Citrus Sinensis ID: 018029

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNVCIIFFVLSWSMNFIVVLLPL
Secondary Structure (PSIPRED)
ccEEEcccccccEEEEEEEEEEEccccccccccccccEEEEEEccEEEEEcccccccccccccEEEEEEEccccEEEEEEEEccccccccccccEEEEcccccccccEEEEcccccccEEccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHcccccEEEEccEEEEEEcccccEEEEEEEccccHHHcccccccccccEEEEEEcccccccccccccccccEEEEEEEEEEcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHEEEEEEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEEEEEccccccccccccccEEEEEEcccEEEEEEEEcccccccccEEEEEccccccEEEEEEEEcccccccccEEEEEEEcccHccccccEEEccccccccEEEEEEEEccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHccEEEEcccEEEEEEcccccEEEEEEEHHHHHHHEccccccEcccEEEEEEcccccccccccccccccEEEEEEEHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccHHHEEHHHHEEEEEEEEEccccEEEEEccc
Coil and Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLiganlngtsdpyaiitcgsekrfssmvpgsrypmwgeefnfsvdelpvQIIVTIYDWDIIWKSTVLGSVIVTVesegqtgavwytldspsgqvclhiktiklpvnasrvmngyAGANARRrasldkqgptvvhqkpgplqtiFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKviipigdideiqrsqhafinPAITIILRmgagghgvpplgspdgrvryKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAhsssiggsrrQAKIVEEtvtkpekrqpfikeEVLVGIYNVCIIFFVLSWSMNFIVVLLPL
Flexible Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRahsssiggsrrqakiveetvtkpekrqpfikeevLVGIYNVCIIFFVLSWSMNFIVVLLPL
Low Complexity Region (SEG)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMngyaganarrraSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLeaekkekaesaLRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNVCIIFFVLSWSMNFIVVLLPL
Disordered region (IsUnstruct)
************AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGA********************GPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT*************************************************FIKEEVLVGIYNVCIIFFVLSWSMNFIVVLL**
Disordered Region (DISOPRED)
*************YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG***V***GSPDGRVRYKFASFWNRNHALRQLQR**************************************************FIKEEVLVGIYNVCIIFFVLSWSMNFIVVLLPL
Disordered Region (DISEMBL)
********QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAE***********************KIVEETVTKPEKRQPFIKEEVLVGIYNVCIIFFVLSWSMNFIVVLLPL
Disordered Region (DISPRO)
*********TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKE****************RRQAKIVEETVTKPEKRQPFIKEEVLVGIYNVCIIFFVLSWSMNFIVVLLPL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAxxxxxxxxxxxxxxxxxxxxxKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNVCIIFFVLSWSMNFIVVLLPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
Q9FGS8	1027	C2 and GRAM domain-contai	no	no	0.712	0.251	0.241	1e-14
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.787	0.279	0.241	5e-13
O42976	764	Uncharacterized membrane	yes	no	0.337	0.159	0.283	2e-10
O43374	803	Ras GTPase-activating pro	yes	no	0.243	0.109	0.325	4e-09
C9J798	803	Putative Ras GTPase-activ	yes	no	0.243	0.109	0.325	4e-09
Q5M7N9	889	Extended synaptotagmin-3	yes	no	0.348	0.141	0.313	5e-09
Q6PFQ7	802	Ras GTPase-activating pro	yes	no	0.276	0.124	0.291	6e-08
Q9UPW8	1703	Protein unc-13 homolog A	no	no	0.298	0.063	0.296	3e-07
Q4KUS2	1712	Protein unc-13 homolog A	no	no	0.298	0.063	0.296	3e-07
P27715	2155	Phorbol ester/diacylglyce	no	no	0.298	0.050	0.296	4e-07

>sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana GN=At5g50170 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 114/277 (41%), Gaps = 19/277 (6%)

Query: 5   KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
           +G       +++ + L+   NL         DPY + TC  + R SS+   ++ P W E 
Sbjct: 530 QGVKANGKGWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEV 589

Query: 65  FNFSVDELPVQII-VTIYDWDIIW-KSTVLGSVIV-----TVESEGQTGAVWYTLDSPSG 117
             F   E P  ++ V ++D+D  + +   LG   +     T +             + + 
Sbjct: 590 IEFDAMEEPPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQAS 649

Query: 118 QVCLHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEF 176
           Q  L ++      N    M  Y     +     L+ + P    QK    Q +F L  +EF
Sbjct: 650 QSKLQLRIFLENKNGVETMKDYLSKVEKEVGKKLNIRSP----QKNSAFQKLFGLPHEEF 705

Query: 177 VELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--- 233
           +   Y+C ++R     G++++SA  + F+SN F  + K      DID+IQ     F    
Sbjct: 706 LLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLG 765

Query: 234 NPAITIILRMGAG---GHGVPPLGSPDGRVRYKFASF 267
           +P + IIL+   G    HG       +GR+ + F SF
Sbjct: 766 SPLLLIILKKNRGLDAKHGAKS-QDDEGRLSFYFQSF 801

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 134/319 (42%), Gaps = 34/319 (10%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE 71
             +L+ + L+   +L   + +G  DPY + T   + R SS+      P W E F F    
Sbjct: 533 DGWLLTVALIEGVDLAAVDPSGHCDPYIVFTSNGKTRTSSIKFQKSNPQWNEIFEFDAMA 592

Query: 72  LPVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVC---LHIK 124
            P  ++ V ++D+D  +   V LG   V  V S       VW  L     Q C   LH++
Sbjct: 593 DPPSVLNVEVFDFDGPFDEAVSLGHAEVNFVRSNISDLADVWVPLQGKLAQACQSKLHLR 652

Query: 125 TIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCV 184
                     V+  Y     +    + K+      Q     Q +F L  +EF+   ++C 
Sbjct: 653 IFLDHTGGGDVVRDYLN---KMEKEVGKKINVRSPQTNSAFQKLFGLPQEEFLINDFTCH 709

Query: 185 IERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQ---RSQHAFINPAITIIL 241
           ++R     GR+++SA  + F+++ F  + K      DI+EIQ    +  +  +P + + L
Sbjct: 710 LKRKMPLQGRLFLSARIVGFYASIFGNKTKFFFLWEDIEEIQVLPPTLASMGSPIVVMTL 769

Query: 242 --------RMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKK 293
                   R+GA  H        +GR+++ F SF + N A + +    K     L  E+K
Sbjct: 770 RPNRGLDARIGAKTH------DEEGRLKFHFHSFVSFNVAQKTIMALWK--AKSLTPEQK 821

Query: 294 -----EKAESALRAHSSSI 307
                E++E  L++  S +
Sbjct: 822 VQAVEEESEQKLQSEESGL 840

Arabidopsis thaliana (taxid: 3702)

>sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 33/155 (21%)

Query: 136 MNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLP--DEFVELSYSCVIERSFLYHG 193
           ++GYA AN++R     +               IF +LP  D  ++  Y C ++R    HG
Sbjct: 185 LSGYAFANSKRNRDFHR---------------IFKVLPPEDHLID-DYGCALQRDIFLHG 228

Query: 194 RMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPL 253
           RMY+S  HICF+S+ F     ++IP+ +I  +++   A + P    I  + A        
Sbjct: 229 RMYLSESHICFNSSIFGWVTNIVIPVTEIVSVEKKSTAVVFPNAIQITTLHA-------- 280

Query: 254 GSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTML 288
                  RY FASF +R+   + +    KN H  L
Sbjct: 281 -------RYIFASFISRDTTYQLIIAIWKNTHPFL 308

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis.

Homo sapiens (taxid: 9606)

>sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway.

Homo sapiens (taxid: 9606)

>sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 11/137 (8%)

Query: 15  LIKLELLAAKNLIGAN------LNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           +++L L+ A++LI  +      + G SDPYA++  G++   S  +  +  P WGE + F 
Sbjct: 349 VLRLHLIEAEDLIPKDNYLKGIIRGKSDPYAVLRIGNQNFKSRTIKENLNPKWGEMYEFV 408

Query: 69  VDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL-DSPSGQVCLHIK 124
           V E+P Q + V +YD D   K   LGS+++ +E   Q   V  W+ L D PSG V L ++
Sbjct: 409 VHEVPGQDLEVDLYDEDPD-KDDFLGSLVIGLEGVMQDRVVDEWFPLSDVPSGSVHLRLE 467

Query: 125 TIKLPVNASRVMNGYAG 141
            + L   + ++     G
Sbjct: 468 WLSLLPKSEKLSEAKGG 484

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus musculus GN=Rasa4 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NG SDP+  +      + +S+V  S YP W E F+F +++ 
Sbjct: 132 ASRLRCAVLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVKKSCYPRWNETFDFELEKG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTL 112
             + ++V  +DWD++ ++  LG V V V+     Q    W+ L
Sbjct: 192 ASEALLVEAWDWDLVSRNDFLGKVAVNVQRLCSAQQEEGWFRL 234

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Isoform 2 activates the Ras pathway and promotes RANKL shedding by modulating the expression of MMP14.

Mus musculus (taxid: 10090)

>sp|Q9UPW8|UN13A_HUMAN Protein unc-13 homolog A OS=Homo sapiens GN=UNC13A PE=2 SV=4

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 678 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 737

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 738 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 797

Query: 119 VCLHI 123
           + LHI
Sbjct: 798 IRLHI 802

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses (By similarity). Also involved in secretory granule priming in insulin secretion (By similarity). Interacts with FBXO45 (via SRY domain); leading to the degradation of UNC13A by the proteasome.

Homo sapiens (taxid: 9606)

>sp|Q4KUS2|UN13A_MOUSE Protein unc-13 homolog A OS=Mus musculus GN=Unc13a PE=1 SV=3

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 687 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 746

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 747 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 806

Query: 119 VCLHI 123
           + LHI
Sbjct: 807 IRLHI 811

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Also involved in secretory granule priming in insulin secretion.

Mus musculus (taxid: 10090)

>sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 16   IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
            I L +L A+ LI  +  G SDPY     G  KR +  +     P+W E+F+F       +
Sbjct: 1159 ITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDR 1218

Query: 76   IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
            I V ++D D   KS +           LG  ++ V +      VWY L+      + SG 
Sbjct: 1219 IKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGA 1278

Query: 119  VCLHI 123
            + LHI
Sbjct: 1279 IRLHI 1283

May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
224121784	590	predicted protein [Populus trichocarpa]	0.941	0.577	0.856	1e-172
255582207	532	conserved hypothetical protein [Ricinus	0.933	0.635	0.868	1e-172
359478193	588	PREDICTED: C2 and GRAM domain-containing	0.939	0.578	0.838	1e-169
356519666	585	PREDICTED: C2 and GRAM domain-containing	0.939	0.581	0.812	1e-161
297820804	586	C2 domain-containing protein [Arabidopsi	0.933	0.576	0.788	1e-160
356500100	584	PREDICTED: C2 and GRAM domain-containing	0.939	0.582	0.809	1e-159
22331873	594	C2 domain and GRAM domain-containing pro	0.933	0.569	0.776	1e-159
449468844	598	PREDICTED: C2 and GRAM domain-containing	0.925	0.560	0.797	1e-159
449484724	598	PREDICTED: LOW QUALITY PROTEIN: C2 and G	0.925	0.560	0.797	1e-159
357475567	453	GRAM domain-containing protein [Medicago	0.933	0.746	0.796	1e-158

>gi|224121784|ref|XP_002330652.1| predicted protein [Populus trichocarpa] gi|222872256|gb|EEF09387.1| predicted protein [Populus trichocarpa]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 292/341 (85%), Positives = 306/341 (89%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGD Q NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 66  MGQLKGDSQANSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 125

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGA WYTLDSPSGQVC
Sbjct: 126 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAEWYTLDSPSGQVC 185

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIK+P N++R +NGYAGAN RRR S DKQGPTVVHQKPGPLQTIF+LLPDE VE S
Sbjct: 186 LHIKTIKVPANSARAVNGYAGANPRRRISSDKQGPTVVHQKPGPLQTIFSLLPDEVVEHS 245

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVSAW+ICFHSN FS+QMKV+IP GDIDEI+RSQHAFINPA+TII
Sbjct: 246 YSCALERSFLYHGRMYVSAWNICFHSNVFSKQMKVVIPFGDIDEIRRSQHAFINPAVTII 305

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKNY TMLEAEKKE+AESAL
Sbjct: 306 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRGLQRAAKNYRTMLEAEKKERAESAL 365

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
           RAHSSSI    RQA I E+ V K  K Q FIKEEVLVGIYN
Sbjct: 366 RAHSSSIRSGTRQANIPEDVVQKAGKLQAFIKEEVLVGIYN 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582207|ref|XP_002531896.1| conserved hypothetical protein [Ricinus communis] gi|223528463|gb|EEF30495.1| conserved hypothetical protein [Ricinus communis]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/341 (86%), Positives = 308/341 (90%), Gaps = 3/341 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQ NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 75  MGQLKGDPQGNSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 134

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKSTVLGSV V VESEGQTGAVWYTLDSPSGQVC
Sbjct: 135 WGEEFNFSVDELPVQIQVTIYDWDIIWKSTVLGSVTVPVESEGQTGAVWYTLDSPSGQVC 194

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKL VN+SR MNGYAGA+ARRR SLD QGPTVVHQKPGPLQTIFNL  DE VE S
Sbjct: 195 LHIKTIKLSVNSSRAMNGYAGASARRRISLDTQGPTVVHQKPGPLQTIFNLPADEIVEHS 254

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKVIIP+GDIDEI+RSQHAFINPAITII
Sbjct: 255 YSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPLGDIDEIRRSQHAFINPAITII 314

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AK YH MLE +KKE+AESAL
Sbjct: 315 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRALQRAAKTYHDMLEVQKKERAESAL 374

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
           RAHSSSI G     KI ++ V K EK QPFIKEEVLVGI+N
Sbjct: 375 RAHSSSIRGG---IKIPDDIVPKVEKHQPFIKEEVLVGIHN 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478193|ref|XP_002273984.2| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera] gi|296084286|emb|CBI24674.3| unnamed protein product [Vitis vinifera]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 286/341 (83%), Positives = 306/341 (89%), Gaps = 1/341 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQTNSAY+IKLELLAAKNLIGANLNG SDPYAIITCG EKRFSSMVPGSR PM
Sbjct: 65  MGQLKGDPQTNSAYVIKLELLAAKNLIGANLNGMSDPYAIITCGEEKRFSSMVPGSRNPM 124

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVD+LPV+I VTIYDWDIIWKST+LGSV V VE+EGQTGAVWY+LDS SGQVC
Sbjct: 125 WGEEFNFSVDDLPVKINVTIYDWDIIWKSTILGSVTVPVETEGQTGAVWYSLDSTSGQVC 184

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKLPVN+SRV+NGY+GAN RRR S DKQGPT+VHQKPGPLQTIFNL PDE VE S
Sbjct: 185 LHIKTIKLPVNSSRVLNGYSGANTRRRMSSDKQGPTLVHQKPGPLQTIFNLHPDEVVEHS 244

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVS WHICFHSN FS+QMKVIIP  DIDEI+RSQHAFINPAITII
Sbjct: 245 YSCALERSFLYHGRMYVSGWHICFHSNVFSKQMKVIIPFQDIDEIKRSQHAFINPAITII 304

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKN+HTMLEAEKKE AES L
Sbjct: 305 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRTLQRFAKNFHTMLEAEKKENAESEL 364

Query: 301 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
           RAHSSSI G R QAKI E+++    + QPF+KEE L+ IYN
Sbjct: 365 RAHSSSIKG-RSQAKISEDSLPTAIEFQPFVKEEALISIYN 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519666|ref|XP_003528491.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 278/342 (81%), Positives = 297/342 (86%), Gaps = 2/342 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q + AYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 63  MGQSKVDSQASLAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 122

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 123 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 182

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRR-ASLDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           LHIKTIKL  NASR+ NGY GAN RRR   L+ QGPTVVHQKPGPLQTIF L PDE V+ 
Sbjct: 183 LHIKTIKLSGNASRI-NGYGGANPRRRMPPLESQGPTVVHQKPGPLQTIFGLHPDEVVDH 241

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITI 239
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITI
Sbjct: 242 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 301

Query: 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESA 299
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHALR LQR AKN+H MLEAEKKE AES 
Sbjct: 302 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHALRNLQRAAKNFHEMLEAEKKENAESE 361

Query: 300 LRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
           LRAHSSS+ G++   K  EE++ K  + QPF+KEE LVGIYN
Sbjct: 362 LRAHSSSVRGNKILDKAPEESMPKTGRLQPFVKEEALVGIYN 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820804|ref|XP_002878285.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324123|gb|EFH54544.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 268/340 (78%), Positives = 296/340 (87%), Gaps = 2/340 (0%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD QTN+AY+IK+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 71  QMRGDTQTNAAYIIKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 130

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELPV+I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 131 EEFNFPTDELPVKISVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 190

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 191 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 249

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILR
Sbjct: 250 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 309

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKKE+AESALRA
Sbjct: 310 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAESALRA 369

Query: 303 HSSSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
           HSSS+ GG + Q K  E+T   P K Q FIKEEVLV IYN
Sbjct: 370 HSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYN 409

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500100|ref|XP_003518872.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/342 (80%), Positives = 297/342 (86%), Gaps = 2/342 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q +SAYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 61  MGQSKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 120

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 121 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 180

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRR-ASLDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           L IKTIKL  NASR+ NGY GAN RRR   L++Q PTVVHQKPGPLQTIF+L PDE V+ 
Sbjct: 181 LLIKTIKLSGNASRI-NGYGGANPRRRMPPLERQWPTVVHQKPGPLQTIFDLHPDEVVDH 239

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITI 239
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITI
Sbjct: 240 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 299

Query: 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESA 299
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHA R LQR AKN+H MLEAEKKE AES 
Sbjct: 300 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKKENAESE 359

Query: 300 LRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
           LRAHSSS+ G++   K  EE++ K  K QPF+KEE LVGIYN
Sbjct: 360 LRAHSSSVRGNKILDKAPEESMPKTGKLQPFVKEEALVGIYN 401

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331873|ref|NP_191525.2| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana] gi|17065130|gb|AAL32719.1| putative protein [Arabidopsis thaliana] gi|30725388|gb|AAP37716.1| At3g59660 [Arabidopsis thaliana] gi|332646431|gb|AEE79952.1| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 264/340 (77%), Positives = 294/340 (86%), Gaps = 2/340 (0%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 70  HLRGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 129

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 130 EEFNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 189

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 190 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 248

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILR
Sbjct: 249 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 308

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKKE+A+SALRA
Sbjct: 309 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAQSALRA 368

Query: 303 HSSSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
           HSSS+ GG + Q K  E+T   P K Q FIKEEVLV IYN
Sbjct: 369 HSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYN 408

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468844|ref|XP_004152131.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/335 (79%), Positives = 293/335 (87%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG 246
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDEI+R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 247 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSS 306
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKKEKAESALRAHSSS
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKAESALRAHSSS 381

Query: 307 IGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
           +  S  + KI  + + K +  Q F+KEEVL  I+N
Sbjct: 382 VRVSETKEKIPADDLPKSKNTQAFLKEEVLTSIHN 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484724|ref|XP_004156962.1| PREDICTED: LOW QUALITY PROTEIN: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/335 (79%), Positives = 292/335 (87%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG 246
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDEI+R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 247 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSS 306
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKKEKAESALRAHSSS
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKAESALRAHSSS 381

Query: 307 IGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
           +  S  + KI  + + K    Q F+KEEVL  I+N
Sbjct: 382 VRVSETKEKIPADDLPKSXNTQAFLKEEVLTSIHN 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475567|ref|XP_003608069.1| GRAM domain-containing protein [Medicago truncatula] gi|355509124|gb|AES90266.1| GRAM domain-containing protein [Medicago truncatula]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/339 (79%), Positives = 289/339 (85%), Gaps = 1/339 (0%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD Q  SAYLIKLELLAAKNLI ANLNGTSDPY IITCG+EKRFSSMVPGSR PMWG
Sbjct: 63  QSRGDSQAGSAYLIKLELLAAKNLIAANLNGTSDPYTIITCGNEKRFSSMVPGSRNPMWG 122

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVCLH
Sbjct: 123 EEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLH 182

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           IKT K+  N++R+ NGY GAN RRR  L+KQ PTVVHQKPGPLQTIF L PDE V+ SYS
Sbjct: 183 IKTEKMSANSARI-NGYGGANTRRRIPLEKQEPTVVHQKPGPLQTIFELHPDEVVDHSYS 241

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVS WHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITIILR
Sbjct: 242 CALERSFLYHGRMYVSTWHICFHSNVFSKQMKVLIPFEDIDEIRRSQHAFINPAITIILR 301

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 302
           MGAGGHGVPPLGSPDGRVRYKFASFWNRNHA+R LQR  KN+  MLE EKKE AES LRA
Sbjct: 302 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHAVRSLQRAVKNFREMLETEKKENAESELRA 361

Query: 303 HSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
           HSSS+  S    K+ E ++ K  KRQ FIKEE LVGIYN
Sbjct: 362 HSSSVRRSNIMDKVPETSMPKAGKRQTFIKEEALVGIYN 400

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
TAIR|locus:2097578	594	AT3G59660 "AT3G59660" [Arabido	0.928	0.565	0.733	4.7e-135
UNIPROTKB|Q5Z6I4	1037	OSJNBa0055N24.36 "Putative Osn	0.709	0.247	0.271	2.4e-20
UNIPROTKB|Q66VB0	1086	Os06g0607900 "Os06g0607900 pro	0.720	0.240	0.266	1.1e-16
TAIR|locus:2157707	1027	AT5G50170 "AT5G50170" [Arabido	0.295	0.104	0.315	6.9e-12
UNIPROTKB|Q69V64	354	P0556B08.10 "C2 domain-contain	0.317	0.324	0.347	5.3e-09
DICTYBASE|DDB_G0284461	623	DDB_G0284461 "leucine-rich rep	0.309	0.179	0.280	9.3e-09
UNIPROTKB|F1NF56	657	RASA4 "Uncharacterized protein	0.267	0.147	0.31	2.8e-08
DICTYBASE|DDB_G0272092	986	DDB_G0272092 "protein kinase,	0.298	0.109	0.305	2.3e-07
UNIPROTKB|F1N4Y6	793	RASA4 "Uncharacterized protein	0.287	0.131	0.305	2.9e-07
POMBASE|SPBC20F10.07	764	SPBC20F10.07 "GRAM domain prot	0.290	0.137	0.308	1.7e-06

TAIR|locus:2097578 AT3G59660 "AT3G59660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
 Identities = 248/338 (73%), Positives = 276/338 (81%)

Query:     5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWGEE
Sbjct:    72 RGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWGEE 131

Query:    65 FNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
             FNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+I 
Sbjct:   132 FNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLNIN 191

Query:   125 TIKLPVNASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCV 184
              IKLPVNA R +            +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYSC 
Sbjct:   192 AIKLPVNAPRAVTGYAGAGRRRV-TLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYSCA 250

Query:   185 IERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMG 244
             +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILRMG
Sbjct:   251 LERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILRMG 310

Query:   245 AGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLXXXXXXXXXXXLRAHS 304
             AGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH ML           LRAHS
Sbjct:   311 AGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAQSALRAHS 370

Query:   305 SSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYN 341
             SS+ GG + Q K  E+T   P K Q FIKEEVLV IYN
Sbjct:   371 SSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYN 408

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|Q5Z6I4 OSJNBa0055N24.36 "Putative Osnop" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 253 (94.1 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 75/276 (27%), Positives = 132/276 (47%)

Query:    12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE 71
             + +L+ + L+   NL     +G SDPY + TC  + + SS+   +  P W E F F   E
Sbjct:   554 NGWLLTVALIDGTNLAATKSSGYSDPYVVFTCNGKTKTSSIKFHTLEPRWNEIFEFDAME 613

Query:    72 LPVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIK 127
              P  ++ + +YD+D  +     LG   V  ++S   +   +W  L     Q C     ++
Sbjct:   614 DPPSVMKINVYDFDGPFDEVESLGHAEVNFLKSNLSELSDIWIPLKGKLAQACQSKLHLR 673

Query:   128 LPVNASRVMXXXXXXXXXXXXSLDKQ-GPTVVHQKP---GPLQTIFNLLPDEFVELSYSC 183
             + +N SR               ++K+ G  +  + P      Q IF+L P+EF+   ++C
Sbjct:   674 IILNNSR----GTEVMKDYLDKMEKEVGKKIAVRSPHTNSAFQKIFSLPPEEFLINDFTC 729

Query:   184 VIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQ---RSQHAFINPAITII 240
              ++R  L  GR+++S   I F++N F  + K      DI++IQ    + ++  +P++ II
Sbjct:   730 HLKRKMLTQGRLFLSPRIIGFYTNLFGHKTKFFFLWEDIEDIQVMPATLYSMGSPSLLII 789

Query:   241 LRMGAG---GHGVPPLGSPDGRVRYKFASFWNRNHA 273
             L  G G    HG   L + +GR+++ F SF + N A
Sbjct:   790 LHKGRGMDARHGAKQLDN-EGRLKFHFQSFVSFNVA 824

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

UNIPROTKB|Q66VB0 Os06g0607900 "Os06g0607900 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 232 (86.7 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 72/270 (26%), Positives = 126/270 (46%)

Query:    14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF-SVDEL 72
             +L+ + L+    +  +N     D YA+ TC ++++ SS+   +  P W E + F ++D+ 
Sbjct:   604 WLMTVALIEGTGITNSNSKELFDMYAVFTCNAKRKTSSVKFQTSEPKWNEIYEFDAMDDP 663

Query:    73 PVQIIVTIYDWDIIWKSTVLGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIKLPV 130
             P ++ V I+D +  +  + +G   V  ++S       VW  L+    Q       +++ +
Sbjct:   664 PSRMDVAIHDANGPFDQSPIGHAEVNFLKSNLSDLTDVWLPLEGKCDQTSNPKIHLRIFL 723

Query:   131 NASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFL 190
             N SR               + K+      Q     + +FNL P+EF+   ++C ++R   
Sbjct:   724 NNSRGTEVVMNYLAKMRKEVGKKINLRSAQTNAAFRKLFNLPPEEFLIDDFTCHLKRKMP 783

Query:   191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--NPAITIILRMGAG-- 246
               GR++ S   I F+SN F  + K      D+D+IQ         +P++TIILR G G  
Sbjct:   784 LQGRLFFSPRIIGFYSNIFGHKTKFFFLWDDVDDIQVIPPTLSIGSPSLTIILRKGRGLE 843

Query:   247 -GHGVPPLGSPDGRVRYKFASFWNRNHALR 275
               HG      P+GR++Y F SF + N A R
Sbjct:   844 AKHGAKGT-DPNGRLKYYFQSFVSFNDAHR 872

GO:0010152 "pollen maturation" evidence=IMP

TAIR|locus:2157707 AT5G50170 "AT5G50170" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
 Identities = 36/114 (31%), Positives = 56/114 (49%)

Query:   160 QKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPI 219
             QK    Q +F L  +EF+   Y+C ++R     G++++SA  + F+SN F  + K     
Sbjct:   689 QKNSAFQKLFGLPHEEFLLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLW 748

Query:   220 GDIDEIQRSQHAFIN---PAITIILRMGAG---GHGVPPLGSPDGRVRYKFASF 267
              DID+IQ     F +   P + IIL+   G    HG       +GR+ + F SF
Sbjct:   749 EDIDDIQVLPPTFASLGSPLLLIILKKNRGLDAKHGAKSQDD-EGRLSFYFQSF 801

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q69V64 P0556B08.10 "C2 domain-containing protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 159 (61.0 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 42/121 (34%), Positives = 63/121 (52%)

Query:   160 QKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPI 219
             Q     + +FNL P+EF+   ++C ++R     GR++ S   I F+SN F  + K     
Sbjct:    21 QTNAAFRKLFNLPPEEFLIDDFTCHLKRKMPLQGRLFFSPRIIGFYSNIFGHKTKFFFLW 80

Query:   220 GDIDEIQRSQHAFI--NPAITIILRMGAG---GHGVPPLGSPDGRVRYKFASFWNRNHAL 274
              D+D+IQ         +P++TIILR G G    HG      P+GR++Y F SF + N A 
Sbjct:    81 DDVDDIQVIPPTLSIGSPSLTIILRKGRGLEAKHGAKGT-DPNGRLKYYFQSFVSFNDAH 139

Query:   275 R 275
             R
Sbjct:   140 R 140

GO:0010152 "pollen maturation" evidence=IMP

DICTYBASE|DDB_G0284461 DDB_G0284461 "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)]

 Score = 161 (61.7 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 34/121 (28%), Positives = 63/121 (52%)

Query:    15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
             ++++ ++  ++L+ ++ NG SD YA +  G +K+ + ++  S  P WGE F   +  L  
Sbjct:     3 ILQVNVIEGRDLVASDSNGFSDCYATLILGQQKKKTKIIKKSLNPKWGETFLMRISPLDE 62

Query:    75 QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS-PS-------GQVCLHIKTI 126
              + V + DWD       +G   + + S   T AVWYTL + P+       G+VC+  + +
Sbjct:    63 TLHVLLQDWDQFSSDDFMGECFIDINSLDDT-AVWYTLSTRPNKPDDFVKGEVCIKARVV 121

Query:   127 K 127
             K
Sbjct:   122 K 122

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NF56 RASA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
 Identities = 31/100 (31%), Positives = 57/100 (57%)

Query:    16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
             ++  +L A++L   + NG SDP+  ++   + + S++V  S YP W E F F + + P +
Sbjct:   136 LRCTVLEARDLAKKDRNGASDPFVCVSYNGKTQESTVVKKSCYPRWNEAFEFELPDPPAE 195

Query:    76 -IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
              + V ++DWD++ K+  LG V+V+V+     G    W+ L
Sbjct:   196 KLCVEVWDWDLVSKNDFLGKVVVSVQGLQAAGHQEGWFRL 235

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

DICTYBASE|DDB_G0272092 DDB_G0272092 "protein kinase, TKL group" [Dictyostelium discoideum (taxid:44689)]

 Score = 151 (58.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 37/121 (30%), Positives = 62/121 (51%)

Query:    16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE--FNFSVDELP 73
             +++E+L  +NL+  + NG SDPY ++  G +K+ +  +  + +P W  +  F F +D   
Sbjct:     8 VRIEVLEGRNLVPMDSNGMSDPYGVVIVGDKKKKTKAIKHTLFPKWESDNCFEFDIDVNL 67

Query:    74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV----WYTL------DSPSGQVCLHI 123
             + I V +YDWD       +G   + V S+ Q   V    WYTL      D  SG++ L I
Sbjct:    68 LAITVEVYDWDRFSSDDRMGLTNIPV-SQIQEYIVDTTKWYTLQPMKPNDKVSGEIKLKI 126

Query:   124 K 124
             +
Sbjct:   127 R 127

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1N4Y6 RASA4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 33/108 (30%), Positives = 57/108 (52%)

Query:     8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF 67
             P T +  L +  +L A++L   + NG SDP+  +      + +S+V  S YP W E F F
Sbjct:   128 PGTRACRL-RCSVLEARDLAPKDRNGASDPFVRVRYNGRTQETSIVKKSCYPRWNETFEF 186

Query:    68 SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTL 112
              ++E   +++ V  +DWD++ ++  LG V+V V+     Q    W+ L
Sbjct:   187 ELEEGAAEVLCVEAWDWDLVSRNDFLGKVVVNVQRLWAAQREEGWFRL 234

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

POMBASE|SPBC20F10.07 SPBC20F10.07 "GRAM domain protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 142 (55.0 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 38/123 (30%), Positives = 59/123 (47%)

Query:   168 IFNLLP--DEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEI 225
             IF +LP  D  ++  Y C ++R    HGRMY+S  HICF+S+ F     ++IP+ +I  +
Sbjct:   202 IFKVLPPEDHLID-DYGCALQRDIFLHGRMYLSESHICFNSSIFGWVTNIVIPVTEIVSV 260

Query:   226 QRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYH 285
             ++   A + P    I  + A               RY FASF +R+   + +    KN H
Sbjct:   261 EKKSTAVVFPNAIQITTLHA---------------RYIFASFISRDTTYQLIIAIWKNTH 305

Query:   286 TML 288
               L
Sbjct:   306 PFL 308

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	362
cd13219	161	cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta	8e-77
cd00030	102	cd00030, C2, C2 domain	2e-21
cd13220	111	cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr	5e-19
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	1e-16
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	1e-15
pfam00168	85	pfam00168, C2, C2 domain	3e-15
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-14
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-12
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	5e-12
pfam02893	60	pfam02893, GRAM, GRAM domain	6e-12
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	6e-11
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	5e-10
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	1e-09
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	9e-09
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	2e-08
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	4e-08
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-07
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	2e-07
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	7e-07
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	7e-07
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-06
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-05
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	2e-05
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	2e-05
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	3e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-05
cd13349	135	cd13349, PH-GRAM1_TBC1D8, TBC1 domain family membe	8e-05
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	9e-05
cd13217	100	cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and	9e-05
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-04
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	3e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	3e-04
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	4e-04
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	6e-04
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	6e-04
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	9e-04
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	0.001
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	0.001
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	0.001
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	0.002
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	0.002
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	0.003
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	0.003
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	0.003

>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  233 bits (596), Expect = 8e-77
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 6/162 (3%)

Query: 144 ARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHIC 203
           ++    + K+      QK    Q +F L P+EF+   ++C ++R F   GR+++SA  I 
Sbjct: 1   SKMEKEVGKKINLRSPQKNSAFQKLFGLPPEEFLINDFTCALKRKFPLQGRLFLSARIIG 60

Query: 204 FHSNAFSRQMKVIIPIGDIDEIQRSQHAF--INPAITIILRMG---AGGHGVPPLGSPDG 258
           F+SN F  + K      DI+EIQ S  +    +P+I IILR G      HG  P   P+G
Sbjct: 61  FYSNLFGHKTKFFFLWEDIEEIQVSPPSLSVGSPSIVIILRKGRGLDARHGAKP-QDPEG 119

Query: 259 RVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 300
           R+++ F SF + NHA R +    KN     E +K+   ES L
Sbjct: 120 RLKFHFQSFVSFNHAFRTIMALWKNRSLSPEQKKQIVEESEL 161

C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 87.5 bits (217), Expect = 2e-21
 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           +++ ++ A+NL   +LNG SDPY  ++ G +++F + +V  +  P+W E F F V +   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 75  Q-IIVTIYDWDIIWKSTVLGSVIVTVES---EGQTGAVWYTL 112
             + V ++D D   K   LG V + +      G+ G +W  L
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 81.0 bits (201), Expect = 5e-19
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 17/118 (14%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228
            +L  DE +   YSC ++R  L  GR+Y+S  HICF+SN F  + K++IP  DI  I++ 
Sbjct: 4   KSLPDDERLIDDYSCALQRDILLQGRLYISENHICFYSNIFGWETKLVIPFKDITSIEKK 63

Query: 229 QHAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYH 285
           + A + P AI I                     +Y FASF +R+     + R   N  
Sbjct: 64  KTAGLFPNAIQIETLTE----------------KYFFASFLSRDSTFDLITRVWSNAL 105

The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 111

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 72.6 bits (179), Expect = 1e-16
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229
            L  +E +   YSC + R+    GR+Y+S + +CF SN   +  KV+IP+ DI  I++S 
Sbjct: 1   KLPEEEKLIADYSCYLSRTGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADITRIEKST 60

Length = 60

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 72.5 bits (178), Expect = 1e-15
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           +L A++L   + NGTSDP+  +    +   +S+V  S YP W E F F + E     + V
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
            ++DWD++ K+  LG V+ ++++  Q      W+ L
Sbjct: 66  EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRL 101

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDEL 72
          +++ +++AKNL   +LNG SDPY  ++ G +K+    + +V  +  P+W E F F V   
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 73 PVQ-IIVTIYDWDIIWKSTVLGSVI 96
           +  + + +YD+D   K   +G V 
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDE 71
            + +++++A+NL   +  G SDPY  ++   + +    + +V  +  P+W E F F V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 72  LPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES 101
             +  + + +YD D   +   +G V + +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSD 91

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 13/122 (10%)

Query: 15  LIKLELLAAKNLIGANLN------GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           ++++ ++ A++L+  +        G SDPY I+  G++   S ++  +  P W E +   
Sbjct: 2   VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAV 61

Query: 69  VDELP-VQIIVTIYDWDIIWKSTVLGSV---IVTVESEGQTGAVWYTL-DSPSGQVCLHI 123
           VDE+P  ++ + ++D D   K   LG +   + +VE +G     W  L D  SG++ L +
Sbjct: 62  VDEVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDE-WLPLEDVKSGRLHLKL 119

Query: 124 KT 125
           + 
Sbjct: 120 EW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ LI  +  GTSDPY  +  G  K+ +  +P +  P+W E+F+F       +
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS +           LG  I+ V +      VWY L+      + SG 
Sbjct: 63  IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGA 122

Query: 119 VCLHI 123
           + LHI
Sbjct: 123 IRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 171 LLPDEFVELSYSCVIERSF-LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229
           L P+E +   YSC ++R      GR+Y++   +CF S+ F     ++IP+ DI+ +++ +
Sbjct: 1   LPPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLTVLVIPLADIERVEKEK 60

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 59.0 bits (143), Expect = 6e-11
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 16  IKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           +++ ++ AK+L   +    G SDPYAI++ G+++  +  +P +  P W     F +    
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62

Query: 74  VQII-VTIYDWDIIWKSTVLGSV------IVTVESEGQTGAVWYTLDS 114
            Q++ + ++D D       LG        +      GQ+   W TL S
Sbjct: 63  NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDK-WITLKS 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 56.0 bits (136), Expect = 5e-10
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 15/100 (15%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           + +++++A+NL  A+ NG SDP+       EK F +  +  +  P+W E F     E+PV
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESF-----EVPV 55

Query: 75  ------QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQT 105
                  + V +YDWD   K  +LGS  +    +E E  T
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETT 95

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           L+  KNL   + NG SDPY     G+EK  S +   +  P W E+F+  + +   QI+ +
Sbjct: 6   LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQVCLHI 123
            ++D D   K   +G   + +      QT ++   L+   G + L +
Sbjct: 66  EVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSLLLLL 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 28/114 (24%)

Query: 21  LAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---- 72
           LA K+      NGT DP+A +T      ++ + + +   +  P + E F F +       
Sbjct: 11  LALKS------NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYE 64

Query: 73  ------------PVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
                         ++ V ++   ++     LG V + ++   Q G+   WY L
Sbjct: 65  KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFL 118

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+K+ ++   NL   +   +SDPY ++T G++K  + ++  +  P+W EE   SV     
Sbjct: 3   LLKVRVVRGTNLAVRDFT-SSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
            + + ++D D   K   +G   + +E
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLE 87

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGS-RYPMWGEEFNFSVDELPVQ-- 75
            L++AK L   +  G  DPY II C +++R S +  G  R P W E+F F+V E P    
Sbjct: 6   LLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTV-EYPGWGG 64

Query: 76  ---IIVTIYDWDIIWKSTVLGSVIVTVE 100
              +I+ I D D       +G   + ++
Sbjct: 65  DTKLILRIMDKDNFSDDDFIGEATIHLK 92

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSE---KRFSSMVPGSRYPMWGEEFNFSV- 69
           + + +L A+NL  ++  G SDPY  ++   G +   K+ +S+  G+  P++ E F+F V 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
            ++L  V +++T+ D D + ++ V+G V++  +S G+    W   L SP   + 
Sbjct: 76  AEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIA 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 17  KLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV-- 74
           +L +L AKNL      GT DPY  ++    +   +       P WGEEF F  D+ P   
Sbjct: 3   RLRILEAKNLP---SKGTRDPYCTVSLDQVEVARTKTVEKLNPFWGEEFVF--DDPPPDV 57

Query: 75  ---QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS--PSGQVC--LHIK 124
               +     D     +  V+G V ++    GQ    W+ L    P  +V   + ++
Sbjct: 58  TFFTLSFYNKDKRSKDRDIVIGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLR 114

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 47.5 bits (114), Expect = 7e-07
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSS---MVPGSRYPMWGEEFNFSVDE 71
           L+++ ++ A+NL   + NG SDPY  I  G +K+ +     +P +  P++G+ F      
Sbjct: 1   LVRVYVVRARNLQPKDPNGKSDPYLKIKLG-KKKINDRDNYIPNTLNPVFGKMFELEA-T 58

Query: 72  LPVQII--VTIYDWDIIWKSTVLGSVIVTVE 100
           LP   I  +++ D+D++    ++G  ++ +E
Sbjct: 59  LPGNSILKISVMDYDLLGSDDLIGETVIDLE 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 47.1 bits (113), Expect = 7e-07
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228
           F L   E +   Y   ++R    +G++Y+S  + CF S     + K+I+P+ DI+ +++ 
Sbjct: 7   FALPESEKLLAYYYAYLQRVLPVYGKLYISDNYFCFRSLLPGTRTKMILPLKDIENVEKE 66

Query: 229 Q-HAFINPAITIILRMGAGGH 248
           +   F    + I++R    GH
Sbjct: 67  KGFRFGYSGLVIVIR----GH 83

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWG 62
           P  N    I + ++ A+NL   ++NGTSDPY  +         EK+ + +   +  P++ 
Sbjct: 12  PTANR---ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFN 68

Query: 63  EEFNFSV--DEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
           E F F++  + L    +I+T+ D D + ++ ++G + +  +S G
Sbjct: 69  ESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 14  YLIKLELLAAKNLIGANLNGTSDPYAIIT-CGSEKRFSS--MVPGSRYPMWGEEFNFSV- 69
           +L  + ++ A+NL   + NG SDPY  +     ++R +    +  +  P W EEF   V 
Sbjct: 1   HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60

Query: 70  DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLDSPSGQVCLHI 123
              P+ I  T++D   + K  + G   + ++      +G    +W  LD   G++ L +
Sbjct: 61  AGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-TQGRLLLRV 118

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
           + +A+ L   +  G +DPY II C  E   S +   +  P +  +  F   +    I + 
Sbjct: 9   VHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQ 68

Query: 80  IYDWDIIWKSTVLGSVIVTVE 100
           +++ +++     LG   ++ +
Sbjct: 69  VWNSNLL-CDEFLGQATLSAD 88

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELP- 73
           +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F   E+P 
Sbjct: 21  ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSF---EVPF 77

Query: 74  -----VQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
                V +IVT+ D+D I K+  +G V++   + G
Sbjct: 78  EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 19/91 (20%)

Query: 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR---SQHAFINPAITIILRMGAGGHG 249
           G +Y++ + + F S       ++ +P+G I  +++   S     +  + I  +       
Sbjct: 19  GTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGSSSGENSYGLEITCK------- 71

Query: 250 VPPLGSPDGRVRYKFASFWNRNHALRQLQRT 280
                  D R   +FA F   +H+ R +   
Sbjct: 72  -------DMRN-LRFA-FKQEDHSRRDIFEL 93

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 10   TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFS 68
             NS YL  + L + +NL  ++ NG SDP+  +    +  + + +V  +  P+W EEF   
Sbjct: 1037 ENSGYL-TIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIE 1095

Query: 69   VD-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES 101
            V   +   + + + DWD   K+ +LG+  + +  
Sbjct: 1096 VLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129

Length = 1227

>gnl|CDD|241503 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 169 FNLLPDEFVELSYSCVIERSFL-YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR 227
           FN    E +   YSC   +  +   G +Y+S  H+CF+S    +++K++IP  ++ +++R
Sbjct: 19  FNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVEVQKLER 78

Query: 228 SQHAFINPAITIILR 242
           + + F+   I +  +
Sbjct: 79  TSNVFMTDTIRVTTQ 93

TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 135

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 41.3 bits (97), Expect = 9e-05
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 21 LAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
          L A+ L+    +GT+D Y II  G EK  +S+   +  P+W EE +F   ELP
Sbjct: 6  LQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSF---ELP 55

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 173 PDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF 232
            +E V        +      G +Y+S  H+CF+S     + K++I   ++ +I++S    
Sbjct: 1   EEELVTSYSCSYWKGKVPRQGWLYLSLNHLCFYSFLLGSESKLVIRWTELTDIEKS---- 56

Query: 233 INPAIT 238
            N  I 
Sbjct: 57  GNTTIK 62

TBC1D8, TBC1D8B, TBC1D9 and TBC1D9B may act as a GTPase-activating proteins for Rab family protein(s). They all contain an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 100

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 18/91 (19%)

Query: 11  NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR--------YPMWG 62
            S   +++E+L A+NL+  + NG+SDP+  +       F   VP  +        +P++ 
Sbjct: 13  ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLF-PDVPTPKTQVKKKTLFPLFD 71

Query: 63  EEFNFSVDELPVQ-------IIVTIYDWDII 86
           E F F+V   P Q       ++ T+ D+D++
Sbjct: 72  ESFEFNVP--PEQCSVEGALLLFTVKDYDLL 100

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 23  AKNLIGAN-LNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTI 80
           AKNL   +  N   D Y  +    E+ F +  V  S  P +GE+F F +      +   I
Sbjct: 9   AKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYI 68

Query: 81  YDWDIIWKSTVLGSVIVTVE 100
           YD D++ + +V+G V +  E
Sbjct: 69  YDRDVLRRDSVIGKVAIKKE 88

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQI-I 77
           ++  KNL   ++ G+SDPY I+   +E    ++ V  +  P WGEE+      LP     
Sbjct: 6   IVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTV---HLPPGFHT 62

Query: 78  VTIY--DWDIIWKSTVLGSVIVTVE 100
           V+ Y  D D + +  V+G V +T E
Sbjct: 63  VSFYVLDEDTLSRDDVIGKVSLTRE 87

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 20/78 (25%), Positives = 39/78 (50%)

Query: 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
          ++ A  L  A++ G SDP+ ++   + +  +  +  +  P W + F F + ++   + VT
Sbjct: 7  VIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVT 66

Query: 80 IYDWDIIWKSTVLGSVIV 97
          +YD D   K   LG V +
Sbjct: 67 VYDEDKDKKPEFLGKVAI 84

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 24  KNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD 82
           +NL   +  GTSDPY     G +  + S  +  +  P+W E+F   ++++   + + ++D
Sbjct: 10  RNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFD 69

Query: 83  WDIIWKSTVLGSVIVTVESE 102
           +D       +GS  V + + 
Sbjct: 70  YDRGLTDDFMGSAFVDLSTL 89

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 16 IKLELLAAKNL-IGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDELP 73
          +K+ ++AA++L +    +  +D +  +  GS    + +V  S  P+W  E F F VD+  
Sbjct: 1  LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 74 VQ---IIVTIYDWDIIWKSTVLGSVIV 97
          +Q   + + + D D    +  +G V +
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYI 87

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 23 AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQII 77
          AKNL  A       PY  +T G   + S +   +  P+W E F F V      EL +++ 
Sbjct: 9  AKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVK 68

Query: 78 VTIYDWDIIWKSTVLGSVIVTV 99
              D         LGS+ + +
Sbjct: 69 ----D---DKTGKSLGSLTLPL 83

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRY---PMWGEEFNFSV--DEL 72
           ++ A +L   ++ GTSDPY  +    +K+  F + V   R    P++ E F F V   EL
Sbjct: 22  IIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKV--HRKTLNPVFNETFTFKVPYSEL 79

Query: 73  PVQIIV-TIYDWDIIWKSTVLGSVIVT 98
             + +V ++YD+D   K  ++G V V 
Sbjct: 80  GNKTLVFSVYDFDRFSKHDLIGEVRVP 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + +E+  AKNLI  + NG SDPY  +          K+ +  +  +  P+W E F F + 
Sbjct: 15  LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74

Query: 70  -DELPVQIIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
             +   ++ + ++DWD   ++  +GS+   V E        WY L
Sbjct: 75  PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKL 119

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGE----EFNFSV 69
          + +++ ++ A+ L+G N+    DP   +  G +K+++S+  G+  P + E     F+ S 
Sbjct: 4  FQVRVRVIEARQLVGGNI----DPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESP 59

Query: 70 DELPVQIIV-TIYDWDIIWKSTVLGS 94
          DEL  +II  ++YD   +   T++GS
Sbjct: 60 DELFDKIIKISVYDSRSLRSDTLIGS 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 25  NLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DELPVQ-I 76
           NL   + NG SDP+  +    +     K  + +   +  P + EEF + +   +L  + +
Sbjct: 24  NLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTL 83

Query: 77  IVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY 110
            +T++D DI   +  +G + + + ++G+    W 
Sbjct: 84  EITVWDKDIGKSNDYIGGLQLGINAKGERLRHWL 117

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 20/111 (18%)

Query: 23  AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-VTIY 81
            ++L   N NG SDPY  ++ GS++  + +V  +  P W     F V +L   ++ +T++
Sbjct: 24  GRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVF 83

Query: 82  DWDIIWKSTVLG------SVIVTVESEG-------------QTGAVWYTLD 113
           D D       LG      + I+    E               TG V   LD
Sbjct: 84  DRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLD 134

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DEL 72
           +L A++L   +++G +DPY  +          K+ + +   +  P++ E F F +  +EL
Sbjct: 21  VLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80

Query: 73  P-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQV 119
             + +   + D D + K+ V+G +++  ++ G  G  W  + + P  Q+
Sbjct: 81  EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQI 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV---- 74
           E++ A++L+  +  G+S  Y  +    +K+ +   P    P+W E+  F+V +       
Sbjct: 5   EVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNL 64

Query: 75  QIIVTIY-DWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLD 113
            + V +Y D     + + LG V +   +     +     Y L+
Sbjct: 65  VLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE 107

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFN 66
           +A  + L ++ A+NL   ++ G SDPY  ++   E     K+ +S+   +  P + E   
Sbjct: 12  TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALV 71

Query: 67  F-----SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSP 115
           F     +VD   V +I+ + D+D +  + ++G   V   ++GQ    W   L +P
Sbjct: 72  FDVPPENVDN--VSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANP 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.87
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.85
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.83
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.83
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.82
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.82
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.81
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.81
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.81
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.8
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.8
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.8
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.8
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.79
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.79
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.79
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.79
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.78
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.78
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.78
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.78
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.78
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.77
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.76
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.76
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.76
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.76
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.75
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.75
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.75
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.75
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.75
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.75
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.75
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.75
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.74
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.74
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.74
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.74
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.73
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.73
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.73
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.73
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.73
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.73
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.73
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.72
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.72
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.72
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.72
KOG1032	590	consensus Uncharacterized conserved protein, conta	99.72
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.71
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.71
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.71
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.71
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.7
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.7
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.7
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.7
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.7
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.7
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.69
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.69
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.69
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.69
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.68
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.68
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.68
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.68
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.68
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.67
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.66
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.66
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.65
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.65
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.65
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.65
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.64
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.64
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.64
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.63
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.63
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.63
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.62
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.62
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.62
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.61
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.6
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.6
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.58
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.57
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.57
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.57
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.56
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.56
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.55
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.55
PLN03008	868	Phospholipase D delta	99.55
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.53
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.43
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.32
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.31
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.26
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.16
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.14
PLN02223	537	phosphoinositide phospholipase C	99.14
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.08
PLN02952	599	phosphoinositide phospholipase C	99.06
PLN02270	808	phospholipase D alpha	99.02
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.01
PLN02230	598	phosphoinositide phospholipase C 4	98.97
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.97
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.94
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.9
PLN02222	581	phosphoinositide phospholipase C 2	98.9
KOG1032	590	consensus Uncharacterized conserved protein, conta	98.89
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.88
PLN02228	567	Phosphoinositide phospholipase C	98.87
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.68
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.56
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.51
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.44
KOG4347	671	consensus GTPase-activating protein VRP [General f	98.42
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.37
PLN02352	758	phospholipase D epsilon	98.32
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.06
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.98
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.78
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.65
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.63
PLN02964	644	phosphatidylserine decarboxylase	97.47
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.32
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.32
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.22
PF14470	96	bPH_3: Bacterial PH domain	97.17
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.15
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	96.76
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.89
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.73
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	95.52
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	95.37
KOG3837	523	consensus Uncharacterized conserved protein, conta	95.35
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.34
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.27
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.21
KOG1452	442	consensus Predicted Rho GTPase-activating protein	94.85
PF15627	156	CEP76-C2: CEP76 C2 domain	94.77
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	94.49
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	93.2
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	93.01
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	91.81
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	90.47
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	90.25
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	89.42
PF06115	118	DUF956: Domain of unknown function (DUF956); Inter	88.6
PF08567	79	TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom	88.47
cd01201	108	Neurobeachin Neurobeachin Pleckstrin homology-like	88.38
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	87.72
PF11696	642	DUF3292: Protein of unknown function (DUF3292); In	85.05
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	84.67
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	81.19
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	81.07

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.87  E-value=2.3e-21  Score=160.71  Aligned_cols=111  Identities=19%  Similarity=0.280  Sum_probs=98.2

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccC-CCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~-t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI   92 (362)
                      |+|.|+|++|++|+..+ .|++||||++.+++++++|+++.+ +.||.|||+|.|.+.+....|.|+|||+|..++|++|
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            78999999999998887 799999999999999999999876 7999999999999986667899999999999999999


Q ss_pred             EEEEEEecc-C--CCcceEEEEccC-----CCCeeEEEEEE
Q 018029           93 GSVIVTVES-E--GQTGAVWYTLDS-----PSGQVCLHIKT  125 (362)
Q Consensus        93 G~~~i~L~~-l--~~~~~~w~~L~~-----~~G~i~l~l~~  125 (362)
                      |.+.+++.. +  +...+.|++|.+     +.|+|++.+.+
T Consensus        81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            999999964 4  455789999975     34888887763

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.85  E-value=3.5e-20  Score=152.26  Aligned_cols=111  Identities=24%  Similarity=0.363  Sum_probs=101.7

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfIG   93 (362)
                      +++|+|++|++|+.++..+.+||||++.+++.+.+|+++.+++||.|+|.|.|.+.+. .+.|.++|||++..+++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            4789999999999999999999999999999899999999999999999999998765 678999999999988999999


Q ss_pred             EEEEEeccC--CCcceEEEEccCCCCeeEEEEEE
Q 018029           94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKT  125 (362)
Q Consensus        94 ~~~i~L~~l--~~~~~~w~~L~~~~G~i~l~l~~  125 (362)
                      ++.++|.++  +...+.|++|.+..|++++.+++
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~  114 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTL  114 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEe
Confidence            999999987  56678999999878999888765

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.83  E-value=5.6e-20  Score=153.50  Aligned_cols=99  Identities=25%  Similarity=0.494  Sum_probs=90.0

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC------CCcEEEEEEEEcCCCCCC
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS   89 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~------~~~~L~~~V~D~d~~~~d   89 (362)
                      ++|+|++|++|+.++..|.+||||++.++..+.+|+++.+++||.|||.|.|.+..      ....|.++|||++..+++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            47999999999999999999999999999999999999999999999999999875      356799999999998889


Q ss_pred             ceeEEEEEEeccCC----CcceEEEEccC
Q 018029           90 TVLGSVIVTVESEG----QTGAVWYTLDS  114 (362)
Q Consensus        90 dfIG~~~i~L~~l~----~~~~~w~~L~~  114 (362)
                      ++||++.++|.++.    .....|++|.+
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~  109 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLES  109 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence            99999999999863    44679999975

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.83  E-value=3.7e-20  Score=157.94  Aligned_cols=111  Identities=24%  Similarity=0.422  Sum_probs=97.5

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI   92 (362)
                      -|.|.|.|++|.+|..+|..++|||||++.+++++.+|+++.+++||.|||.|.|.+.++...|+++|||+|.++.|||+
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~m   84 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFM   84 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCccccc
Confidence            58999999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeccCCCcceEEE-EccCCCCeeEEEE
Q 018029           93 GSVIVTVESEGQTGAVWY-TLDSPSGQVCLHI  123 (362)
Q Consensus        93 G~~~i~L~~l~~~~~~w~-~L~~~~G~i~l~l  123 (362)
                      |.|+|+|..+-.....|+ ......|....++
T Consensus        85 G~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v  116 (168)
T KOG1030|consen   85 GEATIPLKPLLEAQKMDYLKLELLTGTAIGKV  116 (168)
T ss_pred             ceeeeccHHHHHHhhhhccccccCCCcEeeEE
Confidence            999999999855555555 2233445544433

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.82  E-value=3.1e-19  Score=147.94  Aligned_cols=111  Identities=23%  Similarity=0.469  Sum_probs=98.0

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEECC-eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEE
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS   94 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~   94 (362)
                      |.|+|++|++|+..|..|.+||||++.++. ...+|+++.++.||.|||.|.|.+.+..+.|.|+|||++..+++++||+
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~   81 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGS   81 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEE
Confidence            789999999999999999999999999976 5679999999999999999999998767889999999999989999999


Q ss_pred             EEEEeccC--CCcceEEEEccCC-----CCeeEEEEEEe
Q 018029           95 VIVTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTI  126 (362)
Q Consensus        95 ~~i~L~~l--~~~~~~w~~L~~~-----~G~i~l~l~~~  126 (362)
                      +.+++.++  +...+.|++|.++     .|++++.+++.
T Consensus        82 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          82 AFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT  120 (121)
T ss_pred             EEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence            99999997  4667889999742     36777766653

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=1.9e-19  Score=150.23  Aligned_cols=99  Identities=21%  Similarity=0.362  Sum_probs=90.7

Q ss_pred             EEEEEEeeec---CCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC-----
Q 018029           16 IKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW-----   87 (362)
Q Consensus        16 L~V~Vi~A~~---L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~-----   87 (362)
                      |.|+|++|++   |+.+|..|.+||||++.++.++.||+++.+++||.|||+|.|.+.+....|.|+|||++..+     
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~   81 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV   81 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence            7899999999   88999999999999999999999999999999999999999999876778999999998863     


Q ss_pred             -CCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           88 -KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        88 -~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                       ++++||++.++|..+  +.....||+|.+
T Consensus        82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             CCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence             899999999999998  455678999974

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.81  E-value=3.7e-19  Score=148.47  Aligned_cols=112  Identities=24%  Similarity=0.427  Sum_probs=99.1

Q ss_pred             eEEEEEEEeeecCCCCCC--CCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCc
Q 018029           14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST   90 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~--~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~dd   90 (362)
                      |.|.|+|++|++|+.++.  .+.+||||++.++....+|++++++.||.|+|.|.|.+.+ ..+.|.|+|||++..++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            689999999999999998  8999999999999899999999999999999999999986 4778999999999988999


Q ss_pred             eeEEEEEEeccCC-----CcceEEEEccCC--------CCeeEEEEEE
Q 018029           91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT  125 (362)
Q Consensus        91 fIG~~~i~L~~l~-----~~~~~w~~L~~~--------~G~i~l~l~~  125 (362)
                      +||++.+++.++.     .....|+.|.++        .|++++++.|
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            9999999999873     335789999854        5777776654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.81  E-value=3e-19  Score=147.14  Aligned_cols=110  Identities=24%  Similarity=0.398  Sum_probs=95.3

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeecccc-CCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV   91 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~-~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~ddf   91 (362)
                      |.|.|+|++|++|+..+..+.+||||++.++....+|+++. +++||.|||.|.|.+.. ..+.|.|+|||++..+ +++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            67999999999999999999999999999998888999886 47999999999999985 3578999999999875 899


Q ss_pred             eEEEEEEeccC--CCcceEEEEccCC---CCeeEEEEE
Q 018029           92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK  124 (362)
Q Consensus        92 IG~~~i~L~~l--~~~~~~w~~L~~~---~G~i~l~l~  124 (362)
                      ||++.+++.++  +.....|++|..+   .|+++++++
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~  117 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT  117 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence            99999999986  4456899999753   366666654

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=9.1e-19  Score=144.30  Aligned_cols=111  Identities=23%  Similarity=0.465  Sum_probs=98.8

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG   93 (362)
                      |.|.|+|++|++|+.++..+.+||||++.++....+|+++.++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            57899999999999999999999999999998888999999999999999999999876788999999999888999999


Q ss_pred             EEEEEeccCCCcceEEEEccCC------CCeeEEEEE
Q 018029           94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK  124 (362)
Q Consensus        94 ~~~i~L~~l~~~~~~w~~L~~~------~G~i~l~l~  124 (362)
                      ++.+++.++..+...|+.|..+      .|++.+.+.
T Consensus        81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~  117 (119)
T cd08377          81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMD  117 (119)
T ss_pred             EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEE
Confidence            9999999997667899999742      355555544

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=4.4e-19  Score=148.32  Aligned_cols=111  Identities=21%  Similarity=0.359  Sum_probs=95.4

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC----CcEEEEEEEEcCCCC-CC
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS   89 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~----~~~L~~~V~D~d~~~-~d   89 (362)
                      .|.|+|++|++|++.+..|.+||||++.++++.++|+++.++.||.|||.|.|.+.+.    ...|.|+|||++..+ ++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            3789999999999999999999999999999999999999999999999999998743    357999999999876 79


Q ss_pred             ceeEEEEEEeccCC---CcceEEEEccCC------CCeeEEEEEE
Q 018029           90 TVLGSVIVTVESEG---QTGAVWYTLDSP------SGQVCLHIKT  125 (362)
Q Consensus        90 dfIG~~~i~L~~l~---~~~~~w~~L~~~------~G~i~l~l~~  125 (362)
                      ++||++.+++.++.   .....||+|..+      .|++++.+.+
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  125 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI  125 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence            99999999999873   456789999853      4666665543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.80  E-value=7.9e-19  Score=145.71  Aligned_cols=109  Identities=27%  Similarity=0.440  Sum_probs=94.5

Q ss_pred             EEEEEEeeecCCCCC-CCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 018029           16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG   93 (362)
                      |.|+|++|++|+.++ ..|.+||||.+.++.. ..+|+++.+++||.|||+|.|.+.+....|.|.|||++..+++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            679999999999874 4678999999999765 56999999999999999999999876678999999999999999999


Q ss_pred             EEEEEeccC--CCcceEEEEccCC------CCeeEEEEE
Q 018029           94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK  124 (362)
Q Consensus        94 ~~~i~L~~l--~~~~~~w~~L~~~------~G~i~l~l~  124 (362)
                      .+.++++++  +...+.|++|.+.      .|++++.+.
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR  120 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence            999999998  4556889999863      477766654

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.80  E-value=9.3e-19  Score=144.60  Aligned_cols=111  Identities=23%  Similarity=0.377  Sum_probs=96.4

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~dd   90 (362)
                      .|.|+|++|++|+..+..|.+||||++.+.   ....+|+++.++.||.|||+|.|.+... ...|.|+|||+|.. +++
T Consensus         1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~   79 (119)
T cd04036           1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD   79 (119)
T ss_pred             CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence            378999999999999989999999999985   3567999999999999999999998753 45799999999988 899


Q ss_pred             eeEEEEEEeccC--CCcceEEEEccC-CCCeeEEEEEEe
Q 018029           91 VLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKTI  126 (362)
Q Consensus        91 fIG~~~i~L~~l--~~~~~~w~~L~~-~~G~i~l~l~~~  126 (362)
                      +||++.+++.++  +.....|++|.+ +.|++++++.++
T Consensus        80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~  118 (119)
T cd04036          80 HLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE  118 (119)
T ss_pred             ccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence            999999999997  466789999986 368887777654

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.80  E-value=1.4e-18  Score=143.38  Aligned_cols=111  Identities=24%  Similarity=0.465  Sum_probs=98.1

Q ss_pred             eEEEEEEEeeecCCCCCC------CCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCC
Q 018029           14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII   86 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~------~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~   86 (362)
                      |.|.|+|++|++|+.++.      .|.+||||+++++....+|+++.++.||.|+|.|.|.+.+ ..+.|.++|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            579999999999998875      3689999999999988999999999999999999999974 467899999999987


Q ss_pred             CCCceeEEEEEEeccC--CCcceEEEEccC-CCCeeEEEEEE
Q 018029           87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT  125 (362)
Q Consensus        87 ~~ddfIG~~~i~L~~l--~~~~~~w~~L~~-~~G~i~l~l~~  125 (362)
                       ++++||.+.+++.++  .+..+.|++|.+ ..|++++++.|
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence             889999999999987  445689999986 57999887754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.79  E-value=1.5e-18  Score=144.92  Aligned_cols=110  Identities=23%  Similarity=0.421  Sum_probs=94.3

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEC--CeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCG--SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG   93 (362)
                      |.|+|++|++|+.  ..|.+||||++.++  ....+|+++.+++||.|+|.|.|.+....+.|.|+|||++..+++++||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            5799999999987  67899999999997  3567999999999999999999999766778999999999998999999


Q ss_pred             EEEEEeccC--CCcceEEEEccCC-------CCeeEEEEEEee
Q 018029           94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK  127 (362)
Q Consensus        94 ~~~i~L~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~  127 (362)
                      ++.+++.++  ......|++|.++       .|++.+++.+..
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~  121 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME  121 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence            999999997  4556889999754       366666666543

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.79  E-value=3e-18  Score=145.15  Aligned_cols=115  Identities=23%  Similarity=0.414  Sum_probs=99.3

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS   89 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~d   89 (362)
                      ...|.|.|+|++|++|+..|..|.+||||++.++....+|+++.++.||.|||+|.|.+.+. ...|.|+|||++..+++
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d   91 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD   91 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence            44699999999999999999999999999999999999999999999999999999999754 56799999999998899


Q ss_pred             ceeEEEEEEeccCCC-------cceEEEEccC-CCCeeEEEEEE
Q 018029           90 TVLGSVIVTVESEGQ-------TGAVWYTLDS-PSGQVCLHIKT  125 (362)
Q Consensus        90 dfIG~~~i~L~~l~~-------~~~~w~~L~~-~~G~i~l~l~~  125 (362)
                      ++||++.+++.++..       ....|..|.. ..|++++.+.+
T Consensus        92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          92 DFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            999999999998621       2335666654 45898888764

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=2e-18  Score=148.58  Aligned_cols=112  Identities=17%  Similarity=0.339  Sum_probs=97.0

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccC-CCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCcee
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL   92 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~-t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfI   92 (362)
                      .|.|+|++|++|++++.+|.+||||++.++++..+|+++.+ ++||.|||.|.|.+.++ ...|.|+|||++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            37899999999999999999999999999999999999976 69999999999999754 46899999999988889999


Q ss_pred             EEEEEEeccCC------CcceEEEEccCCC------------CeeEEEEEEe
Q 018029           93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTI  126 (362)
Q Consensus        93 G~~~i~L~~l~------~~~~~w~~L~~~~------------G~i~l~l~~~  126 (362)
                      |++.++|.++.      ...++||+|..+.            |++++++.+.
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            99999999873      2358999998532            6677776655

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.79  E-value=4.7e-18  Score=141.99  Aligned_cols=113  Identities=16%  Similarity=0.310  Sum_probs=98.5

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI   92 (362)
                      ..+++|+|++|++|+..+..|.+||||++.++.+..+|+++.++.||.|+|.|.|.+......|.|+|||++.. ++++|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l   80 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL   80 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence            46899999999999999999999999999999999999999999999999999999887788999999999876 58999


Q ss_pred             EEEEEEeccCCCcceEEEEccC--------CCCeeEEEEEEe
Q 018029           93 GSVIVTVESEGQTGAVWYTLDS--------PSGQVCLHIKTI  126 (362)
Q Consensus        93 G~~~i~L~~l~~~~~~w~~L~~--------~~G~i~l~l~~~  126 (362)
                      |.+.+++.+.......|++|..        ..|.+.+++.+.
T Consensus        81 G~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~  122 (126)
T cd04046          81 GQATLSADPNDSQTLRTLPLRKRGRDAAGEVPGTISVKVTSS  122 (126)
T ss_pred             EEEEEecccCCCcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence            9999999988777778999952        236666555443

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.78  E-value=1e-18  Score=143.33  Aligned_cols=100  Identities=17%  Similarity=0.256  Sum_probs=86.9

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC----eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~----~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D   82 (362)
                      .+..+.|+|+|++|++|+ .  .|.+||||++++..    .+++|++.++|+||.|||+|.|.++.   ....|.|+|||
T Consensus        10 ~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d   86 (118)
T cd08677          10 DKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC   86 (118)
T ss_pred             cCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence            456799999999999998 3  46699999999842    56799999999999999999999874   25679999999


Q ss_pred             cCCCCCCceeEEEEEEeccC--CCcceEEEEc
Q 018029           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L  112 (362)
                      +|.++++++||++.+++.++  +.+.++|..|
T Consensus        87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          87 CDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            99999999999999999975  6777888765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.78  E-value=3e-18  Score=143.40  Aligned_cols=110  Identities=29%  Similarity=0.533  Sum_probs=95.6

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC--------
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII--------   86 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~--------   86 (362)
                      .|.|+|++|++|+.+|..|.+||||++.++....+|+++.+++||.|+|.|.|.+......|.|+|||+|..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            589999999999999999999999999998888899999999999999999999876667899999999853        


Q ss_pred             ---CCCceeEEEEEEeccCCCcceEEEEccCCCC--eeEEEEE
Q 018029           87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSPSG--QVCLHIK  124 (362)
Q Consensus        87 ---~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G--~i~l~l~  124 (362)
                         +++++||.+.+++.++.+..+.|+.|.++++  .+++.|.
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~  124 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIR  124 (127)
T ss_pred             ccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEE
Confidence               4689999999999999777889999986443  2444443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.78  E-value=3e-18  Score=142.17  Aligned_cols=109  Identities=25%  Similarity=0.437  Sum_probs=94.7

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEECCee-EeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEE
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS   94 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~   94 (362)
                      |.|+|++|++|++++..|.+||||++.++... .+|+++.+++||.|||.|.|.+.+..+.|.|.|||++..+++++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            78999999999999999999999999997654 59999999999999999999998766899999999999999999999


Q ss_pred             EEEEeccCC---CcceEEEEccCC------CCeeEEEEE
Q 018029           95 VIVTVESEG---QTGAVWYTLDSP------SGQVCLHIK  124 (362)
Q Consensus        95 ~~i~L~~l~---~~~~~w~~L~~~------~G~i~l~l~  124 (362)
                      +.++++++.   ...+.|++|.+.      .|++++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            999998873   236899999752      466666553

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.78  E-value=4.8e-18  Score=141.07  Aligned_cols=100  Identities=29%  Similarity=0.579  Sum_probs=91.2

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfIG   93 (362)
                      .|.|+|++|++|+.++..+.+||||.+.++....+|+++.+++||.|+|+|.|.+... ...|.|+|||++..+++++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            3789999999999999999999999999998889999999999999999999999764 578999999999998999999


Q ss_pred             EEEEEeccC--CCcceEEEEccC
Q 018029           94 SVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        94 ~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      .+.+++.++  ....+.|+.|.+
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~  103 (123)
T cd04025          81 KVVFSIQTLQQAKQEEGWFRLLP  103 (123)
T ss_pred             EEEEEHHHcccCCCCCCEEECCC
Confidence            999999988  345688999975

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.78  E-value=2.6e-18  Score=142.82  Aligned_cols=99  Identities=22%  Similarity=0.350  Sum_probs=87.7

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEe-c--C-CCcEEEEEEEEc
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-D--E-LPVQIIVTIYDW   83 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v-~--~-~~~~L~~~V~D~   83 (362)
                      .+.|.|+|++|++|++++ .+.+||||++++.     ..+++|++++++.||.|||+|.|.+ .  + ....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            578999999999999999 9999999999995     3467999999999999999999987 3  1 356799999999


Q ss_pred             CCCCCCceeEEEEEEeccC--CCcceEEEEc
Q 018029           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L  112 (362)
                      |..+++++||++.++|.++  ......||+|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999998  4446889987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.77  E-value=4e-18  Score=141.01  Aligned_cols=99  Identities=16%  Similarity=0.340  Sum_probs=85.3

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEE-C------CeeEeeccccCCCCCeeccEEEEEecCC----CcEEEEEEEEc
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITC-G------SEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW   83 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-~------~~~~rT~~i~~t~nP~W~e~f~f~v~~~----~~~L~~~V~D~   83 (362)
                      .|+|+|++|++|+..+ .|.+||||++++ +      .++++|+++.+++||.|||+|.|.+...    ...|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3789999999999988 599999999997 2      2346899999999999999999999732    24599999999


Q ss_pred             CCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      |..+++++||++.+++.++  ++....|++|..
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~  112 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR  112 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence            9888899999999999998  556678999975

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.76  E-value=1.5e-17  Score=144.45  Aligned_cols=112  Identities=20%  Similarity=0.383  Sum_probs=94.9

Q ss_pred             eeEEEEEEEeeecCCCCC------------------------------CCCCCCcEEEEEECCee-EeeccccCCCCCee
Q 018029           13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW   61 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d------------------------------~~g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W   61 (362)
                      .|+|.|+|++|++|+.+|                              ..|.+||||++.+++.. .+|+++.++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            588999999999999987                              35679999999998655 59999999999999


Q ss_pred             ccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEeccC--CCcceEEEEccCC-------CCeeEEEEEE
Q 018029           62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKT  125 (362)
Q Consensus        62 ~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~-------~G~i~l~l~~  125 (362)
                      ||.|.|.+.+..+.|.|.|||+|..+ +++||++.++++++  +...+.|++|.+.       .|++++++.+
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            99999998877788999999999875 58999999999997  5567899999642       3566666654

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.76  E-value=7.3e-18  Score=141.80  Aligned_cols=110  Identities=23%  Similarity=0.387  Sum_probs=93.1

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEECCe-------eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-------~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~   87 (362)
                      .|.|+|++|++|+.++..|.+||||++.+...       ..+|+++.++.||.|||+|.|.+......|.|+|||++..+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            37899999999999999999999999998643       46899999999999999999999876778999999999998


Q ss_pred             CCceeEEEEEEeccCCC--------cceEEEEccCC------CCeeEEEEE
Q 018029           88 KSTVLGSVIVTVESEGQ--------TGAVWYTLDSP------SGQVCLHIK  124 (362)
Q Consensus        88 ~ddfIG~~~i~L~~l~~--------~~~~w~~L~~~------~G~i~l~l~  124 (362)
                      ++++||++.+++.++..        ....||+|.+.      .|++++.+.
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~  131 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMA  131 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEe
Confidence            99999999999998722        23589999852      355555544

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.76  E-value=2.2e-17  Score=137.52  Aligned_cols=113  Identities=25%  Similarity=0.472  Sum_probs=97.9

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEECC---eeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS   89 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~---~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~d   89 (362)
                      +.++|+|++|++|+..+..+.+||||++.+..   ...+|+++.+++||.|||+|.|.+... ...|.|+|||++..+++
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~   80 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH   80 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence            36899999999999999999999999998853   356999999999999999999999864 57899999999988899


Q ss_pred             ceeEEEEEEeccC-----CCcceEEEEccCCCCeeEEEEEEee
Q 018029           90 TVLGSVIVTVESE-----GQTGAVWYTLDSPSGQVCLHIKTIK  127 (362)
Q Consensus        90 dfIG~~~i~L~~l-----~~~~~~w~~L~~~~G~i~l~l~~~~  127 (362)
                      ++||++.++|.+.     +...+.|++|.+ .|++++.+.+..
T Consensus        81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~~  122 (126)
T cd04043          81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSMEG  122 (126)
T ss_pred             ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEee
Confidence            9999999999874     224678999986 799988887654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.76  E-value=1e-17  Score=138.98  Aligned_cols=104  Identities=23%  Similarity=0.441  Sum_probs=89.6

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeEE
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLGS   94 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~ddfIG~   94 (362)
                      |.|+|++|++|+.+    .+||||++.+++...+|+++.++.||.|||+|.|.+.. ....|.++|||+|.. ++++||+
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~   76 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG   76 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence            78999999999887    79999999999888999999999999999999999876 467899999999976 7899999


Q ss_pred             EEEEeccCCC-------cceEEEEccCCC-----CeeEEEEE
Q 018029           95 VIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIK  124 (362)
Q Consensus        95 ~~i~L~~l~~-------~~~~w~~L~~~~-----G~i~l~l~  124 (362)
                      +.+++.++..       ....||+|.+..     |++++.|.
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~  118 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVW  118 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEE
Confidence            9999999732       245899998643     66666554

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.75  E-value=1.2e-17  Score=142.73  Aligned_cols=103  Identities=16%  Similarity=0.287  Sum_probs=90.2

Q ss_pred             eeEEEEEEEeeecCCCCC-CCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEE-EcCC
Q 018029           13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI   85 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~-D~d~   85 (362)
                      .+.|.|+|++|+||++++ ..|.+||||++++.  +   .+++|+++++++||.|||+|.|.+......|.++|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            478999999999999874 67899999999993  2   367999999999999999999999865778999999 6888


Q ss_pred             CCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~  115 (362)
                      .+++++||++.++|.++  ......||+|.++
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            88899999999999998  4566799999874

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.75  E-value=6.8e-18  Score=140.88  Aligned_cols=103  Identities=21%  Similarity=0.368  Sum_probs=89.2

Q ss_pred             CceeEEEEEEEeeecCCCCCCC-CCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~-g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~   81 (362)
                      ...+.|.|+|++|++|++++.. |.+||||.+++.     ..+++|+++++++||.|||+|.|.+..   ....|.|+||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~   91 (125)
T cd08393          12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW   91 (125)
T ss_pred             CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            3457899999999999999976 899999999983     235699999999999999999999863   2467999999


Q ss_pred             EcCCCCCCceeEEEEEEeccC--CCcceEEEEcc
Q 018029           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~  113 (362)
                      |++..+++++||++.++|.++  ......||+|.
T Consensus        92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            999999999999999999997  44567899874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.75  E-value=1.4e-17  Score=138.58  Aligned_cols=103  Identities=22%  Similarity=0.418  Sum_probs=91.8

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~d   84 (362)
                      +..+.|.|+|++|++|+.++..|.+||||.+.+.   ....+|++++++.||.|+|+|.|.+...   ...|.++|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            4568999999999999999999999999999983   4467999999999999999999998742   467999999999


Q ss_pred             CCCCCceeEEEEEEeccC--CCcceEEEEcc
Q 018029           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~  113 (362)
                      ..+++++||++.++++++  ++..+.|+.|.
T Consensus        93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            998999999999999998  56778999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.75  E-value=3.9e-17  Score=137.38  Aligned_cols=113  Identities=19%  Similarity=0.336  Sum_probs=98.5

Q ss_pred             eeEEEEEEEeeecCCCCCCC----------CCCCcEEEEEECCee-EeeccccCCCCCeeccEEEEEecCCCcEEEEEEE
Q 018029           13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY   81 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~----------g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~   81 (362)
                      .|.|.|+|++|++|++.+..          |.+||||++.++.+. .+|+++.++.||.|||+|.|.+.+ ...|.|.||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence            37899999999999988863          679999999998765 589999999999999999999974 578999999


Q ss_pred             EcCCCCCCceeEEEEEEeccCC----CcceEEEEccCCCCeeEEEEEEee
Q 018029           82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTIK  127 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l~----~~~~~w~~L~~~~G~i~l~l~~~~  127 (362)
                      |++..+++++||++.++|.++.    ...+.|++|.+ .|++++++.+..
T Consensus        82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~l~l~~~~~~  130 (132)
T cd04014          82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-QGKLHVKIELKG  130 (132)
T ss_pred             eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-CcEEEEEEEEec
Confidence            9998888999999999999862    44689999995 799999888753

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=2e-17  Score=137.00  Aligned_cols=105  Identities=22%  Similarity=0.413  Sum_probs=89.0

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI   92 (362)
                      ++.|.|+|++|++|+.++   ..||||++++++++.+|.+.++ .||.|||.|.|.+.+....|.|+|||+|.. .||+|
T Consensus         1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~l   75 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLV   75 (127)
T ss_pred             CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCce
Confidence            368999999999997654   4589999999999999999987 499999999999988777799999999865 89999


Q ss_pred             EEEEEEeccC--C--CcceEEEEccC----CCCeeEEE
Q 018029           93 GSVIVTVESE--G--QTGAVWYTLDS----PSGQVCLH  122 (362)
Q Consensus        93 G~~~i~L~~l--~--~~~~~w~~L~~----~~G~i~l~  122 (362)
                      |++.++|.++  +  ....+||+|.+    +.|++...
T Consensus        76 G~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~~  113 (127)
T cd08394          76 GTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVGT  113 (127)
T ss_pred             EEEEEEhHHcccCCCCCCCccEecChHHhccCCeEecc
Confidence            9999999997  2  33478999986    55665443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.75  E-value=1.5e-17  Score=138.19  Aligned_cols=103  Identities=21%  Similarity=0.376  Sum_probs=89.7

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecC----CCcEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY   81 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~----~~~~L~~~V~   81 (362)
                      ...+.|.|+|++|++|+.++..+.+||||++.+..     ..++|++++++.||.|+|+|.|.+..    ....|.|+||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            45688999999999999999999999999999853     46699999999999999999998643    2567999999


Q ss_pred             EcCCCCCCceeEEEEEEeccC-CCcceEEEEcc
Q 018029           82 DWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l-~~~~~~w~~L~  113 (362)
                      |++..+++++||++.++|.+. ......||+|+
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~  125 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence            999988999999999999984 44567899984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.75  E-value=5.6e-17  Score=135.52  Aligned_cols=111  Identities=22%  Similarity=0.337  Sum_probs=92.5

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCee-EeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~dd   90 (362)
                      ...|.|+|++|++|+..   +.+||||.+.+++.. .+|++ .++.||.|||.|.|.+.+. ...+.|.|||++..++++
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            35699999999999875   478999999998644 58887 4689999999999987543 357999999999999999


Q ss_pred             eeEEEEEEeccC--CCcceEEEEccCC-------CCeeEEEEEEee
Q 018029           91 VLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK  127 (362)
Q Consensus        91 fIG~~~i~L~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~  127 (362)
                      +||++.++|..+  +...+.|++|.+.       .|++++.+.+..
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            999999999987  4556799999753       288888888764

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.75  E-value=4.1e-17  Score=137.92  Aligned_cols=114  Identities=19%  Similarity=0.416  Sum_probs=95.6

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC----------CCcEEEEEEEEc
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW   83 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~----------~~~~L~~~V~D~   83 (362)
                      +.|+|+|++|++|+++|..|.+||||++.+++...+|+++.+++||.|||.|.|.+..          ....|.++|||+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            4789999999999999999999999999999999999999999999999999997532          135699999999


Q ss_pred             CCCCCCceeEEEEE-EeccC-----CCcceEEEEccC---CCCeeEEEEEEee
Q 018029           84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTIK  127 (362)
Q Consensus        84 d~~~~ddfIG~~~i-~L~~l-----~~~~~~w~~L~~---~~G~i~l~l~~~~  127 (362)
                      |..+++++||++.+ ++..+     .....+|++|..   ..|+|.+.+++..
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~  133 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIE  133 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEE
Confidence            99999999999987 33333     245679999974   3478887777654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.74  E-value=1.7e-17  Score=138.45  Aligned_cols=103  Identities=17%  Similarity=0.294  Sum_probs=89.3

Q ss_pred             CceeEEEEEEEeeecCCCCCC-CCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~-~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~   81 (362)
                      +..+.|.|+|++|++|++++. .|.+||||++++.     ..+++|+++++++||.|||+|.|.+..   ....|.|+||
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            456889999999999998875 5889999999983     235699999999999999999999863   2557999999


Q ss_pred             EcCCCCCCceeEEEEEEeccC--CCcceEEEEcc
Q 018029           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~  113 (362)
                      |++..+++++||++.++|..+  ....+.|++|.
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            999999999999999999997  55678999983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.74  E-value=2.4e-17  Score=137.05  Aligned_cols=103  Identities=23%  Similarity=0.412  Sum_probs=91.0

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d   84 (362)
                      ...+.|.|+|++|++|+.++..|.+||||++.+.   ....+|++++++.||.|||.|.|.+..   ....|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d   92 (124)
T cd08385          13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            3457899999999999999999999999999984   346699999999999999999999864   2467999999999


Q ss_pred             CCCCCceeEEEEEEeccC--CCcceEEEEcc
Q 018029           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~  113 (362)
                      ..+++++||++.+++.++  +...++|+.|.
T Consensus        93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            998999999999999997  56778999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.74  E-value=2.1e-17  Score=133.53  Aligned_cols=98  Identities=26%  Similarity=0.330  Sum_probs=87.9

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfIG   93 (362)
                      .|.|+|++|++|+..+..+.+||||+++++++.++|+++.++.||.|||.|.|.+..+ ...|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            3789999999999999899999999999999999999999999999999999999863 6689999999876   78999


Q ss_pred             EEEEEeccC--C--CcceEEEEccCC
Q 018029           94 SVIVTVESE--G--QTGAVWYTLDSP  115 (362)
Q Consensus        94 ~~~i~L~~l--~--~~~~~w~~L~~~  115 (362)
                      ++.++|.++  .  ...+.||+|.++
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCCC
Confidence            999999987  2  246899999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.74  E-value=1.4e-17  Score=135.83  Aligned_cols=98  Identities=21%  Similarity=0.389  Sum_probs=87.7

Q ss_pred             EEEEEEeeecCCCCCC-CCCCCcEEEEEECCeeEeeccccCCCCCee-ccEEEEEecCC---CcEEEEEEEEcCCCCCCc
Q 018029           16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST   90 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~-~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W-~e~f~f~v~~~---~~~L~~~V~D~d~~~~dd   90 (362)
                      |.|+|++|++|+.++. .|.+||||++.++...++|+++.+++||.| +|+|.|.+...   .+.|.|+|||++..++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            5799999999999884 789999999999999999999999999999 99999999742   468999999999999999


Q ss_pred             eeEEEEEEeccCCC-----cceEEEEcc
Q 018029           91 VLGSVIVTVESEGQ-----TGAVWYTLD  113 (362)
Q Consensus        91 fIG~~~i~L~~l~~-----~~~~w~~L~  113 (362)
                      +||++.+++.++..     ....||+|.
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            99999999999833     367899985

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.73  E-value=1.5e-17  Score=135.74  Aligned_cols=99  Identities=18%  Similarity=0.294  Sum_probs=86.4

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecC----CCcEEEEEEEEcCC
Q 018029           14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI   85 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~-g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~----~~~~L~~~V~D~d~   85 (362)
                      |+|.|+|++|++|+..+.. |.+||||++.+.   ....+|+++++++||.|+|.|.|.+..    ....|.|+|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999988 999999999984   345799999999999999999998764    24679999999999


Q ss_pred             CCCCceeEEEEEEeccCCCcceEEEEcc
Q 018029           86 IWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l~~~~~~w~~L~  113 (362)
                      .+++++||++.+++.++. ....|+++.
T Consensus        81 ~~~dd~lG~~~i~l~~l~-~~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELI-EDRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHh-cCCCCCccc
Confidence            999999999999999985 335677764

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.73  E-value=3e-17  Score=140.76  Aligned_cols=99  Identities=21%  Similarity=0.384  Sum_probs=85.5

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEec---------------C-CC
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------E-LP   73 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~---------------~-~~   73 (362)
                      .|.|+|++|++|+.  .+|.+||||++.+..     ..++|+++.+++||.|||.|.|.+.               + ..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            37899999999988  578999999999964     5679999999999999999999984               1 12


Q ss_pred             cEEEEEEEEcCCCCCCceeEEEEEEeccCC---CcceEEEEccCC
Q 018029           74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP  115 (362)
Q Consensus        74 ~~L~~~V~D~d~~~~ddfIG~~~i~L~~l~---~~~~~w~~L~~~  115 (362)
                      ..|.|.|||++..++++|||++.+++..+.   .....||+|.++
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~  123 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR  123 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence            469999999998889999999999999984   357899999864

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.73  E-value=3.2e-17  Score=136.57  Aligned_cols=103  Identities=14%  Similarity=0.211  Sum_probs=89.8

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC------CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEE
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~------~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V   80 (362)
                      .+..+.|.|+|++|+||++++..+.+||||.+++-      ..+++|++.++++||.|||+|.|.+..   ....|.|+|
T Consensus        10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V   89 (124)
T cd08680          10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV   89 (124)
T ss_pred             CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence            45668899999999999999988999999999982      246799999999999999999999874   357899999


Q ss_pred             EEcCCCCCCceeEEEEEEeccC---CCcceEEEEc
Q 018029           81 YDWDIIWKSTVLGSVIVTVESE---GQTGAVWYTL  112 (362)
Q Consensus        81 ~D~d~~~~ddfIG~~~i~L~~l---~~~~~~w~~L  112 (362)
                      ||++..+++++||++.++|+++   .+....||.|
T Consensus        90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            9999988999999999999987   2346779876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.73  E-value=8e-17  Score=133.48  Aligned_cols=101  Identities=21%  Similarity=0.307  Sum_probs=91.5

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI   92 (362)
                      |.|.|+|++|++|++.+..+.+||||++.++. ...+|+++.++.||.|+|.|.|.+....+.|.|+|||++..+++++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            67999999999999999999999999999975 45799999999999999999999987778999999999999999999


Q ss_pred             EEEEEEeccC-CCcceEEEEccC
Q 018029           93 GSVIVTVESE-GQTGAVWYTLDS  114 (362)
Q Consensus        93 G~~~i~L~~l-~~~~~~w~~L~~  114 (362)
                      |++.+++.++ ....+.||.|..
T Consensus        81 G~~~~~l~~l~~~~~~~~~~~~~  103 (120)
T cd04045          81 GSVEINVSDLIKKNEDGKYVEYD  103 (120)
T ss_pred             eEEEEeHHHhhCCCCCceEEecC
Confidence            9999999997 556788888865

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.73  E-value=4e-17  Score=132.77  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=80.3

Q ss_pred             eEEEEEEEeeecCCCCCCC----CCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC--CCcEEEEEEEEcCCCC
Q 018029           14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIW   87 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~----g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~--~~~~L~~~V~D~d~~~   87 (362)
                      |+|.|+|++|++|++.+..    +.+||||+++++.+.++|+++++++||.|||.|.|.+.+  ....|.|+|||+|..+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            6899999999999988642    358999999999888999999999999999999999864  3457999999999999


Q ss_pred             CCceeEEEEEEeccC
Q 018029           88 KSTVLGSVIVTVESE  102 (362)
Q Consensus        88 ~ddfIG~~~i~L~~l  102 (362)
                      ++++||++.++|.++
T Consensus        81 ~dd~IG~~~l~L~~l   95 (108)
T cd04039          81 FNDYVATGSLSVQEL   95 (108)
T ss_pred             CCcceEEEEEEHHHH
Confidence            999999999999987

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.73  E-value=1e-16  Score=133.29  Aligned_cols=98  Identities=24%  Similarity=0.416  Sum_probs=86.9

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEC-CeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC--Ccee
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STVL   92 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~--ddfI   92 (362)
                      |+|+|++|++|+.++..+.+||||++.++ ...++|+++.+++||.|+|.|.|.+.. .+.|.|+|||++..++  +++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            78999999999999999999999999996 667899999999999999999999976 7789999999998765  5899


Q ss_pred             EEEEEEeccCC---CcceEEEEccC
Q 018029           93 GSVIVTVESEG---QTGAVWYTLDS  114 (362)
Q Consensus        93 G~~~i~L~~l~---~~~~~w~~L~~  114 (362)
                      |++.+++.++.   .....|++|..
T Consensus        81 G~~~i~l~~l~~~~~~~~~~~~l~~  105 (123)
T cd08382          81 GCVRIRANAVLPLKDTGYQRLDLRK  105 (123)
T ss_pred             eEEEEEHHHccccCCCccceeEeec
Confidence            99999999972   23467999954

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.73  E-value=3.6e-17  Score=137.10  Aligned_cols=103  Identities=18%  Similarity=0.376  Sum_probs=88.8

Q ss_pred             CceeEEEEEEEeeecCCCCCCC-CCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~-g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~   81 (362)
                      ...+.|.|+|++|+||++++.. |.+||||++.+.     ..+++|+++++++||.|||+|.|.+...   ...|.+.||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~   91 (128)
T cd08392          12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW   91 (128)
T ss_pred             CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence            4457999999999999999875 999999999983     3466999999999999999999998642   468999999


Q ss_pred             EcCCCCCCceeEEEEEEeccCC-----CcceEEEEcc
Q 018029           82 DWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD  113 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l~-----~~~~~w~~L~  113 (362)
                      |++..+++++||++.++|.++.     .....||+|.
T Consensus        92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             eCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            9999889999999999999872     2456899873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.72  E-value=6.9e-17  Score=133.84  Aligned_cols=113  Identities=20%  Similarity=0.374  Sum_probs=93.8

Q ss_pred             eEEEEEEEeeecCCCCC-CCCCCCcEEEEEECC--eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 018029           14 YLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~~--~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~dd   90 (362)
                      |.|.|+|++|++|+..+ ..+.+||||++.++.  ...+|+++.++.||.|+|.|.|.+.+..+.|.|+|||++..++++
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~   81 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK   81 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence            68999999999999765 356799999999977  678999999999999999999999866789999999999988999


Q ss_pred             eeEEEEEEeccCC--Ccce-EEEEccC---CCCeeEEEEEEe
Q 018029           91 VLGSVIVTVESEG--QTGA-VWYTLDS---PSGQVCLHIKTI  126 (362)
Q Consensus        91 fIG~~~i~L~~l~--~~~~-~w~~L~~---~~G~i~l~l~~~  126 (362)
                      +||.+.+++.++.  .... .|+.+..   ..|++++.+++.
T Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~  123 (124)
T cd04044          82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFF  123 (124)
T ss_pred             eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeC
Confidence            9999999999972  2222 3444442   347787777764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.72  E-value=4.5e-17  Score=134.76  Aligned_cols=100  Identities=30%  Similarity=0.457  Sum_probs=85.8

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecC--CCcEEEEEEEEcC
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD   84 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~--~~~~L~~~V~D~d   84 (362)
                      ..+.|.|+|++|++|++++ .|.+||||.+++.     ..+++|++++++.||.|||+|.|.+..  ....|.|+|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4578999999999999998 8899999999984     235689999999999999999999864  2456899999999


Q ss_pred             CCC-CCceeEEEEEEeccC--CCcceEEEEc
Q 018029           85 IIW-KSTVLGSVIVTVESE--GQTGAVWYTL  112 (362)
Q Consensus        85 ~~~-~ddfIG~~~i~L~~l--~~~~~~w~~L  112 (362)
                      ... ++++||++.+++.++  +...+.||.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            875 478999999999998  4446789976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.72  E-value=9.2e-17  Score=133.61  Aligned_cols=104  Identities=21%  Similarity=0.347  Sum_probs=90.6

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE---CCeeEeeccccCCCCCeeccEEEEEecC----CCcEEEEEEEEc
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW   83 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l---~~~~~rT~~i~~t~nP~W~e~f~f~v~~----~~~~L~~~V~D~   83 (362)
                      ...+.|.|+|++|++|+.++..+.+||||.+.+   +....+|++++++.||.|||+|.|.+..    ....|.++|||+
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~   92 (125)
T cd08386          13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence            446789999999999999999999999999998   3556799999999999999999997532    245799999999


Q ss_pred             CCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      +..+++++||++.+++.++  +...+.|+.|.+
T Consensus        93 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          93 DRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            9998999999999999997  566789999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.72  E-value=9.3e-17  Score=134.60  Aligned_cols=104  Identities=17%  Similarity=0.313  Sum_probs=88.0

Q ss_pred             CceeEEEEEEEeeecCCCCCCC-CCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~-g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~D   82 (362)
                      ...+.|.|+|++|++|+.++.. |.+||||++.+.   .++.+|+++++++||.|||+|.|. +..   ....|.++|||
T Consensus        13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d   92 (128)
T cd08388          13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS   92 (128)
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence            4568999999999999998876 899999999984   445699999999999999999994 432   23469999999


Q ss_pred             cCCCCCCceeEEEEEEeccC--C--CcceEEEEccC
Q 018029           83 WDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDS  114 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l--~--~~~~~w~~L~~  114 (362)
                      +|..+++++||++.++|.++  .  +....|++|++
T Consensus        93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          93 FDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             cCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            99999999999999999997  2  45667888764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=99.72  E-value=5.5e-18  Score=173.37  Aligned_cols=105  Identities=35%  Similarity=0.651  Sum_probs=92.2

Q ss_pred             ccceee--ccCCCcceeeeehhhhhhccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccC-cEEEE
Q 018029          164 PLQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-AITII  240 (362)
Q Consensus       164 ~f~~~F--~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~-~i~i~  240 (362)
                      .|...+  ++|+.+.|+++|+|++.+.+++|||||++..++||+|+++||++|++||+.+|..|+|.++++++| +|+|.
T Consensus       108 ~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i~  187 (590)
T KOG1032|consen  108 NLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEIT  187 (590)
T ss_pred             hhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEEe
Confidence            344444  388999999999999999999999999999999999999999999999999999999999999999 67776


Q ss_pred             EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHHHHHH
Q 018029          241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNY  284 (362)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~~~~~~  284 (362)
                      +                +..+|.|+||.+||.+|.+|.-+.+..
T Consensus       188 t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~  215 (590)
T KOG1032|consen  188 T----------------GTTKYIFVSLLSRDATYKLIKLLLHKF  215 (590)
T ss_pred             c----------------CCCcceeeecccCccHHHHHHHhhhhc
Confidence            3                346999999999999999885555433

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.71  E-value=9.2e-17  Score=133.55  Aligned_cols=102  Identities=26%  Similarity=0.455  Sum_probs=92.5

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccC-CCCCeeccEEEEEecCC----CcEEEEEEEEcCCCCC
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK   88 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~-t~nP~W~e~f~f~v~~~----~~~L~~~V~D~d~~~~   88 (362)
                      |.|.|+|++|++|+..+..+.+||||+++++...++|++..+ +.||.||+.|.|.+.+.    .+.|.|+|||.+..++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            578999999999999998999999999999988889998874 89999999999999865    4679999999999889


Q ss_pred             CceeEEEEEEeccC--CCcceEEEEccCC
Q 018029           89 STVLGSVIVTVESE--GQTGAVWYTLDSP  115 (362)
Q Consensus        89 ddfIG~~~i~L~~l--~~~~~~w~~L~~~  115 (362)
                      +++||++.+++.++  .+..+.|+.|.+.
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999997  5677899999874

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.71  E-value=8.6e-17  Score=134.10  Aligned_cols=103  Identities=19%  Similarity=0.319  Sum_probs=90.1

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D   82 (362)
                      +..+.|.|+|++|++|+.++..+.+||||++.+.     ...++|++++++.||.|||+|.|.+...   ...|.++|||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~   92 (127)
T cd04030          13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN   92 (127)
T ss_pred             CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence            4568899999999999999999999999999984     4567999999999999999999998632   4679999999


Q ss_pred             cCCC--CCCceeEEEEEEeccC--CCcceEEEEcc
Q 018029           83 WDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (362)
Q Consensus        83 ~d~~--~~ddfIG~~~i~L~~l--~~~~~~w~~L~  113 (362)
                      ++..  +++++||++.++|.++  ......||+|.
T Consensus        93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            9875  6899999999999997  45677899884

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.71  E-value=2e-17  Score=139.19  Aligned_cols=109  Identities=17%  Similarity=0.304  Sum_probs=94.5

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~   81 (362)
                      ....+.|.|+|++|++|+++|..|.+||||++.+.     ....+|+++.+++||.|||+|.|.+...   ...|.|+||
T Consensus         9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~   88 (133)
T cd08384           9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW   88 (133)
T ss_pred             cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence            35578999999999999999999999999999984     2356999999999999999999998642   467999999


Q ss_pred             EcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      |+|..+++++||++.+++...+....+|+.+....|+
T Consensus        89 d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~  125 (133)
T cd08384          89 DKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDK  125 (133)
T ss_pred             eCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCC
Confidence            9999889999999999999877778899988654444

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.71  E-value=1.3e-16  Score=132.24  Aligned_cols=102  Identities=20%  Similarity=0.371  Sum_probs=89.4

Q ss_pred             CceeEEEEEEEeeecCCCCC-CCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~   81 (362)
                      ...+.|.|+|++|++|+.++ ..+.+||||++++.     ....+|++++++.||.|||+|.|.+.+.   ...|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            45688999999999999998 78899999999883     1457999999999999999999998742   567999999


Q ss_pred             EcCCCCCCceeEEEEEEeccC--CCcceEEEEc
Q 018029           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L  112 (362)
                      |++..+++++||++.++|.++  +...+.||+|
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999988999999999999998  5667889986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.70  E-value=2.3e-16  Score=134.92  Aligned_cols=88  Identities=25%  Similarity=0.468  Sum_probs=84.2

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG   93 (362)
                      |.|.|+|++|++|+..+. +.+||||++.++++..+|++++++.||.|+|+|.|.+.++...|.|+|||++..+++++||
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            789999999999999887 8999999999999999999999999999999999999988889999999999999999999


Q ss_pred             EEEEEeccC
Q 018029           94 SVIVTVESE  102 (362)
Q Consensus        94 ~~~i~L~~l  102 (362)
                      ++.+++.++
T Consensus        81 ~a~i~l~~l   89 (145)
T cd04038          81 EAEIDLEPL   89 (145)
T ss_pred             EEEEEHHHh
Confidence            999999997

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.70  E-value=1.6e-16  Score=131.78  Aligned_cols=104  Identities=20%  Similarity=0.324  Sum_probs=90.2

Q ss_pred             CceeEEEEEEEeeecCCCCC-CCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 018029           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~   83 (362)
                      ...+.|.|+|++|++|+.++ ..+.+||||++++.   ....+|+++++++||.|+|.|.|.+...   ...|.|+|||+
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            34578999999999999998 68899999999983   4456899999999999999999998642   45799999999


Q ss_pred             CCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      +..+++++||++.++|.++  ......|++|++
T Consensus        91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            9988899999999999997  455679999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.70  E-value=1.1e-16  Score=133.18  Aligned_cols=110  Identities=23%  Similarity=0.415  Sum_probs=94.1

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEECC-eeEeecccc-CCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW   87 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-~~~rT~~i~-~t~nP~W~e~f~f~v~~~-----~~~L~~~V~D~d~~~   87 (362)
                      .|.|+|++|++|+..+..+.+||||+++++. ...+|++.. ++.||.|||.|.|.+.+.     ...|.|+|||++..+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            3789999999999999899999999999987 778999875 589999999999999765     578999999999888


Q ss_pred             CCceeEEEEEEeccC--CCc-----ceEEEEccCCCCeeEEEEE
Q 018029           88 KSTVLGSVIVTVESE--GQT-----GAVWYTLDSPSGQVCLHIK  124 (362)
Q Consensus        88 ~ddfIG~~~i~L~~l--~~~-----~~~w~~L~~~~G~i~l~l~  124 (362)
                      ++++||++.+++.++  ...     ...||.|..+.|+..+.|.
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~  124 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN  124 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence            899999999999997  222     3689999876676655543

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.70  E-value=3.5e-16  Score=130.64  Aligned_cols=107  Identities=20%  Similarity=0.331  Sum_probs=90.6

Q ss_pred             EEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCceeEEEE
Q 018029           20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI   96 (362)
Q Consensus        20 Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~~~ddfIG~~~   96 (362)
                      |++|++|+.  ..|.+||||++.++..+++|++++++.||.|+|+|.|.+..   ..+.|.|+|||++..+++++||++.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            789999988  68899999999999888999999999999999999999964   3678999999999998999999999


Q ss_pred             EEeccC--CCcceEEEEccCC-----CCeeEEEEEEeec
Q 018029           97 VTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTIKL  128 (362)
Q Consensus        97 i~L~~l--~~~~~~w~~L~~~-----~G~i~l~l~~~~~  128 (362)
                      +++.++  +.....|++|..+     .|++++.+.+.+.
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~  118 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP  118 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence            999997  4556789999642     2455555555443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.70  E-value=1.4e-16  Score=137.19  Aligned_cols=101  Identities=26%  Similarity=0.572  Sum_probs=88.8

Q ss_pred             CCCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----------------------------eeEeeccccCCCC
Q 018029            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----------------------------EKRFSSMVPGSRY   58 (362)
Q Consensus         8 ~~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----------------------------~~~rT~~i~~t~n   58 (362)
                      ...++.+.|.|+|++|++|.++|.+|.+||||++.+..                             ...+|+++.+++|
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            34567899999999999999999999999999999842                             2368999999999


Q ss_pred             CeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEeccC-CCcceEEEEc
Q 018029           59 PMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL  112 (362)
Q Consensus        59 P~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l-~~~~~~w~~L  112 (362)
                      |.|||+|.|.+.+. .+.|.|+|||++    +++||++.+++.++ +...+.||+|
T Consensus       102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L  153 (153)
T cd08676         102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL  153 (153)
T ss_pred             CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence            99999999999753 578999999997    78999999999998 4667899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.70  E-value=1.9e-16  Score=132.01  Aligned_cols=104  Identities=19%  Similarity=0.345  Sum_probs=89.7

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~D   82 (362)
                      ......|.|+|++|+||++++..|.+||||.+.+.   .++.+|++.++ .||.|||+|.|. +..   ....|.++|||
T Consensus        12 ~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~   90 (124)
T cd08389          12 DPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG   90 (124)
T ss_pred             CCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence            34567899999999999999999999999998762   45679998887 999999999998 653   35679999999


Q ss_pred             cCCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      ++..+++++||++.++|.++  ......|++|+|
T Consensus        91 ~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          91 VERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             CCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            99999999999999999998  556788999974

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.69  E-value=9.4e-17  Score=135.80  Aligned_cols=109  Identities=19%  Similarity=0.389  Sum_probs=93.7

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D   82 (362)
                      ...+.|.|+|++|++|+.+|..|.+||||++.+.  .   .+.+|+++++++||.|+|+|.|.+..   ....|.|+|||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d   91 (136)
T cd08404          12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence            3457899999999999999999999999999983  2   24589999999999999999999863   34579999999


Q ss_pred             cCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCee
Q 018029           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV  119 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~i  119 (362)
                      +|..+++++||++.+++...+....+|+.|....|+.
T Consensus        92 ~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~  128 (136)
T cd08404          92 SDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQ  128 (136)
T ss_pred             CCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCe
Confidence            9999999999999999998766778899987655654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.69  E-value=2.8e-16  Score=128.23  Aligned_cols=99  Identities=23%  Similarity=0.490  Sum_probs=86.6

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCC
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDII   86 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-----~~~L~~~V~D~d~~   86 (362)
                      ..+.|+|+|++|++|+    .|.+||||++++++++++|+++.++.||.|+|.|.|.+..+     ...|.|+|||++..
T Consensus         2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            4588999999999998    57899999999999999999999999999999999997532     35799999999998


Q ss_pred             CCCceeEEEEEEeccC--C---CcceEEEEccC
Q 018029           87 WKSTVLGSVIVTVESE--G---QTGAVWYTLDS  114 (362)
Q Consensus        87 ~~ddfIG~~~i~L~~l--~---~~~~~w~~L~~  114 (362)
                      +++++||++.++|+++  .   +....|++|..
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            8899999999999987  2   23577999853

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.69  E-value=6.8e-17  Score=136.77  Aligned_cols=109  Identities=21%  Similarity=0.267  Sum_probs=92.7

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---C--eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S--EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~--~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~   81 (362)
                      .+....|.|+|++|++|+..+..|.+||||++++.   .  .+.+|+++++++||.|||+|.|.+..   ....|.|+||
T Consensus        11 ~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~   90 (136)
T cd08406          11 LPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVA   90 (136)
T ss_pred             cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence            34567899999999999999999999999999983   2  25589999999999999999999873   3567999999


Q ss_pred             EcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      |+|..+++++||++.+.....+...++|..+....++
T Consensus        91 ~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~  127 (136)
T cd08406          91 ESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRK  127 (136)
T ss_pred             eCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCC
Confidence            9999999999999999887777777888887654443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.69  E-value=3.7e-16  Score=130.55  Aligned_cols=92  Identities=18%  Similarity=0.355  Sum_probs=82.4

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEec--CCCcEEEEEEEEcCCCCC
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIWK   88 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~--~~~~~L~~~V~D~d~~~~   88 (362)
                      ...+.|.|+|++|++|+ .+..|.+||||+|.+++...+|+++++++||.|||+|.|...  +..+.|.|+|||++..++
T Consensus        25 ~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~  103 (127)
T cd04032          25 RGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWD  103 (127)
T ss_pred             CCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCC
Confidence            34689999999999997 477889999999999988999999999999999999999753  346789999999999999


Q ss_pred             CceeEEEEEEeccCC
Q 018029           89 STVLGSVIVTVESEG  103 (362)
Q Consensus        89 ddfIG~~~i~L~~l~  103 (362)
                      +++||++.++|....
T Consensus       104 dd~IG~~~i~l~~~~  118 (127)
T cd04032         104 DDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCeeEEEEEEecCCc
Confidence            999999999998653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.68  E-value=2.7e-16  Score=137.11  Aligned_cols=104  Identities=21%  Similarity=0.279  Sum_probs=90.1

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEecC----CCcEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY   81 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v~~----~~~~L~~~V~   81 (362)
                      .+.+.|.|+|++|++|+..+..|.+||||++.+     +...++|+++.++.||.|||.|.|....    ....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            367999999999999999999999999999987     2456799999999999999999998532    2457999999


Q ss_pred             EcCCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      |++..+++++||++.+++.++  .+..+.|+.|.+
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            999998999999999999987  455688888854

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.68  E-value=3.2e-16  Score=134.74  Aligned_cols=98  Identities=21%  Similarity=0.349  Sum_probs=85.0

Q ss_pred             EEEEEEeeecCCCCCCCC--------------CCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEec--CCCcEEEEE
Q 018029           16 IKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVT   79 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g--------------~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~--~~~~~L~~~   79 (362)
                      |.|+|++|++|+.+|..+              .+||||++.+++.+.+|+++++++||.|||+|.|.+.  ...+.|.|+
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~   81 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ   81 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence            789999999999998554              6899999999999999999999999999999999875  335689999


Q ss_pred             EEEcCCCCCCceeEEEEEEeccC-CCcc--------eEEEEcc
Q 018029           80 IYDWDIIWKSTVLGSVIVTVESE-GQTG--------AVWYTLD  113 (362)
Q Consensus        80 V~D~d~~~~ddfIG~~~i~L~~l-~~~~--------~~w~~L~  113 (362)
                      |||+|..+++++||++.+++.++ ....        ..|+.|.
T Consensus        82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly  124 (151)
T cd04018          82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY  124 (151)
T ss_pred             EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence            99999999999999999999987 3333        3666664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.68  E-value=4.6e-16  Score=127.41  Aligned_cols=103  Identities=26%  Similarity=0.475  Sum_probs=91.0

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEECC-eeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~ddfIG   93 (362)
                      |+|+|++|++|+..+..+.+||||++.++. ...+|+++.++.+|.|+|+|.|.+.+ ..+.+.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            579999999999999889999999999964 45699999999999999999999975 4678999999999988999999


Q ss_pred             EEEEEeccC--CCcceEEEEccCCCCe
Q 018029           94 SVIVTVESE--GQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        94 ~~~i~L~~l--~~~~~~w~~L~~~~G~  118 (362)
                      ++.+++.++  +...+.|++|.+++|.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~g~~  107 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQGGG  107 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence            999999997  4567899999875554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.68  E-value=9.9e-17  Score=135.62  Aligned_cols=110  Identities=27%  Similarity=0.421  Sum_probs=93.8

Q ss_pred             CCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEE
Q 018029            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI   80 (362)
Q Consensus         9 ~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V   80 (362)
                      +.+..+.|.|+|++|++|+.++..|.+||||++.+.  .   ..++|+++++++||.|+|+|.|.+...   ...|.|+|
T Consensus        10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v   89 (136)
T cd08402          10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            446678999999999999999999999999999983  2   345899999999999999999998632   34799999


Q ss_pred             EEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        81 ~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      ||++..+++++||++.+++...+....+|+++....++
T Consensus        90 ~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~  127 (136)
T cd08402          90 LDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRR  127 (136)
T ss_pred             EeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCC
Confidence            99999999999999999998877777888888654443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.68  E-value=8e-17  Score=120.27  Aligned_cols=66  Identities=30%  Similarity=0.651  Sum_probs=48.8

Q ss_pred             ccceeeccCCCcceeeeehhhhhh-ccccceeEEEecceEEEeecCCCcee-EEEeecccceEEEEec
Q 018029          164 PLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ  229 (362)
Q Consensus       164 ~f~~~F~lp~~E~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~S~~~g~~~-k~~ip~~di~~i~k~~  229 (362)
                      .|++.|+||.+|.|+.+|.|++++ .++.+|+||+|.+++||+|+.++..+ +++|||.||.+|+|++
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~   69 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET   69 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence            589999999999999999999999 99999999999999999999999888 9999999999999974

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.67  E-value=2.9e-17  Score=157.26  Aligned_cols=102  Identities=25%  Similarity=0.503  Sum_probs=92.7

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEecC--CCcEEEEEEEEcCC
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI   85 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v~~--~~~~L~~~V~D~d~   85 (362)
                      ...|.|+|.+|+||.+||.+|.|||||.+++     +..+++|++++.++||+|||+|.|.+.+  .+++|.++|||||.
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence            4678899999999999999999999999998     2456799999999999999999999964  47789999999999


Q ss_pred             CCCCceeEEEEEEeccC-CCcceEEEEccC
Q 018029           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l-~~~~~~w~~L~~  114 (362)
                      .+++||+|...+.++++ ....+.||.|.+
T Consensus       259 TsRNDFMGslSFgisEl~K~p~~GWyKlLs  288 (683)
T KOG0696|consen  259 TSRNDFMGSLSFGISELQKAPVDGWYKLLS  288 (683)
T ss_pred             cccccccceecccHHHHhhcchhhHHHHhh
Confidence            99999999999999998 677899999975

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.66  E-value=5.5e-16  Score=131.42  Aligned_cols=99  Identities=20%  Similarity=0.411  Sum_probs=88.1

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEC----CeeEeeccccCCCCCeeccEEEEEecCC----------------CcE
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ   75 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~----~~~~rT~~i~~t~nP~W~e~f~f~v~~~----------------~~~   75 (362)
                      |.|+|++|++|+.+ ..|.+||||.++++    ...++|+++.++.+|.|+|.|.|.+...                ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999998 78999999999997    6778999999999999999999998643                457


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029           76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (362)
Q Consensus        76 L~~~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~  115 (362)
                      |.|+|||++..++++|||++.+++.++  ......|++|.++
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999888899999999999997  4457899999864

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.66  E-value=1.7e-16  Score=134.52  Aligned_cols=105  Identities=18%  Similarity=0.220  Sum_probs=89.2

Q ss_pred             CCceeEEEEEEEeeecCCCCCC--CCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEE
Q 018029           10 TNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT   79 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~--~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~   79 (362)
                      .+..+.|.|+|++|+||+.+|.  .+.+||||++++..     .+++|+++++++||+|||.|.|.++.   ....|.|+
T Consensus        11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~   90 (138)
T cd08407          11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE   90 (138)
T ss_pred             eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence            3566889999999999999983  35599999999842     35589999999999999999999974   25679999


Q ss_pred             EEEcCCCCCCceeEEEEEEeccCCCcceEEEEccC
Q 018029           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (362)
Q Consensus        80 V~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~  114 (362)
                      |||+|..+++++||++.+++...+...++|..+..
T Consensus        91 V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~  125 (138)
T cd08407          91 VLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLD  125 (138)
T ss_pred             EEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHh
Confidence            99999999999999999999887777778877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.65  E-value=3e-16  Score=132.72  Aligned_cols=108  Identities=26%  Similarity=0.410  Sum_probs=92.4

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D   82 (362)
                      +..+.|.|+|++|++|+.++..|.+||||++.+.     ....+|+++.++.||.|||.|.|.+..   ....|.|+|||
T Consensus        12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence            4568899999999999999999999999999882     234689999999999999999999862   24579999999


Q ss_pred             cCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      ++..+++++||++.+++.+.+...++|+.+....|+
T Consensus        92 ~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~  127 (136)
T cd08405          92 KDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQ  127 (136)
T ss_pred             CCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCC
Confidence            999999999999999999887777788887654444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.65  E-value=2.6e-15  Score=123.14  Aligned_cols=105  Identities=29%  Similarity=0.437  Sum_probs=85.6

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEECCee-EeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCce
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTV   91 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~~~ddf   91 (362)
                      |.|+|++|++|+..   |.+||||.+++++.. .+|+++.+ .||.|||+|.|.+.+   ....|.+.+||.+...++.+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            68999999999876   789999999998754 69999988 999999999999975   23568888899887666778


Q ss_pred             eEEEEEEeccCCCcceEEEEccCC------CCeeEEEEE
Q 018029           92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK  124 (362)
Q Consensus        92 IG~~~i~L~~l~~~~~~w~~L~~~------~G~i~l~l~  124 (362)
                      +|.+.+.....++..+.|++|.+.      .|++++.+.
T Consensus        78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~  116 (117)
T cd08383          78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR  116 (117)
T ss_pred             EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence            888776666667778999999863      467766654

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.65  E-value=5.3e-16  Score=130.85  Aligned_cols=109  Identities=23%  Similarity=0.407  Sum_probs=92.5

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~   81 (362)
                      .+..+.|.|+|++|++|++++..|.+||||++.+.  +   ...+|+++.+++||.|+|.|.|.+...   ...|.|+||
T Consensus        10 ~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~   89 (134)
T cd08403          10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVV   89 (134)
T ss_pred             cCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            35568999999999999999999999999999983  1   356899999999999999999998632   346999999


Q ss_pred             EcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      |++..+++++||++.+++...+.+...|+.+....|+
T Consensus        90 d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~  126 (134)
T cd08403          90 DYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRK  126 (134)
T ss_pred             ECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCC
Confidence            9999999999999999988766667789888655554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.65  E-value=6.3e-16  Score=130.72  Aligned_cols=109  Identities=22%  Similarity=0.436  Sum_probs=90.9

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecC--C-CcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~--~-~~~L~~~V~D   82 (362)
                      +..+.|.|+|++|++|+.+|..|.+||||.+.+.  .   ..++|++++++.||.|||+|.|.+..  . ...|.|+|||
T Consensus        11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence            4568899999999999999999999999999972  1   34689999999999999999999863  2 3469999999


Q ss_pred             cCCCCCCceeEEEEEEeccCCC-cceEEEEccCCCCee
Q 018029           83 WDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQV  119 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~~-~~~~w~~L~~~~G~i  119 (362)
                      +|..+++++||++.+.....++ ..++|+.|....|+.
T Consensus        91 ~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~  128 (135)
T cd08410          91 HNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTA  128 (135)
T ss_pred             CCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCE
Confidence            9999999999999877665544 467899987765654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.64  E-value=1.3e-15  Score=128.44  Aligned_cols=92  Identities=22%  Similarity=0.419  Sum_probs=82.2

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-------CeeEeeccccCCCCCeeccEEEEEecC-----CCcEEEEE
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVT   79 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-------~~~~rT~~i~~t~nP~W~e~f~f~v~~-----~~~~L~~~   79 (362)
                      ..+.|.|+|++|++|+.++..|.+||||++.+.       ...++|+++.+++||.|||+|.|.+..     ....|.|+
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            457899999999999999989999999999984       346799999999999999999999864     24579999


Q ss_pred             EEEcCCCCCCceeEEEEEEeccCC
Q 018029           80 IYDWDIIWKSTVLGSVIVTVESEG  103 (362)
Q Consensus        80 V~D~d~~~~ddfIG~~~i~L~~l~  103 (362)
                      |||++..+++++||++.++|.++.
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCC
Confidence            999999988999999999999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.64  E-value=1.5e-15  Score=125.70  Aligned_cols=96  Identities=16%  Similarity=0.242  Sum_probs=83.2

Q ss_pred             EEEeeecCCCCCCCCCCCcEEEEEECCe-------eEeeccccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCC----C
Q 018029           19 ELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----I   86 (362)
Q Consensus        19 ~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-------~~rT~~i~~t~nP~W~e~f~f~v~-~~~~~L~~~V~D~d~----~   86 (362)
                      -.++|++|+.++..|.+||||++.+...       ..+|+++.+++||.|+|+|.|.+. +..+.|.|+|||+|.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            3488999999999999999999999644       379999999999999999999865 446679999999997    7


Q ss_pred             CCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        87 ~~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      +++++||++.+++.++  ......|+.|.+
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            8999999999999998  456678888854

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.64  E-value=1.5e-15  Score=127.44  Aligned_cols=105  Identities=27%  Similarity=0.493  Sum_probs=92.1

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC--CcEEEEEEEEcCCC
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDII   86 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~--~~~L~~~V~D~d~~   86 (362)
                      +.|.|+|++|++|+..+..+.+||||.+.+.     ....+|+++.++.+|.|+|+|.|.+.+.  .+.|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            7899999999999999888999999999985     3567999999999999999999998743  56799999999988


Q ss_pred             CCCceeEEEEEEeccC-CCcceEEEEccC-CCCe
Q 018029           87 WKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ  118 (362)
Q Consensus        87 ~~ddfIG~~~i~L~~l-~~~~~~w~~L~~-~~G~  118 (362)
                      +++++||++.+++.++ ......||+|.. +.|+
T Consensus        93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~  126 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE  126 (131)
T ss_pred             CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence            8999999999999998 446788999975 4454

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.63  E-value=5.2e-15  Score=125.27  Aligned_cols=99  Identities=23%  Similarity=0.272  Sum_probs=83.3

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEEC-------------CeeEeeccccCCCCCee-ccEEEEEecCCCcEEEEEE
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-------------SEKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI   80 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-------------~~~~rT~~i~~t~nP~W-~e~f~f~v~~~~~~L~~~V   80 (362)
                      ++.|++++|++|+ ++..|++||||++++.             .+.++|+++.+++||.| ||.|.|.+.. .+.|.++|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            5789999999998 7889999999999983             13679999999999999 9999999864 56899999


Q ss_pred             EEcCCCCC---CceeEEEEEEeccCC-----CcceEEEEccCC
Q 018029           81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP  115 (362)
Q Consensus        81 ~D~d~~~~---ddfIG~~~i~L~~l~-----~~~~~w~~L~~~  115 (362)
                      ||++..++   +++||++.+++.++.     .....|++|...
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~  122 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR  122 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence            99875443   699999999999972     235679999853

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.63  E-value=2.9e-15  Score=124.81  Aligned_cols=89  Identities=24%  Similarity=0.492  Sum_probs=80.0

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEECCee--EeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV   91 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~--~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~ddf   91 (362)
                      +++|.|++|++|+.+|..|.+||||++.++...  .+|+++.+++||.|||+|.|.+.. ....|.|+|||+|..+++++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            478999999999999999999999999998654  478888999999999999998863 36789999999999999999


Q ss_pred             eEEEEEEeccCC
Q 018029           92 LGSVIVTVESEG  103 (362)
Q Consensus        92 IG~~~i~L~~l~  103 (362)
                      ||++.+++.+..
T Consensus        81 iG~~~i~l~~~~   92 (124)
T cd04037          81 IGETVIDLEDRF   92 (124)
T ss_pred             eEEEEEeecccc
Confidence            999999999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.63  E-value=1.5e-15  Score=127.49  Aligned_cols=106  Identities=21%  Similarity=0.310  Sum_probs=88.6

Q ss_pred             CCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCC-CCeeccEEEEEecCC--CcEEEEEE
Q 018029            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDEL--PVQIIVTI   80 (362)
Q Consensus         9 ~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~-nP~W~e~f~f~v~~~--~~~L~~~V   80 (362)
                      +.++.+.|+|+|++|++|++++..+.+||||++++-     ..+++|+++++++ +|.|||+|.|++...  ...|.++|
T Consensus         9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v   88 (135)
T cd08692           9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL   88 (135)
T ss_pred             ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence            457789999999999999998667778999999982     2466999999995 699999999999743  44688999


Q ss_pred             EEcCCCCCCceeEEEEEEeccC-CCcceEEEEccC
Q 018029           81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (362)
Q Consensus        81 ~D~d~~~~ddfIG~~~i~L~~l-~~~~~~w~~L~~  114 (362)
                      ||++..+++++||++.+..... +.+.++|.+...
T Consensus        89 ~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~  123 (135)
T cd08692          89 YSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIA  123 (135)
T ss_pred             EeCCCCcCCceEEEEEECCccCCchhhhhHHHHHh
Confidence            9999988999999999999875 445788888654

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.62  E-value=1.3e-14  Score=124.95  Aligned_cols=113  Identities=13%  Similarity=0.164  Sum_probs=90.8

Q ss_pred             EEEEEeeec--CCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEecCC---------CcEEEEEE
Q 018029           17 KLELLAAKN--LIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVTI   80 (362)
Q Consensus        17 ~V~Vi~A~~--L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v~~~---------~~~L~~~V   80 (362)
                      .++|..|++  |+..+..+.+||||.+++     +.++.+|+++++|+||.|||+|.|.+...         ...|.++|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            455555555  778888889999999987     24577999999999999999999999643         34599999


Q ss_pred             EEcCCC-CCCceeEEEEEEeccC--CCcceEEEEccC----CCCeeEEEEEEeecc
Q 018029           81 YDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTIKLP  129 (362)
Q Consensus        81 ~D~d~~-~~ddfIG~~~i~L~~l--~~~~~~w~~L~~----~~G~i~l~l~~~~~~  129 (362)
                      ||.+.+ .+|++||++.++|+.+  ......|++|..    -+|++++.+++....
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p~  140 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREPL  140 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCCC
Confidence            999986 4799999999999998  455677999862    358888888766543

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.62  E-value=9.9e-16  Score=128.61  Aligned_cols=108  Identities=26%  Similarity=0.446  Sum_probs=93.9

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D   82 (362)
                      +..+.|.|+|++|++|+..+..+.+||||.+.+..     ...+|+++.++.+|.|+|+|.|.+...   ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d   90 (134)
T cd00276          11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence            44578999999999999999899999999999843     245999999999999999999998753   4679999999


Q ss_pred             cCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      .+..+++++||.+.+++++.+...++|+.|....|+
T Consensus        91 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~  126 (134)
T cd00276          91 KDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRK  126 (134)
T ss_pred             cCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCC
Confidence            998888999999999999976778899999865454

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.62  E-value=1.4e-15  Score=129.06  Aligned_cols=111  Identities=20%  Similarity=0.337  Sum_probs=93.5

Q ss_pred             CCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---C---eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEE
Q 018029            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT   79 (362)
Q Consensus         9 ~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~---~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~   79 (362)
                      +....+.|.|+|++|+||++++..|.+||||++.+.   +   .+++|++.+++.||.|||+|.|.+..   ....|.|+
T Consensus        10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~   89 (138)
T cd08408          10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS   89 (138)
T ss_pred             EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence            445678999999999999999999999999999983   1   24599999999999999999999973   34679999


Q ss_pred             EEEcCCCCCCceeEEEEEEeccCCC-cceEEEEccCCCCee
Q 018029           80 IYDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQV  119 (362)
Q Consensus        80 V~D~d~~~~ddfIG~~~i~L~~l~~-~~~~w~~L~~~~G~i  119 (362)
                      |||++..+++++||++.+++...+. ..++|+.+....++.
T Consensus        90 V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~  130 (138)
T cd08408          90 VYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQ  130 (138)
T ss_pred             EEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCE
Confidence            9999999999999999999887753 457899886544543

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.61  E-value=1.3e-14  Score=120.97  Aligned_cols=98  Identities=15%  Similarity=0.263  Sum_probs=83.5

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI   92 (362)
                      ..|.|+|++|+ |...+..+.+||||.+.++.. ..+|+++.++.+|.|+|.|.|.+.+ .+.|.|+|||++..+.+++|
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i   79 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL   79 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence            36899999998 656666889999999999876 7899999999999999999999864 67899999999999899999


Q ss_pred             EEEEEEeccCC--C---c--ceEEEEcc
Q 018029           93 GSVIVTVESEG--Q---T--GAVWYTLD  113 (362)
Q Consensus        93 G~~~i~L~~l~--~---~--~~~w~~L~  113 (362)
                      |++.++|.++.  .   .  ...|+.|.
T Consensus        80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~  107 (125)
T cd04021          80 GEASLDLSDILKNHNGKLENVKLTLNLS  107 (125)
T ss_pred             EEEEEEHHHhHhhcCCCccceEEEEEEE
Confidence            99999999862  1   1  23478885

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.60  E-value=1.3e-14  Score=120.35  Aligned_cols=101  Identities=19%  Similarity=0.273  Sum_probs=85.1

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEe-cC---CCcEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIY   81 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v-~~---~~~~L~~~V~   81 (362)
                      +..+.|.|+|++|++|+..+..+.+||||++.+.     ....+|++++++.||.|++.|.|.. ..   ....|.|+||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            4458899999999999999988999999999972     3467999999999999999999963 32   2468999999


Q ss_pred             EcCCCCCCceeEEEEEEeccCCCcceEEEEc
Q 018029           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L  112 (362)
                      |++.. .+++||++.++++++......|+.+
T Consensus        92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~  121 (123)
T cd04035          92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNI  121 (123)
T ss_pred             EcCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence            99988 8899999999999996655555543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.60  E-value=2.5e-14  Score=122.03  Aligned_cols=99  Identities=23%  Similarity=0.285  Sum_probs=84.7

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeE-eeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC--
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW--   87 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~-rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~--   87 (362)
                      .....|.|.|++|++|+.++     +|||.+.+++... ||+++.++.||.|+|.|.|........+.|.||+.+...  
T Consensus         8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~   82 (146)
T cd04013           8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK   82 (146)
T ss_pred             EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence            34577999999999998865     7999999998875 999999999999999999987766678999999765322  


Q ss_pred             --CCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        88 --~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                        ++++||.+.|++.++  +...+.||+|.+
T Consensus        83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~  113 (146)
T cd04013          83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVST  113 (146)
T ss_pred             ccCCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence              578999999999998  556789999974

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.58  E-value=1e-14  Score=118.59  Aligned_cols=94  Identities=21%  Similarity=0.368  Sum_probs=79.1

Q ss_pred             EEEEeeecCCCCCCCCCCCcEEEEEECCe------eEeeccccCCCCCeeccEEEEEecC-----CCcEEEEEEEEcCCC
Q 018029           18 LELLAAKNLIGANLNGTSDPYAIITCGSE------KRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVTIYDWDII   86 (362)
Q Consensus        18 V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~------~~rT~~i~~t~nP~W~e~f~f~v~~-----~~~~L~~~V~D~d~~   86 (362)
                      +-.++|++|+.+|..|.+||||++++...      .++|+++++++||.|+ +|.|.+.+     ....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            45679999999999999999999997432      4799999999999999 78887642     257899999999999


Q ss_pred             CCCceeEEEEEEeccCCCcceEEEEc
Q 018029           87 WKSTVLGSVIVTVESEGQTGAVWYTL  112 (362)
Q Consensus        87 ~~ddfIG~~~i~L~~l~~~~~~w~~L  112 (362)
                      +++++||++.+++.++...+..++.+
T Consensus        83 ~~d~~iG~~~~~l~~l~~~~~~~~~~  108 (110)
T cd04047          83 GKHDLIGEFETTLDELLKSSPLEFEL  108 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence            99999999999999986555555554

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=4.7e-15  Score=147.42  Aligned_cols=114  Identities=31%  Similarity=0.522  Sum_probs=103.2

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC------
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII------   86 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~------   86 (362)
                      ...++++|+.|.+|..+|..|++||||...+++.++||+++...+||+|+|.|.|++++...++++.|||.|+.      
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr  373 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR  373 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999889999999998853      


Q ss_pred             -----CCCceeEEEEEEeccCCCcceEEEEccCC------CCeeEEEEEEe
Q 018029           87 -----WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTI  126 (362)
Q Consensus        87 -----~~ddfIG~~~i~L~~l~~~~~~w~~L~~~------~G~i~l~l~~~  126 (362)
                           -.|||+|++.|.+..+.+..+.||.|+.+      +|.|+++|.++
T Consensus       374 qkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisve  424 (1283)
T KOG1011|consen  374 QKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEE
Confidence                 24899999999999999999999999852      48888877765

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.57  E-value=2.6e-14  Score=116.66  Aligned_cols=96  Identities=20%  Similarity=0.330  Sum_probs=82.1

Q ss_pred             CCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEeccC---CCc
Q 018029           31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT  105 (362)
Q Consensus        31 ~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l---~~~  105 (362)
                      .+|.+||||++.++++ ..+|+++.++.||.|||.|.|.+.+. ...|.|+|||++.. ++++||.+.++|.++   ...
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence            4788999999999875 56999999999999999999999764 56799999999988 899999999999986   234


Q ss_pred             ceEEEEccC-CCCeeEEEEEEee
Q 018029          106 GAVWYTLDS-PSGQVCLHIKTIK  127 (362)
Q Consensus       106 ~~~w~~L~~-~~G~i~l~l~~~~  127 (362)
                      ...|++|.+ +.|++++++.+.+
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~~p  110 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALWKP  110 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEEec
Confidence            579999973 4689988887764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.57  E-value=6.9e-15  Score=124.67  Aligned_cols=104  Identities=19%  Similarity=0.312  Sum_probs=87.1

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecC--C-CcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~--~-~~~L~~~V~D   82 (362)
                      +..+.|.|+|++|+||+..+ .+.+||||++.+..     .+++|++++++.||.|||.|.|.+..  . ...|.|+|||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~   90 (137)
T cd08409          12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ   90 (137)
T ss_pred             CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence            45688999999999999998 88899999999742     35589999999999999999999963  2 3579999999


Q ss_pred             cCCCCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~  115 (362)
                      ++..+++++||++.+.....  +...++|..+...
T Consensus        91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~  125 (137)
T cd08409          91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK  125 (137)
T ss_pred             CCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence            99988999999999986543  4556778887643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.56  E-value=9e-14  Score=115.74  Aligned_cols=102  Identities=22%  Similarity=0.338  Sum_probs=85.7

Q ss_pred             eEEEEEEEeeecCCCCC--CCCCCCcEEEEEE------CCeeEeeccccCCC-CCeeccEEEEEecCC-CcEEEEEEEEc
Q 018029           14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITC------GSEKRFSSMVPGSR-YPMWGEEFNFSVDEL-PVQIIVTIYDW   83 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d--~~g~sDPyv~i~l------~~~~~rT~~i~~t~-nP~W~e~f~f~v~~~-~~~L~~~V~D~   83 (362)
                      ..|+|+|++|++|+.++  ..+.+||||++++      .....+|+++.++. ||.|+|+|.|.+... ...|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            46899999999999988  5789999999998      34567999988775 999999999998754 35699999999


Q ss_pred             CCCCCCceeEEEEEEeccCCCcceEEEEccCCCC
Q 018029           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G  117 (362)
                      +.. ++++||++.+++.++..+ ..|++|..+.|
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~g-~~~~~l~~~~~  113 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQG-YRHVPLLDSKG  113 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcCc-eEEEEecCCCC
Confidence            987 899999999999998543 57889875443

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.56  E-value=4.5e-15  Score=107.99  Aligned_cols=60  Identities=35%  Similarity=0.682  Sum_probs=57.0

Q ss_pred             ccCCCcceeeeehhhhhhccccceeEEEecceEEEeecCCCcee-EEEeecccceEEEEec
Q 018029          170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ  229 (362)
Q Consensus       170 ~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~S~~~g~~~-k~~ip~~di~~i~k~~  229 (362)
                      +||++|.|+.+|.|+|++.++++|+||+|++++||+|+.+|+.+ +++||+.||..|+|.+
T Consensus         1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~~   61 (61)
T smart00568        1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKST   61 (61)
T ss_pred             CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEECC
Confidence            37899999999999999999999999999999999999999999 9999999999999963

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.55  E-value=4.2e-14  Score=115.76  Aligned_cols=80  Identities=15%  Similarity=0.336  Sum_probs=70.0

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEc-------
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW-------   83 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~-------   83 (362)
                      |.|+|.+|++|+     +.+||||.+.++.     .+.+|+++.+|+||.|||+|.|++.. .+.|.+.|||+       
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~   74 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL   74 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence            579999999995     4699999998852     45799999999999999999999974 77999999998       


Q ss_pred             CCCCCCceeEEEEEEecc
Q 018029           84 DIIWKSTVLGSVIVTVES  101 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~  101 (362)
                      |..++|+++|.+.+.|..
T Consensus        75 d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          75 DGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             cccCcccEEEEEEEEECH
Confidence            466789999999999875

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=9.3e-14  Score=138.22  Aligned_cols=162  Identities=19%  Similarity=0.260  Sum_probs=123.4

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCC
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~   85 (362)
                      ....|.|+|++|++|+.+|..|.+||||.+++-   +.+.+|++.++++||.|||+|.|.+..   ..+.|.++|||+|.
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            457789999999999999977889999999993   466799999999999999999999752   36789999999999


Q ss_pred             CCCCceeEEEEEEeccCC--CcceEEEEccCC-------CCeeEEEEEEeeccccccccccccccchhhhccccccCCCc
Q 018029           86 IWKSTVLGSVIVTVESEG--QTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPT  156 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l~--~~~~~w~~L~~~-------~G~i~l~l~~~~~~~~~~~~~~~~~~~~~r~r~~~~kl~~k  156 (362)
                      ++++++||++.++|..+.  .....|.+|.+.       .|++.+.+.|.+....-.   ..        -+.+..+...
T Consensus       245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~lt---v~--------v~kar~L~~~  313 (421)
T KOG1028|consen  245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLT---VV--------VIKARNLKSM  313 (421)
T ss_pred             cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEE---EE--------EEEecCCCcc
Confidence            999999999999998873  345789999752       268888888876632211   00        1122344455


Q ss_pred             eeeccccccceeeccCCCcceeeeehhh
Q 018029          157 VVHQKPGPLQTIFNLLPDEFVELSYSCV  184 (362)
Q Consensus       157 ~~~~k~~~f~~~F~lp~~E~l~~~~~c~  184 (362)
                      +....+++|-+...++.+..+...-.+.
T Consensus       314 ~~~~~~d~~Vk~~l~~~~~~~~kkkT~~  341 (421)
T KOG1028|consen  314 DVGGLSDPYVKVTLLDGDKRLSKKKTSV  341 (421)
T ss_pred             cCCCCCCccEEEEEecCCceeeeeeeec
Confidence            5566777888888777775554444433

>PLN03008 Phospholipase D delta

Probab=99.55  E-value=4.7e-14  Score=146.69  Aligned_cols=118  Identities=19%  Similarity=0.340  Sum_probs=98.2

Q ss_pred             eeEEEEEEEeeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eEe
Q 018029           13 AYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSE-KRF   49 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~------------------------------------------~g~sDPyv~i~l~~~-~~r   49 (362)
                      .|.|.++|.+|++|+.+|.                                          .++|||||+|.++.. ..|
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R   92 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR   92 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence            5889999999999986432                                          246899999999865 459


Q ss_pred             eccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEeccC--CCcceEEEEccC-------CCCeeE
Q 018029           50 SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS-------PSGQVC  120 (362)
Q Consensus        50 T~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~-------~~G~i~  120 (362)
                      |+++.+++||+|||+|.|.+.+....|.|+|||+|.++ +++||++.+++.++  +...+.|++|..       ..|+++
T Consensus        93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~  171 (868)
T PLN03008         93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIF  171 (868)
T ss_pred             EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEE
Confidence            99999999999999999999887789999999999986 58999999999998  556789999963       235777


Q ss_pred             EEEEEeecccc
Q 018029          121 LHIKTIKLPVN  131 (362)
Q Consensus       121 l~l~~~~~~~~  131 (362)
                      +++.+.+....
T Consensus       172 v~lqf~pv~~~  182 (868)
T PLN03008        172 IDMKFTPFDQI  182 (868)
T ss_pred             EEEEEEEcccc
Confidence            77777765443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.53  E-value=3.5e-14  Score=159.70  Aligned_cols=111  Identities=21%  Similarity=0.340  Sum_probs=97.7

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCC--cEEEEEEEEcCCCCCC
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELP--VQIIVTIYDWDIIWKS   89 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~--~~L~~~V~D~d~~~~d   89 (362)
                      .|.|.|+|++|+||.  +..|.+||||++.++++ +.+|++++++.||.|||+|.|.+.+++  ++|+++|||+|.+++|
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd 2056 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS 2056 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC
Confidence            699999999999998  44789999999999966 779999999999999999998887654  7899999999998555


Q ss_pred             ceeEEEEEEeccC--CCcceEEEEccC---CCCe---eEEEEEEe
Q 018029           90 TVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI  126 (362)
Q Consensus        90 dfIG~~~i~L~~l--~~~~~~w~~L~~---~~G~---i~l~l~~~  126 (362)
                       .+|.+++++.++  ++....||+|.+   ++|+   +.+++.|.
T Consensus      2057 -~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2057 -SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             -CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence             999999999997  677889999984   6788   77777764

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.43  E-value=1.1e-12  Score=100.22  Aligned_cols=81  Identities=26%  Similarity=0.491  Sum_probs=72.8

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEECC---eeEeeccccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCCCCCCce
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWKSTV   91 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~---~~~rT~~i~~t~nP~W~e~f~f~v~-~~~~~L~~~V~D~d~~~~ddf   91 (362)
                      |.|+|++|++|+..+..+.+||||.+.+..   ...+|+++.++.+|.|+++|.|.+. .....|.|+|||++..+++++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            689999999999988888999999999965   5689999999999999999999975 445569999999999988999


Q ss_pred             eEEEE
Q 018029           92 LGSVI   96 (362)
Q Consensus        92 IG~~~   96 (362)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.32  E-value=3.9e-12  Score=128.34  Aligned_cols=115  Identities=23%  Similarity=0.369  Sum_probs=101.9

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI   92 (362)
                      .-|.|+|.+|+||++.+..|.+||||.|.++.+ ..||.++.+++.|-|.|+|.|+++..-+.|.|.|||.| ++.|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            458899999999999999999999999999865 56999999999999999999999987889999999999 8999999


Q ss_pred             EEEEEEeccC--CCcceEEEEccC------CCCeeEEEEEEeecc
Q 018029           93 GSVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKLP  129 (362)
Q Consensus        93 G~~~i~L~~l--~~~~~~w~~L~~------~~G~i~l~l~~~~~~  129 (362)
                      |.+.+.=+++  -++.+.|+.|.+      -.|++|+++.+...-
T Consensus        84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~  128 (800)
T KOG2059|consen   84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAI  128 (800)
T ss_pred             ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecccc
Confidence            9999998887  457899999974      248898888766543

>cd00030 C2 C2 domain

Probab=99.31  E-value=2.3e-11  Score=94.54  Aligned_cols=97  Identities=30%  Similarity=0.574  Sum_probs=84.8

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEECC-eeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~ddfIG   93 (362)
                      |.|.+++|++|......+..+|||.+.+.. ...+|++..++.+|.|++.|.|.+.. ....|.++|||.+..+.+.+||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            468999999998877778899999999987 78899999999999999999999987 6778999999999887789999


Q ss_pred             EEEEEeccCC---CcceEEEEc
Q 018029           94 SVIVTVESEG---QTGAVWYTL  112 (362)
Q Consensus        94 ~~~i~L~~l~---~~~~~w~~L  112 (362)
                      .+.+++..+.   .....|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999874   455667654

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.26  E-value=6.7e-11  Score=92.44  Aligned_cols=88  Identities=24%  Similarity=0.505  Sum_probs=78.7

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEECCe---eEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCce
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV   91 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~---~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~ddf   91 (362)
                      +.|.|++|++|......+..+|||.+.+...   ..+|+++.++.+|.|+++|.|.+... ...|.|+|||.+..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            6799999999998876678999999999764   68999999999999999999999876 7889999999998777899


Q ss_pred             eEEEEEEeccCC
Q 018029           92 LGSVIVTVESEG  103 (362)
Q Consensus        92 IG~~~i~L~~l~  103 (362)
                      +|.+.+++.++.
T Consensus        82 ~G~~~~~l~~~~   93 (101)
T smart00239       82 IGQVTIPLSDLL   93 (101)
T ss_pred             eEEEEEEHHHcc
Confidence            999999998873

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.16  E-value=2.4e-10  Score=95.98  Aligned_cols=87  Identities=18%  Similarity=0.282  Sum_probs=74.0

Q ss_pred             EEEEEEeeecCCCC--CCCCC--CCcEEEEEEC---CeeEeeccccCCCC--CeeccEEEEEecC---------------
Q 018029           16 IKLELLAAKNLIGA--NLNGT--SDPYAIITCG---SEKRFSSMVPGSRY--PMWGEEFNFSVDE---------------   71 (362)
Q Consensus        16 L~V~Vi~A~~L~~~--d~~g~--sDPyv~i~l~---~~~~rT~~i~~t~n--P~W~e~f~f~v~~---------------   71 (362)
                      |+|.|.+|++++..  +..|.  +||||+..+.   ..+++|.+..+++|  |.||+.|.|++..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            78999999996543  44664  9999999985   45679999999999  9999999987653               


Q ss_pred             ---------CCcEEEEEEEEcCCCCCCceeEEEEEEeccC
Q 018029           72 ---------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (362)
Q Consensus        72 ---------~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l  102 (362)
                               ....|.++|||.|.+++|++||+++++|..+
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l  121 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSIL  121 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhc
Confidence                     1345999999999999999999999999987

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=1.2e-10  Score=116.11  Aligned_cols=102  Identities=25%  Similarity=0.434  Sum_probs=84.7

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D   82 (362)
                      +..|.|+|.|++|++|+.++..+.+||||++.+-     ..+++|.+.++++||.|||+|.|.++..   ...|.++|||
T Consensus       295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d  374 (421)
T KOG1028|consen  295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD  374 (421)
T ss_pred             cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence            4579999999999999999999999999999972     3455899999999999999999988732   3469999999


Q ss_pred             cCCCCCCceeEEEEEEeccCCCcceEEEEc
Q 018029           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L  112 (362)
                      +|.++.+++||.+.+....-+....+|...
T Consensus       375 ~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m  404 (421)
T KOG1028|consen  375 HDTLGSNDLIGRCILGSDSTGEEVRHWQEM  404 (421)
T ss_pred             cccccccceeeEEEecCCCCchHHHHHHHH
Confidence            999999999998888776533334455544

>PLN02223 phosphoinositide phospholipase C

Probab=99.14  E-value=3.7e-10  Score=113.54  Aligned_cols=105  Identities=18%  Similarity=0.273  Sum_probs=84.6

Q ss_pred             eeEEEEEEEeeecCCC-----CCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEE
Q 018029           13 AYLIKLELLAAKNLIG-----ANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIY   81 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~-----~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~   81 (362)
                      ...|.|+|++|.+++.     .+.....||||.|.+.     ...++|.+..++.||.|||+|.|.+..+ -..|+|+||
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            4679999999998741     1234568999999983     3455787777899999999999998754 456999999


Q ss_pred             EcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      |+|..++++|+|++.+|+..+..+ -++++|..+.|+
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~  523 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGK  523 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcC
Confidence            999888899999999999999665 367788776665

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.08  E-value=2.4e-11  Score=122.71  Aligned_cols=120  Identities=27%  Similarity=0.464  Sum_probs=97.1

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC------C-------------------------eeEeeccccCCCC
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------S-------------------------EKRFSSMVPGSRY   58 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~------~-------------------------~~~rT~~i~~t~n   58 (362)
                      .++.+.+.|.+.+|++|..+|.+|.||||+.+.+-      +                         -.+-|++.+.|+|
T Consensus       110 k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLn  189 (1103)
T KOG1328|consen  110 KPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLN  189 (1103)
T ss_pred             CCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCC
Confidence            34567788889999999999999999999998761      0                         0135788889999


Q ss_pred             CeeccEEEEEecCC-CcEEEEEEEEcCCC---------------------------------C---CCceeEEEEEEecc
Q 018029           59 PMWGEEFNFSVDEL-PVQIIVTIYDWDII---------------------------------W---KSTVLGSVIVTVES  101 (362)
Q Consensus        59 P~W~e~f~f~v~~~-~~~L~~~V~D~d~~---------------------------------~---~ddfIG~~~i~L~~  101 (362)
                      |+|+|.|.|.+.+. ..++.+.+||+|..                                 +   .|||+|++.++|.+
T Consensus       190 PkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E  269 (1103)
T KOG1328|consen  190 PKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE  269 (1103)
T ss_pred             cchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence            99999999999864 55799999999821                                 2   27999999999999


Q ss_pred             C-CCcceEEEEccCCC------CeeEEEEEEeecc
Q 018029          102 E-GQTGAVWYTLDSPS------GQVCLHIKTIKLP  129 (362)
Q Consensus       102 l-~~~~~~w~~L~~~~------G~i~l~l~~~~~~  129 (362)
                      + ..+.++||+|++++      |++++.+.+....
T Consensus       270 iP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e  304 (1103)
T KOG1328|consen  270 IPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKE  304 (1103)
T ss_pred             CCcchHHHHhccCcccccccccceEEEEEEEeeec
Confidence            9 66789999999743      7788877765544

>PLN02952 phosphoinositide phospholipase C

Probab=99.06  E-value=1.4e-09  Score=111.47  Aligned_cols=105  Identities=16%  Similarity=0.249  Sum_probs=85.0

Q ss_pred             eeEEEEEEEeeecCCCC------CCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 018029           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI   80 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~------d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V   80 (362)
                      ...|.|+|++|.+|+..      +.....||||.+.+-     ..+.+|+++.++.||.|+++|.|.+..+ -.-|+|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46799999999887421      223346999999983     4566999999999999999999988753 45699999


Q ss_pred             EEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        81 ~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      ||+|..+.++|+|++.+++..+..+. +|++|..+.|.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy-R~VpL~~~~G~  585 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI-RSVPLHDKKGE  585 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc-eeEeCcCCCCC
Confidence            99999888999999999999997664 59999765554

>PLN02270 phospholipase D alpha

Probab=99.02  E-value=3.3e-09  Score=110.93  Aligned_cols=116  Identities=19%  Similarity=0.334  Sum_probs=93.9

Q ss_pred             eeEEEEEEEeeecCCCCC------------------CCCCCCcEEEEEECCee-EeeccccCC-CCCeeccEEEEEecCC
Q 018029           13 AYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSEK-RFSSMVPGS-RYPMWGEEFNFSVDEL   72 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d------------------~~g~sDPyv~i~l~~~~-~rT~~i~~t-~nP~W~e~f~f~v~~~   72 (362)
                      .|.|.|+|++|++|+.++                  ..+.+||||.|.+++.. .||+++.+. .||.|+|.|.+.+...
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            588999999999998631                  13568999999997655 499999885 6999999999999988


Q ss_pred             CcEEEEEEEEcCCCCCCceeEEEEEEeccC--CCcceEEEEccCCC-----C--eeEEEEEEeecc
Q 018029           73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----G--QVCLHIKTIKLP  129 (362)
Q Consensus        73 ~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~~-----G--~i~l~l~~~~~~  129 (362)
                      ...+.|+|.|.|.++. .+||.+.+++.++  +...+.|+++....     +  ++++.+.+....
T Consensus        87 ~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~  151 (808)
T PLN02270         87 ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT  151 (808)
T ss_pred             cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence            8999999999998854 5999999999998  55688999996422     2  456666655543

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.01  E-value=9.6e-10  Score=116.87  Aligned_cols=104  Identities=22%  Similarity=0.355  Sum_probs=90.0

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCC
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKS   89 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~d   89 (362)
                      +.|.|.|.+.+|.||+..|.+|.+||||++.+... .++|.++++++||.|||+|.+++.. ....+.+-|+|||...++
T Consensus      1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~kn 1117 (1227)
T COG5038        1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKN 1117 (1227)
T ss_pred             ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCc
Confidence            46889999999999999999999999999999766 6799999999999999999999984 467899999999999999


Q ss_pred             ceeEEEEEEeccCCCc--ceEEEEccCC
Q 018029           90 TVLGSVIVTVESEGQT--GAVWYTLDSP  115 (362)
Q Consensus        90 dfIG~~~i~L~~l~~~--~~~w~~L~~~  115 (362)
                      +.||.+.++|..+.++  ...-.+|+++
T Consensus      1118 d~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038        1118 DLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred             cccccccccHhhcCcCCccceeeeccCc
Confidence            9999999999998433  2334445553

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.97  E-value=3.2e-09  Score=108.73  Aligned_cols=105  Identities=15%  Similarity=0.143  Sum_probs=84.2

Q ss_pred             eeEEEEEEEeeecCCCC------CCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 018029           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI   80 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~------d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V   80 (362)
                      ...|.|+|+.+.+++..      +.....||||.|.+-     ..+.+|++..++.||.|+|+|.|.+..+ -..|+|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999986421      233457999999982     4456888888999999999999988743 56799999


Q ss_pred             EEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        81 ~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      ||+|...+++|+|++.+|+..+..+. +..+|..+.|.
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-R~V~L~~~~G~  584 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGI-HAVPLFNRKGV  584 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCcc-ceEeccCCCcC
Confidence            99998889999999999999996653 46677766664

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.97  E-value=1.9e-10  Score=116.33  Aligned_cols=92  Identities=25%  Similarity=0.402  Sum_probs=82.1

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-------eeEeeccccCCCCCeeccEEEEEecCC-----CcEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIV   78 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-------~~~rT~~i~~t~nP~W~e~f~f~v~~~-----~~~L~~   78 (362)
                      +....|.|.|+-|+++.+.|.+|.|||||+|.+..       ..++|+++.+|+||+|+|.|.|.++.+     ..-+.|
T Consensus       944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen  944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred             ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence            45667889999999999999999999999999963       345999999999999999999999743     334999


Q ss_pred             EEEEcCCCCCCceeEEEEEEeccC
Q 018029           79 TIYDWDIIWKSTVLGSVIVTVESE  102 (362)
Q Consensus        79 ~V~D~d~~~~ddfIG~~~i~L~~l  102 (362)
                      +|+|+|-.+.+||-|++.+.|+++
T Consensus      1024 TVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred             EeeccceecccccchHHHHhhCCC
Confidence            999999999999999999999998

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.94  E-value=5.5e-09  Score=111.24  Aligned_cols=120  Identities=17%  Similarity=0.351  Sum_probs=96.1

Q ss_pred             CCCceeEEEEEEEeeecCCCCC--CCCCCCcEEEEEEC-CeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCC
Q 018029            9 QTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI   85 (362)
Q Consensus         9 ~~~~~~~L~V~Vi~A~~L~~~d--~~g~sDPyv~i~l~-~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~   85 (362)
                      .+..-|++.|+|.+|++|...+  .++..|||+++... ....+|++..+++||.|||+|.+.+....++|.++|||.+.
T Consensus       431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            5566899999999999999988  68999999999974 33459999999999999999999998888999999999998


Q ss_pred             CCCCceeEEEEEEeccC--CCc-ceEEEEcc---CCCCeeEEEEEEeec
Q 018029           86 IWKSTVLGSVIVTVESE--GQT-GAVWYTLD---SPSGQVCLHIKTIKL  128 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l--~~~-~~~w~~L~---~~~G~i~l~l~~~~~  128 (362)
                      ..+|+.+|.+.++|..+  .+. ...-+.+.   ...|+++-.+.+.+.
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~  559 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPV  559 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecc
Confidence            89999999999999876  221 12233332   133666666665544

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.90  E-value=4.8e-09  Score=107.74  Aligned_cols=105  Identities=21%  Similarity=0.330  Sum_probs=83.8

Q ss_pred             EEEEEEEeeecCCCCC----CCCCCCcEEEEEEC-----CeeEeeccc-cCCCCCeeccEEEEEecC-CCcEEEEEEEEc
Q 018029           15 LIKLELLAAKNLIGAN----LNGTSDPYAIITCG-----SEKRFSSMV-PGSRYPMWGEEFNFSVDE-LPVQIIVTIYDW   83 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d----~~g~sDPyv~i~l~-----~~~~rT~~i-~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~   83 (362)
                      .|.|.|+++.++++..    .+..+||||.|.+.     ....+|+++ .++.||.|+|+|.|.+.. +-..|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            7999999999765442    23458999999983     345589855 578999999999999974 356799999999


Q ss_pred             CCCCCCceeEEEEEEeccCCCcceEEEEccCCCCeeE
Q 018029           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC  120 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~i~  120 (362)
                      |..++|||+|+.++|+..+..+. +-.+|.+..|+.+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~Gy-RhVpL~~~~G~~~  732 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGY-RHVPLLSREGEAL  732 (746)
T ss_pred             CCCCcccccceeeccHHHhhCce-eeeeecCCCCccc
Confidence            99999999999999999997654 3456766666643

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.90  E-value=1.3e-08  Score=104.13  Aligned_cols=105  Identities=14%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             eeEEEEEEEeeecCC----C--CCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 018029           13 AYLIKLELLAAKNLI----G--ANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI   80 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~----~--~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V   80 (362)
                      ...|.|+|+.+.+++    .  .+.....||||.|.+.     ..+.+|+++.++.||.|+|+|.|.+..+ -.-|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            467999999998752    1  1223457999999983     4567999999999999999999988743 46799999


Q ss_pred             EEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        81 ~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      ||+|..+.++|+|++.+++..+..+. +.++|..+.|.
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy-R~V~L~~~~g~  567 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGI-RAFPLHSRKGE  567 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCcc-ceEEccCCCcC
Confidence            99998888999999999999996653 46677665554

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=98.89  E-value=4.9e-10  Score=115.26  Aligned_cols=301  Identities=24%  Similarity=0.215  Sum_probs=198.7

Q ss_pred             CCCCCCCCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCC-cEEEEEEE
Q 018029            3 QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIY   81 (362)
Q Consensus         3 ~~~~~~~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~-~~L~~~V~   81 (362)
                      .++++......+......+.+.++.....++.++||..+.........+....+.+|.|++.+.|.-...+ ....+..+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf  165 (590)
T KOG1032|consen   86 GLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPF  165 (590)
T ss_pred             CCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEee
Confidence            34566666667777777777777777777778999999998888888888889999999999999865432 44555666


Q ss_pred             EcCCC-CCCceeEEEEEEecc-CCCcceEEEEccCCCCeeE---EEEEEeeccccccccccccccchhhhccccccCCCc
Q 018029           82 DWDII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPT  156 (362)
Q Consensus        82 D~d~~-~~ddfIG~~~i~L~~-l~~~~~~w~~L~~~~G~i~---l~l~~~~~~~~~~~~~~~~~~~~~r~r~~~~kl~~k  156 (362)
                      +++.. .+..-.|.+...+.- .......|..+.++.+...   +.+.-........++..+....... ...-..+.+.
T Consensus       166 ~eI~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~-~~~~~~~~~~  244 (590)
T KOG1032|consen  166 DEITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEP-EVNDDQQGNV  244 (590)
T ss_pred             eeeeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCC-CcCccccccc
Confidence            65432 122223333322222 2445677888887766543   2222222222222222222211100 0000113345


Q ss_pred             eeeccccccceeeccCCCcceeeeehhhhhhccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCc
Q 018029          157 VVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPA  236 (362)
Q Consensus       157 ~~~~k~~~f~~~F~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~  236 (362)
                      +..+++..+...|++|.+|.+.+.++|.+.+..+++|+++++....||++.+||..+++.-++.+++.++-.......+.
T Consensus       245 ~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~  324 (590)
T KOG1032|consen  245 DNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPR  324 (590)
T ss_pred             ccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCC
Confidence            66788999999999999999999999999999999999999999999999999999999999999999999988777776


Q ss_pred             EEEEEecCCC---CCCCC--CCCCCCCceeEEEeeeechHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhhcCCCC
Q 018029          237 ITIILRMGAG---GHGVP--PLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSI  307 (362)
Q Consensus       237 i~i~~~~~~~---~~~~~--~~~~~~~~~~~~F~sf~~rd~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (362)
                      ..+..|..++   .|+..  .-.+-.+...+.|..+...   ++++....-...+........+.....+.++.+.
T Consensus       325 ~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~  397 (590)
T KOG1032|consen  325 SGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSC  397 (590)
T ss_pred             ccceeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCccccceeeeeEEEEEEecCCcce
Confidence            4455555444   34322  2223357778888877755   6666665555555554444444444444444443

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.88  E-value=8.1e-09  Score=82.26  Aligned_cols=82  Identities=16%  Similarity=0.274  Sum_probs=69.3

Q ss_pred             EEEEEEeeecCCCCC---CCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 018029           16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d---~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddf   91 (362)
                      |.|+|.+|+++...+   +.+.+||||+++++.. +.||++   +.||.|||+|.|++. ....+.+.|||.... ..-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~-~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGD-QPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCC-eecc
Confidence            578999999999887   6788999999999866 778887   479999999999995 478899999998653 4557


Q ss_pred             eEEEEEEeccC
Q 018029           92 LGSVIVTVESE  102 (362)
Q Consensus        92 IG~~~i~L~~l  102 (362)
                      ||...+.++++
T Consensus        76 i~llW~~~sdi   86 (109)
T cd08689          76 VGLLWLRLSDI   86 (109)
T ss_pred             eeeehhhHHHH
Confidence            88888888875

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02228 Phosphoinositide phospholipase C

Probab=98.87  E-value=2.8e-08  Score=101.43  Aligned_cols=105  Identities=12%  Similarity=0.189  Sum_probs=82.7

Q ss_pred             eeEEEEEEEeeecCCC---C---CCCCCCCcEEEEEEC-----CeeEeeccccCCCCCee-ccEEEEEecCC-CcEEEEE
Q 018029           13 AYLIKLELLAAKNLIG---A---NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMW-GEEFNFSVDEL-PVQIIVT   79 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~---~---d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W-~e~f~f~v~~~-~~~L~~~   79 (362)
                      ...|.|+|++|.+|+.   .   +.....||||.+.+.     ..+.+|+++.++.||.| +++|.|.+..+ -.-|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3479999999998731   1   223458999999982     44569999988899999 99999998743 4579999


Q ss_pred             EEEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        80 V~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      |||+|..+.++|+|++.+++..+..+ -+.++|..+.|+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~G-YR~VpL~~~~G~  547 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSG-VRAVRLHDRAGK  547 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCC-eeEEEccCCCCC
Confidence            99999888899999999999999655 346678665554

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.68  E-value=7e-08  Score=96.05  Aligned_cols=114  Identities=17%  Similarity=0.293  Sum_probs=94.3

Q ss_pred             eeEEEEEEEeeecCCCCCCCC-CCCcEEEEEECCeeEeeccccCCCCCeec-cEEEEEecCC---CcEEEEEEEEcCCCC
Q 018029           13 AYLIKLELLAAKNLIGANLNG-TSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDEL---PVQIIVTIYDWDIIW   87 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g-~sDPyv~i~l~~~~~rT~~i~~t~nP~W~-e~f~f~v~~~---~~~L~~~V~D~d~~~   87 (362)
                      .|.|.|++..|++|+-+|..+ ..|.||.+++.+..++|.+..+++||.|| +.|.|++.+.   +.+|.+++.|+|.-+
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys   81 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS   81 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence            377899999999999998643 57999999999999999999999999999 7799999843   567999999999999


Q ss_pred             CCceeEEEEEEeccC--C----------CcceEEEEccC----CCCeeEEEEEEe
Q 018029           88 KSTVLGSVIVTVESE--G----------QTGAVWYTLDS----PSGQVCLHIKTI  126 (362)
Q Consensus        88 ~ddfIG~~~i~L~~l--~----------~~~~~w~~L~~----~~G~i~l~l~~~  126 (362)
                      .+|-||.+.+.++.+  .          --...|+++-.    -.|+|.+.+.+.
T Consensus        82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd  136 (1169)
T KOG1031|consen   82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD  136 (1169)
T ss_pred             cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence            999999999999875  1          12457999853    246776655543

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.56  E-value=3.9e-08  Score=103.12  Aligned_cols=97  Identities=22%  Similarity=0.416  Sum_probs=85.0

Q ss_pred             CCCCCC-CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeE--eeccccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 018029            5 KGDPQT-NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI   80 (362)
Q Consensus         5 ~~~~~~-~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~--rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V   80 (362)
                      ++-++. +...+++|+|++|-+|.+.|.+|.+|||+.+.+++...  +...+.+++||+|++.|.+...-+ ...+.++|
T Consensus       603 ~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~v  682 (1105)
T KOG1326|consen  603 LDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEV  682 (1105)
T ss_pred             hcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEE
Confidence            444444 45678899999999999999999999999999987764  888999999999999999988743 56699999


Q ss_pred             EEcCCCCCCceeEEEEEEecc
Q 018029           81 YDWDIIWKSTVLGSVIVTVES  101 (362)
Q Consensus        81 ~D~d~~~~ddfIG~~~i~L~~  101 (362)
                      ||+|..+.|+.||+..++|+.
T Consensus       683 yd~D~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  683 YDHDLEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             EEeecccccchhhceehhhhh
Confidence            999999999999999999986

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.51  E-value=4.7e-07  Score=93.25  Aligned_cols=99  Identities=15%  Similarity=0.260  Sum_probs=78.1

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeE-eeccccCCCCCeec-cEEEEEecCC-CcEEEEEEEEcC
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKR-FSSMVPGSRYPMWG-EEFNFSVDEL-PVQIIVTIYDWD   84 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~-rT~~i~~t~nP~W~-e~f~f~v~~~-~~~L~~~V~D~d   84 (362)
                      ...|.|.|+.|+.|+... .|-.-|||.|.+     +..++ +|.++.|++||+|+ |+|+|++.++ -.-|+|.|||.|
T Consensus      1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence            467899999999998554 444569999997     34444 55566789999999 9999999865 456999999999


Q ss_pred             CCCCCceeEEEEEEeccCCCcceEEEEcc
Q 018029           85 IIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l~~~~~~w~~L~  113 (362)
                      .++...|||+++.|+..+..+ -+.++|.
T Consensus      1143 mfs~~~FiaqA~yPv~~ik~G-fRsVpLk 1170 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG-FRSVPLK 1170 (1267)
T ss_pred             ccCCcceeeeeecchhhhhcc-ceeeecc
Confidence            999888999999999988443 2334554

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.44  E-value=6.3e-07  Score=91.32  Aligned_cols=108  Identities=23%  Similarity=0.396  Sum_probs=81.5

Q ss_pred             EeeecCCCCCCCCCCCcEEEEEECCee----EeeccccCCCCCeeccEEEEEecCC----------------CcEEEEEE
Q 018029           21 LAAKNLIGANLNGTSDPYAIITCGSEK----RFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQIIVTI   80 (362)
Q Consensus        21 i~A~~L~~~d~~g~sDPyv~i~l~~~~----~rT~~i~~t~nP~W~e~f~f~v~~~----------------~~~L~~~V   80 (362)
                      ++++++.+.+ ++.+|||+.+......    .+|.+.+++.+|.|+|.|.|++...                ...|++++
T Consensus       138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l  216 (800)
T KOG2059|consen  138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL  216 (800)
T ss_pred             hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence            4455555554 5669999999985433    4999999999999999999988632                23489999


Q ss_pred             EE-cCCCCCCceeEEEEEEeccC--CCcceEEEEccCC-----------CCeeEEEEEEeecc
Q 018029           81 YD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-----------SGQVCLHIKTIKLP  129 (362)
Q Consensus        81 ~D-~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~-----------~G~i~l~l~~~~~~  129 (362)
                      |+ ++....++|+|++.+++...  ....+.||.|.++           -|.+++.+.+....
T Consensus       217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~  279 (800)
T KOG2059|consen  217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDH  279 (800)
T ss_pred             ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeece
Confidence            98 56666699999999999886  4566789999752           15667777766543

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=98.42  E-value=2.6e-07  Score=93.52  Aligned_cols=106  Identities=21%  Similarity=0.333  Sum_probs=88.2

Q ss_pred             eeccccccceeeccCCCcceeeeehhhhhh---ccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEecccccc
Q 018029          158 VHQKPGPLQTIFNLLPDEFVELSYSCVIER---SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFIN  234 (362)
Q Consensus       158 ~~~k~~~f~~~F~lp~~E~l~~~~~c~l~~---~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~  234 (362)
                      .+.+++.| .+|++|  |.+.....|.++.   +...+|+||+|.+|+||.|..+. ...+++|+..|..|+|.+....+
T Consensus         6 ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~   81 (671)
T KOG4347|consen    6 ARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLF   81 (671)
T ss_pred             hhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccc
Confidence            45678889 899999  9999999999988   34577999999999999999875 47899999999999999955555


Q ss_pred             C-cEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHHHH
Q 018029          235 P-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAK  282 (362)
Q Consensus       235 ~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~~~~  282 (362)
                      + -|.+.++               +...+.|..+.+|+..+.-+.....
T Consensus        82 ~~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k~~~~~~  115 (671)
T KOG4347|consen   82 TQLISLFTS---------------NMVGMRFGGLTERLKLLSKLHLPPA  115 (671)
T ss_pred             hhhhHHhhc---------------CcceEEecchhhHHHHHHHHhchHh
Confidence            5 6777764               4568999999999998877755554

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.37  E-value=1e-06  Score=88.43  Aligned_cols=174  Identities=14%  Similarity=0.134  Sum_probs=118.4

Q ss_pred             CCCCCCCCCCcEEEEEEC-------------------CeeEeeccccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCCC
Q 018029           27 IGANLNGTSDPYAIITCG-------------------SEKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDII   86 (362)
Q Consensus        27 ~~~d~~g~sDPyv~i~l~-------------------~~~~rT~~i~~t~nP~W~e~f~f~v~-~~~~~L~~~V~D~d~~   86 (362)
                      .+.|..+++||.|.+...                   ....+|+++.+.+||.|.+.|.+.+. +..+.+++.+||.+..
T Consensus         3 ~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~   82 (529)
T KOG1327|consen    3 MAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSR   82 (529)
T ss_pred             cccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCc
Confidence            344556677777776541                   12238999999999999999999886 6678899999998754


Q ss_pred             ----CCCceeEEEEEEeccCCCcceEEEEccC------CCCeeEEEEEEeeccccccccccccccchhhhccccccCCCc
Q 018029           87 ----WKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPT  156 (362)
Q Consensus        87 ----~~ddfIG~~~i~L~~l~~~~~~w~~L~~------~~G~i~l~l~~~~~~~~~~~~~~~~~~~~~r~r~~~~kl~~k  156 (362)
                          ...+|+|++.+.+..+.........|..      .+|.+  .+...........         .+......+++++
T Consensus        83 ~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~g~i--ti~aee~~~~~~~---------~~~~~~~~~ld~k  151 (529)
T KOG1327|consen   83 TPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGSGTI--TISAEEDESDNDV---------VQFSFRAKNLDPK  151 (529)
T ss_pred             cCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCcccE--EEEeecccccCce---------eeeeeeeeecCcc
Confidence                3578999999999997433332222221      23433  3333322211111         1122234678899


Q ss_pred             eeeccccccceeeccC---------CCcceeeeehhhhhh-ccccc----eeEEEecceEEEeecCCCc
Q 018029          157 VVHQKPGPLQTIFNLL---------PDEFVELSYSCVIER-SFLYH----GRMYVSAWHICFHSNAFSR  211 (362)
Q Consensus       157 ~~~~k~~~f~~~F~lp---------~~E~l~~~~~c~l~~-~~~~~----G~lyis~~~~cF~S~~~g~  211 (362)
                      ++..++++|..++..-         ..|++.++.++.|.. .++.+    +.+-.+....|++.+..|+
T Consensus       152 d~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  152 DFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             cccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCC
Confidence            9999999999999542         338999999999988 55544    5566777789999888775

>PLN02352 phospholipase D epsilon

Probab=98.32  E-value=5e-06  Score=87.18  Aligned_cols=109  Identities=12%  Similarity=0.154  Sum_probs=80.8

Q ss_pred             eeEEEEEEEeeecCCCC----CC-CCCCCcEEEEEECCeeE-eeccccCCCCCeeccEEEEEecCCC-cEEEEEEEEcCC
Q 018029           13 AYLIKLELLAAKNLIGA----NL-NGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDI   85 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~----d~-~g~sDPyv~i~l~~~~~-rT~~i~~t~nP~W~e~f~f~v~~~~-~~L~~~V~D~d~   85 (362)
                      .|.|.++|.+|+-+...    +. ....||||.+.++.... ||   .+..||.|+|.|.+.+.... ..+.|+|.|   
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---   82 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---   82 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence            58899999999844322    11 12239999999976554 88   55669999999999998766 689999988   


Q ss_pred             CCCCceeEEEEEEeccC--CCc-ceEEEEccCCC-----C-eeEEEEEEeecc
Q 018029           86 IWKSTVLGSVIVTVESE--GQT-GAVWYTLDSPS-----G-QVCLHIKTIKLP  129 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l--~~~-~~~w~~L~~~~-----G-~i~l~l~~~~~~  129 (362)
                        ...+||.+.+++.++  +.. .+.|+++....     | ++++.+.+....
T Consensus        83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  133 (758)
T PLN02352         83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAE  133 (758)
T ss_pred             --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence              367999999999998  323 78999996432     3 455666555443

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=4.7e-06  Score=78.50  Aligned_cols=100  Identities=18%  Similarity=0.283  Sum_probs=82.2

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~   83 (362)
                      ...-+.|++++|..|..+|.+|-+||||...+.     .-+.+|.+.+++++|.|++.|.+.+...   ...+.+.|||+
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            345577999999999999999999999999884     3355899999999999999999988642   56799999999


Q ss_pred             CCCCCCceeEEEEEEeccCCCcceEEEE
Q 018029           84 DIIWKSTVLGSVIVTVESEGQTGAVWYT  111 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~~~~~~w~~  111 (362)
                      +.....+++|-..+.+....+-.++|+.
T Consensus       311 ~~G~s~d~~GG~~~g~~rr~~v~~h~gr  338 (362)
T KOG1013|consen  311 DIGKSNDSIGGSMLGGYRRGEVHKHWGR  338 (362)
T ss_pred             CCCcCccCCCcccccccccchhhcCccc
Confidence            9887889999877776665555555554

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.98  E-value=6.1e-06  Score=88.19  Aligned_cols=102  Identities=20%  Similarity=0.307  Sum_probs=84.4

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEE-ecC--C-CcEEEEEEEEc
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE--L-PVQIIVTIYDW   83 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~-v~~--~-~~~L~~~V~D~   83 (362)
                      .++|.|-|.-|++|.-...+..+||||+.++-     ..+++|+++++|.||.|||..... ++.  . .+.|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            57888999999999666667789999999983     346699999999999999998876 331  2 46799999999


Q ss_pred             CCCCCCceeEEEEEEeccCC--CcceEEEEccC
Q 018029           84 DIIWKSTVLGSVIVTVESEG--QTGAVWYTLDS  114 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~--~~~~~w~~L~~  114 (362)
                      +....+.|+|.+.++|.++.  .....||.|..
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            98888999999999999874  34458999964

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=8.5e-05  Score=75.39  Aligned_cols=100  Identities=18%  Similarity=0.321  Sum_probs=82.4

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEE-C------CeeEeeccccCCCCCeeccEEEEEecCC----CcEEEEEEEE
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITC-G------SEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYD   82 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-~------~~~~rT~~i~~t~nP~W~e~f~f~v~~~----~~~L~~~V~D   82 (362)
                      ..++|.|+.|.+|+... .|.-.|||.+.+ +      +++..|++..++..|.+||+|.|-+..+    .-.|.+.|-|
T Consensus      1125 hkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKD 1203 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKD 1203 (1283)
T ss_pred             ceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehh
Confidence            45789999999998764 677889999987 2      4456788888999999999999998743    2348999999


Q ss_pred             cCCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      +.-...|..+|-+.++|.++  .+.-..|++|..
T Consensus      1204 YCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1204 YCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred             heeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence            88777789999999999998  556678999964

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.65  E-value=6.3e-05  Score=75.76  Aligned_cols=82  Identities=24%  Similarity=0.323  Sum_probs=67.6

Q ss_pred             EeeecCCCCCCCCCCCcEEEEEEC------CeeEeeccccCCCCCeeccEEEEEec-----CCCcEEEEEEEEcCCCCCC
Q 018029           21 LAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVD-----ELPVQIIVTIYDWDIIWKS   89 (362)
Q Consensus        21 i~A~~L~~~d~~g~sDPyv~i~l~------~~~~rT~~i~~t~nP~W~e~f~f~v~-----~~~~~L~~~V~D~d~~~~d   89 (362)
                      ++|++|.++|..+++|||..+.-.      ...++|++++++++|.| ..|.+...     +....+.+.+||++..+++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w-~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~  221 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQW-APFSISLQSLCSKDGNRPIQIECYDYDSNGKH  221 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcc-cccccchhhhcccCCCCceEEEEeccCCCCCc
Confidence            568999999999999999998752      22349999999999999 44555432     4567899999999999999


Q ss_pred             ceeEEEEEEeccCC
Q 018029           90 TVLGSVIVTVESEG  103 (362)
Q Consensus        90 dfIG~~~i~L~~l~  103 (362)
                      ++||++..++.++.
T Consensus       222 ~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  222 DLIGKFQTTLSELQ  235 (529)
T ss_pred             CceeEecccHHHhc
Confidence            99999999988873

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.63  E-value=0.0001  Score=60.84  Aligned_cols=97  Identities=20%  Similarity=0.315  Sum_probs=72.9

Q ss_pred             EEEEEEeeecCCCCC-------------CCCCCCcEEEEEE----CCeeEeeccccCCCCCeeccEEEEEec--------
Q 018029           16 IKLELLAAKNLIGAN-------------LNGTSDPYAIITC----GSEKRFSSMVPGSRYPMWGEEFNFSVD--------   70 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d-------------~~g~sDPyv~i~l----~~~~~rT~~i~~t~nP~W~e~f~f~v~--------   70 (362)
                      |.|.|.+|.+|+...             ..-.-++||.+.+    +.+.++|+++.++-.|.|+-.++|.++        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            457788888886431             0112579999986    356779999999999999999999875        


Q ss_pred             C--------CCcEEEEEEEEcCCC----------CCCceeEEEEEEeccC---CCcceEEEEc
Q 018029           71 E--------LPVQIIVTIYDWDII----------WKSTVLGSVIVTVESE---GQTGAVWYTL  112 (362)
Q Consensus        71 ~--------~~~~L~~~V~D~d~~----------~~ddfIG~~~i~L~~l---~~~~~~w~~L  112 (362)
                      +        +...+.++||+.+..          .+|-.||.+.+|+.++   ..+..+||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1        124589999997632          2456899999999997   5667889875

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=97.47  E-value=0.00025  Score=74.00  Aligned_cols=83  Identities=14%  Similarity=0.287  Sum_probs=70.3

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEE-EEECCeeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCc
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAI-ITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST   90 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~-i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d~~~~dd   90 (362)
                      .|...+++++|+    |+.   .|||.. +.++.+..+|.+.++|+||+||+...|.+.+ .....++.|||++..++++
T Consensus        53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~  125 (644)
T PLN02964         53 SGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT  125 (644)
T ss_pred             cCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence            588889999988    443   588655 6779999999999999999999999999874 3344799999999999999


Q ss_pred             eeEEEEEEeccC
Q 018029           91 VLGSVIVTVESE  102 (362)
Q Consensus        91 fIG~~~i~L~~l  102 (362)
                      .+|.++++|.+.
T Consensus       126 lv~~~e~~~t~f  137 (644)
T PLN02964        126 LVGYCELDLFDF  137 (644)
T ss_pred             hhhheeecHhhc
Confidence            999999988765

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.00015  Score=69.56  Aligned_cols=104  Identities=14%  Similarity=0.254  Sum_probs=84.7

Q ss_pred             CceeEEEEEEEeeecCCCCCC-CCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEE-Ec
Q 018029           11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DW   83 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~-~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~-D~   83 (362)
                      ...|.+.|+|++|++|..+.- ...++|||.|++-  .   .+.+|+...++++|.+-+...|.-..+...|.++|| |+
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy  345 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY  345 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence            346899999999999987642 3368999999983  2   233888889999999988888888777888999999 67


Q ss_pred             CCCCCCceeEEEEEEeccCC---CcceEEEEccC
Q 018029           84 DIIWKSTVLGSVIVTVESEG---QTGAVWYTLDS  114 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~---~~~~~w~~L~~  114 (362)
                      ..+-+..|+|.+++-+++++   .....||+|-+
T Consensus       346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             cccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            77777889999999999983   35678999975

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.32  E-value=4.9e-05  Score=80.50  Aligned_cols=101  Identities=18%  Similarity=0.234  Sum_probs=81.8

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEec----------CCCcEEEEEEEE
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD----------ELPVQIIVTIYD   82 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~----------~~~~~L~~~V~D   82 (362)
                      .+.+++.+.+|+.|...|..+.+|||+.+...++.+.|.++.++++|.|++...|.--          .....+.+++||
T Consensus       205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd  284 (1105)
T KOG1326|consen  205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYD  284 (1105)
T ss_pred             hhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeeh
Confidence            4556677889999999999999999999999999999999999999999999988521          123448899999


Q ss_pred             cCCCCCCceeEEEEEEeccC-CCcceEEEEcc
Q 018029           83 WDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l-~~~~~~w~~L~  113 (362)
                      .|..+.++|+|.......-. ....-.|+++.
T Consensus       285 ~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~  316 (1105)
T KOG1326|consen  285 LDRSGINEFKGRKKQRPYVMVQCPALKWVPTM  316 (1105)
T ss_pred             hhhhchHHhhcccccceEEEecCCccceEEee
Confidence            99999999999977655433 33555677764

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=6.6e-05  Score=70.91  Aligned_cols=93  Identities=17%  Similarity=0.160  Sum_probs=76.3

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEec--CC--CcEEEEEEEEc
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVD--EL--PVQIIVTIYDW   83 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~--~~--~~~L~~~V~D~   83 (362)
                      ...+..++..|++|++++.++..|||+.+.+.     ..+.+|++..+++||.|+|......-  +.  ...+++.|.|.
T Consensus        92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn  171 (362)
T KOG1013|consen   92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN  171 (362)
T ss_pred             hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence            45678999999999999999999999999884     23468899999999999988766542  21  34588899999


Q ss_pred             CCCCCCceeEEEEEEeccCCCc
Q 018029           84 DIIWKSTVLGSVIVTVESEGQT  105 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~~~  105 (362)
                      +.+..++++|+..+.+..+.+.
T Consensus       172 ~~~~~~~sqGq~r~~lkKl~p~  193 (362)
T KOG1013|consen  172 DKKTHNESQGQSRVSLKKLKPL  193 (362)
T ss_pred             cccccccCcccchhhhhccChh
Confidence            9998899999999988887443

>PF14470 bPH_3: Bacterial PH domain

Probab=97.17  E-value=0.0062  Score=47.60  Aligned_cols=89  Identities=18%  Similarity=0.185  Sum_probs=67.9

Q ss_pred             cCCCcceeeeehhhhhhc-cccceeEEEecceEEEeecC-CCceeEEEeecccceEEEEeccccccCcEEEEEecCCCCC
Q 018029          171 LLPDEFVELSYSCVIERS-FLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGH  248 (362)
Q Consensus       171 lp~~E~l~~~~~c~l~~~-~~~~G~lyis~~~~cF~S~~-~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~~~~~~  248 (362)
                      |.++|.+.....|.+... -...|-+.+|+..+-|.+.- ++......|||++|.+|+-.+.. +...|.|.+       
T Consensus         1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~-------   72 (96)
T PF14470_consen    1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET-------   72 (96)
T ss_pred             CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-------
Confidence            457888888888887642 23349999998888888754 67788899999999999998764 456788877       


Q ss_pred             CCCCCCCCCCceeEEEeeeechHHHHHHH
Q 018029          249 GVPPLGSPDGRVRYKFASFWNRNHALRQL  277 (362)
Q Consensus       249 ~~~~~~~~~~~~~~~F~sf~~rd~~~~~l  277 (362)
                               +++++.|.++ +.+++-.+.
T Consensus        73 ---------~~~~~~i~~i-~k~~~~~~~   91 (96)
T PF14470_consen   73 ---------NGEKIKIDNI-QKGDVKEFY   91 (96)
T ss_pred             ---------CCEEEEEEEc-CHHHHHHHH
Confidence                     3479999988 666654443

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.15  E-value=0.00059  Score=52.67  Aligned_cols=92  Identities=20%  Similarity=0.242  Sum_probs=66.5

Q ss_pred             EEEEeeecCCCCCCCCC-CCcEEE--EEECC-eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCc
Q 018029           18 LELLAAKNLIGANLNGT-SDPYAI--ITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKST   90 (362)
Q Consensus        18 V~Vi~A~~L~~~d~~g~-sDPyv~--i~l~~-~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~~~dd   90 (362)
                      ++|+.|++|.-....|. +.-|+.  +.+.+ ...+|+..+...||.|.|+|.|.+..   ....|.|.||.  ...+.+
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe   80 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR   80 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence            78999999975543332 223443  22333 34588888899999999999998863   24569999998  445678


Q ss_pred             eeEEEEEEeccCC-CcceEEEE
Q 018029           91 VLGSVIVTVESEG-QTGAVWYT  111 (362)
Q Consensus        91 fIG~~~i~L~~l~-~~~~~w~~  111 (362)
                      .||.+.+.+.+++ +..++|..
T Consensus        81 ~iG~~sL~l~s~geeE~~HW~e  102 (103)
T cd08684          81 TIGECSLSLRTLSTQETDHWLE  102 (103)
T ss_pred             eeeEEEeecccCCHHHhhhhhc
Confidence            9999999999985 45667765

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=96.76  E-value=0.0014  Score=52.79  Aligned_cols=87  Identities=22%  Similarity=0.330  Sum_probs=59.6

Q ss_pred             eeeehhhhhh-ccccceeEEEecceEEEeec---------------CCCceeEEEeecccceEEEEeccccccCcEEEEE
Q 018029          178 ELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDEIQRSQHAFINPAITIIL  241 (362)
Q Consensus       178 ~~~~~c~l~~-~~~~~G~lyis~~~~cF~S~---------------~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~  241 (362)
                      .-++.|.+.. ...+.|.+.++.+++.|..+               .........+|+.||..|.+-.-..=.-||+|.+
T Consensus         3 ~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF~   82 (106)
T PF14844_consen    3 LLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIFF   82 (106)
T ss_dssp             SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEEE
Confidence            4467888877 44567999999999999876               3334556789999999999877543334999999


Q ss_pred             ecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHH
Q 018029          242 RMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQL  277 (362)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l  277 (362)
                      .+|             ....+.|.+...||++|+.|
T Consensus        83 ~dg-------------~s~f~~F~~~~~R~~v~~~l  105 (106)
T PF14844_consen   83 SDG-------------RSYFFNFESKKERDEVYNKL  105 (106)
T ss_dssp             TTS--------------EEEEE-SSHHHHHHHHCCS
T ss_pred             cCC-------------cEEEEEcCCHHHHHHHHHhh
Confidence            764             33455555667788877644

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.89  E-value=0.077  Score=46.67  Aligned_cols=101  Identities=21%  Similarity=0.229  Sum_probs=66.9

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee----EeeccccCCCCCeeccEEEEEec--C--CCcEEEEEEEEc
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDW   83 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~----~rT~~i~~t~nP~W~e~f~f~v~--~--~~~~L~~~V~D~   83 (362)
                      ..+.|+|+.+.+|...  ...++-||.+.+  +.+.    ..|..+..+..+.|+|.+.|++.  +  ...+|.|+||+.
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            4678999999998752  234566777654  4332    25555554567999999999765  3  356799999997


Q ss_pred             CCCC----------------CCceeEEEEEEeccCCCcceEEEEccCCCCeeEEEEE
Q 018029           84 DIIW----------------KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK  124 (362)
Q Consensus        84 d~~~----------------~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~i~l~l~  124 (362)
                      ....                +...||.+.++|-+-..      .|  +.|...+.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~------~L--r~G~~~L~lW  134 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG------QL--KTGDHTLYMW  134 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEcccc------hh--hcCCeEEEec
Confidence            6422                24688999888876432      12  3566666654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.73  E-value=0.11  Score=45.08  Aligned_cols=100  Identities=17%  Similarity=0.218  Sum_probs=67.3

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee----EeeccccCCCCCeeccEEEEEec--C--CCcEEEEEEEEc
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDW   83 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~----~rT~~i~~t~nP~W~e~f~f~v~--~--~~~~L~~~V~D~   83 (362)
                      ..++|+++++.++.-.   ..+|-||.+.+  +.+.    ..|..+.. .++.|||...|++.  +  ...+|.|++|+.
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            4578999999998754   34688888765  3332    24444443 57999999999875  2  366899999997


Q ss_pred             CCCC----CCceeEEEEEEeccCCCcceEEEEccCCCCeeEEEEEE
Q 018029           84 DIIW----KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKT  125 (362)
Q Consensus        84 d~~~----~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~i~l~l~~  125 (362)
                      ....    ....+|.+.++|-+-.+      .|  +.|...+++..
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~~~------~L--r~G~~~L~lW~  121 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDYTD------TL--VSGKMALNLWP  121 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECCCC------hh--hCCCEEEEEEc
Confidence            6421    22579999999877532      12  25666666653

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=95.52  E-value=0.19  Score=39.21  Aligned_cols=85  Identities=13%  Similarity=0.270  Sum_probs=60.3

Q ss_pred             CCCCcEEEEEECCeeE-eeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEeccCCCcceEEEE
Q 018029           33 GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT  111 (362)
Q Consensus        33 g~sDPyv~i~l~~~~~-rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~  111 (362)
                      |.++-.+++.+++... +|.-.. ..+..|++.|.+++.. .++|.+.||-.|-   ..+.|-..+.|++...  ..-.+
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~~--~~~~~   79 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDERH--EVQLD   79 (98)
T ss_pred             cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhcc--cceec
Confidence            4478899999987654 665443 3578999999999986 6789999998764   2466777778877432  34455


Q ss_pred             ccCCCCeeEEEEEE
Q 018029          112 LDSPSGQVCLHIKT  125 (362)
Q Consensus       112 L~~~~G~i~l~l~~  125 (362)
                      |.+ .|.+...+++
T Consensus        80 lep-qg~l~~ev~f   92 (98)
T cd08687          80 MEP-QLCLVAELTF   92 (98)
T ss_pred             ccc-ccEEEEEEEe
Confidence            665 6777666654

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.37  E-value=0.085  Score=45.76  Aligned_cols=85  Identities=19%  Similarity=0.239  Sum_probs=59.2

Q ss_pred             CCCCCcEEEEEE--CCee----EeeccccCCCCCeeccEEEEEec----CCCcEEEEEEEEcCCCCCCceeEEEEEEecc
Q 018029           32 NGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES  101 (362)
Q Consensus        32 ~g~sDPyv~i~l--~~~~----~rT~~i~~t~nP~W~e~f~f~v~----~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~  101 (362)
                      ...+|-||.+.+  ++..    .+|..+.-+..+.|||...|++.    +....|.|+|||.+..++...+|.++++|-+
T Consensus        27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            345788888766  3332    25655555667899999999875    2367899999999876667899999999977


Q ss_pred             CCCcceEEEEccCCCCeeEEEEE
Q 018029          102 EGQTGAVWYTLDSPSGQVCLHIK  124 (362)
Q Consensus       102 l~~~~~~w~~L~~~~G~i~l~l~  124 (362)
                      -.+      .|  +.|...+.+.
T Consensus       107 ~~g------~L--r~G~~~l~lw  121 (159)
T cd08397         107 KDG------TL--RRGRQKLRVW  121 (159)
T ss_pred             CCC------cE--ecCCEEEEEE
Confidence            532      12  2566656554

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=95.35  E-value=0.019  Score=56.05  Aligned_cols=114  Identities=10%  Similarity=0.117  Sum_probs=79.0

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---C---------cEE
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---P---------VQI   76 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~---------~~L   76 (362)
                      ..|.+.|+++.+++-....-.-|-|+.+...     .++.+|.+++++.+|.|++.|.+.+...   +         ..+
T Consensus       367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~  446 (523)
T KOG3837|consen  367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK  446 (523)
T ss_pred             hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence            3456777788777543322224667777652     3456999999999999999999988641   1         129


Q ss_pred             EEEEEEcCCC-CCCceeEEEEEEeccCC--CcceEEEEccC----CCCeeEEEEEEee
Q 018029           77 IVTIYDWDII-WKSTVLGSVIVTVESEG--QTGAVWYTLDS----PSGQVCLHIKTIK  127 (362)
Q Consensus        77 ~~~V~D~d~~-~~ddfIG~~~i~L~~l~--~~~~~w~~L~~----~~G~i~l~l~~~~  127 (362)
                      +|++|....+ ..|.++|.+.+.|..+.  ......++|..    -+|.+.+.+++..
T Consensus       447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~  504 (523)
T KOG3837|consen  447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQ  504 (523)
T ss_pred             eEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEec
Confidence            9999998754 35789999999999873  33445666643    2477766666553

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.34  E-value=0.045  Score=58.14  Aligned_cols=98  Identities=18%  Similarity=0.228  Sum_probs=72.5

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-C------CeeEeecccc-CCCCCeecc-EEEEEec--CCCcEEEEEE
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-G------SEKRFSSMVP-GSRYPMWGE-EFNFSVD--ELPVQIIVTI   80 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-~------~~~~rT~~i~-~t~nP~W~e-~f~f~v~--~~~~~L~~~V   80 (362)
                      ..+.+.|+|+++.-|.+++    ...||.|.+ +      ...+||+++. ++.||+|+| .|.|.--  +.-..|+|.|
T Consensus       701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav  776 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV  776 (1189)
T ss_pred             EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence            3688999999999998776    348999987 2      2445888876 679999985 5777532  3355699999


Q ss_pred             EEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        81 ~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      |+...    .|||+--+++..+..+ -+.+.|.+..++
T Consensus       777 yeEgg----K~ig~RIlpvd~l~~G-Yrhv~LRse~Nq  809 (1189)
T KOG1265|consen  777 YEEGG----KFIGQRILPVDGLNAG-YRHVCLRSESNQ  809 (1189)
T ss_pred             eccCC----ceeeeeccchhcccCc-ceeEEecCCCCC
Confidence            99754    5999999999998655 344566554443

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.27  E-value=0.14  Score=43.93  Aligned_cols=88  Identities=19%  Similarity=0.255  Sum_probs=59.2

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee----EeeccccCCCCCeeccEEEEEec--C--CCcEEEEEEEEc
Q 018029           14 YLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDW   83 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~----~rT~~i~~t~nP~W~e~f~f~v~--~--~~~~L~~~V~D~   83 (362)
                      ..+.|++....++...+ ....+-||.+.+  +.+.    ..|.....+.++.|||...|++.  .  ...+|.+++|+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            35677777777765411 234566676655  3321    23433333467999999999864  2  356799999998


Q ss_pred             CCCC--CCceeEEEEEEeccC
Q 018029           84 DIIW--KSTVLGSVIVTVESE  102 (362)
Q Consensus        84 d~~~--~ddfIG~~~i~L~~l  102 (362)
                      +..+  ++..||.+.++|-+.
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcc
Confidence            7654  467999999999775

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.21  E-value=0.35  Score=47.10  Aligned_cols=97  Identities=21%  Similarity=0.296  Sum_probs=77.3

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC--------CCcEEEEEEEEcC-CC
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II   86 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~--------~~~~L~~~V~D~d-~~   86 (362)
                      +.|.|++|++.+...   ...-.+.-++++....|..+..+-.|.|+.+...+++.        ..++|++++|..| ..
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            568999999997652   23445566788999999999999999999999998862        2567999999998 55


Q ss_pred             CCCceeEEEEEEeccC---C----CcceEEEEccCC
Q 018029           87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP  115 (362)
Q Consensus        87 ~~ddfIG~~~i~L~~l---~----~~~~~w~~L~~~  115 (362)
                      +..+.||.+-++|...   .    .....||+|.+-
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~  114 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS  114 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence            5678999999999886   2    235689999753

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=94.85  E-value=0.08  Score=50.14  Aligned_cols=114  Identities=13%  Similarity=0.126  Sum_probs=75.1

Q ss_pred             CceeEEEEEEEeeecCCCCC--CCCCCCcEEEEEECCe-eEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 018029           11 NSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d--~~g~sDPyv~i~l~~~-~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~   87 (362)
                      ...|.|-++++.+++|+-..  .+-+-+-||++.++.+ +.||.+-....--.|.|.|..++.. ...+.+-||.|+.-.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~  126 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR  126 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence            45688999999999996443  2456789999998755 3466655555555789999998875 567889999998766


Q ss_pred             CCceeEEEEEEeccC-CCcceEEEE--ccCCCCeeEEEEEEe
Q 018029           88 KSTVLGSVIVTVESE-GQTGAVWYT--LDSPSGQVCLHIKTI  126 (362)
Q Consensus        88 ~ddfIG~~~i~L~~l-~~~~~~w~~--L~~~~G~i~l~l~~~  126 (362)
                      .+.+.-..-+.+..+ ....++.+.  |++ .|++.+++...
T Consensus       127 RHKLC~~g~l~~~~v~rqspd~~~Al~leP-rgq~~~r~~~~  167 (442)
T KOG1452|consen  127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-RGQPPLRLPLA  167 (442)
T ss_pred             hccccccchhhhhhhhhcCCcceeeeeccc-CCCCceecccC
Confidence            565433333333333 233333333  444 68777766543

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=94.77  E-value=0.52  Score=40.64  Aligned_cols=92  Identities=18%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             CceeEEEEEEEeeecCCCCCC--CCCCCcEEEE--EECCeeEeeccccCCCCCeeccEEEEEecCC--------------
Q 018029           11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAII--TCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL--------------   72 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~--~g~sDPyv~i--~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~--------------   72 (362)
                      +....|.+.|+.++-...--.  -+..+....+  .++++.++|..+..+.+|.|++.|.|++...              
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            445678899988885433211  0344444444  4478999999999999999999999998632              


Q ss_pred             CcEEEEEEEEcCCCCCCceeEEEEEEeccC
Q 018029           73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (362)
Q Consensus        73 ~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l  102 (362)
                      .+++.+.|--.|..+...++|+-.+....+
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~v  115 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKV  115 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHH
Confidence            245788887777766668899988888876

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.49  E-value=0.2  Score=43.93  Aligned_cols=90  Identities=14%  Similarity=0.144  Sum_probs=63.4

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee----Eeecccc--C--CCCCeeccEEEEEec----CCCcEEEE
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVP--G--SRYPMWGEEFNFSVD----ELPVQIIV   78 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~----~rT~~i~--~--t~nP~W~e~f~f~v~----~~~~~L~~   78 (362)
                      ...+.|+|.++.+++........|-|+.+.+  +.+.    ..|+...  +  ...+.|||...|++.    +...+|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            4568899999999987765556788888866  4332    2333221  1  235779999999875    23567999


Q ss_pred             EEEEcCCCC---------CCceeEEEEEEeccC
Q 018029           79 TIYDWDIIW---------KSTVLGSVIVTVESE  102 (362)
Q Consensus        79 ~V~D~d~~~---------~ddfIG~~~i~L~~l  102 (362)
                      ++|+....+         ++..||.+.++|-+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999986543         357899999998775

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=93.20  E-value=1  Score=38.08  Aligned_cols=55  Identities=29%  Similarity=0.335  Sum_probs=40.8

Q ss_pred             eeccccCC-CCCeeccEEEEEec----CCCcEEEEEEEEcCCCCCC----ceeEEEEEEeccCC
Q 018029           49 FSSMVPGS-RYPMWGEEFNFSVD----ELPVQIIVTIYDWDIIWKS----TVLGSVIVTVESEG  103 (362)
Q Consensus        49 rT~~i~~t-~nP~W~e~f~f~v~----~~~~~L~~~V~D~d~~~~d----dfIG~~~i~L~~l~  103 (362)
                      .|....-+ .++.|+|...|.+.    +....|.|+||+.+.....    ..||.+.++|-+..
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~   86 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR   86 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence            56555555 79999999999874    3467899999998876555    69999999987763

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.01  E-value=1  Score=39.75  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee---EeeccccCCCCCeeccEEEEEec--C--CCcEEEEEEEEcCC
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK---RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWDI   85 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~---~rT~~i~~t~nP~W~e~f~f~v~--~--~~~~L~~~V~D~d~   85 (362)
                      .++|+|..+..+ ..+......-||.+.+  +...   .+|....-+.+|.|||...|++.  +  ...+|.|+||+...
T Consensus        11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            567787777633 3222222334555443  3322   25666666677999999988865  2  36689999999742


Q ss_pred             CC----------------CCceeEEEEEEeccCCCcceEEEEccCCCCeeEEEEEEee
Q 018029           86 IW----------------KSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIK  127 (362)
Q Consensus        86 ~~----------------~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~i~l~l~~~~  127 (362)
                      ..                .+..||.+.+.|-+-..      .|  +.|+..+++.-.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~------~L--r~G~~~L~~W~~~  139 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF------LL--RTGEYVLHMWQIS  139 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcCCC------ce--ecCCEEEEEecCC
Confidence            21                13466777777655422      11  3566666665433

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=91.81  E-value=6.7  Score=32.65  Aligned_cols=113  Identities=18%  Similarity=0.273  Sum_probs=68.3

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCee---Eeecccc-CCCCCeeccEEEEEec----C-----CCcEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMVP-GSRYPMWGEEFNFSVD----E-----LPVQII   77 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~---~rT~~i~-~t~nP~W~e~f~f~v~----~-----~~~~L~   77 (362)
                      .....+.|.+.+..+++.    ...--||....+...   ..|+... .+..-.|++.|.+.+.    .     ....+.
T Consensus         4 ~~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~   79 (143)
T PF10358_consen    4 AVKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK   79 (143)
T ss_pred             eeeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence            345678899999998876    122334444444332   3443333 4455789999998764    1     133489


Q ss_pred             EEEEEcCCCCCCceeEEEEEEeccC-C---CcceEEEEccCC-CC--eeEEEEEEee
Q 018029           78 VTIYDWDIIWKSTVLGSVIVTVESE-G---QTGAVWYTLDSP-SG--QVCLHIKTIK  127 (362)
Q Consensus        78 ~~V~D~d~~~~ddfIG~~~i~L~~l-~---~~~~~w~~L~~~-~G--~i~l~l~~~~  127 (362)
                      |.|+.....++...+|.+.++|++. .   .....-+.|... ..  .+.+.|....
T Consensus        80 ~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~  136 (143)
T PF10358_consen   80 FSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE  136 (143)
T ss_pred             EEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence            9999875433336899999999996 2   234455666542 33  3444444433

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=90.47  E-value=1.8  Score=41.79  Aligned_cols=100  Identities=23%  Similarity=0.265  Sum_probs=73.6

Q ss_pred             ccCCCcceeeeehhhhhhcccc--ceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCcEEEEEecCCCC
Q 018029          170 NLLPDEFVELSYSCVIERSFLY--HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGG  247 (362)
Q Consensus       170 ~lp~~E~l~~~~~c~l~~~~~~--~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~~~~~  247 (362)
                      .+-++|.+.+.+.-.|.-+-..  -|.+++|+-.+.||++.- ..-.+.|||-.|.+|....+ .+++|++|.|...+| 
T Consensus       150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~n-e~fNVSiPylqi~~i~ir~S-KfG~aLVieT~~~sG-  226 (339)
T PF07289_consen  150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMN-ESFNVSIPYLQIKSIRIRDS-KFGPALVIETSESSG-  226 (339)
T ss_pred             eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCC-ccccccchHhhheeeeeecc-ccceEEEEEEeccCC-
Confidence            4557788888888888663221  199999999999999874 35678999999999977665 789999999976444 


Q ss_pred             CCCCCCCCCCCceeEEEeeeech----HHHHHHHHHHHHHHH
Q 018029          248 HGVPPLGSPDGRVRYKFASFWNR----NHALRQLQRTAKNYH  285 (362)
Q Consensus       248 ~~~~~~~~~~~~~~~~F~sf~~r----d~~~~~l~~~~~~~~  285 (362)
                                   .|...==++-    ++.|+-|..+|+.+.
T Consensus       227 -------------gYVLGFRvDP~ErL~~l~KEi~sLh~vy~  255 (339)
T PF07289_consen  227 -------------GYVLGFRVDPEERLQELFKEIQSLHKVYS  255 (339)
T ss_pred             -------------cEEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence                         5665544441    456666667776554

It consists of eukaryotic proteins of around 375 residues in length.

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=90.25  E-value=2  Score=33.99  Aligned_cols=70  Identities=19%  Similarity=0.215  Sum_probs=45.2

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEE--CCee----EeeccccCCCCCeeccEEEEEec----CCCcEEEEEEEEcCC
Q 018029           16 IKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWDI   85 (362)
Q Consensus        16 L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~~----~rT~~i~~t~nP~W~e~f~f~v~----~~~~~L~~~V~D~d~   85 (362)
                      +.+.+....+.........++-||.+.+  +++.    ..|..+.-+..+.|||...|++.    +....|.+++|+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            4456666666554433333578888866  4332    25555554566899999999765    235679999999754

Outlier of C2 family.

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=89.42  E-value=1.2  Score=34.75  Aligned_cols=49  Identities=20%  Similarity=0.431  Sum_probs=33.5

Q ss_pred             ceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCcEEEEE
Q 018029          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIIL  241 (362)
Q Consensus       192 ~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~  241 (362)
                      .|++|+|.+.+||.-+.-.....+.||+.+|..++....++ .-+-.|++
T Consensus        37 ~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~-~sSpKI~l   85 (89)
T PF11605_consen   37 NGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL-KSSPKIIL   85 (89)
T ss_dssp             CEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT-SSS-EEEE
T ss_pred             CCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc-CCCCeEEE
Confidence            39999999999997544333446999999999996665443 44544444

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function

Probab=88.60  E-value=1.4  Score=35.94  Aligned_cols=66  Identities=17%  Similarity=0.183  Sum_probs=49.0

Q ss_pred             ccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEecc--ccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEe
Q 018029          188 SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH--AFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFA  265 (362)
Q Consensus       188 ~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~  265 (362)
                      .+.-+|++.+..+-+=||.+.-. +-=+-|||.+|..|.-.-.  ...+|...|.|+.               +-+|.|+
T Consensus        20 g~~~yGkimiGDkaFEFyn~~n~-~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~---------------~G~f~Fs   83 (118)
T PF06115_consen   20 GLGKYGKIMIGDKAFEFYNDRNV-EDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKK---------------NGKFTFS   83 (118)
T ss_pred             cccccCeEEEcccceEeecCCCh-hhcEEeChhheeEEEEEEEECCCEEeeEEEEECC---------------CCEEEEE
Confidence            34467999999988888876533 4458999999999987765  2456778888864               2389998


Q ss_pred             eeec
Q 018029          266 SFWN  269 (362)
Q Consensus       266 sf~~  269 (362)
                      |=-+
T Consensus        84 skd~   87 (118)
T PF06115_consen   84 SKDS   87 (118)
T ss_pred             ECCh
Confidence            7544

>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity

Probab=88.47  E-value=2.9  Score=31.76  Aligned_cols=61  Identities=21%  Similarity=0.428  Sum_probs=40.8

Q ss_pred             eeEEEecce--EEEeecCCCceeEEEeecccceEEEEeccccccC--cEEEEEecCCCCCCCCCCCCCCCceeEEEe
Q 018029          193 GRMYVSAWH--ICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP--AITIILRMGAGGHGVPPLGSPDGRVRYKFA  265 (362)
Q Consensus       193 G~lyis~~~--~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~  265 (362)
                      |.||++...  +-|...--+....+.||+.+|...+-+...  .+  -+.|+.+.+.          ......|.|+
T Consensus        14 G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~--s~Kv~Lki~~~~~~----------~~~~~~f~F~   78 (79)
T PF08567_consen   14 GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEG--SPKVMLKIVLKDDS----------SEESKTFVFT   78 (79)
T ss_dssp             EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TT--SSTEEEEEEETTSC-------------CCCEEE-
T ss_pred             cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCC--CcceEEEEEEecCC----------cccceEEEEe
Confidence            999999999  999886544444799999999998766643  23  4667765431          1245678886

The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain

Probab=88.38  E-value=0.62  Score=37.52  Aligned_cols=87  Identities=18%  Similarity=0.222  Sum_probs=58.2

Q ss_pred             ceeeeehhhhhh-ccccceeEEEecceEEEeecC----C-Ccee---------EEEeecccceEEEEeccccccCcEEEE
Q 018029          176 FVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----F-SRQM---------KVIIPIGDIDEIQRSQHAFINPAITII  240 (362)
Q Consensus       176 ~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~S~~----~-g~~~---------k~~ip~~di~~i~k~~~~~~~~~i~i~  240 (362)
                      .++-+..|.+.. -....|++-||..++.|.-+.    + +...         ...+|+++|.+|.+-.-..=.-|++|.
T Consensus         2 ~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF   81 (108)
T cd01201           2 PVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALELF   81 (108)
T ss_pred             CeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEEE
Confidence            344556777777 344569999999999999641    1 1111         227899999999887754434499999


Q ss_pred             EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHH
Q 018029          241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQ  278 (362)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~  278 (362)
                      ...|                .=.|-+|-+++....++.
T Consensus        82 ~~d~----------------~~~f~~F~~~~~~k~vv~  103 (108)
T cd01201          82 LASR----------------TSIFFAFPDQNAVKKVVY  103 (108)
T ss_pred             EeCC----------------ceEEEEeCcHHHHHHHHh
Confidence            9542                334445777777666653

Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=87.72  E-value=3.1  Score=36.74  Aligned_cols=54  Identities=13%  Similarity=0.242  Sum_probs=33.8

Q ss_pred             EeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCC---ceeEEEEEEecc
Q 018029           48 RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKS---TVLGSVIVTVES  101 (362)
Q Consensus        48 ~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~~~d---dfIG~~~i~L~~  101 (362)
                      ..|.+...+.+|.|+|+|.+.++.   ....|.|++|+.....+.   ..+|-+.++|.+
T Consensus        61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            367777788999999999999984   255699999997643322   689999999887

>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function

Probab=85.05  E-value=2.1  Score=44.74  Aligned_cols=82  Identities=13%  Similarity=0.248  Sum_probs=57.9

Q ss_pred             eehhhhhhccccceeEEEe----cceEEEeecC------------CCceeEEEeecccceEEEEeccccc----------
Q 018029          180 SYSCVIERSFLYHGRMYVS----AWHICFHSNA------------FSRQMKVIIPIGDIDEIQRSQHAFI----------  233 (362)
Q Consensus       180 ~~~c~l~~~~~~~G~lyis----~~~~cF~S~~------------~g~~~k~~ip~~di~~i~k~~~~~~----------  233 (362)
                      .|.|-|+.+   .|.+||+    .-.++|.+.-            -....-..||+.||.+++|......          
T Consensus       520 ~F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~  596 (642)
T PF11696_consen  520 EFPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWAL  596 (642)
T ss_pred             eeeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeec
Confidence            466777664   3999999    4467887751            1234558999999999999875321          


Q ss_pred             -----cCcEEEE-EecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 018029          234 -----NPAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR  279 (362)
Q Consensus       234 -----~~~i~i~-~~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~  279 (362)
                           ..+++|+ ++               ..+.|.++....||+.|+.|-.
T Consensus       597 g~kEv~DGL~I~g~~---------------~g~~y~lTA~~~RDeLFNRLiA  633 (642)
T PF11696_consen  597 GEKEVVDGLVIVGDE---------------PGQEYHLTAMPRRDELFNRLIA  633 (642)
T ss_pred             CCcccccceEEeccC---------------CCCEEEEEecchHHHHHHHHHh
Confidence                 1234444 32               3369999999999999998854

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=84.67  E-value=11  Score=32.94  Aligned_cols=68  Identities=19%  Similarity=0.234  Sum_probs=51.6

Q ss_pred             CCCcEEEEEECCeeE-eeccccC--CCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEeccC
Q 018029           34 TSDPYAIITCGSEKR-FSSMVPG--SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (362)
Q Consensus        34 ~sDPyv~i~l~~~~~-rT~~i~~--t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfIG~~~i~L~~l  102 (362)
                      +..-|+++.++++.. +|+...-  ...=.|++.|.+.+..-+..|.++||.... ..+..|+++.+++-..
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~  106 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGS  106 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence            345788888876654 5554432  233457899999998888999999999887 5788999999998765

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=81.19  E-value=15  Score=32.83  Aligned_cols=55  Identities=13%  Similarity=0.146  Sum_probs=40.4

Q ss_pred             eEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC--CceeEEEEEEecc
Q 018029           47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK--STVLGSVIVTVES  101 (362)
Q Consensus        47 ~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~~~--ddfIG~~~i~L~~  101 (362)
                      ..+|-+...+.+|.|+|++.+.++.   ....|.|++++.....+  ...+|-+.++|-+
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            3478888888999999999999973   35569998888543211  2567877777754

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=81.07  E-value=17  Score=32.60  Aligned_cols=55  Identities=15%  Similarity=0.097  Sum_probs=40.2

Q ss_pred             eEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC-CC---CceeEEEEEEecc
Q 018029           47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-WK---STVLGSVIVTVES  101 (362)
Q Consensus        47 ~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~~-~~---ddfIG~~~i~L~~  101 (362)
                      ..+|-+...+.+|.|+|++.+.++.   ....|.|++++.... .+   ...+|-+.++|-.
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~  115 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQ  115 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeec
Confidence            3477777788999999999999973   356799999886421 12   2467877777753

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	362
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		5e-08
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		1e-05
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		3e-05
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		3e-05
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		5e-05
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		2e-04
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		2e-04
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		3e-04
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		7e-04

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138
Query: 119 VCLHI 123
           + LHI
Sbjct: 139 IRLHI 143

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 181 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L
Sbjct: 241 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 278

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 40  AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 137

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVES--EGQ 104
            + VT++D D       LG V + + S  +GQ
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++  G    P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
           ++   I+D D+  +   +G   + +E
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLE 97

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQ 75
           AKNLI  + NG SDPY  +          K+ +  +  +  P W E F F +   +   +
Sbjct: 26  AKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRR 85
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
           + V I+DWD   ++  +GS+   V E      + WY L
Sbjct: 86  LSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKL 123

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQ 75
           AKNLI  + NG SDPY  +          K+ +  +  +  P W E F F +   +   +
Sbjct: 25  AKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRR 84
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
           + V I+DWD   ++  +GS+   V E      + WY L
Sbjct: 85  LSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKL 122

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQ 75
           AKNLI  + NG SDPY  +          K+ +  +  +  P W E F F +   +   +
Sbjct: 27  AKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRR 86
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
           + V I+DWD   ++   GS+   V E      + WY L
Sbjct: 87  LSVEIWDWDRTTRNDFXGSLSFGVSELXKXPASGWYKL 124

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRY-----PMWGEEFNFSV--DEL 72
           +L AKNL   ++ G SDPY  I      +       +       P + E F+F V  +++
Sbjct: 156 ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI 215
Query: 73  -PVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVW 109
             VQ++VT+ D+D I K+  +G V V   S G     W
Sbjct: 216 QKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 253

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	8e-27
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	3e-26
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-21
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-18
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	6e-18
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	2e-17
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	7e-17
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	7e-17
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-16
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	4e-16
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	6e-16
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	4e-15
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	1e-14
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	3e-14
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	6e-14
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-10
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-09
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-13
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	4e-13
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	4e-13
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	7e-13
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	7e-13
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	9e-13
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-12
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-12
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-12
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	6e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	6e-12
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	6e-11
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	3e-10
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	9e-10
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-09
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-09
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	3e-09
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	3e-09
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	4e-09
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	9e-09
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-08
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-07
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	1e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  102 bits (256), Expect = 8e-27
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELP 73
            +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E  
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70

Query: 74  VQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
            ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 71  TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  101 bits (253), Expect = 3e-26
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLDS------PSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD        SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138

Query: 119 VCLHIK 124
           + LHI 
Sbjct: 139 IRLHIS 144

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 88.5 bits (220), Expect = 1e-21
 Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIK 124
            + VT++D D       LG V + + S        Y L +        G + L + 
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 129

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 81.1 bits (200), Expect = 2e-18
 Identities = 13/116 (11%), Positives = 38/116 (32%), Gaps = 6/116 (5%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF 67
                   +++ +++AK            PY  +T   + + +     +  P W +    
Sbjct: 30  GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV-----ESEGQTGAVWYTLDSPSGQ 118
            V  +  ++   ++    +    +LG+  + +      +  +   V  TL     +
Sbjct: 90  IVTPVS-KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK 144

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 78.3 bits (193), Expect = 6e-18
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES----EGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E       +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNLI---GANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +   +       +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D     ++ +T+ D + +     LG+   TV S   G+   V +  +    ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFN-QVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 75.1 bits (185), Expect = 7e-17
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           I+L +L AKNL   +     DP+A I      +   +  V  +  P W + ++  V +  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK-T 65

Query: 74  VQIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGA-VWYTLDSP----------SGQV 119
             I +++++   I K   +  LG V +   +  +     +  LD             GQ+
Sbjct: 66  DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQI 125

Query: 120 CLHIKT 125
            + ++T
Sbjct: 126 VVSLQT 131

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 74.2 bits (182), Expect = 3e-16
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 19/127 (14%)

Query: 15  LIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEKRFSSMV-PGSRYPMWGE 63
            +++ +  A  L               +   DPY  ++    +   +     +  P + E
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89

Query: 64  EFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES------EGQTGAVWYTLDSPSG 117
           EF  +V +    + + ++    +     + +  +  +          T   W  L+ P G
Sbjct: 90  EFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-PEG 147

Query: 118 QVCLHIK 124
           +V + I 
Sbjct: 148 KVFVVIT 154

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++ + +A N+      G  DP   +    EK+ +  V     P+W E   F +  +P+
Sbjct: 8   MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66

Query: 75  Q----IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS--------GQVC 120
                + + + D++ I ++ ++G+  V ++     Q+ ++ Y L S            + 
Sbjct: 67  DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATID 126

Query: 121 LHIK 124
           L I 
Sbjct: 127 LVIG 130

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 73.2 bits (180), Expect = 6e-16
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +   +
Sbjct: 36  VVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 95

Query: 72  LPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 96  KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 141

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 70.9 bits (174), Expect = 4e-15
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSM------VPGSRYPMWGEEFNFS 68
           ++++ ++A   L   ++ G SDPY  +T                +  S  P W EE  F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAV-----WYTLDSPS---- 116
           V     +++  ++D + + +   LG V V    + +E            + L   S    
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSR 140

Query: 117 --GQVCLHIK 124
             G + L + 
Sbjct: 141 VKGYLRLKMT 150

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 70.3 bits (172), Expect = 1e-14
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFS 68
           +++++++A   L   ++ G SDPY  +T             +  +  S  P W EE  F 
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS----------- 114
           V     +I+  ++D + + +   LG V V    + +E       YT              
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR 128

Query: 115 PSGQVCLHIK 124
             G + L + 
Sbjct: 129 VKGYLRLKMT 138

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 20/118 (16%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII--------------TCGSEKRFSSMVPGSRYPMWGEE 64
            +L A+NL+  + NG SDP+  +                   KR +  V  S  P W + 
Sbjct: 23  HILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82

Query: 65  FNF---SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
             +   S+++L  + + VT++D+D    +  LG V++ + S         WY L   +
Sbjct: 83  VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 70.6 bits (173), Expect = 6e-14
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 13/144 (9%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   F V 
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV-WY-TLDSPSGQVCL-HIK 124
            + +  V + + + D+D I  + V+G   V  E+    G   W   L +P   V   H  
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWH-- 271

Query: 125 TIKLPVNASRVMNGYAGANARRRA 148
            +      S    G  G + +  +
Sbjct: 272 QLVEEKTLSSFTKGGKGLSEKENS 295

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           +L A +L   + NG SDPY  I       +K  + +   +  P++ E F FSV   EL  
Sbjct: 26  ILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQ 85

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE----GQTGAVWYTLDSPSGQVCLHIK 124
           + +  ++YD+D   +  ++G V++    E         +W  +     +     +
Sbjct: 86  RKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGE 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 40  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114
           + + + +YD+D   K  ++G   V + +   G     W  L S
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 68.3 bits (167), Expect = 3e-13
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPG 55
               +  P       + + +L AKNL   ++ G SDPY  I         +K+ +++   
Sbjct: 140 CFSLRYVPTAG---KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 196

Query: 56  SRYPMWGEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-T 111
           +  P + E F+F V  +++  VQ++VT+ D+D I K+  +G V V   S G     W   
Sbjct: 197 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 256

Query: 112 LDSPSGQVC 120
           L +P   + 
Sbjct: 257 LANPRRPIA 265

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 25  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAG 84

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTIKL 128
           + + + +YD+D   K  ++G   V + +   G     W  L S   +    +  I  
Sbjct: 85  KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICF 141

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELP 73
            ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL 
Sbjct: 47  GIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELG 106

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115
            + + + +YD+D   K  ++G   V + +   G     W  L S 
Sbjct: 107 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 65.9 bits (161), Expect = 4e-13
 Identities = 20/111 (18%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++   +L   + NG SDP+  +          K  + +   +  P + EEF + +   +
Sbjct: 42  GIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 101

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
           L    + ++++D+DI   +  +G   + + ++G+    WY  L +   ++ 
Sbjct: 102 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 152

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNF---SVDELP 73
           ++ A+ L   + +GTSDP+  I        K  + +   +  P W E F F     +++ 
Sbjct: 32  IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV 91

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            +I+ + + D+D   ++  +G V + +      Q    W  L    
Sbjct: 92  QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 64.2 bits (157), Expect = 7e-13
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++ A+NL   ++ GTSDPY  +         EK+ +     +  P++ E F F +  ++
Sbjct: 21  NIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK 80

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           L    II+T+ D D + ++ V+G + ++ +S       W   +  P   V 
Sbjct: 81  LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA 131

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F V  ++
Sbjct: 30  VILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ 89

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           +  VQ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 90  IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 64.3 bits (157), Expect = 9e-13
 Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 26  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 82

Query: 62  GEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +  + L  + +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 83  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 142

Query: 118 QVC 120
           Q+ 
Sbjct: 143 QIA 145

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           ++ AK L   + NG +DPY  +        S K  +  +  +R P+W E   +   + ++
Sbjct: 35  IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD 113
           +  + + +++ D D    +  +G    +++         + + 
Sbjct: 95  MQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNIC 137

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 12/105 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 24  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 83

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTL 112
              +++ +T++D   + +  S  LG +++ +E+        WY L
Sbjct: 84  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 128

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 27  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 86

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +++ +T++D   + +  S  LG +++ +E+        WY L +  
Sbjct: 87  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHD 135

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 62.0 bits (151), Expect = 6e-12
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGS 56
           ++   D Q      + L ++  K LI     GT DPY  I           + +  VP  
Sbjct: 18  LRLSIDAQDRV---LLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDC 73

Query: 57  RYPMWGEEFNFSV--DELPVQIIVTIYDWDIIWK-STVLGSVIV---TVESEGQTGAVWY 110
           R P + E F F V  ++   +++VT+++     + S ++G +     ++ +  +  + WY
Sbjct: 74  RDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWY 133

Query: 111 TLDSPSGQVCLHIKT 125
            L         H+K 
Sbjct: 134 YLLGEHLGRTKHLKV 148

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 61.5 bits (149), Expect = 6e-12
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 33  GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92
              + Y  +   + K  +  V GS  P W ++F F ++ L + + V +++  +IW  T++
Sbjct: 21  EKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIWD-TMV 78

Query: 93  GSVIVTVE----SEGQTGAVWYTLDSPS----GQVCLHIK 124
           G+V + +     S  +    W TLDS +     ++C    
Sbjct: 79  GTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKD 118

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DEL 72
             L A      N +G  D Y   +     GS +  +++     +  W E     +  +EL
Sbjct: 31  TRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
           P   + +T+   D   + +V G + + ++        A W  L +  
Sbjct: 88  PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT-----CGSEKRF-SSMVPGSRYPMWGEEFNFSV--DE 71
           ++   NL              +        +   F +  +  S   ++ E F  S+    
Sbjct: 49  IIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA 108

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS 114
           L  + + V +   D       LG   +    V   G+    WY L S
Sbjct: 109 LHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 20  LLAAKNLIGANL-NGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
           +     L  A+     S+PY             KR +S+   +  P++ E   + +    
Sbjct: 29  VKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESL 88

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
           L  + +  +++      ++T LG   + ++S    +       L    
Sbjct: 89  LAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 6   GDPQTNSAYLIKLELLAAKNLIGANLNGTSD---PYAIITCGSEKRFSSMVPGSRYPMWG 62
           G P  +      L LL    +  A  +G  +    Y  +   + +  +  V GS  P W 
Sbjct: 1   GSPGISGGGGGILSLLCVG-VKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWE 58

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV----ESEGQTGAVWYTLDSPSGQ 118
           ++F F ++ L + + V +++  +IW  T++G+V + +    +S  +    W TLDS +  
Sbjct: 59  QDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIM 117

Query: 119 VCLHIKTIKLP 129
               I   K P
Sbjct: 118 ADSEICGTKDP 128

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV---D 70
            ++  K+L+  +     +PY        T  + KR + +   +R P + E   +S    +
Sbjct: 25  MVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83

Query: 71  ELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            L  + + +++   + + ++  LG + + ++     +    WY L + +
Sbjct: 84  TLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT 132

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            + A +NLI  + +G SDPY  +        S +R + +   +  P++ + F+FSV   E
Sbjct: 29  VVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE 87

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPSG 117
           +  + + V + +          +LG V+V + SE   +    WY L   SG
Sbjct: 88  VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 18/116 (15%)

Query: 20  LLAAKNLIGAN-------LNGTSDPYA---IITCGSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ A++L               S+PY    ++      + + +   ++ P++ E + F +
Sbjct: 32  VIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEI 91

Query: 70  --DELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL---DSPSG 117
              E   + + +T+ D+D   +  V+G V V +      + G  W  L      SG
Sbjct: 92  PFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGPSSG 147

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANL-NGTSDPYAIIT-----CGSEKRFSSMVPG 55
           +Q   + +      +++E++ A++L        T  PY  +          K+ + +   
Sbjct: 21  IQIGMEDKKGQ---LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK 77

Query: 56  SRYPMWGEEFNFSVDELPVQIIVTIY-DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112
           +  P++ +   F        + V ++ D+  +     +G   + +E          WY L
Sbjct: 78  TLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

Query: 113 DSPSGQV 119
             PS  V
Sbjct: 138 FPPSSLV 144

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 20  LLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV---DEL 72
           +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F      ++
Sbjct: 28  IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87

Query: 73  PVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDSP 115
               +  TI  +D   +  ++G V++    +E       +   + S 
Sbjct: 88  QELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 55.3 bits (132), Expect = 1e-08
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 35  SDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS-VDELPVQ-IIVTIYDWDIIWKSTVL 92
           +D Y  +  G ++  + +V  +  P W ++ +F  V       + V ++D D  W   +L
Sbjct: 414 TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLL 473

Query: 93  GSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLP 129
           GS   +  S      V   L+   G+V        LP
Sbjct: 474 GSCDRSPHSGFHE--VTCELN--HGRVKFSYHAKCLP 506

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 52.3 bits (124), Expect = 2e-07
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 14  YLIKLELLAAKNLI---GANLNGTSDPYAII---TCGSEKRFSSMVPGSRYPMWGEEFNF 67
           +   + +L A  +      ++  T DPY  +   T    ++ +        P+W E F F
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 68  SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
            +D     ++ +T+ D +       LG+   TV S                   
Sbjct: 78  ILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEM 130

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 30  NLNGTSDPYAIITCGSEKRFSSMVPGSRYP-MWGEEFNFSVDELPVQ---IIVTIYDWDI 85
            L G +D  A +T   +  +S ++        + E F + V     +   + + I+++  
Sbjct: 32  ELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91

Query: 86  IWKSTVLGSVIV 97
           ++ + ++G+  +
Sbjct: 92  VFSNKLIGTFRM 103

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 43.8 bits (102), Expect = 6e-05
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 15/113 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF----SSMVPGSRYPMWGEEFNF---- 67
           +KL ++ A+ L           Y  +                       WGE F F    
Sbjct: 13  LKLWIIEARELPP-----KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQ 118
           +V  L + +           K+  +G V V V   +       WY +  P+G 
Sbjct: 68  AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 94/304 (30%)

Query: 25  NLIGANL---NGTSDPYAIITCGSEKRFSSMVPGS-----------RYPMWGEEFN-FSV 69
           ++I  ++     T D +  + C    + ++++  S            +    +  + F  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNC---DKLTTIIESSLNVLEPAEYRKMF----DRLSVFPP 383

Query: 70  D-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-------EGQTGAVWYTLDSPSGQVCL 121
              +P  ++       +IW   +   V+V V         E Q      ++  PS  + L
Sbjct: 384 SAHIPTILLS------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLEL 435

Query: 122 HIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV----------HQKPGPLQTIFNL 171
            +K          +++ Y   N  +    D   P  +          H K         L
Sbjct: 436 KVKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 172 LPDEFVELSYSCVIERSFLYHG----------------RMYVSAWHICFHSNAFSRQMKV 215
               F++  +   +E+   +                  + Y    +IC +   + R +  
Sbjct: 493 FRMVFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNA 547

Query: 216 IIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR 275
           I     +D + + +   I    T +LR+         L + D  + +          A +
Sbjct: 548 I-----LDFLPKIEENLICSKYTDLLRIA--------LMAEDEAI-F--------EEAHK 585

Query: 276 QLQR 279
           Q+QR
Sbjct: 586 QVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.87
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.87
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.85
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.84
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.84
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.83
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.83
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.82
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.82
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.81
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.78
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.78
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.77
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.77
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.77
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.77
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.77
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.77
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.77
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.77
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.76
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.76
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.75
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.75
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.75
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.74
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.74
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.74
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.74
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.74
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.73
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.73
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.72
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.72
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.72
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.68
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.67
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.64
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.64
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.58
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.54
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.53
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.52
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.5
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.4
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.38
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.13
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.13
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.08
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.03
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.97
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	96.54
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	95.16
1pfj_A	108	TFIIH basal transcription factor complex P62 subun	92.44
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	89.83
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	89.78
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	86.67
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	84.95
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	84.68
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	83.21
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	82.17

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.87  E-value=1.6e-21  Score=162.65  Aligned_cols=120  Identities=23%  Similarity=0.419  Sum_probs=108.5

Q ss_pred             CCCCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC
Q 018029            7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII   86 (362)
Q Consensus         7 ~~~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~   86 (362)
                      .......+.|.|+|++|++|+.++..|.+||||++.++.+.++|+++++++||.|+|+|.|.+.+....|.|+|||+|..
T Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~   85 (133)
T 2ep6_A            6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD   85 (133)
T ss_dssp             CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred             ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence            44556789999999999999999999999999999999999999999999999999999999987778899999999999


Q ss_pred             CCCceeEEEEEEeccCCCcceEEEEccC------CCCeeEEEEEEe
Q 018029           87 WKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (362)
Q Consensus        87 ~~ddfIG~~~i~L~~l~~~~~~w~~L~~------~~G~i~l~l~~~  126 (362)
                      +++++||++.+++.++..+..+|++|..      ..|++++.+++.
T Consensus        86 ~~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           86 KPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             EEEEECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             CCCCeeEEEEEEHHHccCCCceEEEeecCCCCCccceEEEEEEEEE
Confidence            8999999999999999767789999974      348888888765

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.87  E-value=6.8e-21  Score=161.62  Aligned_cols=117  Identities=29%  Similarity=0.495  Sum_probs=105.2

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC---
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII---   86 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~---   86 (362)
                      ....+.|.|+|++|++|+++|.+|.+||||++.++...++|+++.+++||.|+|+|.|.+......|.|+|||+|..   
T Consensus        13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~   92 (148)
T 3kwu_A           13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS   92 (148)
T ss_dssp             --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred             cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence            34469999999999999999999999999999999999999999999999999999999987778999999999985   


Q ss_pred             --------CCCceeEEEEEEeccCCCcceEEEEccC------CCCeeEEEEEEe
Q 018029           87 --------WKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (362)
Q Consensus        87 --------~~ddfIG~~~i~L~~l~~~~~~w~~L~~------~~G~i~l~l~~~  126 (362)
                              +++++||++.++|.++....+.|++|.+      ..|++++++.+.
T Consensus        93 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           93 RVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHTTTSSCSSEEEEEEEEEGGGCCSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccccccCCCCccEEEEEEEHHHCcCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                    7899999999999999878889999974      348888887764

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.85  E-value=6.8e-21  Score=163.85  Aligned_cols=114  Identities=15%  Similarity=0.212  Sum_probs=100.4

Q ss_pred             CceeEEEEEEEeeecCCCCCC----------CCCCCcEEEEEECCee-EeeccccCCCCCeeccEEEEEecCCCcEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~----------~g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~   79 (362)
                      ...|.|.|+|++|++|+++|.          .|.+||||++.++... .+|+++.+++||.|||+|.|.+.+ ...|.|+
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~  104 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA  104 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence            346899999999999999883          2679999999998765 599999999999999999999875 4689999


Q ss_pred             EEEcCCCCCCceeEEEEEEeccCC------CcceEEEEccCCCCeeEEEEEEe
Q 018029           80 IYDWDIIWKSTVLGSVIVTVESEG------QTGAVWYTLDSPSGQVCLHIKTI  126 (362)
Q Consensus        80 V~D~d~~~~ddfIG~~~i~L~~l~------~~~~~w~~L~~~~G~i~l~l~~~  126 (362)
                      |||+|..+++++||++.++|.++.      ...+.|++|.+ .|++++++++.
T Consensus       105 V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-~G~i~l~l~~~  156 (157)
T 2fk9_A          105 VFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-EGKVFVVITLT  156 (157)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-SCEEEEEEEEC
T ss_pred             EEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-CcEEEEEEEEE
Confidence            999999999999999999999872      45789999987 89999988763

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.84  E-value=3.3e-20  Score=155.03  Aligned_cols=120  Identities=22%  Similarity=0.371  Sum_probs=105.5

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeecccc-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK   88 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~-~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~   88 (362)
                      ....+.|.|+|++|++|+.++..|.+||||++.++...++|++++ +++||.|+|+|.|.+.+....|.|+|||++..++
T Consensus         6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~   85 (136)
T 1wfj_A            6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTE   85 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTT
T ss_pred             CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCC
Confidence            456899999999999999999999999999999998889999998 8999999999999998877889999999999999


Q ss_pred             CceeEEEEEEeccC---CCcceEEEEccC---CCCeeEEEEEEeecc
Q 018029           89 STVLGSVIVTVESE---GQTGAVWYTLDS---PSGQVCLHIKTIKLP  129 (362)
Q Consensus        89 ddfIG~~~i~L~~l---~~~~~~w~~L~~---~~G~i~l~l~~~~~~  129 (362)
                      +++||++.++|.++   +.....|++|..   ..|++++.+.+.+..
T Consensus        86 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           86 DDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             TCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             CceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCC
Confidence            99999999999987   334578999962   237777777776543

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=8.8e-20  Score=153.15  Aligned_cols=119  Identities=18%  Similarity=0.331  Sum_probs=102.6

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecC----CCcEEEEEEEEcCC
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI   85 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~----~~~~L~~~V~D~d~   85 (362)
                      +...+.|.|+|++|++|+.++. |.+||||++.++.++++|+++++++||.|||+|.|.+..    ....|.|+|||+|.
T Consensus         3 s~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            3 SGSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET   81 (140)
T ss_dssp             SCBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred             CCCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence            3567899999999999999998 999999999999889999999999999999999999964    35789999999999


Q ss_pred             CCCCceeEEEEEEeccC--CCcceEEEE---ccCC-----CCeeEEEEEEeecc
Q 018029           86 IWKSTVLGSVIVTVESE--GQTGAVWYT---LDSP-----SGQVCLHIKTIKLP  129 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l--~~~~~~w~~---L~~~-----~G~i~l~l~~~~~~  129 (362)
                      .+++++||++.++|.++  +...+.|+.   |...     .|++++.+.+.+..
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~  135 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPS  135 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCB
T ss_pred             CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCC
Confidence            99999999999999998  445678988   5432     26777777776543

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.83  E-value=3.2e-20  Score=155.51  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=100.0

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCC-----------CCcEEEEEECCee-EeeccccCCCCCeeccEEEEEecCCCcEEEEE
Q 018029           12 SAYLIKLELLAAKNLIGANLNGT-----------SDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~-----------sDPyv~i~l~~~~-~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~   79 (362)
                      ..+.|.|+|++|++|+++|..++           +||||++.++... .+|+++.+++||.|||+|.|.+.+. ..|.|+
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~   82 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEE
Confidence            46899999999999999886554           9999999998765 5999999999999999999999764 889999


Q ss_pred             EEEcCCCCCCceeEEEEEEeccCCC----cceEEEEccCCCCeeEEEEEEee
Q 018029           80 IYDWDIIWKSTVLGSVIVTVESEGQ----TGAVWYTLDSPSGQVCLHIKTIK  127 (362)
Q Consensus        80 V~D~d~~~~ddfIG~~~i~L~~l~~----~~~~w~~L~~~~G~i~l~l~~~~  127 (362)
                      |||+|..+++++||++.+++.++..    ..+.|++|.+ .|++++.+++..
T Consensus        83 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~i~l~l~~~~  133 (136)
T 1gmi_A           83 VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSG  133 (136)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             EEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC-CeEEEEEEEEEe
Confidence            9999999999999999999998732    2378999987 799999988764

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.83  E-value=1e-19  Score=155.24  Aligned_cols=117  Identities=20%  Similarity=0.333  Sum_probs=95.0

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC------eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEc
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW   83 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~------~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~   83 (362)
                      ....+.|.|+|++|++|+.+|..|.+||||++.+..      ..++|+++++++||.|||+|.|.+......|.|+|||+
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~   95 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDE   95 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEEC
Confidence            456799999999999999999999999999999862      56799999999999999999999987778899999999


Q ss_pred             CCCCCCceeEEEEEEeccCCCc--c------eEEEEccCC------CCeeEEEEEEe
Q 018029           84 DIIWKSTVLGSVIVTVESEGQT--G------AVWYTLDSP------SGQVCLHIKTI  126 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~~~--~------~~w~~L~~~------~G~i~l~l~~~  126 (362)
                      |..+++++||++.++|.++...  .      ..|++|.++      .|+|++.+.+.
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~  152 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL  152 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence            9999999999999999998322  1      489999652      38888887764

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.82  E-value=2.5e-19  Score=156.68  Aligned_cols=120  Identities=20%  Similarity=0.312  Sum_probs=96.8

Q ss_pred             CCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC------eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEE
Q 018029            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD   82 (362)
Q Consensus         9 ~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~------~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D   82 (362)
                      .....+.|.|+|++|++|+.++..|.+||||++.+..      ..++|+++++++||.|+|.|.|.+......|.|+|||
T Consensus         3 ~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d   82 (176)
T 3m7f_B            3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFD   82 (176)
T ss_dssp             CCTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEE
Confidence            3456799999999999999999999999999999863      5679999999999999999999998767889999999


Q ss_pred             cCCCCCCceeEEEEEEeccCCCc-ce-------EEEEccC------CCCeeEEEEEEeec
Q 018029           83 WDIIWKSTVLGSVIVTVESEGQT-GA-------VWYTLDS------PSGQVCLHIKTIKL  128 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~~~-~~-------~w~~L~~------~~G~i~l~l~~~~~  128 (362)
                      +|..+++++||++.++|.++... ..       .||.|.+      ..|+|++.+.+.+.
T Consensus        83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            99999999999999999998322 12       7999975      24888888888765

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=1.9e-19  Score=148.34  Aligned_cols=114  Identities=20%  Similarity=0.357  Sum_probs=96.9

Q ss_pred             ceeEEEEEEEeeecCCCC---CCCCCCCcEEEEEECC---eeEeeccccCCCCCeeccEEEEEec-CCCcEEEEEEEEcC
Q 018029           12 SAYLIKLELLAAKNLIGA---NLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWD   84 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~---d~~g~sDPyv~i~l~~---~~~rT~~i~~t~nP~W~e~f~f~v~-~~~~~L~~~V~D~d   84 (362)
                      +.+.|.|+|++|++|+.+   +..|.+||||++.++.   ..++|+++++++||.|||+|.|.+. .....|.|+|||+|
T Consensus         1 S~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d   80 (126)
T 1rlw_A            1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CCcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECC
Confidence            358899999999999984   6679999999999974   7889999999999999999999995 44678999999999


Q ss_pred             CCCCCceeEEEEEEeccC--CCcceEEEEccCCCCeeEEEEEEee
Q 018029           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTIK  127 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~~G~i~l~l~~~~  127 (362)
                      .. ++++||++.++|.++  +.....|++|.+ .|++.+++.+..
T Consensus        81 ~~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~-~~~g~i~~~le~  123 (126)
T 1rlw_A           81 YV-MDETLGTATFTVSSMKVGEKKEVPFIFNQ-VTEMVLEMSLEV  123 (126)
T ss_dssp             SS-CCEEEEEEEEEGGGSCTTCEEEEEEEETT-TEEEEEEEEEEC
T ss_pred             CC-CCceeEEEEEEHHHccCCCcEEEEEEcCC-CceEEEEEEEEe
Confidence            87 489999999999998  455678999986 455555555543

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.81  E-value=4.2e-19  Score=147.67  Aligned_cols=112  Identities=23%  Similarity=0.375  Sum_probs=96.0

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC--eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC-
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK-   88 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~--~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~-   88 (362)
                      ....|.|+|++|++|+++|..|.+||||++.++.  ..++|+++.+++||.|+|+|.|.+... ..|.|+|||+|..++ 
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHKK   81 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTSS
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCCC
Confidence            3578999999999999999999999999999964  778999999999999999999999764 359999999998876 


Q ss_pred             --CceeEEEEEEeccC---CCcceEEEEccCC--------CCeeEEEEE
Q 018029           89 --STVLGSVIVTVESE---GQTGAVWYTLDSP--------SGQVCLHIK  124 (362)
Q Consensus        89 --ddfIG~~~i~L~~l---~~~~~~w~~L~~~--------~G~i~l~l~  124 (362)
                        +++||++.+++..+   ......|++|..+        .|+|++++.
T Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~  130 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ  130 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred             CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence              79999999998876   4555789999753        467766664

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.78  E-value=1.8e-18  Score=144.66  Aligned_cols=103  Identities=15%  Similarity=0.310  Sum_probs=90.8

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~D   82 (362)
                      ..+.|.|+|++|++|+. +.+|.+||||++.+     ....++|+++++++||.|||+|.|. +..   ....|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            35889999999999997 77899999999998     3567899999999999999999999 752   35789999999


Q ss_pred             cCCCCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~  115 (362)
                      +|..+++++||++.++|.++  +.....|++|.+.
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~  131 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA  131 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence            99999999999999999998  4567899999863

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.78  E-value=4.8e-18  Score=159.05  Aligned_cols=166  Identities=17%  Similarity=0.285  Sum_probs=124.6

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d   84 (362)
                      ...+.|.|+|++|++|+.+|..|.+||||++.+.   ....+|+++.+++||.|||+|.|.+..   ....|.|+|||+|
T Consensus        16 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            3568999999999999999999999999999984   457799999999999999999999863   2478999999999


Q ss_pred             CCCCCceeEEEEEEeccC--CCcceEEEEccCC-------CCeeEEEEEEeeccccccccccccccchhhhccccccCCC
Q 018029           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGP  155 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~-------~G~i~l~l~~~~~~~~~~~~~~~~~~~~~r~r~~~~kl~~  155 (362)
                      ..+++++||++.++|.++  +...+.|++|.+.       .|++++.+.+.+....        .   .-..+++.++.+
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~~--------l---~v~v~~a~~L~~  164 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGK--------L---TVVILEAKNLKK  164 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTTE--------E---EEEEEEEESCCC
T ss_pred             CCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCCc--------e---EEEEEEeECCCC
Confidence            999999999999999998  4556899999642       3777776665432110        0   001112345555


Q ss_pred             ceeeccccccceeeccCC--------Ccceeeeehhhhhh
Q 018029          156 TVVHQKPGPLQTIFNLLP--------DEFVELSYSCVIER  187 (362)
Q Consensus       156 k~~~~k~~~f~~~F~lp~--------~E~l~~~~~c~l~~  187 (362)
                      .+...+++||-++.-.+.        .++..++.++.|..
T Consensus       165 ~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne  204 (284)
T 2r83_A          165 MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE  204 (284)
T ss_dssp             CSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEE
T ss_pred             cCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEce
Confidence            555667888888774432        24455566777765

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.77  E-value=8.8e-19  Score=150.42  Aligned_cols=103  Identities=15%  Similarity=0.121  Sum_probs=91.4

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC------eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~------~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D   82 (362)
                      ..+.|.|+|++|++|+++|.+|.+||||++++..      .+++|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d  120 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT  120 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence            4578999999999999999999999999999953      268999999999999999999998632   4679999999


Q ss_pred             cCCCCCCceeEEEEEEeccC---CCcceEEEEccC
Q 018029           83 WDIIWKSTVLGSVIVTVESE---GQTGAVWYTLDS  114 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l---~~~~~~w~~L~~  114 (362)
                      +|..+++++||++.++|.++   .....+||.|.+
T Consensus       121 ~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          121 TDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             ECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             CCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            99999999999999999997   356789999863

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.77  E-value=1.3e-18  Score=146.69  Aligned_cols=103  Identities=23%  Similarity=0.427  Sum_probs=92.7

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE---CCeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCC
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l---~~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~   85 (362)
                      ..+.|.|+|++|++|+.++..+.+||||++.+   +...++|+++++++||.|+|+|.|.+..   ....|.|+|||+|.
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  111 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence            46789999999999999999999999999999   4567899999999999999999999863   24789999999999


Q ss_pred             CCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      .+++++||++.++|.++  +...+.|++|.+
T Consensus       112 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            99999999999999998  456789999975

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.77  E-value=3e-18  Score=149.78  Aligned_cols=116  Identities=12%  Similarity=0.221  Sum_probs=96.1

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddf   91 (362)
                      ..+.|.|+|++|++|+..+..+.+||||++.++...++|+++++++||.|||+|.|.+.+ ...|.|+|||+|..+++++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~  112 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVL  112 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCce
Confidence            368899999999999944445569999999999988999999999999999999999864 7889999999999999999


Q ss_pred             eEEEEEEeccCC---C----cceEEEEccCC------CCeeEEEEEEeec
Q 018029           92 LGSVIVTVESEG---Q----TGAVWYTLDSP------SGQVCLHIKTIKL  128 (362)
Q Consensus        92 IG~~~i~L~~l~---~----~~~~w~~L~~~------~G~i~l~l~~~~~  128 (362)
                      ||++.++|.++.   .    ....|+.|..+      .|++++.+.+...
T Consensus       113 lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          113 LGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             EEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            999999999861   1    12679999753      3666666665544

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=2.7e-18  Score=146.46  Aligned_cols=103  Identities=23%  Similarity=0.427  Sum_probs=92.5

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE---CCeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCC
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l---~~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~   85 (362)
                      ..+.|.|+|++|++|+.+|..|.+||||++.+   +...++|+++++++||.|||+|.|.+..   ....|.|+|||+|.
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  119 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  119 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence            45789999999999999999999999999999   4567899999999999999999998863   25789999999999


Q ss_pred             CCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      .+++++||++.++|.++  +...++|++|.+
T Consensus       120 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          120 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            98999999999999998  456789999975

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=2.2e-18  Score=142.45  Aligned_cols=103  Identities=22%  Similarity=0.406  Sum_probs=86.1

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEe-cC---CCcEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIY   81 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v-~~---~~~~L~~~V~   81 (362)
                      ...+.|.|+|++|++|+.++..|.+||||++.+     +...++|+++++++||.|||+|.|.+ ..   ....|.|+||
T Consensus        15 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~   94 (129)
T 2bwq_A           15 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   94 (129)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence            345889999999999999999999999999998     35678999999999999999999995 31   2468999999


Q ss_pred             EcCCCCC--CceeEEEEEEeccC-CCcceEEEEcc
Q 018029           82 DWDIIWK--STVLGSVIVTVESE-GQTGAVWYTLD  113 (362)
Q Consensus        82 D~d~~~~--ddfIG~~~i~L~~l-~~~~~~w~~L~  113 (362)
                      |+|..++  +++||++.++|.++ ....++||+|+
T Consensus        95 d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~Lq  129 (129)
T 2bwq_A           95 DQARVREEESEFLGEILIELETALLDDEPHWYKLQ  129 (129)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             ECCcCcCcCCceeEEEEEEccccCCCcCCccEECc
Confidence            9999887  99999999999997 44478999984

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=148.05  Aligned_cols=105  Identities=15%  Similarity=0.214  Sum_probs=92.1

Q ss_pred             ceeEEEEEEEeeecCCCCC-CCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029           12 SAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D   82 (362)
                      ..+.|.|+|++|++|+.++ ..|.+||||++.+.     ..+++|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d  100 (148)
T 3fdw_A           21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWH  100 (148)
T ss_dssp             TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEE
Confidence            4588999999999999988 68999999999985     3477999999999999999999998743   4569999999


Q ss_pred             cCCCCCCceeEEEEEEeccC--CCcceEEEEccCCC
Q 018029           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~~  116 (362)
                      +|..+++++||++.++|.++  +.....|++|.++.
T Consensus       101 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A          101 HGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             ECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             CCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            99999999999999999997  45678999998754

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=3.9e-18  Score=143.43  Aligned_cols=104  Identities=20%  Similarity=0.363  Sum_probs=91.9

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecC----CCcEEEEEEEEcC
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWD   84 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~----~~~~L~~~V~D~d   84 (362)
                      ..+.|.|+|++|++|+.++..|.+||||++.+.   ...++|+++++++||.|||+|.|.+..    ....|.|+|||+|
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  103 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD  103 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence            468899999999999999999999999999993   467899999999999999999998532    2578999999999


Q ss_pred             CCCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~  115 (362)
                      ..+++++||++.++|.++  +...+.|++|.+.
T Consensus       104 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A          104 RFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             SSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             CCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            999999999999999998  4457899999863

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.76  E-value=3.5e-18  Score=145.16  Aligned_cols=102  Identities=27%  Similarity=0.471  Sum_probs=91.7

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC--CcEEEEEEEEcCC
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDI   85 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~--~~~L~~~V~D~d~   85 (362)
                      .+.|.|+|++|++|+.++..+.+||||++.+.     ...++|+++++++||.|+|+|.|.+...  ...|.|+|||+|.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            46799999999999999999999999999995     4678999999999999999999998743  4689999999999


Q ss_pred             CCCCceeEEEEEEeccC-CCcceEEEEccC
Q 018029           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l-~~~~~~w~~L~~  114 (362)
                      .+++++||++.++|.++ ....+.||+|.+
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~~~~~W~~L~~  139 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  139 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCCEEEEEEEEHHHhCcCccCCeEEccC
Confidence            99999999999999997 445789999976

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.76  E-value=1.1e-18  Score=146.72  Aligned_cols=105  Identities=25%  Similarity=0.440  Sum_probs=91.8

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCe--------------eEeeccccCCCCCeeccEEEEE-ecC---CCc
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE--------------KRFSSMVPGSRYPMWGEEFNFS-VDE---LPV   74 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~--------------~~rT~~i~~t~nP~W~e~f~f~-v~~---~~~   74 (362)
                      .+.|.|+|++|++|+.+|..|.+||||++.+...              .++|+++++++||.|||+|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            4689999999999999999999999999999642              4689999999999999999997 542   357


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEeccC--CCcceEEEEccCCCC
Q 018029           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSG  117 (362)
Q Consensus        75 ~L~~~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~~G  117 (362)
                      .|.|+|||+|..+++++||++.++|.++  ......||+|.+.++
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  141 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE  141 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCCC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccCC
Confidence            8999999999999999999999999987  356789999987543

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.75  E-value=4e-18  Score=142.91  Aligned_cols=103  Identities=22%  Similarity=0.408  Sum_probs=90.8

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEe-cC---CCcEEEEEEEE
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYD   82 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v-~~---~~~~L~~~V~D   82 (362)
                      ..+.|.|+|++|++|+.++..|.+||||++.+     +...++|+++++++||.|||+|.|.+ ..   ....|.|+|||
T Consensus        19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d   98 (141)
T 1v27_A           19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   98 (141)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence            45789999999999999999999999999998     35677999999999999999999994 32   24789999999


Q ss_pred             cCCCCC--CceeEEEEEEeccC-CCcceEEEEccC
Q 018029           83 WDIIWK--STVLGSVIVTVESE-GQTGAVWYTLDS  114 (362)
Q Consensus        83 ~d~~~~--ddfIG~~~i~L~~l-~~~~~~w~~L~~  114 (362)
                      +|..++  +++||++.++|.++ .....+||+|.+
T Consensus        99 ~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L~~  133 (141)
T 1v27_A           99 QARVREEESEFLGEILIELETALLDDEPHWYKLQT  133 (141)
T ss_dssp             BCSSSSCCBCCCEEEEEEGGGCCCSSEEEEEECBC
T ss_pred             CCCCcCCCCceEEEEEEEccccCCCCCCceEECcc
Confidence            999887  99999999999997 445789999986

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.75  E-value=5e-18  Score=147.85  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=91.1

Q ss_pred             eeEEEEEEEeeecCCCCCC-CCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEE-EcCC
Q 018029           13 AYLIKLELLAAKNLIGANL-NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI   85 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~-~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~-D~d~   85 (362)
                      .+.|.|+|++|++|+.+|. .|.+||||++.+..     ..++|+++++++||.|||+|.|.+......|.|+|| |+|.
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~  108 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGR  108 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECST
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCC
Confidence            5789999999999999995 79999999999842     367999999999999999999998766788999999 9999


Q ss_pred             CCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~  115 (362)
                      .+++++||++.++|.++  +.....|++|.+.
T Consensus       109 ~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          109 MDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             TCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            99999999999999998  5667899999874

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.75  E-value=9.4e-18  Score=143.26  Aligned_cols=103  Identities=26%  Similarity=0.426  Sum_probs=90.7

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEec--CCCcEEEEEEEEcC
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWD   84 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v~--~~~~~L~~~V~D~d   84 (362)
                      ..+.|.|+|++|++|+.++ .|.+||||++.+     .....+|+++++++||.|||+|.|.+.  +....|.|+|||+|
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  103 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA  103 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC
Confidence            4688999999999999999 699999999998     345689999999999999999999984  44567999999999


Q ss_pred             CCCC-CceeEEEEEEeccCC---CcceEEEEccCC
Q 018029           85 IIWK-STVLGSVIVTVESEG---QTGAVWYTLDSP  115 (362)
Q Consensus        85 ~~~~-ddfIG~~~i~L~~l~---~~~~~w~~L~~~  115 (362)
                      ..++ +++||++.++|.++.   .....|++|.++
T Consensus       104 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          104 SQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             SSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             CCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            9876 899999999999973   567899999863

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=1.4e-17  Score=139.83  Aligned_cols=101  Identities=16%  Similarity=0.220  Sum_probs=88.2

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC---C-eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S-EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~---~-~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~d   84 (362)
                      ..+.|.|+|++|+   ++|.+|.+||||++.+.   . ..++|+++++++||.|||+|.|.+...   ...|.|+|||+|
T Consensus        24 ~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d  100 (138)
T 1wfm_A           24 QKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECC
Confidence            4578999999999   46789999999999983   2 356999999999999999999998742   467999999999


Q ss_pred             CCCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~  115 (362)
                      ..+++++||++.++|.++  ......|++|.+.
T Consensus       101 ~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~  133 (138)
T 1wfm_A          101 RFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             CCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence            999999999999999998  5677899999863

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=1.3e-17  Score=139.58  Aligned_cols=104  Identities=18%  Similarity=0.235  Sum_probs=89.5

Q ss_pred             ceeEEEEEEEeeecCCCCCCC-CCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEE-ecC---CCcEEEEEEEEc
Q 018029           12 SAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYDW   83 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~-g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~D~   83 (362)
                      ..+.|.|+|++|++|+.+|.. |.+||||++.+.   ...++|+++++++||.|||+|.|. +..   ....|.|+|||+
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence            457899999999999999985 899999999984   468899999999999999999996 653   246899999999


Q ss_pred             CCCCCCceeEEEEEEeccCC---CcceEEEEccCC
Q 018029           84 DIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP  115 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~---~~~~~w~~L~~~  115 (362)
                      |..+++++||++.++|.++.   +....|++|.++
T Consensus       100 d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A          100 DRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             CCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            99999999999999999983   334567888763

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.74  E-value=1e-17  Score=140.93  Aligned_cols=103  Identities=18%  Similarity=0.317  Sum_probs=90.0

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEE-ecCC---CcEEEEEEEE
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFS-VDEL---PVQIIVTIYD   82 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~-v~~~---~~~L~~~V~D   82 (362)
                      ..+.|.|+|++|++|+.++..|.+||||++.+..     ..++|+++++++||.|+|+|.|. +...   ...|.|+|||
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  106 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD  106 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence            4678999999999999999999999999999953     67899999999999999999998 5421   3689999999


Q ss_pred             cCCCCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      +|..+++++||++.++|.++  +.....|+.|..
T Consensus       107 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          107 EDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             ECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             CCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            99999999999999999998  455567777764

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.74  E-value=2.1e-18  Score=143.96  Aligned_cols=108  Identities=26%  Similarity=0.391  Sum_probs=92.9

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D   82 (362)
                      ...+.|.|+|++|++|+.++..|.+||||++.+..     ...+|+++.+++||.|||+|.|.+...   ...|.|+|||
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            45689999999999999999999999999999852     467999999999999999999998643   2579999999


Q ss_pred             cCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      +|..+++++||++.+++.++....++|+.|....|+
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~  128 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQ  128 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTC
T ss_pred             CCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCCC
Confidence            999999999999999999876666777777654444

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.74  E-value=3.2e-18  Score=148.12  Aligned_cols=107  Identities=17%  Similarity=0.325  Sum_probs=93.1

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~   83 (362)
                      ..+.|.|+|++|++|+.+|.+|.+||||++.+..     ..++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  114 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY  114 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence            4578999999999999999999999999999964     577999999999999999999998642   45899999999


Q ss_pred             CCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      |..+++++||++.+++.+++....+|+.|....++
T Consensus       115 d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~  149 (166)
T 2cm5_A          115 DIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDK  149 (166)
T ss_dssp             CSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTC
T ss_pred             CCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCC
Confidence            99999999999999999876666778877654444

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=7.4e-18  Score=141.77  Aligned_cols=105  Identities=27%  Similarity=0.400  Sum_probs=89.9

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEc
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~   83 (362)
                      ..+.|.|+|++|++|+.++..| +||||++.+.     ...++|+++++++||.|||+|.|.+..   ....|.|+|||+
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  100 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNS  100 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEEC
Confidence            3578999999999999999999 9999999983     257799999999999999999999863   235899999999


Q ss_pred             CCCCC--CceeEEEEEEeccC--CCcceEEEEccCCCC
Q 018029           84 DIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPSG  117 (362)
Q Consensus        84 d~~~~--ddfIG~~~i~L~~l--~~~~~~w~~L~~~~G  117 (362)
                      |..+.  +++||++.++|.++  .....+|+.|.++++
T Consensus       101 d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~  138 (142)
T 2dmg_A          101 GGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG  138 (142)
T ss_dssp             CCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred             CCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence            98763  57999999999987  446788999987543

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.73  E-value=3e-17  Score=155.02  Aligned_cols=166  Identities=15%  Similarity=0.208  Sum_probs=121.8

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE---CCeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l---~~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~d   84 (362)
                      ...+.|.|+|++|++|+.+|.+|.+||||++.+   +...++|+++++++||.|+|+|.|.+...   ...|.|+|||+|
T Consensus        17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            356899999999999999999999999999999   56788999999999999999999998632   357999999999


Q ss_pred             CCCCCceeEEEEEE-eccC---CCcceEEEEccCC------CCeeEEEEEEeeccccccccccccccchhhhccccccCC
Q 018029           85 IIWKSTVLGSVIVT-VESE---GQTGAVWYTLDSP------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQG  154 (362)
Q Consensus        85 ~~~~ddfIG~~~i~-L~~l---~~~~~~w~~L~~~------~G~i~l~l~~~~~~~~~~~~~~~~~~~~~r~r~~~~kl~  154 (362)
                      ..+++++||++.++ +.++   ......|+.|...      .|++.+.+.+.+..  . .     ..   -.-+++..+.
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~--~-~-----l~---v~v~~a~~L~  165 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTA--G-L-----LT---VTIIKASNLK  165 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTT--T-E-----EE---EEEEEEESCC
T ss_pred             CCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecccc--c-e-----eE---EEEEEeecCC
Confidence            99999999999995 3333   4456789999642      37777766654321  0 0     00   0112234455


Q ss_pred             CceeeccccccceeeccCCC--------cceeeeehhhhhh
Q 018029          155 PTVVHQKPGPLQTIFNLLPD--------EFVELSYSCVIER  187 (362)
Q Consensus       155 ~k~~~~k~~~f~~~F~lp~~--------E~l~~~~~c~l~~  187 (362)
                      +.+...+++||-++.-.+.+        .+..++.++.|..
T Consensus       166 ~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne  206 (296)
T 1dqv_A          166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNE  206 (296)
T ss_dssp             CCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEE
T ss_pred             ccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECc
Confidence            55666778898887754322        3455556666665

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.72  E-value=3.8e-17  Score=140.23  Aligned_cols=92  Identities=34%  Similarity=0.504  Sum_probs=81.9

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~   83 (362)
                      ..+.|.|+|++|++|+.+|.+|.+||||++.+..     ...+|+++.+++||.|||+|.|.+...   ...|.|+|||+
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  102 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence            4679999999999999999999999999999842     466999999999999999999998642   45799999999


Q ss_pred             CCCCCCceeEEEEEEeccCC
Q 018029           84 DIIWKSTVLGSVIVTVESEG  103 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~  103 (362)
                      |..+++++||++.+++..++
T Consensus       103 d~~~~~~~iG~~~i~l~~~~  122 (159)
T 1tjx_A          103 DKIGKNDAIGKVFVGYNSTG  122 (159)
T ss_dssp             CSSSCCEEEEEEEEETTCCH
T ss_pred             CCCCCCceEEEEEECCCCCC
Confidence            99999999999999998653

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.72  E-value=7.5e-18  Score=143.61  Aligned_cols=106  Identities=18%  Similarity=0.346  Sum_probs=85.4

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCe---eEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSE---KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~---~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~   83 (362)
                      ..+.|.|+|++|++|+.++..|.+||||++.+  +..   +++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~  107 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS  107 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence            45789999999999999999999999999998  433   56999999999999999999998753   36799999999


Q ss_pred             CCCCCCceeEEEEEEeccCCCcceEEEEccCCCC
Q 018029           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G  117 (362)
                      |..+++++||++.+++........+|+.|....+
T Consensus       108 d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~p~  141 (153)
T 1w15_A          108 ERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPR  141 (153)
T ss_dssp             CTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTT
T ss_pred             CCCCCCcEEEEEEECCCCCchHHHHHHHHHhCCC
Confidence            9999999999999999986666677777764333

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=141.19  Aligned_cols=104  Identities=18%  Similarity=0.321  Sum_probs=88.8

Q ss_pred             ceeEEEEEEEeeecCCCC-CC------CCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEE
Q 018029           12 SAYLIKLELLAAKNLIGA-NL------NGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIV   78 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~-d~------~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~   78 (362)
                      ..+.|.|+|++|++|+.+ +.      .|.+||||++.+.   ...++|+++++++||.|||+|.|.+..   ....|.|
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~  103 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLL  103 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEE
Confidence            457899999999999984 43      3589999999985   457799999999999999999999863   2358999


Q ss_pred             EEEEcCCCCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029           79 TIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (362)
Q Consensus        79 ~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~  115 (362)
                      +|||+|..+++++||++.++|.++  ......|+.|.++
T Consensus       104 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A          104 TVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             EEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            999999999999999999999998  3445789999864

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.68  E-value=4e-16  Score=158.38  Aligned_cols=111  Identities=21%  Similarity=0.302  Sum_probs=97.8

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEec--CCCcEEEEEEEEcCCCCCCc
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIWKST   90 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~--~~~~~L~~~V~D~d~~~~dd   90 (362)
                      .+.|.|+|++|++|+. |.+|++||||+|.++++..+|+++++++||.|||+|.|.+.  +..+.|+|+|||+|..++||
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD  471 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDD  471 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCE
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            6899999999999998 99999999999999988899999999999999999999864  35778999999999999999


Q ss_pred             eeEEEEEEeccCCCcceEEEEccCCCCeeEEEEEEeec
Q 018029           91 VLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKL  128 (362)
Q Consensus        91 fIG~~~i~L~~l~~~~~~w~~L~~~~G~i~l~l~~~~~  128 (362)
                      +||++.++|..  +..+.|+.|.  +|.+++.+++.-.
T Consensus       472 ~LG~~~~~L~~--g~~~~~~~l~--~G~l~~~~~~~c~  505 (540)
T 3nsj_A          472 LLGSCDRSPHS--GFHEVTCELN--HGRVKFSYHAKCL  505 (540)
T ss_dssp             EEEEEEECCCS--EEEEEEEECS--SSEEEEEEEEEEC
T ss_pred             EEEEEEEEeeC--CcEEEEEEcC--CeEEEEEEEEEEC
Confidence            99999999883  3456788875  6888888775544

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.67  E-value=3.6e-16  Score=157.99  Aligned_cols=115  Identities=21%  Similarity=0.351  Sum_probs=102.0

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~~~~dd   90 (362)
                      ..+.|.|+|++|++|+++|.+|.+||||++.++....+|+++.+++||.|+|+|.|.+... ...|.|+|||+|..++++
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d  464 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD  464 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence            4589999999999999999999999999999999999999999999999999999999754 467999999999999999


Q ss_pred             eeEEEEEEeccCCC------cceEEEEccC-CCCeeEEEEEEe
Q 018029           91 VLGSVIVTVESEGQ------TGAVWYTLDS-PSGQVCLHIKTI  126 (362)
Q Consensus        91 fIG~~~i~L~~l~~------~~~~w~~L~~-~~G~i~l~l~~~  126 (362)
                      +||++.+++.++..      ....|+.|.+ ..|++++.+.+.
T Consensus       465 ~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          465 FLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             EEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             ceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            99999999998721      2678999975 569988887754

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.64  E-value=1.2e-15  Score=127.08  Aligned_cols=86  Identities=16%  Similarity=0.314  Sum_probs=73.9

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeecccc-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCC
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKS   89 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~-~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~d   89 (362)
                      .+.+.|.|+|++|++|..   .|.+||||++.  .+..+|+++. +++||.|||+|.|.+.+....|.|+|||+| .++|
T Consensus         2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~d   75 (131)
T 2cjt_A            2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWD   75 (131)
T ss_dssp             CCCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCE
T ss_pred             CcceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCC
Confidence            356899999999998852   68899999999  3344555554 799999999999999876778999999999 8899


Q ss_pred             ceeEEEEEEeccC
Q 018029           90 TVLGSVIVTVESE  102 (362)
Q Consensus        90 dfIG~~~i~L~~l  102 (362)
                      ++||++.++|.++
T Consensus        76 d~iG~~~i~l~~l   88 (131)
T 2cjt_A           76 TMVGTVWIPLRTI   88 (131)
T ss_dssp             EEEEEEEEEGGGS
T ss_pred             CeEEEEEEEHHHh
Confidence            9999999999997

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.64  E-value=1.2e-15  Score=132.46  Aligned_cols=87  Identities=16%  Similarity=0.292  Sum_probs=75.1

Q ss_pred             CCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeecccc-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC
Q 018029           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK   88 (362)
Q Consensus        10 ~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~-~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~   88 (362)
                      ++..+.|.|+|++|++|.   ..|.+||||++.  .+..+|+++. +++||.|||+|.|.+.+....|.|+|||+| .++
T Consensus        10 ~g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~   83 (167)
T 2cjs_A           10 GGILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIW   83 (167)
T ss_dssp             CSCCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSC
T ss_pred             CCceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCC
Confidence            345789999999999884   378899999999  3345666665 699999999999999877778999999999 889


Q ss_pred             CceeEEEEEEeccC
Q 018029           89 STVLGSVIVTVESE  102 (362)
Q Consensus        89 ddfIG~~~i~L~~l  102 (362)
                      |++||++.++|.++
T Consensus        84 dd~iG~~~i~L~~l   97 (167)
T 2cjs_A           84 DTMVGTVWIPLRTI   97 (167)
T ss_dssp             CEEEEEEEEEGGGS
T ss_pred             CceEEEEEEEHHHh
Confidence            99999999999997

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.58  E-value=1.4e-14  Score=135.44  Aligned_cols=91  Identities=33%  Similarity=0.486  Sum_probs=80.8

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~   83 (362)
                      ..+.|.|.|++|++|+.+|.+|.+||||++.+.  .   .+++|+++++++||.|||.|.|.+...   ...|.|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            356899999999999999999999999999983  2   456999999999999999999998743   34699999999


Q ss_pred             CCCCCCceeEEEEEEeccC
Q 018029           84 DIIWKSTVLGSVIVTVESE  102 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l  102 (362)
                      |..+++++||++.+++..+
T Consensus       228 d~~~~~~~iG~~~i~l~~~  246 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNST  246 (284)
T ss_dssp             CSSSCCCEEEEEEEETTCC
T ss_pred             CCCCCCcEEEEEEECCCCC
Confidence            9999999999999999874

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.54  E-value=8.8e-14  Score=143.86  Aligned_cols=106  Identities=21%  Similarity=0.302  Sum_probs=92.8

Q ss_pred             ceeEEEEEEEeeecCCCCCC--CCCCCcEEEEEEC-----CeeEeeccccCC-CCCeeccEEEEEecCC-CcEEEEEEEE
Q 018029           12 SAYLIKLELLAAKNLIGANL--NGTSDPYAIITCG-----SEKRFSSMVPGS-RYPMWGEEFNFSVDEL-PVQIIVTIYD   82 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~--~g~sDPyv~i~l~-----~~~~rT~~i~~t-~nP~W~e~f~f~v~~~-~~~L~~~V~D   82 (362)
                      ..+.|.|+|++|++|+.++.  .|.+||||++.+.     ..+.+|++++++ +||.|||+|.|.+..+ ...|+|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            56899999999999999884  7899999999983     367899999987 9999999999998753 4679999999


Q ss_pred             cCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      +|..+++++||++.++|..+..+ .+|++|....|+
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G-~r~v~L~d~~g~  609 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGD  609 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCE-EEEEEEECTTSC
T ss_pred             cCCCCCCceeEEEEEEHHHcCCC-cEEEeCCCCCcC
Confidence            99999999999999999999664 469999876665

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.53  E-value=1.8e-14  Score=150.73  Aligned_cols=104  Identities=20%  Similarity=0.361  Sum_probs=93.5

Q ss_pred             CceeEEEEEEEeeecCCC---CCCCCCCCcEEEEEEC---CeeEeeccccCCCCCeeccEEEEEecC-CCcEEEEEEEEc
Q 018029           11 NSAYLIKLELLAAKNLIG---ANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDW   83 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~---~d~~g~sDPyv~i~l~---~~~~rT~~i~~t~nP~W~e~f~f~v~~-~~~~L~~~V~D~   83 (362)
                      ...+.|.|+|++|++|+.   +|..|++||||++.+.   ..+++|+++++++||.|||+|.|.+.. ....|+|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            457899999999999999   8889999999999997   467899999999999999999999985 466899999999


Q ss_pred             CCCCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~  115 (362)
                      |..+ +++||++.++|.++  +...+.|++|.+.
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             CCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            9998 99999999999998  4456899999863

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.52  E-value=1.3e-13  Score=114.93  Aligned_cols=115  Identities=14%  Similarity=0.238  Sum_probs=93.6

Q ss_pred             CCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeecccc-CCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 018029            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (362)
Q Consensus         9 ~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~-~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d   84 (362)
                      -.++.--|+|.|.+|.+|+     |++|||+.+.+...+++|+++. ++.||.|||.|.|++..   ....|.+.|||++
T Consensus        16 ~~~~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~   90 (144)
T 3l9b_A           16 PRGSHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS   90 (144)
T ss_dssp             ---CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC
T ss_pred             cCCCcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc
Confidence            3456678999999999997     5899999999999999999998 69999999999999873   3667999999999


Q ss_pred             CCCCCceeEEEEEEeccC--CCcceEEEEccCCC-----CeeEEEEEEeec
Q 018029           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----GQVCLHIKTIKL  128 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~~-----G~i~l~l~~~~~  128 (362)
                      .++++++||++.++|.++  .+....+.+|...+     +.+++.|.|.+.
T Consensus        91 ~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           91 KVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             TTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred             cccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCC
Confidence            999999999999999997  34444556665433     456666666653

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.50  E-value=3e-15  Score=141.27  Aligned_cols=103  Identities=26%  Similarity=0.390  Sum_probs=88.7

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC-----CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~-----~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~   83 (362)
                      ..+.|.|+|++|++|+.+|..|.+||||++.+.     ..+++|+++++++||.|||.|.|.+...   ...|.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            357899999999999999999999999999985     2567999999999999999999998743   34799999999


Q ss_pred             CCCCCCceeEEEEEEeccCCC-cceEEEEccC
Q 018029           84 DIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDS  114 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~~-~~~~w~~L~~  114 (362)
                      |..+++++||++.+++..++. ..++|+.+..
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~  261 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADPHGREHWAEMLA  261 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCHHHHHHHHTSSS
T ss_pred             CCCCCCceEEEEEECCccCCchhHHHHHHHHh
Confidence            999999999999999998754 5566666554

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.40  E-value=1.7e-14  Score=145.17  Aligned_cols=98  Identities=21%  Similarity=0.301  Sum_probs=15.2

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCe-eEeeccccCC---CCCeeccEEEEEecCCCcEEEEEEEE-cC-
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGS---RYPMWGEEFNFSVDELPVQIIVTIYD-WD-   84 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~-~~rT~~i~~t---~nP~W~e~f~f~v~~~~~~L~~~V~D-~d-   84 (362)
                      ...+.|.|+|++|++|+++|     ||||.+.++.. ..||++++++   +||.|||+|.|.+.+....|.++||| +| 
T Consensus         8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~   82 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDK   82 (483)
T ss_dssp             EEEECC--------------------------------------------------CCEECC------------------
T ss_pred             eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCc
Confidence            45688999999999999877     99999999765 5599999999   99999999999875446789999999 45 


Q ss_pred             --CCCCCceeEEEEEEeccC--CCcceEEEEcc
Q 018029           85 --IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (362)
Q Consensus        85 --~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~  113 (362)
                        ..+++++||.+.+++.++  +...+.|++|.
T Consensus        83 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           83 KRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             ------------------------CCEECC---
T ss_pred             cccCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence              357899999999999998  45678999994

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.38  E-value=8e-13  Score=138.22  Aligned_cols=102  Identities=27%  Similarity=0.494  Sum_probs=91.3

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEecC--CCcEEEEEEEEcCC
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI   85 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v~~--~~~~L~~~V~D~d~   85 (362)
                      .+.|.|+|++|++|+++|.+|.+||||++.+     ...+++|+++++++||.|||.|.|.+..  ....|.++|||+|.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            4678999999999999999999999999998     4567899999999999999999999873  35679999999999


Q ss_pred             CCCCceeEEEEEEeccC-CCcceEEEEccC
Q 018029           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l-~~~~~~w~~L~~  114 (362)
                      .+++++||++.+++.++ ....+.|+.|.+
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls  280 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  280 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCCEEEEEECBC
T ss_pred             ccccccccccccchhhhccCCcccceeecc
Confidence            99999999999999987 455689999975

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.13  E-value=4.4e-10  Score=119.48  Aligned_cols=107  Identities=16%  Similarity=0.261  Sum_probs=84.5

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC------eeEeeccccC-CCCCeecc-EEEEE-ec-CCCcEEEEEEEE
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPG-SRYPMWGE-EFNFS-VD-ELPVQIIVTIYD   82 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~------~~~rT~~i~~-t~nP~W~e-~f~f~-v~-~~~~~L~~~V~D   82 (362)
                      ...|.|+|++|++|+..    .+||||+|.+..      .+++|+++.+ ++||.||| +|.|. +. +....|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            46899999999999853    689999999842      3569999985 59999999 69998 64 334579999999


Q ss_pred             cCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe------eEEEEEEeec
Q 018029           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ------VCLHIKTIKL  128 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~------i~l~l~~~~~  128 (362)
                      +|    ++|||++.++|..+..+ -++++|..+.|+      +.+++.+...
T Consensus       800 ~d----ddfiG~~~lpL~~L~~G-yR~vpL~~~~g~~l~~atLfv~i~~~~~  846 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSG-YHYVCLRNEANQPLCLPALLIYTEASDY  846 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCE-EEEEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred             CC----ccEEeeEEEEHHHcCCC-ceEEEecCCCCCccCceEEEEEEEEEec
Confidence            87    78999999999999765 457888765544      5566665543

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.13  E-value=4.6e-10  Score=118.61  Aligned_cols=106  Identities=16%  Similarity=0.209  Sum_probs=84.6

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-------eeEeeccccC-CCCCeeccE-EEEE-ecC-CCcEEEEEEE
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPG-SRYPMWGEE-FNFS-VDE-LPVQIIVTIY   81 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-------~~~rT~~i~~-t~nP~W~e~-f~f~-v~~-~~~~L~~~V~   81 (362)
                      .+.|.|+|++|++|+.+    .+||||.+.+..       .+++|+++.+ ++||.|||+ |.|. +.. .-..|+|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999753    689999999842       5679999985 599999998 9998 653 2467999999


Q ss_pred             EcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe------eEEEEEEee
Q 018029           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ------VCLHIKTIK  127 (362)
Q Consensus        82 D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~------i~l~l~~~~  127 (362)
                      |++    ++|||++.++|..+..+ -++++|..+.|+      +.+++.+..
T Consensus       725 D~d----ddfiG~~~ipL~~L~~G-yR~vpL~~~~g~~~~~atLfv~i~~~~  771 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPG-YRHVPLRNESNRPLGLASVFAHIVAKD  771 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCE-EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             ecC----CCeeeEEEEEHHHcCCc-ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence            985    68999999999999765 457888776654      445555543

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.08  E-value=1.1e-09  Score=116.15  Aligned_cols=98  Identities=17%  Similarity=0.254  Sum_probs=80.2

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-C-----CeeEeec-ccc-CCCCCeecc-EEEE-EecC-CCcEEEEEE
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-G-----SEKRFSS-MVP-GSRYPMWGE-EFNF-SVDE-LPVQIIVTI   80 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-~-----~~~~rT~-~i~-~t~nP~W~e-~f~f-~v~~-~~~~L~~~V   80 (362)
                      ..+.|.|+|++|++|+.    +.+||||.+.+ +     .++++|+ ++. +++||.||| +|.| .+.. ....|+|+|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46799999999999985    46999999998 3     1357899 786 469999999 6999 7753 345799999


Q ss_pred             EEcCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        81 ~D~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      ||+|    +++||++.++|..+..+ .+|++|....|.
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G-~r~v~L~~~~g~  784 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSG-YHHLCLHSESNM  784 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             EEeC----CCccceEeeehhhcCCC-cEEEeccCCCCC
Confidence            9986    78999999999999664 568899765665

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.03  E-value=7.2e-09  Score=84.01  Aligned_cols=108  Identities=13%  Similarity=0.208  Sum_probs=83.2

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCee----Eee-ccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK----RFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~----~rT-~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~   87 (362)
                      ...|+|.+.++.--+-+......||||.+.++...    .+| ...++|..|.|++.|.-.+.+ .+.|.+.|++...  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~--   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE--   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC--
Confidence            46778888665532222233468999999996432    244 666789999999999999887 7899999996544  


Q ss_pred             CCceeEEEEEEeccC-------CCcceEEEEccCCCCeeEEEEEEe
Q 018029           88 KSTVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTI  126 (362)
Q Consensus        88 ~ddfIG~~~i~L~~l-------~~~~~~w~~L~~~~G~i~l~l~~~  126 (362)
                        +|++.+++++.++       ++..+.|+.|+| .|++++.+.+.
T Consensus        82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-QAKVLMSVQYF  124 (126)
T ss_dssp             --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-SCEEEEEEEEE
T ss_pred             --CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEe
Confidence              8999999999986       234578999998 89999998875

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.97  E-value=7.3e-09  Score=85.06  Aligned_cols=112  Identities=11%  Similarity=0.228  Sum_probs=85.6

Q ss_pred             CceeEEEEEEEeeecCCCCC-CCCCCCcEEEEEECCe----eEee-ccccCCCCCeeccEEEEEecCCCcEEEEEEEEcC
Q 018029           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGSE----KRFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWD   84 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d-~~g~sDPyv~i~l~~~----~~rT-~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d   84 (362)
                      +-...|+|.+.+..--+.+. .....||||.+.++..    ..+| ...++|..|.|++.|.-.+.+ .+.|.+.|++..
T Consensus         7 ~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a   85 (138)
T 2enj_A            7 GMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKN   85 (138)
T ss_dssp             SCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSS
T ss_pred             ccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCC
Confidence            34577888887766433222 1336899999999643    2466 566679999999999999887 789999999543


Q ss_pred             CCCCCceeEEEEEEeccC-------CCcceEEEEccCCCCeeEEEEEEeec
Q 018029           85 IIWKSTVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTIKL  128 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l-------~~~~~~w~~L~~~~G~i~l~l~~~~~  128 (362)
                      .    +|++.+++++.++       ++..+.|+.|++ .|++++.+++...
T Consensus        86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-~Gkl~v~i~~~~e  131 (138)
T 2enj_A           86 V----DLISETTVELYSLAERCRKNNGKTEIWLELKP-QGRMLMNARYFLE  131 (138)
T ss_dssp             C----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-SCEEEEEEEECCC
T ss_pred             C----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEEEe
Confidence            3    8999999999987       235688999998 8999999988643

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=96.54  E-value=0.034  Score=46.02  Aligned_cols=90  Identities=13%  Similarity=0.220  Sum_probs=56.9

Q ss_pred             ceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCcEEEEEecCCCCCCCCCCC---CCCCceeEEEeeee
Q 018029          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLG---SPDGRVRYKFASFW  268 (362)
Q Consensus       192 ~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~---~~~~~~~~~F~sf~  268 (362)
                      .|++|+|.+.+||-..-- ....+.||+.+|..++.+... +..+..|+++......+.++.+   +....-+..|.+= 
T Consensus        39 ~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~~e~~~~~-f~~s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~G-  115 (140)
T 2hth_B           39 AGTLLLSTHRLIWRDQKN-HECCMAILLSQIVFIEEQAAG-IGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEH-  115 (140)
T ss_dssp             CEEEEEESSEEEEEETTC-CSCCEEEEGGGEEEEEEECCT-TSSCCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTS-
T ss_pred             CCEEEEecCEEEEecCCC-CceEEEEEhHHeeeeeeeccc-cccCceEEEEecCCCccCCCCCcccccCcEEEEEEcCC-
Confidence            499999999999976543 457799999999999999975 4444444444332223333322   1223334444332 


Q ss_pred             chHHHHHHHHHHHHHH
Q 018029          269 NRNHALRQLQRTAKNY  284 (362)
Q Consensus       269 ~rd~~~~~l~~~~~~~  284 (362)
                      -.++-+..|.+++++.
T Consensus       116 g~~eF~~~L~~al~~k  131 (140)
T 2hth_B          116 GQIEFYRRLSEEMTQR  131 (140)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHHHHHh
Confidence            2477778887777643

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=95.16  E-value=0.12  Score=42.82  Aligned_cols=84  Identities=17%  Similarity=0.198  Sum_probs=58.6

Q ss_pred             ceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechH
Q 018029          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRN  271 (362)
Q Consensus       192 ~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd  271 (362)
                      .|++|+|...+||-..-......+.+|+.+|.+++.+... +..++.|+++...+       .+.....+..|.+=-. +
T Consensus        52 ~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~-fg~s~Ki~l~~~p~-------~~~~~~~KLsFk~GGa-~  122 (145)
T 2cay_A           52 RGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGF-LTRSPRLILFFKDP-------SSSTEFVQLSFRKSDG-V  122 (145)
T ss_dssp             SEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSS-SSSSCEEEEEESSC-------SSTTCCEEEEESSSCC-H
T ss_pred             ccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCc-cccCceEEEEecCC-------CCCceEEEEEEcCCCc-h
Confidence            4999999999999765433336799999999999998876 34566666653211       1223456677766554 7


Q ss_pred             HHHHHHHHHHHHH
Q 018029          272 HALRQLQRTAKNY  284 (362)
Q Consensus       272 ~~~~~l~~~~~~~  284 (362)
                      +-++.|.+++++.
T Consensus       123 eF~~~l~~al~~~  135 (145)
T 2cay_A          123 LFSQATERALENI  135 (145)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777644

>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B

Probab=92.44  E-value=0.74  Score=36.02  Aligned_cols=96  Identities=15%  Similarity=0.224  Sum_probs=64.0

Q ss_pred             CCcceeeeehhhhhhccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCcEEEEEecCCCCCCCCC
Q 018029          173 PDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPP  252 (362)
Q Consensus       173 ~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~  252 (362)
                      ++|+|.....-.|++.-   |.||++..++-|..+-- ..-.+.+++.||...+-+....===-+.|+.+.|        
T Consensus         5 ~~~~ll~v~~v~yKK~d---GtL~l~~d~i~W~p~~~-~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~--------   72 (108)
T 1pfj_A            5 SEEVLLIVKKVRQKKQD---GALYLMAERIAWAPEGK-DRFTISHMYADIKCQKISPEGKAKIQLQLVLHAG--------   72 (108)
T ss_dssp             SCCEEEEESCCBCSSCB---CEEEEETTEEEEECSSS-SSCSEEEETTTCCCEEECCSSSSSCEEEEECSSS--------
T ss_pred             chheeEEehhheeecCC---ceEEEEcceEEEccCCC-CCceEEEehhhhhcceeCCCCCccEEEEEEEeCC--------
Confidence            45777777777776643   99999999999888543 4566788999999865554321001467777543        


Q ss_pred             CCCCCCceeEEEeeee----chHHHHHHHHHHHHHHH
Q 018029          253 LGSPDGRVRYKFASFW----NRNHALRQLQRTAKNYH  285 (362)
Q Consensus       253 ~~~~~~~~~~~F~sf~----~rd~~~~~l~~~~~~~~  285 (362)
                           +...|.|++=-    .||..=++|.+++...+
T Consensus        73 -----~~~~F~Ftn~~~a~~erd~VKd~L~~~l~~~k  104 (108)
T 1pfj_A           73 -----DTTNFHFSNESTAVKERDAVKDLLQQLLPKFK  104 (108)
T ss_dssp             -----CEEEEECCCSSCTTHHHHHHHHHHHHHHHHHS
T ss_pred             -----CceEEEEcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence                 45678888743    36666666766666543

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=89.83  E-value=9.3  Score=33.64  Aligned_cols=56  Identities=11%  Similarity=0.058  Sum_probs=40.7

Q ss_pred             eEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEcCCCC----CCceeEEEEEEeccC
Q 018029           47 KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWDIIW----KSTVLGSVIVTVESE  102 (362)
Q Consensus        47 ~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~d~~~----~ddfIG~~~i~L~~l  102 (362)
                      ..+|.+...+.+|.|+|++.+.++..   ...|.|+++....-.    .+..+|-+.++|-+-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~  140 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRY  140 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCT
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccC
Confidence            34778888889999999999999842   456999999865321    224677777776544

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=89.78  E-value=2.7  Score=45.10  Aligned_cols=87  Identities=13%  Similarity=0.132  Sum_probs=60.8

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEE--CCe----eEeeccccCCCCCeeccEEEEEec----CCCcEEEEEEEE
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSE----KRFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYD   82 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~~----~~rT~~i~~t~nP~W~e~f~f~v~----~~~~~L~~~V~D   82 (362)
                      ...+.|+|.++.++...   ..++-||.+.+  |.+    ...|..+.-..+|.|||...|++.    +....|.|+||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            56789999999998643   34677877765  322    335555555678999999999875    346789999999


Q ss_pred             cCCC--C----------CCceeEEEEEEeccC
Q 018029           83 WDII--W----------KSTVLGSVIVTVESE  102 (362)
Q Consensus        83 ~d~~--~----------~ddfIG~~~i~L~~l  102 (362)
                      ....  +          .+..||.+.++|-+-
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECC
Confidence            7432  1          245899999999774

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=86.67  E-value=2  Score=42.85  Aligned_cols=52  Identities=17%  Similarity=0.199  Sum_probs=38.9

Q ss_pred             cccceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCcEEEEEec
Q 018029          189 FLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRM  243 (362)
Q Consensus       189 ~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~  243 (362)
                      -...|.||+|..++.|.+..   ...+-||+.-|..|+|.....-...|.|.+++
T Consensus        23 ~~~~GtL~lTn~~LiF~~~~---~~e~wi~~~~I~~VeK~~~~~~~~~l~I~CKD   74 (512)
T 2yf0_A           23 KSLTGTLYLTATHLLFIDSH---QKETWILHHHIASVEKLALTTSGCPLVIQCKN   74 (512)
T ss_dssp             -CCEEEEEECSSEEEEEESS---SCEEEEEGGGEEEEEECCCBTTBEEEEEEETT
T ss_pred             CceeEEEEEECCEEEEeCCC---CCceEecccceeEEEEecCCCCCceEEEEecC
Confidence            45679999999999999932   33468999999999997643223367777754

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=84.95  E-value=6.7  Score=42.59  Aligned_cols=88  Identities=15%  Similarity=0.199  Sum_probs=60.0

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEE--CC----eeEeeccccCCCCCeeccEEEEEec----CCCcEEEEEEEE
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GS----EKRFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYD   82 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~~----~~~rT~~i~~t~nP~W~e~f~f~v~----~~~~~L~~~V~D   82 (362)
                      ...+.|+|+.+.++.. +.....+-||...+  |.    ....|..+. ..+|.|||...|++.    +...+|.|+||+
T Consensus       354 ~~~f~v~i~~~~~~n~-~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNV-NIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCC-CCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCC-CccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            3578899999988753 33334677888776  32    233444333 457889999999875    346789999999


Q ss_pred             cCCC----CCCceeEEEEEEeccC
Q 018029           83 WDII----WKSTVLGSVIVTVESE  102 (362)
Q Consensus        83 ~d~~----~~ddfIG~~~i~L~~l  102 (362)
                      ....    .....||.+.++|-+-
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCT
T ss_pred             ecCccCcccccceeEEeeeeeEcc
Confidence            7642    1245899999999874

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=84.68  E-value=5  Score=41.08  Aligned_cols=72  Identities=18%  Similarity=0.289  Sum_probs=48.1

Q ss_pred             ccCCCcceeee-----ehhhhhhccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEecc--ccc-cC-cEEEE
Q 018029          170 NLLPDEFVELS-----YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH--AFI-NP-AITII  240 (362)
Q Consensus       170 ~lp~~E~l~~~-----~~c~l~~~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~--~~~-~~-~i~i~  240 (362)
                      .+-++|.++..     |.|-..  -...|.||+|..++.|.+..-...-.+-||+.-|..|+|...  ... .+ .|.|.
T Consensus        80 ~LLPGE~v~~~~~~V~~~~p~~--~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~  157 (657)
T 1lw3_A           80 PLLPGENIKDMAKDVTYICPFT--GAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETV  157 (657)
T ss_dssp             CCCTTCCEEEEEEEEEEEETTT--EEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEE
T ss_pred             ccCCCeeEEEEeCCEEEecCCC--CceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecCCCcccCCCCceEEEE
Confidence            44456666533     223222  246799999999999998654344568899999999999752  111 22 58888


Q ss_pred             Eec
Q 018029          241 LRM  243 (362)
Q Consensus       241 ~~~  243 (362)
                      +++
T Consensus       158 CKD  160 (657)
T 1lw3_A          158 CKD  160 (657)
T ss_dssp             ETT
T ss_pred             ecC
Confidence            764

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=82.17  E-value=6  Score=39.53  Aligned_cols=54  Identities=13%  Similarity=0.226  Sum_probs=40.7

Q ss_pred             ccceeEEEecceEEEeecCCCceeEEEeecccceEEEEecc--ccc-cC-cEEEEEec
Q 018029          190 LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH--AFI-NP-AITIILRM  243 (362)
Q Consensus       190 ~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~--~~~-~~-~i~i~~~~  243 (362)
                      ...|.||+|..++.|.+..-...-.+-||+.-|..|+|...  ... .+ .|.|.+++
T Consensus        31 ~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~CKD   88 (528)
T 1zsq_A           31 AVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKD   88 (528)
T ss_dssp             EEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETT
T ss_pred             ceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCCCCcCCCCCceEEEEccC
Confidence            46799999999999998654345568999999999999753  111 22 68888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-16
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-16
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-14
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-12
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-12
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-12
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	1e-11
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	4e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	9e-11
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-10
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	4e-10
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-09
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-09
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	4e-09
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-08

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 1e-16
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 66

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI 126
            + VT++D D       LG V + + S        Y L +        G + L +  I
Sbjct: 67  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI 124

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.5 bits (177), Expect = 3e-16
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 75  QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
           ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.4 bits (164), Expect = 2e-14
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ + +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +
Sbjct: 16  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +   ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 76  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 1e-12
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNL---IGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +        ++ +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D      + +T+ D + +     LG+   TV S   G+   V +   +   ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIF-NQVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 11  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 67

Query: 62  GEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +    ++   +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 68  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 127

Query: 118 QVC 120
           Q+ 
Sbjct: 128 QIA 130

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYA---IITCGSEKRFSSMVPGSR 57
                 D Q N    + + ++ A  L   ++ GTSDPY    ++    +K  + +   + 
Sbjct: 24  QYSLDYDFQNNQ---LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 80

Query: 58  YPMWGEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTL 112
            P++ E+F F V    +    +++ +YD+D   K  ++G   V + +   G     W  L
Sbjct: 81  NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

Query: 113 DS 114
            S
Sbjct: 141 QS 142

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 10/102 (9%)

Query: 31  LNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85
            +  S P+  +           +       + YP W   F+  + E  V I + +     
Sbjct: 20  EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV-IQIVLMRAAE 78

Query: 86  IWKSTV---LGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
              S V   +  +    +        W  L  P  +V + ++
Sbjct: 79  DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-PQAKVLMCVQ 119

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSVD 70
           + + +L AK+L         +PY  I          KR +  V  +  P W + F +S  
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75

Query: 71  ELP----VQIIVTIYDWDIIWKS--TVLGSVIVTVES-EGQTGAVWYTL 112
                    + +T++D   + +     LG +++ +E+        WY L
Sbjct: 76  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 124

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (139), Expect = 4e-11
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 16  IKLELLAAKNL--IGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNF 67
           +++ +++ + L  +  N N   DP  I+           ++ + +      P W  EF F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 68  SV-DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118
            V       +   + D+D   K+  +G   +      + G     L S +G 
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWN-SLKQGYRHVHLLSKNGD 116

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.1 bits (137), Expect = 9e-11
 Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++   +L   + NG SDP+  +          K  + +   +  P + EEF + + 
Sbjct: 17  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQVC 120
             D     + ++++D+DI   +  +G   + + ++G+    WY    +   ++ 
Sbjct: 77  HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 130

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.7 bits (133), Expect = 3e-10
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 20/121 (16%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITC--------------GSEKRFSSMVPGSRYPMW 61
           + + +L A+NL+  + NG SDP+  +                   KR +  V  S  P W
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79

Query: 62  GEEFNFSV----DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSP 115
            +   +        +   + VT++D+D    +  LG V++ + S         WY L   
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139

Query: 116 S 116
           +
Sbjct: 140 T 140

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.1 bits (132), Expect = 4e-10
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+ + +  AK           + Y  +   + K  +  V GS  P W ++F F ++ L +
Sbjct: 3   LLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDL 58

Query: 75  QIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGAVWYTLDSPS----GQVC 120
            + V +++  +IW     TV   +    +S  +    W TLDS +     ++C
Sbjct: 59  GLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEIC 111

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           +++ +++AK            PY  +T   + + +     +  P W +     V     +
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSK 66

Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLD 113
           +   ++    +    +LG+  + +         +   V  TL 
Sbjct: 67  LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ 109

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFN 66
           +A L+ + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   
Sbjct: 18  TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77

Query: 67  FSV---DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTG-AVWYTL-DSPSGQVC 120
           F V       V + + + D+D I  + V+G   V  E+    G   W  +  +P   V 
Sbjct: 78  FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE 136

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-----SSMVPGSRYPMWGEEFNFSVD 70
           + + +L AKNL   ++ G SDPY  I      +      +++   +  P + E F+F V 
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 71  ELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
              +Q   ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 52.2 bits (124), Expect = 4e-09
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE----SEGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E    +  +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 16  IKLELLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV-- 69
             + +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPSG 117
                 + +  TI  +D   +  ++G V++ +   E   G +    +  SG
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.88
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.85
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.81
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.8
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.8
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.77
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.75
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.74
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.74
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.74
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.73
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.69
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.68
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.67
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.66
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.64
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.62
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.58
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.54
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.38
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	95.21
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	94.29
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	94.14
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	93.92
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	93.28
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	92.28

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-22  Score=164.80  Aligned_cols=115  Identities=23%  Similarity=0.435  Sum_probs=104.7

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddf   91 (362)
                      +.|.|.|+|++|++|+.++..|.+||||++.+++++++|+++.++.||.|+|.|.|.+.+....|.|+|||++..+++++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~   83 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDF   83 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcce
Confidence            45899999999999999999999999999999999999999999999999999999998877889999999999989999


Q ss_pred             eEEEEEEeccCCCcceEEEEccC------CCCeeEEEEEEe
Q 018029           92 LGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (362)
Q Consensus        92 IG~~~i~L~~l~~~~~~w~~L~~------~~G~i~l~l~~~  126 (362)
                      ||++.++|.++..+...|+.|..      ..|++++++++.
T Consensus        84 lG~~~i~l~~l~~~~~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          84 LGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             CCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEEEHHHCCCCCceEEEccccCCCCceeEEEEEEEEEE
Confidence            99999999999777788998863      248888877765

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=5.9e-21  Score=158.14  Aligned_cols=120  Identities=22%  Similarity=0.383  Sum_probs=104.5

Q ss_pred             CCCceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeecccc-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 018029            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (362)
Q Consensus         9 ~~~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~-~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~   87 (362)
                      +.++.|.|.|+|++|++|+.++..|++||||+++++...++|+++. ++.||.|||+|.|.+.+....|.|+|||+|..+
T Consensus         5 ~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~   84 (136)
T d1wfja_           5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCC
Confidence            3456799999999999999999999999999999999889999887 589999999999999987778999999999999


Q ss_pred             CCceeEEEEEEeccC---CCcceEEEEccCC---CCeeEEEEEEeec
Q 018029           88 KSTVLGSVIVTVESE---GQTGAVWYTLDSP---SGQVCLHIKTIKL  128 (362)
Q Consensus        88 ~ddfIG~~~i~L~~l---~~~~~~w~~L~~~---~G~i~l~l~~~~~  128 (362)
                      +|++||++.++|.++   +.....|+.|...   .|+|++.+++.+.
T Consensus        85 ~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeC
Confidence            999999999999986   3445679988632   3788888887654

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.81  E-value=1.9e-19  Score=149.16  Aligned_cols=113  Identities=18%  Similarity=0.258  Sum_probs=98.7

Q ss_pred             eeEEEEEEEeeecCCCCC-----------CCCCCCcEEEEEECCee-EeeccccCCCCCeeccEEEEEecCCCcEEEEEE
Q 018029           13 AYLIKLELLAAKNLIGAN-----------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTI   80 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d-----------~~g~sDPyv~i~l~~~~-~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V   80 (362)
                      .|.|.|+|++|++|++++           ..+.+||||++.++... .+|+++.++.||.|||.|.|.+.+ .+.|.|+|
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V   83 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEE
Confidence            589999999999999864           46679999999998765 489999999999999999999975 57899999


Q ss_pred             EEcCCCCCCceeEEEEEEeccC--C--CcceEEEEccCCCCeeEEEEEEee
Q 018029           81 YDWDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDSPSGQVCLHIKTIK  127 (362)
Q Consensus        81 ~D~d~~~~ddfIG~~~i~L~~l--~--~~~~~w~~L~~~~G~i~l~l~~~~  127 (362)
                      ||++..++|++||.+.++|.++  .  ...+.|++|.+ .|++++.+.+..
T Consensus        84 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-~G~v~l~v~~~~  133 (136)
T d1gmia_          84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSG  133 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             EEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC-CcEEEEEEEEEe
Confidence            9999999999999999999987  2  34678999986 799999888764

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.6e-19  Score=148.67  Aligned_cols=102  Identities=27%  Similarity=0.487  Sum_probs=91.5

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEecCC--CcEEEEEEEEcCC
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDI   85 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v~~~--~~~L~~~V~D~d~   85 (362)
                      .+.|.|+|++|++|+.+|..|.+||||++++     +..+++|+++.++.||.|||.|.|.+...  ...|.|+|||+|.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            4789999999999999999999999999998     45678999999999999999999998743  4579999999999


Q ss_pred             CCCCceeEEEEEEeccC-CCcceEEEEccC
Q 018029           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l-~~~~~~w~~L~~  114 (362)
                      .+++++||++.++|.++ ....++||+|.+
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~~~~~W~~L~~  123 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  123 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCcEeEEEEEeHHHcCCCCCCeEEECCC
Confidence            99999999999999997 445678999975

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.8e-19  Score=146.94  Aligned_cols=113  Identities=19%  Similarity=0.333  Sum_probs=94.5

Q ss_pred             eeEEEEEEEeeecCCCC---CCCCCCCcEEEEEECC---eeEeeccccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCC
Q 018029           13 AYLIKLELLAAKNLIGA---NLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDI   85 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~---d~~g~sDPyv~i~l~~---~~~rT~~i~~t~nP~W~e~f~f~v~~~-~~~L~~~V~D~d~   85 (362)
                      .+.|+|+|++|++|+..   |..|.+||||++.++.   ++++|+++.++.||.|+|+|.|.+.+. ...|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            47899999999999874   4568999999999963   677999999999999999999999754 5679999999987


Q ss_pred             CCCCceeEEEEEEeccC--CCcceEEEEccCC-CCeeEEEEEEe
Q 018029           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI  126 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~-~G~i~l~l~~~  126 (362)
                      . ++++||++.++|.++  +...+.||+|.+. .|++++.+++.
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~  124 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA  124 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEE
Confidence            5 578999999999998  5667889999863 35666655543

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.7e-18  Score=141.61  Aligned_cols=89  Identities=11%  Similarity=0.231  Sum_probs=81.7

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI   92 (362)
                      .+.|.|+|++|++++.++..+.+||||++.++.+.++|+++.++.||.|||.|.|.+.+ ...|.|+|||+|..++|++|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceE
Confidence            37899999999999999889999999999999999999999999999999999999875 56899999999999999999


Q ss_pred             EEEEEEeccC
Q 018029           93 GSVIVTVESE  102 (362)
Q Consensus        93 G~~~i~L~~l  102 (362)
                      |++.++|.++
T Consensus        84 G~~~i~L~~l   93 (133)
T d2nq3a1          84 GTAALDIYET   93 (133)
T ss_dssp             EEEEEEHHHH
T ss_pred             EEEEEEHHHh
Confidence            9999999876

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=3.8e-18  Score=142.27  Aligned_cols=103  Identities=23%  Similarity=0.427  Sum_probs=91.4

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE---CCeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCC
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDI   85 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l---~~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d~   85 (362)
                      ..+.|.|+|++|++|+.++..|.+||||++.+   +....+|++++++.||.|||.|.|.+..   ....|.|+|||++.
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC
Confidence            34689999999999999999999999999998   4566799999999999999999998753   25679999999999


Q ss_pred             CCCCceeEEEEEEeccC--CCcceEEEEccC
Q 018029           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (362)
Q Consensus        86 ~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~  114 (362)
                      .+++++||++.++|.++  +....+|++|.+
T Consensus       112 ~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            99999999999999998  556789999974

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.2e-17  Score=135.55  Aligned_cols=104  Identities=21%  Similarity=0.303  Sum_probs=84.5

Q ss_pred             eEEEEEEEeeecCCC--CCCCCCCCcEEEEEE-----CCeeEeeccccC-CCCCeeccEEEEEecC-CCcEEEEEEEEcC
Q 018029           14 YLIKLELLAAKNLIG--ANLNGTSDPYAIITC-----GSEKRFSSMVPG-SRYPMWGEEFNFSVDE-LPVQIIVTIYDWD   84 (362)
Q Consensus        14 ~~L~V~Vi~A~~L~~--~d~~g~sDPyv~i~l-----~~~~~rT~~i~~-t~nP~W~e~f~f~v~~-~~~~L~~~V~D~d   84 (362)
                      ..|.|+|++|++|+.  .+.+|++||||++.+     +..+.+|+++++ ++||.|+|+|.|.+.. ....|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            579999999999964  456788999999998     356779998865 4799999999998864 3567999999999


Q ss_pred             CCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           85 IIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      ..+++++||++.++|..+..+ ..|++|..+.|+
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g-~~~~~L~~~~g~  116 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGD  116 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE-EEEEEEECTTSC
T ss_pred             CCCCCcEEEEEEEEEeccCCC-CEEEECCCCCcC
Confidence            999999999999999998654 579999766664

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1e-18  Score=145.29  Aligned_cols=104  Identities=25%  Similarity=0.420  Sum_probs=89.5

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC--------------CeeEeeccccCCCCCeeccEEEEEecC----CCc
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG--------------SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPV   74 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--------------~~~~rT~~i~~t~nP~W~e~f~f~v~~----~~~   74 (362)
                      .+.|.|+|++|++|+.++..|.+||||++++.              ..+++|++++++.||.|||.|.|....    ...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            47899999999999999999999999999982              122479999999999999999997431    356


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEeccC--CCcceEEEEccCCC
Q 018029           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (362)
Q Consensus        75 ~L~~~V~D~d~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~~  116 (362)
                      .|.|+|||+|..+++++||++.++|.++  ......||+|.++.
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            7999999999999999999999999997  55677999998754

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=4.9e-18  Score=139.30  Aligned_cols=104  Identities=23%  Similarity=0.376  Sum_probs=89.4

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE---CCeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l---~~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D~d   84 (362)
                      +..+.|.|+|++|++|+.++..|.+||||++++   +...++|+++.++.||.|+|.|.|.+...   ...|.|+|||++
T Consensus        15 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            456899999999999999999999999999998   35568999999999999999999998632   456999999999


Q ss_pred             CCCCCceeEEEEEEeccC----CCcceEEEEccC
Q 018029           85 IIWKSTVLGSVIVTVESE----GQTGAVWYTLDS  114 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l----~~~~~~w~~L~~  114 (362)
                      ..+++++||++.+++...    ......|++|.+
T Consensus        95 ~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          95 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             CCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            999999999999986432    334567999986

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.6e-17  Score=136.03  Aligned_cols=98  Identities=22%  Similarity=0.399  Sum_probs=85.7

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCCcEEEEEECCeeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 018029           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (362)
Q Consensus        13 ~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~ddfI   92 (362)
                      ++.|.|+|.+|++|.+++   +.||||++.+++.+.+|.++++ .||.|+|.|.|.+.++...|.|+|||++.. +|++|
T Consensus         1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~l   75 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMV   75 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEE
T ss_pred             CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcce
Confidence            368999999999999876   6899999999999999988864 599999999999998888899999999876 68999


Q ss_pred             EEEEEEeccC----CCcceEEEEccCC
Q 018029           93 GSVIVTVESE----GQTGAVWYTLDSP  115 (362)
Q Consensus        93 G~~~i~L~~l----~~~~~~w~~L~~~  115 (362)
                      |++.++|.++    ....+.||.|..+
T Consensus        76 G~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          76 GTVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             EEEEEEehhhccCCCCCCCeeEECCcc
Confidence            9999999997    2345689999753

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.8e-17  Score=131.37  Aligned_cols=103  Identities=23%  Similarity=0.422  Sum_probs=83.6

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEE-ecC---CCcEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY   81 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~-v~~---~~~~L~~~V~   81 (362)
                      +..+.|.|+|++|++|+.++..+.+||||++.+     ...+++|++++++.+|.|||.|.|. +..   ....|.|+||
T Consensus        11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            445789999999999999999999999999998     2456799999999999999999997 432   2456999999


Q ss_pred             EcCCCC--CCceeEEEEEEeccC-CCcceEEEEcc
Q 018029           82 DWDIIW--KSTVLGSVIVTVESE-GQTGAVWYTLD  113 (362)
Q Consensus        82 D~d~~~--~ddfIG~~~i~L~~l-~~~~~~w~~L~  113 (362)
                      |.+..+  ++++||++.++|.++ .....+||+|+
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~~~~~Wy~L~  125 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLDDEPHWYKLQ  125 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCCCCCEEEeCc
Confidence            999753  457999999999998 35567899984

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=3e-17  Score=135.35  Aligned_cols=108  Identities=17%  Similarity=0.322  Sum_probs=92.0

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE-----CCeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l-----~~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D   82 (362)
                      +..+.|.|+|++|++|+.++..+.+||||.+.+     ...+++|++++++.+|.|||+|.|.+...   ...|.|+|||
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            456899999999999999999999999999998     24557999999999999999999998632   4579999999


Q ss_pred             cCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      ++..+++++||++.+++..+....++|+.|....++
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~  127 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDK  127 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTC
T ss_pred             CCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCCC
Confidence            999999999999999998876666778887654444

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.4e-16  Score=130.45  Aligned_cols=101  Identities=16%  Similarity=0.201  Sum_probs=86.8

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC----CeeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 018029           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~----~~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D~d   84 (362)
                      ..+.|.|+|++|++|+   ..|.+||||++.+.    ...++|++++++.||.|+|.|.|.+..   ....|.|+|||++
T Consensus        24 ~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~  100 (138)
T d1wfma_          24 QKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeec
Confidence            4578999999999995   35789999999983    234689999999999999999999863   2467999999999


Q ss_pred             CCCCCceeEEEEEEeccC--CCcceEEEEccCC
Q 018029           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (362)
Q Consensus        85 ~~~~ddfIG~~~i~L~~l--~~~~~~w~~L~~~  115 (362)
                      ..+++++||++.++|.++  ....+.|+.|.++
T Consensus       101 ~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_         101 RFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             ccccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence            999999999999999997  4567899999874

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=5e-17  Score=134.52  Aligned_cols=108  Identities=18%  Similarity=0.338  Sum_probs=83.6

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEE--C---CeeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC--G---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l--~---~~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D   82 (362)
                      +..+.|.|+|++|++|+.++..+.+||||++.+  +   ..+++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d   91 (138)
T d1w15a_          12 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD   91 (138)
T ss_dssp             TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEe
Confidence            445789999999999999999999999999998  2   2345899999999999999999998632   3469999999


Q ss_pred             cCCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      +|..+++++||++.+++...+...++|+.|....|+
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k  127 (138)
T d1w15a_          92 SERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR  127 (138)
T ss_dssp             CCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTC
T ss_pred             CCCCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCC
Confidence            999999999999999998765555667775433343

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-15  Score=126.39  Aligned_cols=91  Identities=19%  Similarity=0.323  Sum_probs=79.3

Q ss_pred             ceeEEEEEEEeeecCCCCCCCCC-CCcEEEEEE---CCeeEeeccccCCCCCeeccEEEEE-ecCC---CcEEEEEEEEc
Q 018029           12 SAYLIKLELLAAKNLIGANLNGT-SDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFS-VDEL---PVQIIVTIYDW   83 (362)
Q Consensus        12 ~~~~L~V~Vi~A~~L~~~d~~g~-sDPyv~i~l---~~~~~rT~~i~~t~nP~W~e~f~f~-v~~~---~~~L~~~V~D~   83 (362)
                      ..+.|.|+|++|++|+.++..+. +||||.+.+   +...++|++++++.||.|||.|.|. +...   ...|+|+|||+
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~   99 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence            35789999999999999887664 799999998   4567899999999999999999997 4321   45799999999


Q ss_pred             CCCCCCceeEEEEEEeccC
Q 018029           84 DIIWKSTVLGSVIVTVESE  102 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l  102 (362)
                      |..+++++||++.++|.++
T Consensus       100 d~~~~~~~iG~~~i~L~~~  118 (138)
T d1ugka_         100 DRFSRDDIIGEVLIPLSGI  118 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTC
T ss_pred             CCCCCCcEEEEEEEEcccc
Confidence            9999999999999999997

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.5e-15  Score=128.26  Aligned_cols=92  Identities=33%  Similarity=0.478  Sum_probs=80.6

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEEC--C---eeEeeccccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~--~---~~~rT~~i~~t~nP~W~e~f~f~v~~~---~~~L~~~V~D   82 (362)
                      +..+.|.|+|++|++|+.++..+.+||||++.+.  .   ..++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        22 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d  101 (157)
T d1uowa_          22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (157)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcc
Confidence            4458999999999999999999999999999983  2   234899999999999999999998642   4579999999


Q ss_pred             cCCCCCCceeEEEEEEeccC
Q 018029           83 WDIIWKSTVLGSVIVTVESE  102 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l  102 (362)
                      ++..+++++||++.+++...
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_         102 YDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             CCSSSCCCEEEEEEEETTCC
T ss_pred             cCCCCCCceeEEEEEecccC
Confidence            99999999999999999764

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=6.2e-15  Score=119.51  Aligned_cols=105  Identities=15%  Similarity=0.259  Sum_probs=84.0

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCC
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKS   89 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~~~~~L~~~V~D~d~~~~d   89 (362)
                      .+.|.+..+..++  ...+.+||||.+.++.     ...+|.++++|+||.|||+|.|.+.+ .+.|.|.|||+|    +
T Consensus         6 ~~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d   78 (123)
T d1bdya_           6 RISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----T
T ss_pred             EEEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----c
Confidence            3444445555544  4578899999999943     23478888999999999999999976 578999999986    6


Q ss_pred             ceeEEEEEEeccC-------CCcceEEEEccCCCCeeEEEEEEee
Q 018029           90 TVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTIK  127 (362)
Q Consensus        90 dfIG~~~i~L~~l-------~~~~~~w~~L~~~~G~i~l~l~~~~  127 (362)
                      +++|.+.+.+..+       +...+.|+.|.+ .|++++.+++..
T Consensus        79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-~Gkl~l~v~~f~  122 (123)
T d1bdya_          79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-QAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             cccCccEEehhheeeccccCCCcccEEEeCCC-CEEEEEEEEEec
Confidence            8999999999876       456779999985 799999988764

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.8e-16  Score=130.98  Aligned_cols=104  Identities=27%  Similarity=0.401  Sum_probs=87.8

Q ss_pred             CceeEEEEEEEeeecCCCCCCCCCCCcEEEEEECC-----eeEeeccccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 018029           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (362)
Q Consensus        11 ~~~~~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~~-----~~~rT~~i~~t~nP~W~e~f~f~v~~---~~~~L~~~V~D   82 (362)
                      +..+.|.|+|++|+||+..+..+.+||||++.+..     .+++|++++++.||.|+|.|.|.+..   ....|.|.|||
T Consensus        17 ~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d   96 (145)
T d1dqva2          17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD   96 (145)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEe
Confidence            45689999999999999999999999999999842     35689999999999999999998763   24569999999


Q ss_pred             cCCCCCCceeEEEEEEeccCC-CcceEEEEccC
Q 018029           83 WDIIWKSTVLGSVIVTVESEG-QTGAVWYTLDS  114 (362)
Q Consensus        83 ~d~~~~ddfIG~~~i~L~~l~-~~~~~w~~L~~  114 (362)
                      ++..+++++||++.++++.+. .+..+|+.|..
T Consensus        97 ~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~  129 (145)
T d1dqva2          97 YDCIGHNEVIGVCRVGPEAADPHGREHWAEMLA  129 (145)
T ss_dssp             CCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSS
T ss_pred             cCCCCCCcEEEEEEECchHcCchhhHHHHHHHh
Confidence            999999999999999998763 33456777654

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.1e-12  Score=103.07  Aligned_cols=95  Identities=17%  Similarity=0.255  Sum_probs=72.8

Q ss_pred             EEEEEEEeeecCCCCCCCCCCCcEEEEEEC------CeeEeecc--ccCCCCCeeccE-EEE-EecC-CCcEEEEEEEEc
Q 018029           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSM--VPGSRYPMWGEE-FNF-SVDE-LPVQIIVTIYDW   83 (362)
Q Consensus        15 ~L~V~Vi~A~~L~~~d~~g~sDPyv~i~l~------~~~~rT~~--i~~t~nP~W~e~-f~f-~v~~-~~~~L~~~V~D~   83 (362)
                      .|.|+|++|++|+.+    +.||||.+.+-      ..+.+|++  ..+++||.|||+ |.+ .+.. ....|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            589999999999765    48999999982      23344444  357899999976 444 3443 245799999997


Q ss_pred             CCCCCCceeEEEEEEeccCCCcceEEEEccCCCCe
Q 018029           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (362)
Q Consensus        84 d~~~~ddfIG~~~i~L~~l~~~~~~w~~L~~~~G~  118 (362)
                      |    +++||++.++|..+..+ .+|++|..+.|+
T Consensus        78 d----~~~lG~~~ipl~~l~~G-yR~vpL~~~~g~  107 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG-YHHLCLHSESNM  107 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             C----CCEEEEEEEEcccCcCC-ceEEEccCCCcC
Confidence            5    68999999999998665 578899877776

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.079  Score=40.89  Aligned_cols=61  Identities=15%  Similarity=0.275  Sum_probs=45.0

Q ss_pred             ehhhhhhccccceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccc----cCcEEEEEec
Q 018029          181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI----NPAITIILRM  243 (362)
Q Consensus       181 ~~c~l~~~~~~~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~----~~~i~i~~~~  243 (362)
                      |.|.+..  ++.|.||+|.-++.|.+.--...-.+-||+.-|..|+|......    ...+.|.+++
T Consensus        20 ~~~p~~~--~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~CKD   84 (125)
T d1zsqa1          20 YICPFTG--AVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKD   84 (125)
T ss_dssp             EEETTTE--EEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETT
T ss_pred             EEccCCC--ccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEEEEecc
Confidence            4454433  45799999999999998765555667899999999998754322    1368888865

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.21  Score=37.35  Aligned_cols=77  Identities=13%  Similarity=0.216  Sum_probs=51.2

Q ss_pred             ceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechH
Q 018029          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRN  271 (362)
Q Consensus       192 ~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~sf~~rd  271 (362)
                      .|.||++...+-|..+- +...++.+++.||...+-++...==+.+.|+.+.|             ....|.|++--++.
T Consensus        21 ~GtL~l~~d~l~W~p~~-~~~~~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~~-------------~s~~F~Ftn~~~~~   86 (108)
T d2rnrb1          21 DGALYLMAERIAWAPEG-KDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAG-------------DTTNFHFSNESTAV   86 (108)
T ss_dssp             EEEEEECSSEEEEEESS-CSSCSEEEETTTEEEEEECCTTCSSEEEEEEETTS-------------CEEEEEECCTTTHH
T ss_pred             CcEEEEEcCeEEEEcCC-CCCceEEEEhhhhhceecCCCCcccceeEEEEeCC-------------CeEEEEECChHHHH
Confidence            49999999999999875 44556999999998876665432223677887654             34567777654543


Q ss_pred             HHHHHHHHHHH
Q 018029          272 HALRQLQRTAK  282 (362)
Q Consensus       272 ~~~~~l~~~~~  282 (362)
                      ..-+.+.++++
T Consensus        87 ~~Rd~iK~~Lq   97 (108)
T d2rnrb1          87 KERDAVKDLLQ   97 (108)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33444444444

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.035  Score=42.05  Aligned_cols=83  Identities=16%  Similarity=0.177  Sum_probs=55.2

Q ss_pred             eehhhhhh-ccccceeEEEecceEEEeecCCCc--------------eeEEEeecccceEEEEeccccccCcEEEEEecC
Q 018029          180 SYSCVIER-SFLYHGRMYVSAWHICFHSNAFSR--------------QMKVIIPIGDIDEIQRSQHAFINPAITIILRMG  244 (362)
Q Consensus       180 ~~~c~l~~-~~~~~G~lyis~~~~cF~S~~~g~--------------~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~~  244 (362)
                      +..|.|.. ..-+.|++.++.+.++|..+....              .....+|++||..|-+-.-..---||+|.+.+|
T Consensus         6 s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~ll~~~alEif~~~~   85 (110)
T d1t77a2           6 STPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANR   85 (110)
T ss_dssp             EEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEEETTS
T ss_pred             EeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhcCCceEEEEEEcCC
Confidence            45677766 444569999999999998753211              122479999999999866433334999999643


Q ss_pred             CCCCCCCCCCCCCCceeEEEeeeechHHHHHHHH
Q 018029          245 AGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQ  278 (362)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~  278 (362)
                                     ..|+|. |.+.+..-+++.
T Consensus        86 ---------------~s~~~~-F~~~~~~~~v~~  103 (110)
T d1t77a2          86 ---------------VAVMFN-FPDPATVKKVVN  103 (110)
T ss_dssp             ---------------CEEEEE-CSSHHHHHHHHH
T ss_pred             ---------------cEEEEE-eCCHHHHHHHHH
Confidence                           345443 776555554443

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.7  Score=35.40  Aligned_cols=47  Identities=13%  Similarity=0.229  Sum_probs=36.3

Q ss_pred             ceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCcEEEE
Q 018029          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII  240 (362)
Q Consensus       192 ~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~  240 (362)
                      .|++|+|.+.++|...-.. ...+.||+..|.+++.+...+ ..+..|+
T Consensus        35 ~G~l~LTthRli~~~~~~~-~~s~~lpl~~i~~~e~~~~~f-g~s~ki~   81 (129)
T d2hthb1          35 AGTLLLSTHRLIWRDQKNH-ECCMAILLSQIVFIEEQAAGI-GKSAKIV   81 (129)
T ss_dssp             CEEEEEESSEEEEEETTCC-SCCEEEEGGGEEEEEEECCTT-SSCCEEE
T ss_pred             ceEEEEEeceEEEecCCCC-ceEEEEEhHHceeeeEEcccc-cCCceEE
Confidence            3999999999999866544 467899999999999988754 4443333

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.28  E-value=0.37  Score=37.20  Aligned_cols=81  Identities=17%  Similarity=0.258  Sum_probs=50.9

Q ss_pred             ceeEEEecceEEEeecCCCceeEEEeecccceEEEEeccccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeech-
Q 018029          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNR-  270 (362)
Q Consensus       192 ~G~lyis~~~~cF~S~~~g~~~k~~ip~~di~~i~k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~F~sf~~r-  270 (362)
                      .|++|+|.+.+||-..-.-....+.+|+..|..++-.+.. +..+..|+++..      |+.    ....|+=.||-.- 
T Consensus        44 ~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~~~-~~ss~KI~l~l~------~~~----~~~~~vklsFr~gg  112 (130)
T d2caya1          44 RGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGF-LTRSPRLILFFK------DPS----SSTEFVQLSFRKSD  112 (130)
T ss_dssp             SEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSS-SSSSCEEEEEES------SCS----STTCCEEEEESSSC
T ss_pred             CceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEEccc-cCCCCeEEEEeC------CCC----CCCCEEEEEEcCCC
Confidence            4999999999999765432344699999999999977763 444556665432      221    1122333344443 


Q ss_pred             -HHHHHHHHHHHHH
Q 018029          271 -NHALRQLQRTAKN  283 (362)
Q Consensus       271 -d~~~~~l~~~~~~  283 (362)
                       .+-++++++.+++
T Consensus       113 ~~~F~~~~~~~~~~  126 (130)
T d2caya1         113 GVLFSQATERALEN  126 (130)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence             3446777766654