHHHHhcCCeE
Q 018019          104 KDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV  133 (362)
Q Consensus       104 ~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~  133 (362)
                      +.++++.+|..... .+..+++.....+.++
T Consensus        80 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~  110 (224)
T cd06442          80 DVIVVMDADLSHPPEYIPELLEAQLEGGADL  110 (224)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcCCCCE
Confidence            78889999965543 4777777655555554

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=92.05  E-value=2  Score=37.30  Aligned_cols=106  Identities=20%  Similarity=0.198  Sum_probs=62.2

Q ss_pred             eeeeCCc-chHHHHHHHHHhC------CCCeEEEEccCcchHHHHHHHHHhhhcCC-cceEEEEcCCCCCHHHHHHHHHH
Q 018019           28 LLPVANR-PVLSYVLEQLELS------NIKDLIVVVEGADAALRVGGWISAAYVDR-LHVEVATVPEDVGTAGALRAIAH   99 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~------gi~~v~vv~~~~~~~~~i~~~~~~~~~~~-~~i~i~~~~~~~gt~~al~~~~~   99 (362)
                      .+|.-|. .-|..+|+.+.+.      ..-+|+|+-+...  +...+.++++.... ..+.++......|.+.++..+.+
T Consensus         2 iip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~--D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~   79 (211)
T cd04188           2 VIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSK--DGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGML   79 (211)
T ss_pred             EEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC--CchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHH
Confidence            3566664 5666666666543      2336666644321  12223333221111 11355555566899999999988


Q ss_pred             hcCCCcEEEEeCCcccC-CChHHHHHHHHhcCCeEEE
Q 018019          100 HLTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus       100 ~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~~~a~~t~  135 (362)
                      ....+.++++.+|...+ ..+..+++.....+.++.+
T Consensus        80 ~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~  116 (211)
T cd04188          80 AARGDYILFADADLATPFEELEKLEEALKTSGYDIAI  116 (211)
T ss_pred             HhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence            77778899999996544 4577787775555555544

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=91.65  E-value=3.3  Score=33.64  Aligned_cols=99  Identities=22%  Similarity=0.206  Sum_probs=61.3

Q ss_pred             eeeeCCc-chHHHHHHHHHhCC--CCeEEEEccCcchHHHHHHHHHhhhcCC-cceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019           28 LLPVANR-PVLSYVLEQLELSN--IKDLIVVVEGADAALRVGGWISAAYVDR-LHVEVATVPEDVGTAGALRAIAHHLTA  103 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~g--i~~v~vv~~~~~~~~~i~~~~~~~~~~~-~~i~i~~~~~~~gt~~al~~~~~~i~~  103 (362)
                      .+|.-++ ..|..+|+.+.+..  ..+++|+-....  +...+.+..+.... ..+.+.......|.+.++..+.+....
T Consensus         2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~   79 (180)
T cd06423           2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGST--DDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKG   79 (180)
T ss_pred             eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCc--cchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCC
Confidence            3566676 78889999998764  346666655332  23333444322111 123344445568888888888888777


Q ss_pred             CcEEEEeCCcccCCC-hHHHHHHHHh
Q 018019          104 KDVLVVSGDLVSDVP-PGAVTAAHRR  128 (362)
Q Consensus       104 ~~~lv~~~D~i~~~~-l~~~l~~h~~  128 (362)
                      +.++++.+|.+...+ +..++..+.+
T Consensus        80 ~~i~~~D~D~~~~~~~l~~~~~~~~~  105 (180)
T cd06423          80 DIVVVLDADTILEPDALKRLVVPFFA  105 (180)
T ss_pred             CEEEEECCCCCcChHHHHHHHHHhcc
Confidence            788999999655444 6666455544

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=91.64  E-value=4.2  Score=36.12  Aligned_cols=106  Identities=17%  Similarity=0.150  Sum_probs=64.5

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCCC----eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEc--CCCCCHHHHHHHHHHh
Q 018019           28 LLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATV--PEDVGTAGALRAIAHH  100 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~--~~~~gt~~al~~~~~~  100 (362)
                      ++|.-|. -.|..+|+++.+....    +|+|+.....  +...+.++++.. .....++..  ....|-+.++..+.+.
T Consensus         6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~--d~t~~i~~~~~~-~~~~~i~~~~~~~~~G~~~a~n~g~~~   82 (241)
T cd06427           6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDD--EETIAAARALRL-PSIFRVVVVPPSQPRTKPKACNYALAF   82 (241)
T ss_pred             EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCC--chHHHHHHHhcc-CCCeeEEEecCCCCCchHHHHHHHHHh
Confidence            4677665 6788888888765432    4666654322  233344443311 112333332  3456888899988887


Q ss_pred             cCCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 018019          101 LTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM  136 (362)
Q Consensus       101 i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l  136 (362)
                      ...+.++++.+|.+...+ +..+++.+.+.+.++.++
T Consensus        83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~  119 (241)
T cd06427          83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV  119 (241)
T ss_pred             cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence            766778899999766554 678888776544555544

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=91.16  E-value=4.2  Score=34.66  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=59.8

Q ss_pred             eeeeCC-c-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019           28 LLPVAN-R-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (362)
Q Consensus        28 llpv~g-~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~  103 (362)
                      .+|.-+ . ..|..+|+++.+....  +|+|+-+... ...+...+..+......+.++..+...|.+.++-.+.+....
T Consensus         6 ii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~-d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~   84 (202)
T cd04184           6 VMPVYNTPEKYLREAIESVRAQTYPNWELCIADDAST-DPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELATG   84 (202)
T ss_pred             EEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCC-ChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhcC
Confidence            355544 4 6788888888765432  5666644321 112333333221112245555556668888888888877766


Q ss_pred             CcEEEEeCCcccCCC-hHHHHHHH
Q 018019          104 KDVLVVSGDLVSDVP-PGAVTAAH  126 (362)
Q Consensus       104 ~~~lv~~~D~i~~~~-l~~~l~~h  126 (362)
                      +.++++.+|.+...+ +..+++.+
T Consensus        85 d~i~~ld~D~~~~~~~l~~~~~~~  108 (202)
T cd04184          85 EFVALLDHDDELAPHALYEVVKAL  108 (202)
T ss_pred             CEEEEECCCCcCChHHHHHHHHHH
Confidence            778889899655544 77788776

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=91.06  E-value=3  Score=36.80  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=62.3

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCC----CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcC
Q 018019           28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT  102 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~  102 (362)
                      ++|.-|+ +.|..+|+.+.....    -+|+|+-+...  +...+.++........+.++. ....|-+.++..+.+...
T Consensus         5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~--d~~~~~~~~~~~~~~~v~~i~-~~~~~~~~a~N~g~~~a~   81 (249)
T cd02525           5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGST--DGTREIVQEYAAKDPRIRLID-NPKRIQSAGLNIGIRNSR   81 (249)
T ss_pred             EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCC--ccHHHHHHHHHhcCCeEEEEe-CCCCCchHHHHHHHHHhC
Confidence            4566665 778888999976644    36776654332  234444443321212344443 334566677777777776


Q ss_pred             CCcEEEEeCCcccCC-ChHHHHHHHHhcCCeE
Q 018019          103 AKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV  133 (362)
Q Consensus       103 ~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~  133 (362)
                      .+.++++.+|.+... -+..+++.+.+.+.++
T Consensus        82 ~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~  113 (249)
T cd02525          82 GDIIIRVDAHAVYPKDYILELVEALKRTGADN  113 (249)
T ss_pred             CCEEEEECCCccCCHHHHHHHHHHHhcCCCCE
Confidence            677889999965543 4777887665555443

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>PRK10073 putative glycosyl transferase; Provisional

Probab=90.86  E-value=3.2  Score=39.16  Aligned_cols=106  Identities=17%  Similarity=0.120  Sum_probs=66.8

Q ss_pred             eeeeeCCc-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019           27 ALLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (362)
Q Consensus        27 ~llpv~g~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~  103 (362)
                      -.+|+-|. ..|..+|+++......  +|+|+-....  +...+.+.++......+.++.+ +..|.+.+.-.+++....
T Consensus        10 VIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgSt--D~t~~i~~~~~~~~~~i~vi~~-~n~G~~~arN~gl~~a~g   86 (328)
T PRK10073         10 IIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGST--DNSVEIAKHYAENYPHVRLLHQ-ANAGVSVARNTGLAVATG   86 (328)
T ss_pred             EEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCC--ccHHHHHHHHHhhCCCEEEEEC-CCCChHHHHHHHHHhCCC
Confidence            34677665 7999999999876443  5666644221  1222333332111124555543 457888888888887777


Q ss_pred             CcEEEEeCC-cccCCChHHHHHHHHhcCCeEEE
Q 018019          104 KDVLVVSGD-LVSDVPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus       104 ~~~lv~~~D-~i~~~~l~~~l~~h~~~~a~~t~  135 (362)
                      ++++++.+| .+.+.-+..+++...+.+.++.+
T Consensus        87 ~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~  119 (328)
T PRK10073         87 KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ  119 (328)
T ss_pred             CEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence            788999998 45555577888877666667654

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=89.81  E-value=8.9  Score=35.35  Aligned_cols=102  Identities=15%  Similarity=0.042  Sum_probs=63.8

Q ss_pred             eeeeCCc--chHHHHHHHHHhCCC----CeEEEEccCcchHHHHHHHHHhhh-c-CCcceEEEEcCCCCCHHHHHHHHHH
Q 018019           28 LLPVANR--PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAY-V-DRLHVEVATVPEDVGTAGALRAIAH   99 (362)
Q Consensus        28 llpv~g~--plI~~~l~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~-~-~~~~i~i~~~~~~~gt~~al~~~~~   99 (362)
                      .+|.-|.  ..|..+|+++....-    .+|+||-+...  +...+.+.... . ....+.++..+...|-+.+.-.+++
T Consensus         3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~--d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~   80 (299)
T cd02510           3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSD--KPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGAR   80 (299)
T ss_pred             EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC--chHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3566665  488888888876431    37777755322  12222221110 0 1124667666667888888888887


Q ss_pred             hcCCCcEEEEeCCcccC-CChHHHHHHHHhcCC
Q 018019          100 HLTAKDVLVVSGDLVSD-VPPGAVTAAHRRHDA  131 (362)
Q Consensus       100 ~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~~~a  131 (362)
                      ....+.++++++|.+.. .-+..+++.......
T Consensus        81 ~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~  113 (299)
T cd02510          81 AATGDVLVFLDSHCEVNVGWLEPLLARIAENRK  113 (299)
T ss_pred             HccCCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence            77678899999996554 448888888766544

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=89.63  E-value=4.5  Score=33.92  Aligned_cols=102  Identities=22%  Similarity=0.199  Sum_probs=57.7

Q ss_pred             eeeCCc-chHHHHHHHHHhC-----CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcC
Q 018019           29 LPVANR-PVLSYVLEQLELS-----NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLT  102 (362)
Q Consensus        29 lpv~g~-plI~~~l~~l~~~-----gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~  102 (362)
                      +|.-+. ..|..+|+.+.+.     ..-+|+|+-+...  +...+.++.+......+.++......|.+.++..+.+...
T Consensus         3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a~   80 (181)
T cd04187           3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGST--DRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHAR   80 (181)
T ss_pred             EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCC--ccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhcC
Confidence            455554 3455555544321     2236777655322  1222333322111124556555556889999998888777


Q ss_pred             CCcEEEEeCCcccCC-ChHHHHHHHHhcCCeE
Q 018019          103 AKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV  133 (362)
Q Consensus       103 ~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~  133 (362)
                      .+.++++.+|...+. .+..+++. ...+.++
T Consensus        81 ~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~  111 (181)
T cd04187          81 GDAVITMDADLQDPPELIPEMLAK-WEEGYDV  111 (181)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcE
Confidence            788899999965544 46777776 3444444

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=88.85  E-value=7.6  Score=38.29  Aligned_cols=107  Identities=17%  Similarity=0.169  Sum_probs=67.3

Q ss_pred             eeeeeCCc-chHHHHHHHHHhCCC--CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019           27 ALLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (362)
Q Consensus        27 ~llpv~g~-plI~~~l~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~  103 (362)
                      -++|..|. .-|..+++++.+...  -+|+|+.+...  +...+.+.+.......+.++......|-+.++..+......
T Consensus        79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~--D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl~~a~~  156 (444)
T PRK14583         79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSS--DDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGAAAARS  156 (444)
T ss_pred             EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHHHhCCC
Confidence            56788887 678889999876532  36777755332  22223333221112246666656668888999888877766


Q ss_pred             CcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 018019          104 KDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM  136 (362)
Q Consensus       104 ~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l  136 (362)
                      +.++++.+|.+.+.+ +..+++.+.+ +..+.++
T Consensus       157 d~iv~lDAD~~~~~d~L~~lv~~~~~-~~~~g~v  189 (444)
T PRK14583        157 EYLVCIDGDALLDKNAVPYLVAPLIA-NPRTGAV  189 (444)
T ss_pred             CEEEEECCCCCcCHHHHHHHHHHHHh-CCCeEEE
Confidence            789999999766554 6677766543 3334333

>PRK10018 putative glycosyl transferase; Provisional

Probab=87.68  E-value=17  Score=33.42  Aligned_cols=99  Identities=9%  Similarity=0.095  Sum_probs=62.9

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019           28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~  104 (362)
                      .+|.-|. ..|..+|+++.+....  +++|+-......+.+.+++...  ....+.++..+...|.+.+.-.+++....+
T Consensus        10 Iip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~--~~~ri~~i~~~~n~G~~~a~N~gi~~a~g~   87 (279)
T PRK10018         10 YMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTAL--NDPRITYIHNDINSGACAVRNQAIMLAQGE   87 (279)
T ss_pred             EEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHc--CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            3566665 7788899888766443  5666644222123444544432  112466666566789888888888877777


Q ss_pred             cEEEEeCCccc-CCChHHHHHHHHh
Q 018019          105 DVLVVSGDLVS-DVPPGAVTAAHRR  128 (362)
Q Consensus       105 ~~lv~~~D~i~-~~~l~~~l~~h~~  128 (362)
                      .++++.+|-+. +..+..+++...+
T Consensus        88 ~I~~lDaDD~~~p~~l~~~~~~~~~  112 (279)
T PRK10018         88 YITGIDDDDEWTPNRLSVFLAHKQQ  112 (279)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHh
Confidence            88899998544 4457777776544

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=87.64  E-value=7.4  Score=32.70  Aligned_cols=96  Identities=18%  Similarity=0.103  Sum_probs=59.3

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019           28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~  104 (362)
                      .+|.-++ ..|..+|+++.+....  +|+|+-+...  +...+.+.+.. ..  +..+......|.+.++..+++....+
T Consensus         3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~--d~~~~~~~~~~-~~--~~~~~~~~~~g~~~a~n~~~~~a~~~   77 (202)
T cd06433           3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGST--DGTVDIIKKYE-DK--ITYWISEPDKGIYDAMNKGIALATGD   77 (202)
T ss_pred             EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCC--ccHHHHHHHhH-hh--cEEEEecCCcCHHHHHHHHHHHcCCC
Confidence            3555555 6888999999776554  5666633221  23344444321 11  22333345678889998888887777


Q ss_pred             cEEEEeCCc-ccCCChHHHHHHHHh
Q 018019          105 DVLVVSGDL-VSDVPPGAVTAAHRR  128 (362)
Q Consensus       105 ~~lv~~~D~-i~~~~l~~~l~~h~~  128 (362)
                      +++++.+|. +.+..+..++.....
T Consensus        78 ~v~~ld~D~~~~~~~~~~~~~~~~~  102 (202)
T cd06433          78 IIGFLNSDDTLLPGALLAVVAAFAE  102 (202)
T ss_pred             EEEEeCCCcccCchHHHHHHHHHHh
Confidence            888999885 555567777744443

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK11204 N-glycosyltransferase; Provisional

Probab=86.79  E-value=9.6  Score=37.05  Aligned_cols=100  Identities=17%  Similarity=0.224  Sum_probs=64.3

Q ss_pred             eeeeeCCc-chHHHHHHHHHhCCC--CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019           27 ALLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (362)
Q Consensus        27 ~llpv~g~-plI~~~l~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~  103 (362)
                      -++|.-|. ..|..+++++.+...  -+|+|+-+...  +...+.+++......++.++..++..|-++++..+.+....
T Consensus        58 ViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~--d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~~~a~~  135 (420)
T PRK11204         58 ILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSS--DNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGAAAARS  135 (420)
T ss_pred             EEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            35677776 788999999877543  36666654322  22223333221111246666656668889999988887767


Q ss_pred             CcEEEEeCCcccCCC-hHHHHHHHHh
Q 018019          104 KDVLVVSGDLVSDVP-PGAVTAAHRR  128 (362)
Q Consensus       104 ~~~lv~~~D~i~~~~-l~~~l~~h~~  128 (362)
                      +.++++.+|.+.+.+ +..+++.+.+
T Consensus       136 d~i~~lDaD~~~~~d~L~~l~~~~~~  161 (420)
T PRK11204        136 EYLVCIDGDALLDPDAAAYMVEHFLH  161 (420)
T ss_pred             CEEEEECCCCCCChhHHHHHHHHHHh
Confidence            789999999755544 7777777644

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=86.63  E-value=8.4  Score=34.28  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=61.6

Q ss_pred             eeeeCCc-chHHHHHHHHHhC----CCCeEEEEccCcchHHHHHHHHHhhhcC--CcceEEEEcCCCCCHHHHHHHHHHh
Q 018019           28 LLPVANR-PVLSYVLEQLELS----NIKDLIVVVEGADAALRVGGWISAAYVD--RLHVEVATVPEDVGTAGALRAIAHH  100 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~----gi~~v~vv~~~~~~~~~i~~~~~~~~~~--~~~i~i~~~~~~~gt~~al~~~~~~  100 (362)
                      .+|.-|. .-|..+++.+.+.    .--+|+|+-+...  +...+.+.++...  ...+.++..+...|-+.++..+...
T Consensus        14 vIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~--D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~   91 (243)
T PLN02726         14 IVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSP--DGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKH   91 (243)
T ss_pred             EEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCC--CCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHH
Confidence            4566665 5666666666432    1225666644221  2223333322110  1234444445567888899888887


Q ss_pred             cCCCcEEEEeCCcccCC-ChHHHHHHHHhcCCeEEE
Q 018019          101 LTAKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus       101 i~~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~t~  135 (362)
                      ...+.++++.+|...+. .+..+++...+.++++..
T Consensus        92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~  127 (243)
T PLN02726         92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT  127 (243)
T ss_pred             cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence            76678899999975543 477788776666666543

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=86.44  E-value=18  Score=35.66  Aligned_cols=100  Identities=16%  Similarity=0.105  Sum_probs=62.6

Q ss_pred             eeeeeCCc-chHHHHHHHHHhCCCC----eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhc
Q 018019           27 ALLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL  101 (362)
Q Consensus        27 ~llpv~g~-plI~~~l~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i  101 (362)
                      -++|.-|. ..|..+++++.+....    +|+|+-+...  |...+.+.+.......+.+...+...|-+.|+..+.+..
T Consensus        53 VIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~St--D~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl~~s  130 (439)
T TIGR03111        53 IIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQST--DDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIYNS  130 (439)
T ss_pred             EEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCC--hhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHHHc
Confidence            34677776 8889999999776532    4555544221  232333322111112344544455688899999998877


Q ss_pred             CCCcEEEEeCCcccCCC-hHHHHHHHHh
Q 018019          102 TAKDVLVVSGDLVSDVP-PGAVTAAHRR  128 (362)
Q Consensus       102 ~~~~~lv~~~D~i~~~~-l~~~l~~h~~  128 (362)
                      ..+.++++.+|.+.+.+ +..+++.+.+
T Consensus       131 ~g~~v~~~DaD~~~~~d~L~~l~~~f~~  158 (439)
T TIGR03111       131 IGKYIIHIDSDGKLHKDAIKNMVTRFEN  158 (439)
T ss_pred             cCCEEEEECCCCCcChHHHHHHHHHHHh
Confidence            77778899999766554 6777777654

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=85.16  E-value=14  Score=31.98  Aligned_cols=102  Identities=14%  Similarity=0.117  Sum_probs=58.8

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCC----CeEEEEccCcchHHHHHHHHH-hhhcCCcceEEEEcC--CCCCHHHHHHHHHH
Q 018019           28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWIS-AAYVDRLHVEVATVP--EDVGTAGALRAIAH   99 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~-~~~~~~~~i~i~~~~--~~~gt~~al~~~~~   99 (362)
                      ++|..|+ ..|..+|+.+.....    -+|+|+-+...  +...+.+. ........+.++..+  ...|-+.++..+..
T Consensus         2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~   79 (229)
T cd04192           2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHST--DGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIK   79 (229)
T ss_pred             EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCC--cChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHH
Confidence            4677776 678899999866532    35666654321  12223332 111112244444333  23566677777777


Q ss_pred             hcCCCcEEEEeCCcccCCC-hHHHHHHHHhcCC
Q 018019          100 HLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDA  131 (362)
Q Consensus       100 ~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a  131 (362)
                      ....+.++++.+|.+...+ +..+++.+...+.
T Consensus        80 ~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~  112 (229)
T cd04192          80 AAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQI  112 (229)
T ss_pred             HhcCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence            6666788999999655544 6777776655443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=84.74  E-value=26  Score=30.59  Aligned_cols=97  Identities=16%  Similarity=0.179  Sum_probs=55.5

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCCC----eEEEEccCcch-HHHHHHHHHhhhcCCcceEEEEcCCCCC-HHHHHHHHHHh
Q 018019           28 LLPVANR-PVLSYVLEQLELSNIK----DLIVVVEGADA-ALRVGGWISAAYVDRLHVEVATVPEDVG-TAGALRAIAHH  100 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi~----~v~vv~~~~~~-~~~i~~~~~~~~~~~~~i~i~~~~~~~g-t~~al~~~~~~  100 (362)
                      .+|.-|. ..|...|+.+.+....    +|+|+-+..+. .+.+.++...+......+..+...+..| .+.++..+...
T Consensus         6 iIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~   85 (232)
T cd06437           6 QLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKV   85 (232)
T ss_pred             EEecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHh
Confidence            4667665 7889999999764322    45444332221 1223333333221123344444344456 46778777777


Q ss_pred             cCCCcEEEEeCCcccCCC-hHHHHH
Q 018019          101 LTAKDVLVVSGDLVSDVP-PGAVTA  124 (362)
Q Consensus       101 i~~~~~lv~~~D~i~~~~-l~~~l~  124 (362)
                      ...+.++++.+|.+...+ +..+..
T Consensus        86 a~~~~i~~~DaD~~~~~~~l~~~~~  110 (232)
T cd06437          86 AKGEYVAIFDADFVPPPDFLQKTPP  110 (232)
T ss_pred             CCCCEEEEEcCCCCCChHHHHHhhh
Confidence            767889999999766555 555443

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]

Probab=83.77  E-value=23  Score=30.49  Aligned_cols=105  Identities=14%  Similarity=0.154  Sum_probs=63.0

Q ss_pred             CcchHHHHHHHH-HhCCCCeEEEEccCc--chHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEE
Q 018019           33 NRPVLSYVLEQL-ELSNIKDLIVVVEGA--DAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVV  109 (362)
Q Consensus        33 g~plI~~~l~~l-~~~gi~~v~vv~~~~--~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~  109 (362)
                      |-|++-|.+..+ .+.|.+--+|++...  +-...+.+.++..+. ..++.+..-....|.+.|...++.+...+.++++
T Consensus        17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg-~d~i~l~pR~~klGLgtAy~hgl~~a~g~fiviM   95 (238)
T KOG2978|consen   17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYG-EDNILLKPRTKKLGLGTAYIHGLKHATGDFIVIM   95 (238)
T ss_pred             CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhC-CCcEEEEeccCcccchHHHHhhhhhccCCeEEEE
Confidence            346777777666 445665444444322  111133333433332 1234444334568888888899888876778889


Q ss_pred             eCCcc-cCCChHHHHHHHHhcCCeEEEEEe
Q 018019          110 SGDLV-SDVPPGAVTAAHRRHDAVVTAMIC  138 (362)
Q Consensus       110 ~~D~i-~~~~l~~~l~~h~~~~a~~t~l~~  138 (362)
                      .+|+- -+.-+.++++..++.+-+++.-+.
T Consensus        96 DaDlsHhPk~ipe~i~lq~~~~~div~GTR  125 (238)
T KOG2978|consen   96 DADLSHHPKFIPEFIRLQKEGNYDIVLGTR  125 (238)
T ss_pred             eCccCCCchhHHHHHHHhhccCcceeeeee
Confidence            99963 345577888887776667766544

>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]

Probab=83.73  E-value=1.3  Score=43.24  Aligned_cols=38  Identities=29%  Similarity=0.547  Sum_probs=30.5

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCC---cchHHHHHHHH
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN---RPVLSYVLEQL   44 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g---~plI~~~l~~l   44 (362)
                      ..++++|||.|||+    ....||.+.|++.   +.++++..+.+
T Consensus        98 ~a~~llaGgqgtRL----g~~~pkg~~~~G~~~~~slf~~qae~i  138 (477)
T KOG2388|consen   98 VAVVLLAGGQGTRL----GSSGPKGCYPIGLPSGKSLFQIQAERI  138 (477)
T ss_pred             ceEEEeccCceeee----ccCCCcceeecCCccccchhhhhHHHH
Confidence            46899999999999    8899999999984   45776655544

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional

Probab=83.42  E-value=16  Score=34.46  Aligned_cols=107  Identities=17%  Similarity=0.213  Sum_probs=61.4

Q ss_pred             eeeCCc-chHHHHHHHHHhC----------CCCeEEEEccC-cchHHH-HHHHHHhhhcCCcceEEEEcCCCCCHHHHHH
Q 018019           29 LPVANR-PVLSYVLEQLELS----------NIKDLIVVVEG-ADAALR-VGGWISAAYVDRLHVEVATVPEDVGTAGALR   95 (362)
Q Consensus        29 lpv~g~-plI~~~l~~l~~~----------gi~~v~vv~~~-~~~~~~-i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~   95 (362)
                      +|.-|. +-|..+|+.+.+.          +--+|+||-+. .+.... +.++.........++.++..+...|-+.|+.
T Consensus        76 IP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~  155 (333)
T PTZ00260         76 IPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVR  155 (333)
T ss_pred             EeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHH
Confidence            566664 6677777766431          12467776542 221112 2222221100112466666666789999999


Q ss_pred             HHHHhcCCCcEEEEeCCcccC-CChHHHHHHHHh---cCCeEEE
Q 018019           96 AIAHHLTAKDVLVVSGDLVSD-VPPGAVTAAHRR---HDAVVTA  135 (362)
Q Consensus        96 ~~~~~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~---~~a~~t~  135 (362)
                      .+......+.++++.+|...+ .++..+++...+   .+.++.+
T Consensus       156 ~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~  199 (333)
T PTZ00260        156 IGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVF  199 (333)
T ss_pred             HHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEE
Confidence            888776667788999997554 456777666543   4444433

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

Probab=82.23  E-value=33  Score=30.13  Aligned_cols=94  Identities=16%  Similarity=0.075  Sum_probs=60.1

Q ss_pred             eeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCCc
Q 018019           27 ALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD  105 (362)
Q Consensus        27 ~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~  105 (362)
                      .++|.-|. ..|..+|+.+... .++|+|+-+...  +...+.++.     .++.++.. ...|-+.+...+++....+.
T Consensus         4 vii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gSt--D~t~~i~~~-----~~~~v~~~-~~~g~~~~~n~~~~~a~~d~   74 (229)
T cd02511           4 VVIITKNEERNIERCLESVKWA-VDEIIVVDSGST--DRTVEIAKE-----YGAKVYQR-WWDGFGAQRNFALELATNDW   74 (229)
T ss_pred             EEEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCC--ccHHHHHHH-----cCCEEEEC-CCCChHHHHHHHHHhCCCCE
Confidence            35666665 7888889888654 367887765332  233344442     24556554 55788888877888777778


Q ss_pred             EEEEeCCcccCCC-hHHHHHHHHhc
Q 018019          106 VLVVSGDLVSDVP-PGAVTAAHRRH  129 (362)
Q Consensus       106 ~lv~~~D~i~~~~-l~~~l~~h~~~  129 (362)
                      ++++.+|-+...+ +..+.+...+.
T Consensus        75 vl~lDaD~~~~~~~~~~l~~~~~~~   99 (229)
T cd02511          75 VLSLDADERLTPELADEILALLATD   99 (229)
T ss_pred             EEEEeCCcCcCHHHHHHHHHHHhCC
Confidence            9999999655544 55555544433

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=82.21  E-value=18  Score=31.60  Aligned_cols=97  Identities=16%  Similarity=0.165  Sum_probs=57.7

Q ss_pred             eeeeCCc-c-hHHHHHHHHHhCCC--CeEEEEccCcchH---HHHHHHHHhhhcCCcceEEEEcCCCCCH-HHHHHHHHH
Q 018019           28 LLPVANR-P-VLSYVLEQLELSNI--KDLIVVVEGADAA---LRVGGWISAAYVDRLHVEVATVPEDVGT-AGALRAIAH   99 (362)
Q Consensus        28 llpv~g~-p-lI~~~l~~l~~~gi--~~v~vv~~~~~~~---~~i~~~~~~~~~~~~~i~i~~~~~~~gt-~~al~~~~~   99 (362)
                      ++|.-|. | +|...|+++.+...  -+|+|+-+.....   +.+.++....   ...+.++......|- ++++..+.+
T Consensus         3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~---~~~i~~i~~~~~~G~~~~a~n~g~~   79 (236)
T cd06435           3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL---GERFRFFHVEPLPGAKAGALNYALE   79 (236)
T ss_pred             eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHh---CCcEEEEEcCCCCCCchHHHHHHHH
Confidence            4677776 3 79999999987653  3566665433211   1222333321   123545544444563 778888877


Q ss_pred             hcC--CCcEEEEeCCcccCC-ChHHHHHHHH
Q 018019          100 HLT--AKDVLVVSGDLVSDV-PPGAVTAAHR  127 (362)
Q Consensus       100 ~i~--~~~~lv~~~D~i~~~-~l~~~l~~h~  127 (362)
                      ...  .+.++++.+|.+.+. -+..++....
T Consensus        80 ~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~  110 (236)
T cd06435          80 RTAPDAEIIAVIDADYQVEPDWLKRLVPIFD  110 (236)
T ss_pred             hcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence            654  367889999965544 4777777654

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=82.20  E-value=29  Score=29.11  Aligned_cols=97  Identities=24%  Similarity=0.245  Sum_probs=58.1

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCC----CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE--cCCCCCHHHHHHHHHHh
Q 018019           28 LLPVANR-PVLSYVLEQLELSNI----KDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT--VPEDVGTAGALRAIAHH  100 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi----~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~--~~~~~gt~~al~~~~~~  100 (362)
                      ++|.-|. ..|.-+|+++.+...    -+|+|+.....  +...+.+...     ...++.  .....|.+.++..+...
T Consensus         2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~--D~t~~~~~~~-----~~~~~~~~~~~~~gk~~aln~g~~~   74 (183)
T cd06438           2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCT--DDTAQVARAA-----GATVLERHDPERRGKGYALDFGFRH   74 (183)
T ss_pred             EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCC--chHHHHHHHc-----CCeEEEeCCCCCCCHHHHHHHHHHH
Confidence            4677775 788888888876533    35666655332  2333444332     122222  23346788888877665


Q ss_pred             cC-----CCcEEEEeCCcccCCC-hHHHHHHHHhcCCe
Q 018019          101 LT-----AKDVLVVSGDLVSDVP-PGAVTAAHRRHDAV  132 (362)
Q Consensus       101 i~-----~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~  132 (362)
                      ..     .+.++++.+|...+.+ +..++..+.. +.+
T Consensus        75 a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~  111 (183)
T cd06438          75 LLNLADDPDAVVVFDADNLVDPNALEELNARFAA-GAR  111 (183)
T ss_pred             HHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCC
Confidence            52     4568899999766554 6777776643 444

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=82.19  E-value=19  Score=30.63  Aligned_cols=96  Identities=14%  Similarity=0.115  Sum_probs=58.0

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCC--CeEEEEccCcchHHHHHHHHHhhhcCC-cceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019           28 LLPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDR-LHVEVATVPEDVGTAGALRAIAHHLTA  103 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~-~~i~i~~~~~~~gt~~al~~~~~~i~~  103 (362)
                      ++|.-|+ ..|..+|+++.+...  -+|+|+-....  +...+.++.+.... ..+.+...+...|.+.++..+......
T Consensus         3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~--d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g   80 (214)
T cd04196           3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGST--DGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADG   80 (214)
T ss_pred             EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCC--CCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCC
Confidence            4677776 688899999877543  25666654321  12223333221111 123344445567888888888776666


Q ss_pred             CcEEEEeCCccc-CCChHHHHHH
Q 018019          104 KDVLVVSGDLVS-DVPPGAVTAA  125 (362)
Q Consensus       104 ~~~lv~~~D~i~-~~~l~~~l~~  125 (362)
                      +.++++..|.+. +..+..+++.
T Consensus        81 ~~v~~ld~Dd~~~~~~l~~~~~~  103 (214)
T cd04196          81 DYVFFCDQDDIWLPDKLERLLKA  103 (214)
T ss_pred             CEEEEECCCcccChhHHHHHHHH
Confidence            778888888544 4447777776

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=81.64  E-value=20  Score=32.51  Aligned_cols=96  Identities=14%  Similarity=0.097  Sum_probs=58.4

Q ss_pred             chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhc---CCCcEEEEeC
Q 018019           35 PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---TAKDVLVVSG  111 (362)
Q Consensus        35 plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i---~~~~~lv~~~  111 (362)
                      ..|...++.+.+. ..+|+||=+.....+.+.+.+..    ...+.++..++..|-+.|...+++..   ..+.++++..
T Consensus         8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~   82 (281)
T TIGR01556         8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQ   82 (281)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECC
Confidence            4677777887765 45666665432111234333322    13566776667789998888887665   3477899999


Q ss_pred             CcccCCC-hHHHHHHHHhcCCeEEE
Q 018019          112 DLVSDVP-PGAVTAAHRRHDAVVTA  135 (362)
Q Consensus       112 D~i~~~~-l~~~l~~h~~~~a~~t~  135 (362)
                      |.+.+.+ +..+++...+.+..+.+
T Consensus        83 D~~~~~~~l~~l~~~~~~~~~~~~~  107 (281)
T TIGR01556        83 DSRPGNAFLAAQWKLLSAENGQACA  107 (281)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCceEE
Confidence            9766544 66677766544323333

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=81.64  E-value=26  Score=29.70  Aligned_cols=96  Identities=18%  Similarity=0.232  Sum_probs=56.9

Q ss_pred             eeeCCc-chHHHHHHHHHhCCC--CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhc---C
Q 018019           29 LPVANR-PVLSYVLEQLELSNI--KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---T  102 (362)
Q Consensus        29 lpv~g~-plI~~~l~~l~~~gi--~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i---~  102 (362)
                      +|.-|+ ..|..+|+.+.+...  .+|+|+-+...  +...+.+.+.. ...++.++..+...|.+.++..+....   .
T Consensus         3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~--d~t~~~~~~~~-~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~   79 (202)
T cd04185           3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNAST--DGTAEWLTSLG-DLDNIVYLRLPENLGGAGGFYEGVRRAYELG   79 (202)
T ss_pred             EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCC--cchHHHHHHhc-CCCceEEEECccccchhhHHHHHHHHHhccC
Confidence            455554 678999999977532  36666654332  24445554432 122355665566677777666655433   2


Q ss_pred             CCcEEEEeCCcccCCC-hHHHHHHHH
Q 018019          103 AKDVLVVSGDLVSDVP-PGAVTAAHR  127 (362)
Q Consensus       103 ~~~~lv~~~D~i~~~~-l~~~l~~h~  127 (362)
                      .+.++++..|.+.+.+ +..+++...
T Consensus        80 ~d~v~~ld~D~~~~~~~l~~l~~~~~  105 (202)
T cd04185          80 YDWIWLMDDDAIPDPDALEKLLAYAD  105 (202)
T ss_pred             CCEEEEeCCCCCcChHHHHHHHHHHh
Confidence            4568888899766554 566666554

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=81.00  E-value=39  Score=32.53  Aligned_cols=106  Identities=15%  Similarity=0.139  Sum_probs=61.1

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCC---CeEEEEccCcc-hHHHHHHHHHhhhcCCcceEEEEcCC-C---CCHHHHHHHHH
Q 018019           28 LLPVANR-PVLSYVLEQLELSNI---KDLIVVVEGAD-AALRVGGWISAAYVDRLHVEVATVPE-D---VGTAGALRAIA   98 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi---~~v~vv~~~~~-~~~~i~~~~~~~~~~~~~i~i~~~~~-~---~gt~~al~~~~   98 (362)
                      .+|.-|. +.|...|+.+.+...   -+|+|+-+... ...++.+.+...+.....+.++...+ +   .|-+.++..+.
T Consensus        45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~  124 (384)
T TIGR03469        45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGI  124 (384)
T ss_pred             EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHH
Confidence            5677775 899999999977543   36777655322 11122222221111111355553221 2   35556777776


Q ss_pred             HhcC-----CCcEEEEeCCcccCC-ChHHHHHHHHhcCCeE
Q 018019           99 HHLT-----AKDVLVVSGDLVSDV-PPGAVTAAHRRHDAVV  133 (362)
Q Consensus        99 ~~i~-----~~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~  133 (362)
                      +...     .+.++++.+|...+. .+..+++...+.+.++
T Consensus       125 ~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~  165 (384)
T TIGR03469       125 AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL  165 (384)
T ss_pred             HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence            6554     567889999976554 4788888776665543

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=80.60  E-value=37  Score=29.48  Aligned_cols=103  Identities=21%  Similarity=0.204  Sum_probs=63.6

Q ss_pred             eeeeCCc--chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCCc
Q 018019           28 LLPVANR--PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD  105 (362)
Q Consensus        28 llpv~g~--plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~  105 (362)
                      ++|.-|.  +.|..+|+.+.+....+|+|+.....  +...+.+.... ....+.++. ....|-+.++..+......+.
T Consensus         5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~--d~~~~~l~~~~-~~~~~~v~~-~~~~g~~~a~n~g~~~a~~d~   80 (235)
T cd06434           5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDD--EPYLSILSQTV-KYGGIFVIT-VPHPGKRRALAEGIRHVTTDI   80 (235)
T ss_pred             EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCC--hHHHHHHHhhc-cCCcEEEEe-cCCCChHHHHHHHHHHhCCCE
Confidence            4555554  68999999998765567777766432  23333332211 112343443 345777888887877776778


Q ss_pred             EEEEeCCcccCCC-hHHHHHHHHhcCCeEEEE
Q 018019          106 VLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAM  136 (362)
Q Consensus       106 ~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l  136 (362)
                      ++++.+|.+...+ +..+++.+.  +..+.++
T Consensus        81 v~~lD~D~~~~~~~l~~l~~~~~--~~~v~~v  110 (235)
T cd06434          81 VVLLDSDTVWPPNALPEMLKPFE--DPKVGGV  110 (235)
T ss_pred             EEEECCCceeChhHHHHHHHhcc--CCCEeEE
Confidence            9999999766554 777777665  3344444

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	362
1lvw_A	295	Crystal Structure Of Glucose-1-phosphate Thymidylyl		5e-05
1h5t_A	293	Thymidylyltransferase Complexed With Thymidylyldiph		1e-04
1h5r_B	293	Thymidylyltransferase Complexed With Thimidine And		1e-04
3pkp_A	292	Q83s Variant Of S. Enterica Rmla With Datp Length =		1e-04
3pkq_A	292	Q83d Variant Of S. Enterica Rmla With Dgtp Length =		1e-04
1h5s_D	293	Thymidylyltransferase Complexed With Tmp Length = 2		1e-04
1h5s_A	293	Thymidylyltransferase Complexed With Tmp Length = 2		1e-04
1mp3_A	292	L89t Variant Of S. Enterica Rmla Length = 292		2e-04
1mp5_A	292	Y177f Variant Of S. Enterica Rmla Length = 292		2e-04
1mp4_A	292	W224h Variant Of S. Enterica Rmla Length = 292		3e-04
1iim_A	292	Thymidylyltransferase Complexed With Ttp Length = 2		3e-04

>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
          +VLAGG+  +L P +++ V K LLP+ ++P++ Y L  L L+ I+D++++    D  L
Sbjct: 7  IVLAGGSGTRLYP-ITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63

>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V K LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          ++LAGG+  +L P V+  V + LLP+ ++P++ Y L  L L+ I+D++++
Sbjct: 7  IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	1e-15
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	7e-15
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	3e-13
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	4e-13
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	2e-12
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	3e-09
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	2e-07
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	2e-07
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	3e-07
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	9e-07
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	9e-07
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	1e-06
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	1e-06
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	3e-06
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	4e-06
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	7e-06
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	1e-05
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	5e-05
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	6e-05
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	8e-05
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	9e-05
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	1e-04
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	1e-04
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	2e-04
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	4e-04

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           +  + ++LA G   +L PL ++  PKAL+ V  +P++ Y +E L+   I D+I++V    
Sbjct: 24  IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIV---- 78

Query: 61  AALRVGGWIS---AAYVDRLHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGDLVS 115
                 G++        ++  V +    +        +L  +   L     ++ + + + 
Sbjct: 79  ------GYLKEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA-NSYVIDADNYLF 131

Query: 116 D 116
            
Sbjct: 132 K 132

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196

 Score = 71.3 bits (175), Expect = 7e-15
 Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 13/134 (9%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVE-GADAA 62
             +++AGG   ++  +      K L+ +  R ++ YV+  L  S + ++ +         
Sbjct: 2   DALIMAGGKGTRMGGV-----EKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKT 56

Query: 63  LRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPG 120
                     Y + + ++        G    L     +  ++  LVVS D   +      
Sbjct: 57  KEYINSAYKDYKNIVVID----TSGKGYIEDLNECIGYF-SEPFLVVSSDLINLKSKIIN 111

Query: 121 AVTAAHRRHDAVVT 134
           ++        A   
Sbjct: 112 SIVDYFYCIKAKTP 125

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 33/174 (18%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + V+LA G   +L       VPK L+ V    ++   ++ L   ++ + I+V        
Sbjct: 20  KAVILAAGLGTRL-----GGVPKPLVRVGGCEIILRTMKLLS-PHVSEFIIVA------- 66

Query: 64  RVGGW----ISAAYVDR-LHVEVATVPE-DVGTAGALRAIAHHLTAKDVLVVSGDLVSDV 117
                    I A   D+  + ++      + G   +L    +H+     ++  GD V   
Sbjct: 67  ---SRYADDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVE-DRFILTMGDHVYSQ 122

Query: 118 PPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT-----KKPGRYNII 166
                     R + V+           + EA     +D       K    ++ +
Sbjct: 123 ---QFIEKAVRGEGVIA--DREPRFVDIGEATKIRVEDGRVAKIGKDLREFDCV 171

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 68.8 bits (169), Expect = 4e-13
 Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 23/138 (16%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           +  +LA G+ ++L P+     PKA +P+ ++P++ Y +E L    I+D+ V+V       
Sbjct: 2   KAFILAAGSGERLEPITHT-RPKAFVPILSKPLIEYQIEYLRKCGIRDITVIV------- 53

Query: 64  RVGGWISAAYVDRLHVEVATVPED---VGTAGALRAIAHHLTAK---DVLVVSGDLVSDV 117
                 +  Y ++   E++ V +     GT  A+ +      AK   + L++ GDL    
Sbjct: 54  ---SSKNKEYFEKKLKEISIVTQKDDIKGTGAAILS------AKFNDEALIIYGDLFFSN 104

Query: 118 PPGAVTAAHRRHDAVVTA 135
                     + +A++  
Sbjct: 105 EKEICNIITLKENAIIGV 122

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 21/137 (15%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M    +VLAGG  K+          KAL+P   RP++ +VLE L  + +   + V E   
Sbjct: 1   MRPSAIVLAGG--KEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGL-SPVYVGENPG 57

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVP 118
                                 T+P+  G    L     H+    VLV +GD   +++  
Sbjct: 58  LV---------------PAPALTLPDRGGLLENLEQALEHVEG-RVLVATGDIPHLTEEA 101

Query: 119 PGAVTAAHRRHDAVVTA 135
              V         V   
Sbjct: 102 VRFVLDKAPEAALVYPI 118

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Length = 197

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            VVLA G S +L        PK LLP  +  VL   L+    +    LI+ + G  A+  
Sbjct: 8   GVVLAAGRSNRL------GTPKQLLPYRDTTVLGATLDVARQAGFDQLILTL-GGAASAV 60

Query: 65  VGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHL--TAKDVLVVSGD--LVSDVPP 119
                  A +     +V  V + + G A +LR     +   A  ++++ GD   V+    
Sbjct: 61  ------RAAMALDGTDVVVVEDVERGCAASLRVALARVHPRATGIVLMLGDQPQVAPATL 114

Query: 120 GAVTAAHRRHDAVVTA 135
             +       + +V  
Sbjct: 115 RRIIDVGPATEIMVCR 130

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 22/145 (15%)

Query: 1   MDFQVVVLAGGT-----SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
            D  V+VLA G      S           PK L  +A R +LS+VL  +     + LIVV
Sbjct: 11  GDTAVLVLAAGPGTRMRSDT---------PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVV 61

Query: 56  V-EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK---DVLVVSG 111
           +         + G ++        ++VA     +GT  A+      L      +V+V SG
Sbjct: 62  LGHDHQRIAPLVGELADTLGRT--IDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSG 119

Query: 112 D--LVSDVPPGAVTAAHRRHDAVVT 134
           D  L+       + A HR   A VT
Sbjct: 120 DTPLLDADTLADLIATHRAVSAAVT 144

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 18/134 (13%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            VVLA G S++L        PK LLP+ +  +L   L          LIV + G  A   
Sbjct: 8   GVVLAAGYSRRL------GTPKQLLPLGDTTLLGATLAMARRCPFDQLIVTL-GGAADEV 60

Query: 65  VGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHL--TAKDVLVVSGD--LVSDVPP 119
                    V+   +++  V +  +G + +L++    +  TA+ ++++ GD   ++    
Sbjct: 61  ------LEKVELDGLDIVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAV 114

Query: 120 GAVTAAHRRHDAVV 133
            ++ A  R     V
Sbjct: 115 ASLIAGGRGATIAV 128

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 26/142 (18%)

Query: 1   MDFQVVVLAGGT-----SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
                V+LA G      S           PK L  +A +P++ +V++       +++ ++
Sbjct: 4   KALSAVILAAGKGTRMYSDL---------PKVLHTIAGKPMVKHVIDTAHQLGSENIHLI 54

Query: 56  V-EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD- 112
              G D            ++    V      E +GTA A++  A       +++V+ GD 
Sbjct: 55  YGHGGDLM--------RTHLANEQVNWVLQTEQLGTAHAVQQAAPFFKDNENIVVLYGDA 106

Query: 113 -LVSDVPPGAVTAAHRRHDAVV 133
            L++      +  A   +   +
Sbjct: 107 PLITKETLEKLIEAKPENGIAL 128

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 49.4 bits (119), Expect = 9e-07
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 28/140 (20%)

Query: 5   VVVLAGGT-----SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV-EG 58
            ++LA G      S           PK L  VA   +L +V   +     +  + VV   
Sbjct: 14  AIILAAGKGTRMKSDL---------PKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHK 64

Query: 59  ADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKD--VLVVSGD--LV 114
           A+        +      +   E  T  E +GT  A+      L       LV++GD  L+
Sbjct: 65  AEL-------VEEVLAGQ--TEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLI 115

Query: 115 SDVPPGAVTAAHRRHDAVVT 134
           +      +   H  H  V T
Sbjct: 116 TGESLKNLIDFHINHKNVAT 135

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236

 Score = 48.3 bits (116), Expect = 9e-07
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 33/155 (21%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
             +LAGGT  ++       +PK  L + +RP+L + +E+  L    + IVV    D    
Sbjct: 5   AGILAGGTGTRMGI---SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSH 61

Query: 65  VGGWISAAYVDRLHVEVATVPEDVG-------TAGALRAIAHHLTAKD---VLV------ 108
               +   Y+      +       G           + AI  +        V+       
Sbjct: 62  AEDLV-DKYLPLYKERIIITK---GGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRP 117

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            ++  ++ D     +  A + HDAV T     V  
Sbjct: 118 FITLRMIQDN----IQLA-QNHDAVDTV----VEA 143

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 26/142 (18%)

Query: 1   MDFQVVVLAGGT-----SKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
               VV+LA G      S           PK L P+A +P++ +V++       + + +V
Sbjct: 7   SSMSVVILAAGKGTRMYSDL---------PKVLHPLAGKPMVQHVIDAAMKLGAQHVHLV 57

Query: 56  V-EGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGD- 112
              G +             +    +      E +GT  A++  A H     D+L++ GD 
Sbjct: 58  YGHGGELL--------KKTLADPSLNWVLQAEQLGTGHAMQQAAPHFADDEDILMLYGDV 109

Query: 113 -LVSDVPPGAVTAAHRRHDAVV 133
            L+S      + AA       +
Sbjct: 110 PLISVDTLQRLLAAKPEGGIGL 131

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 37/155 (23%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M    VV A G+ ++L        PKA + +   P+L + L  L  S + D IV+     
Sbjct: 1   MATVAVVPAAGSGERL----RAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIA---- 52

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRA--IAHHLTAKD----VLV------ 108
                   +  A  D   +        + + G  R   +A  L A      VLV      
Sbjct: 53  --------VPPALTDESKLVFGGEDSVIVSGGVDRTESVALALEAAGDAEFVLVHDAARA 104

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
                L++ V    V A    H AVV      +  
Sbjct: 105 LTPPALIARV----VAALKEGHSAVVPG----LAP 131

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          +V+   G S +         PK +L    + +  + +            + +
Sbjct: 2  IVIPMAGMSSRFFKA-GYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFI 52

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 35/155 (22%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
             +LAGG   ++    +  +PK  LP+  +P++ + +E+  L+   D I++    +    
Sbjct: 6   AQILAGGKGTRMG---NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNH 62

Query: 65  VGGWISAAYVDRLHVEVA-------TVPEDVGTAGALRAIAHHLTAKD---VLV------ 108
               I     D   V +        T+         +R +       D   ++       
Sbjct: 63  AEDNIKKYISDDRIVVIEGGEDRNETI------MNGIRFVEKTYGLTDDDIIVTHDAVRP 116

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            ++  ++ +     + AA     AV T     +  
Sbjct: 117 FLTHRIIEEN----IDAA-LETGAVDTV----IEA 142

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 40/156 (25%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++ A G   +       + PK  + + ++ VL +VL   E     DL VVV   +    
Sbjct: 9   ALIPAAGIGVRF----GADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTF- 63

Query: 65  VGGWISAAYVDRLHVEVAT--------VPEDVGTAGALRAIAHHLTAKD---VLV----- 108
                                      V         +  +     A +   +LV     
Sbjct: 64  ---ADKVQTAFPQVRVWKNGGQTRAETV------RNGVAKLLETGLAAETDNILVHDAAR 114

Query: 109 --VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
             +  + ++ +    +  A    +  + A    VPV
Sbjct: 115 CCLPSEALARL----IEQAGNAAEGGILA----VPV 142

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 43/155 (27%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            +V A G+ ++L    +  VPKA   +  + ++   ++ L  S + D +VV         
Sbjct: 10  AIVPAAGSGERL----AVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVA-------- 57

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAG----------ALRAIAHHLTAKDVLV------ 108
               + A   D     +      V  AG          AL  ++     + VLV      
Sbjct: 58  ----VPADRTDEARQILGHRAMIV--AGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARA 111

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
                LV+ V    V A    + AVV      +P+
Sbjct: 112 LTPPALVARV----VEALRDGYAAVVPV----LPL 138

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 37/152 (24%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           V++LAGG  K++       +PK  +P+  +P+  Y             IVVV        
Sbjct: 7   VILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDI 62

Query: 65  VGGWISAAYVDRLHVEVATVPEDVG-------TAGALRAIAHHLTAKDVLV-------VS 110
                   Y + + V+++                  L+ I  +  ++ V +       V+
Sbjct: 63  F-----EEYEESIDVDLSFAI---PGKERQDSVYSGLQEIDVN--SELVCIHDSARPLVN 112

Query: 111 GDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            + V  V    +        A V      VP 
Sbjct: 113 TEDVEKV----LKDG-SAVGAAVLG----VPA 135

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 44/159 (27%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           +D   VV A G  +++      E PK  L + N+ +L + +  L        +V+     
Sbjct: 6   LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIA---- 57

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAG----------ALRAIAHHLTAKDVLV-- 108
                   IS        + +A  P+     G           L+A      A+ VLV  
Sbjct: 58  --------ISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAG---DAQWVLVHD 106

Query: 109 -----VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
                +  D ++ +    +  +       + A     PV
Sbjct: 107 AARPCLHQDDLARL----LALSETSRTGGILA----APV 137

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           +  +++LA G S +     + +V K  L + N P+  Y  + L        IVV     
Sbjct: 2  SEMSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNI 57

Query: 61 AALR 64
            ++
Sbjct: 58 TYMK 61

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Length = 201

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRV 65
           VVLAGG ++++       V K LL +  +P+  +V + L  + +  ++V         + 
Sbjct: 10  VVLAGGKARRM-----GGVDKGLLELNGKPLWQHVADALM-TQLSHVVVNANRHQEIYQA 63

Query: 66  GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAV--- 122
            G         L V   ++ +  G    + ++      +  L    D    +PP      
Sbjct: 64  SG---------LKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTP-YIPPDLAARL 113

Query: 123 TAAHRRHDAVV 133
               +    V 
Sbjct: 114 NHQRKDAPVVW 124

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Length = 236

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 35/154 (22%), Positives = 51/154 (33%), Gaps = 46/154 (29%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+  V++ A G   +L        PKA L V  R +L + L     +     ++V     
Sbjct: 24  MEVSVLIPAAGNGLRL-----GRGPKAFLQVGGRTLLEWTLAAFRDA---AEVLVA---- 71

Query: 61  AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRA--IAHHLTAKD---VLV------- 108
                   +         +    +    G  GA R   +A  L A     VLV       
Sbjct: 72  --------LPPGAEPPKGLGAVFLE---G--GATRQASVARLLEAASLPLVLVHDVARPF 118

Query: 109 VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
           VS  LV+      V  A +R  A V      +PV
Sbjct: 119 VSRGLVA-----RVLEAAQRSGAAVPV----LPV 143

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 43/155 (27%)

Query: 5   VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
            ++LA G  +++    S+ VPK  L +  R +  Y L     S   D +V+V        
Sbjct: 16  AILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIV-------- 63

Query: 65  VGGWISAAYVDRLHVEVATVPEDVGTAG----------ALRAIAHHLTAKDVLV------ 108
                   + + +   V          G          AL  +    +   VLV      
Sbjct: 64  ----TRREWFEVVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEKF-SPSYVLVHDSARP 118

Query: 109 -VSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPV 142
            +    VS+V    +  A R   A   A    +  
Sbjct: 119 FLRKKHVSEV----LRRA-RETGAATLA----LKN 144

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 22/140 (15%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M+  V++LA G  K+          K L  + N P++   +      +++ +I+V +  +
Sbjct: 1   MNIGVIILAAGEGKRF------GGDKLLAKIDNTPIIMRTIRI--YGDLEKIIIVGKYVN 52

Query: 61  AALRVGGWISAAYVDRLHVEVATVPE-DVGTAGALRAIAHHLTAKD-VLVVSGD--LVSD 116
             L +           +   V   P  + G + +L+         D VLV  GD   V+ 
Sbjct: 53  EMLPL----------LMDQIVIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTK 102

Query: 117 VPPGAVTAAHRRHDAVVTAM 136
                +    + +   V   
Sbjct: 103 EDVNKIINTFKPNCKAVIPT 122

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLI--------VV 55
           + V+LAGG   +L    +   PK ++ +  +P+L ++++   +  IKD I        V+
Sbjct: 4   KAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62

Query: 56  VE--------GADAALRVGG---WISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK 104
            E         +D    +      +    V+  +V +    +   T G L+ +A ++   
Sbjct: 63  KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD 122

Query: 105 DVLVVS-GDLVSDVPPGAVTAAHRRHDAVVTAMICSVP 141
           +  + + GD V+D+   A    H+ H    T      P
Sbjct: 123 EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPP 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	100.0
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	100.0
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.98
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.97
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	99.97
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.97
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	99.96
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	99.96
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	99.96
3pnn_A	303	Conserved domain protein; structural genomics, PSI	99.96
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.95
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.95
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.95
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.95
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.94
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	99.94
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.94
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.93
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.93
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.92
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.92
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.91
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.9
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.88
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.88
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.84
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.81
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.81
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.8
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	99.76
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	99.76
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.75
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	99.72
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.72
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	99.67
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	99.66
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	99.66
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	99.65
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	99.65
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	99.62
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	99.6
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	99.6
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	99.6
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	99.57
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	99.55
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	99.55
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	99.53
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	99.53
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.5
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.47
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	99.45
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	99.44
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	99.44
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	99.37
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	99.24
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	99.21
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	97.78
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	97.51
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	97.18
3ogz_A	630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	97.0
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	95.08
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	93.31
3bcv_A	240	Putative glycosyltransferase protein; protein stru	93.08
3cgx_A	242	Putative nucleotide-diphospho-sugar transferase; Y	90.03
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	89.92
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	86.8
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	85.18
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	81.41

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=100.00  E-value=1.6e-33  Score=275.94  Aligned_cols=257  Identities=19%  Similarity=0.302  Sum_probs=186.7

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCC----
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDR----   76 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~----   76 (362)
                      +|+|||||||.|+||+|| |..+||+|+|++|+ |||+|+|++|.++|+++|+|++++..  +.+.+++...+...    
T Consensus        20 ~~~avILAaG~gtRl~pl-T~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~--~~i~~~~~~~~~~~~~~~   96 (451)
T 1yp2_A           20 SVLGIILGGGAGTRLYPL-TKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS--ASLNRHLSRAYASNMGGY   96 (451)
T ss_dssp             HEEEEEC------CCTTT-TTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCC--HHHHHHHHHHCC------
T ss_pred             ceEEEEECCCCCCcccch-hcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCH--HHHHHHHhhhhhcccccc
Confidence            478999999999999999 99999999999999 99999999999999999999998753  47777776432101    


Q ss_pred             ---cceEEEEc--C-----CCCCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccC
Q 018019           77 ---LHVEVATV--P-----EDVGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVS  143 (362)
Q Consensus        77 ---~~i~i~~~--~-----~~~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~  143 (362)
                         ..+.++..  .     ...|++++++.+++++.   .++|+|++||++++.++.++++.|+++++++|+++.+....
T Consensus        97 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~  176 (451)
T 1yp2_A           97 KNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEK  176 (451)
T ss_dssp             --CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHH
T ss_pred             cccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChh
Confidence               12445431  1     14799999999988875   47799999999999999999999999899999987665310


Q ss_pred             CCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccc--cccccchHHHhhcCceee-ecCceeceEEeeCHHHH
Q 018019          144 GLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELE--KDTRIRKSILRAVGQMDI-RADLMDAHMYAFNRSVL  220 (362)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~e--k~~~i~~~~l~~~~~~~~-~~~l~~~giYi~s~~vl  220 (362)
                                     ++..|+++.+|+++++ ..+.++++.+  +.++++.+++.+++.... .++++++|+|+|++++|
T Consensus       177 ---------------~~~~~g~v~~d~~~~v-~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l  240 (451)
T 1yp2_A          177 ---------------RATAFGLMKIDEEGRI-IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVM  240 (451)
T ss_dssp             ---------------HHTTSEEEEECTTSBE-EEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHH
T ss_pred             ---------------hcccCCEEEECCCCCE-EEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHH
Confidence                           1457899999987765 5676544321  112233444433322111 34688999999999998


Q ss_pred             HHHHhcC-cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCce
Q 018019          221 QEVLDQK-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRT  299 (362)
Q Consensus       221 ~~~~~~~-~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (362)
                      ..++++. ....++.+|+|+.+++.+                                                      
T Consensus       241 ~~~l~~~~~~~~~~~~~~l~~~i~~g------------------------------------------------------  266 (451)
T 1yp2_A          241 LNLLRDKFPGANDFGSEVIPGATSLG------------------------------------------------------  266 (451)
T ss_dssp             HHHHHTTCTTCCCTTTTHHHHHHHTT------------------------------------------------------
T ss_pred             HHHHHhhcccccchHhhHHHHHHhcC------------------------------------------------------
Confidence            7676643 234566778888877531                                                      


Q ss_pred             eeEEEEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 018019          300 HKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (362)
Q Consensus       300 ~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~~~  333 (362)
                      .++++|..  +|||..|+|+.+|+++|++++...
T Consensus       267 ~~v~~~~~--~~~w~digt~~~l~~a~~~l~~~~  298 (451)
T 1yp2_A          267 MRVQAYLY--DGYWEDIGTIEAFYNANLGITKKP  298 (451)
T ss_dssp             CCEEEEEC--CSCCEECSSHHHHHHHHHGGGCSS
T ss_pred             CceEEEEe--CCEEEECCCHHHHHHHHHHHhccc
Confidence            35688877  789999999999999999999754

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=100.00  E-value=1e-32  Score=253.71  Aligned_cols=239  Identities=13%  Similarity=0.239  Sum_probs=183.4

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh-c-----
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY-V-----   74 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~-~-----   74 (362)
                      |.|+|||||||.|+||+|+ |..+||+|+||+|||||+|+++++.++|+++|+|++++.  .+.+.+++.+.+ .     
T Consensus         1 M~~~avIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~--~~~i~~~~~~~~~l~~~l~   77 (281)
T 3juk_A            1 MIKKCLFPAAGYGTRFLPI-TKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRN--KRSLEDYFDTSYEIEHQIQ   77 (281)
T ss_dssp             CCCEEEEECCSCCGGGTTG-GGTSCGGGCBSSSSBHHHHHHHHHHHHTCCEEEEEECTT--HHHHHHHTSCCC-------
T ss_pred             CceEEEEECCcCCcccCcc-ccCCCcccceECCEEHHHHHHHHHHhCCCCEEEEEecCC--HHHHHHHHhcchhhhhhhh
Confidence            8899999999999999999 999999999999999999999999999999999999865  357888775411 0     


Q ss_pred             ---------------CCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCC-----hHHHHHHHHhcCCeEE
Q 018019           75 ---------------DRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-----PGAVTAAHRRHDAVVT  134 (362)
Q Consensus        75 ---------------~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~-----l~~~l~~h~~~~a~~t  134 (362)
                                     ....+.++.++...||+++++.+++++.+++|+|++||.+++.+     +.++++.|++.++ .+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~  156 (281)
T 3juk_A           78 GTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SI  156 (281)
T ss_dssp             -CCHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CE
T ss_pred             cccchhhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcCCCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CE
Confidence                           01234455566789999999999998876789999999988888     9999999988877 56


Q ss_pred             EEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcC--CC--cEEEEeecCcccccccccchHHHhhcCceeeecCceec
Q 018019          135 AMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP--TK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDA  210 (362)
Q Consensus       135 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~--~~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~  210 (362)
                      +++...+..               .+..|+++.+|+  +|  + +..+.++++.+                ...++++++
T Consensus       157 v~~~~~~~~---------------~~~~~g~v~~~~~~~g~~~-v~~~~Ekp~~~----------------~~~~~~~~~  204 (281)
T 3juk_A          157 VAIEEVALE---------------EVSKYGVIRGEWLEEGVYE-IKDMVEKPNQE----------------DAPSNLAVI  204 (281)
T ss_dssp             EEEEECCTT---------------TGGGSEEEEEEEEETTEEE-EEEEEESCCTT----------------TCSCSEEEE
T ss_pred             EEEEEechh---------------hcccCCEEEeccCCCCceE-EeEEEECcCCC----------------CCCcceeEE
Confidence            666554311               256899999886  56  4 45666432211                123578899


Q ss_pred             eEEeeCHHHHHHHHhcCc---ccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCccccccc
Q 018019          211 HMYAFNRSVLQEVLDQKD---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYA  287 (362)
Q Consensus       211 giYi~s~~vl~~~~~~~~---~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (362)
                      |+|+|++++|..+.+...   +..++ .|+++.+++..                                          
T Consensus       205 GiYi~~~~~l~~l~~~~~~~~~e~~l-~d~i~~l~~~~------------------------------------------  241 (281)
T 3juk_A          205 GRYILTPDIFEILSETKPGKNNEIQI-TDALRTQAKRK------------------------------------------  241 (281)
T ss_dssp             EEEEECTTHHHHHHTCCCCGGGSCCH-HHHHHHHHHHS------------------------------------------
T ss_pred             EEEEECHHHHHHHHhcCCCCCCceeH-HHHHHHHHhcC------------------------------------------
Confidence            999999999965533211   11223 56777766431                                          


Q ss_pred             CCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 018019          288 LGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (362)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~~~  333 (362)
                                   ++++|.+  +||+..|+|+.+|+++|+.+++..
T Consensus       242 -------------~v~~~~~--~g~~~dIgt~~d~~~a~~~l~~~~  272 (281)
T 3juk_A          242 -------------RIIAYQF--KGKRYDCGSVEGYIEASNAYYKKR  272 (281)
T ss_dssp             -------------CCEEEEC--CSEEEETTSHHHHHHHHHHHHHHH
T ss_pred             -------------CEEEEEe--CCeEEcCCCHHHHHHHHHHHHhch
Confidence                         3478887  789999999999999999999853

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.98  E-value=2.5e-31  Score=258.12  Aligned_cols=247  Identities=17%  Similarity=0.243  Sum_probs=180.6

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhc-C----
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-D----   75 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~----   75 (362)
                      +|+|||||||.|+||+|| |..+||+|+|++|+ |||+|+|++|.++|+++|+|++++..  +.+.+++.+.+. .    
T Consensus        12 ~~~avILAaG~gtRl~pl-T~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~~~~~~~~~~~~~   88 (420)
T 3brk_X           12 DAMAYVLAGGRGSRLKEL-TDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKA--HSLIRHLQRGWDFFRPER   88 (420)
T ss_dssp             GEEEEEEECCCCGGGGGG-GSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTC--HHHHHHHHHHSCCCCGGG
T ss_pred             ceEEEEEcCCCCCccchh-hcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCCh--HHHHHHHhhhhccccccc
Confidence            478999999999999999 99999999999999 99999999999999999999998653  478888875221 1    


Q ss_pred             CcceEEEEcC----CC---CCHHHHHHHHHHhcC---CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCC
Q 018019           76 RLHVEVATVP----ED---VGTAGALRAIAHHLT---AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGL  145 (362)
Q Consensus        76 ~~~i~i~~~~----~~---~gt~~al~~~~~~i~---~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~  145 (362)
                      ..++.++...    ++   .|++++++.+++++.   .++|++++||.+++.++.++++.|+++++++|+++.+.+..  
T Consensus        89 ~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~--  166 (420)
T 3brk_X           89 NESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRM--  166 (420)
T ss_dssp             TCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETT--
T ss_pred             cCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCcc--
Confidence            1134444321    23   799999999988774   36799999999899999999999999899999888765321  


Q ss_pred             cccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          146 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                                   ++..|+++.+|+++++ ..+.+++......    .       ....+++.++|+|+|++++|..+++
T Consensus       167 -------------~~~~~g~v~~d~~g~v-~~~~ekp~~~~~~----~-------~~~~~~~~~~Giy~~~~~~l~~~l~  221 (420)
T 3brk_X          167 -------------EATGFGVMHVNEKDEI-IDFIEKPADPPGI----P-------GNEGFALASMGIYVFHTKFLMEAVR  221 (420)
T ss_dssp             -------------GGGGSEEEEECTTSBE-EEEEESCSSCCCB----T-------TBTTEEEEEEEEEEEEHHHHHHHHT
T ss_pred             -------------ccCcccEEEECCCCcE-EEeEeCCCccccc----c-------ccccceEEeeeeEEEeHHHHHHHHH
Confidence                         1457899999987765 5666432111100    0       0112478999999999999876665


Q ss_pred             cCc----ccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceee
Q 018019          226 QKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  301 (362)
Q Consensus       226 ~~~----~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (362)
                      +..    ...++..|+++.+++++                                                       +
T Consensus       222 ~~~~~~~~~~~~~~d~l~~li~~g-------------------------------------------------------~  246 (420)
T 3brk_X          222 RDAADPTSSRDFGKDIIPYIVEHG-------------------------------------------------------K  246 (420)
T ss_dssp             SSCCC----------CTTHHHHHS-------------------------------------------------------C
T ss_pred             HhcccCCccccchHHHHHHHhhhC-------------------------------------------------------c
Confidence            421    12345568888877542                                                       3


Q ss_pred             EEEEEec---------CCceEEEeCCHHHHHHHhHHHhhhh
Q 018019          302 CCVYIAS---------NSKYCVRLNSIQAFMDINRDVIGEA  333 (362)
Q Consensus       302 ~~~~~~~---------~~~y~~rin~~~~Y~~~n~~~l~~~  333 (362)
                      +++|.++         .+|||..|+|+.+|+++|+++++.+
T Consensus       247 v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~  287 (420)
T 3brk_X          247 AVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVV  287 (420)
T ss_dssp             EEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSS
T ss_pred             EEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCC
Confidence            4666652         2579999999999999999999753

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.97  E-value=8.3e-30  Score=232.90  Aligned_cols=234  Identities=16%  Similarity=0.250  Sum_probs=178.2

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      .|+|||||||.|+||+|+ |..+||+|+||+|+|||+|+++++.++|+++|+|++++.+. +.+.+++.+...-...+.+
T Consensus        24 ~m~aiIlAaG~g~Rl~~l-t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~iivv~~~~~~-~~~~~~~~~~~~~~~~i~~  101 (269)
T 4ecm_A           24 AMKGIILAGGTGSRLYPI-TKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHM-GDVVSFLGSGQEFGVSFTY  101 (269)
T ss_dssp             CEEEEEECCSCCGGGTTT-TSSSCGGGSEETTEEHHHHHHHHHHHTTCCEEEEEECTTTH-HHHHHHHTTSGGGTCEEEE
T ss_pred             CcEEEEECCCCccccccc-cCCCCceecEECCEEHHHHHHHHHHHCCCCEEEEECChhhH-HHHHHHHhhccccCceEEE
Confidence            479999999999999999 99999999999999999999999999999999999986432 4666777531100123445


Q ss_pred             EEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCC
Q 018019           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (362)
                      +.++...|++++++.+++++..++++|++||.++..++.++++.|+++++++++++.+..                 ++.
T Consensus       102 ~~~~~~~G~~~al~~a~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-----------------~~~  164 (269)
T 4ecm_A          102 RVQDKAGGIAQALGLCEDFVGNDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVD-----------------DPE  164 (269)
T ss_dssp             EECSSCCCHHHHHHTTHHHHTTSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECS-----------------CGG
T ss_pred             eeCCccCcHHHHHHHHHHhcCCCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECC-----------------CCC
Confidence            555667999999999998887678999999998889999999999988899988887543                 255


Q ss_pred             cceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcc--cccc-hhhhh
Q 018019          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDK--FQSL-KQDVL  238 (362)
Q Consensus       162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~--~~s~-~~d~i  238 (362)
                      .|+++..|+ ++ +..+.+     |+.             ...+.++++|+|+|++++|..+ ++...  -..+ ..|++
T Consensus       165 ~~g~v~~d~-g~-v~~~~e-----kp~-------------~~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~ge~~l~d~l  223 (269)
T 4ecm_A          165 RFGVANIQN-RK-IIEIEE-----KPK-------------EPKSSYAVTGIYLYDSKVFSYI-KELKPSARGELEITDIN  223 (269)
T ss_dssp             GSEEEEEET-TE-EEEEEE-----SCS-------------SCSCSEEEEEEEEECTTHHHHH-TSCCBCTTSCBCHHHHH
T ss_pred             CceEEEEcC-CE-EEEEEE-----CCC-------------CCCCcEEEEEEEEECHHHHHhh-hhcCCCCCCeeeHHHHH
Confidence            789998885 55 456653     321             1235789999999999999544 42211  0111 24555


Q ss_pred             hHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCC
Q 018019          239 PYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNS  318 (362)
Q Consensus       239 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~  318 (362)
                      +.++...                                                       ++++|..  +||+..|+|
T Consensus       224 ~~l~~~g-------------------------------------------------------~v~~~~~--~~~~~dIgt  246 (269)
T 4ecm_A          224 NWYLKRG-------------------------------------------------------VLTYNEM--SGWWTDAGT  246 (269)
T ss_dssp             HHHHHTT-------------------------------------------------------CEEEEEC--CSCEEECSS
T ss_pred             HHHHHcC-------------------------------------------------------CEEEEEe--CCEEEeCCC
Confidence            5554321                                                       3466766  789999999


Q ss_pred             HHHHHHHhHHHhhh
Q 018019          319 IQAFMDINRDVIGE  332 (362)
Q Consensus       319 ~~~Y~~~n~~~l~~  332 (362)
                      +.+|.++|+.+++.
T Consensus       247 ~~dl~~a~~~l~~~  260 (269)
T 4ecm_A          247 HVSLQRANALARDI  260 (269)
T ss_dssp             HHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998764

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=99.97  E-value=1.6e-29  Score=229.36  Aligned_cols=229  Identities=18%  Similarity=0.308  Sum_probs=167.6

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhc--CCcc
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV--DRLH   78 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~--~~~~   78 (362)
                      |+|+|||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++|+|++++..  +.+.+++.+...  ....
T Consensus         1 m~~~avIlAaG~gtRl~~l-t~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~--~~i~~~~~~~~~~~~~~~   77 (259)
T 1tzf_A            1 MASKAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKG--YVIKEYFANYFLHMSDVT   77 (259)
T ss_dssp             CCCEEEEEECSCC---------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTH--HHHHHHHHTHHHHHSCEE
T ss_pred             CCcEEEEECCCCcccCCCc-cCCCCccccEECCEEHHHHHHHHHHHCCCCEEEEEcccCH--HHHHHHHhhccccccccc
Confidence            8999999999999999999 9999999999999999999999999999999999998653  578888765310  0111


Q ss_pred             -------------------eEEEEcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEe
Q 018019           79 -------------------VEVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMIC  138 (362)
Q Consensus        79 -------------------i~i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~  138 (362)
                                         +.+..++...||+++++.+++++. .+++++++||.+++.++.++++.|.+.++++|+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~  157 (259)
T 1tzf_A           78 FHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT  157 (259)
T ss_dssp             EEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred             ccccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcCCCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEe
Confidence                               112223446899999999988883 567999999999999999999999888888877543


Q ss_pred             eeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHH
Q 018019          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS  218 (362)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~  218 (362)
                      .                   .+..|+++.+| +|+ +..+.+     |+.              ....++++|+|+|+++
T Consensus       158 ~-------------------~~~~~g~v~~~-~g~-v~~~~e-----kp~--------------~~~~~~~~Giy~~~~~  197 (259)
T 1tzf_A          158 F-------------------PPGRFGALDIQ-AGQ-VRSFQE-----KPK--------------GDGAMINGGFFVLNPS  197 (259)
T ss_dssp             C-------------------CCCCSEEEEEE-TTE-EEEEEE-----SCS--------------CCSCCEECCCEEECGG
T ss_pred             c-------------------CCCCccEEEEc-CCE-EEEEEe-----cCC--------------CCCceEEEEEEEeCHH
Confidence            2                   14568888888 565 456653     331              1136889999999999


Q ss_pred             HHHHHHhcCcccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCc
Q 018019          219 VLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR  298 (362)
Q Consensus       219 vl~~~~~~~~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (362)
                      +|..+ +..  ..++..|+++.+++++                                                     
T Consensus       198 ~l~~l-~~~--~~~~~~~~i~~~~~~~-----------------------------------------------------  221 (259)
T 1tzf_A          198 VIDLI-DND--ATTWEQEPLMTLAQQG-----------------------------------------------------  221 (259)
T ss_dssp             GGGGC-CST--TCCTTTHHHHHHHHTT-----------------------------------------------------
T ss_pred             HHHhh-ccc--ccccHHHHHHHHHHcC-----------------------------------------------------
Confidence            98533 321  1234467777765321                                                     


Q ss_pred             eeeEEEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 018019          299 THKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (362)
Q Consensus       299 ~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~~  332 (362)
                        ++++|..  +||+..|+|+.+|.++++.++..
T Consensus       222 --~v~~~~~--~~~~~dI~t~~d~~~a~~~~~~~  251 (259)
T 1tzf_A          222 --ELMAFEH--PGFWQPMDTLRDKVYLEGLWEKG  251 (259)
T ss_dssp             --CEEEEEE--CSCEEECCSHHHHHHHHHHHHTT
T ss_pred             --CEEEEEe--CcEEEeCCCHHHHHHHHHHHhcC
Confidence              3577877  67999999999999999998763

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.97  E-value=2e-29  Score=250.02  Aligned_cols=187  Identities=25%  Similarity=0.300  Sum_probs=151.9

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhc-CCcceEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV-DRLHVEV   81 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~-~~~~i~i   81 (362)
                      +.+||||||+||||+|+ |   ||||+||+|||||+|+|++|.++|+++|+|++++.  .+++.+++.++.. -...+.+
T Consensus        13 ~~vvILAaG~GtRm~~~-~---pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~~--~~~i~~~~~~~~~~~~~~i~~   86 (501)
T 3st8_A           13 TAVLVLAAGPGTRMRSD-T---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHD--HQRIAPLVGELADTLGRTIDV   86 (501)
T ss_dssp             EEEEEEECSCCGGGCCS-S---CGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECTT--HHHHHHHHHHHHHHHTSCCEE
T ss_pred             ceEEEECCcCcccCCCC-C---CHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCCC--HHHHHHHHHHHHHhcCCcEEE
Confidence            46799999999999998 5   99999999999999999999999999999999976  4688888875211 1246788


Q ss_pred             EEcCCCCCHHHHHHHHHHhcCC---CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019           82 ATVPEDVGTAGALRAIAHHLTA---KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~---~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (362)
                      +.|++++|||+|++++++++.+   ++++++.||.  +...++..+++.|+..++++|+++.+.+               
T Consensus        87 ~~q~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~---------------  151 (501)
T 3st8_A           87 ALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLD---------------  151 (501)
T ss_dssp             EECSSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS---------------
T ss_pred             EEcCCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccC---------------
Confidence            8899999999999999998863   4689999994  4456789999999999999999988754               


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcC
Q 018019          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK  227 (362)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~  227 (362)
                        +|..||++..|++|++ ..+.++.+..     +.         +...+++++|+|+|++++|..++...
T Consensus       152 --dp~~yG~i~~~~~g~v-~~ivEk~~~~-----~~---------~~~i~~in~Giy~f~~~~l~~~l~~l  205 (501)
T 3st8_A          152 --DPFGYGRILRTQDHEV-MAIVEQTDAT-----PS---------QREIREVNAGVYAFDIAALRSALSRL  205 (501)
T ss_dssp             --CCTTSCEEEECTTCCE-EEEECGGGCC-----HH---------HHHCCEEEEEEEEEEHHHHHHHHTTC
T ss_pred             --CchhccccccccceeE-EeeccccCCC-----hh---------hccceeeeceeeeecchhHHHhhhhh
Confidence              3778999999999976 5666422110     10         12357899999999999998887643

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=99.96  E-value=3e-28  Score=226.21  Aligned_cols=234  Identities=12%  Similarity=0.225  Sum_probs=171.9

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh---------
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY---------   73 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~---------   73 (362)
                      |+|||||||.|+||+|+ |..+||+|+||+|+|||+|+++++.++|+++|+|++++.  .+.+.+++...+         
T Consensus         9 ~~avIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~--~~~i~~~~~~~~~l~~~l~~~   85 (302)
T 2e3d_A            9 KKAVIPVAGLGTRMLPA-TKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSS--KNSIENHFDTSFELEAMLEKR   85 (302)
T ss_dssp             CEEEEECCSCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG--GHHHHHHHSCCHHHHHHHC--
T ss_pred             cEEEEECCcCcccCCcc-ccCCCceeeEECCeEHHHHHHHHHHHCCCCEEEEEeCCC--HHHHHHHHhcchhhhhhhhhc
Confidence            78999999999999999 999999999999999999999999999999999999865  357888775311         


Q ss_pred             -------------cCCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccC-----C---ChHHHHHHHHhcCCe
Q 018019           74 -------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD-----V---PPGAVTAAHRRHDAV  132 (362)
Q Consensus        74 -------------~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~-----~---~l~~~l~~h~~~~a~  132 (362)
                                   .....+.++.++...|++++++.+++++.+++|+|++||.+++     .   ++..+++.|++.++ 
T Consensus        86 ~~~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-  164 (302)
T 2e3d_A           86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-  164 (302)
T ss_dssp             --CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-
T ss_pred             cchhhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcCCCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-
Confidence                         0112344556667899999999999888667899999997666     3   79999999988777 


Q ss_pred             EEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEc----CCCc--EEEEeecCcccccccccchHHHhhcCceeeecC
Q 018019          133 VTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTKQ--FLLHIATGAELEKDTRIRKSILRAVGQMDIRAD  206 (362)
Q Consensus       133 ~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~~--~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~  206 (362)
                      +|+++....                 .+..|+++..+    ++|.  .+..+.+++..+                ...+.
T Consensus       165 ~~i~~~~~~-----------------~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~----------------~~~~~  211 (302)
T 2e3d_A          165 SQIMVEPVA-----------------DVTAYGVVDCKGVELAPGESVPMVGVVEKPKAD----------------VAPSN  211 (302)
T ss_dssp             EEEEEEECS-----------------CGGGSEEEECTTCCCCTTCEEEECEEEESCCTT----------------TCSCS
T ss_pred             cEEEEEEcc-----------------CCCCccEEEecccccCCCCceeEEEEEECCCCC----------------ccccc
Confidence            666655431                 24578988764    3441  345555322110                12347


Q ss_pred             ceeceEEeeCHHHHHHHHhcCc-cc-ccc-hhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCccc
Q 018019          207 LMDAHMYAFNRSVLQEVLDQKD-KF-QSL-KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH  283 (362)
Q Consensus       207 l~~~giYi~s~~vl~~~~~~~~-~~-~s~-~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (362)
                      ++++|+|+|++++|..+ +... +. ..+ ..|+++.+++.                                       
T Consensus       212 ~~~~Giyi~~~~~l~~l-~~~~~~~~~~~~l~d~i~~l~~~---------------------------------------  251 (302)
T 2e3d_A          212 LAIVGRYVLSADIWPLL-AKTPPGAGDEIQLTDAIDMLIEK---------------------------------------  251 (302)
T ss_dssp             EEEEEEEEECTTHHHHH-TCCCC----CCCHHHHHHHHHHH---------------------------------------
T ss_pred             eEEEEEEEECHHHHHHH-HhhCCCCCCceehHHHHHHHHHh---------------------------------------
Confidence            88999999999988655 3321 10 011 13555554422                                       


Q ss_pred             ccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 018019          284 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~  331 (362)
                                      -++++|.+  +||+..|+|+.+|+++|++++-
T Consensus       252 ----------------~~v~~~~~--~~~~~DIgt~~d~~~a~~~~~~  281 (302)
T 2e3d_A          252 ----------------ETVEAYHM--KGKSHDCGNKLGYMQAFVEYGI  281 (302)
T ss_dssp             ----------------SCEEEEEC--CSCEEECSSHHHHHHHHHHHHH
T ss_pred             ----------------CCEEEEEe--CCeEEcCCCHHHHHHHHHHHHh
Confidence                            14577877  6799999999999999988774

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=99.96  E-value=8.5e-29  Score=229.40  Aligned_cols=239  Identities=16%  Similarity=0.178  Sum_probs=160.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh--------
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------   73 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~--------   73 (362)
                      .|+|||||||.|+||+|+ |..+||+|+||+|+|||+|+++++.++|+++|+|++++..  +.+.+++...+        
T Consensus        14 ~~~avIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~--~~i~~~~~~~~~l~~~l~~   90 (297)
T 2ux8_A           14 LRKAVFPVAGLGTRFLPA-TKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGK--SALEDHFDIAYELEATMAA   90 (297)
T ss_dssp             CCEEEEEECCCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTC--HHHHHHTSCCHHHHHHHHT
T ss_pred             ccEEEEECCCCccccCcc-ccCCCceeeeECCeEHHHHHHHHHHhCCCCEEEEEeCCCH--HHHHHHHhhhhhhhhhhhh
Confidence            578999999999999999 9999999999999999999999999999999999998653  47777765311        


Q ss_pred             ------------cCCcceEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcccC---CChHHHHHHHHhcCCeEEEEEe
Q 018019           74 ------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSD---VPPGAVTAAHRRHDAVVTAMIC  138 (362)
Q Consensus        74 ------------~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~---~~l~~~l~~h~~~~a~~t~l~~  138 (362)
                                  .....+.++.++...|++++++.+++++..++|+|++||.+++   .++..+++.|++.++ .++.+.
T Consensus        91 ~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~  169 (297)
T 2ux8_A           91 RGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAE  169 (297)
T ss_dssp             TTCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHCSSCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC
T ss_pred             ccchhhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcCCCcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEE
Confidence                        0113466666667799999999999888667899999997665   679999999988776 555554


Q ss_pred             eeccCCCcccCCCCCccCCCCCCcceEEEEcC--CC-cEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEee
Q 018019          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP--TK-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF  215 (362)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~--~~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~  215 (362)
                      ..+..               .+..|+++..++  ++ ..+..+.+     |+.. .          ...++++++|+|+|
T Consensus       170 ~~~~~---------------~~~~yg~v~~~~~~~~~~~v~~~~e-----kp~~-~----------~~~~~~~~~Giyi~  218 (297)
T 2ux8_A          170 EVPDD---------------QTHRYGIITPGTQDGVLTEVKGLVE-----KPAP-G----------TAPSNLSVIGRYIL  218 (297)
T ss_dssp             --------------------------CCCCCCBCSSEEEC------------------------------CCCEEEEEEE
T ss_pred             ecCcc---------------cCCCCCeEEecccCCCceeEEEEEE-----CCCC-C----------CCCccEEEEEEEEE
Confidence            43211               245677776653  33 13344542     3210 0          12347899999999


Q ss_pred             CHHHHHHHHhcCcccc-cc-hhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCC
Q 018019          216 NRSVLQEVLDQKDKFQ-SL-KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGS  293 (362)
Q Consensus       216 s~~vl~~~~~~~~~~~-s~-~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (362)
                      ++++|..+.+...+.. .+ -.|+++.+++                                                  
T Consensus       219 ~~~~l~~l~~~~~~~~~~~~l~d~i~~l~~--------------------------------------------------  248 (297)
T 2ux8_A          219 QPEVMRILENQGKGAGGEIQLTDAMQRMIG--------------------------------------------------  248 (297)
T ss_dssp             CTHHHHHHHHTC--------CCTTGGGGTT--------------------------------------------------
T ss_pred             CHHHHHHHHhhCCCCCCeeEHHHHHHHHHh--------------------------------------------------
Confidence            9998865532111100 00 0122222210                                                  


Q ss_pred             CCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHHhhh
Q 018019          294 APVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  332 (362)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~~  332 (362)
                           .-++++|.+  +|+|..|+|+.+|.++|++++..
T Consensus       249 -----~~~v~~~~~--~~~w~dIgt~~dl~~a~~~~~~~  280 (297)
T 2ux8_A          249 -----DQPFHGVTF--QGTRYDCGDKAGFIQANLAVALS  280 (297)
T ss_dssp             -----TSCEEEEEC--SSEEEETTSHHHHHHHHHHHHHH
T ss_pred             -----cCCEEEEEe--cceEEeCCCHHHHHHHHHHHHhc
Confidence                 015688887  67999999999999999988753

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.96  E-value=3.7e-28  Score=227.66  Aligned_cols=239  Identities=17%  Similarity=0.205  Sum_probs=173.0

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhh--------
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAY--------   73 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~--------   73 (362)
                      -|+|||||||.|+||+|+ |..+||+|+||+|+|||+|+++++..+|+++|+|++++..  +.+.+++...+        
T Consensus        12 ~~~aVIlAaG~gtRl~pl-t~~~pK~ll~i~gkpli~~~l~~l~~~gi~~iivv~~~~~--~~i~~~~~~~~~~~~~l~~   88 (323)
T 2pa4_A           12 VKTVVVPAAGLGTRFLPA-TKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNK--AGVLAHFERSSELEETLME   88 (323)
T ss_dssp             CCEEEEECCCCCGGGTTG-GGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTC--HHHHHTTSCCHHHHHHHHH
T ss_pred             ceEEEEECCCCccccCcc-ccCCCceeeeECCEEHHHHHHHHHHhCCCCEEEEEecCcH--HHHHHHHhccchhhhhhhc
Confidence            378999999999999999 9999999999999999999999999999999999998653  46766654210        


Q ss_pred             -------------cCCcceEEEEcCCCCCHHHHHHHHHHhcCCCc--EEEEeCCcccC--CChHHHHHHHHhcCCeEEEE
Q 018019           74 -------------VDRLHVEVATVPEDVGTAGALRAIAHHLTAKD--VLVVSGDLVSD--VPPGAVTAAHRRHDAVVTAM  136 (362)
Q Consensus        74 -------------~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~~--~lv~~~D~i~~--~~l~~~l~~h~~~~a~~t~l  136 (362)
                                   .....+.++.++...|++++++.+++++..++  |+|++||.+++  .++..+++.|++.++ .++.
T Consensus        89 ~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~  167 (323)
T 2pa4_A           89 RGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLC  167 (323)
T ss_dssp             TTCHHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEE
T ss_pred             cchhhhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEE
Confidence                         00123455666667999999999988886555  99999997665  679999999987766 4555


Q ss_pred             EeeeccCCCcccCCCCCccCCCCCCcceEEEEc----CCC-cEEEEeecCcccccccccchHHHhhcCceeeecCceece
Q 018019          137 ICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD----PTK-QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH  211 (362)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d----~~~-~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~g  211 (362)
                      +...+..               .+..|+++.++    +++ ..+..+.+++..+                ...+++.++|
T Consensus       168 ~~~~~~~---------------~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~----------------~~~~~~~~~G  216 (323)
T 2pa4_A          168 AVEVSEA---------------DVSKYGIFEIEADTKDSDVKKVKGMVEKPAIE----------------DAPSRLAATG  216 (323)
T ss_dssp             EEECCGG---------------GGGGSEEEEEEECCSSTTEEEEEEEEESCCTT----------------TCSCSEEEEE
T ss_pred             EEEeccc---------------ccCCccEEEeCCcccCCCceeEEEEEECCCCc----------------cccccEEEEE
Confidence            5443210               14578988876    443 2455666432111                1234788999


Q ss_pred             EEeeCHHHHHHHHhcCccc-ccch-hhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCC
Q 018019          212 MYAFNRSVLQEVLDQKDKF-QSLK-QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALG  289 (362)
Q Consensus       212 iYi~s~~vl~~~~~~~~~~-~s~~-~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (362)
                      +|+|++++|..+.....+. ..+. .++++.+++++                                            
T Consensus       217 iY~~~~~~~~~l~~~~~~~~ge~~l~d~i~~l~~~g--------------------------------------------  252 (323)
T 2pa4_A          217 RYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEG--------------------------------------------  252 (323)
T ss_dssp             EEEEETHHHHHHHHCCCCGGGCCCHHHHHHHHHHTT--------------------------------------------
T ss_pred             EEEECHHHHHHHHhhCCCCCCeEeHHHHHHHHHHcC--------------------------------------------
Confidence            9999999886653322111 1111 46666654321                                            


Q ss_pred             CCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 018019          290 PNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~  331 (362)
                                .++++|.+  +|++..|+|+.+|.++|++++.
T Consensus       253 ----------~~v~~~~~--~g~w~DIgt~~dl~~a~~~~~~  282 (323)
T 2pa4_A          253 ----------HPVHIVIH--QGKRHDLGNPGGYIPACVDFGL  282 (323)
T ss_dssp             ----------CCEEEEEC--CSEEEECSSHHHHHHHHHHHHH
T ss_pred             ----------CCEEEEEe--CCeEEeCCCHHHHHHHHHHHhh
Confidence                      35678887  6799999999999999998874

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=99.96  E-value=8.9e-28  Score=223.05  Aligned_cols=253  Identities=14%  Similarity=0.114  Sum_probs=177.5

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeee--CCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcc
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPV--ANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv--~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~   78 (362)
                      |++.+||||||.|+||+|      ||+|+|+  +|+|||+|+++++.++|+++|+|++++.. .+.+.+++.+......+
T Consensus         4 m~~~~vIlAaG~g~R~~~------~K~l~~ig~~g~pli~~~l~~~~~~~~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~   76 (303)
T 3pnn_A            4 MKPTLFVLAAGMGSRYGS------LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSF-EKEFREKILTKYEGRIP   76 (303)
T ss_dssp             CCCEEEEECTTCBCTTSS------BCCCCCCSTTSCCHHHHHHHHHHHHTCCEEEEEECGGG-HHHHHHHTHHHHTTTSC
T ss_pred             CceEEEEECCCCcccCCC------CceEeEcCCCCeeHHHHHHHHHHHCCCCeEEEEcCchH-HHHHHHHHHHHhccCCc
Confidence            688999999999999965      5999999  59999999999999999999999998653 25788888754322345


Q ss_pred             eEEEEcC---------------CCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCC-hHHHHHHHHh---cCCeEEEEEee
Q 018019           79 VEVATVP---------------EDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRR---HDAVVTAMICS  139 (362)
Q Consensus        79 i~i~~~~---------------~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~---~~a~~t~l~~~  139 (362)
                      +.++.++               .+.||+++++.+++++ +++|+|++||.+++.+ +..+++.|.+   .++++|+++..
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i-~~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~  155 (303)
T 3pnn_A           77 VELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI-REPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYR  155 (303)
T ss_dssp             EEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC-CSCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEE
T ss_pred             EEEEecccccccccccccccccccCCcHHHHHHHHHhc-CCCEEEEECCeecCHHHHHHHHHHHHHhccccCceEEEEEE
Confidence            6677665               5699999999999988 6789999999988775 8999999976   57889988876


Q ss_pred             eccCCC-cccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccc---cccchHHHhhcCc-e-eeecCceeceEE
Q 018019          140 VPVSGL-SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKD---TRIRKSILRAVGQ-M-DIRADLMDAHMY  213 (362)
Q Consensus       140 ~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~---~~i~~~~l~~~~~-~-~~~~~l~~~giY  213 (362)
                      ..  +| ..++          ...+|++.+|++|++ ..+.++++....   .....    ..+. . ...++++++|+|
T Consensus       156 ~~--~~~~~~g----------~~~~G~v~~d~~g~v-~~i~Ekp~~~~~~~~~~~~~----~~g~~~~~~~~~~i~~GiY  218 (303)
T 3pnn_A          156 VG--NTLSESG----------GVSRGVCQVDEKHLL-TGVVERTGIERTDGTISFRD----ETGKICTLAEDAPVSMNMW  218 (303)
T ss_dssp             GG--GSCBTTB----------CEEEEEEEECTTSBE-EEEEEEEEEEEETTEEEEEC----TTSCEEEECTTCEEEEEEE
T ss_pred             CC--CccCccC----------ceeeeeEeeCCCCcE-EEEEECCCCccccccccccc----cccccccCCCCCEEEEEEE
Confidence            53  22 1110          123478889988865 577643321100   00000    0000 0 013579999999


Q ss_pred             eeCHHHHHHHHh--------cCcc--cccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCccc
Q 018019          214 AFNRSVLQEVLD--------QKDK--FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH  283 (362)
Q Consensus       214 i~s~~vl~~~~~--------~~~~--~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (362)
                      +|++++|..+.+        ....  -.....|+|+.+++.+                                      
T Consensus       219 ~f~~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g--------------------------------------  260 (303)
T 3pnn_A          219 GFTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSG--------------------------------------  260 (303)
T ss_dssp             EECTHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHT--------------------------------------
T ss_pred             EECHHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcC--------------------------------------
Confidence            999999976632        1110  0011234444444321                                      


Q ss_pred             ccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 018019          284 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (362)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~~~  333 (362)
                                     ..++++|.+  +||+..|+|...|.++++.+-..+
T Consensus       261 ---------------~~~v~~~~~--~g~w~dIgt~~dl~~a~~~l~~~~  293 (303)
T 3pnn_A          261 ---------------RASVEVLDT--TARWFGVTYSDDRPGVVAKLRELT  293 (303)
T ss_dssp             ---------------SCEEEEEEC--SCCCBCCSSGGGHHHHHHHHHHHH
T ss_pred             ---------------CCcEEEEEe--CCceECCCCHHHHHHHHHHHHHHH
Confidence                           126788888  789999999999999998876643

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.95  E-value=6.9e-27  Score=215.95  Aligned_cols=185  Identities=20%  Similarity=0.333  Sum_probs=143.5

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |+|+|||||||.||||+|+ |..+||+|+||+|||||+|+++.|..+|+++|+|++...+ .+.+.+++.+...-...+.
T Consensus         1 M~~~aIILAgG~gtRl~pl-T~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~-~~~i~~~l~~g~~~g~~i~   78 (293)
T 1fxo_A            1 MKRKGIILAGGSGTRLHPA-TLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQD-TPRFQQLLGDGSNWGLDLQ   78 (293)
T ss_dssp             -CEEEEEECCCCCTTTTTH-HHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEE
T ss_pred             CCceEEEECCCCCCcCccc-cCCCCceeCeECCEeHHHHHHHHHHHCCCCEEEEEecccc-HHHHHHHHhcccccCceEE
Confidence            8899999999999999999 8999999999999999999999999999999998875432 3567777764100012344


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (362)
                      ++.++.+.|++++++.+.+++..++++++.||. +.+.++..+++.|.+.+.+++++..+..                 +
T Consensus        79 ~~~~~~~~G~~~al~~a~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~-----------------d  141 (293)
T 1fxo_A           79 YAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVL-----------------D  141 (293)
T ss_dssp             EEECSSCCCGGGHHHHTHHHHTTSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECS-----------------C
T ss_pred             EeeCCCCCCHHHHHHHHHHHhCCCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECC-----------------C
Confidence            555667799999999999888767888899995 4467899999999877777777665432                 2


Q ss_pred             CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHH
Q 018019          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (362)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~  223 (362)
                      +..|+++.+|++|++ ..+.+     |+.             ...+++.++|+|+|+++++..+
T Consensus       142 p~~~g~v~~d~~g~v-~~~~e-----kp~-------------~~~s~~~~~Giy~~~~~~l~~~  186 (293)
T 1fxo_A          142 PERYGVVEFDQGGKA-ISLEE-----KPL-------------EPKSNYAVTGLYFYDQQVVDIA  186 (293)
T ss_dssp             GGGSEEEEECTTSCE-EEEEE-----SCS-------------SCSSSEEEEEEEEECTTHHHHH
T ss_pred             cccCcEEEECCCCcE-EEEEE-----CCC-------------CCCCCeEEEEEEEEcHHHHHHH
Confidence            557899999988875 45653     321             1234789999999999998655

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.95  E-value=5.7e-26  Score=209.88  Aligned_cols=184  Identities=20%  Similarity=0.326  Sum_probs=142.8

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      .|+|||||||.||||+|+ |..+||+|+||+|||||+|+++.|..+|+++|+|+++..+ .+.+.+++.+...-...+.+
T Consensus         3 ~m~aIILAgG~GtRl~pl-T~~~pK~llpi~gkpli~~~l~~l~~~gi~~Iivv~~~~~-~~~i~~~l~~g~~~g~~i~~   80 (295)
T 1lvw_A            3 HMKGIVLAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRD-LPLYRDLLGDGSQFGVRFSY   80 (295)
T ss_dssp             SCEEEEECCCCCSTTTTT-TTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTSEEEE
T ss_pred             ceEEEEECCCCCCccccc-cCCCCceecEECCeeHHHHHHHHHHHCCCCeEEEEeccch-HHHHHHHhhhccccCceEEE
Confidence            478999999999999999 9999999999999999999999999999999999886332 35677777641000123445


Q ss_pred             EEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCcc-cCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCC
Q 018019           82 ATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLV-SDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~i-~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (362)
                      +.++.+.|++++++.+.+++.+++++++.||.+ .+.++.++++.|.+.+..++++..+..                 ++
T Consensus        81 ~~~~~~~G~~~al~~a~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~-----------------dp  143 (295)
T 1lvw_A           81 RVQEEPRGIADAFIVGKDFIGDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR-----------------DP  143 (295)
T ss_dssp             EECSSCCCGGGHHHHTHHHHTTSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS-----------------CC
T ss_pred             eeCCCCCChHHHHHHHHHHhCCCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECC-----------------Cc
Confidence            556677899999999998887677888889964 467999999999876677777665432                 25


Q ss_pred             CcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHH
Q 018019          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (362)
Q Consensus       161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~  223 (362)
                      ..|+++.+|+++++ ..+.+     |+.             ...++++++|+|+|+++++..+
T Consensus       144 ~~~g~v~~d~~g~v-~~~~e-----kp~-------------~~~s~~~~~Giy~f~~~~l~~~  187 (295)
T 1lvw_A          144 RPFGVVEFDSEGRV-ISIEE-----KPS-------------RPKSNYVVPGLYFYDNQVVEIA  187 (295)
T ss_dssp             TTSEEEEECTTSBE-EEEEE-----SCS-------------SCSCSEECCSEEEECTTHHHHH
T ss_pred             ccCCEEEECCCCcE-EEEEE-----CCC-------------CCCCCEEEEEeEEEcHHHHHHH
Confidence            57899999988875 45653     321             1234688999999999998655

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.95  E-value=1.9e-26  Score=226.62  Aligned_cols=229  Identities=20%  Similarity=0.251  Sum_probs=170.1

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      -+|||||||.|+||+    ..+||+|+|++|+|||+|++++|.++|+++|+|++++.  .+.+.+++.+      ++.++
T Consensus        12 ~~~vIlAaG~g~R~~----~~~pK~l~~i~gkpli~~~l~~l~~~g~~~iivv~~~~--~~~i~~~~~~------~i~~v   79 (468)
T 1hm9_A           12 NFAIILAAGKGTRMK----SDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHK--AELVEEVLAG------QTEFV   79 (468)
T ss_dssp             EEEEEECCCCCGGGC----CSSCGGGSEETTEEHHHHHHHHHHTTCCSEEEEEECTT--HHHHHHSSSS------SSEEE
T ss_pred             CcEEEEcCCCCccCC----CCCCcEeeEECCccHHHHHHHHHHhcCCCCEEEEECCC--HHHHHHHhCC------CcEEE
Confidence            369999999999994    47899999999999999999999999999999999865  2355544431      56677


Q ss_pred             EcCCCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019           83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (362)
                      .++...|++++++.+++++.  .+++++++||.  +.+.++.++++.|++.++++++++.+..                 
T Consensus        80 ~~~~~~G~~~sl~~a~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~-----------------  142 (468)
T 1hm9_A           80 TQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD-----------------  142 (468)
T ss_dssp             ECSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS-----------------
T ss_pred             eCCccCChHHHHHHHHHHhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccC-----------------
Confidence            76777899999999988885  46799999996  7778899999999988888888776542                 


Q ss_pred             CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCccc----ccch
Q 018019          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKF----QSLK  234 (362)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~----~s~~  234 (362)
                      ++..|+++.+|+++++ ..+.+++.....              ...+++.++|+|+|+++.|..++++....    ....
T Consensus       143 ~~~~~g~v~~d~~g~v-~~~~ek~~~~~~--------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~  207 (468)
T 1hm9_A          143 NPFGYGRIVRNDNAEV-LRIVEQKDATDF--------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYI  207 (468)
T ss_dssp             CCTTSCEEEECTTCCE-EEEECTTTCCTT--------------GGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCT
T ss_pred             CCCceeEEEECCCCCE-EEEEECCCCChH--------------HhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEH
Confidence            2556888888887765 556532210000              12347899999999999776665532111    1123


Q ss_pred             hhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEE
Q 018019          235 QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCV  314 (362)
Q Consensus       235 ~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~  314 (362)
                      .|+++.+++.+                                                      .++++|++  +||+.
T Consensus       208 ~d~~~~l~~~g------------------------------------------------------~~v~~~~~--~g~~~  231 (468)
T 1hm9_A          208 TDVIGIFRETG------------------------------------------------------EKVGAYTL--KDFDE  231 (468)
T ss_dssp             THHHHHHHHHT------------------------------------------------------CCEEEEEC--SSGGG
T ss_pred             HHHHHHHHHCC------------------------------------------------------CEEEEEEc--CChHH
Confidence            57777766442                                                      35678887  66775


Q ss_pred             E--eCCHHHHHHHhHHHhh
Q 018019          315 R--LNSIQAFMDINRDVIG  331 (362)
Q Consensus       315 r--in~~~~Y~~~n~~~l~  331 (362)
                      .  |++...|.+++..+..
T Consensus       232 ~i~i~t~~dl~~a~~~~~~  250 (468)
T 1hm9_A          232 SLGVNDRVALATAESVMRR  250 (468)
T ss_dssp             GCCCCSHHHHHHHHHHHHH
T ss_pred             hhCCCCHHHHHHHHHHHHH
Confidence            4  7799999999876653

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.95  E-value=1.8e-26  Score=208.98  Aligned_cols=222  Identities=12%  Similarity=0.111  Sum_probs=157.8

Q ss_pred             EEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHh-CCCCeEEEEccCcch-HHHHHHHHHhhhcCCcceEEE
Q 018019            5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADA-ALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         5 avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~-~gi~~v~vv~~~~~~-~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      +||||||.||||+|+ |..+||+|+||+|||||+|+|+++.+ +|+++|+|++++... .+.+.+++..+... ....++
T Consensus         2 ~iIlAaG~GtRl~pl-t~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~~~~~~~~~~~~~~~~-~~~~~~   79 (255)
T 4evw_A            2 IVIPMAGMSSRFFKA-GYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQLGIK-QFYIAE   79 (255)
T ss_dssp             EEEECCSCCHHHHHT-TCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTTHHHHHHHHHHHHTCS-SEEEEE
T ss_pred             EEEEcCCCCcccccC-CCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhhhHHHHHHHHHHcCCC-CceEEE
Confidence            899999999999999 99999999999999999999999999 899999999986531 12344444332111 112345


Q ss_pred             EcCCCCCHHHHHHHHHHhc------CCCcEEEEeCCccc-CCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCcc
Q 018019           83 TVPEDVGTAGALRAIAHHL------TAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKD  155 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i------~~~~~lv~~~D~i~-~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~  155 (362)
                      .++...||+++++.+.+.+      .+++|+|++||.++ +.++.++     ..+++.++++...+              
T Consensus        80 ~~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~--------------  140 (255)
T 4evw_A           80 LHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGG--------------  140 (255)
T ss_dssp             ESSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECC--------------
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecC--------------
Confidence            5677899999999999988      25679999999877 5666543     24667788877643              


Q ss_pred             CCCCCCcceEEEEcCCC--cEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHH-HHH----HHHhcCc
Q 018019          156 KTKKPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS-VLQ----EVLDQKD  228 (362)
Q Consensus       156 ~~~~~~~~~~v~~d~~~--~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~-vl~----~~~~~~~  228 (362)
                         .+ .||++..|++|  ++ ..+.+     |.               ..++++++|+|+|++. .|.    .++++..
T Consensus       141 ---~p-~yG~v~~d~~g~~~V-~~i~E-----K~---------------~~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~  195 (255)
T 4evw_A          141 ---GD-NWSFAKPEHAGSTKV-IQTAE-----KN---------------PISDLCSTGLYHFNRKEDYLEAYREYVARPS  195 (255)
T ss_dssp             ---SS-CSCEEEESSTTCCBE-EEEES-----SS---------------CSSSEEEEEEEEESCHHHHHHHHHHHHTSCG
T ss_pred             ---CC-ceeEEEECCCCCeEE-EEEEe-----cc---------------CccCcEEEeEEEECcHHHHHHHHHHHHhccc
Confidence               13 78999999877  65 56663     31               1357899999999985 232    2222211


Q ss_pred             c----cccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEE
Q 018019          229 K----FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCV  304 (362)
Q Consensus       229 ~----~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (362)
                      .    -...-.|+++.+++++                                                      .++++
T Consensus       196 ~~~~~gE~~ltd~i~~li~~g------------------------------------------------------~~v~~  221 (255)
T 4evw_A          196 QEWERGELYIAPLYNELIQKG------------------------------------------------------LNIHY  221 (255)
T ss_dssp             GGCSCSCCCSTTHHHHHHHTT------------------------------------------------------CCEEE
T ss_pred             ccccCCeEehHHHHHHHHHCC------------------------------------------------------CEEEE
Confidence            0    0112246677766442                                                      35677


Q ss_pred             EEecCCceEEEeCCHHHHHHHhH
Q 018019          305 YIASNSKYCVRLNSIQAFMDINR  327 (362)
Q Consensus       305 ~~~~~~~y~~rin~~~~Y~~~n~  327 (362)
                      |..+ .|+|..|+|+..|.++..
T Consensus       222 ~~~~-~~~w~digt~~~l~~~~~  243 (255)
T 4evw_A          222 HLIA-RHEVIFCGVPDEYTDFLR  243 (255)
T ss_dssp             EECC-GGGCEECCSHHHHHHHHH
T ss_pred             EEec-cccEEECCCHHHHHHHHh
Confidence            7763 389999999999988844

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.94  E-value=8.7e-27  Score=216.95  Aligned_cols=192  Identities=16%  Similarity=0.197  Sum_probs=129.6

Q ss_pred             CCceEEEEeCCCCCCCCCCCCC-CCCeeeeee-CCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCc-
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSK-EVPKALLPV-ANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRL-   77 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~-~~pK~llpv-~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~-   77 (362)
                      |+|+|||||||.|+||+|| |. .+||+|+|| +|+|||+|+++++.++ +++|+|++++.. .+.+.+++.+.+  .. 
T Consensus         3 ~~~~avIlAgG~gtRl~pl-t~~~~pK~ll~i~gg~pli~~~l~~l~~~-~~~i~vv~~~~~-~~~i~~~~~~~~--~~~   77 (308)
T 2qh5_A            3 LKIKNILLSGGSGKRLWPL-SRSLYPKQFLKLFDHKSLFELSFKRNASL-VDETLIVCNEKH-YFLALEEIKNEI--KNK   77 (308)
T ss_dssp             CCEEEEEECC--------------CCGGGCTTBTTBCHHHHHHHHHHTT-CSEEEEEEEGGG-HHHHHHHTTTTC--SSC
T ss_pred             CccEEEEEcCCCCccCCcc-CCCCCCCEEEECCCCCCHHHHHHHHHHcc-CCCEEEEEChhH-HHHHHHHHHHhh--CCC
Confidence            5689999999999999999 75 799999999 5999999999999999 999999998643 236667765411  12 


Q ss_pred             ceEEEEcCCCCCHHHHHHHHHHhcCCC-cEEEEeCCccc-CCC-hHHHHHH---HHhcCCeEEEEEeeeccCCCcccCCC
Q 018019           78 HVEVATVPEDVGTAGALRAIAHHLTAK-DVLVVSGDLVS-DVP-PGAVTAA---HRRHDAVVTAMICSVPVSGLSEAGSS  151 (362)
Q Consensus        78 ~i~i~~~~~~~gt~~al~~~~~~i~~~-~~lv~~~D~i~-~~~-l~~~l~~---h~~~~a~~t~l~~~~~~~~~~~~~~~  151 (362)
                      .+.++.++...||+++++.+...+..+ .++|++||.++ +.+ +.++++.   |.+.++.+|+.+.+..          
T Consensus        78 ~~~~i~~~~~~gt~~al~~a~~~l~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~----------  147 (308)
T 2qh5_A           78 SVGFLLESLSKNTANAIALSALMSDKEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDK----------  147 (308)
T ss_dssp             EEEEEEESSCCCHHHHHHHHHHTSCTTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSS----------
T ss_pred             ccEEEeCCCCCChHHHHHHHHHHhCCCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCC----------
Confidence            345666677899999999999888534 49999999876 555 8899887   6677788888765432          


Q ss_pred             CCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          152 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       152 ~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                             .+..|+++.+|+++++ ..+.++++...    ....+.      ..+.++++|+|+|++++|...++
T Consensus       148 -------~~~~~g~i~~d~~~~V-~~~~Ekp~~~~----~~~~~~------~g~~~~n~Giy~~~~~~ll~~l~  203 (308)
T 2qh5_A          148 -------PNTEFGYIESPNGLDV-KRFIEKPSLDK----AIEFQK------SGGFYFNSGMFVFQAGVFLDELK  203 (308)
T ss_dssp             -------CCTTSEEEECSSSSBC-SEEEESCCHHH----HHHHHH------HCCEEEEEEEEEEEHHHHHHHHH
T ss_pred             -------CCCCceEEEECCCCEE-EEEEECCChHH----HHHHhh------cCCeEEEeEEEEEEHHHHHHHHH
Confidence                   2457899988766665 45653221110    011110      12368999999999998744443

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=99.94  E-value=4.5e-26  Score=210.62  Aligned_cols=183  Identities=20%  Similarity=0.318  Sum_probs=141.3

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |+|||||||.||||+|+ |..+||+|+||+|+|||+|+++.|..+|+++|+|+++..+ .+.+.+++.+...-...+.++
T Consensus         4 m~aIILAgG~GtRl~pl-T~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~-~~~i~~~l~~g~~~g~~i~~~   81 (296)
T 1mc3_A            4 MKGIILAGGSGTRLHPI-TRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPED-KGYFQRLLGDGSEFGIQLEYA   81 (296)
T ss_dssp             CEEEEECCCCCGGGHHH-HTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEEEE
T ss_pred             cEEEEECCCCCCcCCcc-cCCCCceeeEECCeeHHHHHHHHHHhCCCCcEEEEechhH-HHHHHHHHhcccccCceEEEe
Confidence            78999999999999999 9999999999999999999999999999999999886332 356777776411001234455


Q ss_pred             EcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc-ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCC
Q 018019           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (362)
                      .++.+.|++++++.+.+++.+++++++.||. +.+.++..+++.|.+.+..++++..+..                 ++.
T Consensus        82 ~~~~~~G~~~al~~a~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~-----------------dp~  144 (296)
T 1mc3_A           82 EQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVM-----------------DPE  144 (296)
T ss_dssp             ECSSCCCSTHHHHHTHHHHTTSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECS-----------------CCS
T ss_pred             ccCCCCCHHHHHHHHHHHhCCCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECC-----------------Ccc
Confidence            5667799999999999888667788888995 4467899999999776677777655432                 255


Q ss_pred             cceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHH
Q 018019          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (362)
Q Consensus       162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~  223 (362)
                      .|+++.+|++|++ ..+.+     |+.             ...++++++|+|+|+++++..+
T Consensus       145 ~yg~v~~d~~g~v-~~~~e-----kp~-------------~~~s~~~~~Giy~~~~~~l~~~  187 (296)
T 1mc3_A          145 RFGVVEFDDNFRA-ISLEE-----KPK-------------QPKSNWAVTGLYFYDSKVVEYA  187 (296)
T ss_dssp             SSBBCEEETTEEE-EECCB-----SCS-------------SCSCSEEEEEEEECCTHHHHHH
T ss_pred             cCCEEEECCCCcE-EEEEE-----CCC-------------CCCCCEEEEEEEEEcHHHHHHH
Confidence            7899999887764 56653     321             1234789999999999998654

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.94  E-value=4.6e-26  Score=219.60  Aligned_cols=219  Identities=20%  Similarity=0.369  Sum_probs=159.9

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |+|||||||.|+||+|| |.++||+|+|++|+|||+|++++|.++|+++|+|++++.     +.+++.+..   .++.++
T Consensus         1 m~aiIlA~G~g~R~~pl-t~~~~K~ll~i~g~pli~~~l~~l~~~~~~~i~vv~~~~-----i~~~~~~~~---~~i~~~   71 (401)
T 2ggo_A            1 MKAFILAAGSGERLEPI-THTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSK-----NKEYFEKKL---KEISIV   71 (401)
T ss_dssp             CEEEEECCCCCGGGTTG-GGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG-----GHHHHHHHC---TTCEEE
T ss_pred             CeEEEEcCcCccccCcc-cCCCCcceeeECCEeHHHHHHHHHHHCCCCEEEEEeCHH-----HHHHhhccC---CcEEEE
Confidence            57999999999999999 999999999999999999999999999999999999843     455555421   146676


Q ss_pred             EcCC-CCCHHHHHHHHHHhcCCCcEEEEeCCcccC--CChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019           83 TVPE-DVGTAGALRAIAHHLTAKDVLVVSGDLVSD--VPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (362)
Q Consensus        83 ~~~~-~~gt~~al~~~~~~i~~~~~lv~~~D~i~~--~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (362)
                      ..+. ..|++++++.+.+   .++++++.||.++.  .++.++++     .+++++++.+..                 +
T Consensus        72 ~~~~~~~g~~~~l~~~~~---~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~-----------------~  126 (401)
T 2ggo_A           72 TQKDDIKGTGAAILSAKF---NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVS-----------------N  126 (401)
T ss_dssp             ECCTTCCBSTTTGGGCCC---SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECS-----------------C
T ss_pred             eCCCCCCChHHHHHHhcc---CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcC-----------------C
Confidence            6665 6889888887654   47899999997654  55666665     356677665532                 1


Q ss_pred             CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCc----ccccchh
Q 018019          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQ  235 (362)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~----~~~s~~~  235 (362)
                      +..|+++..++++++ ..+.+     |+.             ...+++.++|+|+|++++|..+ +...    +-.++ .
T Consensus       127 ~~~~~~v~~~~~g~v-~~~~e-----k~~-------------~~~~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~-~  185 (401)
T 2ggo_A          127 PKDYGVLVLDNQNNL-SKIIE-----KPE-------------IPPSNLINAGIYKLNSDIFTYL-DKISISERGELEL-T  185 (401)
T ss_dssp             CSSSCEEEECTTSSE-EEEEC-----SCS-------------SCSCSEEEEEEEEEETHHHHHH-HHSCCCSSSCBCH-H
T ss_pred             CcceeEEEECCCCeE-EEEEE-----CCC-------------CCCCcEEEEEEEEEcHHHHHHh-hhcCcCCCCceEH-H
Confidence            446788888877765 45542     321             1235789999999999999765 3221    11122 3


Q ss_pred             hhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEE
Q 018019          236 DVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVR  315 (362)
Q Consensus       236 d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~r  315 (362)
                      |+++.+ ..+                                                      .+++++..  ++++..
T Consensus       186 ~~~~~~-~~g------------------------------------------------------~~v~~~~~--~~~~~d  208 (401)
T 2ggo_A          186 DAINLM-AKD------------------------------------------------------HRVKVIEY--EGYWMD  208 (401)
T ss_dssp             HHHHHH-HHH------------------------------------------------------SCEEEEEC--CSCEEE
T ss_pred             HHHHHH-HCC------------------------------------------------------CcEEEEEe--cceEEc
Confidence            555554 321                                                      24566666  569999


Q ss_pred             eCCHHHHHHHhHHHhhhh
Q 018019          316 LNSIQAFMDINRDVIGEA  333 (362)
Q Consensus       316 in~~~~Y~~~n~~~l~~~  333 (362)
                      |+|+..|.++++.++..+
T Consensus       209 I~t~edl~~a~~~l~~~~  226 (401)
T 2ggo_A          209 IGKPWNIIDVNKWALDNL  226 (401)
T ss_dssp             CCSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999998753

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.93  E-value=4.8e-25  Score=215.89  Aligned_cols=231  Identities=13%  Similarity=0.217  Sum_probs=165.3

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.|||||||.|+||    ...+||+|+|++|+|||+|++++|.++|+++++|++++.  .+.+.+++.+     .++.
T Consensus         4 ~~~~aiIlA~G~g~Rl----~~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~-----~~~~   72 (456)
T 2v0h_A            4 KALSAVILAAGKGTRM----YSDLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHG--GDLMRTHLAN-----EQVN   72 (456)
T ss_dssp             CCEEEEEECCCCCGGG----CSSSCGGGSEETTEEHHHHHHHHHHHTTCSCEEEEECTT--HHHHHHHTTT-----CCCE
T ss_pred             CcceEEEECCCCCccc----CCCCCccccEECCccHHHHHHHHHHhCCCCcEEEEeCCC--HHHHHHHhhc-----CCcE
Confidence            5678999999999999    446899999999999999999999999999999999864  2466665543     2566


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCC
Q 018019           81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (362)
                      ++.++...|++++++.+++++. .+++++++||.  +.+.++.++++.|.+  ++++++..+..                
T Consensus        73 ~v~~~~~~g~~~~~~~~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~----------------  134 (456)
T 2v0h_A           73 WVLQTEQLGTAHAVQQAAPFFKDNENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLD----------------  134 (456)
T ss_dssp             EEECSCCCCHHHHHHHHGGGCCTTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECS----------------
T ss_pred             EEeCCCCCCcHHHHHHHHHhcCCCCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecC----------------
Confidence            7777777999999999998885 57899999996  677889999998866  56777665432                


Q ss_pred             CCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCccc----ccc
Q 018019          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKF----QSL  233 (362)
Q Consensus       158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~----~s~  233 (362)
                       ++..|+.+..| +++ +..+.++++.      ...        .....+.++|+|+|+++.|...++.....    ...
T Consensus       135 -~~~~~g~v~~~-~g~-v~~~~ek~~~------~~~--------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~  197 (456)
T 2v0h_A          135 -NPTGYGRIIRE-NGN-VVAIVEQKDA------NAE--------QLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYY  197 (456)
T ss_dssp             -SCTTSCEEEEE-TTE-EEEEECTTTC------CHH--------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCC
T ss_pred             -CCCccceEEEc-CCc-EEEEEECCCC------Chh--------HhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEE
Confidence             14567888777 555 4566532111      000        11246889999999999776666532111    111


Q ss_pred             hhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceE
Q 018019          234 KQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYC  313 (362)
Q Consensus       234 ~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  313 (362)
                      ..|+++.+...+                                                      .++++|..++...+
T Consensus       198 ~~d~~~~~~~~g------------------------------------------------------~~v~~~~~~~~~~~  223 (456)
T 2v0h_A          198 LTDLIALANQDN------------------------------------------------------CQVVAVQATDVMEV  223 (456)
T ss_dssp             GGGHHHHHHHTT------------------------------------------------------CCEEEEECSCTGGG
T ss_pred             HHHHHHHHHHcC------------------------------------------------------CEEEEEEeCCcceE
Confidence            246666655332                                                      34577766322235


Q ss_pred             EEeCCHHHHHHHhHHHhh
Q 018019          314 VRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       314 ~rin~~~~Y~~~n~~~l~  331 (362)
                      ..|||+..|.++++.+..
T Consensus       224 ~~I~tpeDl~~a~~~l~~  241 (456)
T 2v0h_A          224 EGANNRLQLAALERYFQN  241 (456)
T ss_dssp             CCCSSHHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHH
Confidence            689999999999886553

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.93  E-value=5.6e-25  Score=215.58  Aligned_cols=180  Identities=18%  Similarity=0.289  Sum_probs=135.3

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |+|.|||||||.|+||.    ..+||+|+|++|+|||+|++++|.++|+++|+|++++.  .+.+.+++..     .++.
T Consensus         7 ~~~~aiIlA~G~g~Rl~----~~~pK~l~~i~g~pli~~~l~~l~~~~~~~i~vv~~~~--~~~i~~~~~~-----~~~~   75 (459)
T 4fce_A            7 SSMSVVILAAGKGTRMY----SDLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHG--GELLKKTLAD-----PSLN   75 (459)
T ss_dssp             CCEEEEEEECCCCGGGC----CSSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSC--HHHHHHHC----------C
T ss_pred             CcceEEEECCCCCccCC----CCCCcccCeeCCeeHHHHHHHHHHhCCCCcEEEEeCCC--HHHHHHHhcc-----CCcE
Confidence            57899999999999994    47899999999999999999999999999999999865  3466666653     2456


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcCC-CcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCC
Q 018019           81 VATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKT  157 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~  157 (362)
                      ++.++...|++++++.+++++.. +++++++||.  +.+.++.++++.|.+  .+++++..+..                
T Consensus        76 ~v~~~~~~g~~~~i~~~~~~~~~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~----------------  137 (459)
T 4fce_A           76 WVLQAEQLGTGHAMQQAAPHFADDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLD----------------  137 (459)
T ss_dssp             EEECSSCCCHHHHHHHHGGGSCTTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECS----------------
T ss_pred             EEeCCCCCCcHHHHHHHHHhcCCCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecC----------------
Confidence            66667779999999999998863 7899999996  777889999998865  45566555432                


Q ss_pred             CCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019          158 KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       158 ~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                       ++..|+++..| +++ +..+.++++....              ...++++++|+|+|+++.|..+++.
T Consensus       138 -~~~~~g~v~~~-~g~-v~~~~ek~~~~~~--------------~~~~~~~~~Giy~~~~~~l~~~l~~  189 (459)
T 4fce_A          138 -NPSGYGRIVRE-NGD-VVGIVEHKDASDA--------------QREINEINTGILVANGRDLKRWLSL  189 (459)
T ss_dssp             -CCTTSCEEEEE-TTE-EEEEECGGGCCTT--------------GGGCCEEEEEEEEEEHHHHHHHHHT
T ss_pred             -CCCcccEEEeC-CCc-EEEEEECCCCChH--------------HhhccEEEEEEEEEEHHHHHHHHHH
Confidence             25567888887 565 4566532211000              1234789999999999988777654

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.92  E-value=1.4e-24  Score=196.45  Aligned_cols=168  Identities=16%  Similarity=0.243  Sum_probs=119.0

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |+|.|||||||.|+||+|+ |..+||+|+|++|+|||+|+++++.++|+++|+|++++..  +++.++...+     ++.
T Consensus        24 ~~~~aiIlAaG~gtRl~pl-t~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~--~~i~~~~~~~-----~~~   95 (254)
T 1jyk_A           24 IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK--EQFDYLKEKY-----GVR   95 (254)
T ss_dssp             CCCEEEEEECSCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTG--GGGTHHHHHH-----CCE
T ss_pred             cCceEEEECCCCcccCCcc-cCCCCCEEeeECCEEHHHHHHHHHHHCCCCeEEEEeCCcH--HHHHHHHHhC-----CcE
Confidence            4688999999999999999 8999999999999999999999999999999999998652  3454444332     566


Q ss_pred             EEEcCC--CCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019           81 VATVPE--DVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (362)
Q Consensus        81 i~~~~~--~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (362)
                      ++..++  ..|++++++.+.+.+.  +++|++||.++..++   ++.+.+.++.+|+.   ..  ++             
T Consensus        96 iv~~~~~~~~g~~~al~~a~~~~~--~~lv~~~D~~~~~~~---~~~~~~~~~~~t~~---~~--~~-------------  152 (254)
T 1jyk_A           96 LVFNDKYADYNNFYSLYLVKEELA--NSYVIDADNYLFKNM---FRNDLTRSTYFSVY---RE--DC-------------  152 (254)
T ss_dssp             EEECTTTTTSCTHHHHHTTGGGCT--TEEEEETTEEESSCC---CCSCCCSEEEEECE---ES--SC-------------
T ss_pred             EEECCCccCCCcHHHHHHHHHHCC--CEEEEeCCcccCHHH---HHHHHhCCceEEEE---cc--cC-------------
Confidence            776543  5799999999888773  589999997654442   22222233333322   11  11             


Q ss_pred             CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHH
Q 018019          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (362)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~  223 (362)
                       ...|+++ +|++|++ ..+.+     ++                ...++++|+|+|+++.+..+
T Consensus       153 -~~~~~v~-~d~~g~v-~~~~e-----~~----------------~~~~~~~Giy~~~~~~~~~l  193 (254)
T 1jyk_A          153 -TNEWFLV-YGDDYKV-QDIIV-----DS----------------KAGRILSGVSFWDAPTAEKI  193 (254)
T ss_dssp             -SSCCEEE-ECTTCBE-EEEEC-----CC----------------SSEEBCCSEEEECHHHHHHH
T ss_pred             -CCCeEEE-ECCCCeE-EEEEE-----CC----------------CCCcEEEEEEEEcHHHHHHH
Confidence             1246654 7877765 45552     21                12578999999999765433

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.92  E-value=5.9e-24  Score=192.20  Aligned_cols=191  Identities=18%  Similarity=0.202  Sum_probs=137.1

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.|||||||.||||    .   ||+|+|++|||||+|+++++..+|+++|+|+++.    +.+.+++..+     ++.
T Consensus         1 M~~~aiIlA~G~stRl----p---~K~L~~i~GkPli~~~l~~l~~~~~~~ivVv~~~----~~i~~~~~~~-----g~~   64 (252)
T 3oam_A            1 MSFTVVIPARYQSTRL----P---GKPLADIGGKPMIQWVYEQAMQAGADRVIIATDD----ERVEQAVQAF-----GGV   64 (252)
T ss_dssp             CCEEEEEECCCCCSSS----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHHT-----TCE
T ss_pred             CceEEEEecCcCCCCC----C---CcceeeECCEEHHHHHHHHHHhCCCCeEEEECCH----HHHHHHHHHc-----CCE
Confidence            8899999999999999    3   7999999999999999999999999999999862    4777777642     455


Q ss_pred             EEE--cCCCCCHHHHHHHHHHhc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCC
Q 018019           81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (362)
Q Consensus        81 i~~--~~~~~gt~~al~~~~~~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (362)
                      ++.  ++...||++ +..+.+.+   ..+.+++++||.  +.+.++..+++.|.+.++++++++.+..  +|.++.    
T Consensus        65 v~~~~~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~--~~~~~~----  137 (252)
T 3oam_A           65 VCMTSPNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIE--DEAEVF----  137 (252)
T ss_dssp             EEECCTTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEEC--CHHHHT----
T ss_pred             EEEcCCCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecC--CHHHhh----
Confidence            554  345688887 55666666   346799999994  6678899999999888888988887654  222211    


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                            ..+.+.+.+|++|+++ .+.+     +++.-.+.-...........++.++|+|+|++++|..+...
T Consensus       138 ------~p~~g~vv~d~~g~v~-~fsr-----~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~  198 (252)
T 3oam_A          138 ------NPNAVKVITDKSGYAL-YFSR-----ATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDW  198 (252)
T ss_dssp             ------CTTSCEEEECTTSBEE-EEES-----SCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHS
T ss_pred             ------CCCceEEEECCCCeEE-EEeC-----CCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcC
Confidence                  1123788999988865 5542     22211111000000000134789999999999999888653

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.91  E-value=5.4e-24  Score=200.05  Aligned_cols=190  Identities=19%  Similarity=0.236  Sum_probs=133.0

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCC-cchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVAN-RPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g-~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |.+||||||.||||+||++..+||+|+|++| +|||+|+++++..+ |+++|+|++++... +.+.+++.+.    ....
T Consensus         2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~-~~i~~~l~~~----~~~~   76 (336)
T 2x65_A            2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYV-ERTKKELPEL----PDEN   76 (336)
T ss_dssp             CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGH-HHHHHHCTTS----CGGG
T ss_pred             eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHH-HHHHHHhhcc----ccce
Confidence            7899999999999999933789999999999 99999999999997 89999999986532 3566665431    1123


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCcccCC--Ch----HHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCC
Q 018019           81 VATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDV--PP----GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~i~~~--~l----~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (362)
                      ++.++...||++++..+...+. ++.+++++||+++..  ++    ..+++.|.+.++.+|+.+.+..            
T Consensus        77 ii~e~~~~gta~ai~~a~~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~------------  144 (336)
T 2x65_A           77 IIAEPMKKNTAPACFIGTKLADDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTR------------  144 (336)
T ss_dssp             EEEESSCCCHHHHHHHHHTTSCTTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCS------------
T ss_pred             EEeCCCCCCcHHHHHHHHHhhCCCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeeccc------------
Confidence            5666778999999998877664 356899999986643  44    4445557665777777655432            


Q ss_pred             ccCCCCCCcceEEEEcCC----CcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHH
Q 018019          154 KDKTKKPGRYNIIGMDPT----KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (362)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~----~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~  224 (362)
                           ....||++..+++    ...+..+.++++.+.    ..+.+.      ....++++|+|+|++++|...+
T Consensus       145 -----~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~----a~~~~~------~g~y~~n~Giy~~~~~~ll~~l  204 (336)
T 2x65_A          145 -----PETGYGYIEIGEELEEGVHKVAQFREKPDLET----AKKFVE------SGRFLWNSGMFLWKAREFIEEV  204 (336)
T ss_dssp             -----CCSSSEEEEEEEEEETTEEEEEEEEESCCHHH----HHHHHH------HTCEEEEEEEEEEEHHHHHHHH
T ss_pred             -----CCCCceEEEECCccCCCccEEEEEEECCChHH----HHHHHh------cCCeEEEeeeEEEEHHHHHHHH
Confidence                 1357899987653    123456664332211    111111      1125889999999999884343

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.90  E-value=7.4e-24  Score=199.23  Aligned_cols=183  Identities=21%  Similarity=0.272  Sum_probs=127.8

Q ss_pred             CCceEEEEeCCCCCCCCCCCC-CCCCeeeeeeCC-cchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCc
Q 018019            1 MDFQVVVLAGGTSKKLVPLVS-KEVPKALLPVAN-RPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRL   77 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t-~~~pK~llpv~g-~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~   77 (362)
                      |+|.+||||||.||||+|| | ..+||+|+|++| +|||+|+++++..+ |+++++|++++... +.+.+++.     ..
T Consensus         1 M~m~~VILAgG~GtRl~Pl-s~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~-~~i~~~l~-----~~   73 (337)
T 2cu2_A            1 MKTYALVMAGGRGERLWPL-SREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQE-AVARPYAD-----GI   73 (337)
T ss_dssp             CCEEEEEECCCCCGGGTTT-CBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGH-HHHGGGCS-----SS
T ss_pred             CCeEEEEEcCCCcccCCcc-CCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHH-HHHHHHhc-----cC
Confidence            8899999999999999999 6 689999999999 99999999999998 89999999985432 23333332     12


Q ss_pred             ceEEEEcCCCCCHHHHHHHHHHhc----CCCcEEEEeCCcccCC--ChHHHHH----HHHhcCCeEEEEEeeeccCCCcc
Q 018019           78 HVEVATVPEDVGTAGALRAIAHHL----TAKDVLVVSGDLVSDV--PPGAVTA----AHRRHDAVVTAMICSVPVSGLSE  147 (362)
Q Consensus        78 ~i~i~~~~~~~gt~~al~~~~~~i----~~~~~lv~~~D~i~~~--~l~~~l~----~h~~~~a~~t~l~~~~~~~~~~~  147 (362)
                        .++.++...||+.++..+.. +    .++.+++++||+++..  ++..+++    .|.+ ++.+|+.+.+..      
T Consensus        74 --~~i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~~------  143 (337)
T 2cu2_A           74 --RLLLEPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALGLRPTR------  143 (337)
T ss_dssp             --EEEEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCSS------
T ss_pred             --ceEecCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccCC------
Confidence              22445677899999988865 4    2467999999976543  4444444    3443 677777665432      


Q ss_pred             cCCCCCccCCCCCCcceEEEEcCC----CcEEEEeecCcccccccccchHHHhhcCceeeec-CceeceEEeeCHHHHHH
Q 018019          148 AGSSGAKDKTKKPGRYNIIGMDPT----KQFLLHIATGAELEKDTRIRKSILRAVGQMDIRA-DLMDAHMYAFNRSVLQE  222 (362)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~v~~d~~----~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~-~l~~~giYi~s~~vl~~  222 (362)
                                 .+..||++..+++    ++ +..+.++++.+.    .+..+        .+ .++++|+|+|++++|..
T Consensus       144 -----------~~t~yG~I~~~~~~~~~~~-V~~f~EKp~~~~----a~~~~--------~~g~~~n~Giy~f~~~~ll~  199 (337)
T 2cu2_A          144 -----------PETEYGYIRLGPREGAWYR-GEGFVEKPSYAE----ALEYI--------RKGYVWNGGVFAFAPATMAE  199 (337)
T ss_dssp             -----------CCSSSCEEEEEEEETTEEE-EEEEECCCCHHH----HHHHH--------HTTCEEEEEEEEECHHHHHH
T ss_pred             -----------CCCCceEEEECCcccccCe-EEEEEeCCChHH----HHHHh--------hcCCEEEEEEEEEeHHHHHH
Confidence                       2457899988754    33 456664332111    11111        12 68999999999998844


Q ss_pred             HH
Q 018019          223 VL  224 (362)
Q Consensus       223 ~~  224 (362)
                      .+
T Consensus       200 ~l  201 (337)
T 2cu2_A          200 LF  201 (337)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.88  E-value=2.6e-21  Score=175.56  Aligned_cols=190  Identities=17%  Similarity=0.209  Sum_probs=133.8

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.|||||||.||||    .   +|+|+|++|||||+|+++++..+|+++|+|+++.    +.+.+++..     .++.
T Consensus        17 M~~~aIIlA~G~stRl----p---~K~L~~i~GkPmi~~~l~~l~~~~i~~IvV~t~~----~~i~~~~~~-----~g~~   80 (264)
T 3k8d_A           17 MSFVVIIPARYASTRL----P---GKPLVDINGKPMIVHVLERARESGAERIIVATDH----EDVARAVEA-----AGGE   80 (264)
T ss_dssp             -CCEEEEECCSCCSSS----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHH-----TTCE
T ss_pred             CceEEEEEcCCCCCCC----C---CcceeeECCeEHHHHHHHHHHhCCCCEEEEECCH----HHHHHHHHH-----cCCE
Confidence            7889999999999999    3   4999999999999999999999999999999862    467777664     2455


Q ss_pred             EEE--cCCCCCHHHHHHHHHHhc---CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCC
Q 018019           81 VAT--VPEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (362)
Q Consensus        81 i~~--~~~~~gt~~al~~~~~~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (362)
                      ++.  ++...|++. +..+...+   ..+.++++.||.  +.+.++..+++.|.+.++++++++.+..  ++.+.+.   
T Consensus        81 v~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~--d~~~~~~---  154 (264)
T 3k8d_A           81 VCMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIH--NAEEAFN---  154 (264)
T ss_dssp             EEECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECC--SHHHHTC---
T ss_pred             EEEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcC--CHHHccC---
Confidence            654  344678776 77777666   346799999994  6778899999999888888888877653  2222211   


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                            +... -+++|++|+++ .+.     +++..-++........-...+.+.++|+|+|++++|..+..
T Consensus       155 ------p~~v-kVv~d~~g~~l-~fs-----r~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~  213 (264)
T 3k8d_A          155 ------PNAV-KVVLDAEGYAL-YFS-----RATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVN  213 (264)
T ss_dssp             ------TTSC-EEEECTTSBEE-EEE-----SSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHH
T ss_pred             ------CCce-EEEECCCCeEE-EEe-----cCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHh
Confidence                  2222 25678888865 554     33322222111000000122478999999999999988854

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.88  E-value=1.9e-21  Score=175.60  Aligned_cols=190  Identities=17%  Similarity=0.243  Sum_probs=126.4

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.|||||||.||||    .   ||+|+|++|||||+|+++.+..+|+++|+|+++.    +.+.+++..     .++.
T Consensus         8 M~~~aIIlA~G~stRl----~---~K~L~~i~GkPli~~~l~~l~~~~i~~VvVvt~~----~~i~~~~~~-----~g~~   71 (256)
T 3tqd_A            8 MEFRVIIPARFDSTRL----P---GKALVDIAGKPMIQHVYESAIKSGAEEVVIATDD----KRIRQVAED-----FGAV   71 (256)
T ss_dssp             -CCEEEEECCCC---C----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHH-----TTCE
T ss_pred             CCceEEEEcCCCCCCC----C---CCCeeeECCchHHHHHHHHHHhCCCCEEEEECCH----HHHHHHHHH-----cCCe
Confidence            6778999999999999    3   7999999999999999999999999999999863    467777764     2455


Q ss_pred             EEEc--CCCCCHHHHHHHHHHhc---CCCcEEEEeCCc--ccCCChHHHHHHHHhc-CCeEEEEEeeeccCCCcccCCCC
Q 018019           81 VATV--PEDVGTAGALRAIAHHL---TAKDVLVVSGDL--VSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSG  152 (362)
Q Consensus        81 i~~~--~~~~gt~~al~~~~~~i---~~~~~lv~~~D~--i~~~~l~~~l~~h~~~-~a~~t~l~~~~~~~~~~~~~~~~  152 (362)
                      ++..  +...|++. ++.+.+.+   ..+.++++.||.  +.+..+..+++.|.+. +++++.++.+..  ++.+..   
T Consensus        72 v~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~--~~~~~~---  145 (256)
T 3tqd_A           72 VCMTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPIT--EVDELF---  145 (256)
T ss_dssp             EEECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECC--CHHHHT---
T ss_pred             EEEeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcC--CHHHhh---
Confidence            5543  34577765 77787777   346799999995  6677899999999874 556666665442  222211   


Q ss_pred             CccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHh-hcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          153 AKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILR-AVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       153 ~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~-~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                            ++..+. |++|++|+.+ .+.+     ++..-++.... ........+++.+.|+|+|++++|..+..
T Consensus       146 ------~p~~vk-vv~d~~g~~l-~fsr-----~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~  206 (256)
T 3tqd_A          146 ------NPHSTK-VVLNRRNYAL-YFSH-----APIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLS  206 (256)
T ss_dssp             ------CTTSCE-EEECTTSBEE-EEES-----SCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHH
T ss_pred             ------CCCccE-EEECCCCEEe-EEec-----CCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHh
Confidence                  123333 5688888865 5542     33211111000 00000112578999999999999988854

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.84  E-value=1.5e-19  Score=161.10  Aligned_cols=178  Identities=19%  Similarity=0.216  Sum_probs=120.4

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.|||||||.|+||    .   ||+|+|++|+|||+|+++++.++ +++|+|++++    +.+.++++.     . +.
T Consensus         1 m~~~aiIlA~G~g~R~----~---~K~l~~i~g~pli~~~l~~~~~~-~~~i~v~~~~----~~i~~~~~~-----~-~~   62 (234)
T 2y6p_A            1 MRRAVIIPARLGSTRL----K---EKPLKNLLGKPLIRWVVEGLVKT-GERVILATDS----ERVKEVVED-----L-CE   62 (234)
T ss_dssp             -CEEEEEECCSCCTTT----T---TGGGCEETTEEHHHHHHHHHHTT-TSCEEEEESC----HHHHHHHTT-----T-SE
T ss_pred             CceEEEEEcCCCCCCC----C---CCcceeECCEEHHHHHHHHHHHh-CCEEEEECCh----HHHHHHHHh-----c-eE
Confidence            8889999999999999    3   89999999999999999999999 9999999874    356666653     2 34


Q ss_pred             EEEcC--CCCCHHHHHHHHHHhcCCCcEEEEeCCc-ccC-CChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019           81 VATVP--EDVGTAGALRAIAHHLTAKDVLVVSGDL-VSD-VPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (362)
Q Consensus        81 i~~~~--~~~gt~~al~~~~~~i~~~~~lv~~~D~-i~~-~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (362)
                      ++..+  ...|+++++ .+++.+..+.+++++||. +.+ .++..+++.|.+.++.+|++.....     +         
T Consensus        63 ~~~~~~~~~~g~~~~~-~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-----~---------  127 (234)
T 2y6p_A           63 VFLTPSDLPSGSDRVL-YVVRDLDVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKE-----A---------  127 (234)
T ss_dssp             EEECCTTCCSHHHHHH-HHHTTCCCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSG-----G---------
T ss_pred             EEECCcccccchHHHH-HHHHhCCCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHH-----H---------
Confidence            44432  356777765 466666557799999996 555 7899999999887755555543110     0         


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                      ...+..+. +..+++|++ ..+.+     ++....+.    ..  .. ..+.++|+|+|+++.|..+..
T Consensus       128 ~~~~~~~~-~~~~~~g~v-~~~~e-----~~~~~~~~----~~--~~-~~~~~~giy~~~~~~l~~~~~  182 (234)
T 2y6p_A          128 YERPEDVK-VVLDREGYA-LYFSR-----SPIPYFRK----ND--TF-YPLKHVGIYGFRKETLMEFGA  182 (234)
T ss_dssp             GGCTTSCE-EEECTTSBE-EEEES-----SCCSCCSS----CC--SS-CCEEEEEEEEEEHHHHHHHHH
T ss_pred             hcCCCceE-EEEcCCCCE-eeeec-----CCCCcccc----cc--cc-eeeEEEEEEEcCHHHHHHHHh
Confidence            00122333 345666764 45553     22100000    00  01 256799999999999977754

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.81  E-value=5.7e-19  Score=159.18  Aligned_cols=187  Identities=20%  Similarity=0.220  Sum_probs=123.3

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHH-HHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVL-EQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l-~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      +.|||||||.|+||    .   +|+|+|++|||||+|++ +.+..+++++|+|+++.    +.+.+++..     .++.+
T Consensus         2 ~~aiIlA~G~stR~----~---~K~L~~i~GkPli~~~i~~~~~~~~~~~vvVvt~~----~~i~~~~~~-----~g~~v   65 (253)
T 4fcu_A            2 KHIVIPARFSSSRL----P---GKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDD----ERIAEICRA-----EGVDV   65 (253)
T ss_dssp             EEEEEECCSCCTTS----T---TGGGSEETTEEHHHHHHHHHHTCTTCCEEEEEESC----HHHHHHHHT-----TTCCE
T ss_pred             eEEEEEeCCCCCCC----C---CCceeeECCeEhHHHHHHHHHHhcCCCEEEEECCH----HHHHHHHHH-----cCCeE
Confidence            47999999999999    3   39999999999999999 99998899999999973    466666653     34555


Q ss_pred             EE--cCCCCCHHHHHHHHHHhcC---CCcEEEEeCC--cccCCChHHHHHHHHhc-CCe-EEEEEeeeccCCCcccCCCC
Q 018019           82 AT--VPEDVGTAGALRAIAHHLT---AKDVLVVSGD--LVSDVPPGAVTAAHRRH-DAV-VTAMICSVPVSGLSEAGSSG  152 (362)
Q Consensus        82 ~~--~~~~~gt~~al~~~~~~i~---~~~~lv~~~D--~i~~~~l~~~l~~h~~~-~a~-~t~l~~~~~~~~~~~~~~~~  152 (362)
                      +.  ++...|+ +++..+++.+.   .+.++++.||  ++.+..+..+++.|.+. ++. +|++. ...  ++.+.    
T Consensus        66 ~~~~~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~-~~~--~~~~~----  137 (253)
T 4fcu_A           66 VLTSADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCE-PIH--ALDEF----  137 (253)
T ss_dssp             EECCTTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEE-ECC--CHHHH----
T ss_pred             EEeCCCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeE-EcC--CHHHc----
Confidence            54  3344666 57888877764   3679999999  46678899999999876 344 44443 321  11000    


Q ss_pred             CccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          153 AKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       153 ~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                           .+|..+ -++.|++|+++. +.+     +++.-.+..............+.++|+|+|++++|..+..
T Consensus       138 -----~~p~~~-kvv~d~~g~~l~-fsr-----~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~  198 (253)
T 4fcu_A          138 -----QRDSIV-KVVMSKQNEALY-FSR-----ATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVT  198 (253)
T ss_dssp             -----HCTTSC-EEEECTTSBEEE-EES-----SCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTT
T ss_pred             -----cCCCcc-EEEECCCCeEEE-ecC-----CCCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHh
Confidence                 123333 357888888754 432     2211111000000000012467899999999999988853

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.81  E-value=3.1e-18  Score=155.36  Aligned_cols=189  Identities=16%  Similarity=0.204  Sum_probs=124.1

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.|||||||.|+||    .   +|+|+|++|+|||+|+++++..+++++|+|++++    +.+.+++..     .++.
T Consensus         1 m~~~aiIlA~G~g~R~----~---~K~l~~~~gkpli~~~l~~l~~~~~~~ivvv~~~----~~i~~~~~~-----~~~~   64 (262)
T 1vic_A            1 MSFTVIIPARFASSRL----P---GKPLADIKGKPMIQHVFEKALQSGASRVIIATDN----ENVADVAKS-----FGAE   64 (262)
T ss_dssp             -CCEEEEECCCCCSSS----T---TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHH-----TTCE
T ss_pred             CCcEEEEEcCCCCCCC----C---CCccccCCCeEHHHHHHHHHHhCCCceEEEECCc----HHHHHHHHh-----cCCE
Confidence            8899999999999999    2   3999999999999999999999999999999874    356666653     2455


Q ss_pred             EEEcC--CCCCHHHHHHHHHHhcC---CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCC
Q 018019           81 VATVP--EDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGA  153 (362)
Q Consensus        81 i~~~~--~~~gt~~al~~~~~~i~---~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~  153 (362)
                      ++..+  ...|++ .+..+...+.   .+.+++++||.  +.+.++..+++.|.+.++++++++.+..  ++.+..    
T Consensus        65 ~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~~----  137 (262)
T 1vic_A           65 VCMTSVNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIH--DAEELF----  137 (262)
T ss_dssp             EEECCCSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECC--CHHHHT----
T ss_pred             EEECCccccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecC--CHHHhc----
Confidence            65543  345665 4555555553   46699999995  6677899999999888878777665532  111100    


Q ss_pred             ccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHh-----hcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          154 KDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILR-----AVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       154 ~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~-----~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                            ...+..+..+++|+++ .+.+     +.....++. +     +...-.....+.++|+|+|++++|..+..
T Consensus       138 ------~~~~~~~~~~~~g~v~-~f~~-----~~~~~~r~~-~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~  201 (262)
T 1vic_A          138 ------NPNAVKVLTDKDGYVL-YFSR-----SVIPYDRDQ-FMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQ  201 (262)
T ss_dssp             ------CTTSCEEEECTTSBEE-EEES-----SCSSCCHHH-HTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHH
T ss_pred             ------CCCceEEEECCCCCEe-eeec-----CCCCcCCcc-ccccccccccccccceEEEEEEEEeeHHHHHHHHh
Confidence                  1233445557777654 4432     211111111 0     00000112357899999999999876643

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.80  E-value=3.8e-18  Score=153.03  Aligned_cols=181  Identities=18%  Similarity=0.235  Sum_probs=121.7

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCC-CeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNI-KDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++.|||||||.|+||    .   ||+|+|++|+|||+|+++.+..+|+ ++|+|++++    +.+.+++..     .++
T Consensus         1 m~~~aiIlA~G~~~R~----~---~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~----~~i~~~~~~-----~~~   64 (245)
T 1h7e_A            1 SKAVIVIPARYGSSRL----P---GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD----PRVEQAVQA-----FGG   64 (245)
T ss_dssp             CCEEEEEECCSCCSSS----T---TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC----HHHHHHHHH-----TTC
T ss_pred             CCeEEEEEcCCcCCCC----C---CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCc----HHHHHHHHH-----cCC
Confidence            8899999999999999    3   8999999999999999999999996 999999974    356666654     246


Q ss_pred             EEEEc--CCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhc-CCeEEEEEeeeccCCCcccCCCCCc
Q 018019           80 EVATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRH-DAVVTAMICSVPVSGLSEAGSSGAK  154 (362)
Q Consensus        80 ~i~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~-~a~~t~l~~~~~~~~~~~~~~~~~~  154 (362)
                      .++..  +...|+++++ .+...+..+.+++++||.  +.+.++..+++.|.+. ++++++++.+..   +...      
T Consensus        65 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~------  134 (245)
T 1h7e_A           65 KAIMTRNDHESGTDRLV-EVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAIS---AAEA------  134 (245)
T ss_dssp             EEEECCSCCSSHHHHHH-HHHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEEC---HHHH------
T ss_pred             eEEeCCCccCCcHHHHH-HHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCC---HHHh------
Confidence            66653  3346776544 455555556799999995  5567899999999887 777777665541   1100      


Q ss_pred             cCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHH
Q 018019          155 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (362)
Q Consensus       155 ~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~  224 (362)
                         ..+.. ..+..+++|++ ..+.+     +...-.++.       ...+.+.++|+|+|+++.|..+.
T Consensus       135 ---~~~~~-~~~~~~~~g~~-~~~~~-----~~~~~~r~~-------~~~~~~~~~g~y~~~~~~l~~~~  187 (245)
T 1h7e_A          135 ---AEPST-VKVVVNTRQDA-LYFSR-----SPIPYPRNA-------EKARYLKHVGIYAYRRDVLQNYS  187 (245)
T ss_dssp             ---TCTTS-CEEEECTTCBE-EEEES-----SCSSCCTTG-------GGCCEEEEEEEEEEEHHHHHHGG
T ss_pred             ---cCCCC-cEEEECCCCcE-EEeec-----CCCCCCccc-------ccCceeEEEEEEEcCHHHHHHHH
Confidence               00111 11233566664 34442     111000000       01124679999999999886654

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=99.76  E-value=1.8e-17  Score=147.60  Aligned_cols=167  Identities=14%  Similarity=0.185  Sum_probs=106.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      ++.|||||||.|+||+|+     ||+|+|++|+|||+|+++++.++ +++|+|++ +..  +.+.+++...+  ..++.+
T Consensus        18 ~~~~iIlA~G~g~R~~~~-----~K~l~~i~g~pli~~~l~~l~~~-~~~i~vv~-~~~--~~~~~~~~~~~--~~~~~~   86 (232)
T 2xme_A           18 LMKAVILAAGLGTRLGGV-----PKPLVRVGGCEIILRTMKLLSPH-VSEFIIVA-SRY--ADDIDAFLKDK--GFNYKI   86 (232)
T ss_dssp             CEEEEEEECC------CC-----CGGGCEETTEEHHHHHHHHHGGG-EEEEEEEE-STT--HHHHHHHHTTS--CCCEEE
T ss_pred             cceEEEECCcCcCcCCCC-----CcEEeEECCEEHHHHHHHHHHHh-CCEEEEEe-CCh--HHHHHHHHHhc--CCcEEE
Confidence            478999999999999654     89999999999999999999998 99999998 442  35555543211  124666


Q ss_pred             EEcCCC-CCHHHHHHHHHHhcCCCcEEEEeCCcccCCC-hHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019           82 ATVPED-VGTAGALRAIAHHLTAKDVLVVSGDLVSDVP-PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (362)
Q Consensus        82 ~~~~~~-~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~-l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (362)
                      +.++.. .|++++++.+++.+. +++++++||..++.+ +..+++    .. . +++......               ..
T Consensus        87 v~~~~~~~g~~~~i~~a~~~~~-~~~lv~~~D~p~~~~~~~~l~~----~~-~-~~~~~~~~~---------------~~  144 (232)
T 2xme_A           87 VRHDRPEKGNGYSLLVAKNHVE-DRFILTMGDHVYSQQFIEKAVR----GE-G-VIADREPRF---------------VD  144 (232)
T ss_dssp             EECSCGGGCHHHHHHTTGGGCC-SSEEEEETTEEECHHHHHHHTT----CC-E-EEEESSCSS---------------SC
T ss_pred             EECCCCCCCcHHHHHHHHHHCC-CCEEEEcCCcccCHHHHHHHHh----CC-C-cEEEccccc---------------cC
Confidence            665543 799999999988885 689999999865433 233332    21 2 222211100               01


Q ss_pred             CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHH
Q 018019          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (362)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~  223 (362)
                      +..++.+..+ +|+ +..+.     ++.               ...+++++|+|++++++|..+
T Consensus       145 ~~~~~~v~~~-~g~-v~~~~-----~~~---------------~~~~~~~~g~~~~~~~~~~~l  186 (232)
T 2xme_A          145 IGEATKIRVE-DGR-VAKIG-----KDL---------------REFDCVDTGFFVLDDSIFEHA  186 (232)
T ss_dssp             TTTSCEEEEE-TTE-EEEEE-----TTC---------------SSCSEEEEEEEEECTTHHHHH
T ss_pred             CCcceEEEEc-CCE-EEEee-----cCC---------------CCcceEEEEEEEECHHHHHHH
Confidence            2345556665 454 44554     221               123567899999999999754

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=99.76  E-value=1.2e-17  Score=150.05  Aligned_cols=128  Identities=14%  Similarity=0.165  Sum_probs=93.1

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      .+.+||||||.|+||.+   ..+||+|+|++|+|||+|+++++.+++ +++|+|++++... +.+.+.+..+..+ ..+.
T Consensus         3 ~~~aIIlAaG~g~Rm~~---~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~-~~~~~~~~~~~~~-~~~~   77 (246)
T 3f1c_A            3 LIYAQILAGGKGTRMGN---VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWM-NHAEDNIKKYISD-DRIV   77 (246)
T ss_dssp             CEEEEEECC-----C-C---SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGH-HHHHHHHHHHCCC-TTEE
T ss_pred             ccEEEEECCccccccCC---CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHH-HHHHHHHHHhCCC-CCEE
Confidence            46899999999999943   278999999999999999999999998 9999999986532 3455555544222 2344


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcC-------CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEE
Q 018019           81 VATVPEDVGTAGALRAIAHHLT-------AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAM  136 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~-------~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l  136 (362)
                      ++  ....+..++++.+++.+.       .+.++++.||  ++....+.++++.+.+.++.++++
T Consensus        78 ~~--~~~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~  140 (246)
T 3f1c_A           78 VI--EGGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVI  140 (246)
T ss_dssp             EE--ECCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEE
T ss_pred             EE--CCCCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEE
Confidence            43  344677889988877764       3568999999  577888999999999887666543

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=99.75  E-value=2.3e-17  Score=146.86  Aligned_cols=124  Identities=18%  Similarity=0.250  Sum_probs=84.1

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      +.|||||||.|+||.+   ..+||+|+|++|+|||+|+++++.++ ++++|+|++++... +.+.+++..+.. ......
T Consensus         3 ~~~iIlA~G~g~R~~~---~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~-~~~~~~~~~~~~-~~~~~~   77 (236)
T 2vsh_A            3 IYAGILAGGTGTRMGI---SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWV-SHAEDLVDKYLP-LYKERI   77 (236)
T ss_dssp             EEEEEEEC--------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGH-HHHHHHHHHHCG-GGGGGE
T ss_pred             eEEEEeCCccccccCC---CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHH-HHHHHHHHhccc-cccCce
Confidence            6899999999999965   36899999999999999999999998 59999999986532 356666654310 011111


Q ss_pred             EEcCCCCCHHHHHHHHHHhc----C--C-CcEEEEeCCc--ccCCChHHHHHHHHhcCC
Q 018019           82 ATVPEDVGTAGALRAIAHHL----T--A-KDVLVVSGDL--VSDVPPGAVTAAHRRHDA  131 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i----~--~-~~~lv~~~D~--i~~~~l~~~l~~h~~~~a  131 (362)
                      .......|++++++.++..+    .  . +.++++.||.  +...++..+++.|.+.++
T Consensus        78 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~  136 (236)
T 2vsh_A           78 IITKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA  136 (236)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE
T ss_pred             EEECCCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc
Confidence            12233468889999888776    2  3 5688899996  666789999999987665

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=99.72  E-value=1.7e-17  Score=147.30  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=94.7

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++.|||||||.|+||    .   ||+|+|++|+|||+|+++.+..++ +++|+|+++.    +.+.+++..+     ++
T Consensus         3 m~~~aiIlA~G~g~R~----~---~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~----~~i~~~~~~~-----~~   66 (228)
T 1ezi_A            3 KQNIAVILARQNSKGL----P---LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG----GLIAEEAKNF-----GV   66 (228)
T ss_dssp             CEEEEEEECCSSCSSS----T---TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESC----HHHHHHHHHT-----TC
T ss_pred             CceEEEEecCCCCCCC----C---CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCC----HHHHHHHHHc-----CC
Confidence            3345999999999999    3   899999999999999999999988 7999999973    3555555432     34


Q ss_pred             EEEEcC-----CCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeee
Q 018019           80 EVATVP-----EDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSV  140 (362)
Q Consensus        80 ~i~~~~-----~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~  140 (362)
                      .++..+     ...|++++++.+++.+.  .+.++++.||.  +.+.++..+++.|.+.++++++...+.
T Consensus        67 ~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~  136 (228)
T 1ezi_A           67 EVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPM  136 (228)
T ss_dssp             EEEECCC------CHHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEEC
T ss_pred             EEEeCchHHcCCCCChHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEec
Confidence            444332     34677899999988874  35699999994  566789999998877777766665543

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=99.72  E-value=1.1e-16  Score=141.41  Aligned_cols=125  Identities=20%  Similarity=0.168  Sum_probs=92.9

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++.+||||||.|+||    ...+||+|+|++|+|||+|+++.+..++ +++|+|++++... +.+.+++.     ..++
T Consensus         1 m~~~~vIlA~G~g~R~----~~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~-~~~~~~~~-----~~~v   70 (223)
T 2xwl_A            1 MATVAVVPAAGSGERL----RAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALT-DESKLVFG-----GEDS   70 (223)
T ss_dssp             -CEEEEEECCCCCGGG----TSSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGH-HHHHHHTC-----BTTE
T ss_pred             CceEEEEECCccCccc----CCCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHH-HHHHHHhc-----cCCe
Confidence            8899999999999999    3468999999999999999999999988 9999999986431 22333321     1245


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhc-CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEe
Q 018019           80 EVATVPEDVGTAGALRAIAHHL-TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMIC  138 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i-~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~  138 (362)
                      .++.  +..+.+++++.+++.+ ..+.++++.||.  +...++..+++.|. .+.++++.+.
T Consensus        71 ~~~~--~~~~~~~~i~~al~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~  129 (223)
T 2xwl_A           71 VIVS--GGVDRTESVALALEAAGDAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGL  129 (223)
T ss_dssp             EEEE--CCSSHHHHHHHHHTTCTTCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEE
T ss_pred             EEEc--CCCCHHHHHHHHHHhcCCCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEE
Confidence            5543  3456789999998887 446688889995  55668999999883 2345555443

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=99.66  E-value=3.4e-16  Score=135.34  Aligned_cols=118  Identities=26%  Similarity=0.363  Sum_probs=90.8

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.+||||||.|+||      +.||+|+|++|+|||+|+++++..+++++|+|++++.  .+.+.+++..     .++.
T Consensus         4 ~~~~~iIlA~G~~~R~------g~~K~l~~~~g~pll~~~l~~l~~~~~~~i~vv~~~~--~~~~~~~~~~-----~~~~   70 (197)
T 2wee_A            4 TQITGVVLAAGRSNRL------GTPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGA--ASAVRAAMAL-----DGTD   70 (197)
T ss_dssp             SEEEEEEEECCCCTTT------SSCGGGSEETTEEHHHHHHHHHHHTTCSEEEEEECTT--HHHHHHHSCC-----TTSE
T ss_pred             CceEEEEECCCCcccC------CCCeEcCeeCCccHHHHHHHHHHhcCCCcEEEEeCCC--HHHHHHHhcc-----CCCE
Confidence            5678999999999999      3789999999999999999999999999999999864  2355554432     3566


Q ss_pred             EEEcC-CCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeE
Q 018019           81 VATVP-EDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV  133 (362)
Q Consensus        81 i~~~~-~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~  133 (362)
                      ++..+ ...|++++++.+++.+.  .+.+++++||.  +....+..+++.  +.++++
T Consensus        71 ~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i  126 (197)
T 2wee_A           71 VVVVEDVERGCAASLRVALARVHPRATGIVLMLGDQPQVAPATLRRIIDV--GPATEI  126 (197)
T ss_dssp             EEECC----CCHHHHHHHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSE
T ss_pred             EEECCCcccCHHHHHHHHHHHhcccCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCE
Confidence            66543 34799999999998873  35799999996  456678888877  344444

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=99.66  E-value=5.2e-16  Score=134.36  Aligned_cols=119  Identities=24%  Similarity=0.368  Sum_probs=93.0

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.+||||||.|+||      +.||+|+|++|+|||+|+++.+..+++++|+|++++..  +.+.+++..     .++.
T Consensus         4 ~~~~~iIlA~G~~~R~------g~~K~l~~~~g~pli~~~l~~l~~~~~~~i~vv~~~~~--~~~~~~~~~-----~~~~   70 (199)
T 2waw_A            4 SRVTGVVLAAGYSRRL------GTPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAA--DEVLEKVEL-----DGLD   70 (199)
T ss_dssp             CCEEEEEEESSCCTTT------TSCGGGCEETTEEHHHHHHHHHHTSSCSEEEEEECTTH--HHHHHHSCC-----TTSE
T ss_pred             CceEEEEECCCCCCCC------CCCEEeCEeCccCHHHHHHHHHHhCCCCcEEEEeCCCH--HHHHHHhcc-----CCCE
Confidence            4578999999999999      37899999999999999999999999999999998542  355554432     3566


Q ss_pred             EEEcC-CCCCHHHHHHHHHHhc--CCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEE
Q 018019           81 VATVP-EDVGTAGALRAIAHHL--TAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVT  134 (362)
Q Consensus        81 i~~~~-~~~gt~~al~~~~~~i--~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t  134 (362)
                      ++..+ ...|++++++.+++.+  ..+.++++.||.  +...++..+++.  +.+++++
T Consensus        71 ~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~  127 (199)
T 2waw_A           71 IVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG--GRGATIA  127 (199)
T ss_dssp             EEECCCCCTTCCCHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEE
T ss_pred             EEECCCcccCHHHHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEE
Confidence            66533 3478899999999887  346799999996  456778888887  4455543

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.6e-15  Score=147.91  Aligned_cols=193  Identities=12%  Similarity=0.135  Sum_probs=128.3

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeC-CcchHHHHHHHHHhC----CCC-eEEEEccCcchHHHHHHHHHhhhcC
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELS----NIK-DLIVVVEGADAALRVGGWISAAYVD   75 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~-g~plI~~~l~~l~~~----gi~-~v~vv~~~~~~~~~i~~~~~~~~~~   75 (362)
                      ++.+||||||.||||    ....||+|+||+ |+|||+|+++++...    |+. .++|+++... .+.+.+++++...-
T Consensus        92 k~avViLAGG~GTRm----gs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t-~e~t~~~~~~~~~f  166 (488)
T 2i5k_A           92 KLAVLKLNGGLGTSM----GCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNT-DKDTEHLIKKYSAN  166 (488)
T ss_dssp             GEEEEEECCCBSGGG----TCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTT-HHHHHHHHGGGCSS
T ss_pred             CceEEEEcCCCcccC----CCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCC-HHHHHHHHHhcccc
Confidence            356799999999999    678999999999 999999999999776    532 3666666333 46788888763111


Q ss_pred             CcceEEEEcC------------------------CCCCHHHHHHHH-----HHhc---CCCcEEEEeCCcccC-CChHHH
Q 018019           76 RLHVEVATVP------------------------EDVGTAGALRAI-----AHHL---TAKDVLVVSGDLVSD-VPPGAV  122 (362)
Q Consensus        76 ~~~i~i~~~~------------------------~~~gt~~al~~~-----~~~i---~~~~~lv~~~D~i~~-~~l~~~  122 (362)
                      ...+.++.|.                        .+.|+|+++...     ++.+   ..++++|++||.+.. .|+. +
T Consensus       167 g~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~-~  245 (488)
T 2i5k_A          167 RIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK-I  245 (488)
T ss_dssp             SCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH-H
T ss_pred             CceEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH-H
Confidence            1234444444                        468999988733     3444   257899999997664 6886 6


Q ss_pred             HHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCcee
Q 018019          123 TAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMD  202 (362)
Q Consensus       123 l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~  202 (362)
                      +..|..+++++++.+.+...  |              ...||++..+ +|+  ..+.+-.+..+.  . .....  +.  
T Consensus       246 L~~~~~~~a~~t~~v~~~~~--p--------------~~~yG~Iv~~-dG~--~~iVE~~e~~~e--~-~~~~~--~~--  299 (488)
T 2i5k_A          246 LNHMIETGAEYIMELTDKTR--A--------------DVKGGTLISY-DGQ--VRLLEVAQVPKE--H-IDEFK--NI--  299 (488)
T ss_dssp             HHHHHHSCCSEEEEEEECCG--G--------------GSSSCEEEEE-TTE--EEEECGGGSCTT--S-HHHHT--CT--
T ss_pred             HHHHHhcCCcEEEEEEEecC--C--------------CCceeEEEEE-CCc--EEEEEeccCCHH--H-Hhhcc--cc--
Confidence            68898999999998876431  1              1247887665 454  234431111110  0 00000  00  


Q ss_pred             eecCceeceEEeeCHHHHHHHHhc
Q 018019          203 IRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       203 ~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                      ......++|+|+|+.+.|..+++.
T Consensus       300 ~~~~~~Ntgi~~f~~~~L~~~l~~  323 (488)
T 2i5k_A          300 RKFTNFNTNNLWINLKAVKRLIES  323 (488)
T ss_dssp             TTCCEEEEEEEEEEHHHHHHHHHT
T ss_pred             cccCEEEEEEEEEeHHHHHHHHhh
Confidence            122567999999999999988764

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=99.65  E-value=9.1e-17  Score=139.13  Aligned_cols=128  Identities=20%  Similarity=0.318  Sum_probs=90.6

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |+|||||||.|+||.+     +||+|+|++|+|||+|+++++..+++++|+|++++..  +.+.+++...+....++.++
T Consensus         1 m~aiIlA~G~s~R~~~-----~~K~l~~~~g~pli~~~l~~l~~~~~~~v~vv~~~~~--~~i~~~~~~~~~~~~~~~~~   73 (196)
T 3rsb_A            1 MDALIMAGGKGTRMGG-----VEKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNT--PKTKEYINSAYKDYKNIVVI   73 (196)
T ss_dssp             CEEEEEC----CGGGG-----SCGGGCEETTEEHHHHHHHHHHSSSCCCEEEECCTTC--HHHHHHHHHHTTTTTEEEE-
T ss_pred             CEEEEECCCCCCcCCC-----CCccEEEECCEEHHHHHHHHHHHCCCCEEEEEeCCCh--HHHHHHHHhhccCCCCEEEE
Confidence            5899999999999943     7899999999999999999999999999999998653  47777776532211244444


Q ss_pred             EcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHh-----cCCeEEEEEee
Q 018019           83 TVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRR-----HDAVVTAMICS  139 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~-----~~a~~t~l~~~  139 (362)
                       .....|++++++.+++.+ .+.++++.||.  +.+.++..+++.|.+     .+.+..+++.+
T Consensus        74 -~~~~~g~~~si~~al~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p  135 (196)
T 3rsb_A           74 -DTSGKGYIEDLNECIGYF-SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIP  135 (196)
T ss_dssp             --------CCCCCTTTTTC-SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEE
T ss_pred             -ECCCCCcHHHHHHHHHhC-CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEE
Confidence             344578888888888777 68899999996  777889999999986     55555444443

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=99.62  E-value=1.6e-15  Score=134.43  Aligned_cols=120  Identities=17%  Similarity=0.245  Sum_probs=85.9

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      ++.|||||||.|+||    ...+||+|+|++|+|||+|+++.+.++ ++++|+|++++..  +.+.+++..    ..+..
T Consensus         4 ~~~aiIlAaG~g~R~----~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~--~~~~~~~~~----~~~~~   73 (228)
T 2yc3_A            4 SVSVILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFF--RDIFEEYEE----SIDVD   73 (228)
T ss_dssp             CEEEEEECCCCC-----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGG--HHHHHTTTT----TSSSE
T ss_pred             ceEEEEECCcccccc----CCCCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHH--HHHHHHHHH----hCCCc
Confidence            578999999999999    456899999999999999999999998 8999999998643  234333322    22222


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcCC--CcEEEEeCC--cccCCChHHHHHHHHhcCC
Q 018019           81 VATVPEDVGTAGALRAIAHHLTA--KDVLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~--~~~lv~~~D--~i~~~~l~~~l~~h~~~~a  131 (362)
                      +.......|..++++.+++.+..  +.++++.||  ++...++..+++.|.+.++
T Consensus        74 v~~~~~~~~~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~  128 (228)
T 2yc3_A           74 LSFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGA  128 (228)
T ss_dssp             EEEECCCSSHHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE
T ss_pred             EEEECCCCCHHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHHHHHhcCc
Confidence            32223347889999999988753  457888898  4666789999999877654

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=99.60  E-value=1.1e-15  Score=136.04  Aligned_cols=118  Identities=25%  Similarity=0.330  Sum_probs=93.9

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |+|.+||||||. |||.+. +...||+|+|++|+|||+|+++.+..+++ +|+|++.. +   .+.+++        ++.
T Consensus         1 m~~~~vIlAaG~-tRl~~r-~~~~~K~l~~i~g~pll~~~l~~l~~~~~-~ivvv~~~-~---~i~~~~--------~~~   65 (232)
T 2dpw_A            1 MRPSAIVLAGGK-EAWAER-FGVGSKALVPYRGRPMVEWVLEALYAAGL-SPVYVGEN-P---GLVPAP--------ALT   65 (232)
T ss_dssp             CCCEEEEECCCB-CSGGGT-TTCSBGGGSEETTEETHHHHHHHHHHTTC-EEEEESCC-S---SCSSCC--------SEE
T ss_pred             CceeEEEECCCC-Cccccc-cCCCCceeeEECCEEHHHHHHHHHHhcCC-EEEEEeCh-H---HHhhhc--------CeE
Confidence            889999999999 777666 45589999999999999999999999998 88887553 1   222211        444


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEee
Q 018019           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICS  139 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (362)
                      +   ....|++++++.+++.+. ++++|++||.  +.+.++..+++ | ..++++++...+
T Consensus        66 ~---~~~~g~~~~i~~a~~~~~-~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~  120 (232)
T 2dpw_A           66 L---PDRGGLLENLEQALEHVE-GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVP  120 (232)
T ss_dssp             E---CCCSSHHHHHHHHHHTCC-SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEE
T ss_pred             e---cCCCCHHHHHHHHHHHcC-CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEee
Confidence            4   567899999999999886 7899999996  67778999998 6 556777776554

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=99.60  E-value=4.2e-15  Score=131.83  Aligned_cols=119  Identities=16%  Similarity=0.169  Sum_probs=83.2

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++.+||||||.|+||+    ...||+|+|++|+|||+|+++.+..++ +++|+|++++..  +.+.+ +....  ...+
T Consensus         5 ~~~~aiIlA~G~g~R~~----~~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~--~~~~~-~~~~~--~~~i   75 (231)
T 1vgw_A            5 RKNIALIPAAGIGVRFG----ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED--TFADK-VQTAF--PQVR   75 (231)
T ss_dssp             CCEEEEEECC--------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC--STHHH-HHHHC--TTSE
T ss_pred             CceEEEEEcccccccCC----CCCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccH--HHHHH-HHhcC--CCce
Confidence            56789999999999994    357999999999999999999999886 999999998643  24444 43321  1234


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhc-------CCCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 018019           80 EVATVPEDVGTAGALRAIAHHL-------TAKDVLVVSGDL--VSDVPPGAVTAAHRRHD  130 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i-------~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~  130 (362)
                      .++  .+..|++++++.+++.+       ..+.++++.||.  +....+..+++.+.+.+
T Consensus        76 ~~~--~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~  133 (231)
T 1vgw_A           76 VWK--NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAA  133 (231)
T ss_dssp             EEC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCT
T ss_pred             EEE--cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcC
Confidence            333  45688999999887766       346789999994  55667899999887654

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=99.60  E-value=6.5e-15  Score=130.76  Aligned_cols=122  Identities=14%  Similarity=0.123  Sum_probs=95.0

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++.|||||||.|+||    .   +|+|+|++|+|||+|+++.+..++ +++|+|++..    +.+.+++..     .++
T Consensus         2 ~~~~aiIlA~G~s~R~----~---~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~----~~i~~~~~~-----~g~   65 (229)
T 1qwj_A            2 PHLAALVLARGGSKGI----P---LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH----DEIENVAKQ-----FGA   65 (229)
T ss_dssp             CCEEEEEECCSCCSSS----S---CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESC----HHHHHHHHH-----TTC
T ss_pred             CcEEEEEEcCCCCCCC----C---CcccceECCEEHHHHHHHHHHhCCCcCEEEEECCh----HHHHHHHHH-----cCC
Confidence            7889999999999999    3   499999999999999999999988 6999999852    356666653     245


Q ss_pred             EEEEcC-----CCCCHHHHHHHHHHhcC-CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEe
Q 018019           80 EVATVP-----EDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMIC  138 (362)
Q Consensus        80 ~i~~~~-----~~~gt~~al~~~~~~i~-~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~  138 (362)
                      .++..+     +..+..++++.+++.+. .+.++++.||  ++...++..+++.|.+.+++.++.+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~v~~al~~~~~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~  132 (229)
T 1qwj_A           66 QVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVV  132 (229)
T ss_dssp             EEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred             EEEeChhhhcCCCCcHHHHHHHHHHhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence            555443     23455588888888773 4679999999  46667899999999887776554443

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=99.57  E-value=6.3e-14  Score=137.22  Aligned_cols=194  Identities=14%  Similarity=0.142  Sum_probs=129.1

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeee---CCcchHHHHHHHHHh--------CC----CCeEEEEccCcchHHHHH
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLEL--------SN----IKDLIVVVEGADAALRVG   66 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv---~g~plI~~~l~~l~~--------~g----i~~v~vv~~~~~~~~~i~   66 (362)
                      ++.+||||||.||||    +...||+|+||   .|+|+|++.++++..        .|    +..+++...+.  .+.+.
T Consensus       102 kvavViLAGG~GTRL----g~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t--~e~t~  175 (505)
T 1jv1_A          102 KVAVLLLAGGQGTRL----GVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRT--MESTK  175 (505)
T ss_dssp             CEEEEEECCCCCCTT----SCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTT--HHHHH
T ss_pred             ceEEEEEcCCccccC----CCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCC--HHHHH
Confidence            478999999999999    77899999999   799999999999876        25    55444444433  35788


Q ss_pred             HHHHh--hhc-CCcceEEEEc---------------------CCCCCHHHHHHHHHH-----hc---CCCcEEEEeCCcc
Q 018019           67 GWISA--AYV-DRLHVEVATV---------------------PEDVGTAGALRAIAH-----HL---TAKDVLVVSGDLV  114 (362)
Q Consensus        67 ~~~~~--~~~-~~~~i~i~~~---------------------~~~~gt~~al~~~~~-----~i---~~~~~lv~~~D~i  114 (362)
                      +++++  ++. ++-.+.++.+                     ..+.|+|+.+..+..     .+   ..++++|+++|.+
T Consensus       176 ~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~  255 (505)
T 1jv1_A          176 EFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNI  255 (505)
T ss_dssp             HHHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBT
T ss_pred             HHHHhhhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCcc
Confidence            88875  221 1112444432                     236899988775532     22   2478999999985


Q ss_pred             -cCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchH
Q 018019          115 -SDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKS  193 (362)
Q Consensus       115 -~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~  193 (362)
                       ...+...++..|..+++++++.+.+..                ..+..+|++..+ +|+.  .+.+-.  +.    +..
T Consensus       256 L~~~~d~~~lg~~~~~~~~~~~~v~~k~----------------~~~e~~Gvl~~~-dg~~--~vvEy~--E~----p~~  310 (505)
T 1jv1_A          256 LVKVADPRFIGFCIQKGADCGAKVVEKT----------------NPTEPVGVVCRV-DGVY--QVVEYS--EI----SLA  310 (505)
T ss_dssp             TCCTTCHHHHHHHHHTTCSEEEEEEECC----------------STTCSCCEEEEE-TTEE--EEECGG--GS----CHH
T ss_pred             ccccchHHHHHHHHHcCCCEEEEEEEcc----------------CCccCcceEEEE-CCeE--EEEEEe--eC----CHH
Confidence             777777899999999999998876521                125677888775 3442  222111  11    111


Q ss_pred             HHhh-cCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019          194 ILRA-VGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       194 ~l~~-~~~~~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                      .... .+.-....++.++++|+|+.++|..+.+.
T Consensus       311 ~~~~~~~~g~~~~~~~N~~~~~f~l~~L~~i~~~  344 (505)
T 1jv1_A          311 TAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNV  344 (505)
T ss_dssp             HHHCBCTTSSBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred             HhhhcccccccccceeeEEEEEecHHHHHHHHHh
Confidence            1111 11111234789999999999999888653

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=99.55  E-value=2.2e-14  Score=124.82  Aligned_cols=115  Identities=20%  Similarity=0.270  Sum_probs=88.2

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.+||||||.|+||    . ..||+|+|++|+|||+|+++.+.. ++++|+|++++..  +.+    .     ..++.
T Consensus         5 m~~~~iILAgG~s~Rm----g-~~~K~ll~i~G~pli~~~l~~l~~-~~~~ivvv~~~~~--~~~----~-----~~~~~   67 (201)
T 1e5k_A            5 TTITGVVLAGGKARRM----G-GVDKGLLELNGKPLWQHVADALMT-QLSHVVVNANRHQ--EIY----Q-----ASGLK   67 (201)
T ss_dssp             CSEEEEEECCCCCSSS----C-SSCGGGSEETTEEHHHHHHHHHHH-HCSCEEEECSSSH--HHH----H-----TTSCC
T ss_pred             CcceEEEEcCCCCCcC----C-CCCCceeeECceeHHHHHHHHHHh-hCCEEEEEcCCcH--HHH----h-----hcCCe
Confidence            5688999999999999    3 378999999999999999999984 5899999998542  121    1     12455


Q ss_pred             EEEcCC-C-CCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEE
Q 018019           81 VATVPE-D-VGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVT  134 (362)
Q Consensus        81 i~~~~~-~-~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t  134 (362)
                      ++..+. . .|++++++.+++.+..+.++++.||.  +....+..+++.  ..+++++
T Consensus        68 ~v~~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~--~~~~~~~  123 (201)
T 1e5k_A           68 VIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQ--RKDAPVV  123 (201)
T ss_dssp             EECCCTTCCCSHHHHHHHHHHHCCSSEEEEEETTCTTCCTTHHHHHHHT--CTTCSEE
T ss_pred             EEecCCCCCCCHHHHHHHHHHhCCCCcEEEEeCCcCcCCHHHHHHHHhh--cCCCCEE
Confidence            554432 2 69999999999988767799999996  666668888875  3444443

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=99.55  E-value=5.6e-15  Score=128.13  Aligned_cols=114  Identities=19%  Similarity=0.279  Sum_probs=86.3

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.+||||||.|+||    .  .||+|+|++|+|||+|+++.+..+   +++|++++.  .+.+.+++.      .++ 
T Consensus         1 M~~~~iIlAgG~g~Rm----g--~~K~l~~i~g~pll~~~l~~l~~~---~ivvv~~~~--~~~~~~~~~------~~~-   62 (197)
T 3d5n_A            1 MNIGVIILAAGEGKRF----G--GDKLLAKIDNTPIIMRTIRIYGDL---EKIIIVGKY--VNEMLPLLM------DQI-   62 (197)
T ss_dssp             CCEEEEEECSCCTTCC----C--SSGGGSBSSSSBHHHHHHHHTTTS---BCCEEECTT--HHHHGGGCT------TSC-
T ss_pred             CceEEEEECCcCcccC----C--CCeeeCEeCceEHHHHHHHHHHhC---CEEEEECCC--HHHHHHHhc------CCE-
Confidence            8899999999999999    3  489999999999999999999876   888888754  123333222      245 


Q ss_pred             EEEcCC-CCCHHHHHHHHHHhcCC-CcEEEEeCCc--ccCCChHHHHHHHHhcCCeE
Q 018019           81 VATVPE-DVGTAGALRAIAHHLTA-KDVLVVSGDL--VSDVPPGAVTAAHRRHDAVV  133 (362)
Q Consensus        81 i~~~~~-~~gt~~al~~~~~~i~~-~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~  133 (362)
                      ++..+. ..|++++++.+++.+.. +.++++.||.  +....+..+++.+ +.++++
T Consensus        63 ~v~~~~~~~G~~~si~~al~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~  118 (197)
T 3d5n_A           63 VIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKA  118 (197)
T ss_dssp             EEECTTGGGCHHHHHHHHHHHTTTSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSE
T ss_pred             EEECCCCCCCHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcE
Confidence            554333 37999999999988864 6799999996  4556678888776 444444

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=99.53  E-value=2.5e-13  Score=120.52  Aligned_cols=113  Identities=18%  Similarity=0.234  Sum_probs=88.4

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      +.+||||||.|+||    ....||+|+|++|+|||+|+++.+..++ +++|+|++++... +.+.+++..      .+.+
T Consensus         8 ~~aIIlAaG~g~Rm----g~~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~-~~~~~~~~~------~v~~   76 (231)
T 3q80_A            8 VVAIVPAAGSGERL----AVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRT-DEARQILGH------RAMI   76 (231)
T ss_dssp             EEEEEECCCCCTTT----CSSSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGH-HHHHHHHGG------GCEE
T ss_pred             eEEEEECCCCCccC----CCCCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHH-HHHHHHhcC------CeEE
Confidence            57999999999999    6678999999999999999999999875 8999999986531 344444331      3444


Q ss_pred             EEcCCCCCHHHHHHHHHHhcCC----CcEEEEeCC--cccCCChHHHHHHHHh
Q 018019           82 ATVPEDVGTAGALRAIAHHLTA----KDVLVVSGD--LVSDVPPGAVTAAHRR  128 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~----~~~lv~~~D--~i~~~~l~~~l~~h~~  128 (362)
                      +.  ...+..++++.+++.+..    +.++++.||  ++....+..+++.+.+
T Consensus        77 v~--gg~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~  127 (231)
T 3q80_A           77 VA--GGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD  127 (231)
T ss_dssp             EE--CCSSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred             Ec--CCCchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence            43  334567899999888763    568899999  6777889999998876

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=99.53  E-value=7e-15  Score=130.99  Aligned_cols=119  Identities=20%  Similarity=0.243  Sum_probs=89.9

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++.+||||||.|+||    ....||+|+|++|+|||+|+++.+..++ +++|+|++++..  +.+.+ +..+ .. ..+
T Consensus         6 ~~~~~iIlA~G~g~R~----~~~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~--~~~~~-~~~~-~~-~~v   76 (236)
T 1i52_A            6 LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGD--SRFAQ-LPLA-NH-PQI   76 (236)
T ss_dssp             CCEEEEEEECCCCGGG----CCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTC--CSGGG-SGGG-GC-TTE
T ss_pred             CceeEEEECCcCcccc----CCCCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccH--HHHHH-HHhc-CC-CCE
Confidence            5789999999999999    4458999999999999999999999887 899999998542  13333 2221 10 134


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 018019           80 EVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDL--VSDVPPGAVTAAHRRHD  130 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~--i~~~~l~~~l~~h~~~~  130 (362)
                      .++.  ...|+.++++.+++.+. .+.++++.||.  +....+..+++.+.+.+
T Consensus        77 ~~~~--~~~g~~~~i~~al~~~~~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~  128 (236)
T 1i52_A           77 TVVD--GGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSR  128 (236)
T ss_dssp             EEEE--CCSSHHHHHHHHHHTSTTCSEEEECCTTCTTCCHHHHHHHHGGGGTCS
T ss_pred             EEEC--CCCCHHHHHHHHHHhcCCCCEEEEEcCccccCCHHHHHHHHHHHHhcC
Confidence            4443  33689999999988874 46799999994  45566888888876655

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=99.50  E-value=8.9e-14  Score=123.53  Aligned_cols=118  Identities=20%  Similarity=0.239  Sum_probs=85.9

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      +.|||||||.|+||    ....||+|+|++|+|||+|+++.+..++ +++|+|++++... +.+.+++.      .+..+
T Consensus        14 ~~aiILAaG~s~Rm----~~~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~-~~~~~~~~------~~~~~   82 (234)
T 1vpa_A           14 NVAILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF-EVVEKRVF------HEKVL   82 (234)
T ss_dssp             EEEEEEECCCCGGG----CCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGH-HHHHTTCC------CTTEE
T ss_pred             CeEEEEcCcchhhc----CCCCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHH-HHHHHHhc------cCCce
Confidence            68999999999999    4457999999999999999999999998 8999999985431 12222221      11122


Q ss_pred             EEcCCCCCHHHHHHHHHHhcC---CCcEEEEeCCc--ccCCChHHHHHHHHhcCC
Q 018019           82 ATVPEDVGTAGALRAIAHHLT---AKDVLVVSGDL--VSDVPPGAVTAAHRRHDA  131 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~---~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a  131 (362)
                      .......+..++++.+++.+.   .+.++++.||.  +....+..+++.+.+.++
T Consensus        83 ~~~~gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~  137 (234)
T 1vpa_A           83 GIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGA  137 (234)
T ss_dssp             EEEECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE
T ss_pred             EEeCCCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC
Confidence            222233457788888877763   34577888994  666788999998876553

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=99.47  E-value=8.8e-14  Score=124.02  Aligned_cols=112  Identities=22%  Similarity=0.263  Sum_probs=79.8

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |++.|||||||.|+||.    .. ||+|+|++|+|||+|+++.  ..++++|+|+++. ..    .+ +.     ..++.
T Consensus        24 M~~~aiILAgG~s~Rm~----~~-~K~l~~i~gkpli~~~l~~--~~~~~~ivvv~~~-~~----~~-~~-----~~~v~   85 (236)
T 2px7_A           24 MEVSVLIPAAGNGLRLG----RG-PKAFLQVGGRTLLEWTLAA--FRDAAEVLVALPP-GA----EP-PK-----GLGAV   85 (236)
T ss_dssp             CCCEEEEECCC-----------C-CGGGCBCSSSBHHHHHHHH--TTTCSEEEEEECT-TC----CC-CT-----TCSCE
T ss_pred             CceEEEEEcCCCCccCC----CC-CCeEEEECCEEHHHHHHHh--cCCCCeEEEEeCH-HH----HH-hh-----cCCcE
Confidence            56679999999999993    34 9999999999999999999  6789999999984 11    11 11     12454


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCe
Q 018019           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAV  132 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~  132 (362)
                      ++.  +..|..++++.++..+..+.+++++||.  +....+..+++.+.+.++.
T Consensus        86 ~~~--~~~~~~~~i~~al~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~  137 (236)
T 2px7_A           86 FLE--GGATRQASVARLLEAASLPLVLVHDVARPFVSRGLVARVLEAAQRSGAA  137 (236)
T ss_dssp             EEE--CCSSHHHHHHHHHHHCCSSEEEECCTTCCCCCHHHHHHHHHHHHHHSEE
T ss_pred             EEe--CCCchHHHHHHHHHHcCCCeEEEecCccccCCHHHHHHHHHHHHhcCCe
Confidence            442  3457889999998888656689999994  5556789999988765543

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=99.45  E-value=7e-14  Score=121.57  Aligned_cols=103  Identities=23%  Similarity=0.276  Sum_probs=80.8

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      ++.+||||||.|+||    .  .||+|+|++|+|||+|+++.+..+ +++|+|++++...     +++.       ++.+
T Consensus        14 ~~~~iILA~G~g~Rm----g--~~K~ll~i~g~pll~~~l~~l~~~-~~~i~vv~~~~~~-----~~~~-------~~~~   74 (201)
T 2e8b_A           14 VNTCYVLAGGKSKRF----G--EDKLLYEIKGKKVIERVYETAKSV-FKEVYIVAKDREK-----FSFL-------NAPV   74 (201)
T ss_dssp             CCEEEEEEESSCCCC----S--TTHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEESCSGG-----GGGG-------TCCE
T ss_pred             CceEEEECCCCCccC----C--CCcccceECceEHHHHHHHHHHHh-CCEEEEEeCcHHH-----hhcC-------CceE
Confidence            458999999999999    3  789999999999999999999988 9999999986431     1111       4555


Q ss_pred             EEcC-CCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHH-HH
Q 018019           82 ATVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGA-VT  123 (362)
Q Consensus        82 ~~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~-~l  123 (362)
                      +..+ ...|++++++.+++.+..+.+++++||.  +....+.. ++
T Consensus        75 v~~~~~~~g~~~~i~~al~~~~~~~~lv~~~D~P~i~~~~i~~~l~  120 (201)
T 2e8b_A           75 VLDEFEESASIIGLYTALKHAKEENVFVLSGDLPLMKKETVLYVLE  120 (201)
T ss_dssp             EECCCSSCCHHHHHHHHHHHCSSSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             EecCCCCCCcHHHHHHHHHHcCCCCEEEEeCCcCcCCHHHHHHHHh
Confidence            5533 4589999999999888667899999996  33444555 54

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=99.44  E-value=5.1e-13  Score=116.65  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=85.7

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |.|||||||.|+||    .  .||+|+|++|+|||+|+++.+..+   +|+|+++..   +.+.. +..    ..++.++
T Consensus         1 m~aiILAgG~s~Rm----g--~~K~ll~~~G~pli~~~~~~l~~~---~vvvv~~~~---~~~~~-~~~----~~~~~~v   63 (208)
T 3ngw_A            1 MKVAVLVGGVGRRI----G--MEKTEVMLCGKKLIEWVLEKYSPF---QTVFVCRDE---KQAEK-LSS----RYEAEFI   63 (208)
T ss_dssp             CEEEEECCCCCTTT----T--SCGGGCEETTEEHHHHHHHHHTTS---EEEEECSSH---HHHHH-HHT----TSCSCEE
T ss_pred             CEEEEECCCchhhC----C--CCCcccEECCeeHHHHHHHHhcCC---CEEEEECCH---HHHHH-HHH----hcCCeEE
Confidence            57999999999999    3  789999999999999999999876   899998742   23332 222    2345555


Q ss_pred             EcC-CCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEE
Q 018019           83 TVP-EDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus        83 ~~~-~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~  135 (362)
                      ... ...|..++++.+++.+ .+.+ ++.||.  +....+..+++.+.+.++++.+
T Consensus        64 ~d~~~~~G~~~si~~gl~~~-~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~  117 (208)
T 3ngw_A           64 WDLHKGVGSIAGIHAALRHF-GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI  117 (208)
T ss_dssp             CCTTCCCSHHHHHHHHHHHH-SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             ecCCCCCChHHHHHHHHHHc-CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence            432 2368889999998888 6667 999995  5566788888887765666544

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=99.44  E-value=1.9e-13  Score=129.27  Aligned_cols=114  Identities=18%  Similarity=0.250  Sum_probs=89.5

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHh-CCCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLEL-SNIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~-~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++.+||||||.|+||    ....||+|+|++|+|||+|+++.+.. .++++|+|+++ .  .+.+.+++.       ++
T Consensus         2 mki~aIILAaG~ssRm----g~~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~--~~~i~~~~~-------~v   67 (371)
T 1w55_A            2 SEMSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-N--ITYMKKFTK-------NY   67 (371)
T ss_dssp             CCEEEEEECCSCCTTT----CSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-C--HHHHHTTCS-------SS
T ss_pred             CccEEEEECCCCCccC----CCCCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-C--HHHHHHHhC-------CC
Confidence            5788999999999999    44679999999999999999999988 57999999998 3  233332221       24


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcC
Q 018019           80 EVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHD  130 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~  130 (362)
                      .++  ....|..++++.+++.+..+.++++.||.  +....+..+++.+.+.+
T Consensus        68 ~~v--~~g~g~~~sv~~aL~~l~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~  118 (371)
T 1w55_A           68 EFI--EGGDTRAESLKKALELIDSEFVMVSDVARVLVSKNLFDRLIENLDKAD  118 (371)
T ss_dssp             EEE--ECCSSHHHHHHHHHTTCCSSEEEEEETTCTTCCHHHHHHHHTTGGGCS
T ss_pred             EEE--eCCCChHHHHHHHHHhcCCCeEEEEeCCcccCCHHHHHHHHHHHHhcC
Confidence            454  33567889999998887667799999994  55667888988876654

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=99.37  E-value=4.6e-12  Score=123.42  Aligned_cols=195  Identities=14%  Similarity=0.111  Sum_probs=124.6

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeC-CcchHHHHHHHHHhCCCC-----eEEEEccCcchHHHHHHHHH-h--h
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELSNIK-----DLIVVVEGADAALRVGGWIS-A--A   72 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~-g~plI~~~l~~l~~~gi~-----~v~vv~~~~~~~~~i~~~~~-~--~   72 (362)
                      ++.+||||||.||||    ....||+|+||+ |+|+|++.++++...|..     .++|.+... ..+.+.++++ +  +
T Consensus        75 k~avViLAGGlGTRL----g~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~-t~e~t~~~f~~~~~~  149 (505)
T 2oeg_A           75 STVVLKLNGGLGTGM----GLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFN-TSASTKSFLKARYPW  149 (505)
T ss_dssp             TEEEEEEECCCCGGG----TCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHH-HHHHHHHHHHHHCHH
T ss_pred             cceEEEEcCCccccc----CCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCC-CHHHHHHHHhhhhhc
Confidence            357899999999999    568999999999 999999999999887533     466665533 2467888887 3  3


Q ss_pred             hc-CCcceEEEEc-----------------------CCCCCHHHHHHHH-----HHhc---CCCcEEEEeCCccc-CCCh
Q 018019           73 YV-DRLHVEVATV-----------------------PEDVGTAGALRAI-----AHHL---TAKDVLVVSGDLVS-DVPP  119 (362)
Q Consensus        73 ~~-~~~~i~i~~~-----------------------~~~~gt~~al~~~-----~~~i---~~~~~lv~~~D~i~-~~~l  119 (362)
                      +. ++-.+.+..|                       ..+.|+|+.+...     ++.+   ..++++|.++|.++ ..|+
T Consensus       150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~  229 (505)
T 2oeg_A          150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK  229 (505)
T ss_dssp             HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH
T ss_pred             cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH
Confidence            31 1112221101                       1245999988744     3332   25789999999877 4577


Q ss_pred             HHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEc------CCCcE------EEEeecCcccccc
Q 018019          120 GAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD------PTKQF------LLHIATGAELEKD  187 (362)
Q Consensus       120 ~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d------~~~~~------l~~~~~~~~~ek~  187 (362)
                       .++..|.++++++++.+.+...  +              ...+|++..+      .+|+.      + .+.+-.     
T Consensus       230 -~llg~~~~~~ad~~~~v~~k~~--~--------------d~~~Gvl~~~~~~~~~~dg~~nvEyn~~-~llEys-----  286 (505)
T 2oeg_A          230 -RVLAYMEKEKIDFLMEVCRRTE--S--------------DKKGGHLARQTVYVKGKDGQPDAEKRVL-LLRESA-----  286 (505)
T ss_dssp             -HHHHHHHHHTCSEEEEEEECCT--T--------------CCSSEEEEEEEEEECCSSSCCCEEEEEE-EEEEGG-----
T ss_pred             -HHHHHHHhcCCcEEEEEEEecC--C--------------ccceeEEEEecccccccCCccccccCce-eEEEec-----
Confidence             8999999999999998876542  1              2356777662      34550      1 122101     


Q ss_pred             cccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019          188 TRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       188 ~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                       .++....... .-.....+.++...+|+-+.+..+++.
T Consensus       287 -e~p~e~~~~~-~g~~~f~~~Ninn~~~~l~~l~~~~~~  323 (505)
T 2oeg_A          287 -QCPKADMESF-QDINKYSFFNTNNLWIRLPVLLETMQE  323 (505)
T ss_dssp             -GSCGGGHHHH-HCTTTTCEEEEEEEEEEHHHHHHHHHH
T ss_pred             -cCChhhhhcc-cCccccCeeEEEEEEEEHHHHHHHHhh
Confidence             1222211110 000112446888889999988887764

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=99.24  E-value=1.6e-10  Score=112.76  Aligned_cols=192  Identities=11%  Similarity=0.147  Sum_probs=121.9

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHhC--------C------CCeEEEEccCcchHHH
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS--------N------IKDLIVVVEGADAALR   64 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~~--------g------i~~v~vv~~~~~~~~~   64 (362)
                      ++.+||||||.||||    +...||+|+||+   |+|+|++.++++...        |      +..+++...+.  .+.
T Consensus       103 kvavvlLaGG~GTRL----g~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t--~~~  176 (486)
T 2yqc_A          103 EVAVLLMAGGQGTRL----GSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPT--RNA  176 (486)
T ss_dssp             CEEEEEEEESBCGGG----TCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGG--HHH
T ss_pred             CeEEEEEcCCccccC----CCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCC--HHH
Confidence            478899999999999    788999999999   999999999999876        5      65555555543  457


Q ss_pred             HHHHHHh--hhc-CCcceEEEEcC----------------------CCCCHHHHHHHHH-----Hhc---CCCcEEEEeC
Q 018019           65 VGGWISA--AYV-DRLHVEVATVP----------------------EDVGTAGALRAIA-----HHL---TAKDVLVVSG  111 (362)
Q Consensus        65 i~~~~~~--~~~-~~~~i~i~~~~----------------------~~~gt~~al~~~~-----~~i---~~~~~lv~~~  111 (362)
                      +.+++++  ++. +...+.+..|+                      .+.|+|+.+....     +.+   ..+++.+.+.
T Consensus       177 t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~v  256 (486)
T 2yqc_A          177 TESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCV  256 (486)
T ss_dssp             HHHHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEET
T ss_pred             HHHHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECC
Confidence            8888875  232 11123222211                      2568888765442     222   2467888888


Q ss_pred             Cc-cc-CCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcC-CCcE-EEEeecCcccccc
Q 018019          112 DL-VS-DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP-TKQF-LLHIATGAELEKD  187 (362)
Q Consensus       112 D~-i~-~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~-~~~~-l~~~~~~~~~ek~  187 (362)
                      |. +. ..|. .++..|..+++++++.+.+...  +              ....|++.... +|+. ++.+.+     . 
T Consensus       257 DN~l~~~~Dp-~~lg~~~~~~~~~~~~vv~k~~--~--------------~e~~Gvl~~~~~dg~~~vvEy~E-----~-  313 (486)
T 2yqc_A          257 DNCLVKVADP-IFIGFAIAKKFDLATKVVRKRD--A--------------NESVGLIVLDQDNQKPCVIEYSE-----I-  313 (486)
T ss_dssp             TBTTCCTTCH-HHHHHHHHHTCSEEEEEEECCS--T--------------TCCCCEEEEETTTTEEEEECGGG-----S-
T ss_pred             CCceeeccCH-HHHHHHHHcCCCEEEEEEEcCC--C--------------CCceeEEEEEecCCCEEEEEEec-----C-
Confidence            84 33 4554 4788899999999987765421  1              24567776542 4542 333322     1 


Q ss_pred             cccchHHHhh-cCc--eeeecCceeceEEeeCHHHHHHHHh
Q 018019          188 TRIRKSILRA-VGQ--MDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       188 ~~i~~~~l~~-~~~--~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                         +...... .+.  -....+..++++|+|+.++|...+.
T Consensus       314 ---~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~l~~L~~~l~  351 (486)
T 2yqc_A          314 ---SQELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKMIP  351 (486)
T ss_dssp             ---CHHHHHCEETTEEEEESSCEEEEEEEEEEHHHHHHHHH
T ss_pred             ---CHHHhhcccccccccccccceeEEEEEEeHHHHHHHHH
Confidence               1111111 111  1233468899999999999987444

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=99.21  E-value=7.3e-10  Score=104.77  Aligned_cols=191  Identities=10%  Similarity=0.151  Sum_probs=122.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeee---CCcchHHHHHHHHHh-------------CCCCeEEEEccCcchHHHH
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLEL-------------SNIKDLIVVVEGADAALRV   65 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv---~g~plI~~~l~~l~~-------------~gi~~v~vv~~~~~~~~~i   65 (362)
                      ++.+|+||||.||||    +...||+|+||   .|+|++++.++.+.+             .++. .+|.++... .+.+
T Consensus        35 kvavvlLAGG~GTRL----G~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip-~~IMtS~~t-~e~t  108 (405)
T 3oc9_A           35 KTALITPAGGQGSRL----GFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIH-WFLMTNEET-IEEI  108 (405)
T ss_dssp             CEEEEEECCSBCTTT----TCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCE-EEEEECTTT-HHHH
T ss_pred             ceEEEEecCCCcccc----cCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCC-EEEEeCCcc-HHHH
Confidence            357899999999999    77899999999   899999999988853             4565 444444333 4688


Q ss_pred             HHHHHh--hhc-CCcceEEEEc---------------------CCCCCHHHHHHHHH-----HhcC---CCcEEEEeCCc
Q 018019           66 GGWISA--AYV-DRLHVEVATV---------------------PEDVGTAGALRAIA-----HHLT---AKDVLVVSGDL  113 (362)
Q Consensus        66 ~~~~~~--~~~-~~~~i~i~~~---------------------~~~~gt~~al~~~~-----~~i~---~~~~lv~~~D~  113 (362)
                      .+++++  ++. +...+.+..|                     ..+.|+|+.+....     +.+.   .++++|.+.|.
T Consensus       109 ~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN  188 (405)
T 3oc9_A          109 NNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDN  188 (405)
T ss_dssp             HHHHHHTGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTB
T ss_pred             HHHHHhCcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCC
Confidence            888875  222 1112433221                     12478887666432     2221   36788888897


Q ss_pred             -ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCc-EEEEeecCcccccccccc
Q 018019          114 -VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQ-FLLHIATGAELEKDTRIR  191 (362)
Q Consensus       114 -i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~-~l~~~~~~~~~ek~~~i~  191 (362)
                       +.....-.++..|.++++++++-+.+...  |              .+..|++...+ |+ .++.+.+.+. +..    
T Consensus       189 ~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~--~--------------dek~Gvl~~~d-g~~~vvEysei~~-e~e----  246 (405)
T 3oc9_A          189 ILCKDVDPNMIGYMDLLQSEICIKIVKKGF--K--------------EEKVGVLVKEQ-ERIKVVEYTELTD-ELN----  246 (405)
T ss_dssp             TTCCSSCHHHHHHHHHTTCSEEEEEEECCS--T--------------TCSCCEEEEET-TEEEEECGGGCCT-TTT----
T ss_pred             cccccCCHHHHHHHHHcCCCEEEEEEECCC--C--------------CCccceEEEEC-CeeEEEEEeeCCH-HHh----
Confidence             88788888999999999999988776431  1              24567776432 32 2233322111 100    


Q ss_pred             hHHHhhcCceeeecCceeceEEeeCHHHHHHHH
Q 018019          192 KSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (362)
Q Consensus       192 ~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~  224 (362)
                          .+.+.-....+..+.++++|+.++|..+.
T Consensus       247 ----~~~~~g~l~fn~~Ni~~h~fs~~fL~~i~  275 (405)
T 3oc9_A          247 ----KQLSNGEFIYNCGHISINGYSTSFLEKAA  275 (405)
T ss_dssp             ----CBCTTSCBSSCEEEEEEEEEEHHHHHHHT
T ss_pred             ----hcCCCCceeeccceeEeeecCHHHHHHhh
Confidence                00111122346678899999999998875

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=97.78  E-value=2.7e-05  Score=67.48  Aligned_cols=104  Identities=17%  Similarity=0.179  Sum_probs=75.2

Q ss_pred             CceEEEEe--CCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeE-EEEccCcchHHHHHHHHHhhhcCCcc
Q 018019            2 DFQVVVLA--GGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDL-IVVVEGADAALRVGGWISAAYVDRLH   78 (362)
Q Consensus         2 ~~~avIlA--~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v-~vv~~~~~~~~~i~~~~~~~~~~~~~   78 (362)
                      .|.+||++  |...|||.+.    .........++|||.|+++.+..++++.+ ++++++..    +.    .+    .+
T Consensus         3 ~~~~vip~k~g~~KtRL~~~----l~~~~~~~l~~~ll~~vl~~l~~~~~~~v~vvv~~~~~----~~----~~----~~   66 (211)
T 2i5e_A            3 AMRAVIPYKKAGAKSRLSPV----LSLQEREEFVELMLNQVISSLKGAGIEQVDILSPSVYG----LE----EM----TE   66 (211)
T ss_dssp             CCEEEEECCCTTTTGGGTTT----SCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTT----CS----SC----CS
T ss_pred             ceEEEEEeCCCCCccccCcc----CCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEcCcHH----HH----hh----cC
Confidence            36799999  7677888432    22223335579999999999999999998 88887432    11    11    35


Q ss_pred             eEEEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHH
Q 018019           79 VEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTA  124 (362)
Q Consensus        79 i~i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~  124 (362)
                      +.++.++  .|.+++++.+.+.+ .+.++++.||+  +....+..+++
T Consensus        67 ~~~v~~~--~gl~~sl~~a~~~~-~~~vlvi~~D~P~l~~~~i~~l~~  111 (211)
T 2i5e_A           67 ARVLLDE--KDLNEALNRYLKEA-EEPVLIVMADLPLLSPEHIKEISS  111 (211)
T ss_dssp             SEEEECC--SCHHHHHHHHHHHC-CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred             CEEEECC--CCHHHHHHHHHHhc-CCCEEEEcCCcCCCCHHHHHHHHc
Confidence            6676655  88899999998776 57899999994  66666777765

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A

Probab=97.51  E-value=0.0029  Score=61.49  Aligned_cols=191  Identities=13%  Similarity=0.116  Sum_probs=107.0

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC-CcchHHHHHHHHHhC----CC-CeEEEEccCcchHHHHHHHHHhhhcCC
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELS----NI-KDLIVVVEGADAALRVGGWISAAYVDR   76 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~-g~plI~~~l~~l~~~----gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~   76 (362)
                      +.+|+||||.||||    +...||.++||. |+++++..++++...    |. -..+|.++... .+...++++++..-.
T Consensus       128 vavvlLaGGlGTRL----G~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T-~~~T~~~f~k~~~fg  202 (528)
T 3r3i_A          128 LVVVKLNGGLGTSM----GCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNT-DEDTKKILQKYNHCR  202 (528)
T ss_dssp             EEEEEECCCBCTTT----TCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-HHHHHSSCGGGTTSS
T ss_pred             eEEEEeCCCCcccc----CCCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccch-hHHHHHHHHhcCccC
Confidence            56789999999999    788999999997 789999999998764    42 24566666443 356777776531101


Q ss_pred             cceEEEEc----------------------C-----CCCCHHH---HHHHH--HHhcC---CCcEEEEeCCcc-cCCChH
Q 018019           77 LHVEVATV----------------------P-----EDVGTAG---ALRAI--AHHLT---AKDVLVVSGDLV-SDVPPG  120 (362)
Q Consensus        77 ~~i~i~~~----------------------~-----~~~gt~~---al~~~--~~~i~---~~~~lv~~~D~i-~~~~l~  120 (362)
                      ..+.+..|                      +     .+.|.|+   +|+..  ++.+.   .+++.+.+.|.+ ...|..
T Consensus       203 ~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp~  282 (528)
T 3r3i_A          203 VKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLY  282 (528)
T ss_dssp             CCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCHH
T ss_pred             CCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCHH
Confidence            12222211                      0     1234433   33321  23332   467888889953 344544


Q ss_pred             HHHHHHHhc----CCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcE-EEEeecCcccccccccchHHH
Q 018019          121 AVTAAHRRH----DAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQF-LLHIATGAELEKDTRIRKSIL  195 (362)
Q Consensus       121 ~~l~~h~~~----~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-l~~~~~~~~~ek~~~i~~~~l  195 (362)
                       ++..+..+    ++++.+-+.+..  .|              .+.-|++... +|+. ++.+.+         ++....
T Consensus       283 -~Lg~~~~~~~~~~~d~~~kVv~Kt--~~--------------dek~Gvl~~~-dGk~~vvEyse---------ip~e~~  335 (528)
T 3r3i_A          283 -ILNHLMNPPNGKRCEFVMEVTNKT--RA--------------DVKGGTLTQY-EGKLRLVEIAQ---------VPKAHV  335 (528)
T ss_dssp             -HHHHHSSCSSSCCCSEEEEECCCC--TT--------------CCSSCEEECS-SSSCEEECTTS---------SCGGGT
T ss_pred             -HHHHHHhcccccCCcEEEEEeEcc--cc--------------CCcccEEEEE-CCeEEEEEecC---------CChhHh
Confidence             56666665    777766544321  11              1222444432 3432 222221         111111


Q ss_pred             hhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019          196 RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       196 ~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                      ..... .....+.++...+|+-+.|..+++.
T Consensus       336 ~~~~g-~~~f~~~Ntnnlw~~L~~L~~v~~~  365 (528)
T 3r3i_A          336 DEFKS-VSKFKIFNTNNLWISLAAVKRLQEQ  365 (528)
T ss_dssp             TTSSC-SSSCCCCEEEEEEEEHHHHHHHHHT
T ss_pred             hccCC-cccCCeEEEEEEEEEHHHHHHHHHh
Confidence            11111 1223567888999999999888764

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}

Probab=97.18  E-value=0.016  Score=55.80  Aligned_cols=133  Identities=15%  Similarity=0.120  Sum_probs=84.0

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeee-CCcchHHHHHHHHHhC----CC-CeEEEEccCcchHHHHHHHHHh--hhc
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQLELS----NI-KDLIVVVEGADAALRVGGWISA--AYV   74 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv-~g~plI~~~l~~l~~~----gi-~~v~vv~~~~~~~~~i~~~~~~--~~~   74 (362)
                      +.+|+||||.||||    +...||.++|+ .|+.+++..++++...    |. --.+|.++... .+...+++++  ++.
T Consensus        77 vavvlLaGGlGTRL----G~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T-~~~T~~~~~k~~~Fg  151 (484)
T 3gue_A           77 AVVLKLNGGLGTGM----GLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFST-SGETKNFLRKYPTLY  151 (484)
T ss_dssp             EEEEEEECCCCGGG----TCSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-HHHHHHHGGGCHHHH
T ss_pred             cEEEEEcCCccccc----CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcch-hHHHHHHHHhCcccC
Confidence            45788999999999    78899999999 6789999998888652    32 24566666543 3577777764  221


Q ss_pred             -CCcceEEEEc-----------------C------CCCCHHH---HHHHH--HHhcC---CCcEEEEeCCcccCCChHHH
Q 018019           75 -DRLHVEVATV-----------------P------EDVGTAG---ALRAI--AHHLT---AKDVLVVSGDLVSDVPPGAV  122 (362)
Q Consensus        75 -~~~~i~i~~~-----------------~------~~~gt~~---al~~~--~~~i~---~~~~lv~~~D~i~~~~l~~~  122 (362)
                       ....+.+..|                 .      .+.|.|+   +|+..  ++.+.   .+++.+.+.|.+...-=-.+
T Consensus       152 l~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~  231 (484)
T 3gue_A          152 EVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRL  231 (484)
T ss_dssp             TTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHH
T ss_pred             CCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHH
Confidence             1111111111                 0      0345554   33221  23222   46788889997544322447


Q ss_pred             HHHHHhcCCeEEEEEeee
Q 018019          123 TAAHRRHDAVVTAMICSV  140 (362)
Q Consensus       123 l~~h~~~~a~~t~l~~~~  140 (362)
                      +..+..+++++.+-+.+.
T Consensus       232 lG~~~~~~~d~~~kvv~K  249 (484)
T 3gue_A          232 LDYMHEKQLGFLMEVCRR  249 (484)
T ss_dssp             HHHHHHTTCSEEEEEEEC
T ss_pred             HHHHHhcCCCEEEEEEEC
Confidence            888888999988876654

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*

Probab=97.00  E-value=0.0024  Score=63.12  Aligned_cols=132  Identities=14%  Similarity=0.154  Sum_probs=84.3

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC---CcchHHHHHHHHHhC-CC-CeEEEEccCcchHHHHHHHHHhhhcCCc
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA---NRPVLSYVLEQLELS-NI-KDLIVVVEGADAALRVGGWISAAYVDRL   77 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~---g~plI~~~l~~l~~~-gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~~   77 (362)
                      +.+|+||||.||||    ....||.++|++   |++++++.++++.+. |. --.+|.++... .+...++++++-.++.
T Consensus       115 vavvllaGGlGTRL----G~~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T-~~~T~~~~~~fgl~~~  189 (630)
T 3ogz_A          115 TVFVLVAGGLGERL----GYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDT-HDRTLQLLRELQLEVP  189 (630)
T ss_dssp             EEEEEECCCEEGGG----TEEEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTT-HHHHHHHHHHTTCCCT
T ss_pred             ceEEEecCCccccc----CCCCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccc-hHHHHHHHHHhCCCcc
Confidence            45788999999999    888999999997   899999999999653 43 24566666543 3578888887322222


Q ss_pred             ceEEEEcC-----------------C-----CCCHHH---HHHH--------------------HHHhc---CCCcEEEE
Q 018019           78 HVEVATVP-----------------E-----DVGTAG---ALRA--------------------IAHHL---TAKDVLVV  109 (362)
Q Consensus        78 ~i~i~~~~-----------------~-----~~gt~~---al~~--------------------~~~~i---~~~~~lv~  109 (362)
                      .+.+..|.                 .     +.|.|+   +|+.                    .++.+   ..+++.+.
T Consensus       190 ~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~  269 (630)
T 3ogz_A          190 NLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFI  269 (630)
T ss_dssp             TEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEE
Confidence            33333210                 0     244444   2221                    22222   13677888


Q ss_pred             eCCccc-CCChHHHHHHHHhcCCeEEEEEee
Q 018019          110 SGDLVS-DVPPGAVTAAHRRHDAVVTAMICS  139 (362)
Q Consensus       110 ~~D~i~-~~~l~~~l~~h~~~~a~~t~l~~~  139 (362)
                      +.|.+. ...--.++..+..+++++.+-+.+
T Consensus       270 ~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~  300 (630)
T 3ogz_A          270 QDTNAGATITIPISLALSAEHSLDMNFTCIP  300 (630)
T ss_dssp             CTTBTTHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred             ccCCccccccCHHHhHHHHhcCCCEEEEEEE
Confidence            888632 222223678888889998877655

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=95.08  E-value=0.00027  Score=66.78  Aligned_cols=74  Identities=12%  Similarity=0.048  Sum_probs=41.5

Q ss_pred             EEEEeCCcccCC--ChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCC-cEEEEeecCc
Q 018019          106 VLVVSGDLVSDV--PPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTK-QFLLHIATGA  182 (362)
Q Consensus       106 ~lv~~~D~i~~~--~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~-~~l~~~~~~~  182 (362)
                      =|+-.+|.++.+  +|.++++.|.     +|+..  .+                 ++..+++..+++.+ ..+ .|.+  
T Consensus        13 ~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g--~~-----------------~~~~~Gv~~ld~a~~g~I-~F~e--   65 (374)
T 2iu8_A           13 GLVPRGSHMSQSTYSLEQLADFLK-----VEFQG--NG-----------------ATLLSGVEEIEEAKTAHI-TFLD--   65 (374)
T ss_dssp             --------CCSCCEEHHHHHHHTT-----CEEES--CT-----------------TCEECEECCTTTCCTTEE-EECC--
T ss_pred             CcccCccccccCcCcHHHHHHhhC-----CEEEC--CC-----------------cceEEEEeccccCCCCeE-EEEe--
Confidence            467779999987  8999999885     24432  11                 24567888887532 344 5553  


Q ss_pred             ccccccccchHHHhhcCceeeecCceeceEEeeCHHHHH
Q 018019          183 ELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQ  221 (362)
Q Consensus       183 ~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~  221 (362)
                         |+...            ....+.++|+|+|+++++.
T Consensus        66 ---kPk~~------------~~~~~~~aGiyI~~~~~l~   89 (374)
T 2iu8_A           66 ---NEKYA------------KHLKSSEAGAIIISRTQFQ   89 (374)
T ss_dssp             ---SSSTH------------HHHHTCCCSEEEEEHHHHH
T ss_pred             ---Cchhh------------hhhhcCCcEEEEeChhHhh
Confidence               32210            0125678999999999874

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=93.31  E-value=1.1  Score=38.58  Aligned_cols=99  Identities=8%  Similarity=0.038  Sum_probs=67.4

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcC--------CCCCHHHHHHH
Q 018019           28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP--------EDVGTAGALRA   96 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~--------~~~gt~~al~~   96 (362)
                      .+|.-|+ ..|..+|+.+.+....  +|+|+-....  +...+.+.++.. ...+.++..+        ...|.+.+.-.
T Consensus         6 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~--d~t~~~~~~~~~-~~~i~~i~~~~~~~~~~~~n~G~~~a~N~   82 (255)
T 1qg8_A            6 IMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSN--EETLNVIRPFLN-DNRVRFYQSDISGVKERTEKTRYAALINQ   82 (255)
T ss_dssp             EEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCC--HHHHHHHGGGGG-STTEEEEECCCCSHHHHHSSCHHHHHHHH
T ss_pred             EEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCC--chHHHHHHHHhh-cCCEEEEecccccccccccccCHHHHHHH
Confidence            4566665 7899999999876543  5666654332  344555554422 3467777666        56788888888


Q ss_pred             HHHhcCCCcEEEEeCCcccC-CChHHHHHHHHhc
Q 018019           97 IAHHLTAKDVLVVSGDLVSD-VPPGAVTAAHRRH  129 (362)
Q Consensus        97 ~~~~i~~~~~lv~~~D~i~~-~~l~~~l~~h~~~  129 (362)
                      +.+....+.++++.+|.+.. .-+..+++.+.+.
T Consensus        83 gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~  116 (255)
T 1qg8_A           83 AIEMAEGEYITYATDDNIYMPDRLLKMVRELDTH  116 (255)
T ss_dssp             HHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred             HHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhC
Confidence            88887777889999996544 4478888877654

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=93.08  E-value=0.61  Score=39.82  Aligned_cols=106  Identities=11%  Similarity=0.070  Sum_probs=67.2

Q ss_pred             eeeeeCCc-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCC
Q 018019           27 ALLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTA  103 (362)
Q Consensus        27 ~llpv~g~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~  103 (362)
                      -.+|.-|+ ..|..+|+.+.+....  +|+|+-+...  +...+.++++......+.++. .+..|.+.+.-.+++....
T Consensus         9 ViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~--d~t~~~~~~~~~~~~~i~~i~-~~n~G~~~a~N~g~~~a~g   85 (240)
T 3bcv_A            9 VIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESP--DNCPKICDDYAAQYPNIKVIH-KKNAGLGMACNSGLDVATG   85 (240)
T ss_dssp             EEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCS--SSHHHHHHHHHHHCSSEEEEE-CCCCCHHHHHHHHHHHCCS
T ss_pred             EEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCC--cCHHHHHHHHHhhCCCEEEEE-CCCCChHHHHHHHHHHcCC
Confidence            34676665 7999999999876543  5666644221  122222322211112466665 4568999999888888877


Q ss_pred             CcEEEEeCCcccCC-ChHHHHHHHHhcCCeEEE
Q 018019          104 KDVLVVSGDLVSDV-PPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus       104 ~~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~t~  135 (362)
                      ++++++.+|.+... -+..+++...+.+.++.+
T Consensus        86 ~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~  118 (240)
T 3bcv_A           86 EYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVF  118 (240)
T ss_dssp             SEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEE
T ss_pred             CEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEE
Confidence            78899999965544 478888877766666543

>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}

Probab=90.03  E-value=0.83  Score=39.86  Aligned_cols=87  Identities=13%  Similarity=0.105  Sum_probs=58.2

Q ss_pred             cchHHHHHHHHHhCCCCeEEEEccCcchHHHH--HHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhc---CCCcEEE
Q 018019           34 RPVLSYVLEQLELSNIKDLIVVVEGADAALRV--GGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL---TAKDVLV  108 (362)
Q Consensus        34 ~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i--~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i---~~~~~lv  108 (362)
                      ++|+.++++.+..++...++++++.... ..+  ..+.    .  .++.+.. ....|.+.+|+.+...+   ..+.+++
T Consensus        37 ~~ll~~tl~~~~~~~~~~vvvvt~~~~~-~~~~~~~~~----~--~~~~~~~-q~~~gLg~rl~~a~~~~~~~~~~~vli  108 (242)
T 3cgx_A           37 RHFVQDMLQGLARLHADLHICYVPGDAD-LPEKFKAWL----G--PQHMFAA-QQGLDLGERMKHAMQKAFDDGYDRVVL  108 (242)
T ss_dssp             HHHHHHHHHHHTTSSSEEEEEECCCCTT-HHHHHHHHH----C--TTSEEEE-CCSSSHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCCchh-hhhhhhhhc----c--CCcEEec-CCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            6899999999999888767666654321 111  2222    1  2343333 34578889998887654   2357999


Q ss_pred             EeCC--cccCCChHHHHHHHHh
Q 018019          109 VSGD--LVSDVPPGAVTAAHRR  128 (362)
Q Consensus       109 ~~~D--~i~~~~l~~~l~~h~~  128 (362)
                      +.+|  .+...++..+++....
T Consensus       109 igaD~P~L~~~~l~~a~~~l~~  130 (242)
T 3cgx_A          109 MGSDIPDYPCELVQKALNDLQH  130 (242)
T ss_dssp             ECSSCTTCCHHHHHHHHHHTTT
T ss_pred             EcCCCCCCCHHHHHHHHHHhcc
Confidence            9999  4777888888876543

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=89.92  E-value=3.4  Score=39.44  Aligned_cols=103  Identities=10%  Similarity=0.085  Sum_probs=68.7

Q ss_pred             eeeeCCc--chHHHHHHHHHhCCC----CeEEEEccCcc---hHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHH
Q 018019           28 LLPVANR--PVLSYVLEQLELSNI----KDLIVVVEGAD---AALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIA   98 (362)
Q Consensus        28 llpv~g~--plI~~~l~~l~~~gi----~~v~vv~~~~~---~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~   98 (362)
                      .+|.-|.  ..|..+|+.+.+...    .+|+||-....   ..+.+.++....   ...+.++..+...|-+.+...++
T Consensus        34 IIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~---~~~v~vi~~~~n~G~~~a~N~g~  110 (472)
T 1xhb_A           34 VIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKL---KVPVHVIRMEQRSGLIRARLKGA  110 (472)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSS---SSCEEEEECSSCCCHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHC---CCcEEEEECCCCCChHHHHHHHH
Confidence            4677775  588899999977643    26777754322   112233333211   11477777777789999998888


Q ss_pred             HhcCCCcEEEEeCCccc-CCChHHHHHHHHhcCCeE
Q 018019           99 HHLTAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVV  133 (362)
Q Consensus        99 ~~i~~~~~lv~~~D~i~-~~~l~~~l~~h~~~~a~~  133 (362)
                      +....+.++++.+|.+. +.-+..+++...+....+
T Consensus       111 ~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~  146 (472)
T 1xhb_A          111 AVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTV  146 (472)
T ss_dssp             HHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred             HhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEE
Confidence            88777788999999644 555888888887655443

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=86.80  E-value=3.9  Score=40.28  Aligned_cols=103  Identities=10%  Similarity=0.001  Sum_probs=66.6

Q ss_pred             eeeeCCc--chHHHHHHHHHhCCC-C---eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhc
Q 018019           28 LLPVANR--PVLSYVLEQLELSNI-K---DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL  101 (362)
Q Consensus        28 llpv~g~--plI~~~l~~l~~~gi-~---~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i  101 (362)
                      .+|+-|.  ..|..+|+.+.+... .   +|+||-..... ..+.+.++++......+.++..+...|-+.+...+++..
T Consensus       117 IIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D-~tl~~~l~~~~~~~~~v~vi~~~~n~G~~~A~N~G~~~A  195 (570)
T 2d7i_A          117 IIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR-EHLKKPLEDYMALFPSVRILRTKKREGLIRTRMLGASVA  195 (570)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCC-GGGTHHHHHHHTTSTTEEEEECSSCCCHHHHHHHHHHHC
T ss_pred             EEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCc-HHHHHHHHHHHHhCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3677776  488888888866433 2   67777543211 121233332211113577777677789999998888887


Q ss_pred             CCCcEEEEeCCccc-CCChHHHHHHHHhcCC
Q 018019          102 TAKDVLVVSGDLVS-DVPPGAVTAAHRRHDA  131 (362)
Q Consensus       102 ~~~~~lv~~~D~i~-~~~l~~~l~~h~~~~a  131 (362)
                      ..+.++++.+|.+. +.-|..+++...+...
T Consensus       196 ~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~  226 (570)
T 2d7i_A          196 TGDVITFLDSHCEANVNWLPPLLDRIARNRK  226 (570)
T ss_dssp             CSSEEEECCSSEEECTTCSHHHHHHHHHCTT
T ss_pred             CCCEEEEEcCCccccccHHHHHHHHHHhCCC
Confidence            76778899999644 4558888888766543

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=85.18  E-value=11  Score=37.36  Aligned_cols=99  Identities=11%  Similarity=0.107  Sum_probs=63.1

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019           28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~  104 (362)
                      ++|.-|. ..|..+|+++.+....  +|+|+-+...  +...+.+.++......+.++. ....|.+.++..+++....+
T Consensus       380 ii~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~--d~t~~~~~~~~~~~~~i~~~~-~~n~G~~~a~n~g~~~a~g~  456 (625)
T 2z86_A          380 YIPAYNCSKYIVRCVESALNQTITDLEVCICDDGST--DDTLRILQEHYANHPRVRFIS-QKNKGIGSASNTAVRLCRGF  456 (625)
T ss_dssp             EEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCS--SSHHHHHHHHHTTCTTEEEEE-ECCCCHHHHHHHHHHHCCSS
T ss_pred             EEeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCC--hhHHHHHHHHHhhCCcEEEEe-CCCCCHHHHHHHHHHhcCCC
Confidence            4566665 8999999999776433  5666644221  122333433221223466664 45689999998888887667


Q ss_pred             cEEEEeCCcccC-CChHHHHHHHHhc
Q 018019          105 DVLVVSGDLVSD-VPPGAVTAAHRRH  129 (362)
Q Consensus       105 ~~lv~~~D~i~~-~~l~~~l~~h~~~  129 (362)
                      .++++.+|.+.. .-+..+++.+.+.
T Consensus       457 ~i~~ld~D~~~~~~~l~~~~~~~~~~  482 (625)
T 2z86_A          457 YIGQLDSDDFLEPDAVELCLDEFRKD  482 (625)
T ss_dssp             EEEECCTTCEECTTHHHHHHHHHHHC
T ss_pred             EEEEECCCcccChhHHHHHHHHHHhC
Confidence            888999996544 4477787776543

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=81.41  E-value=7.5  Score=37.38  Aligned_cols=100  Identities=11%  Similarity=0.029  Sum_probs=67.6

Q ss_pred             eeeeCCc-c-hHHHHHHHHHhCCCC----eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhc
Q 018019           28 LLPVANR-P-VLSYVLEQLELSNIK----DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHL  101 (362)
Q Consensus        28 llpv~g~-p-lI~~~l~~l~~~gi~----~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i  101 (362)
                      .+|+-|. . .|..+|+.+.+....    +|+||-.... .+.+...+..    ...+.++..+...|-+.|...+++..
T Consensus        71 IIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~-D~t~~~~~~~----~~~v~vi~~~~n~G~~~A~N~G~~~A  145 (501)
T 2ffu_A           71 VITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSN-DPEDGALLGK----IEKVRVLRNDRREGLMRSRVRGADAA  145 (501)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCS-CTHHHHGGGG----BTTEEEEECSSCCHHHHHHHHHHHHC
T ss_pred             EEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCC-chHHHHHHhc----CCCEEEEECCCCcCHHHHHHHHHHhc
Confidence            4677786 4 799999988664332    6777754322 1233333322    23577776667789889998888888


Q ss_pred             CCCcEEEEeCCc-ccCCChHHHHHHHHhcCCe
Q 018019          102 TAKDVLVVSGDL-VSDVPPGAVTAAHRRHDAV  132 (362)
Q Consensus       102 ~~~~~lv~~~D~-i~~~~l~~~l~~h~~~~a~  132 (362)
                      ..+.++++.+|. +.+.-|..+++...+....
T Consensus       146 ~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~  177 (501)
T 2ffu_A          146 QAKVLTFLDSHCECNEHWLEPLLERVAEDRTR  177 (501)
T ss_dssp             CSSEEEECCSSEEECTTCHHHHHHHHHHCTTE
T ss_pred             CCCEEEEECCCcccCccHHHHHHHHHHhCCCe
Confidence            767788899995 4455689999888776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d1mc3a_	291	c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}	2e-15
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	1e-14
d1yp2a2	307	c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr	3e-13
d1fxoa_	292	c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa	4e-13
d1tzfa_	259	c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf	5e-12
d1jyka_	229	c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer	7e-10
d2dpwa1	231	c.68.1.19 (A:1-231) Uncharacterized protein TTHA01	3e-08
d2oi6a2	248	c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate	3e-08
d1g97a2	250	c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate	8e-08
d1i52a_	225	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	1e-06
d1vpaa_	221	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	4e-06
d1w55a1	205	c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme,	1e-05
d1vgwa_	226	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	2e-05
d1w77a1	226	c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-	4e-05
d2cu2a2	268	c.68.1.20 (A:1-268) Putative mannose-1-phosphate g	8e-05
d1e5ka_	188	c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro	0.003
d1vica_	255	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	0.003
d1vh1a_	246	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	0.003

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

 Score = 73.6 bits (181), Expect = 2e-15
 Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + ++LAGG+  +L P+ ++ V K LLP+ ++P++ Y L  L L+ I++++++    D   
Sbjct: 3   KGIILAGGSGTRLHPI-TRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 61

Query: 64  --RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVV-SGDLVSDVPPG 120
             R+ G  S      + +E A  P   G A A       L  +   +V   ++       
Sbjct: 62  FQRLLGDGSE---FGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFS 118

Query: 121 AVTAAHRRHDAVVTAMICSVPVS 143
                         A +    V 
Sbjct: 119 PKLRHVAARTE--GATVFGYQVM 139

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 71.1 bits (174), Expect = 1e-14
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + +VLAGG+  +L P+ ++ V K LLP+ ++P++ Y L  L L+ I+D++++    D  L
Sbjct: 5   KGIVLAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63

Query: 64  --RVGGWISAAYVDRLHVEVATVPEDV--GTAGALRAIAHHLTAKDVLVVSGD 112
              + G  S     +  V  +   ++   G A A       +    V +V GD
Sbjct: 64  YRDLLGDGS-----QFGVRFSYRVQEEPRGIADAFIVGKDFIGDSKVALVLGD 111

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 67.3 bits (163), Expect = 3e-13
 Identities = 44/261 (16%), Positives = 94/261 (36%), Gaps = 35/261 (13%)

Query: 6   VVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLELSNIKDLIVVVEGADAALR 64
           ++L GG   +L PL +K+  K  +P+  N  ++   +     SNI  + V+ +   A+L 
Sbjct: 15  IILGGGAGTRLYPL-TKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 73

Query: 65  VGGWISAA----------YVDRLHVEVATVPEDV--GTAGALRAIAHHLTA---KDVLVV 109
                + A          +V+ L  + +    D   GTA A+R            + L++
Sbjct: 74  RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLIL 133

Query: 110 SGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMD 169
           +GD +  +       AHR  DA +T     +                 K+   + ++ +D
Sbjct: 134 AGDHLYRMDYEKFIQAHRETDADITVAALPMDE---------------KRATAFGLMKID 178

Query: 170 PTKQFLLHI--ATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL-DQ 226
              + +       G +L+        +     +      +    +Y  ++ V+  +L D+
Sbjct: 179 EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDK 238

Query: 227 KDKFQSLKQDVLPYLVRSQLK 247
                    +V+P      ++
Sbjct: 239 FPGANDFGSEVIPGATSLGMR 259

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 66.7 bits (163), Expect = 4e-13
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 28/172 (16%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
           + ++LAGG+  +L P  +  + K LLPV ++P++ Y L  L L+ I++++++    D   
Sbjct: 3   KGIILAGGSGTRLHPA-TLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 61

Query: 64  --RVGGWISAAYVDRLHVEVATVPEDV--GTAGALRAIAHHLTAKD-VLVVSGDLVSDVP 118
             ++ G  S        +++    +    G A A       +      LV+  +L     
Sbjct: 62  FQQLLGDGS-----NWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHD 116

Query: 119 PGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDP 170
              +  +  +     +  + +  V                 P RY ++  D 
Sbjct: 117 FHELLGSASQRQTGAS--VFAYHV---------------LDPERYGVVEFDQ 151

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

 Score = 63.2 bits (152), Expect = 5e-12
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKD 51
          M  + V+LAGG   +L    +   PK ++ +  +P+L ++++   +  IKD
Sbjct: 1  MASKAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKD 50

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 56.2 bits (134), Expect = 7e-10
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIK 50
          +  + ++LA G   +L PL ++  PKAL+ V  +P++ Y +E L+   I 
Sbjct: 2  IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGIN 50

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

 Score = 51.4 bits (122), Expect = 3e-08
 Identities = 36/231 (15%), Positives = 67/231 (29%), Gaps = 25/231 (10%)

Query: 1   MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGAD 60
           M    +VLAGG              KAL+P   RP++ +VLE L  + +  + V      
Sbjct: 1   MRPSAIVLAGGKEAWAERF--GVGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGL 58

Query: 61  AALRVGGWIS--------AAYVDRLHVEVATVPEDVG--TAGALRAIAHHLTAKD--VLV 108
                                ++ +   V     D+   T  A+R +            +
Sbjct: 59  VPAPALTLPDRGGLLENLEQALEHVEGRVLVATGDIPHLTEEAVRFVLDKAPEAALVYPI 118

Query: 109 VSGDLVSDVPPGAVTAAHRRHDAVVTA----MICSVPVSGLSEAGSSGAKDKTKKPGRYN 164
           V  + V    P       R  +   T     ++                  + +      
Sbjct: 119 VPKEAVEARFPRTKRTYARLREGTFTGGNLLLLDKSLFRKALPLARRVVALRKRPLALAR 178

Query: 165 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAF 215
           ++G D   + LL   + AE+E          + +  ++ RA +        
Sbjct: 179 LVGWDVLLKLLLGRLSLAEVEAR-------AQRILGVEARALVTPYPEVGV 222

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 11/135 (8%)

Query: 4   QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
            VV+LA G   ++      ++PK L  +A + ++ +V++         + +V        
Sbjct: 4   SVVILAAGKGTRMYS----DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVY------- 52

Query: 64  RVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVT 123
             GG +    +   ++      E +GT  A++  A      + +++    V  +    + 
Sbjct: 53  GHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQ 112

Query: 124 AAHRRHDAVVTAMIC 138
                       ++ 
Sbjct: 113 RLRDAKPQGGIGLLT 127

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 50.5 bits (119), Expect = 8e-08
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIV 54
          ++LA G   ++      ++PK L  VA   +L +V   +     +  + 
Sbjct: 5  IILAAGKGTRMKS----DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVT 49

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          +D   VV A G  +++      E PK  L + N+ +L + +  L        +V+ 
Sbjct: 2  LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIA 53

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++LA G  +++    S+ VPK  L +  R +  Y L     S   D +V+V
Sbjct: 7  ILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIV 53

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 2  DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLE 45
          +  +++LA G S +     + +V K  L + N P+  Y  + L 
Sbjct: 1  EMSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLS 40

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          ++ A G   +       + PK  + + ++ VL +VL   E     DL VVV
Sbjct: 7  LIPAAGIGVRF----GADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVV 53

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 5  VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIV 54
          V++LAGG  K++       +PK  +P+  +P+  Y             IV
Sbjct: 7  VILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIV 52

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 1  MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQL 44
          M    +V+AGG  ++L PL  ++ PK  LP+   + +L   LE+L
Sbjct: 1  MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERL 45

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 6  VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQ 43
          VVLAGG ++++       V K LL +  +P+  +V + 
Sbjct: 7  VVLAGGKARRM-----GGVDKGLLELNGKPLWQHVADA 39

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 3  FQVVVLAGGTSKKLVPLVSKEVP-KALLPVANRPVLSYVLEQLELSNIKDLIVV 55
          F V++ A   S +L        P K L  +  +P++ +V E+   S    +I+ 
Sbjct: 2  FTVIIPARFASSRL--------PGKPLADIKGKPMIQHVFEKALQSGASRVIIA 47

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 21 SKEVP-KALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
          S  +P K L+ +  +P++ +VLE+   S  + +IV  
Sbjct: 12 STRLPGKPLVDINGKPMIVHVLERARESGAERIIVAT 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	100.0
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	100.0
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	100.0
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	99.97
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	99.95
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.94
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.92
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.87
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	99.81
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	99.6
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.55
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.53
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.49
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.43
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	99.39
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.35
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	99.33
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.26
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.26
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	99.12
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	99.08
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	98.68
d1jv1a_	501	UDP-N-acetylglucosamine pyrophosphorylase {Human (	97.55
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	90.29
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	88.64
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	84.74

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=6.8e-35  Score=265.54  Aligned_cols=235  Identities=17%  Similarity=0.270  Sum_probs=183.8

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      +++|||||||.||||+|+ |..+||||+||+|+|||+|+|++|..+|+++|+|++.+.. .+.+.++++....-...+.+
T Consensus         1 k~KavILAgG~GtRl~pl-T~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~-~~~i~~~~~~~~~~g~~I~y   78 (292)
T d1fxoa_           1 KRKGIILAGGSGTRLHPA-TLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQD-TPRFQQLLGDGSNWGLDLQY   78 (292)
T ss_dssp             CEEEEEECCCCCTTTTTH-HHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEEE
T ss_pred             CcEEEEECCCCCCcCChh-hcCCCcccCEECCEehHHHHHHHHHHCCCCEEEEEeCcCC-HHHHHHHhccccccCeEEEE
Confidence            468999999999999999 9999999999999999999999999999999998887543 35777777653211245666


Q ss_pred             EEcCCCCCHHHHHHHHHHhcCCCc-EEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCC
Q 018019           82 ATVPEDVGTAGALRAIAHHLTAKD-VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~~-~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (362)
                      +.++++.|||+|+..+.+++.+++ ++++++|++++.++.++++.|.++++.+|+++.+++                 +|
T Consensus        79 ~~q~~~~Gta~ai~~a~~~i~~~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~-----------------~p  141 (292)
T d1fxoa_          79 AVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVL-----------------DP  141 (292)
T ss_dssp             EECSSCCCGGGHHHHTHHHHTTSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECS-----------------CG
T ss_pred             ccCCCCCcHHHHHHhhhhhcCCCceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECC-----------------CH
Confidence            778889999999999999998665 566777899999999999999999999999887653                 26


Q ss_pred             CcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcC-cc--cccchhhh
Q 018019          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQK-DK--FQSLKQDV  237 (362)
Q Consensus       161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~-~~--~~s~~~d~  237 (362)
                      ++||++.+|+++++ ..+.     |||.             .+.++++.+|+|+|+++++..+ +.- +.  -...-.|+
T Consensus       142 ~~yGV~~~d~~~ki-~~~~-----EKP~-------------~p~Snla~~G~Y~f~~~~~~~~-~~l~~s~rgE~eitD~  201 (292)
T d1fxoa_         142 ERYGVVEFDQGGKA-ISLE-----EKPL-------------EPKSNYAVTGLYFYDQQVVDIA-RDLKPSPRGELEITDV  201 (292)
T ss_dssp             GGSEEEEECTTSCE-EEEE-----ESCS-------------SCSSSEEEEEEEEECTTHHHHH-HHCCCCTTSSCCHHHH
T ss_pred             HHCeEEEEcCCCCE-eEEE-----ECCC-------------CCCCCcEEEEEEEEChHHHHHH-HhCCCCCCCchhhHHH
Confidence            78999999998886 4666     4543             3467999999999999999644 432 11  11122456


Q ss_pred             hhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeC
Q 018019          238 LPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLN  317 (362)
Q Consensus       238 ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin  317 (362)
                      ++.+++++                                                       ++.++.+.+..+|..+.
T Consensus       202 ~~~~l~~~-------------------------------------------------------~~~~~~~~~~~~W~D~G  226 (292)
T d1fxoa_         202 NRAYLERG-------------------------------------------------------QLSVEIMGRGYAWLDTG  226 (292)
T ss_dssp             HHHHHHTT-------------------------------------------------------CEEEEECCTTSEEEECC
T ss_pred             HHHHHHcC-------------------------------------------------------CeEEEEeCCCCEEEeCC
Confidence            66655432                                                       22344444455799999


Q ss_pred             CHHHHHHHhHHHh
Q 018019          318 SIQAFMDINRDVI  330 (362)
Q Consensus       318 ~~~~Y~~~n~~~l  330 (362)
                      |+.+|.++|+.+.
T Consensus       227 t~~~l~~a~~~v~  239 (292)
T d1fxoa_         227 THDSLLEAGQFIA  239 (292)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998775

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=2.9e-33  Score=257.96  Aligned_cols=256  Identities=18%  Similarity=0.280  Sum_probs=186.1

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCc-chHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcC------
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANR-PVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVD------   75 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~-plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~------   75 (362)
                      +.|||||||.||||+|| |..+||||+||+|+ |||+|+|++|.++|+++|+|++++..  +.+.+|+.+.+..      
T Consensus        12 ~~AIILAaG~GtRL~pl-T~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~--~~i~~~l~~~~~~~l~~~~   88 (307)
T d1yp2a2          12 VLGIILGGGAGTRLYPL-TKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS--ASLNRHLSRAYASNMGGYK   88 (307)
T ss_dssp             EEEEEC------CCTTT-TTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCC--HHHHHHHHHHCC-------
T ss_pred             eEEEEECCCCcccCChh-hcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEecccc--ccchhhhhccccccccccc
Confidence            67999999999999999 99999999999986 99999999999999999999999774  4777777653321      


Q ss_pred             CcceEEEEcC--------CCCCHHHHHHHHHHhcCC---CcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCC
Q 018019           76 RLHVEVATVP--------EDVGTAGALRAIAHHLTA---KDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSG  144 (362)
Q Consensus        76 ~~~i~i~~~~--------~~~gt~~al~~~~~~i~~---~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~  144 (362)
                      ..++..+...        ...|++++++.+...+.+   ++|++++||++++.++..+++.|+.+++.+++++...+.. 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (307)
T d1yp2a2          89 NEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEK-  167 (307)
T ss_dssp             -CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHH-
T ss_pred             ccccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccc-
Confidence            1233333221        136999999999888753   5799999999999999999999999999988887665421 


Q ss_pred             CcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCccccccc--ccchHHHhhc-CceeeecCceeceEEeeCHHHHH
Q 018019          145 LSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDT--RIRKSILRAV-GQMDIRADLMDAHMYAFNRSVLQ  221 (362)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~--~i~~~~l~~~-~~~~~~~~l~~~giYi~s~~vl~  221 (362)
                                    ....|+++.+|+++++ ..+.++++.+...  ......+... ........+.++|+|+|++++|.
T Consensus       168 --------------~~~~~gvv~~d~~~~v-~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~  232 (307)
T d1yp2a2         168 --------------RATAFGLMKIDEEGRI-IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVML  232 (307)
T ss_dssp             --------------HHTTSEEEEECTTSBE-EEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHH
T ss_pred             --------------cccccceEEECCCCcE-EEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHH
Confidence                          1457899999998875 5666543322110  0111001000 00122346889999999999998


Q ss_pred             HHHhcC-cccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCcee
Q 018019          222 EVLDQK-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTH  300 (362)
Q Consensus       222 ~~~~~~-~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (362)
                      .++.+. ....++..|+||.++.++                                                      .
T Consensus       233 ~~~~~~~~~~~~~~~d~i~~li~~g------------------------------------------------------~  258 (307)
T d1yp2a2         233 NLLRDKFPGANDFGSEVIPGATSLG------------------------------------------------------M  258 (307)
T ss_dssp             HHHHTTCTTCCCTTTTHHHHHHHTT------------------------------------------------------C
T ss_pred             HHhhhccccccchHHHHHHHHHHCC------------------------------------------------------C
Confidence            877643 345667889999988653                                                      3


Q ss_pred             eEEEEEecCCceEEEeCCHHHHHHHhHHHhhhh
Q 018019          301 KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA  333 (362)
Q Consensus       301 ~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~~~  333 (362)
                      ++++|.+  +|||..|+|+.+|+++|+++|+..
T Consensus       259 ~v~~~~~--~g~W~Digt~~~~~~a~~~ll~~~  289 (307)
T d1yp2a2         259 RVQAYLY--DGYWEDIGTIEAFYNANLGITKKP  289 (307)
T ss_dssp             CEEEEEC--CSCCEECSSHHHHHHHHHGGGCSS
T ss_pred             cEEEEEe--CCeEEECcCHHHHHHHHHHHhcCC
Confidence            5688888  889999999999999999999854

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-33  Score=256.23  Aligned_cols=183  Identities=19%  Similarity=0.323  Sum_probs=151.2

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      |+|||||||.||||+|+ |..+||||+||+|+|||+|+|++|..+|+++|+|++++.. .+.+++++++...-...+.++
T Consensus         2 MkaiIlagG~GtRl~p~-t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~-~~~~~~~~~~g~~~gi~I~y~   79 (291)
T d1mc3a_           2 MKGIILAGGSGTRLHPI-TRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPED-KGYFQRLLGDGSEFGIQLEYA   79 (291)
T ss_dssp             CEEEEECCCCCGGGHHH-HTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEEEE
T ss_pred             ccEEEECCcCccccchh-hcCCCccccEECCEehHHHHHHHHHHcCCCEEEEEeCccc-HHHHHHHhCchHhhCcEEEEE
Confidence            78999999999999999 9999999999999999999999999999999999998654 245666665321112356667


Q ss_pred             EcCCCCCHHHHHHHHHHhcCCCcEE-EEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCC
Q 018019           83 TVPEDVGTAGALRAIAHHLTAKDVL-VVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPG  161 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~~~~~l-v~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (362)
                      .++.+.|||+|+..+.+++.+++++ |+++|+++..++..+++.|.++.+++|+++.++.                 +|.
T Consensus        80 ~Q~~plGta~Ai~~a~~fi~~~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~-----------------dP~  142 (291)
T d1mc3a_          80 EQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVM-----------------DPE  142 (291)
T ss_dssp             ECSSCCCSTHHHHHTHHHHTTSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECS-----------------CCS
T ss_pred             ECCCCCchHHHHHHHHHHhCCCCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECC-----------------Ccc
Confidence            7888999999999999999766654 5555588999999999999998888999888764                 377


Q ss_pred             cceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHH
Q 018019          162 RYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (362)
Q Consensus       162 ~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~  223 (362)
                      +||++.+|++|++ ..+.     ||+.             .+.++++.+|+|+|++++++.+
T Consensus       143 ~yGVve~d~~g~i-~~i~-----EKP~-------------~p~Sn~a~~GiY~f~~~v~~~~  185 (291)
T d1mc3a_         143 RFGVVEFDDNFRA-ISLE-----EKPK-------------QPKSNWAVTGLYFYDSKVVEYA  185 (291)
T ss_dssp             SSBBCEEETTEEE-EECC-----BSCS-------------SCSCSEEEEEEEECCTHHHHHH
T ss_pred             cCCCceeccCcce-eEEE-----ECCC-------------CCCCCeEEEEEEEeChHHHHHH
Confidence            8999999998875 5676     4543             2457999999999999999655

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.97  E-value=4.9e-30  Score=235.24  Aligned_cols=238  Identities=14%  Similarity=0.242  Sum_probs=178.3

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      .|+|||||||.||||+|+ |..+||||+||+|+|||+|+++++..+|+++++|++++.. .+.+.+++.....-...+.+
T Consensus         3 ~MkavIlagG~GtRl~p~-t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~-~~~~~~~~~~~~~~~~~i~~   80 (295)
T d1lvwa_           3 HMKGIVLAGGSGTRLYPI-TRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRD-LPLYRDLLGDGSQFGVRFSY   80 (295)
T ss_dssp             SCEEEEECCCCCSTTTTT-TTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTSEEEE
T ss_pred             CcEEEEECCCCcccCCcc-cCCCCcccCeECCEEHHHHHHHHHHHCCCCeEEEEeCccc-HHHHHHHhccchhcCCEEEE
Confidence            589999999999999999 8999999999999999999999999999999999998664 24666666542111234667


Q ss_pred             EEcCCCCCHHHHHHHHHHhcCCCc-EEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCC
Q 018019           82 ATVPEDVGTAGALRAIAHHLTAKD-VLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKP  160 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~~~-~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (362)
                      +.++.+.|||+|+..+.+++.+++ ++++++|++...++..++..|.+.+.++|+++.+..                 .+
T Consensus        81 v~e~~~~gta~Al~~a~~~l~~~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~-----------------~~  143 (295)
T d1lvwa_          81 RVQEEPRGIADAFIVGKDFIGDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR-----------------DP  143 (295)
T ss_dssp             EECSSCCCGGGHHHHTHHHHTTSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS-----------------CC
T ss_pred             EECCCCCCHHHHHHHHHHHcCCCCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcC-----------------CC
Confidence            888889999999999999997654 566677788899999999999999999998876643                 26


Q ss_pred             CcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhcCcccccchhhhhhH
Q 018019          161 GRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPY  240 (362)
Q Consensus       161 ~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~~~~~~s~~~d~ip~  240 (362)
                      .+||++.+++++++ ..+.+     |+.             ...++++++|+|++++.+|..+ .+.. .....+..++.
T Consensus       144 ~~yG~i~~~~~~~v-~~~~E-----Kp~-------------~~~s~~~~~Giy~~n~~if~~~-~~~~-~~~~~e~~~~~  202 (295)
T d1lvwa_         144 RPFGVVEFDSEGRV-ISIEE-----KPS-------------RPKSNYVVPGLYFYDNQVVEIA-RRIE-PSDRGELEITS  202 (295)
T ss_dssp             TTSEEEEECTTSBE-EEEEE-----SCS-------------SCSCSEECCSEEEECTTHHHHH-HHCC-CCTTSCCCHHH
T ss_pred             ccccEEEECCCCcE-EEEee-----ccc-------------CcccceeecceEEECHHHHHHH-HhcC-CCcCCCeeccc
Confidence            68999999988875 56664     332             1235789999999999999644 3221 12223333444


Q ss_pred             HHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCceeeEEEEEecCCceEEEeCCHH
Q 018019          241 LVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ  320 (362)
Q Consensus       241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~rin~~~  320 (362)
                      +...-...                                                 ...+++.+  ..+++|.-+.|+.
T Consensus       203 ~~~~~~~~-------------------------------------------------~~~~~~~~--~~~~~w~Digt~~  231 (295)
T d1lvwa_         203 VNEEYLRM-------------------------------------------------GKLRVELM--GRGMAWLDTGTHD  231 (295)
T ss_dssp             HHHHHHHT-------------------------------------------------TCEEEEEE--CTTCEECCCSSHH
T ss_pred             hHHHHHHh-------------------------------------------------CCCeEEEc--CCCcEEeCCCChH
Confidence            33322211                                                 01333443  4478899999999


Q ss_pred             HHHHHhHHHh
Q 018019          321 AFMDINRDVI  330 (362)
Q Consensus       321 ~Y~~~n~~~l  330 (362)
                      +|.+++.++-
T Consensus       232 ~l~~~s~~i~  241 (295)
T d1lvwa_         232 GLLEASSFIE  241 (295)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998763

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=1.2e-26  Score=207.15  Aligned_cols=228  Identities=18%  Similarity=0.305  Sum_probs=165.8

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhc------
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYV------   74 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~------   74 (362)
                      |..+|||||||.||||+|+ |...||||+||+|+|||+|+|+.|.++|+++|+|++++.  .+++.+++...+.      
T Consensus         1 ~~~kAiILAAG~GtRl~~l-T~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~--~~~i~~~~~~~~~~~~~i~   77 (259)
T d1tzfa_           1 MASKAVILAGGLGTRLSEE-TIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYK--GYVIKEYFANYFLHMSDVT   77 (259)
T ss_dssp             CCCEEEEEECSCC---------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTT--HHHHHHHHHTHHHHHSCEE
T ss_pred             CCceEEEECCCccccCChh-hCCCCccceEECCEEHHHHHHHHHHHcCCCeeeeccchh--HHHHHHHHhcchhcccccc
Confidence            8899999999999999999 999999999999999999999999999999999999987  4688888764210      


Q ss_pred             ---------------CCcceEEEEcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEe
Q 018019           75 ---------------DRLHVEVATVPEDVGTAGALRAIAHHLT-AKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMIC  138 (362)
Q Consensus        75 ---------------~~~~i~i~~~~~~~gt~~al~~~~~~i~-~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~  138 (362)
                                     ....+.++......++.+++..+.+.+. +++|+++.+|.+++.++..+++.|......++....
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (259)
T d1tzfa_          78 FHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT  157 (259)
T ss_dssp             EEGGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred             chhccccchhhhccccccceeEEeccccccccchhhhhhhhccCCCceEEeccccccccchhhhhhhhcccccceeeccc
Confidence                           0112445555667899999988877665 456999999999999999999999988887776654


Q ss_pred             eeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHH
Q 018019          139 SVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRS  218 (362)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~  218 (362)
                      ..                   ...++.+.... .++ .....    ++               ...+.+..+|+|++++.
T Consensus       158 ~~-------------------~~~~~~~~~~~-~~i-~~~~~----~~---------------~~~~~~~~~G~y~~~~~  197 (259)
T d1tzfa_         158 FP-------------------PGRFGALDIQA-GQV-RSFQE----KP---------------KGDGAMINGGFFVLNPS  197 (259)
T ss_dssp             CC-------------------CCCSEEEEEET-TEE-EEEEE----SC---------------SCCSCCEECCCEEECGG
T ss_pred             cc-------------------cccCCceeccc-ceE-Eeeee----cc---------------ccceeeecceeccccch
Confidence            31                   22344444432 222 22221    11               12457889999999999


Q ss_pred             HHHHHHhcCcccccchhhhhhHHHHhhhhcccccCCCCCCccccccCCCcchhhhhhccCCCcccccccCCCCCCCCCCc
Q 018019          219 VLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRR  298 (362)
Q Consensus       219 vl~~~~~~~~~~~s~~~d~ip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (362)
                      ++..+ .+.  ..++..++++.|+++.                                                     
T Consensus       198 ~~~~i-~~~--~~~~~~~~l~~l~~~~-----------------------------------------------------  221 (259)
T d1tzfa_         198 VIDLI-DND--ATTWEQEPLMTLAQQG-----------------------------------------------------  221 (259)
T ss_dssp             GGGGC-CST--TCCTTTHHHHHHHHTT-----------------------------------------------------
T ss_pred             hhhhc-ccC--cCccHHHHHHHHHhcC-----------------------------------------------------
Confidence            88544 332  3456678999988642                                                     


Q ss_pred             eeeEEEEEecCCceEEEeCCHHHHHHHhHHHhh
Q 018019          299 THKCCVYIASNSKYCVRLNSIQAFMDINRDVIG  331 (362)
Q Consensus       299 ~~~~~~~~~~~~~y~~rin~~~~Y~~~n~~~l~  331 (362)
                        ++++|.+  +|||..|+|+..|.++|+-+.+
T Consensus       222 --~v~~~~~--~g~W~didt~~d~~~~~~~~~~  250 (259)
T d1tzfa_         222 --ELMAFEH--PGFWQPMDTLRDKVYLEGLWEK  250 (259)
T ss_dssp             --CEEEEEE--CSCEEECCSHHHHHHHHHHHHT
T ss_pred             --CeEEEEe--CCEEEECCCHHHHHHHHHHHHc
Confidence              3467777  7899999999999999988776

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=5.2e-27  Score=211.80  Aligned_cols=189  Identities=20%  Similarity=0.263  Sum_probs=132.8

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeee-CCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcc
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLH   78 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv-~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~   78 (362)
                      |+..|||||||.||||+||+|..+||||+|| +|+|||+|+++++... +.++++|++++..  +.+..    .+  ..+
T Consensus         1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~--~~~~~----~~--~~~   72 (268)
T d2cu2a2           1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQ--EAVAR----PY--ADG   72 (268)
T ss_dssp             CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGG--HHHHG----GG--CSS
T ss_pred             CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHH--HHHhh----hh--ccc
Confidence            8888999999999999999667889999997 5699999999999874 6778888887542  23332    22  235


Q ss_pred             eEEEEcCCCCCHHHHHHHHHHhc---CCCcEEEEeCCcccCCChH--HHHHH---HHhcCCeEEEEEeeeccCCCcccCC
Q 018019           79 VEVATVPEDVGTAGALRAIAHHL---TAKDVLVVSGDLVSDVPPG--AVTAA---HRRHDAVVTAMICSVPVSGLSEAGS  150 (362)
Q Consensus        79 i~i~~~~~~~gt~~al~~~~~~i---~~~~~lv~~~D~i~~~~l~--~~l~~---h~~~~a~~t~l~~~~~~~~~~~~~~  150 (362)
                      +.++.++...||+.++..+...+   .++.++|++||.++..++.  ..+..   +.+.+..+|+...+..         
T Consensus        73 ~~ii~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------  143 (268)
T d2cu2a2          73 IRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTR---------  143 (268)
T ss_dssp             SEEEEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSS---------
T ss_pred             cceeeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeeccccc---------
Confidence            67777888899999888775433   2567999999988877653  33333   2244666666554322         


Q ss_pred             CCCccCCCCCCcceEEEEcCCCc---EEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHh
Q 018019          151 SGAKDKTKKPGRYNIIGMDPTKQ---FLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       151 ~~~~~~~~~~~~~~~v~~d~~~~---~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                              .+..||++.+++++.   .+..+.++++.+..    ....       ....++++|||+|++++|...++
T Consensus       144 --------~~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~----~~~~-------~~~~~~N~Giy~f~~~~l~~~~~  202 (268)
T d2cu2a2         144 --------PETEYGYIRLGPREGAWYRGEGFVEKPSYAEA----LEYI-------RKGYVWNGGVFAFAPATMAELFR  202 (268)
T ss_dssp             --------CCSSSCEEEEEEEETTEEEEEEEECCCCHHHH----HHHH-------HTTCEEEEEEEEECHHHHHHHHH
T ss_pred             --------cccccceEEeccccccchhhheeecccchhhh----hhhh-------ccCcccchhhhhcchHHHHHHHH
Confidence                    367899999876532   45667654432221    1111       12378999999999999976654

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.92  E-value=1.3e-24  Score=190.80  Aligned_cols=168  Identities=15%  Similarity=0.205  Sum_probs=120.5

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |+|+|||||||.||||+|+ |...||||+||+|+|||+|+++.+.++|+++|+|++++..  +.+.. +.+.    ++++
T Consensus         2 m~mkaiIlaaG~GtRl~p~-t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~~--e~i~~-~~~~----~~i~   73 (229)
T d1jyka_           2 IRVKAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK--EQFDY-LKEK----YGVR   73 (229)
T ss_dssp             CCCEEEEEECSCCGGGTTT-TSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTG--GGGTH-HHHH----HCCE
T ss_pred             CceeEEEECCCCcccCCcc-ccCCCcceeEECCEEHHHHHHHHHHHhCCcccccccccch--hhhhh-hhhh----cccc
Confidence            9999999999999999999 9999999999999999999999999999999999998653  45543 3332    2566


Q ss_pred             EEEc--CCCCCHHHHHHHHHHhcCCCcEEEEeCCcccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019           81 VATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDLVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (362)
Q Consensus        81 i~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (362)
                      ++..  .++.|++++++.+.+.+. +++++.++|+++...+...+    ..   ..++.....                 
T Consensus        74 i~~~~~~~~~Gt~~sl~~a~~~l~-~~~ii~~dd~~~~~~~~~~~----~~---~~~~~~~~~-----------------  128 (229)
T d1jyka_          74 LVFNDKYADYNNFYSLYLVKEELA-NSYVIDADNYLFKNMFRNDL----TR---STYFSVYRE-----------------  128 (229)
T ss_dssp             EEECTTTTTSCTHHHHHTTGGGCT-TEEEEETTEEESSCCCCSCC----CS---EEEEECEES-----------------
T ss_pred             ccccccccccccccccccchhhhc-ccccccccccccccchhhhh----hc---cccceeeee-----------------
Confidence            6654  346899999999988874 56776666676665443221    11   222222221                 


Q ss_pred             CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHH
Q 018019          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEV  223 (362)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~  223 (362)
                      ++..++++..++++++ ..+.     +++                ..++..+|+|++++.....+
T Consensus       129 ~~~~~~~~~~~~~~~i-~~~~-----~~~----------------~~~~~~~gi~~~~~~~~~~~  171 (229)
T d1jyka_         129 DCTNEWFLVYGDDYKV-QDII-----VDS----------------KAGRILSGVSFWDAPTAEKI  171 (229)
T ss_dssp             SCSSCCEEEECTTCBE-EEEE-----CCC----------------SSEEBCCSEEEECHHHHHHH
T ss_pred             eccccceeEEccCCce-eeEE-----Eec----------------ccceEEEEEEEEcHHHHHHH
Confidence            1445677888887764 4443     221                23556789999998876544

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.87  E-value=4.3e-21  Score=169.63  Aligned_cols=179  Identities=22%  Similarity=0.305  Sum_probs=130.5

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEEE
Q 018019            4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVAT   83 (362)
Q Consensus         4 ~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~   83 (362)
                      .|||||||.||||+|    .+||||+||+|+|||+|+++.|.++|+++++|++++..  +.+..+..      ....+..
T Consensus         3 ~AIIlAaG~GtRl~~----~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~--~~~~~~~~------~~~~~~~   70 (250)
T d1g97a2           3 FAIILAAGKGTRMKS----DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKA--ELVEEVLA------GQTEFVT   70 (250)
T ss_dssp             EEEEECCCCCGGGCC----SSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTH--HHHHHHTT------TTSEEEE
T ss_pred             EEEEECCCCCCCCCC----CCCceeeEECCeeHHHHHHHHHHHcCCCeEEEeccccc--chhhhhcc------ccccccc
Confidence            699999999999965    57999999999999999999999999999999999753  23333322      2345555


Q ss_pred             cCCCCCHHHHHHHHHHhcC--CCcEEEEeC-C-cccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019           84 VPEDVGTAGALRAIAHHLT--AKDVLVVSG-D-LVSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (362)
Q Consensus        84 ~~~~~gt~~al~~~~~~i~--~~~~lv~~~-D-~i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (362)
                      .....|+.+++..+...+.  .++++++.+ | ++.+.++..+++.|...++.+++...+..                 .
T Consensus        71 ~~~~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-----------------~  133 (250)
T d1g97a2          71 QSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD-----------------N  133 (250)
T ss_dssp             CSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS-----------------C
T ss_pred             cccccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceec-----------------c
Confidence            6677899999988877665  234555544 4 56677899999999999999888776543                 1


Q ss_pred             CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                      +..++.+..+..+.+ ..+.++    ++...          .....++.++|+|+|+...|..+++.
T Consensus       134 ~~~~~~~~~~~~~~v-~~~~~~----~~~~~----------~~~~~~~~~~g~y~f~~~~l~~~l~~  185 (250)
T d1g97a2         134 PFGYGRIVRNDNAEV-LRIVEQ----KDATD----------FEKQIKEINTGTYVFDNERLFEALKN  185 (250)
T ss_dssp             CTTSCEEEECTTCCE-EEEECG----GGCCH----------HHHTCCEEEEEEEEEEHHHHHHHHTT
T ss_pred             cCCCceEEEeeceEE-EEeecc----ccccc----------cccccceeeeeeeecchHHHHHHHHH
Confidence            456677777776665 344321    11100          01234788999999999988877654

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=9.4e-19  Score=154.49  Aligned_cols=180  Identities=15%  Similarity=0.222  Sum_probs=117.7

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      .|++||||||.||||+|    .+||||+||+|+|||+|+|+.+.+.|+++|+|++++..  +.+..+..     .....+
T Consensus         2 ~MkvIILAAG~GtRm~~----~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~--~~~~~~~~-----~~~~~~   70 (248)
T d2oi6a2           2 AMSVVILAAGKGTRMYS----DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGG--DLLKQALK-----DDNLNW   70 (248)
T ss_dssp             CEEEEEECCSCCGGGCC----SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCH--HHHHHHCC-----CTTEEE
T ss_pred             CceEEEECCCCCCCCCC----CCCeeeEEECChhHHHHHHHHHHHcCCcEEEeccCccc--ceeeeecc-----cccccc
Confidence            58999999999999954    67999999999999999999999999999999999763  34433322     233445


Q ss_pred             EEcCCCCCHHHHHHHHHHhcCC-CcEEEEeCCcccCCChHHHHHHH-HhcCCeEEEEEeeeccCCCcccCCCCCccCCCC
Q 018019           82 ATVPEDVGTAGALRAIAHHLTA-KDVLVVSGDLVSDVPPGAVTAAH-RRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKK  159 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~~-~~~lv~~~D~i~~~~l~~~l~~h-~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~  159 (362)
                      +.+....|+++++..+.+.+.. .++++..+|..+... ..+-..+ ........++.....                 +
T Consensus        71 ~~~~~~~g~~~~~~~~~~~i~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------------~  132 (248)
T d2oi6a2          71 VLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISV-ETLQRLRDAKPQGGIGLLTVKLD-----------------D  132 (248)
T ss_dssp             EECSSCCCHHHHHHHHGGGSCTTSEEEEEETTCTTCCH-HHHHHHHHHCCTTSEEEEEEECS-----------------C
T ss_pred             cccccCcccHHHHHhhhhhhccccceeeecCccccccc-hhHHHHHHHhhccccceeEEEec-----------------C
Confidence            5566789999999999888764 457777787655432 2222222 223344444443321                 2


Q ss_pred             CCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHHhc
Q 018019          160 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       160 ~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                      +..++.+..+. +..+....     ++.....          .....+..++.|+|+.+.|..++..
T Consensus       133 ~~~~~~~~~~~-~~~~~~~~-----~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~l~~  183 (248)
T d2oi6a2         133 PTGYGRITREN-GKVTGIVE-----HKDATDE----------QRQIQEINTGILIANGADMKRWLAK  183 (248)
T ss_dssp             CTTSCEEEEET-TEEEEEEC-----GGGCCTT----------GGGCCEEEEEEEEEEHHHHHHHHTT
T ss_pred             Ccccccccccc-Cccceeee-----ccCCChh----------hhhhhhhhhhhhccchHHHHHHHHH
Confidence            44556665544 33332222     1111000          1234667889999999988777653

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=5.3e-16  Score=135.73  Aligned_cols=112  Identities=25%  Similarity=0.309  Sum_probs=89.3

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      |+..|||||||+|+||+++ + ..||+|+|++|+|||+|+++.+..+|+++|+|++++...                ...
T Consensus         1 M~~~avIlA~G~~~r~~r~-g-~~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~~~----------------~~~   62 (231)
T d2dpwa1           1 MRPSAIVLAGGKEAWAERF-G-VGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV----------------PAP   62 (231)
T ss_dssp             CCCEEEEECCCBCSGGGTT-T-CSBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCS----------------SCC
T ss_pred             CCceEEEECCCCCCCCCCC-C-CCCceeeEECCeeHHHHHHHHHHhcCCCeEEeeeecccc----------------cee
Confidence            8999999999999999888 5 357999999999999999999999999888888774321                111


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCC
Q 018019           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a  131 (362)
                      ........|+.++++.+++.+. ++++++.||  ++.+..+..+++.+.+.++
T Consensus        63 ~~~~~~~~~~~~~v~~al~~~~-~~~lv~~~D~P~i~~~~i~~l~~~~~~~~~  114 (231)
T d2dpwa1          63 ALTLPDRGGLLENLEQALEHVE-GRVLVATGDIPHLTEEAVRFVLDKAPEAAL  114 (231)
T ss_dssp             SEEECCCSSHHHHHHHHHHTCC-SEEEEEETTCTTCCHHHHHHHHHHCCSCSE
T ss_pred             eeecccchHHHHHHHHHHHhhc-CceEEeeCCCccCCHHHHHHHHHHhhhcCc
Confidence            1223456899999999999884 789999999  4666678888886654443

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.3e-15  Score=130.86  Aligned_cols=120  Identities=19%  Similarity=0.252  Sum_probs=85.0

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |+..|||||||.||||    ..++||+|+|++|+|||+|+++.+.++ ++++|+|++++...  .+......   ....+
T Consensus         2 M~i~AIILAaG~gtRm----~~~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~--~~~~~~~~---~~~~v   72 (225)
T d1i52a_           2 LDVCAVVPAAGFGRRM----QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDS--RFAQLPLA---NHPQI   72 (225)
T ss_dssp             CCEEEEEEECCCCGGG----CCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCC--SGGGSGGG---GCTTE
T ss_pred             CCEEEEEeCCCcceeC----CCCCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhh--hhhhhhhc---ccccc
Confidence            8999999999999999    678999999999999999999999887 58999999885432  22111111   11234


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhcCCCc-EEEEeCC--cccCCChHHHHHHHHhcCC
Q 018019           80 EVATVPEDVGTAGALRAIAHHLTAKD-VLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i~~~~-~lv~~~D--~i~~~~l~~~l~~h~~~~a  131 (362)
                      .+.  ....+..++++.+...+.+.+ +++..+|  ++...++..++........
T Consensus        73 ~~~--~~~~~~~~sv~~~~~~~~~~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~  125 (225)
T d1i52a_          73 TVV--DGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRT  125 (225)
T ss_dssp             EEE--ECCSSHHHHHHHHHHTSTTCSEEEECCTTCTTCCHHHHHHHHGGGGTCSS
T ss_pred             ccc--cCCcchhHHHHhhhcccCccceeeeeccCCCCCCHHHHHHHHhhhhhccc
Confidence            333  334567789999988886444 5566677  4555556666666554433

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=1.5e-14  Score=125.48  Aligned_cols=120  Identities=19%  Similarity=0.290  Sum_probs=83.4

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++ |||||||.|+||    +...||+|++++|+|||+|+|+.+.++ ++++|+|+++....     +++.........+
T Consensus         3 M~i-AIILAaG~gtRm----~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~-----~~~~~~~~~~~~~   72 (221)
T d1vpaa_           3 MNV-AILLAAGKGERM----SENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF-----EVVEKRVFHEKVL   72 (221)
T ss_dssp             CEE-EEEEECCCCGGG----CCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGH-----HHHHTTCCCTTEE
T ss_pred             CeE-EEEccCcCcccC----CCCCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhh-----hHHHhhhcccccc
Confidence            655 899999999999    678999999999999999999999887 58899998874321     2232221111233


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhc---CCCcEEEEeCC--cccCCChHHHHHHHHhcCCe
Q 018019           80 EVATVPEDVGTAGALRAIAHHL---TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAV  132 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i---~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~  132 (362)
                      .++.  ...+...++..+...+   ..+.++++.||  ++....+..+++.+.+....
T Consensus        73 ~~~~--~~~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~  128 (221)
T d1vpaa_          73 GIVE--GGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAA  128 (221)
T ss_dssp             EEEE--CCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEE
T ss_pred             cccc--ccccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhcccccc
Confidence            3332  3344555555554443   24668999999  45666788888888765543

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.49  E-value=6.1e-14  Score=122.05  Aligned_cols=123  Identities=17%  Similarity=0.257  Sum_probs=82.4

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      +.+||||||.||||    ..+.||+|++++|+|||+|+|+.+.+++ +++|+|+++... .    +++..+. ......+
T Consensus         5 i~~IIlAaG~GtRm----~~~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~-~----~~~~~~~-~~~~~~~   74 (226)
T d1w77a1           5 VSVILLAGGQGKRM----KMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFF-R----DIFEEYE-ESIDVDL   74 (226)
T ss_dssp             EEEEEECCC-----------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGG-T----HHHHTTT-TSCSSEE
T ss_pred             eEEEEeCCccCccC----cCCCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhh-h----hhhhccc-ccccccc
Confidence            46899999999999    6789999999999999999999998885 788888887432 1    2232221 1233333


Q ss_pred             EEcCCCCCHHHHHHHHHHhcC--CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 018019           82 ATVPEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus        82 ~~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~  135 (362)
                      ........+.++++.++..+.  .+.+++..||  ++....+..+++.+...++.++.
T Consensus        75 ~~~~gg~~r~~sv~~~l~~~~~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i~~  132 (226)
T d1w77a1          75 RFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLG  132 (226)
T ss_dssp             EEECCCSSHHHHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEE
T ss_pred             ccccccchhhhhhhhhHhhhccccccceecccccccccHHHhhhhhhhhhccCceeec
Confidence            333333456789999988775  3457777888  56666788888888877765444

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=99.43  E-value=1.9e-13  Score=118.83  Aligned_cols=124  Identities=17%  Similarity=0.192  Sum_probs=74.1

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      ++..|||||||.|+||    ...+||+|++++|+|||+|+++.+.+++ ++.++|+++..+   .+.+.+...+.   .+
T Consensus         2 ~K~iAIIlAaG~gtRm----~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~---~~~~~~~~~~~---~~   71 (226)
T d1vgwa_           2 RKNIALIPAAGIGVRF----GADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED---TFADKVQTAFP---QV   71 (226)
T ss_dssp             CCEEEEEECC--------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC---STHHHHHHHCT---TS
T ss_pred             CceEEEEeCCCCcccC----CcCCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhh---hhhhhhccccc---ce
Confidence            3457999999999999    6789999999999999999999999886 577778776443   33344443321   22


Q ss_pred             EEEEcCCCCCHHHHHHHHHHhc-------CCCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEE
Q 018019           80 EVATVPEDVGTAGALRAIAHHL-------TAKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus        80 ~i~~~~~~~gt~~al~~~~~~i-------~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~  135 (362)
                      ..+ ........+++..++..+       ..+.+++..||  ++....+..+++.+...+...++
T Consensus        72 ~~~-~~g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~  135 (226)
T d1vgwa_          72 RVW-KNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL  135 (226)
T ss_dssp             EEE-CCCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE
T ss_pred             eec-cccccccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceee
Confidence            222 222233344444443322       12446777787  56666788899988877665544

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=99.39  E-value=2.2e-13  Score=116.44  Aligned_cols=114  Identities=19%  Similarity=0.259  Sum_probs=85.4

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      ++.+||||||.|+||    ....||+|++++|+|||+|+++++.+.. ++.|+|++...   +.    +... .  ..+.
T Consensus         1 ~is~IILAaG~g~Rm----g~~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~~---~~----~~~~-~--~~~~   66 (205)
T d1w55a1           1 EMSLIMLAAGNSTRF----NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNI---TY----MKKF-T--KNYE   66 (205)
T ss_dssp             CEEEEEECCSCCTTT----CSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCH---HH----HHTT-C--SSSE
T ss_pred             CeEEEEeCCccCeeC----CcCCCceeEEECCEEHHHHHHHHHHhhccccccccccccc---cc----cccc-c--cccc
Confidence            357899999999999    6788999999999999999999998875 67777776521   12    2221 1  2344


Q ss_pred             EEEcCCCCCHHHHHHHHHHhcCCCcEEEEeCC--cccCCChHHHHHHHHhcCC
Q 018019           81 VATVPEDVGTAGALRAIAHHLTAKDVLVVSGD--LVSDVPPGAVTAAHRRHDA  131 (362)
Q Consensus        81 i~~~~~~~gt~~al~~~~~~i~~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a  131 (362)
                      ++.  ......++++.+++.+..+.+++..||  ++....+..+++.+.+.++
T Consensus        67 ~v~--Gg~~r~~Sv~~gl~~~~~~~VlIhd~~rP~i~~~~i~~li~~~~~~~~  117 (205)
T d1w55a1          67 FIE--GGDTRAESLKKALELIDSEFVMVSDVARVLVSKNLFDRLIENLDKADC  117 (205)
T ss_dssp             EEE--CCSSHHHHHHHHHTTCCSSEEEEEETTCTTCCHHHHHHHHTTGGGCSE
T ss_pred             ccc--cccchhhhhhhhhhhhhhcceeeeccCcccCcHHHHHHHHhhhhcccc
Confidence            443  345567899999998876778888898  5666678888887765543

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=99.35  E-value=1.2e-11  Score=108.41  Aligned_cols=188  Identities=16%  Similarity=0.161  Sum_probs=112.1

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      +.|||+|.|.++|+    ..   |+|.+++|+|||+|+++.+.++++++|+|++..    +.+.++....     +..+.
T Consensus         2 ~i~iIpAR~gSkri----p~---KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsTd~----~~i~~~~~~~-----g~~v~   65 (246)
T d1vh1a_           2 FVVIIPARYASTRL----PG---KPLVDINGKPMIVHVLERARESGAERIIVATDH----EDVARAVEAA-----GGEVC   65 (246)
T ss_dssp             CEEEEECCCCCC------CC---TTTCEETTEEHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHHT-----TCEEE
T ss_pred             EEEEEecCCCCcCC----CC---chhhhcCCccHHHHHHHHHHHcCCCcEEEEecC----ccccchhhcc-----cccce
Confidence            46999999999999    33   999999999999999999999999999999984    3566666543     33343


Q ss_pred             Ec--CCCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccC
Q 018019           83 TV--PEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDK  156 (362)
Q Consensus        83 ~~--~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~  156 (362)
                      ..  ....|+......+.....  .+.++.+.||.  +.+.++..+++.+.....+....+.....  ....        
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~--~~~~--------  135 (246)
T d1vh1a_          66 MTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHN--AEEA--------  135 (246)
T ss_dssp             ECC-----CHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCC--HHHH--------
T ss_pred             eecccccccchHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccc--hhcc--------
Confidence            32  333455444443333332  23577788994  44567888888888877765555443321  1000        


Q ss_pred             CCCCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhcCceeeecCceeceEEeeCHHHHHHHH
Q 018019          157 TKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL  224 (362)
Q Consensus       157 ~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~~~~~~~~~l~~~giYi~s~~vl~~~~  224 (362)
                        ...+..-+..+.+|+.+.+...      ....................+...|+|+|++..|....
T Consensus       136 --~~~~~vk~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~  195 (246)
T d1vh1a_         136 --FNPNAVKVVLDAEGYALYFSRA------TIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYV  195 (246)
T ss_dssp             --TCTTSCEEEECTTSBEEEEESS------CSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHH
T ss_pred             --cCCCcceeeecccCcccccccc------cchhhhhhhhhhhhccchhhheecceeeechhhhhhhc
Confidence              0112233556777775433221      11111111111111122345678899999999997664

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.1e-12  Score=108.44  Aligned_cols=107  Identities=17%  Similarity=0.269  Sum_probs=76.3

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      ++.|||||||+|+||    . ..||+|++++|+|||+|+++.+... +.+|+|+++...   ..   ..     ..++.+
T Consensus         3 ~i~~iILAgG~ssRm----G-~~~K~ll~~~g~~ll~~~l~~l~~~-~~~ivv~~~~~~---~~---~~-----~~~~~v   65 (188)
T d1e5ka_           3 TITGVVLAGGKARRM----G-GVDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQ---EI---YQ-----ASGLKV   65 (188)
T ss_dssp             SEEEEEECCCCCSSS----C-SSCGGGSEETTEEHHHHHHHHHHHH-CSCEEEECSSSH---HH---HH-----TTSCCE
T ss_pred             ceeEEEEcCCCCcCC----C-CCCcccCEECCEehhHHHHhhhccc-ccccccccCccH---Hh---hh-----hcCCCc
Confidence            467999999999999    3 3579999999999999999999876 667888877432   21   11     123333


Q ss_pred             EEc--CCCCCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHH
Q 018019           82 ATV--PEDVGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAA  125 (362)
Q Consensus        82 ~~~--~~~~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~  125 (362)
                      ...  .+..|...++..+......+.+++++||+  +....+..+++.
T Consensus        66 ~~d~~~~~~~~~~g~~~~~~~~~~~~vlv~~~D~P~i~~~~i~~L~~~  113 (188)
T d1e5ka_          66 IEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQ  113 (188)
T ss_dssp             ECCCTTCCCSHHHHHHHHHHHCCSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             cccccccccchhHHHHHHHHhcccceEEEeccCCCCCCHHHHHHHHHh
Confidence            322  33467777788787777677899999995  444446666554

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=4.4e-11  Score=105.01  Aligned_cols=191  Identities=15%  Similarity=0.178  Sum_probs=113.1

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCCCCeEEEEccCcchHHHHHHHHHhhhcCCcceEEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVDRLHVEVA   82 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~   82 (362)
                      +.+||+|.|.++|+    ..   |.|.+++|+|||.|+++++.++++++|+|++...    .+.+....+   ...+.+.
T Consensus         2 ~~~iIpAR~gSkRl----p~---Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsTd~~----~i~~~~~~~---~~~~~~~   67 (255)
T d1vica_           2 FTVIIPARFASSRL----PG---KPLADIKGKPMIQHVFEKALQSGASRVIIATDNE----NVADVAKSF---GAEVCMT   67 (255)
T ss_dssp             CEEEEECCCCCSSS----TT---GGGCEETTEEHHHHHHHHHHHTTCSEEEEEESCH----HHHHHHHHT---TCEEEEC
T ss_pred             EEEEEecCCCCCCC----CC---chhhhhCCcCHHHHHHHHHHHCCCCeEEEEcCCc----ccchhhhhh---cccccee
Confidence            57899999999998    33   9999999999999999999999999999998743    455544432   1122232


Q ss_pred             EcCCCCCHHHHHHHHHHhcC--CCcEEEEeCCc--ccCCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCC
Q 018019           83 TVPEDVGTAGALRAIAHHLT--AKDVLVVSGDL--VSDVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTK  158 (362)
Q Consensus        83 ~~~~~~gt~~al~~~~~~i~--~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~  158 (362)
                      ......|+..+...+.....  .+.++++.||.  +...++..+++.+.......+.......  .+..          .
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~--~~~~----------~  135 (255)
T d1vica_          68 SVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIH--DAEE----------L  135 (255)
T ss_dssp             CCSSCCHHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECC--CHHH----------H
T ss_pred             eeccCCcchhhHHHHHHhhccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeecc--chhh----------c
Confidence            22333445444444444332  24467778884  4445688888888887776666554322  1100          0


Q ss_pred             CCCcceEEEEcCCCcEEEEeecCcccccccccchHHHhhc---C-ceeeecCceeceEEeeCHHHHHHHHh
Q 018019          159 KPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAV---G-QMDIRADLMDAHMYAFNRSVLQEVLD  225 (362)
Q Consensus       159 ~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~l~~~---~-~~~~~~~l~~~giYi~s~~vl~~~~~  225 (362)
                      ..........++++..+..... ..     ...+......   . .........+.|+|+|++..|..+..
T Consensus       136 ~~~~~v~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~  200 (255)
T d1vica_         136 FNPNAVKVLTDKDGYVLYFSRS-VI-----PYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQ  200 (255)
T ss_dssp             TCTTSCEEEECTTSBEEEEESS-CS-----SCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHH
T ss_pred             cCccceeeeeccCCcccccccc-cc-----cccchhhhhccchhhcccccchheeeeeecccHHHHhhhhc
Confidence            1223344566666765433321 11     0111100000   0 00122345678999999999977643

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=99.26  E-value=8.6e-11  Score=102.54  Aligned_cols=115  Identities=19%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             CceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhC-CCCeEEEEccCcchHHHHHHHHHhhhcCCcceE
Q 018019            2 DFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRVGGWISAAYVDRLHVE   80 (362)
Q Consensus         2 ~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~-gi~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~   80 (362)
                      +..+||+|.|.++||    ..   |+|++++|+|||+|+++++.++ ++++|+|++...    .+......+     +..
T Consensus         2 k~i~iIpAR~~SkRl----~~---Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~~----~i~~~~~~~-----~~~   65 (245)
T d1h7ea_           2 KAVIVIPARYGSSRL----PG---KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDP----RVEQAVQAF-----GGK   65 (245)
T ss_dssp             CEEEEEECCSCCSSS----TT---GGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCH----HHHHHHHHT-----TCE
T ss_pred             CEEEEEcCCCCCcCC----CC---ccccccCCccHHHHHHHHHHhCCCCCeEEEecccc----cchhhhhhc-----Cce
Confidence            356899999999998    33   9999999999999999999887 588888887743    444444432     445


Q ss_pred             EEEcCCC-CCHHHHHHHHHHhcCCCcEEEEeCCc--ccCCChHHHHHHHHhcCCe
Q 018019           81 VATVPED-VGTAGALRAIAHHLTAKDVLVVSGDL--VSDVPPGAVTAAHRRHDAV  132 (362)
Q Consensus        81 i~~~~~~-~gt~~al~~~~~~i~~~~~lv~~~D~--i~~~~l~~~l~~h~~~~a~  132 (362)
                      +...... .++.+.+..+...+..+.++++.||.  +....+..+++.+......
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~  120 (245)
T d1h7ea_          66 AIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPAL  120 (245)
T ss_dssp             EEECCSCCSSHHHHHHHHHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTC
T ss_pred             EEEecCccccccHHHHHHHHhcCCCEEEEecchhhhcccccchhhhhcccccccc
Confidence            5554433 45557777777878767778888994  3345677888877765444

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.12  E-value=2.8e-10  Score=97.69  Aligned_cols=120  Identities=18%  Similarity=0.155  Sum_probs=85.9

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcceEE
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHVEV   81 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i   81 (362)
                      ..|||+|+|.++|+ |-      |+|++++|+|||+|+++.+.+++ +++|+|.+..    +.+.+.+..+     +..+
T Consensus         5 ~iaiIpar~~S~R~-p~------K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~----~~i~~i~~~~-----~~~~   68 (225)
T d1eyra_           5 NIAVILARQNSKGL-PL------KNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG----GLIAEEAKNF-----GVEV   68 (225)
T ss_dssp             EEEEEECCSCCSSS-TT------GGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESC----HHHHHHHHHT-----TCEE
T ss_pred             EEEEEccCCCCcCC-CC------ccccccCCeEHHHHHHHHHHHcCCCceEEEeecc----chhhhhhhhh-----ccee
Confidence            35799999999999 33      99999999999999999999987 6888887763    3555555542     3333


Q ss_pred             EEc-----CCCCCHHHHHHHHHHhcC--CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEe
Q 018019           82 ATV-----PEDVGTAGALRAIAHHLT--AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMIC  138 (362)
Q Consensus        82 ~~~-----~~~~gt~~al~~~~~~i~--~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~  138 (362)
                      ...     ....++.+.++.+.+.+.  .+.++++.||  ++...++..+++.+.+.+.+..+.+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~  134 (225)
T d1eyra_          69 VLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSAC  134 (225)
T ss_dssp             EECCHHHHSTTCCHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEE
T ss_pred             eeeccccccccccchhhccccccccccccceEEEeeccccccccccccccceeeccccccccceee
Confidence            322     223556677777776654  3568888899  46566788898888777766444333

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=6.1e-10  Score=95.82  Aligned_cols=123  Identities=15%  Similarity=0.144  Sum_probs=90.3

Q ss_pred             CCceEEEEeCCCCCCCCCCCCCCCCeeeeeeCCcchHHHHHHHHHhCC-CCeEEEEccCcchHHHHHHHHHhhhcCCcce
Q 018019            1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSN-IKDLIVVVEGADAALRVGGWISAAYVDRLHV   79 (362)
Q Consensus         1 M~~~avIlA~G~gtrl~pl~t~~~pK~llpv~g~plI~~~l~~l~~~g-i~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i   79 (362)
                      |++.|||+|+|.++|| |-      |+|++++|+|||+|+++++.+++ +++|+|++..    +.+.+....+     ++
T Consensus         2 ~ki~aiIpaR~~S~Rl-p~------K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~----~~i~~~~~~~-----~~   65 (228)
T d1qwja_           2 PHLAALVLARGGSKGI-PL------KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH----DEIENVAKQF-----GA   65 (228)
T ss_dssp             CCEEEEEECCSCCSSS-SC------TTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESC----HHHHHHHHHT-----TC
T ss_pred             CCEEEEeccCCCCCCC-CC------cchhhhCCeeHHHHHHHHHHhcCCcceEEEecch----hhhhhhhhhc-----Cc
Confidence            6789999999999999 33      99999999999999999998876 7888888763    3555555432     34


Q ss_pred             EEEEc-----CCCCCHHHHHHHHHHhcC-CCcEEEEeCC--cccCCChHHHHHHHHhcCCeEEEEEee
Q 018019           80 EVATV-----PEDVGTAGALRAIAHHLT-AKDVLVVSGD--LVSDVPPGAVTAAHRRHDAVVTAMICS  139 (362)
Q Consensus        80 ~i~~~-----~~~~gt~~al~~~~~~i~-~~~~lv~~~D--~i~~~~l~~~l~~h~~~~a~~t~l~~~  139 (362)
                      .+...     .......+.+.++..... .+.++++.+|  ++...++..+++.++..+.+..+.+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~  133 (228)
T d1qwja_          66 QVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVR  133 (228)
T ss_dssp             EEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred             cccccccccccccchhhhhhhhccccccccceeeeecccccccCchhhhhhhhhhhccCccccccccc
Confidence            44432     123456678887776554 3557777788  566677999999998888876554443

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.68  E-value=4.1e-07  Score=83.54  Aligned_cols=133  Identities=12%  Similarity=0.130  Sum_probs=91.1

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeeeC-CcchHHHHHHHHHh----CCC-CeEEEEccCcchHHHHHHHHHhhhcCC
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPVA-NRPVLSYVLEQLEL----SNI-KDLIVVVEGADAALRVGGWISAAYVDR   76 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv~-g~plI~~~l~~l~~----~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~   76 (362)
                      +-+|+||||.||||    +.+.||.++||+ |+++++..++++..    .|. -.++|.++... .+...++++++....
T Consensus        75 vavv~LaGG~GTRL----G~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T-~~~t~~~l~~~~~fg  149 (378)
T d2icya2          75 LVVLKLNGGLGTTM----GCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNT-HDDTHKIVEKYTNSN  149 (378)
T ss_dssp             EEEEEEECCBSGGG----TCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTT-HHHHHHHHGGGTTSS
T ss_pred             EEEEEecCCccccc----CCCCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCC-hHHHHHHHHHhccCC
Confidence            46789999999999    789999999996 67999999999864    232 24677776543 357888888753222


Q ss_pred             cceEEEEc----------------C---C-----CCCHHHHHHHH-----HHhcC---CCcEEEEeCCcccCCChHHHHH
Q 018019           77 LHVEVATV----------------P---E-----DVGTAGALRAI-----AHHLT---AKDVLVVSGDLVSDVPPGAVTA  124 (362)
Q Consensus        77 ~~i~i~~~----------------~---~-----~~gt~~al~~~-----~~~i~---~~~~lv~~~D~i~~~~l~~~l~  124 (362)
                      ..+.+..|                +   .     +.|.|+.....     ++.+.   .+++.|.+.|.+....--.++.
T Consensus       150 ~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~lG  229 (378)
T d2icya2         150 VDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILK  229 (378)
T ss_dssp             SCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHHH
T ss_pred             CceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHHH
Confidence            23333321                0   0     45777654432     33332   3789999999765544456788


Q ss_pred             HHHhcCCeEEEEEeee
Q 018019          125 AHRRHDAVVTAMICSV  140 (362)
Q Consensus       125 ~h~~~~a~~t~l~~~~  140 (362)
                      .|.++++++++-+.+.
T Consensus       230 ~~~~~~~~~~~kvv~K  245 (378)
T d2icya2         230 HLIQNKNEYCMEVTPK  245 (378)
T ss_dssp             HHHHHTCSEEEEEEEC
T ss_pred             HHHhcCCcceeEEEec
Confidence            8999999998876653

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=97.55  E-value=0.0027  Score=59.49  Aligned_cols=193  Identities=13%  Similarity=0.164  Sum_probs=111.7

Q ss_pred             ceEEEEeCCCCCCCCCCCCCCCCeeeeee---CCcchHHHHHHHHHh----------CCC-CeEEEEccCcchHHHHHHH
Q 018019            3 FQVVVLAGGTSKKLVPLVSKEVPKALLPV---ANRPVLSYVLEQLEL----------SNI-KDLIVVVEGADAALRVGGW   68 (362)
Q Consensus         3 ~~avIlA~G~gtrl~pl~t~~~pK~llpv---~g~plI~~~l~~l~~----------~gi-~~v~vv~~~~~~~~~i~~~   68 (362)
                      +-+|+||||.||||    +...||.++||   .|+.+++..++++..          .++ --++|.++... .+.+.++
T Consensus       103 vavvllaGG~GTRL----G~~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T-~~~t~~~  177 (501)
T d1jv1a_         103 VAVLLLAGGQGTRL----GVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRT-MESTKEF  177 (501)
T ss_dssp             EEEEEECCCCCCTT----SCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTT-HHHHHHH
T ss_pred             EEEEEECCCccccC----CCCCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhH-hHHHHHH
Confidence            56789999999999    78999999998   478999998877754          222 24677777544 4678888


Q ss_pred             HHh--hhc-CCcceEEEEc--------C-------------CCCCHHHH---HHH--HHHhcC---CCcEEEEeCCccc-
Q 018019           69 ISA--AYV-DRLHVEVATV--------P-------------EDVGTAGA---LRA--IAHHLT---AKDVLVVSGDLVS-  115 (362)
Q Consensus        69 ~~~--~~~-~~~~i~i~~~--------~-------------~~~gt~~a---l~~--~~~~i~---~~~~lv~~~D~i~-  115 (362)
                      +++  ++. +...+.+..|        +             .+.|.|+.   |+.  .++.+.   -+++.+.+.|.+. 
T Consensus       178 l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~  257 (501)
T d1jv1a_         178 FTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILV  257 (501)
T ss_dssp             HHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTC
T ss_pred             HHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccc
Confidence            875  221 1112222211        0             13455543   332  122222   4678899999643 


Q ss_pred             -CCChHHHHHHHHhcCCeEEEEEeeeccCCCcccCCCCCccCCCCCCcceEEEEcCCCcEEEEeecCcccccccccchHH
Q 018019          116 -DVPPGAVTAAHRRHDAVVTAMICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSI  194 (362)
Q Consensus       116 -~~~l~~~l~~h~~~~a~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~l~~~~~~~~~ek~~~i~~~~  194 (362)
                       ..|. .++..+..+++++.+-+.+..  ++.              +.-|++... +|+.  .+.+      -..++...
T Consensus       258 ~~~Dp-~~lG~~~~~~~~~~~kvv~k~--~~~--------------e~~G~l~~~-dg~~--~vvE------ysel~~~~  311 (501)
T d1jv1a_         258 KVADP-RFIGFCIQKGADCGAKVVEKT--NPT--------------EPVGVVCRV-DGVY--QVVE------YSEISLAT  311 (501)
T ss_dssp             CTTCH-HHHHHHHHTTCSEEEEEEECC--STT--------------CSCCEEEEE-TTEE--EEEC------GGGSCHHH
T ss_pred             cccCH-HHHHHHHhcccceeEEEEEcC--CCC--------------cccceEEEE-CCeE--EEEE------eccCCHHH
Confidence             4454 478888899999888766532  111              223444332 3432  2221      01222222


Q ss_pred             HhhcC-ceeeecCceeceEEeeCHHHHHHHHhc
Q 018019          195 LRAVG-QMDIRADLMDAHMYAFNRSVLQEVLDQ  226 (362)
Q Consensus       195 l~~~~-~~~~~~~l~~~giYi~s~~vl~~~~~~  226 (362)
                      ..... .-.......+++.++|+-+.|..+++.
T Consensus       312 ~~~~~~~g~l~f~~~Ni~~~~fsl~fl~~~~~~  344 (501)
T d1jv1a_         312 AQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNV  344 (501)
T ss_dssp             HHCBCTTSSBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred             HhhccCCCcccccccceeheeeEHHHHHHHHHh
Confidence            22211 111222456788899999999888753

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.29  E-value=3.2  Score=35.07  Aligned_cols=105  Identities=10%  Similarity=0.070  Sum_probs=68.1

Q ss_pred             eeeeCCc-c-hHHHHHHHHHhCCC----CeEEEEccCcch---HHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHH
Q 018019           28 LLPVANR-P-VLSYVLEQLELSNI----KDLIVVVEGADA---ALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIA   98 (362)
Q Consensus        28 llpv~g~-p-lI~~~l~~l~~~gi----~~v~vv~~~~~~---~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~   98 (362)
                      .+|+-|+ + .|..+|+.+.+..-    .+|+||=+....   ...+.+++...   ...+.++..+...|.+.+.-.++
T Consensus        27 IIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~---~~~i~vi~~~~n~G~~~a~N~Gi  103 (328)
T d1xhba2          27 VIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKL---KVPVHVIRMEQRSGLIRARLKGA  103 (328)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSS---SSCEEEEECSSCCCHHHHHHHHH
T ss_pred             EEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhc---CCCeEEEEecccccchHHHHHHH
Confidence            4577775 3 68889988876532    267666432211   11233444322   23466766666789999988888


Q ss_pred             HhcCCCcEEEEeCCccc-CCChHHHHHHHHhcCCeEEE
Q 018019           99 HHLTAKDVLVVSGDLVS-DVPPGAVTAAHRRHDAVVTA  135 (362)
Q Consensus        99 ~~i~~~~~lv~~~D~i~-~~~l~~~l~~h~~~~a~~t~  135 (362)
                      +....+.++++.+|.+. +.-+..+++...+.+..+.+
T Consensus       104 ~~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~  141 (328)
T d1xhba2         104 AVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVC  141 (328)
T ss_dssp             HHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEE
T ss_pred             HhhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEe
Confidence            88777889999999644 45588888887776665443

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.64  E-value=0.11  Score=42.13  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=62.9

Q ss_pred             eeeeeCCc-chHHHHHHHHHhCCC-CeEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcCCCCCHHHHHHHHHHhcCCC
Q 018019           27 ALLPVANR-PVLSYVLEQLELSNI-KDLIVVVEGADAALRVGGWISAAYVDRLHVEVATVPEDVGTAGALRAIAHHLTAK  104 (362)
Q Consensus        27 ~llpv~g~-plI~~~l~~l~~~gi-~~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~~~~gt~~al~~~~~~i~~~  104 (362)
                      -++|.-++ ..|..+|+++.+... .+++||.+... .+.. +.+.....+.. ..++......|.+.+.-.+++....+
T Consensus         7 vii~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~s-d~~~-~~i~~~~~~~~-~~~~~~~~~~g~~~a~n~~~~~a~ge   83 (265)
T d1omza_           7 LIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVG-EKGP-EELWNSLGPHP-IPVIFKPQTANKMRNRLQVFPEVETN   83 (265)
T ss_dssp             EEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTT-CCCT-HHHHHHTCCCS-SCEEEEECSSCCGGGGGSCCTTCCSS
T ss_pred             EEEEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCC-CccH-HHHHHHhcccc-eEEEEecCCCCchhhhhhhHHhCCcC
Confidence            35677777 799999999987765 44555544211 1111 12222222222 22333345567777776677777677


Q ss_pred             cEEEEeCCcccCC-ChHHHHHHHHhcCCeE
Q 018019          105 DVLVVSGDLVSDV-PPGAVTAAHRRHDAVV  133 (362)
Q Consensus       105 ~~lv~~~D~i~~~-~l~~~l~~h~~~~a~~  133 (362)
                      .++++.+|.+... .+..+++.+.+....+
T Consensus        84 ~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~  113 (265)
T d1omza_          84 AVLMVDDDTLISAQDLVFAFSIWQQFPDQI  113 (265)
T ss_dssp             EEEEECTTEEECHHHHHHHHHHHTTSTTSE
T ss_pred             EEEEeCcccCCCHHHHHHHHHHHHhCCCcc
Confidence            8999999965554 4788888776655443

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=84.74  E-value=6.5  Score=31.44  Aligned_cols=99  Identities=8%  Similarity=0.040  Sum_probs=64.1

Q ss_pred             eeeeCCc-chHHHHHHHHHhCCCC--eEEEEccCcchHHHHHHHHHhhhcCCcceEEEEcC--------CCCCHHHHHHH
Q 018019           28 LLPVANR-PVLSYVLEQLELSNIK--DLIVVVEGADAALRVGGWISAAYVDRLHVEVATVP--------EDVGTAGALRA   96 (362)
Q Consensus        28 llpv~g~-plI~~~l~~l~~~gi~--~v~vv~~~~~~~~~i~~~~~~~~~~~~~i~i~~~~--------~~~gt~~al~~   96 (362)
                      ++|.-|+ ..|..+|+++.+.-..  +|+|+-...  .+...+.++++. ....+.++..+        ...|.+.++-.
T Consensus         6 iip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S--~d~t~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~   82 (255)
T d1qg8a_           6 IMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNS--NEETLNVIRPFL-NDNRVRFYQSDISGVKERTEKTRYAALINQ   82 (255)
T ss_dssp             EEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSC--CHHHHHHHGGGG-GSTTEEEEECCCCSHHHHHSSCHHHHHHHH
T ss_pred             EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC--CccHHHHHHHhh-hhcccccccccccccccccccchhcccccc
Confidence            4566554 8899999999876554  555554422  234455565532 22456655432        34677788888


Q ss_pred             HHHhcCCCcEEEEeCCc-ccCCChHHHHHHHHhc
Q 018019           97 IAHHLTAKDVLVVSGDL-VSDVPPGAVTAAHRRH  129 (362)
Q Consensus        97 ~~~~i~~~~~lv~~~D~-i~~~~l~~~l~~h~~~  129 (362)
                      +++....+.++++.+|- +.+.-+..+++.+.+.
T Consensus        83 gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~  116 (255)
T d1qg8a_          83 AIEMAEGEYITYATDDNIYMPDRLLKMVRELDTH  116 (255)
T ss_dssp             HHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccchHHHHHHHHHhC
Confidence            88888777888999995 4444478888877554