Citrus Sinensis ID: 018023
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| 224113753 | 465 | predicted protein [Populus trichocarpa] | 1.0 | 0.778 | 0.817 | 1e-176 | |
| 224117960 | 467 | predicted protein [Populus trichocarpa] | 1.0 | 0.775 | 0.820 | 1e-176 | |
| 356520091 | 583 | PREDICTED: DUF246 domain-containing prot | 1.0 | 0.620 | 0.792 | 1e-175 | |
| 297741763 | 717 | unnamed protein product [Vitis vinifera] | 1.0 | 0.504 | 0.795 | 1e-173 | |
| 359494826 | 617 | PREDICTED: DUF246 domain-containing prot | 1.0 | 0.586 | 0.795 | 1e-173 | |
| 356564474 | 579 | PREDICTED: DUF246 domain-containing prot | 1.0 | 0.625 | 0.781 | 1e-173 | |
| 255554775 | 642 | conserved hypothetical protein [Ricinus | 1.0 | 0.563 | 0.802 | 1e-167 | |
| 357480375 | 620 | hypothetical protein MTR_4g132590 [Medic | 0.988 | 0.577 | 0.787 | 1e-166 | |
| 449513539 | 672 | PREDICTED: DUF246 domain-containing prot | 0.997 | 0.537 | 0.783 | 1e-164 | |
| 449455459 | 672 | PREDICTED: DUF246 domain-containing prot | 0.997 | 0.537 | 0.781 | 1e-163 |
| >gi|224113753|ref|XP_002316562.1| predicted protein [Populus trichocarpa] gi|222859627|gb|EEE97174.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 296/362 (81%), Positives = 326/362 (90%)
Query: 1 MVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAF 60
+VKELP +LQSLDLEAIGSVVTD DI KESKPSFYLKNI+PILL+N VVH +GFGNRLAF
Sbjct: 104 IVKELPKELQSLDLEAIGSVVTDADIGKESKPSFYLKNILPILLKNRVVHFVGFGNRLAF 163
Query: 61 DPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMK 120
DPIPFQLQ LRCRCNFHALQF+PKIQET ALL++RLRK+ HSGPLDHYL+GPYA+ ++
Sbjct: 164 DPIPFQLQTLRCRCNFHALQFSPKIQETVALLIQRLRKNAAHSGPLDHYLIGPYAEKNLQ 223
Query: 121 EKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTK 180
EK G + KASRYLA+HLRFEIDMVAHSLCE+GGGEEER+ELE YREIHFPAL LKKT K
Sbjct: 224 EKVGHAVKASRYLALHLRFEIDMVAHSLCEYGGGEEERKELEAYREIHFPALTLLKKTNK 283
Query: 181 LPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLV 240
LPSPA +R EGLCPLTPEEAVLMLAALGF+RKTH+F+AGA IYGG RL AL SLYP LV
Sbjct: 284 LPSPAMLREEGLCPLTPEEAVLMLAALGFSRKTHIFIAGANIYGGRSRLTALTSLYPNLV 343
Query: 241 TKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKM 300
TKE LLSATEL+PF NFSSQLAALDFI CTA++AFAMTDSGSQLSSLVSG+RIYYGGGKM
Sbjct: 344 TKEKLLSATELKPFMNFSSQLAALDFIACTASDAFAMTDSGSQLSSLVSGFRIYYGGGKM 403
Query: 301 PTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCP 360
PTIRPNKRRLA IF KN++IEWK+FEQRVRKAVRQTKH+ R K RSVYRYPRCKECMC
Sbjct: 404 PTIRPNKRRLADIFRKNNSIEWKIFEQRVRKAVRQTKHVLQRPKARSVYRYPRCKECMCL 463
Query: 361 TD 362
T+
Sbjct: 464 TE 465
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117960|ref|XP_002331523.1| predicted protein [Populus trichocarpa] gi|222873747|gb|EEF10878.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356520091|ref|XP_003528699.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297741763|emb|CBI32992.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359494826|ref|XP_002271717.2| PREDICTED: DUF246 domain-containing protein At1g04910-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356564474|ref|XP_003550479.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255554775|ref|XP_002518425.1| conserved hypothetical protein [Ricinus communis] gi|223542270|gb|EEF43812.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|357480375|ref|XP_003610473.1| hypothetical protein MTR_4g132590 [Medicago truncatula] gi|357497961|ref|XP_003619269.1| DUF246 domain-containing protein [Medicago truncatula] gi|355494284|gb|AES75487.1| DUF246 domain-containing protein [Medicago truncatula] gi|355511528|gb|AES92670.1| hypothetical protein MTR_4g132590 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449513539|ref|XP_004164352.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449455459|ref|XP_004145470.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| TAIR|locus:2027129 | 652 | AT1G62330 [Arabidopsis thalian | 1.0 | 0.555 | 0.721 | 6.3e-140 | |
| TAIR|locus:2008935 | 590 | AT1G11990 [Arabidopsis thalian | 0.660 | 0.405 | 0.698 | 1e-124 | |
| TAIR|locus:2029984 | 611 | AT1G29200 [Arabidopsis thalian | 0.980 | 0.581 | 0.540 | 1.4e-101 | |
| TAIR|locus:2121793 | 551 | RHS17 "root hair specific 17" | 0.533 | 0.350 | 0.406 | 1.1e-50 | |
| TAIR|locus:2049527 | 567 | AT2G01480 [Arabidopsis thalian | 0.657 | 0.419 | 0.353 | 6.8e-49 | |
| TAIR|locus:2130938 | 549 | AT4G16650 [Arabidopsis thalian | 0.618 | 0.408 | 0.357 | 2.2e-46 | |
| TAIR|locus:2006852 | 562 | AT1G14970 [Arabidopsis thalian | 0.660 | 0.425 | 0.348 | 4.9e-46 | |
| TAIR|locus:2121909 | 519 | AT4G24530 [Arabidopsis thalian | 0.947 | 0.660 | 0.325 | 9.1e-45 | |
| TAIR|locus:2168297 | 504 | AT5G65470 [Arabidopsis thalian | 0.953 | 0.684 | 0.316 | 1.2e-44 | |
| TAIR|locus:2014666 | 568 | AT1G35510 [Arabidopsis thalian | 0.618 | 0.394 | 0.341 | 1.8e-44 |
| TAIR|locus:2027129 AT1G62330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1369 (487.0 bits), Expect = 6.3e-140, P = 6.3e-140
Identities = 262/363 (72%), Positives = 297/363 (81%)
Query: 1 MVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAF 60
+VK+LP +LQSLDLEAIGSVVTD+D+ KE+KP FY+K+I+P+LL+N VVH LGFGNRLAF
Sbjct: 290 IVKKLPKELQSLDLEAIGSVVTDIDVMKEAKPGFYMKHILPLLLKNRVVHFLGFGNRLAF 349
Query: 61 DPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGP-YADSIM 119
DPIPF+LQRLRCRCNFHAL F PKIQETGA+L+RRLR H P+D YLVGP +A I+
Sbjct: 350 DPIPFELQRLRCRCNFHALNFVPKIQETGAILVRRLRDSGSHLAPVDPYLVGPKFASFIL 409
Query: 120 KEKRGQSAKASRYLAIHLRFEIDMVAHSLCXXXXXXXXXXXXXXXXXIHFPALAHLKKTT 179
+K G KAS+YLA+HLRFEIDMVAHSLC HFP LA+L KT
Sbjct: 410 DKKAGPLHKASKYLAVHLRFEIDMVAHSLCYFGGGDAEKAELDAYREKHFPTLANLTKTQ 469
Query: 180 KLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYL 239
K+PSP ++R+EGLCPL+PEEAVLMLA LGF+RKT VFVAGA IYGG +RL AL SLYP L
Sbjct: 470 KMPSPDDLRTEGLCPLSPEEAVLMLAGLGFSRKTRVFVAGANIYGGNKRLAALTSLYPNL 529
Query: 240 VTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGK 299
VTKEN+LS TELEPFKNFSSQLA LDFI C A++AFAMTDSGSQLSSLVSGYRIYYG GK
Sbjct: 530 VTKENVLSQTELEPFKNFSSQLAVLDFIACAASDAFAMTDSGSQLSSLVSGYRIYYGAGK 589
Query: 300 MPTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMC 359
MPTIRPNKRR + I +KN+TIEWKVFEQRVRK VRQTKH+ R GRSVYRYPRCKECMC
Sbjct: 590 MPTIRPNKRRFSDILLKNNTIEWKVFEQRVRKTVRQTKHVLVRPTGRSVYRYPRCKECMC 649
Query: 360 PTD 362
D
Sbjct: 650 NED 652
|
|
| TAIR|locus:2008935 AT1G11990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2029984 AT1G29200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121793 RHS17 "root hair specific 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2121909 AT4G24530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2168297 AT5G65470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2014666 AT1G35510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 362 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 4e-93 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 2e-71 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 3e-05 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 279 bits (717), Expect = 4e-93
Identities = 113/298 (37%), Positives = 152/298 (51%), Gaps = 76/298 (25%)
Query: 2 VKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFD 61
VK+LP +L S E +T +P S PS+YL+ ++P+L ++GV+ L F +RLA D
Sbjct: 68 VKKLPEELASKKPE-----ITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLAND 122
Query: 62 PIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKE 121
+P ++QRLRCR NFHAL+F P+I+E G L+ RLR+ G
Sbjct: 123 LLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGG-------------------- 162
Query: 122 KRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKL 181
+LA+HLRFE DM+A S C
Sbjct: 163 ---------PFLALHLRFEKDMLAFSGC-------------------------------- 181
Query: 182 PSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVT 241
G CPLTPEE L+L ALGF R T +++A +IYGG RRL L S++P L T
Sbjct: 182 ---------GKCPLTPEEVGLLLRALGFPRSTRIYLAAGEIYGGERRLDPLRSIFPNLYT 232
Query: 242 KENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGK 299
KE L +A EL PF SS+LAALD+I C ++ F T G + V+G+R Y G K
Sbjct: 233 KETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGG-NFAKAVAGHRRYLGHRK 289
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 87.26 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=315.75 Aligned_cols=219 Identities=41% Similarity=0.625 Sum_probs=151.5
Q ss_pred CCChhHHHhhhHHHHHhc------CeEEEeccCCCCCCCCCchhhhhhhhhhcccccccchhHHHHHHHHHHHHhcccCC
Q 018023 29 ESKPSFYLKNIIPILLRN------GVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGH 102 (362)
Q Consensus 29 ~s~~~~Y~~~ilP~L~~~------~Vi~l~~~~~rLa~~~~p~~iQrLRCrvnf~ALrF~p~I~~lg~~LV~Rlr~~~~~ 102 (362)
++.+.+|+++++|.+.++ +|+.|.++...+..+..+.++|| +|+|+++|+++|+++|++++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~--- 193 (351)
T PF10250_consen 125 WSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDLQR--------YLRFSPEIRELADKFIKRLLAG--- 193 (351)
T ss_dssp E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGGGG--------G--B-HHHHHHHHHHHHHH------
T ss_pred cCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccceE--------EEecCHHHHHHHHHHHHHhhcc---
Confidence 788999999999999987 99999999999998888999988 9999999999999999999822
Q ss_pred CCCCCcccCCCccchhhhhhhcccccCCceEEEeechhhhhHhhccCCCCCChHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 018023 103 SGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLP 182 (362)
Q Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~yiAlHLRfE~DMlA~sgC~~g~~~~E~~eL~~~R~~~~~~~~~~~~~~~~i 182 (362)
.++|||+|||+|+|| +++|.+++ +...|+.+|.. ..+.+
T Consensus 194 --------------------------~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~----------~~~~~ 232 (351)
T PF10250_consen 194 --------------------------GGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW----------GKKSI 232 (351)
T ss_dssp ---------------------------SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH-----------GGGT
T ss_pred --------------------------cCceEEEeecccCch--HhhcccCC---chHHHHHhHhh----------ccccc
Confidence 248999999999999 89999954 77788888853 12234
Q ss_pred ChhhhhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEeeccccCccccchhHHhhCCCcccccccCCccccccccccccccc
Q 018023 183 SPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLA 262 (362)
Q Consensus 183 ~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~s~eEL~~f~~~ss~~A 262 (362)
.+...+..|.||++|++++.+++++|+.+.|.||||++++|||.+.|++|++.||++++|+++.+.+|+++|.+ +++|
T Consensus 233 ~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a 310 (351)
T PF10250_consen 233 NPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLA 310 (351)
T ss_dssp T-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------S--H
T ss_pred cchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchh
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999996 9999
Q ss_pred hhhheeeccCceeeecCCCCchhhhhhhccccccCCCCcc
Q 018023 263 ALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPT 302 (362)
Q Consensus 263 ALDy~Vc~~SDvFv~t~~G~nma~~V~GhR~y~G~~~~kT 302 (362)
+||++||++||+||+|. ||+|+..|+++|.|.|..++||
T Consensus 311 ~vD~~i~~~s~~Figt~-~Stfs~~i~~~R~~~g~~~~~~ 349 (351)
T PF10250_consen 311 MVDQEICSRSDVFIGTC-GSTFSSNIARERHYRGKPKRKS 349 (351)
T ss_dssp HHHHHHHHHSSEEEE-T-T-HHHHHHHHHHHHSSSS---E
T ss_pred HHHHHHHhcCCEEEecC-cchhHHHhhcccCcCCCCCCCC
Confidence 99999999999999997 7789999999999999876454
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 362 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 7e-04
Identities = 55/371 (14%), Positives = 102/371 (27%), Gaps = 110/371 (29%)
Query: 1 MVKELPNKLQSLDLEA---------IG-SVVT-DVDIPKESKPSFYLKNIIPILLRNGVV 49
+L L L G + V DV + + +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-----------CLSYKVQCKMDFKI 184
Query: 50 HLLGFGNRLAFDPIPFQLQRL--RCRCNFHALQFA----PKIQETGALLLRRLRKHEGHS 103
L N + + + LQ+L + N+ + + LRRL K + +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 104 GPLDHYLVGPYADSIMKEKRGQSAKA----------SRYLAIHLRFEIDMVAH-SLCEFG 152
L LV ++ + ++ A +R+ + H SL
Sbjct: 245 NCL---LV---LLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 153 GGEEERQELE---KYREIHFPALAHLKKTTKLPSP------AEIRSEGLC---------- 193
+ KY + L TT +P AE +GL
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 194 ------------PLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVT 241
L P E M L VF A I L+ ++ ++
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLS------VFPPSAHIPTIL-----LSLIWFDVIK 401
Query: 242 KENLLSATELEPF-------KNFSSQLAALDF-IGCTAANAFAMTDSGSQLSSLVSGYRI 293
+ ++ +L + K + + ++ + N +A+ S+V Y I
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR------SIVDHYNI 455
Query: 294 ---YYGGGKMP 301
+ +P
Sbjct: 456 PKTFDSDDLIP 466
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 98.66 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 98.44 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 94.24 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 84.65 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-08 Score=98.91 Aligned_cols=171 Identities=23% Similarity=0.223 Sum_probs=102.9
Q ss_pred cccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeechhhhhHhhccCCCCCChH
Q 018023 77 HALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEE 156 (362)
Q Consensus 77 ~ALrF~p~I~~lg~~LV~Rlr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~yiAlHLRfE~DMlA~sgC~~g~~~~ 156 (362)
..|+|++.|.+.|+..++..-..... -+++..|. +-...........+++|+|+|+|-+.=+.+...|.-.
T Consensus 217 r~l~~s~~l~~~a~~fi~~~L~~~~~---~~h~r~~~--dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps---- 287 (408)
T 4ap5_A 217 RSMVFARHLREVGDEFRSRHLNSTDD---ADRIPFQE--DWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPS---- 287 (408)
T ss_dssp HTCCBCHHHHHHHHHHHHHHHCCCTT---TTTCCCCS--SGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCC----
T ss_pred HHhhhhHHHHHHHHHHHHHHhCcccc---eeecccch--hHhhhhcccccccCCCccccccccccchhhhhccCCC----
Confidence 47999999999999998876432100 01111110 0001111223344689999999976323333333311
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCChhhhhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEeeccccCccccchhHHhhC
Q 018023 157 ERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLY 236 (362)
Q Consensus 157 E~~eL~~~R~~~~~~~~~~~~~~~~i~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~F 236 (362)
......+ +.-+++.. +-+.||||+-+ .+..+.-|++.+
T Consensus 288 ~~~~~~~------------------------------------i~~~~~~~---~~~~VyiATD~---~~~~~~~l~~~~ 325 (408)
T 4ap5_A 288 LEGAVRK------------------------------------IRSLMKTH---RLDKVFVATDA---VRKEYEELKKLL 325 (408)
T ss_dssp HHHHHHH------------------------------------HHHHHHHH---TCSCEEEEECC---CHHHHHHHHHHC
T ss_pred HHHHHHH------------------------------------HHHHHHhc---CCCEEEEeCCC---chhHHHHHHHhC
Confidence 1111111 11122222 23469999864 344577899999
Q ss_pred CCcccccccCCccccccccccccccchhhheeeccCceeeecCCCCchhhhhhhccccccCCCCccc
Q 018023 237 PYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTI 303 (362)
Q Consensus 237 Pnl~tKe~L~s~eEL~~f~~~ss~~AALDy~Vc~~SDvFv~t~~G~nma~~V~GhR~y~G~~~~kTi 303 (362)
|.++.-.. ..+++..+. ....|.||-+||.+||+||+|... +|+..|.=.|-+.|+....|.
T Consensus 326 ~~~~~~~~--~~~~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~S-tfS~~I~~eR~~~G~~~~~t~ 387 (408)
T 4ap5_A 326 PEMVRFEP--TWEELELYK--DGGVAIIDQWICAHARFFIGTSVS-TFSFRIHEEREILGLDPKTTY 387 (408)
T ss_dssp TTEECCCC--CHHHHHHHH--HHHHHHHHHHHHHTEEEEEBCTTC-HHHHHHHHHHHHHTBCGGGTS
T ss_pred CCcEEecC--cchhhhccC--cchhhHHHHHHHHhCCeeEeCCcC-chhHHHHHHHHhcCCCCCccc
Confidence 98764322 234444444 445788999999999999998744 799999999999998754443
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00